Query 040987
Match_columns 762
No_of_seqs 855 out of 4775
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 02:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 2.4E-56 5.1E-61 440.0 43.1 565 35-683 25-621 (775)
2 KOG0318 WD40 repeat stress pro 100.0 2.5E-51 5.3E-56 388.7 57.7 542 10-681 39-602 (603)
3 KOG0291 WD40-repeat-containing 100.0 1.8E-51 3.9E-56 405.8 57.7 546 18-694 44-625 (893)
4 KOG0319 WD40-repeat-containing 100.0 8E-53 1.7E-57 415.1 43.4 540 79-700 25-596 (775)
5 KOG0306 WD40-repeat-containing 100.0 6E-52 1.3E-56 409.0 48.0 560 43-686 34-669 (888)
6 KOG0318 WD40 repeat stress pro 100.0 1.8E-49 4E-54 376.0 53.9 544 19-686 6-565 (603)
7 KOG0271 Notchless-like WD40 re 100.0 9.9E-51 2.1E-55 369.3 30.5 327 275-679 109-479 (480)
8 KOG0271 Notchless-like WD40 re 100.0 7.9E-51 1.7E-55 369.9 28.0 331 66-474 109-479 (480)
9 KOG0291 WD40-repeat-containing 100.0 1.9E-46 4.1E-51 370.4 51.7 450 79-683 20-510 (893)
10 KOG0306 WD40-repeat-containing 100.0 7.6E-47 1.6E-51 373.0 39.9 474 33-586 67-665 (888)
11 KOG1963 WD40 repeat protein [G 100.0 9.4E-45 2E-49 367.0 50.6 523 69-638 12-539 (792)
12 KOG1408 WD40 repeat protein [F 100.0 1.4E-43 2.9E-48 347.4 38.0 556 19-682 25-714 (1080)
13 KOG0272 U4/U6 small nuclear ri 100.0 4.9E-44 1.1E-48 330.4 22.2 282 69-474 172-458 (459)
14 KOG1539 WD repeat protein [Gen 100.0 8.4E-39 1.8E-43 320.3 52.6 518 53-682 95-649 (910)
15 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-42 3E-47 320.9 22.2 282 350-679 172-458 (459)
16 KOG0286 G-protein beta subunit 100.0 3.8E-40 8.3E-45 290.1 30.4 292 64-474 47-343 (343)
17 KOG0286 G-protein beta subunit 100.0 7.6E-40 1.7E-44 288.2 30.9 287 346-679 48-343 (343)
18 KOG2106 Uncharacterized conser 100.0 1.9E-37 4.2E-42 292.8 47.3 517 53-680 85-625 (626)
19 KOG1063 RNA polymerase II elon 100.0 1.4E-38 3E-43 312.3 40.9 527 74-683 15-650 (764)
20 KOG0315 G-protein beta subunit 100.0 2.4E-39 5.3E-44 278.2 27.8 297 39-402 6-308 (311)
21 KOG0315 G-protein beta subunit 100.0 5.2E-39 1.1E-43 276.2 28.5 286 366-694 11-301 (311)
22 KOG0276 Vesicle coat complex C 100.0 1.8E-37 4E-42 300.4 42.0 469 67-681 8-490 (794)
23 KOG1539 WD repeat protein [Gen 100.0 1.2E-36 2.7E-41 304.8 46.2 534 6-638 82-649 (910)
24 KOG1408 WD40 repeat protein [F 100.0 1E-37 2.3E-42 306.3 37.5 546 42-638 89-714 (1080)
25 KOG0296 Angio-associated migra 100.0 5.6E-38 1.2E-42 285.1 32.1 334 275-681 58-398 (399)
26 KOG0279 G protein beta subunit 100.0 9.5E-38 2.1E-42 273.4 29.9 288 346-681 8-313 (315)
27 KOG0279 G protein beta subunit 100.0 1.5E-37 3.2E-42 272.2 30.0 297 227-585 7-313 (315)
28 KOG0273 Beta-transducin family 100.0 9.2E-37 2E-41 286.2 34.0 336 275-681 173-523 (524)
29 KOG0273 Beta-transducin family 100.0 1.3E-36 2.8E-41 285.3 30.4 315 34-424 182-523 (524)
30 KOG0292 Vesicle coat complex C 100.0 3.4E-35 7.3E-40 295.6 42.2 352 68-517 5-384 (1202)
31 KOG1063 RNA polymerase II elon 100.0 7.2E-35 1.6E-39 286.3 42.9 552 45-681 27-699 (764)
32 KOG0276 Vesicle coat complex C 100.0 4.8E-35 1E-39 283.7 39.4 446 108-694 7-465 (794)
33 KOG2106 Uncharacterized conser 100.0 1.7E-33 3.6E-38 266.3 44.6 477 43-636 116-625 (626)
34 KOG0296 Angio-associated migra 100.0 5.4E-35 1.2E-39 265.8 31.5 337 229-637 58-398 (399)
35 KOG0645 WD40 repeat protein [G 100.0 2.3E-34 5.1E-39 251.1 32.7 300 105-537 5-311 (312)
36 KOG0645 WD40 repeat protein [G 100.0 2.5E-34 5.4E-39 250.9 30.0 297 65-476 7-311 (312)
37 KOG0295 WD40 repeat-containing 100.0 6.8E-35 1.5E-39 264.9 25.6 286 275-636 102-405 (406)
38 KOG2048 WD40 repeat protein [G 100.0 5.5E-32 1.2E-36 265.9 47.2 495 43-684 37-551 (691)
39 KOG0284 Polyadenylation factor 100.0 1.1E-35 2.4E-40 273.8 19.4 283 280-637 95-380 (464)
40 KOG0293 WD40 repeat-containing 100.0 6.7E-35 1.4E-39 268.9 23.6 293 275-682 218-514 (519)
41 KOG0265 U5 snRNP-specific prot 100.0 4E-34 8.7E-39 253.4 27.6 289 344-677 38-334 (338)
42 KOG0263 Transcription initiati 100.0 8.6E-35 1.9E-39 291.5 26.0 281 106-479 370-652 (707)
43 KOG0295 WD40 repeat-containing 100.0 7E-35 1.5E-39 264.8 22.9 288 345-680 100-405 (406)
44 KOG0285 Pleiotropic regulator 100.0 1.1E-34 2.3E-39 262.7 23.5 303 58-539 137-441 (460)
45 KOG0284 Polyadenylation factor 100.0 4.3E-35 9.2E-40 270.0 18.6 281 235-585 96-380 (464)
46 KOG0263 Transcription initiati 100.0 6.7E-35 1.4E-39 292.3 21.6 283 346-686 371-654 (707)
47 KOG0292 Vesicle coat complex C 100.0 1.5E-31 3.3E-36 269.5 40.4 490 108-694 3-530 (1202)
48 KOG0293 WD40 repeat-containing 100.0 2.3E-33 5E-38 258.8 23.2 293 229-586 218-514 (519)
49 KOG0643 Translation initiation 100.0 1.3E-32 2.8E-37 239.5 26.5 293 65-477 3-318 (327)
50 KOG0265 U5 snRNP-specific prot 100.0 1.6E-32 3.4E-37 243.3 27.2 294 229-583 41-336 (338)
51 KOG0266 WD40 repeat-containing 100.0 9.7E-33 2.1E-37 287.5 30.0 287 67-476 153-454 (456)
52 KOG0281 Beta-TrCP (transducin 100.0 1.6E-34 3.5E-39 260.3 13.9 270 73-429 198-482 (499)
53 cd00200 WD40 WD40 domain, foun 100.0 7.3E-32 1.6E-36 270.3 34.8 283 67-474 4-289 (289)
54 KOG0282 mRNA splicing factor [ 100.0 7.2E-34 1.6E-38 268.0 17.7 294 272-635 205-503 (503)
55 cd00200 WD40 WD40 domain, foun 100.0 1.3E-31 2.9E-36 268.4 35.3 285 347-679 3-289 (289)
56 KOG0282 mRNA splicing factor [ 100.0 4.5E-33 9.7E-38 262.7 21.6 289 61-474 203-503 (503)
57 KOG0316 Conserved WD40 repeat- 100.0 5.5E-32 1.2E-36 231.1 24.6 280 106-517 9-289 (307)
58 KOG2048 WD40 repeat protein [G 100.0 1.8E-29 3.9E-34 248.3 44.9 472 72-689 25-513 (691)
59 KOG0285 Pleiotropic regulator 100.0 6.7E-32 1.4E-36 244.6 24.6 290 342-681 140-439 (460)
60 KOG0266 WD40 repeat-containing 100.0 3.2E-31 6.9E-36 276.2 31.4 288 347-681 152-454 (456)
61 KOG0278 Serine/threonine kinas 100.0 1.3E-32 2.8E-37 237.0 16.9 289 275-641 8-301 (334)
62 KOG0275 Conserved WD40 repeat- 100.0 2.1E-32 4.7E-37 244.3 18.3 285 69-535 210-507 (508)
63 KOG0278 Serine/threonine kinas 100.0 3.8E-32 8.3E-37 234.1 16.8 291 65-541 7-301 (334)
64 KOG1407 WD40 repeat protein [F 100.0 2.6E-30 5.6E-35 224.5 27.9 277 347-672 14-295 (313)
65 PLN00181 protein SPA1-RELATED; 100.0 6.4E-30 1.4E-34 288.0 39.6 288 349-680 479-792 (793)
66 KOG0281 Beta-TrCP (transducin 100.0 7.2E-32 1.6E-36 243.3 15.9 276 352-686 196-482 (499)
67 KOG0316 Conserved WD40 repeat- 100.0 6.7E-30 1.4E-34 218.4 26.9 285 345-680 9-298 (307)
68 KOG1407 WD40 repeat protein [F 100.0 2E-30 4.3E-35 225.3 22.9 282 60-415 8-293 (313)
69 PLN00181 protein SPA1-RELATED; 100.0 1.9E-29 4.1E-34 284.2 37.9 311 213-584 457-792 (793)
70 KOG0643 Translation initiation 100.0 6.1E-30 1.3E-34 222.9 25.6 286 348-682 5-318 (327)
71 KOG0275 Conserved WD40 repeat- 100.0 8.7E-31 1.9E-35 234.1 19.7 294 229-583 207-507 (508)
72 KOG0313 Microtubule binding pr 100.0 4.8E-29 1E-33 228.3 27.4 316 62-537 95-418 (423)
73 KOG0640 mRNA cleavage stimulat 100.0 1.7E-29 3.8E-34 224.6 23.6 315 275-636 106-425 (430)
74 KOG0288 WD40 repeat protein Ti 100.0 1.3E-30 2.8E-35 241.0 16.5 288 344-679 166-459 (459)
75 KOG1446 Histone H3 (Lys4) meth 100.0 4.7E-28 1E-32 217.5 31.8 292 346-682 7-304 (311)
76 KOG2096 WD40 repeat protein [G 100.0 1.2E-28 2.7E-33 220.1 26.0 309 346-679 79-400 (420)
77 KOG0973 Histone transcription 100.0 1.4E-28 3E-33 256.0 27.8 309 278-639 10-357 (942)
78 KOG0772 Uncharacterized conser 100.0 2.5E-28 5.5E-33 232.0 27.0 309 345-679 159-485 (641)
79 KOG0305 Anaphase promoting com 100.0 4.4E-28 9.6E-33 239.8 27.5 278 238-587 180-463 (484)
80 KOG0640 mRNA cleavage stimulat 100.0 7.7E-29 1.7E-33 220.5 19.6 298 346-679 105-424 (430)
81 KOG0283 WD40 repeat-containing 100.0 4.6E-28 1E-32 245.7 26.8 283 279-588 265-579 (712)
82 KOG0313 Microtubule binding pr 100.0 5.4E-28 1.2E-32 221.4 24.1 290 352-681 104-418 (423)
83 KOG0305 Anaphase promoting com 100.0 6.6E-28 1.4E-32 238.6 26.6 274 358-683 182-463 (484)
84 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-26 2.5E-31 208.7 31.5 292 105-539 5-305 (311)
85 KOG0274 Cdc4 and related F-box 100.0 1.7E-27 3.6E-32 246.1 29.2 283 66-432 201-490 (537)
86 KOG0268 Sof1-like rRNA process 100.0 5.5E-29 1.2E-33 226.3 15.5 294 272-645 57-353 (433)
87 KOG0288 WD40 repeat protein Ti 100.0 1.2E-28 2.6E-33 228.1 17.6 288 230-582 170-458 (459)
88 KOG0283 WD40 repeat-containing 100.0 6.1E-28 1.3E-32 244.8 24.3 215 275-540 363-579 (712)
89 KOG0299 U3 snoRNP-associated p 100.0 3.3E-27 7.2E-32 221.9 26.4 307 107-517 135-444 (479)
90 KOG1445 Tumor-specific antigen 100.0 2.9E-26 6.2E-31 223.2 32.3 193 465-684 600-801 (1012)
91 KOG0772 Uncharacterized conser 100.0 2E-27 4.2E-32 226.0 22.5 311 230-583 162-485 (641)
92 KOG1445 Tumor-specific antigen 100.0 1.3E-26 2.7E-31 225.7 28.6 573 42-685 91-848 (1012)
93 KOG0973 Histone transcription 100.0 3.4E-27 7.4E-32 245.7 26.1 291 352-685 12-359 (942)
94 KOG0647 mRNA export protein (c 100.0 3.2E-26 6.9E-31 203.6 28.2 282 276-626 22-311 (347)
95 KOG0641 WD40 repeat protein [G 100.0 2.2E-25 4.7E-30 189.5 31.5 308 279-637 30-349 (350)
96 KOG0277 Peroxisomal targeting 100.0 4.9E-27 1.1E-31 203.4 20.2 277 357-680 12-308 (311)
97 KOG0310 Conserved WD40 repeat- 100.0 2.5E-26 5.5E-31 217.8 26.3 282 279-639 24-311 (487)
98 KOG2096 WD40 repeat protein [G 100.0 4.7E-26 1E-30 203.7 25.7 306 229-583 80-400 (420)
99 KOG0308 Conserved WD40 repeat- 100.0 2.1E-27 4.6E-32 232.3 18.6 276 43-424 37-327 (735)
100 KOG0310 Conserved WD40 repeat- 100.0 3.4E-26 7.3E-31 217.0 25.5 278 352-680 25-308 (487)
101 PTZ00421 coronin; Provisional 100.0 5.3E-25 1.1E-29 227.8 36.9 284 281-619 20-314 (493)
102 KOG0647 mRNA export protein (c 100.0 9.7E-26 2.1E-30 200.5 26.1 279 350-668 24-312 (347)
103 KOG0641 WD40 repeat protein [G 100.0 1.3E-24 2.8E-29 184.8 31.6 305 231-585 28-349 (350)
104 KOG0289 mRNA splicing factor [ 100.0 1.2E-25 2.5E-30 209.7 27.1 282 354-680 220-505 (506)
105 KOG0300 WD40 repeat-containing 100.0 9.7E-27 2.1E-31 207.8 19.1 324 67-478 143-478 (481)
106 PTZ00421 coronin; Provisional 99.9 4.5E-25 9.7E-30 228.3 34.0 238 276-566 70-314 (493)
107 KOG0277 Peroxisomal targeting 99.9 8.5E-26 1.8E-30 195.8 23.6 280 285-636 12-308 (311)
108 KOG0289 mRNA splicing factor [ 99.9 1.7E-25 3.7E-30 208.5 27.1 281 235-584 219-505 (506)
109 KOG2055 WD40 repeat protein [G 99.9 1.2E-25 2.6E-30 211.3 26.3 289 352-681 212-512 (514)
110 KOG2055 WD40 repeat protein [G 99.9 9.3E-26 2E-30 212.1 25.1 287 280-637 212-512 (514)
111 KOG0274 Cdc4 and related F-box 99.9 2.8E-25 6E-30 229.7 29.9 280 352-690 207-491 (537)
112 PTZ00420 coronin; Provisional 99.9 3.5E-25 7.7E-30 229.6 30.6 244 49-406 50-318 (568)
113 KOG0268 Sof1-like rRNA process 99.9 9.2E-27 2E-31 212.0 16.4 286 346-685 59-349 (433)
114 KOG0300 WD40 repeat-containing 99.9 1.6E-25 3.4E-30 200.1 23.7 321 229-587 142-478 (481)
115 KOG0299 U3 snoRNP-associated p 99.9 1.9E-25 4.1E-30 210.1 25.0 281 346-668 135-444 (479)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.4E-24 9.6E-29 215.2 35.6 292 294-659 2-300 (300)
117 KOG0294 WD40 repeat-containing 99.9 1.8E-24 3.8E-29 193.7 28.4 243 345-639 35-283 (362)
118 KOG4283 Transcription-coupled 99.9 6.8E-25 1.5E-29 194.2 25.1 321 275-680 37-364 (397)
119 KOG1538 Uncharacterized conser 99.9 6.2E-24 1.3E-28 208.3 34.1 276 74-477 14-294 (1081)
120 PTZ00420 coronin; Provisional 99.9 3E-24 6.6E-29 222.6 34.0 261 254-568 52-319 (568)
121 KOG0308 Conserved WD40 repeat- 99.9 1.1E-25 2.4E-30 220.4 20.9 352 245-689 35-401 (735)
122 KOG0639 Transducin-like enhanc 99.9 9.5E-26 2.1E-30 213.7 19.8 286 112-536 417-703 (705)
123 KOG1332 Vesicle coat complex C 99.9 9.3E-26 2E-30 194.4 17.5 251 67-425 6-287 (299)
124 KOG0646 WD40 repeat protein [G 99.9 4.4E-25 9.5E-30 208.2 23.4 300 135-509 9-330 (476)
125 KOG0639 Transducin-like enhanc 99.9 2E-25 4.3E-30 211.6 20.7 283 277-636 415-703 (705)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-23 2.3E-28 212.4 35.0 283 366-692 2-290 (300)
127 KOG1036 Mitotic spindle checkp 99.9 4.2E-24 9.1E-29 191.1 27.1 279 352-669 12-294 (323)
128 KOG1036 Mitotic spindle checkp 99.9 5.1E-24 1.1E-28 190.6 27.4 277 278-627 10-293 (323)
129 KOG0301 Phospholipase A2-activ 99.9 2.2E-24 4.8E-29 213.1 26.0 284 105-478 5-290 (745)
130 KOG0294 WD40 repeat-containing 99.9 8E-24 1.7E-28 189.6 27.1 262 368-683 4-283 (362)
131 KOG0301 Phospholipase A2-activ 99.9 1.5E-24 3.3E-29 214.2 23.6 261 43-386 25-291 (745)
132 KOG1274 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 215.1 28.9 278 277-625 9-287 (933)
133 KOG1963 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 199.2 42.7 475 110-682 12-539 (792)
134 KOG0650 WD40 repeat nucleolar 99.9 1.9E-23 4.1E-28 202.8 24.7 327 59-473 387-732 (733)
135 KOG4283 Transcription-coupled 99.9 5.5E-23 1.2E-27 182.1 24.8 298 66-475 37-364 (397)
136 KOG0646 WD40 repeat protein [G 99.9 1.5E-23 3.4E-28 197.8 21.5 268 366-660 51-330 (476)
137 KOG1273 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 184.1 23.5 286 284-638 26-323 (405)
138 KOG1274 WD40 repeat protein [G 99.9 1.4E-22 3E-27 207.0 28.3 278 350-671 10-292 (933)
139 KOG1273 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 182.0 23.9 292 356-685 26-326 (405)
140 KOG1332 Vesicle coat complex C 99.9 1.4E-23 2.9E-28 181.1 17.4 256 274-586 4-287 (299)
141 KOG0650 WD40 repeat nucleolar 99.9 9.7E-23 2.1E-27 197.9 24.1 320 107-582 393-732 (733)
142 KOG4497 Uncharacterized conser 99.9 1.3E-22 2.8E-27 182.7 20.8 404 79-671 14-424 (447)
143 KOG0264 Nucleosome remodeling 99.9 1.5E-22 3.4E-27 190.9 20.5 252 69-424 121-404 (422)
144 KOG0269 WD40 repeat-containing 99.9 3.2E-22 7E-27 200.4 20.7 296 235-588 39-343 (839)
145 KOG0264 Nucleosome remodeling 99.9 8.8E-22 1.9E-26 185.9 20.9 252 390-682 120-405 (422)
146 KOG1009 Chromatin assembly com 99.9 6.7E-21 1.5E-25 176.9 26.2 335 279-686 11-377 (434)
147 KOG0269 WD40 repeat-containing 99.9 2.5E-22 5.5E-27 201.1 18.0 283 355-684 41-343 (839)
148 KOG1538 Uncharacterized conser 99.9 2.1E-20 4.5E-25 183.8 29.5 276 237-586 14-294 (1081)
149 KOG4328 WD40 protein [Function 99.9 4.6E-21 9.9E-26 180.6 23.8 301 275-637 180-495 (498)
150 KOG2919 Guanine nucleotide-bin 99.9 6E-21 1.3E-25 171.7 22.2 282 356-671 52-362 (406)
151 KOG0267 Microtubule severing p 99.9 3.8E-23 8.2E-28 205.2 9.0 248 208-517 8-257 (825)
152 KOG2445 Nuclear pore complex c 99.9 2.2E-20 4.7E-25 167.1 24.8 260 350-683 10-320 (361)
153 KOG0321 WD40 repeat-containing 99.9 2.5E-21 5.5E-26 189.7 20.2 310 42-478 63-393 (720)
154 KOG1034 Transcriptional repres 99.9 1E-20 2.2E-25 170.8 21.7 313 229-585 32-383 (385)
155 KOG4378 Nuclear protein COP1 [ 99.9 6.3E-21 1.4E-25 181.1 21.4 266 355-666 36-309 (673)
156 KOG4328 WD40 protein [Function 99.9 1.5E-20 3.3E-25 177.1 23.3 301 345-682 178-496 (498)
157 COG2319 FOG: WD40 repeat [Gene 99.9 6.2E-18 1.3E-22 181.0 45.7 369 66-586 59-443 (466)
158 KOG2445 Nuclear pore complex c 99.9 9.2E-20 2E-24 163.2 25.7 266 275-586 7-319 (361)
159 KOG0321 WD40 repeat-containing 99.9 2.1E-20 4.5E-25 183.4 23.4 297 359-684 55-394 (720)
160 KOG4378 Nuclear protein COP1 [ 99.9 1.5E-20 3.3E-25 178.5 21.5 291 87-458 5-305 (673)
161 KOG0267 Microtubule severing p 99.9 3.7E-22 7.9E-27 198.3 11.1 235 347-627 22-257 (825)
162 KOG2919 Guanine nucleotide-bin 99.9 6E-20 1.3E-24 165.3 23.3 276 78-467 54-361 (406)
163 COG2319 FOG: WD40 repeat [Gene 99.9 1.2E-17 2.6E-22 178.7 46.0 369 230-682 60-443 (466)
164 KOG1034 Transcriptional repres 99.9 4E-20 8.6E-25 166.9 19.2 286 43-424 55-383 (385)
165 KOG1188 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 165.1 21.6 277 86-476 41-346 (376)
166 KOG4497 Uncharacterized conser 99.8 9.6E-20 2.1E-24 164.3 19.5 353 240-682 13-392 (447)
167 KOG1009 Chromatin assembly com 99.8 6.5E-19 1.4E-23 163.9 25.2 319 233-590 11-377 (434)
168 PRK11028 6-phosphogluconolacto 99.8 4.6E-18 9.9E-23 172.3 32.6 285 370-685 7-310 (330)
169 PF02239 Cytochrom_D1: Cytochr 99.8 1.3E-16 2.7E-21 160.2 38.9 329 297-690 10-356 (369)
170 KOG0302 Ribosome Assembly prot 99.8 5.7E-19 1.2E-23 162.4 19.7 211 68-384 147-379 (440)
171 KOG0302 Ribosome Assembly prot 99.8 9.6E-19 2.1E-23 161.0 20.1 250 390-680 147-437 (440)
172 KOG0322 G-protein beta subunit 99.8 3.2E-19 7E-24 156.1 16.1 298 344-680 5-322 (323)
173 KOG0270 WD40 repeat-containing 99.8 7.6E-19 1.7E-23 165.3 18.7 233 41-315 190-453 (463)
174 PRK11028 6-phosphogluconolacto 99.8 7.3E-17 1.6E-21 163.5 34.9 289 250-585 6-304 (330)
175 KOG1007 WD repeat protein TSSC 99.8 7.9E-18 1.7E-22 149.4 22.9 274 42-424 25-361 (370)
176 KOG0307 Vesicle coat complex C 99.8 1.4E-19 3E-24 190.4 13.9 284 358-684 11-330 (1049)
177 KOG0270 WD40 repeat-containing 99.8 1.1E-17 2.4E-22 157.6 24.4 302 239-591 129-455 (463)
178 KOG0322 G-protein beta subunit 99.8 2.8E-18 6E-23 150.4 18.7 300 275-636 8-322 (323)
179 KOG4227 WD40 repeat protein [G 99.8 2E-18 4.2E-23 159.4 18.0 338 274-694 49-398 (609)
180 KOG0644 Uncharacterized conser 99.8 1.4E-19 3.1E-24 182.7 11.4 284 66-479 184-471 (1113)
181 KOG1007 WD repeat protein TSSC 99.8 1.7E-17 3.8E-22 147.2 22.9 276 373-681 38-361 (370)
182 KOG0303 Actin-binding protein 99.8 9.9E-18 2.1E-22 155.3 21.9 246 246-541 43-298 (472)
183 KOG1912 WD40 repeat protein [G 99.8 1.9E-16 4.1E-21 159.2 32.3 536 78-690 20-708 (1062)
184 COG4946 Uncharacterized protei 99.8 1.2E-14 2.6E-19 138.3 41.6 506 53-638 59-655 (668)
185 KOG0307 Vesicle coat complex C 99.8 7.5E-19 1.6E-23 184.9 14.5 249 354-640 65-330 (1049)
186 PF02239 Cytochrom_D1: Cytochr 99.8 5.5E-16 1.2E-20 155.6 33.6 321 86-546 6-356 (369)
187 KOG1524 WD40 repeat-containing 99.8 1.8E-16 3.9E-21 152.7 28.2 263 233-581 12-282 (737)
188 KOG2110 Uncharacterized conser 99.8 8.1E-16 1.8E-20 141.9 30.8 331 282-694 6-345 (391)
189 KOG0649 WD40 repeat protein [G 99.8 4.6E-16 1E-20 134.8 27.4 250 283-586 12-275 (325)
190 KOG0642 Cell-cycle nuclear pro 99.8 5.5E-18 1.2E-22 164.5 15.0 269 275-591 288-567 (577)
191 KOG2315 Predicted translation 99.8 3.3E-15 7.1E-20 145.6 32.5 361 46-540 5-393 (566)
192 KOG1524 WD40 repeat-containing 99.8 5.6E-17 1.2E-21 156.1 19.9 259 351-672 12-279 (737)
193 KOG4227 WD40 repeat protein [G 99.8 1.3E-16 2.9E-21 147.4 21.4 309 229-584 50-386 (609)
194 KOG0771 Prolactin regulatory e 99.8 1.7E-16 3.8E-21 149.2 22.1 200 450-681 148-354 (398)
195 KOG1517 Guanine nucleotide bin 99.8 2.2E-16 4.8E-21 164.1 24.1 304 234-587 1063-1383(1387)
196 PRK01742 tolB translocation pr 99.7 8.1E-17 1.8E-21 168.0 21.0 235 374-660 183-426 (429)
197 KOG2110 Uncharacterized conser 99.7 1.3E-15 2.9E-20 140.5 25.4 237 74-386 7-251 (391)
198 KOG0290 Conserved WD40 repeat- 99.7 1.8E-15 3.9E-20 134.8 25.1 264 212-517 71-355 (364)
199 KOG0642 Cell-cycle nuclear pro 99.7 3.5E-17 7.6E-22 159.0 15.4 273 230-544 289-568 (577)
200 PRK01742 tolB translocation pr 99.7 2.4E-16 5.2E-21 164.5 22.7 234 211-509 181-426 (429)
201 KOG0303 Actin-binding protein 99.7 4.9E-16 1.1E-20 144.2 21.1 212 347-588 75-297 (472)
202 KOG1523 Actin-related protein 99.7 4.8E-16 1E-20 140.5 20.5 212 235-479 10-239 (361)
203 KOG1517 Guanine nucleotide bin 99.7 5.5E-16 1.2E-20 161.2 23.8 300 353-685 1064-1385(1387)
204 KOG0649 WD40 repeat protein [G 99.7 9.2E-16 2E-20 133.0 21.3 256 396-681 12-274 (325)
205 KOG1188 WD40 repeat protein [G 99.7 2.3E-16 5E-21 143.8 18.3 283 208-537 44-346 (376)
206 KOG0290 Conserved WD40 repeat- 99.7 1.4E-15 3.1E-20 135.4 21.7 270 42-420 58-361 (364)
207 COG5354 Uncharacterized protei 99.7 1.3E-14 2.9E-19 139.6 29.6 380 56-577 15-421 (561)
208 PRK03629 tolB translocation pr 99.7 4.2E-15 9.1E-20 154.6 27.9 232 54-404 180-427 (429)
209 KOG0771 Prolactin regulatory e 99.7 9.8E-17 2.1E-21 150.8 13.9 199 78-384 149-355 (398)
210 PRK05137 tolB translocation pr 99.7 3.6E-15 7.8E-20 156.4 27.5 232 53-404 182-432 (435)
211 KOG2315 Predicted translation 99.7 5E-14 1.1E-18 137.5 32.1 353 250-687 5-395 (566)
212 KOG1912 WD40 repeat protein [G 99.7 5.3E-14 1.1E-18 141.9 33.1 561 43-684 26-744 (1062)
213 PRK03629 tolB translocation pr 99.7 4E-15 8.6E-20 154.8 26.0 236 375-659 179-427 (429)
214 KOG2139 WD40 repeat protein [G 99.7 2.5E-14 5.5E-19 131.5 27.2 317 235-637 98-431 (445)
215 PRK04922 tolB translocation pr 99.7 4.9E-15 1.1E-19 155.1 25.8 233 53-404 184-432 (433)
216 KOG1310 WD40 repeat protein [G 99.7 2.4E-15 5.1E-20 145.5 20.7 231 229-483 44-310 (758)
217 KOG0644 Uncharacterized conser 99.7 7.2E-17 1.6E-21 163.4 10.7 288 344-685 181-472 (1113)
218 PF10282 Lactonase: Lactonase, 99.7 7.9E-13 1.7E-17 133.7 39.8 299 368-689 2-332 (345)
219 KOG1334 WD40 repeat protein [G 99.7 5E-16 1.1E-20 148.2 15.3 315 274-642 135-471 (559)
220 KOG1272 WD40-repeat-containing 99.7 1.2E-16 2.6E-21 151.4 9.8 267 354-671 130-401 (545)
221 KOG2394 WD40 protein DMR-N9 [G 99.7 2.7E-15 5.9E-20 144.9 19.2 205 455-687 182-458 (636)
222 PRK05137 tolB translocation pr 99.7 1.6E-14 3.5E-19 151.5 26.5 216 213-479 181-415 (435)
223 KOG1523 Actin-related protein 99.7 2.2E-14 4.8E-19 129.9 23.3 257 393-679 9-278 (361)
224 PRK04922 tolB translocation pr 99.7 1.1E-14 2.5E-19 152.3 25.1 214 213-477 183-412 (433)
225 KOG2314 Translation initiation 99.7 1.5E-14 3.2E-19 140.4 23.4 345 55-539 192-575 (698)
226 PRK02889 tolB translocation pr 99.7 2.2E-14 4.7E-19 149.6 26.4 212 213-475 175-402 (427)
227 KOG1587 Cytoplasmic dynein int 99.7 2.1E-14 4.5E-19 147.9 25.5 276 256-587 222-518 (555)
228 COG5354 Uncharacterized protei 99.7 1.4E-13 2.9E-18 132.8 28.7 346 229-671 26-421 (561)
229 KOG1240 Protein kinase contain 99.7 1.8E-14 3.8E-19 152.8 24.0 305 342-679 1037-1431(1431)
230 KOG1334 WD40 repeat protein [G 99.7 2.1E-15 4.5E-20 144.0 15.2 312 346-683 135-468 (559)
231 PRK02889 tolB translocation pr 99.7 5.2E-14 1.1E-18 146.7 26.9 234 53-405 176-425 (427)
232 KOG2139 WD40 repeat protein [G 99.6 2E-13 4.3E-18 125.7 26.3 302 208-585 114-431 (445)
233 KOG2111 Uncharacterized conser 99.6 1E-12 2.2E-17 119.3 30.2 244 283-588 7-259 (346)
234 COG4946 Uncharacterized protei 99.6 6E-12 1.3E-16 120.2 36.6 227 402-670 274-509 (668)
235 KOG2314 Translation initiation 99.6 1.9E-12 4.2E-17 126.0 33.8 332 284-692 213-575 (698)
236 KOG1587 Cytoplasmic dynein int 99.6 4E-14 8.6E-19 145.8 23.7 282 212-539 220-518 (555)
237 KOG2394 WD40 protein DMR-N9 [G 99.6 4.5E-14 9.8E-19 136.6 22.0 254 237-565 125-384 (636)
238 KOG2111 Uncharacterized conser 99.6 2.2E-13 4.7E-18 123.6 24.1 240 396-684 7-259 (346)
239 TIGR02658 TTQ_MADH_Hv methylam 99.6 4.6E-12 9.9E-17 123.8 35.4 281 375-689 27-338 (352)
240 KOG1240 Protein kinase contain 99.6 7.8E-14 1.7E-18 148.0 24.5 364 58-474 1034-1431(1431)
241 KOG2041 WD40 repeat protein [G 99.6 1E-12 2.2E-17 131.5 30.8 459 74-694 16-545 (1189)
242 KOG2321 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 134.7 23.3 286 352-682 50-344 (703)
243 KOG2321 WD40 repeat protein [G 99.6 1.9E-13 4.2E-18 133.4 23.9 308 213-586 6-344 (703)
244 PF08662 eIF2A: Eukaryotic tra 99.6 1.5E-13 3.3E-18 125.1 21.6 166 501-689 8-186 (194)
245 KOG0974 WD-repeat protein WDR6 99.6 8.8E-12 1.9E-16 131.0 36.4 187 42-313 98-290 (967)
246 KOG2041 WD40 repeat protein [G 99.6 5.4E-12 1.2E-16 126.5 32.7 513 33-685 16-623 (1189)
247 PF10282 Lactonase: Lactonase, 99.6 5.2E-11 1.1E-15 120.5 40.8 289 212-538 11-323 (345)
248 COG2706 3-carboxymuconate cycl 99.6 5.6E-11 1.2E-15 110.9 36.5 285 211-541 13-325 (346)
249 KOG1354 Serine/threonine prote 99.6 3.6E-13 7.9E-18 123.2 21.3 292 73-427 25-362 (433)
250 COG2706 3-carboxymuconate cycl 99.6 1.8E-11 4E-16 114.1 32.3 287 374-682 15-322 (346)
251 KOG1272 WD40-repeat-containing 99.6 3.4E-15 7.4E-20 141.7 7.9 204 448-693 131-335 (545)
252 PRK04792 tolB translocation pr 99.6 2.5E-12 5.5E-17 134.4 28.2 232 54-404 199-446 (448)
253 PF04762 IKI3: IKI3 family; I 99.6 2.8E-09 6E-14 119.5 52.9 441 38-587 30-521 (928)
254 TIGR02800 propeller_TolB tol-p 99.5 1.6E-12 3.5E-17 137.0 26.1 217 52-387 169-401 (417)
255 PRK04792 tolB translocation pr 99.5 1.3E-12 2.7E-17 136.6 24.8 235 376-659 199-446 (448)
256 PRK00178 tolB translocation pr 99.5 2.1E-12 4.5E-17 136.1 26.5 232 54-404 180-427 (430)
257 PF04762 IKI3: IKI3 family; I 99.5 2.4E-09 5.2E-14 120.0 50.9 326 280-681 208-564 (928)
258 PF08662 eIF2A: Eukaryotic tra 99.5 8.4E-13 1.8E-17 120.2 19.4 157 450-645 9-186 (194)
259 KOG0974 WD-repeat protein WDR6 99.5 8.8E-12 1.9E-16 131.1 28.6 182 208-425 103-289 (967)
260 PRK01029 tolB translocation pr 99.5 7.1E-12 1.5E-16 129.8 28.0 240 375-661 165-426 (428)
261 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.5E-10 3.2E-15 113.3 34.9 269 53-433 27-339 (352)
262 PRK00178 tolB translocation pr 99.5 5E-12 1.1E-16 133.2 26.1 235 376-659 180-427 (430)
263 KOG1310 WD40 repeat protein [G 99.5 2.1E-13 4.6E-18 132.3 14.1 250 346-644 43-310 (758)
264 PRK01029 tolB translocation pr 99.5 7.8E-12 1.7E-16 129.5 26.3 242 53-406 165-426 (428)
265 TIGR02800 propeller_TolB tol-p 99.5 5.1E-12 1.1E-16 133.2 25.3 234 375-657 170-416 (417)
266 KOG3881 Uncharacterized conser 99.5 2.6E-12 5.5E-17 120.0 19.8 253 212-509 77-342 (412)
267 KOG3881 Uncharacterized conser 99.5 4.8E-12 1E-16 118.3 21.1 270 352-660 54-342 (412)
268 KOG1409 Uncharacterized conser 99.5 3.7E-12 8.1E-17 116.8 19.9 251 342-638 13-271 (404)
269 KOG1354 Serine/threonine prote 99.5 6.1E-12 1.3E-16 115.3 20.9 279 394-686 25-364 (433)
270 TIGR03300 assembly_YfgL outer 99.4 8.8E-10 1.9E-14 114.1 29.5 309 293-678 65-376 (377)
271 KOG1409 Uncharacterized conser 99.3 1.2E-10 2.7E-15 107.0 19.0 252 105-478 15-272 (404)
272 KOG4547 WD40 repeat-containing 99.3 2E-10 4.2E-15 113.8 19.3 193 456-682 3-221 (541)
273 PRK04043 tolB translocation pr 99.3 1.4E-09 3.1E-14 111.8 26.5 215 375-640 169-403 (419)
274 PRK04043 tolB translocation pr 99.3 1.6E-09 3.5E-14 111.4 27.0 224 52-397 168-414 (419)
275 TIGR03300 assembly_YfgL outer 99.3 5.8E-09 1.3E-13 108.0 28.6 279 365-693 65-350 (377)
276 PF15492 Nbas_N: Neuroblastoma 99.2 3.9E-08 8.5E-13 89.4 29.1 250 400-693 3-271 (282)
277 KOG4547 WD40 repeat-containing 99.2 4.8E-09 1E-13 104.2 22.7 189 363-586 3-221 (541)
278 KOG0280 Uncharacterized conser 99.1 9.2E-09 2E-13 92.9 19.6 273 212-539 44-335 (339)
279 KOG4532 WD40-like repeat conta 99.1 3E-08 6.5E-13 88.4 21.7 240 405-684 83-334 (344)
280 PF15492 Nbas_N: Neuroblastoma 99.1 4.3E-08 9.4E-13 89.1 23.2 236 79-388 3-264 (282)
281 PLN02919 haloacid dehalogenase 99.1 9E-08 2E-12 109.8 31.8 274 357-641 571-892 (1057)
282 COG5170 CDC55 Serine/threonine 99.1 5.2E-09 1.1E-13 95.0 16.6 276 393-682 25-368 (460)
283 PLN02919 haloacid dehalogenase 99.1 9.4E-08 2E-12 109.7 30.8 281 398-692 571-899 (1057)
284 KOG0280 Uncharacterized conser 99.1 5E-08 1.1E-12 88.3 20.8 272 255-587 45-335 (339)
285 COG5170 CDC55 Serine/threonine 99.0 1.9E-08 4.2E-13 91.4 17.9 302 72-424 26-367 (460)
286 PF07433 DUF1513: Protein of u 99.0 2.5E-07 5.3E-12 87.3 26.0 247 356-635 7-283 (305)
287 KOG4190 Uncharacterized conser 99.0 9.9E-10 2.1E-14 107.3 10.2 294 275-633 729-1032(1034)
288 PF08450 SGL: SMP-30/Gluconola 99.0 1.2E-06 2.5E-11 84.7 31.1 228 358-626 4-243 (246)
289 PF08450 SGL: SMP-30/Gluconola 99.0 1.5E-06 3.2E-11 83.9 31.8 236 398-668 3-244 (246)
290 PF07433 DUF1513: Protein of u 99.0 3E-07 6.4E-12 86.8 25.7 247 394-669 4-276 (305)
291 KOG0309 Conserved WD40 repeat- 99.0 4.7E-09 1E-13 106.4 13.5 298 233-587 22-341 (1081)
292 PRK11138 outer membrane biogen 99.0 6.6E-07 1.4E-11 93.0 29.7 269 365-680 120-393 (394)
293 KOG1064 RAVE (regulator of V-A 99.0 7.3E-09 1.6E-13 115.2 14.8 243 374-671 2189-2438(2439)
294 PRK11138 outer membrane biogen 99.0 3.4E-07 7.5E-12 95.1 25.9 303 85-475 69-393 (394)
295 PF06433 Me-amine-dh_H: Methyl 99.0 3.1E-06 6.8E-11 80.9 29.6 285 375-692 17-331 (342)
296 PRK02888 nitrous-oxide reducta 99.0 2.5E-07 5.3E-12 95.6 23.9 245 245-586 139-405 (635)
297 KOG4190 Uncharacterized conser 99.0 4.1E-09 8.9E-14 103.0 10.5 288 64-472 727-1032(1034)
298 PF00930 DPPIV_N: Dipeptidyl p 98.9 4.4E-06 9.5E-11 85.1 32.9 283 362-669 1-347 (353)
299 KOG3914 WD repeat protein WDR4 98.9 1.1E-08 2.4E-13 96.8 12.7 165 500-692 64-234 (390)
300 KOG4532 WD40-like repeat conta 98.9 1.9E-07 4.1E-12 83.4 19.3 246 365-640 84-334 (344)
301 KOG3914 WD repeat protein WDR4 98.9 3.8E-08 8.2E-13 93.3 13.7 167 448-645 64-231 (390)
302 KOG1064 RAVE (regulator of V-A 98.9 1.6E-08 3.5E-13 112.6 12.8 198 350-594 2205-2407(2439)
303 PF13360 PQQ_2: PQQ-like domai 98.9 2.2E-06 4.7E-11 82.6 25.9 230 415-689 2-238 (238)
304 PF06433 Me-amine-dh_H: Methyl 98.8 4.3E-06 9.3E-11 80.0 26.1 285 53-436 17-332 (342)
305 PF00930 DPPIV_N: Dipeptidyl p 98.8 1.8E-06 3.9E-11 87.9 25.8 281 52-414 22-347 (353)
306 KOG1832 HIV-1 Vpr-binding prot 98.8 6.2E-09 1.4E-13 107.6 6.9 266 344-669 1092-1379(1516)
307 KOG4714 Nucleoporin [Nuclear s 98.8 3.6E-07 7.8E-12 81.4 16.3 143 208-384 105-255 (319)
308 PRK02888 nitrous-oxide reducta 98.8 6.2E-06 1.3E-10 85.5 26.9 264 363-669 139-451 (635)
309 KOG0882 Cyclophilin-related pe 98.8 1.9E-07 4.1E-12 89.6 14.8 293 279-645 7-313 (558)
310 KOG3617 WD40 and TPR repeat-co 98.8 8.2E-07 1.8E-11 92.0 20.3 102 42-152 26-132 (1416)
311 KOG0309 Conserved WD40 repeat- 98.8 9.2E-08 2E-12 97.3 13.0 284 353-683 24-341 (1081)
312 KOG4649 PQQ (pyrrolo-quinoline 98.8 3.5E-05 7.5E-10 69.1 27.4 141 294-476 24-165 (354)
313 PF00400 WD40: WD domain, G-be 98.7 3E-08 6.6E-13 63.6 6.1 39 104-149 1-39 (39)
314 PF14583 Pectate_lyase22: Olig 98.7 2.7E-05 5.8E-10 76.2 28.8 274 357-672 39-374 (386)
315 PF13360 PQQ_2: PQQ-like domai 98.7 2.2E-06 4.9E-11 82.5 21.9 225 374-643 2-236 (238)
316 KOG0882 Cyclophilin-related pe 98.7 3.3E-07 7.3E-12 88.0 14.6 261 393-690 8-314 (558)
317 KOG4649 PQQ (pyrrolo-quinoline 98.7 0.00019 4.1E-09 64.6 29.3 161 218-425 2-166 (354)
318 KOG1920 IkappaB kinase complex 98.6 4.8E-05 1E-09 83.1 29.8 242 282-584 69-364 (1265)
319 cd00216 PQQ_DH Dehydrogenases 98.6 2.5E-05 5.3E-10 83.2 27.7 300 365-693 61-436 (488)
320 KOG1920 IkappaB kinase complex 98.6 1.3E-05 2.9E-10 87.2 25.2 281 353-672 68-358 (1265)
321 KOG3617 WD40 and TPR repeat-co 98.6 3.6E-06 7.7E-11 87.4 19.9 70 237-311 61-131 (1416)
322 KOG1832 HIV-1 Vpr-binding prot 98.6 3.6E-08 7.9E-13 102.1 4.6 220 275-572 1095-1318(1516)
323 PF14583 Pectate_lyase22: Olig 98.6 0.00049 1.1E-08 67.6 31.6 322 59-473 16-378 (386)
324 KOG2695 WD40 repeat protein [G 98.5 3.3E-07 7.2E-12 85.0 9.0 150 527-693 232-388 (425)
325 PF00400 WD40: WD domain, G-be 98.5 2.8E-07 6E-12 59.1 6.2 39 639-679 1-39 (39)
326 COG0823 TolB Periplasmic compo 98.5 1.1E-05 2.3E-10 82.7 19.4 188 447-671 193-391 (425)
327 KOG2695 WD40 repeat protein [G 98.5 4.2E-07 9.2E-12 84.3 8.0 151 297-487 228-387 (425)
328 KOG4714 Nucleoporin [Nuclear s 98.5 3.2E-06 7E-11 75.5 13.1 197 356-586 39-255 (319)
329 KOG3621 WD40 repeat-containing 98.5 1.8E-05 3.9E-10 81.2 20.1 119 25-152 29-155 (726)
330 cd00216 PQQ_DH Dehydrogenases 98.5 0.00023 5.1E-09 75.8 29.4 274 366-671 111-458 (488)
331 KOG2066 Vacuolar assembly/sort 98.4 5.8E-06 1.3E-10 85.9 15.3 189 282-537 40-233 (846)
332 PF11768 DUF3312: Protein of u 98.4 0.00032 6.9E-09 71.4 26.8 118 236-387 206-333 (545)
333 PF04053 Coatomer_WDAD: Coatom 98.4 0.00019 4E-09 74.0 25.4 227 74-424 34-262 (443)
334 COG0823 TolB Periplasmic compo 98.4 3E-05 6.5E-10 79.5 19.4 206 375-627 173-388 (425)
335 PF04053 Coatomer_WDAD: Coatom 98.4 0.00017 3.7E-09 74.3 24.4 223 279-587 30-264 (443)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0012 2.5E-08 70.7 31.0 313 365-693 69-502 (527)
337 KOG2114 Vacuolar assembly/sort 98.3 0.00016 3.5E-09 76.1 23.4 236 400-670 29-274 (933)
338 KOG1645 RING-finger-containing 98.3 4.5E-05 9.8E-10 72.8 17.2 261 377-681 175-461 (463)
339 KOG1897 Damage-specific DNA bi 98.3 0.011 2.4E-07 64.1 51.0 535 84-743 72-668 (1096)
340 KOG1897 Damage-specific DNA bi 98.3 0.012 2.6E-07 63.8 49.5 446 79-637 445-942 (1096)
341 KOG1645 RING-finger-containing 98.2 6.7E-05 1.4E-09 71.7 16.7 269 96-424 175-461 (463)
342 KOG2114 Vacuolar assembly/sort 98.2 0.00012 2.6E-09 77.1 20.0 215 452-690 29-252 (933)
343 KOG2066 Vacuolar assembly/sort 98.2 4.9E-05 1.1E-09 79.3 16.2 182 448-681 41-233 (846)
344 PF11768 DUF3312: Protein of u 98.2 0.0014 3.1E-08 66.8 25.8 94 530-639 237-331 (545)
345 KOG3621 WD40 repeat-containing 98.2 0.00027 6E-09 72.9 20.8 121 352-477 32-155 (726)
346 KOG1275 PAB-dependent poly(A) 98.2 3E-05 6.4E-10 81.8 13.8 183 364-583 146-340 (1118)
347 PF06977 SdiA-regulated: SdiA- 98.1 0.00082 1.8E-08 63.1 21.3 221 389-634 16-247 (248)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.013 2.9E-07 62.7 32.9 166 366-542 121-338 (527)
349 COG3391 Uncharacterized conser 98.1 0.0086 1.9E-07 61.6 30.3 275 377-694 13-296 (381)
350 PF00780 CNH: CNH domain; Int 98.1 0.0034 7.4E-08 61.8 26.6 250 404-693 5-267 (275)
351 KOG1275 PAB-dependent poly(A) 98.1 8.6E-05 1.9E-09 78.5 14.7 190 405-635 146-340 (1118)
352 PF06977 SdiA-regulated: SdiA- 98.1 0.0019 4.1E-08 60.7 22.1 197 447-667 22-239 (248)
353 PF08596 Lgl_C: Lethal giant l 98.0 0.0053 1.2E-07 62.5 26.7 275 355-671 3-328 (395)
354 COG3391 Uncharacterized conser 98.0 0.0074 1.6E-07 62.1 27.9 264 355-660 32-309 (381)
355 PF04841 Vps16_N: Vps16, N-ter 98.0 0.004 8.7E-08 64.4 25.5 228 417-690 62-296 (410)
356 PF04841 Vps16_N: Vps16, N-ter 98.0 0.016 3.5E-07 60.0 29.3 263 376-692 62-325 (410)
357 COG3386 Gluconolactonase [Carb 97.9 0.0075 1.6E-07 59.0 24.5 238 400-670 30-276 (307)
358 PF08596 Lgl_C: Lethal giant l 97.9 0.0018 3.9E-08 65.9 20.7 273 283-584 3-334 (395)
359 KOG1008 Uncharacterized conser 97.9 4.3E-06 9.4E-11 84.4 0.9 190 42-312 69-276 (783)
360 COG3490 Uncharacterized protei 97.8 0.01 2.2E-07 54.8 21.6 220 448-693 69-322 (366)
361 PF02897 Peptidase_S9_N: Proly 97.8 0.05 1.1E-06 57.2 31.0 250 398-687 127-410 (414)
362 PF00780 CNH: CNH domain; Int 97.8 0.019 4.1E-07 56.5 24.8 244 363-648 5-266 (275)
363 COG3490 Uncharacterized protei 97.7 0.0055 1.2E-07 56.4 18.5 245 356-635 70-346 (366)
364 KOG1008 Uncharacterized conser 97.7 1.9E-05 4.2E-10 79.9 3.4 186 208-425 74-276 (783)
365 PF02897 Peptidase_S9_N: Proly 97.7 0.066 1.4E-06 56.3 30.2 248 283-590 125-409 (414)
366 PRK13616 lipoprotein LpqB; Pro 97.7 0.0064 1.4E-07 65.5 22.4 162 73-310 350-524 (591)
367 PF08553 VID27: VID27 cytoplas 97.7 0.0013 2.7E-08 71.7 16.8 146 457-636 492-646 (794)
368 PF03178 CPSF_A: CPSF A subuni 97.6 0.042 9E-07 55.4 25.4 172 214-421 62-262 (321)
369 PF14870 PSII_BNR: Photosynthe 97.5 0.1 2.2E-06 50.8 32.4 157 447-634 145-301 (302)
370 PRK13616 lipoprotein LpqB; Pro 97.5 0.014 3E-07 63.0 21.3 193 447-671 350-560 (591)
371 PF03178 CPSF_A: CPSF A subuni 97.5 0.02 4.4E-07 57.7 21.6 191 468-682 2-203 (321)
372 COG3386 Gluconolactonase [Carb 97.5 0.014 3.1E-07 57.1 19.5 206 451-693 29-254 (307)
373 TIGR03074 PQQ_membr_DH membran 97.5 0.27 5.8E-06 54.9 32.4 223 365-592 194-484 (764)
374 KOG4499 Ca2+-binding protein R 97.5 0.035 7.6E-07 49.7 19.4 163 498-670 108-276 (310)
375 COG3204 Uncharacterized protei 97.5 0.048 1.1E-06 51.0 20.7 178 390-587 81-265 (316)
376 smart00320 WD40 WD40 repeats. 97.4 0.00037 8E-09 44.0 5.0 39 104-149 2-40 (40)
377 PF05096 Glu_cyclase_2: Glutam 97.4 0.13 2.7E-06 48.4 22.8 188 447-669 45-250 (264)
378 COG3204 Uncharacterized protei 97.3 0.042 9E-07 51.4 18.8 182 349-539 81-265 (316)
379 PF07995 GSDH: Glucose / Sorbo 97.3 0.099 2.2E-06 52.6 23.0 54 237-292 3-59 (331)
380 PF05694 SBP56: 56kDa selenium 97.3 0.13 2.8E-06 51.5 22.5 239 364-626 86-391 (461)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.014 3.1E-07 59.2 16.4 92 600-693 299-410 (415)
382 PF14870 PSII_BNR: Photosynthe 97.2 0.25 5.4E-06 48.2 26.5 283 233-582 14-301 (302)
383 KOG4640 Anaphase-promoting com 97.1 0.0023 5E-08 65.5 9.5 93 555-659 20-115 (665)
384 PF10647 Gmad1: Lipoprotein Lp 97.1 0.2 4.3E-06 48.1 22.3 190 448-668 25-227 (253)
385 PRK10115 protease 2; Provision 97.1 0.48 1E-05 53.0 28.2 68 78-153 131-209 (686)
386 PF08553 VID27: VID27 cytoplas 97.1 0.069 1.5E-06 58.7 20.7 144 136-310 497-646 (794)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.24 5.3E-06 50.5 23.0 87 348-434 302-408 (415)
388 smart00320 WD40 WD40 repeats. 97.1 0.0017 3.6E-08 40.8 5.3 39 639-679 2-40 (40)
389 PF10647 Gmad1: Lipoprotein Lp 97.0 0.28 6E-06 47.1 22.2 146 236-416 24-187 (253)
390 PRK10115 protease 2; Provision 96.8 1.3 2.8E-05 49.6 32.3 111 355-476 128-255 (686)
391 KOG4640 Anaphase-promoting com 96.8 0.0058 1.3E-07 62.7 8.7 79 608-689 20-100 (665)
392 PF05096 Glu_cyclase_2: Glutam 96.7 0.53 1.2E-05 44.3 22.7 197 281-517 44-249 (264)
393 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.16 3.5E-06 40.3 14.3 42 117-166 2-46 (111)
394 KOG2395 Protein involved in va 96.7 0.038 8.2E-07 55.8 13.4 146 456-636 343-499 (644)
395 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.17 3.8E-06 40.1 14.3 100 356-471 2-109 (111)
396 PF05694 SBP56: 56kDa selenium 96.5 1.1 2.3E-05 45.4 27.1 201 358-574 134-392 (461)
397 PHA02713 hypothetical protein; 96.4 0.14 3.1E-06 55.6 17.4 238 376-650 273-546 (557)
398 KOG2444 WD40 repeat protein [G 96.3 0.018 3.9E-07 51.6 7.7 105 567-683 70-179 (238)
399 KOG4441 Proteins containing BT 96.2 0.72 1.6E-05 50.1 20.7 237 404-683 283-548 (571)
400 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.3 2.8E-05 42.2 24.8 234 397-659 25-307 (336)
401 KOG2395 Protein involved in va 96.1 0.24 5.2E-06 50.3 15.2 147 135-310 348-499 (644)
402 PF12894 Apc4_WD40: Anaphase-p 96.1 0.017 3.7E-07 37.9 5.0 36 649-687 11-46 (47)
403 PHA02713 hypothetical protein; 96.1 0.32 6.9E-06 52.9 17.8 92 376-479 433-536 (557)
404 COG5276 Uncharacterized conser 96.1 1.3 2.8E-05 41.8 28.1 278 354-680 87-368 (370)
405 PF15390 DUF4613: Domain of un 96.1 2.3 5E-05 44.4 26.2 153 230-412 51-219 (671)
406 KOG2079 Vacuolar assembly/sort 96.0 0.035 7.5E-07 61.0 9.7 103 364-475 98-202 (1206)
407 KOG4499 Ca2+-binding protein R 96.0 1.1 2.5E-05 40.5 19.6 143 72-291 108-263 (310)
408 PF07995 GSDH: Glucose / Sorbo 96.0 2.1 4.6E-05 43.1 30.6 265 396-672 3-328 (331)
409 KOG2444 WD40 repeat protein [G 95.9 0.023 4.9E-07 51.0 6.4 103 43-152 70-178 (238)
410 KOG2280 Vacuolar assembly/sort 95.9 1.1 2.4E-05 47.9 19.4 194 212-434 62-256 (829)
411 KOG2079 Vacuolar assembly/sort 95.9 0.052 1.1E-06 59.7 10.1 101 566-680 98-202 (1206)
412 PRK13684 Ycf48-like protein; P 95.7 2.6 5.7E-05 42.5 29.3 158 394-583 172-329 (334)
413 TIGR03074 PQQ_membr_DH membran 95.6 4.6 9.9E-05 45.5 24.3 259 406-692 194-488 (764)
414 PRK13684 Ycf48-like protein; P 95.6 2.9 6.3E-05 42.2 30.7 158 447-636 173-330 (334)
415 KOG2280 Vacuolar assembly/sort 95.5 3.1 6.7E-05 44.8 20.9 184 256-485 64-255 (829)
416 PF12894 Apc4_WD40: Anaphase-p 95.5 0.051 1.1E-06 35.7 5.3 32 281-312 11-42 (47)
417 KOG4441 Proteins containing BT 95.5 1 2.2E-05 49.1 18.2 220 214-478 301-548 (571)
418 COG3823 Glutamine cyclotransfe 95.3 0.44 9.6E-06 42.2 11.7 177 84-299 55-247 (262)
419 PF15390 DUF4613: Domain of un 95.0 1.8 3.8E-05 45.2 16.8 157 353-538 19-187 (671)
420 TIGR02604 Piru_Ver_Nterm putat 95.0 0.76 1.6E-05 47.2 15.0 150 236-411 14-200 (367)
421 PF14761 HPS3_N: Hermansky-Pud 94.8 3 6.4E-05 37.9 16.8 161 459-637 29-214 (215)
422 PF10168 Nup88: Nuclear pore c 94.8 5.1 0.00011 44.7 21.4 91 282-386 85-182 (717)
423 TIGR02604 Piru_Ver_Nterm putat 94.7 1.3 2.7E-05 45.6 15.9 97 354-464 72-201 (367)
424 COG3823 Glutamine cyclotransfe 94.6 1.4 3E-05 39.3 13.1 181 364-573 55-247 (262)
425 PLN00033 photosystem II stabil 94.6 6.3 0.00014 40.6 31.8 155 447-634 239-396 (398)
426 PF14761 HPS3_N: Hermansky-Pud 94.3 4 8.8E-05 37.1 17.2 53 81-141 25-79 (215)
427 PF12234 Rav1p_C: RAVE protein 94.3 1.9 4.1E-05 46.5 16.0 118 502-636 33-155 (631)
428 KOG3630 Nuclear pore complex, 94.2 0.64 1.4E-05 52.0 12.4 152 498-668 100-262 (1405)
429 PF12234 Rav1p_C: RAVE protein 94.2 2.3 4.9E-05 46.0 16.3 110 557-680 31-155 (631)
430 COG4257 Vgb Streptogramin lyas 94.2 5 0.00011 37.7 21.1 240 395-681 62-305 (353)
431 TIGR03606 non_repeat_PQQ dehyd 94.0 5 0.00011 41.8 18.0 58 500-567 31-90 (454)
432 PF13449 Phytase-like: Esteras 94.0 4.9 0.00011 40.5 17.9 162 353-516 19-232 (326)
433 PF11725 AvrE: Pathogenicity f 93.5 21 0.00047 42.7 25.4 112 498-628 702-815 (1774)
434 KOG2377 Uncharacterized conser 93.5 9.4 0.0002 38.6 24.4 159 238-426 25-187 (657)
435 KOG2377 Uncharacterized conser 93.4 3.1 6.8E-05 41.8 14.4 107 555-669 66-173 (657)
436 KOG3630 Nuclear pore complex, 93.3 0.82 1.8E-05 51.2 11.3 158 447-626 101-261 (1405)
437 PF14727 PHTB1_N: PTHB1 N-term 93.1 12 0.00026 38.6 27.3 144 364-536 36-203 (418)
438 COG4257 Vgb Streptogramin lyas 93.1 7.9 0.00017 36.4 21.6 234 355-639 63-307 (353)
439 PHA03098 kelch-like protein; P 93.0 5.9 0.00013 43.4 18.0 198 363-587 293-513 (534)
440 COG4590 ABC-type uncharacteriz 92.9 0.52 1.1E-05 46.9 8.3 167 231-426 216-388 (733)
441 KOG3616 Selective LIM binding 92.7 4.3 9.2E-05 43.5 14.9 79 607-692 336-416 (1636)
442 PF14781 BBS2_N: Ciliary BBSom 92.6 5.2 0.00011 33.2 13.5 112 505-645 5-133 (136)
443 PF13449 Phytase-like: Esteras 92.6 8.4 0.00018 38.8 17.1 110 557-667 86-232 (326)
444 PHA03098 kelch-like protein; P 92.6 5.4 0.00012 43.7 17.0 153 364-540 342-514 (534)
445 PF03022 MRJP: Major royal jel 92.0 13 0.00028 36.5 22.2 206 449-668 3-254 (287)
446 PHA02790 Kelch-like protein; P 91.9 7.3 0.00016 41.7 16.6 148 508-683 317-472 (480)
447 KOG1916 Nuclear protein, conta 91.9 0.15 3.2E-06 55.1 3.6 100 212-312 109-214 (1283)
448 PF10313 DUF2415: Uncharacteri 91.6 0.94 2E-05 28.8 5.5 30 609-638 1-34 (43)
449 COG5167 VID27 Protein involved 91.6 8.7 0.00019 39.4 15.0 60 619-681 572-632 (776)
450 PF10214 Rrn6: RNA polymerase 91.6 30 0.00065 39.7 25.4 172 392-587 77-278 (765)
451 PF10313 DUF2415: Uncharacteri 91.6 0.76 1.7E-05 29.2 5.1 35 115-153 1-35 (43)
452 PF08728 CRT10: CRT10; InterP 91.6 5.3 0.00012 43.7 14.7 75 234-310 162-245 (717)
453 COG4590 ABC-type uncharacteriz 91.4 1.7 3.6E-05 43.6 9.7 165 345-541 212-390 (733)
454 KOG3616 Selective LIM binding 91.3 21 0.00046 38.5 18.0 87 380-481 323-410 (1636)
455 PHA02790 Kelch-like protein; P 91.2 13 0.00028 39.8 17.6 102 364-478 362-472 (480)
456 PF07569 Hira: TUP1-like enhan 91.2 1.4 3E-05 41.1 8.9 78 563-644 18-102 (219)
457 PF03022 MRJP: Major royal jel 91.0 9.6 0.00021 37.4 15.0 188 376-574 35-254 (287)
458 PF10168 Nup88: Nuclear pore c 91.0 6.9 0.00015 43.7 15.4 79 607-687 83-185 (717)
459 TIGR02276 beta_rpt_yvtn 40-res 90.8 1.1 2.5E-05 28.4 5.8 30 83-112 1-32 (42)
460 PF14781 BBS2_N: Ciliary BBSom 90.6 8.9 0.00019 31.9 14.4 124 286-433 3-134 (136)
461 PLN00033 photosystem II stabil 90.5 24 0.00051 36.5 31.1 150 500-672 240-392 (398)
462 PF08728 CRT10: CRT10; InterP 90.4 14 0.0003 40.7 16.4 125 448-584 102-245 (717)
463 COG5167 VID27 Protein involved 90.0 6.9 0.00015 40.1 12.8 148 454-637 475-632 (776)
464 PF07569 Hira: TUP1-like enhan 89.6 3 6.5E-05 38.9 9.6 65 361-426 18-97 (219)
465 TIGR02276 beta_rpt_yvtn 40-res 89.3 1.9 4.1E-05 27.4 5.9 39 618-657 1-41 (42)
466 PF02333 Phytase: Phytase; In 89.0 28 0.00061 35.3 23.2 211 404-645 66-299 (381)
467 KOG1916 Nuclear protein, conta 88.6 0.68 1.5E-05 50.4 5.1 113 42-156 194-328 (1283)
468 PRK13615 lipoprotein LpqB; Pro 88.5 40 0.00088 36.4 21.6 161 398-586 337-503 (557)
469 PF12657 TFIIIC_delta: Transcr 88.2 2.4 5.2E-05 37.9 7.8 36 116-152 87-122 (173)
470 PF09826 Beta_propel: Beta pro 88.0 42 0.00092 36.2 42.3 187 468-683 304-520 (521)
471 PF14727 PHTB1_N: PTHB1 N-term 87.7 37 0.00081 35.2 30.3 59 406-475 145-203 (418)
472 PF07250 Glyoxal_oxid_N: Glyox 87.5 19 0.00041 34.0 13.4 152 418-593 48-205 (243)
473 COG3292 Predicted periplasmic 87.3 42 0.00092 35.4 21.0 112 555-683 375-493 (671)
474 PF07250 Glyoxal_oxid_N: Glyox 87.3 11 0.00024 35.6 11.6 150 377-546 48-206 (243)
475 KOG1900 Nuclear pore complex, 87.0 7.8 0.00017 44.8 12.1 77 235-313 178-274 (1311)
476 PF02333 Phytase: Phytase; In 86.8 39 0.00084 34.4 23.5 192 292-539 67-292 (381)
477 PF10214 Rrn6: RNA polymerase 86.3 69 0.0015 36.8 29.8 78 233-310 77-175 (765)
478 TIGR03118 PEPCTERM_chp_1 conse 86.3 33 0.00072 33.2 22.1 236 448-703 24-301 (336)
479 KOG1898 Splicing factor 3b, su 85.6 74 0.0016 36.5 30.4 101 530-643 854-968 (1205)
480 KOG4460 Nuclear pore complex, 85.5 20 0.00043 37.2 12.9 27 354-380 104-130 (741)
481 KOG1983 Tomosyn and related SN 85.5 20 0.00044 42.0 15.0 72 607-685 197-268 (993)
482 PF10433 MMS1_N: Mono-function 85.2 61 0.0013 35.1 40.5 261 290-618 219-503 (504)
483 PF12657 TFIIIC_delta: Transcr 84.9 6.8 0.00015 35.0 8.9 30 283-312 87-122 (173)
484 PF07676 PD40: WD40-like Beta 84.5 4.6 0.0001 25.1 5.5 23 648-670 7-29 (39)
485 PF11725 AvrE: Pathogenicity f 84.1 1.1E+02 0.0024 37.3 23.6 69 555-635 702-770 (1774)
486 COG1770 PtrB Protease II [Amin 83.9 69 0.0015 34.8 27.3 261 396-695 130-410 (682)
487 COG1770 PtrB Protease II [Amin 83.2 74 0.0016 34.6 25.5 56 70-127 125-186 (682)
488 KOG1900 Nuclear pore complex, 83.1 21 0.00045 41.7 13.1 150 413-586 96-273 (1311)
489 PF11715 Nup160: Nucleoporin N 82.7 5.4 0.00012 43.7 8.8 41 115-162 215-259 (547)
490 KOG4460 Nuclear pore complex, 82.1 27 0.00058 36.3 12.2 95 283-390 105-205 (741)
491 PF07676 PD40: WD40-like Beta 82.0 6.5 0.00014 24.4 5.5 34 109-148 3-38 (39)
492 COG5290 IkappaB kinase complex 82.0 45 0.00098 36.6 14.3 268 352-660 75-347 (1243)
493 PLN02153 epithiospecifier prot 81.8 63 0.0014 32.8 19.7 64 364-428 137-229 (341)
494 PF03088 Str_synth: Strictosid 81.5 2.9 6.4E-05 32.1 4.3 51 208-260 31-81 (89)
495 COG5276 Uncharacterized conser 81.0 54 0.0012 31.5 29.9 275 281-636 86-368 (370)
496 KOG2247 WD40 repeat-containing 80.7 0.29 6.2E-06 49.3 -1.7 142 501-671 37-180 (615)
497 PF08801 Nucleoporin_N: Nup133 80.6 20 0.00044 37.7 11.9 31 282-312 190-220 (422)
498 KOG1898 Splicing factor 3b, su 80.6 1.2E+02 0.0025 35.0 35.5 188 469-682 854-1049(1205)
499 COG3292 Predicted periplasmic 79.5 90 0.002 33.2 22.8 324 234-639 163-493 (671)
500 smart00564 PQQ beta-propeller 79.2 3.9 8.5E-05 24.2 3.6 25 663-689 8-32 (33)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-56 Score=440.04 Aligned_cols=565 Identities=15% Similarity=0.185 Sum_probs=448.5
Q ss_pred EeecCCcceeEEEEecCCCeEEEEecCCccee-ee--ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeee
Q 040987 35 IERKPRSRSFIFAVARSSGLCRTAEYPAVNSK-MI--RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL 110 (762)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~-~~--~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l 110 (762)
..-++.++ .+++... ..|...|+.++... .. ..-...+++ ++++||+++|+++. ...+++|++.+|++++.+
T Consensus 25 ~~~s~nG~--~L~t~~~-d~Vi~idv~t~~~~l~s~~~ed~d~ita-~~l~~d~~~L~~a~rs~llrv~~L~tgk~irsw 100 (775)
T KOG0319|consen 25 VAWSSNGQ--HLYTACG-DRVIIIDVATGSIALPSGSNEDEDEITA-LALTPDEEVLVTASRSQLLRVWSLPTGKLIRSW 100 (775)
T ss_pred eeECCCCC--EEEEecC-ceEEEEEccCCceecccCCccchhhhhe-eeecCCccEEEEeeccceEEEEEcccchHhHhH
Confidence 44455544 5555442 34667888887773 22 334566775 99999999999999 699999999999999999
Q ss_pred cC-CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceE
Q 040987 111 EG-HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 111 ~~-h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
+. |+++|.-++|+|.+ .+|++|+.|+.++|||+..+.+.+.|++|. .+.++.|
T Consensus 101 Ka~He~Pvi~ma~~~~g-------~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F------------------ 155 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTG-------TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLF------------------ 155 (775)
T ss_pred hhccCCCeEEEEEcCCC-------ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEe------------------
Confidence 98 99999999999999 688999999999999999999999999988 5555555
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCch
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVE 267 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~ 267 (762)
-+... ...+++|..|+.+++||+.+....-.....|.+.|++++|++|+..+. +|.|..+.|||+...+
T Consensus 156 --~~~~~--------~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~ 225 (775)
T KOG0319|consen 156 --HPHWN--------RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK 225 (775)
T ss_pred --CCccc--------hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhh
Confidence 11111 111278999999999999976663367788999999999999998776 6789999999996665
Q ss_pred hhhheeeeeeeccCcCeEEEEEcCC-----CcEEEEeecCCeEEEEeccCCceeeccccc----ccccc---------cc
Q 040987 268 AERVVMRKITLHHTKKLTVLAFHPT-----QRIVAAGDVTGRILIWRGFGDRTFATNDNK----MNLNL---------MN 329 (762)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~----~~~~~---------~~ 329 (762)
.. +. ..-...+.++.+-++ +.++.+++.+|.+++||.++++....-... ..... ..
T Consensus 226 ~l-----~~-lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 226 KL-----KT-LPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred hh-----he-echhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 53 22 233456778888777 679999999999999999887543322111 10000 01
Q ss_pred cccCCCCcccCCccccceeeeccccceeEEEE-ecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCe
Q 040987 330 NEEERPGVRDNDDADLCTTWHWHPSEVSVLIF-SSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSL 408 (762)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (762)
..++...+....+.++.+.+-|..+.|.+++| .|+.++++.++..+.+++|+..+..+..+.+|...|.++....+|-+
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 11112222233455666777888899999998 46778999999999999999999999999999999999997778899
Q ss_pred EEEEecCCcEEEEEcCCce----EEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceee
Q 040987 409 SSISCADNQVHLLKMPSME----IIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISE 483 (762)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~ 483 (762)
|++++.|+++++|.++.+. ++....+|. +.|.+++++..+ .++++++.|+++++|++...+....
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~----------~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHT----------NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhcccc----------cccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 9999999999999885432 334455665 788999997654 5799999999999999987333222
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
+...........|...|++++++|+.+++|+++ .|.+.++|+++.......+ .|| ...|.++.|
T Consensus 450 -~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S---------qDktaKiW~le~~~l~~vL-----sGH-~RGvw~V~F 513 (775)
T KOG0319|consen 450 -PIVLTCRYTERAHDKDINCVAIAPNDKLIATGS---------QDKTAKIWDLEQLRLLGVL-----SGH-TRGVWCVSF 513 (775)
T ss_pred -cceehhhHHHHhhcccccceEecCCCceEEecc---------cccceeeecccCceEEEEe-----eCC-ccceEEEEe
Confidence 111100001112377899999999999999999 8999999999966655554 799 999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEE
Q 040987 564 HPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLV 642 (762)
Q Consensus 564 spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~ 642 (762)
+|..+.++++|.|++|+||.+.+..+.+.+ .+|...|..+.|-.+|+.|++++ ||-+++|++++++|+
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~-----------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTF-----------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeee-----------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 999999999999999999999977766555 58999999999999999999987 999999999999999
Q ss_pred EEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 643 AVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 643 ~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.++.+|++.|++++-++++.+++||+.||. |.+|.=.|.
T Consensus 583 ~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~--i~~wkD~Te 621 (775)
T KOG0319|consen 583 MTLDAHNDRVWALSVSPLLDMFVTGGGDGR--IIFWKDVTE 621 (775)
T ss_pred hhhhhccceeEEEeecCccceeEecCCCeE--EEEeecCcH
Confidence 999999999999999999999999999998 999965543
No 2
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-51 Score=388.74 Aligned_cols=542 Identities=14% Similarity=0.194 Sum_probs=423.2
Q ss_pred cccccccccceEEEEeeeeeE-EEEEEeecCCcceeEEEEecCCCeEEEEecCCccee---eeecCcccccCCceeecCC
Q 040987 10 RASSHQSIQNKFIISKLKAIK-IHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSK---MIRGGRSYVSSPPAFSNDV 85 (762)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~---~~~~h~~~v~~~~~~s~dg 85 (762)
++.+-..++++....-..++. ......-+|. +.|+|+|...|.||+|+......+ .++--.++|.. ++|+.|+
T Consensus 39 ksv~ir~i~~~~~~~iYtEH~~~vtVAkySPs--G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~D-i~Wd~ds 115 (603)
T KOG0318|consen 39 KSVIIRNIDNPASVDIYTEHAHQVTVAKYSPS--GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKD-ISWDFDS 115 (603)
T ss_pred CEEEEEECCCccceeeeccccceeEEEEeCCC--ceEEeecCCcCcEEEEeccCcceeeeeeeeeccccccc-ceeCCCC
Confidence 333333444444333333333 3334444555 889999999999999998874443 34566789997 9999999
Q ss_pred CEEEEEeC-----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEE
Q 040987 86 KRLLVCTS-----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTID 160 (762)
Q Consensus 86 ~~la~~~~-----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~ 160 (762)
++|++.++ |.+..|| +|.-+..+.||...|++++|-|..+ --++||++|++|.+++=.-.+...++.
T Consensus 116 ~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRP------fRi~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 116 KRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRP------FRIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred cEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCc------eEEEeccCCCeEEEeeCCCeeeeeccc
Confidence 99998884 5788888 7888999999999999999999986 457799999999999876667777787
Q ss_pred ecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee---ccCC
Q 040987 161 VKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL---AEMK 236 (762)
Q Consensus 161 ~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~---~~~~ 236 (762)
.|. -|.++.| ++|+..- ++.+.||.+.+||-.+|+.+ ..+. +|.+
T Consensus 188 ~HskFV~~VRy--------sPDG~~F----------------------at~gsDgki~iyDGktge~v-g~l~~~~aHkG 236 (603)
T KOG0318|consen 188 EHSKFVNCVRY--------SPDGSRF----------------------ATAGSDGKIYIYDGKTGEKV-GELEDSDAHKG 236 (603)
T ss_pred ccccceeeEEE--------CCCCCeE----------------------EEecCCccEEEEcCCCccEE-EEecCCCCccc
Confidence 787 7778877 5666532 67889999999999999998 4444 7999
Q ss_pred CceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccC--cCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 237 EPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHT--KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 237 ~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
.|.+++|+||++.++ ++.|.+++|||+.+.++. ..+..+.. +.-..+-|. ...|++-+-+|.|.+++....
T Consensus 237 sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv----~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 237 SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV----STWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred cEEEEEECCCCceEEEecCCceEEEEEeeccceE----EEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 999999999999998 568999999999998754 22222222 344555665 446888999999999998554
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc--C
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--P 391 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~ 391 (762)
.+...+.+|...|+++..++|+++|++|+.||.|.-|+..++..-.+ .
T Consensus 311 ------------------------------~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~ 360 (603)
T KOG0318|consen 311 ------------------------------SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK 360 (603)
T ss_pred ------------------------------ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc
Confidence 35578999999999999999999999999999999999999987655 5
Q ss_pred CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE--ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce
Q 040987 392 RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI--SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC 469 (762)
Q Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 469 (762)
.|...|.+++.+..+. +++.+.|.++++.++......... +-. ....+++..+++.+++..+.++.
T Consensus 361 ~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg-----------~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 361 GHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLG-----------SQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccceeecC-----------CCceeEEEcCCCCEEEEEecCcE
Confidence 6888999999876555 455668999999988653322221 111 23358899999887777776664
Q ss_pred EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 470 IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
+.+=|... +.++.. .....+++++|+++.+++|+ .|+.|++|.+.......+..
T Consensus 429 v~l~~~~~---~~~~~~-----------~y~~s~vAv~~~~~~vaVGG---------~Dgkvhvysl~g~~l~ee~~--- 482 (603)
T KOG0318|consen 429 VLLQDQTK---VSSIPI-----------GYESSAVAVSPDGSEVAVGG---------QDGKVHVYSLSGDELKEEAK--- 482 (603)
T ss_pred EEEecCCc---ceeecc-----------ccccceEEEcCCCCEEEEec---------ccceEEEEEecCCcccceee---
Confidence 44433332 222221 44578999999999999999 89999999999876543322
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E 628 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d 628 (762)
...| .+.|++++||||+.+||++...+.+.+||..+.+.... .| ..|...|.+++|||+.+++|+|+ |
T Consensus 483 ~~~h-~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~----~w------~FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 483 LLEH-RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN----RW------AFHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred eecc-cCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc----ee------eeeeeeEEEEEeCCCceEEEecccc
Confidence 2578 99999999999999999999999999999998876322 33 34789999999999999999999 9
Q ss_pred CeEEEEeCCCC-eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 629 TVITLWDPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 629 ~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
..|.||+++.. +.+.....|...|+.+.|-.+ ..|++++.|.. |++|++.
T Consensus 552 t~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~--iK~W~v~ 602 (603)
T KOG0318|consen 552 TNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDAN--IKVWNVT 602 (603)
T ss_pred ceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcce--eEEeccc
Confidence 99999999875 345555679989999999875 57999999998 9999874
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-51 Score=405.81 Aligned_cols=546 Identities=15% Similarity=0.169 Sum_probs=418.8
Q ss_pred cceEEEEeeeeeEEEEEEeecCCcceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEE
Q 040987 18 QNKFIISKLKAIKIHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVS 97 (762)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~ 97 (762)
.|+.+.-.+...........+|+ +.++.+-.+.|.+.+.++...........+..|.+ +.|||||+++|.+.++.+.
T Consensus 44 nN~S~Tl~~e~~~NI~~ialSp~--g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~-i~fSPng~~fav~~gn~lq 120 (893)
T KOG0291|consen 44 NNKSYTLPLETRYNITRIALSPD--GTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGA-IKFSPNGKFFAVGCGNLLQ 120 (893)
T ss_pred CCcceeEEeecCCceEEEEeCCC--ceEEEEEcCCCcEEEEecccceeeEEEeecCccce-EEECCCCcEEEEEecceeE
Confidence 33334444444455556677777 66777788999999999998777777777889997 9999999999999999999
Q ss_pred EEEcccc--------eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcce--EEEEEecc-ceE
Q 040987 98 IFSTSTG--------LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPEL--LKTIDVKF-SIF 166 (762)
Q Consensus 98 iwd~~~~--------~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~--~~~~~~~~-~v~ 166 (762)
||..... .+.+++.||...|+++.|+.|. ++|++||.|.++++|+++..+- ...+.+|. .|.
T Consensus 121 iw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS-------r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vv 193 (893)
T KOG0291|consen 121 IWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS-------RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVV 193 (893)
T ss_pred EEecCcchhcccCcceEeeeecCCccceeEEEeccCC-------ceEEeccccceEEEEEeccccccceEeccCCCcceE
Confidence 9997432 2457788999999999999999 7899999999999999987665 33344444 444
Q ss_pred EEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCC
Q 040987 167 SMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246 (762)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spd 246 (762)
+..| +.+.... ++-+.||.+.+|.................. +.|
T Consensus 194 acfF--------~~~~~~l----------------------~tvskdG~l~~W~~~~~P~~~~~~~kd~eg------~~d 237 (893)
T KOG0291|consen 194 ACFF--------GANSLDL----------------------YTVSKDGALFVWTCDLRPPELDKAEKDEEG------SDD 237 (893)
T ss_pred EEEe--------ccCcceE----------------------EEEecCceEEEEEecCCCcccccccccccc------ccc
Confidence 4433 1111110 334566666666544321110000000000 000
Q ss_pred CCEEEEEeC-CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccc
Q 040987 247 GKYFGIRKQ-RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNL 325 (762)
Q Consensus 247 g~~la~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 325 (762)
....-=+.. -.=.+|... .+..+......|++.+|++..+.||+|-..|...+|.+.+-
T Consensus 238 ~~~~~~~Eek~~~~~~~k~--------~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f------------ 297 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKIFWYKT--------KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF------------ 297 (893)
T ss_pred ccccccchhhhcceEEEEE--------EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCc------------
Confidence 000000000 000011110 01233344578999999999999999999999999998543
Q ss_pred cccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC-CeEEEEecCCCcee-ccCCCCCCeEEEEeC
Q 040987 326 NLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE-GVLVVWQLDTGKKK-FLPRIGSPLLYFTES 403 (762)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~i~~wd~~~~~~~-~~~~~~~~v~~~~~s 403 (762)
.+++.+.-....|..++|+..|.+|+.|+.. |++-+|+..+...+ ...+|-..+.+++++
T Consensus 298 ------------------~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS 359 (893)
T KOG0291|consen 298 ------------------NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYS 359 (893)
T ss_pred ------------------eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEEC
Confidence 3456666666789999999999999998865 89999999887764 567788999999999
Q ss_pred CCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceee
Q 040987 404 PDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483 (762)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 483 (762)
|||+++++|+.||.|+|||..++-+..+|..|. ..|+.+.|+..|+.+++.+-||+|+.||+...+..++
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt----------s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT----------SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCceEEEEeccCC----------CceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 999999999999999999999999999999998 8999999999999999999999999999999888877
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
+..+. .....+++..|.|..+.+|+. +.-.|.+|++++++.+-.+ .|| .++|.+++|
T Consensus 430 ft~P~---------p~QfscvavD~sGelV~AG~~--------d~F~IfvWS~qTGqllDiL-----sGH-EgPVs~l~f 486 (893)
T KOG0291|consen 430 FTSPE---------PIQFSCVAVDPSGELVCAGAQ--------DSFEIFVWSVQTGQLLDIL-----SGH-EGPVSGLSF 486 (893)
T ss_pred ecCCC---------ceeeeEEEEcCCCCEEEeecc--------ceEEEEEEEeecCeeeehh-----cCC-CCcceeeEE
Confidence 76543 345789999999999999984 5568999999999887665 799 999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEEccccc-ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 564 HPNRRAAVSSSYGGDFKVWICNDEL-QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 564 spd~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
+|++..|+++++|.+|++||+-... ....+ .+...+..++|+|||+-||+++ ||.|.+||.+.+..
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl------------~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETL------------EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeE------------eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 9999999999999999999986542 22222 2567899999999999999999 99999999988766
Q ss_pred EEEeccc--------------------cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 642 VAVIGET--------------------LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 642 ~~~l~~~--------------------~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
+..+.+- ....+.+++|+||..|++||..+. |++|++.++-++..++...+
T Consensus 555 ~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~--iCiY~v~~~vllkkfqiS~N 625 (893)
T KOG0291|consen 555 VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS--ICIYDVPEGVLLKKFQISDN 625 (893)
T ss_pred eccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc--EEEEECchhheeeeEEeccc
Confidence 6444321 234889999999999999999998 99999999999999887766
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8e-53 Score=415.13 Aligned_cols=540 Identities=15% Similarity=0.211 Sum_probs=406.2
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccceE-Eeee-cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceE
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTGLQ-ISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~~~-~~~l-~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~ 156 (762)
++||++|+.|++.....|.+-|++++.. +... ..-...+++++.+||+ .+|++++....+++|++.+|+++
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~-------~~L~~a~rs~llrv~~L~tgk~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDE-------EVLVTASRSQLLRVWSLPTGKLI 97 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCc-------cEEEEeeccceEEEEEcccchHh
Confidence 7899999999999999999999999987 4433 3456789999999999 78899999999999999999999
Q ss_pred EEEEe-cc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeecc
Q 040987 157 KTIDV-KF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAE 234 (762)
Q Consensus 157 ~~~~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~ 234 (762)
+..+. |. |+..|+|. +.+. + +++|+.|+.+++||+..+.+. ..+.+|
T Consensus 98 rswKa~He~Pvi~ma~~--------~~g~----L------------------lAtggaD~~v~VWdi~~~~~t-h~fkG~ 146 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFD--------PTGT----L------------------LATGGADGRVKVWDIKNGYCT-HSFKGH 146 (775)
T ss_pred HhHhhccCCCeEEEEEc--------CCCc----e------------------EEeccccceEEEEEeeCCEEE-EEecCC
Confidence 99988 55 89888771 1110 1 178999999999999999999 889999
Q ss_pred CCCceEEEECCCCCE--EEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 235 MKEPQVITISSSGKY--FGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 235 ~~~v~~~~~spdg~~--la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.+.|.++.|.|+-.+ |++ +.|+.+++||+.+... .......|...|++++|++|+..+++++.|..+.+||+.
T Consensus 147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~ 222 (775)
T KOG0319|consen 147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV 222 (775)
T ss_pred CceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh
Confidence 999999999998765 444 4799999999996553 126677899999999999999999999999999999985
Q ss_pred CCceeecc---cccccccccccccCCC-Cccc-CCccccceeeec--------c----ccceeEEEEecCCCEEEEEecC
Q 040987 312 GDRTFATN---DNKMNLNLMNNEEERP-GVRD-NDDADLCTTWHW--------H----PSEVSVLIFSSDGAYLYSGGKE 374 (762)
Q Consensus 312 ~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--------h----~~~v~~~~~s~~g~~l~s~~~d 374 (762)
..+..... +............... .... .......+.+.. . ...+..+...+..+.++....|
T Consensus 223 ~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtae 302 (775)
T KOG0319|consen 223 QYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAE 302 (775)
T ss_pred hhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEcc
Confidence 54332111 1100000000000000 0000 000000000000 0 0002222222222233333344
Q ss_pred CeEEEEecCCCcee-ccCCCCCCeEEEEe-CCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 375 GVLVVWQLDTGKKK-FLPRIGSPLLYFTE-SPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 375 g~i~~wd~~~~~~~-~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.++.++|.++.+.. .+.+..+.|..+.| .|+.++++++++.+.+++|+..+..+. .+.+|. ..|.++
T Consensus 303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~----------e~vlSL 371 (775)
T KOG0319|consen 303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT----------EAVLSL 371 (775)
T ss_pred ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch----------hheeee
Confidence 44444444444442 34455567777776 677889999999999999998877665 778877 788999
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEE
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i 531 (762)
....+|-+|++++.|.++++|.+.++...........+| ...|.+++++..+ .+|++++ .|.++
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH------~~svgava~~~~~asffvsvS---------~D~tl 436 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH------TNSVGAVAGSKLGASFFVSVS---------QDCTL 436 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc------ccccceeeecccCccEEEEec---------CCceE
Confidence 877788899999999999999995554333333333333 7889999997755 5788888 99999
Q ss_pred EEEEecCCCceeEEEEE----eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 532 KFWVSGTQNKEFTLSTI----VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 532 ~iwd~~~~~~~~~~~~~----~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
++|++...+.......+ ....| ...|++++++|+.+++|+||.|++.+||++........ +.+|
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aH-dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-----------LsGH 504 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAH-DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-----------LSGH 504 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhh-cccccceEecCCCceEEecccccceeeecccCceEEEE-----------eeCC
Confidence 99999873332211111 23578 89999999999999999999999999999996665544 4689
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
...|.++.|+|..+.+|+++ |++|+||.+++..|+.++.||...|..+.|-.+|+.|+|++.||. +++|++++++.+
T Consensus 505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl--iKlWnikt~eC~ 582 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL--IKLWNIKTNECE 582 (775)
T ss_pred ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc--EEEEeccchhhh
Confidence 99999999999999999998 999999999999999999999999999999999999999999998 999999999999
Q ss_pred eEEEEeecceeeee
Q 040987 687 WSYLLHVEGQFGYA 700 (762)
Q Consensus 687 ~~~~~~~~~~~~~~ 700 (762)
.++..|.+...+..
T Consensus 583 ~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 583 MTLDAHNDRVWALS 596 (775)
T ss_pred hhhhhccceeEEEe
Confidence 99999987554443
No 5
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-52 Score=408.99 Aligned_cols=560 Identities=15% Similarity=0.170 Sum_probs=437.0
Q ss_pred eeEEEEecCCCeEEEEecCCc---ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCcccee
Q 040987 43 SFIFAVARSSGLCRTAEYPAV---NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVT 118 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~---~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~ 118 (762)
+.++|+ ...-.|.+||+.++ +.+....-+..|+| +.-++|.-+||.|. ||.|+||+..++..+-++.||..+|+
T Consensus 34 Gr~va~-~a~E~vn~WdlRtge~~~~l~~~~~k~evt~-l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 34 GRAVAV-SALEQVNIWDLRTGEIEKKLILLKKKAEVTC-LRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CcEEEE-eccccEeEEeeecchhhhhhhhhcccceEEE-eeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 445555 22366789999988 33444556678887 88889999999999 89999999999999999999999999
Q ss_pred EEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeecc
Q 040987 119 TVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTR 197 (762)
Q Consensus 119 ~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (762)
++.|...| ..|+|||.|+.|.+||+-...-+..+++|. .++.+-|- .+.
T Consensus 112 ~l~fd~~G-------~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~--------~~~--------------- 161 (888)
T KOG0306|consen 112 TLKFDKIG-------TRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL--------NGD--------------- 161 (888)
T ss_pred EEEEcccC-------ceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc--------CCC---------------
Confidence 99999999 678899999999999999999999999987 66655441 000
Q ss_pred ccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhh--------
Q 040987 198 ETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAE-------- 269 (762)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~-------- 269 (762)
.|.++.+.|+.|++||+++..|. .....|.+.++++++.+ ...++++.++.+.+|++....-.
T Consensus 162 -------~~lvS~sKDs~iK~WdL~tqhCf-~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s 232 (888)
T KOG0306|consen 162 -------SFLVSVSKDSMIKFWDLETQHCF-ETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNRYIS 232 (888)
T ss_pred -------eEEEEeccCceEEEEecccceee-eEEecccceEEEEEEec-ceEEEEecCCceEEEEeecccccccccccce
Confidence 01167789999999999999999 77888999999999998 44556789999999999321100
Q ss_pred hheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecc------------------------------
Q 040987 270 RVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATN------------------------------ 319 (762)
Q Consensus 270 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~------------------------------ 319 (762)
......+.....+....++..+++++++.-+.|..+.++.+.........
T Consensus 233 ~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~ 312 (888)
T KOG0306|consen 233 TKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIK 312 (888)
T ss_pred eeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHH
Confidence 01222344455566667777888899999899999999987554211000
Q ss_pred --------cccccccccccccCC-------------CCccc--CCcccc----ceeeeccccceeEEEEecCCCEEEEEe
Q 040987 320 --------DNKMNLNLMNNEEER-------------PGVRD--NDDADL----CTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 320 --------~~~~~~~~~~~~~~~-------------~~~~~--~~~~~~----~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
............... ..+.. ...+++ ...+.+|...|.+++++.+...+++++
T Consensus 313 r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga 392 (888)
T KOG0306|consen 313 RLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA 392 (888)
T ss_pred HHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC
Confidence 000000000000000 00000 000111 134678999999999999987777765
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
. +.+++|+.++.++....... .+.+..|-|.+++++.|...|.+.+||+.+...+.++..|. +.+.++
T Consensus 393 ~-~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd----------gaIWsi 460 (888)
T KOG0306|consen 393 G-ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD----------GAIWSI 460 (888)
T ss_pred C-CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc----------cceeee
Confidence 4 78999999999987655554 78889999999999999999999999999999988888877 899999
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCC-----CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDD-----RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
+.+||++.+++++.|.+|++||..-- .....+... |...-.....|.|+.+||||++||++- -
T Consensus 461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~---~~rtLel~ddvL~v~~Spdgk~LaVsL---------L 528 (888)
T KOG0306|consen 461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK---HTRTLELEDDVLCVSVSPDGKLLAVSL---------L 528 (888)
T ss_pred eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec---cceEEeccccEEEEEEcCCCcEEEEEe---------c
Confidence 99999999999999999999997421 111111110 000011256799999999999999998 8
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
|+++++|-+++-+....+ .|| .-+|.|+..|||++++++||.|.+|++|-++-|.+.+.+ .+|
T Consensus 529 dnTVkVyflDtlKFflsL-----YGH-kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-----------fAH 591 (888)
T KOG0306|consen 529 DNTVKVYFLDTLKFFLSL-----YGH-KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-----------FAH 591 (888)
T ss_pred cCeEEEEEecceeeeeee-----ccc-ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-----------hcc
Confidence 899999999988765554 799 999999999999999999999999999999988865554 589
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
...|.++.|-|+..++.+++ |+.|+-||-+..++++.+.+|...|++++.+|+|.+++++|.|.. |++|......+.
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s--IRlwE~tde~~~ 669 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS--IRLWERTDEILI 669 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce--eEeeeccCccee
Confidence 99999999999999999998 999999999999999999999999999999999999999999998 999987664443
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-49 Score=376.02 Aligned_cols=544 Identities=13% Similarity=0.100 Sum_probs=406.7
Q ss_pred ceEEEEeeee--eEEEEEEeecCCcceeEEEEecCCCeEEEEecCCccee-eeecCcccccCCceeecCCCEEEEEe-CC
Q 040987 19 NKFIISKLKA--IKIHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSNDVKRLLVCT-SN 94 (762)
Q Consensus 19 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~dg~~la~~~-~~ 94 (762)
.+.+...+.. +.....+.-.|..+.+++.-| ..|.+-++++.... .+.+|...++- ..|||.|-|+|+|. .|
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nG---ksv~ir~i~~~~~~~iYtEH~~~vtV-AkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTNG---KSVIIRNIDNPASVDIYTEHAHQVTV-AKYSPSGFYIASGDVSG 81 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeCC---CEEEEEECCCccceeeeccccceeEE-EEeCCCceEEeecCCcC
Confidence 3344444433 333444444555444333333 55666777765554 44789888886 99999999999999 69
Q ss_pred EEEEEEcccce-E-EeeecCCccceeEEEEeCCCCcccceeeeEEee-ecCCeEEEEeCCCcceEEEEEecc-ceEEEee
Q 040987 95 TVSIFSTSTGL-Q-ISSLEGHKAPVTTVIVVPASTPATKILSYCWTA-SLDGTIKYWDFSVPELLKTIDVKF-SIFSMVI 170 (762)
Q Consensus 95 ~i~iwd~~~~~-~-~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~-s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~ 170 (762)
.|+|||....+ . -.+++.-.++|..++|++|++ +++|+| +.++-.+++-+++|..+..+.+|. .+.++.|
T Consensus 82 ~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~------RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~ 155 (603)
T KOG0318|consen 82 KVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSK------RIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDF 155 (603)
T ss_pred cEEEEeccCcceeeeeeeeecccccccceeCCCCc------EEEEEecCccceeEEEEecCCCccceeeccceeEeeeec
Confidence 99999985533 2 246777889999999999996 444555 345555666666899999999998 6777755
Q ss_pred cccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE
Q 040987 171 PSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF 250 (762)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 250 (762)
...+|..+ ++|+.|+.|.+|+-.-.+-. .....|..-|+|+.|+|||.++
T Consensus 156 ----------KpsRPfRi-------------------~T~sdDn~v~ffeGPPFKFk-~s~r~HskFV~~VRysPDG~~F 205 (603)
T KOG0318|consen 156 ----------KPSRPFRI-------------------ATGSDDNTVAFFEGPPFKFK-SSFREHSKFVNCVRYSPDGSRF 205 (603)
T ss_pred ----------cCCCceEE-------------------EeccCCCeEEEeeCCCeeee-ecccccccceeeEEECCCCCeE
Confidence 22222111 78999999999987666555 5667789999999999999999
Q ss_pred E-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccc
Q 040987 251 G-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMN 329 (762)
Q Consensus 251 a-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 329 (762)
| ++.|+++.+||-.+++.. -...-..+|.+.|.+++|+||++.+++++.|.+++|||+.+.+...
T Consensus 206 at~gsDgki~iyDGktge~v--g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~------------ 271 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEKV--GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS------------ 271 (603)
T ss_pred EEecCCccEEEEcCCCccEE--EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE------------
Confidence 8 679999999999999865 1111134899999999999999999999999999999998875443
Q ss_pred cccCCCCcccCCccccceeeecc---ccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCC
Q 040987 330 NEEERPGVRDNDDADLCTTWHWH---PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPD 405 (762)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~ 405 (762)
++.-. .+.-..+.|. ...|++.+.+|+|.+++....... .+.+|...|+++..++|
T Consensus 272 ------------------t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 272 ------------------TWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred ------------------EeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 22211 1223345564 558999999999999999888764 57789999999999999
Q ss_pred CCeEEEEecCCcEEEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 406 PSLSSISCADNQVHLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
+++|++++.||.|.-|+..++..-+.. ++|. ..|.+++-+..+. +++.+.|.++++.++..+......
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~----------nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT----------NQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred CCEEEeeccCceEEEEecCCcccccccccccc----------ceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc
Confidence 999999999999999999987665543 4444 7888888876554 677788889999988655433222
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
.... .....+++..+++.+++.+. . ..|.+..-.+. ...... .-...+++++
T Consensus 401 ~~~l---------g~QP~~lav~~d~~~avv~~---------~-~~iv~l~~~~~--~~~~~~-------~y~~s~vAv~ 452 (603)
T KOG0318|consen 401 VVKL---------GSQPKGLAVLSDGGTAVVAC---------I-SDIVLLQDQTK--VSSIPI-------GYESSAVAVS 452 (603)
T ss_pred eeec---------CCCceeEEEcCCCCEEEEEe---------c-CcEEEEecCCc--ceeecc-------ccccceEEEc
Confidence 1111 23345888999987777775 2 34444442222 222211 3456789999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE
Q 040987 565 PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA 643 (762)
Q Consensus 565 pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~ 643 (762)
|++..++.|+.|+.|+||.+......... ....|.+.|++++||||+.+||++. .+.+.+||+++.+...
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~---------~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~ 523 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDELKEEA---------KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT 523 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCccccee---------eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec
Confidence 99999999999999999999886653321 2345899999999999999999999 9999999999987644
Q ss_pred E-eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 644 V-IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 644 ~-l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
. ..-|...|.+++|+|+.+++|++|.|.. |.||+++.....
T Consensus 524 ~~w~FHtakI~~~aWsP~n~~vATGSlDt~--Viiysv~kP~~~ 565 (603)
T KOG0318|consen 524 NRWAFHTAKINCVAWSPNNKLVATGSLDTN--VIIYSVKKPAKH 565 (603)
T ss_pred ceeeeeeeeEEEEEeCCCceEEEeccccce--EEEEEccChhhh
Confidence 3 3449999999999999999999999998 999999875443
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-51 Score=369.30 Aligned_cols=327 Identities=20% Similarity=0.284 Sum_probs=293.2
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.|.|++|+|+|+.|++|+.|.++++||+.+.. +..+.++|..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT------------------------------p~~t~KgH~~ 158 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET------------------------------PLFTCKGHKN 158 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC------------------------------cceeecCCcc
Confidence 5567999999999999999999999999999999997763 4578999999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee--ccCCCCCCeEEEEeCC-----CCCeEEEEecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK--FLPRIGSPLLYFTESP-----DPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
.|.+++|+|||+.|++|+.||+|++||.++|+.. .+.+|...|++++|.| ..++|++++.||.++|||+..+.
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 9999999999999999999999999999999884 6889999999999965 67899999999999999999999
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
++..+.+|. ..|+++.|--+| +|++++.|++|++|+...+....++.. | ...|+.++++
T Consensus 239 ~~~~lsgHT----------~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG----H------ahwvN~lals 297 (480)
T KOG0271|consen 239 CVRTLSGHT----------ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG----H------AHWVNHLALS 297 (480)
T ss_pred EEEEeccCc----------cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc----c------chheeeeecc
Confidence 999999998 788999998765 899999999999999998876665543 2 5567776665
Q ss_pred -----------cCCC-------------------------eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 508 -----------QDGS-------------------------LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 508 -----------p~g~-------------------------~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
|.++ .|++++ .|.++.+|+....+....- ..
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs---------Dd~tlflW~p~~~kkpi~r----mt 364 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS---------DDFTLFLWNPFKSKKPITR----MT 364 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec---------CCceEEEecccccccchhh----hh
Confidence 3333 499998 8999999998766543222 26
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCe
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETV 630 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~ 630 (762)
+| ..-|+.+.||||++++|+++.|..|++||..+|+.+..+ .+|-..|+.++||.|.++|++|+ |.+
T Consensus 365 gH-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-----------RGHv~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 365 GH-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-----------RGHVAAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred ch-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-----------hhccceeEEEEeccCccEEEEcCCCce
Confidence 89 999999999999999999999999999999999988776 47999999999999999999999 999
Q ss_pred EEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 631 ITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 631 i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+++|++.+.++...|.||.+.|.++.|+|||+.+++++.|.. +++|.
T Consensus 433 LKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv--~~lw~ 479 (480)
T KOG0271|consen 433 LKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKV--LRLWR 479 (480)
T ss_pred EEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceE--EEeec
Confidence 999999999999999999999999999999999999999998 99994
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-51 Score=369.92 Aligned_cols=331 Identities=18% Similarity=0.245 Sum_probs=293.9
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCe
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGT 144 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~ 144 (762)
..+.||.+.|.| ++|||+|++||+|+ |.++++||+.|..++++.++|...|.|++|+||| +.||||+.||+
T Consensus 109 sS~~GH~e~Vl~-~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-------k~iASG~~dg~ 180 (480)
T KOG0271|consen 109 SSIAGHGEAVLS-VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-------KKIASGSKDGS 180 (480)
T ss_pred cccCCCCCcEEE-EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-------chhhccccCCe
Confidence 357999999998 99999999999999 7999999999999999999999999999999999 78899999999
Q ss_pred EEEEeCCCcceE-EEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 145 IKYWDFSVPELL-KTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 145 i~vWd~~~~~~~-~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
|++||.++|+++ +.+.+|. .|+++++..+-..+.+. . +|+++.||.++|||+.
T Consensus 181 I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r---~----------------------las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR---R----------------------LASSSKDGSVRIWDTK 235 (480)
T ss_pred EEEecCCCCCcccccccCcccceeEEeecccccCCCcc---c----------------------eecccCCCCEEEEEcc
Confidence 999999998766 5688887 89988773322211110 0 1889999999999999
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc-----------C
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH-----------P 291 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------p 291 (762)
.+.++ ..+.+|+..|+|+.|-.+|-+..++.|++|++|+...+.+. +.+.+|...|+.++.+ |
T Consensus 236 ~~~~~-~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~-----r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 236 LGTCV-RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLC-----RELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred CceEE-EEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHH-----Hhhcccchheeeeeccchhhhhcccccc
Confidence 99999 78899999999999988775444668999999999998877 8889999999999987 2
Q ss_pred CC-------------------------cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccc
Q 040987 292 TQ-------------------------RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLC 346 (762)
Q Consensus 292 ~~-------------------------~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (762)
.+ ..|++|+.|.++.+|+....+ +++
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-----------------------------kpi 360 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-----------------------------KPI 360 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----------------------------cch
Confidence 22 359999999999999964332 466
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..+.+|..-|+.+.||||++++++++.|..|++||.++|+... +.+|-..|+.++|+.|.++|++++.|.++++|++++
T Consensus 361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 7899999999999999999999999999999999999999864 666999999999999999999999999999999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
.++...+.+|. ..|.++.|+|||..+++++.|..+++|.
T Consensus 441 kKl~~DLpGh~----------DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHA----------DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCC----------ceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999988 7899999999999999999999999995
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-46 Score=370.40 Aligned_cols=450 Identities=19% Similarity=0.327 Sum_probs=382.4
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEE
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKT 158 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~ 158 (762)
+.|++||.-+.+..++.|.|+|+.+.+-...--.+...|++++.||+| .+|++..+.|...+-++.....++.
T Consensus 20 l~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g-------~lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 20 LVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDG-------TLLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred EEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCc-------eEEEEEcCCCcEEEEecccceeeEE
Confidence 889999999999999999999998877655445677889999999999 6778888888888877766655555
Q ss_pred EEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCc
Q 040987 159 IDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEP 238 (762)
Q Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v 238 (762)
+.. ...|
T Consensus 93 f~f-------------------------------------------------------------------------k~~v 99 (893)
T KOG0291|consen 93 FNF-------------------------------------------------------------------------KRGV 99 (893)
T ss_pred Eee-------------------------------------------------------------------------cCcc
Confidence 432 4567
Q ss_pred eEEEECCCCCEEEEEeCCeEEEEEccCchh---hhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCce
Q 040987 239 QVITISSSGKYFGIRKQRKLLIWKVPDVEA---ERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT 315 (762)
Q Consensus 239 ~~~~~spdg~~la~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~ 315 (762)
.++.|||||+++|++..+.+.||..+.... .+....+...+|...|.++.|+.|.++|++|+.|-.+++|.++..+.
T Consensus 100 ~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~ 179 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN 179 (893)
T ss_pred ceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc
Confidence 889999999999999999999999875443 23344566779999999999999999999999999999999876654
Q ss_pred eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC-----------
Q 040987 316 FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT----------- 384 (762)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~----------- 384 (762)
+. ...+.+|.+.|..+-|..+...+++.+.||.+.+|....
T Consensus 180 ~~----------------------------~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd 231 (893)
T KOG0291|consen 180 LF----------------------------TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD 231 (893)
T ss_pred cc----------------------------eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccc
Confidence 32 367889999999999999999999999999999997661
Q ss_pred ------------Cce------------eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 385 ------------GKK------------KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 385 ------------~~~------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
++. ..+......+++.+|++..+.|+++-..|...+|++....+++.+.-..
T Consensus 232 ~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---- 307 (893)
T KOG0291|consen 232 EEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---- 307 (893)
T ss_pred ccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc----
Confidence 111 1122233678999999999999999999999999999999999987655
Q ss_pred CCCcccCceeeEEEeCCCCEEEEeecC-ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRAEN-YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK 519 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 519 (762)
..|..++|+..|.+||.++.. |++-+|+..+..-+.+. ++| ...+.+++++|||+++|+|+
T Consensus 308 ------~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ----QgH------~~~i~~l~YSpDgq~iaTG~-- 369 (893)
T KOG0291|consen 308 ------QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ----QGH------SDRITSLAYSPDGQLIATGA-- 369 (893)
T ss_pred ------ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec----ccc------ccceeeEEECCCCcEEEecc--
Confidence 688999999999999999866 89999999876544433 233 77899999999999999999
Q ss_pred ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 520 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.|+.|++||..++-+..++ ..| ...|+.+.|+.+|+.+++.+.||+|+.||+......+.+.
T Consensus 370 -------eDgKVKvWn~~SgfC~vTF-----teH-ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft----- 431 (893)
T KOG0291|consen 370 -------EDGKVKVWNTQSGFCFVTF-----TEH-TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT----- 431 (893)
T ss_pred -------CCCcEEEEeccCceEEEEe-----ccC-CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec-----
Confidence 9999999999999887776 568 9999999999999999999999999999998877666552
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-C-CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEE
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-E-TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSV 677 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d-~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~v 677 (762)
........+++..|.|.++..|+ | -.|++|++++|+++-.+.||.+||.+++|+|+|..|+++|.|.+ |++
T Consensus 432 -----~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT--VRi 504 (893)
T KOG0291|consen 432 -----SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT--VRI 504 (893)
T ss_pred -----CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce--EEE
Confidence 11234456888899999999998 5 68999999999999999999999999999999999999999999 999
Q ss_pred EECCCC
Q 040987 678 WNMSKL 683 (762)
Q Consensus 678 wd~~~~ 683 (762)
||+-..
T Consensus 505 W~if~s 510 (893)
T KOG0291|consen 505 WDIFSS 510 (893)
T ss_pred EEeecc
Confidence 999765
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-47 Score=373.02 Aligned_cols=474 Identities=17% Similarity=0.209 Sum_probs=373.5
Q ss_pred EEEeecCCcceeEEEEecCCCeEEEEecCCc-ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeee
Q 040987 33 ILIERKPRSRSFIFAVARSSGLCRTAEYPAV-NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL 110 (762)
Q Consensus 33 ~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~-~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l 110 (762)
...+..+.++..++|+||.||.|++|+..+. ...++.||+..|++ +.|+..|..||+|+ |+.|.+||+-...-+..|
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~-l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTT-LKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEE-EEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 4555556566889999999999999999864 44577999999998 99999999999999 899999999888888999
Q ss_pred cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecc-cccCCcccCCCCCceE
Q 040987 111 EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPS-LLRQPAQSDEKPPKLF 188 (762)
Q Consensus 111 ~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~-~~~~~~~~~~~~~~~~ 188 (762)
.||...|+..-|..+. ++|++.|.|+.|++||+.+..|..+.-.|. .++.+++.. ++-.......-..+-+
T Consensus 146 ~GHkd~iT~~~F~~~~-------~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGD-------SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred ecchHHHhHHhccCCC-------eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 9999999999999977 799999999999999999999999987776 888887733 1111111111111112
Q ss_pred EEEEee-------------e------c---cccCcCCccCC---------------------------------------
Q 040987 189 AYLSVE-------------D------T---RETTKSHKKEP--------------------------------------- 207 (762)
Q Consensus 189 ~~~~~~-------------~------~---~~~~~~~~~~~--------------------------------------- 207 (762)
++-.+. . . .......--|.
T Consensus 219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e 298 (888)
T KOG0306|consen 219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE 298 (888)
T ss_pred ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence 111111 0 0 00000000000
Q ss_pred --------------------------------CCC-------CccccEEEEecCC-ccc-c------ceeeeccCCCceE
Q 040987 208 --------------------------------RPN-------TMNGRICKCNLTE-SRL-A------GGVTLAEMKEPQV 240 (762)
Q Consensus 208 --------------------------------~~g-------~~d~~i~iwd~~~-~~~-~------~~~~~~~~~~v~~ 240 (762)
..+ -.++.+..|.++. +.. . .-...+|...|..
T Consensus 299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs 378 (888)
T KOG0306|consen 299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS 378 (888)
T ss_pred cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence 011 2345555555544 111 0 1234568888999
Q ss_pred EEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccc
Q 040987 241 ITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATND 320 (762)
Q Consensus 241 ~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 320 (762)
+++|.|...++++..+.+.+|+..+.++. +.. ..+.+.+..|-|.++++++|...|.+.+||+.+..
T Consensus 379 l~vS~d~~~~~Sga~~SikiWn~~t~kci-----RTi--~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~------ 445 (888)
T KOG0306|consen 379 LCVSSDSILLASGAGESIKIWNRDTLKCI-----RTI--TCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS------ 445 (888)
T ss_pred EEeecCceeeeecCCCcEEEEEccCccee-----EEe--ccccEEEEEecCCCceEEEeccCCceEEEEeehhh------
Confidence 99999988888888899999999888854 222 23478888899999999999999999999986553
Q ss_pred ccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC-----ce--------
Q 040987 321 NKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG-----KK-------- 387 (762)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~-----~~-------- 387 (762)
.+...+.|.+.|++++.+||++.+++|+.|.+|++||..-- ..
T Consensus 446 ------------------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~ 501 (888)
T KOG0306|consen 446 ------------------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH 501 (888)
T ss_pred ------------------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence 45677799999999999999999999999999999986421 11
Q ss_pred eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 388 KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 388 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.........|.|+.+||||++|+++--|++++||-+++.+..-.+.||. -+|.++.++||++.+++|+.|
T Consensus 502 ~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk----------LPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 502 TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK----------LPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc----------cceeEEeccCCcCeEEeccCC
Confidence 1234456789999999999999999999999999999999999999998 577999999999999999999
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
..|++|-+.-|.+-..+.. |.+.|.++.|-|+...+.+++ .|+.|+-||-+.-..+..+
T Consensus 572 KnVKiWGLdFGDCHKS~fA----------HdDSvm~V~F~P~~~~FFt~g---------KD~kvKqWDg~kFe~iq~L-- 630 (888)
T KOG0306|consen 572 KNVKIWGLDFGDCHKSFFA----------HDDSVMSVQFLPKTHLFFTCG---------KDGKVKQWDGEKFEEIQKL-- 630 (888)
T ss_pred CceEEeccccchhhhhhhc----------ccCceeEEEEcccceeEEEec---------CcceEEeechhhhhhheee--
Confidence 9999999987765544432 378899999999999999998 9999999999988887776
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.+| ...|.+++.+|+|.++++++.|.+|++|....
T Consensus 631 ---~~H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 631 ---DGH-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ---ccc-hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 688 88999999999999999999999999998765
No 11
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.4e-45 Score=366.97 Aligned_cols=523 Identities=43% Similarity=0.700 Sum_probs=418.7
Q ss_pred ecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEE
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYW 148 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vW 148 (762)
.|....+.....||+|++++....++.|.||...||.+++.|.+|..+++.+.+.|... . +.++++++.||+|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~---~-~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSE---N-ANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCc---c-ceEEEEEecCccEEEe
Confidence 56666666679999999999999999999999999999999999999999999999884 2 3488899999999999
Q ss_pred eCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccc
Q 040987 149 DFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAG 228 (762)
Q Consensus 149 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~ 228 (762)
|+..+.+++++..+.++..+.+..... +.. ..+++..++...... ..+...++++-+.+.+-....
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a-----~~s---~~~~~s~~~~~~~~~------~s~~~~~q~~~~~~~t~~~~~ 153 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQA-----DIS---ANVYVSVEDYSILTT------FSKKLSKQSSRFVLATFDSAK 153 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHh-----Ccc---ceeEeecccceeeee------cccccccceeeeEeeeccccc
Confidence 999999999999998888886631111 111 234444333322211 223333444444444433332
Q ss_pred eeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIW 308 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 308 (762)
...........++.+++.|++.+...+..+.+|+..... ...........|...+++.++||+++++|+|..||.|.+|
T Consensus 154 ~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 154 GDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVW 232 (792)
T ss_pred hhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEE
Confidence 222222223788999999999999889999999988755 2122334455688889999999999999999999999999
Q ss_pred eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee
Q 040987 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~ 388 (762)
.--+. .++....+.+++|...|.+++|+++|.+|++|+..+.+.+|.+++++.+
T Consensus 233 ~d~~~--------------------------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq 286 (792)
T KOG1963|consen 233 RDFGS--------------------------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ 286 (792)
T ss_pred ecccc--------------------------ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc
Confidence 85331 1122345789999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC-CCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP-LPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.+++.+++|..+.+|||+.+.+....|+.|.+....+......+.+...+.. ......+-.+.++++|..+.++..+..
T Consensus 287 fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~ 366 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP 366 (792)
T ss_pred cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCC
Confidence 9999999999999999999999999999999999988888877777665421 123334667889999988889999999
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCC-CcceeEEEEEEecCCCeEEEEeeeccccCC-CceeEEEEEEecCCCceeEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGD-DVTVVVTLVALSQDGSLMSTVDIKLAEEGI-GSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~-~~d~~i~iwd~~~~~~~~~~ 545 (762)
|.|.+||+.+.+.+..+..+...+...+ .+...++.++.+-.|.++++.....+.... ++...+++|........+.+
T Consensus 367 g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L 446 (792)
T KOG1963|consen 367 GHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFIL 446 (792)
T ss_pred ceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEE
Confidence 9999999999999999998888776666 567788999999999999999876554432 24678999999999999999
Q ss_pred EEEeecCCCCCceEEEEEcC-CCC-eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEE
Q 040987 546 STIVYEPHRDAGISAVAFHP-NRR-AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~sp-d~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
.+.+..+| ...+...++.+ ... .+++++.||.+++|-+.+.+..... ...|.|+....+|..++++++||.||.+|
T Consensus 447 ~T~I~~PH-~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~-~s~W~c~~i~sy~k~~i~a~~fs~dGsll 524 (792)
T KOG1963|consen 447 NTKINNPH-GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK-SSNWTCKAIGSYHKTPITALCFSQDGSLL 524 (792)
T ss_pred EEEEecCC-CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC-ccceEEeeeeccccCcccchhhcCCCcEE
Confidence 99999999 65555555544 333 7999999999999999766655444 67999999999999999999999999999
Q ss_pred EEEcCCeEEEEeCCC
Q 040987 624 AVAAETVITLWDPDR 638 (762)
Q Consensus 624 a~~~d~~i~iwd~~~ 638 (762)
+++.|++|.+||..+
T Consensus 525 a~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 525 AVSFDDTITIWDYDT 539 (792)
T ss_pred EEecCCEEEEecCCC
Confidence 999999999999988
No 12
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-43 Score=347.43 Aligned_cols=556 Identities=12% Similarity=0.125 Sum_probs=391.9
Q ss_pred ceEEEEeeeeeEEEEEEeecCCcceeEEEEecCCCeEEEEecCCccee-eeecCcccccCCceeecCCCEEEEEe-C--C
Q 040987 19 NKFIISKLKAIKIHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSNDVKRLLVCT-S--N 94 (762)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~dg~~la~~~-~--~ 94 (762)
.+.+++++.+....-...+...+.+-++|.-. -..|.+||...-.+. .+..|...+++ +|||++|+|+|+|. + -
T Consensus 25 ~k~~L~kVlGlTv~~~~gLa~~p~Sgl~aYpA-GCvVVlfn~~~~tQ~hlvnssRk~~t~-vAfS~~GryvatGEcG~~p 102 (1080)
T KOG1408|consen 25 TKLILQKVLGLTVKNANGLASVPCSGLCAYPA-GCVVVLFNVDSCTQSHLVNSSRKPLTC-VAFSQNGRYVATGECGRTP 102 (1080)
T ss_pred hhhhhHhhhceEeecCCcccccccccceeecc-CcEEEEEcccccchhheecccCcceeE-EEEcCCCcEEEecccCCCc
Confidence 34455566565555555555555455555421 156688998865554 44778888997 99999999999998 3 6
Q ss_pred EEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec--CCeEEEEeCCCcceEEEEEeccceEEEeecc
Q 040987 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL--DGTIKYWDFSVPELLKTIDVKFSIFSMVIPS 172 (762)
Q Consensus 95 ~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~--d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~ 172 (762)
.++||+++.-..+..|..|.-.|+|++|+|.+ +|+++.+. |-.|-+|||+..-....-+....|..++|
T Consensus 103 a~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~-------kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~f-- 173 (1080)
T KOG1408|consen 103 ASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGN-------KYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAF-- 173 (1080)
T ss_pred cceeeeeccccchhhhhhccccceeeeecCCC-------cEEEeeccccceEEEhhhhhhcccccccccceeEEEEEE--
Confidence 99999999999999999999999999999999 79988765 56788999986554444333445555555
Q ss_pred cccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccc------------------------
Q 040987 173 LLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAG------------------------ 228 (762)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~------------------------ 228 (762)
+.|+.. .....+..|++|.++.++...
T Consensus 174 ------sEdgSY-----------------------fvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ava 224 (1080)
T KOG1408|consen 174 ------SEDGSY-----------------------FVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVA 224 (1080)
T ss_pred ------ccCCce-----------------------eeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhh
Confidence 222211 011223345555554433110
Q ss_pred -----------------------------eeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhhee-----
Q 040987 229 -----------------------------GVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVM----- 273 (762)
Q Consensus 229 -----------------------------~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~----- 273 (762)
.....-+....|++. ..++|+ ++.+|.|++|+..+-.......
T Consensus 225 Cg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~hal 302 (1080)
T KOG1408|consen 225 CGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHAL 302 (1080)
T ss_pred hcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEEeeccceeeecCcchhhhcccccccccc
Confidence 000001122233443 356777 5589999999987544320000
Q ss_pred ----------eeeee----ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCccc
Q 040987 274 ----------RKITL----HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRD 339 (762)
Q Consensus 274 ----------~~~~~----~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (762)
..... +--....++.|++...+|.....|..++|||++......
T Consensus 303 g~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg---------------------- 360 (1080)
T KOG1408|consen 303 GSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG---------------------- 360 (1080)
T ss_pred ccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccccc----------------------
Confidence 00000 111234577899988899999999999999997654321
Q ss_pred CCccccceeeeccccceeEEEEecC-----------CCEEEEEecCCeEEEEecCCCce--e------------------
Q 040987 340 NDDADLCTTWHWHPSEVSVLIFSSD-----------GAYLYSGGKEGVLVVWQLDTGKK--K------------------ 388 (762)
Q Consensus 340 ~~~~~~~~~~~~h~~~v~~~~~s~~-----------g~~l~s~~~dg~i~~wd~~~~~~--~------------------ 388 (762)
....+-.|...|+.+.--|- ...+++++.|++|++||++.+.. .
T Consensus 361 -----k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~ 435 (1080)
T KOG1408|consen 361 -----KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDS 435 (1080)
T ss_pred -----ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccC
Confidence 12344557777776654331 12488999999999999976221 0
Q ss_pred ------------------ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 389 ------------------FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 389 ------------------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
........+.+++.||+|++|++|..-|+++||++...+....+..|. ..|.
T Consensus 436 ~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe----------sEil 505 (1080)
T KOG1408|consen 436 TQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE----------SEIL 505 (1080)
T ss_pred chhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc----------ceeE
Confidence 000112358899999999999999999999999999888888888777 8899
Q ss_pred eEEEeC---CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC--CeEEEEeeeccccCC
Q 040987 451 DIAFNH---DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG--SLMSTVDIKLAEEGI 525 (762)
Q Consensus 451 ~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--~~l~~~~~~~~~~~~ 525 (762)
++.|+. ..++||+++.|.-|.+||....-. +.. ..++|...|+++.|.-.| ..+++++
T Consensus 506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~---l~q------tld~HSssITsvKFa~~gln~~MiscG-------- 568 (1080)
T KOG1408|consen 506 CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD---LVQ------TLDGHSSSITSVKFACNGLNRKMISCG-------- 568 (1080)
T ss_pred EEeecCchhhhHhhhhccCCceEEEEecccccc---hhh------hhcccccceeEEEEeecCCceEEEecc--------
Confidence 999986 357899999999999999865422 111 123348889999998877 6777776
Q ss_pred CceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
.|..|.+--.+.......+......-. ...+..++..|..+++++++.|..|+|||+.+++..+.++ ...
T Consensus 569 -ADksimFr~~qk~~~g~~f~r~t~t~~-ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK--------gs~ 638 (1080)
T KOG1408|consen 569 -ADKSIMFRVNQKASSGRLFPRHTQTLS-KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK--------GSR 638 (1080)
T ss_pred -CchhhheehhccccCceeccccccccc-cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec--------ccc
Confidence 555554432221111111111000011 4578899999999999999999999999999999988874 223
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.|.+....+...|.|.|||+.. |.++.++|..+|++++.+.||...|+.+.|++|.+.|++++.||. |+||.+..
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC--IFvW~lp~ 714 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC--IFVWKLPL 714 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce--EEEEECch
Confidence 5677888999999999999986 999999999999999999999999999999999999999999998 99999875
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.9e-44 Score=330.42 Aligned_cols=282 Identities=22% Similarity=0.343 Sum_probs=258.7
Q ss_pred ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCC-CCcccceeeeEEeeecCCeEE
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPA-STPATKILSYCWTASLDGTIK 146 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~~l~~~l~s~s~d~~i~ 146 (762)
.|.+.+|.. +.||+|++.||+|+ +|.++||+..+...+.+|.||...|.++.|+|. .. ..+|||+.||+++
T Consensus 172 ~gd~rPis~-~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~------~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 172 VGDTRPISG-CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD------LNLATASADGTVK 244 (459)
T ss_pred ccCCCccee-eEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc------cceeeeccCCcee
Confidence 556778886 99999999999999 999999999999999999999999999999998 33 6899999999999
Q ss_pred EEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccc
Q 040987 147 YWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRL 226 (762)
Q Consensus 147 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~ 226 (762)
+|++++...+..++
T Consensus 245 lw~~~~e~~l~~l~------------------------------------------------------------------ 258 (459)
T KOG0272|consen 245 LWKLSQETPLQDLE------------------------------------------------------------------ 258 (459)
T ss_pred eeccCCCcchhhhh------------------------------------------------------------------
Confidence 99998766655444
Q ss_pred cceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 227 AGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
+|...|..++|+|+|++|+ ++.|.+-++||+.++... ....+|...|.+++|.|||..+++|+.|..-
T Consensus 259 ------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El-----L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 259 ------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL-----LLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred ------cchhhheeeeecCCCceeeecccccchhhcccccchhh-----HhhcccccccceeEecCCCceeeccCccchh
Confidence 4566788899999999999 558999999999999876 6678999999999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
+|||+++++ ++-.+.+|...|.++.|+|+|..|++|+.|++++|||++..
T Consensus 328 RvWDlRtgr------------------------------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 328 RVWDLRTGR------------------------------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred heeecccCc------------------------------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 999998885 45688999999999999999999999999999999999988
Q ss_pred cee-ccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE
Q 040987 386 KKK-FLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL 463 (762)
Q Consensus 386 ~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 463 (762)
... ..+.|.+-|..+.|+| .|.+|++++.|++++||...+..+++.+.||. +.|.++.+++|+.++++
T Consensus 378 ~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe----------~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 378 SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE----------GKVISLDISPDSQAIAT 447 (459)
T ss_pred ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc----------cceEEEEeccCCceEEE
Confidence 775 4788999999999998 78899999999999999999999999999998 89999999999999999
Q ss_pred eecCceEEEEE
Q 040987 464 RAENYCIHFYS 474 (762)
Q Consensus 464 ~~~dg~i~i~d 474 (762)
++.|.++++|.
T Consensus 448 ~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 SSFDRTIKLWR 458 (459)
T ss_pred eccCceeeecc
Confidence 99999999995
No 14
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=8.4e-39 Score=320.29 Aligned_cols=518 Identities=13% Similarity=0.152 Sum_probs=397.0
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc-eE----EeeecCCccceeEEEEeCCC
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQ----ISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~-~~----~~~l~~h~~~V~~v~~s~~~ 126 (762)
..|.+|-..........+|...|.. .-+=|.+|.++. ++.+.||+..++ +. +..++...+.|+++ ++|+-
T Consensus 95 ~~i~~~~rgk~i~~~~~~~~a~v~~---l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~T 170 (910)
T KOG1539|consen 95 NKIYAYARGKHIRHTTLLHGAKVHL---LLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPST 170 (910)
T ss_pred cEEEEEEccceEEEEeccccceEEE---EeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchh
Confidence 5666676666677778888888876 566678888888 799999999874 22 12223323337777 57765
Q ss_pred CcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCcc
Q 040987 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKK 205 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
++. -++.|+.+|.+++|++++++.+++++... .|+++.- .+ .+-.+
T Consensus 171 -YLN----KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieq-----sP---------aLDVV-------------- 217 (910)
T KOG1539|consen 171 -YLN----KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQ-----SP---------ALDVV-------------- 217 (910)
T ss_pred -hee----eEEEeecCCcEEEEEeccCcEEEEecccccceeEecc-----CC---------cceEE--------------
Confidence 233 34489999999999999999999998876 6666621 00 01111
Q ss_pred CCCCCCccccEEEEecCCccccceeeecc-CCCceEEEECCCCCEEE-EE-eCCeEEEEEccCchhhhheeeeeeeccCc
Q 040987 206 EPRPNTMNGRICKCNLTESRLAGGVTLAE-MKEPQVITISSSGKYFG-IR-KQRKLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 206 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la-~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
+.|..+|+|.++|++.++.+ ....| .+.|+.++|.-||+.+. ++ ..|.+.+||++..+.. ......|.+
T Consensus 218 --aiG~~~G~ViifNlK~dkil--~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~----~v~~nah~~ 289 (910)
T KOG1539|consen 218 --AIGLENGTVIIFNLKFDKIL--MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI----NVTRNAHYG 289 (910)
T ss_pred --EEeccCceEEEEEcccCcEE--EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee----eeeeccccC
Confidence 67899999999999999999 33334 69999999999999774 44 5699999999988743 344458889
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.|....|.|....+++++.|+.+++|=.+++.. .+..++.-.||..+..+++|.
T Consensus 290 sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg--------------------------~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 290 SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG--------------------------VPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred CcccceecCCCceEeeccCCCceeEEEeeCCCC--------------------------cchheeeccCCCCCchheeee
Confidence 999999999999999999999999997654421 124456677899999999997
Q ss_pred -cCCCEEEEEecCCeEEEEecCCCce---------------eccC----CCCCCeEEEEeCCC-----CCeEEEEecCCc
Q 040987 363 -SDGAYLYSGGKEGVLVVWQLDTGKK---------------KFLP----RIGSPLLYFTESPD-----PSLSSISCADNQ 417 (762)
Q Consensus 363 -~~g~~l~s~~~dg~i~~wd~~~~~~---------------~~~~----~~~~~v~~~~~s~~-----~~~l~~~~~d~~ 417 (762)
.+|..+.+++.|++++.+++..... .... ..-.+|..+++... .+.+.+.-.+..
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 6889999999999998887643211 0011 01135666666432 244555556778
Q ss_pred EEEEEcCCceE-EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 418 VHLLKMPSMEI-IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 418 i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.+.|+.++... ...+..... ......+.+++.++.|++.+.|+..|.|-+|++++|-....+.. ...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~-----~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-------~~a 491 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRF-----KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-------SPA 491 (910)
T ss_pred EEEEeccCcccccEEecCccc-----cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-------Ccc
Confidence 99999987544 223322110 00226789999999999999999999999999999866555531 122
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
|..+|+.++...-++.+++++ .+|.+++||.........+.. ...+.++..+.....++.+..|
T Consensus 492 h~~~V~gla~D~~n~~~vsa~---------~~Gilkfw~f~~k~l~~~l~l-------~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAG---------ADGILKFWDFKKKVLKKSLRL-------GSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred ccCceeEEEecCCCceEEEcc---------CcceEEEEecCCcceeeeecc-------CCCcceeeeeehhhhhhhhcCc
Confidence 378899999999999999998 899999999998876555532 4478889999988999999999
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEE
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNM 655 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~ 655 (762)
-.|+++|..+.+..+.+. +|...|++++|||||++|++++ |++|++||+.++.++-.+. -..+..++
T Consensus 556 f~I~vvD~~t~kvvR~f~-----------gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sl 623 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFW-----------GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSL 623 (910)
T ss_pred eeEEEEEchhhhhhHHhh-----------ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceee
Confidence 999999999988887763 7999999999999999999999 9999999999999998875 56789999
Q ss_pred EEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 656 SFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 656 ~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.|||+|.+||++..|.. -|++|-=.+
T Consensus 624 s~SPngD~LAT~Hvd~~-gIylWsNks 649 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQN-GIYLWSNKS 649 (910)
T ss_pred EECCCCCEEEEEEecCc-eEEEEEchh
Confidence 99999999999999853 399996443
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-42 Score=320.87 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=259.6
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCc
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~ 426 (762)
-+.+.+|..+.|+.|++.|++|+.+|.+++|+..+... ..+.+|...+.++.|+|. +..+++++.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 34677899999999999999999999999999998866 468899999999999997 678999999999999999999
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
.++..+.+|. ..|..++|+|+|++|++++.|.+-++||+.++..+.. .++| ...|.+++|
T Consensus 252 ~~l~~l~gH~----------~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~----QEGH------s~~v~~iaf 311 (459)
T KOG0272|consen 252 TPLQDLEGHL----------ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL----QEGH------SKGVFSIAF 311 (459)
T ss_pred cchhhhhcch----------hhheeeeecCCCceeeecccccchhhcccccchhhHh----hccc------ccccceeEe
Confidence 9999999988 7889999999999999999999999999999865543 2333 788999999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.|||.++++|+ .|..-+|||+++++++..+ .+| ...|.+|+|+|+|..||+|+.|++++|||++.
T Consensus 312 ~~DGSL~~tGG---------lD~~~RvWDlRtgr~im~L-----~gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 312 QPDGSLAATGG---------LDSLGRVWDLRTGRCIMFL-----AGH-IKEILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred cCCCceeeccC---------ccchhheeecccCcEEEEe-----ccc-ccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 99999999999 8899999999999988776 689 99999999999999999999999999999998
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l 664 (762)
......+ .+|..-|+.+.|+| .|.+|++++ |++++||...+..+++++.||.+.|.++..++|+.++
T Consensus 377 r~~ly~i-----------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 377 RSELYTI-----------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred cccceec-----------ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceE
Confidence 7776655 48999999999999 788999999 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEE
Q 040987 665 VATSWGSKPQLSVWN 679 (762)
Q Consensus 665 ~s~~~d~~~~v~vwd 679 (762)
++++.|.+ +++|.
T Consensus 446 ~t~s~DRT--~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRT--IKLWR 458 (459)
T ss_pred EEeccCce--eeecc
Confidence 99999998 99995
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-40 Score=290.10 Aligned_cols=292 Identities=12% Similarity=0.176 Sum_probs=263.4
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
.+++++||.+.|.+ +.|++|.++|++++ ||.+.|||.-|....+-+.-....|..++|+|.| .++|.|+-|
T Consensus 47 ~rr~LkGH~~Ki~~-~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-------~~VAcGGLd 118 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYA-MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-------NFVACGGLD 118 (343)
T ss_pred eEEEecccccceee-eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-------CeEEecCcC
Confidence 44789999999997 99999999999999 8999999999998888888889999999999999 799999999
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
+...||++.+.+.... +
T Consensus 119 N~Csiy~ls~~d~~g~---------------------------------------------------------~------ 135 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGN---------------------------------------------------------V------ 135 (343)
T ss_pred ceeEEEeccccccccc---------------------------------------------------------c------
Confidence 9999999885421100 0
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeec
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDV 301 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~ 301 (762)
.+...+.+|.+.+.|..|.+|+++|.++.|.+..+||+++++.. ..+.+|.+.|.+++++| +++.+++|+-
T Consensus 136 ---~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~-----~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 136 ---RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQT-----QVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ---eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEE-----EEecCCcccEEEEecCCCCCCeEEeccc
Confidence 00145678999999999999999998999999999999999876 77889999999999999 9999999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
|+..++||++.+ .+++.|.+|...|++++|.|+|.-+++|++|++.++||
T Consensus 208 D~~aklWD~R~~------------------------------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 208 DKSAKLWDVRSG------------------------------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred ccceeeeeccCc------------------------------ceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 999999999776 45689999999999999999999999999999999999
Q ss_pred cCCCceeccCCCC---CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 382 LDTGKKKFLPRIG---SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 382 ~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
++..+.+....+. .+|++++||..|++|++|..|.++.+||.-.++....+.+|. +.|.++..+|||
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe----------NRvScl~~s~DG 327 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE----------NRVSCLGVSPDG 327 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC----------CeeEEEEECCCC
Confidence 9998886554443 489999999999999999999999999999999999999988 899999999999
Q ss_pred CEEEEeecCceEEEEE
Q 040987 459 GLVALRAENYCIHFYS 474 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d 474 (762)
.-+++|+.|.+++||.
T Consensus 328 ~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 328 MAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEecchhHheeecC
Confidence 9999999999999994
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.6e-40 Score=288.23 Aligned_cols=287 Identities=19% Similarity=0.282 Sum_probs=257.2
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
.+++++|...|.++.|++|.++|++++.||.+.+||.-+...... +-....|..++|+|.|+++++|+.|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 478999999999999999999999999999999999988776554 4445689999999999999999999999999998
Q ss_pred Cc------eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 425 SM------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 425 ~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
+. ...+.+.+|. +.+.++.|.+|+ .|++++.|.+..+||+++++.+..+. +| .
T Consensus 128 ~~d~~g~~~v~r~l~gHt----------gylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~----GH------~ 186 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHT----------GYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH----GH------T 186 (343)
T ss_pred cccccccceeeeeecCcc----------ceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec----CC------c
Confidence 64 4556678877 899999999864 68999999999999999998776654 33 7
Q ss_pred eeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 499 VVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 499 ~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
+.|.++.++| +++.+++++ -|...++||++.+...+.+ .+| ...|+++.|.|+|.-+++|++|+
T Consensus 187 gDV~slsl~p~~~ntFvSg~---------cD~~aklWD~R~~~c~qtF-----~gh-esDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGG---------CDKSAKLWDVRSGQCVQTF-----EGH-ESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred ccEEEEecCCCCCCeEEecc---------cccceeeeeccCcceeEee-----ccc-ccccceEEEccCCCeeeecCCCc
Confidence 8899999999 999999999 8899999999999887766 789 99999999999999999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMS 656 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 656 (762)
+.++||++....+..+. ......+|++++||..|++|.+|. |.++.+||.-.++.+..|.+|.++|.++.
T Consensus 252 tcRlyDlRaD~~~a~ys---------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~ 322 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYS---------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG 322 (343)
T ss_pred eeEEEeecCCcEEeeec---------cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence 99999999988776663 122357899999999999999987 99999999999999999999999999999
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEE
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.+|||.-|+++|.|.. ++||.
T Consensus 323 ~s~DG~av~TgSWDs~--lriW~ 343 (343)
T KOG0286|consen 323 VSPDGMAVATGSWDST--LRIWA 343 (343)
T ss_pred ECCCCcEEEecchhHh--eeecC
Confidence 9999999999999998 99994
No 18
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.9e-37 Score=292.84 Aligned_cols=517 Identities=14% Similarity=0.160 Sum_probs=396.0
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CC--------EEEEEEcccceEEeeecCCccceeEEEEe
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SN--------TVSIFSTSTGLQISSLEGHKAPVTTVIVV 123 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~--------~i~iwd~~~~~~~~~l~~h~~~V~~v~~s 123 (762)
+...+++.++..++...||...|.| ++.+||.-++|+|. .| .++|||..+-..++.+......|+|++||
T Consensus 85 ~V~Vl~n~ee~~Qr~y~GH~ddikc-~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFs 163 (626)
T KOG2106|consen 85 AVGVLYNWEERSQRHYLGHNDDIKC-MAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFS 163 (626)
T ss_pred cEEEEEeehhhhcccccCCCCceEE-EeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeec
Confidence 5667899999888899999999998 99999999999887 34 69999998888889888888899999999
Q ss_pred CCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcC
Q 040987 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKS 202 (762)
Q Consensus 124 ~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (762)
+-.. +.++ ..+--+.+..+.|||+..+......+... .+....| .| .+.+ .
T Consensus 164 k~~~--G~~l-~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~F-----HP---td~n------------l----- 215 (626)
T KOG2106|consen 164 KING--GSLL-CAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATF-----HP---TDPN------------L----- 215 (626)
T ss_pred ccCC--CceE-EEecCCCccccchhhchhhhccCcceeccceEEEEEe-----cc---CCCc------------E-----
Confidence 8542 1222 23334667789999999988777666555 3334433 11 1111 1
Q ss_pred CccCCCCCCccccEEEEecCCcccccee---eeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec
Q 040987 203 HKKEPRPNTMNGRICKCNLTESRLAGGV---TLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH 279 (762)
Q Consensus 203 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 279 (762)
+..+..+.+.+|+++.+...+.. .....+.|.|++|.++|..+.+.++|.|.||+..+... .++.. .
T Consensus 216 -----iit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~----~k~~~-a 285 (626)
T KOG2106|consen 216 -----IITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI----SKQVH-A 285 (626)
T ss_pred -----EEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE----EeEee-e
Confidence 23457789999999988777322 12244689999999999999999999999999977653 33344 9
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
|.+.|.+++...+|.+ ++|+.|..|..||- .-+... ...+....+.|..+
T Consensus 286 H~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~-~y~k~r----------------------------~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 286 HDGGVFSLCMLRDGTL-LSGGKDRKIILWDD-NYRKLR----------------------------ETELPEQFGPIRTV 335 (626)
T ss_pred cCCceEEEEEecCccE-eecCccceEEeccc-cccccc----------------------------cccCchhcCCeeEE
Confidence 9999999999999975 45999999999993 221111 12233344566666
Q ss_pred EEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+=.. .-|+.|...+.|..=.++++-......|......++.+|+..++++++.|+.+++|+ ..++..+..-.
T Consensus 336 ~e~~--~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---- 407 (626)
T KOG2106|consen 336 AEGK--GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---- 407 (626)
T ss_pred ecCC--CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec----
Confidence 5332 227777777778777888888788888999999999999999999999999999999 33444332211
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK 519 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 519 (762)
.++.++.|+|.| .+|.|+..|...+.|.++...+..- .. ..++.+++|+|+|.+||.++
T Consensus 408 -------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~d----------~~~ls~v~ysp~G~~lAvgs-- 466 (626)
T KOG2106|consen 408 -------DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-TD----------NEQLSVVRYSPDGAFLAVGS-- 466 (626)
T ss_pred -------CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-ec----------CCceEEEEEcCCCCEEEEec--
Confidence 577899999999 9999999999999999985444332 22 46799999999999999999
Q ss_pred ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 520 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.|+.|++|.+......+.... .-+ ...|+.+.||+|++++.+-+-|-.|..|.....+.....++..|.
T Consensus 467 -------~d~~iyiy~Vs~~g~~y~r~~---k~~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~ 535 (626)
T KOG2106|consen 467 -------HDNHIYIYRVSANGRKYSRVG---KCS-GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWA 535 (626)
T ss_pred -------CCCeEEEEEECCCCcEEEEee---eec-CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeee
Confidence 899999999988776555432 234 579999999999999999999999999965555555444444554
Q ss_pred eee-------ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC---eEEEEeccccCceeEEEEeCCCCEEEEEE
Q 040987 600 CHA-------VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN---VLVAVIGETLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 600 ~~~-------~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~---~~~~~l~~~~~~v~~~~~s~dg~~l~s~~ 668 (762)
... .+..+...|..++-+.+.+++|+|. .|.|++|...-- .....+.+|.+.|.+++|.-+...|++.+
T Consensus 536 t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg 615 (626)
T KOG2106|consen 536 TYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG 615 (626)
T ss_pred eeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence 321 2345667788888889999999998 799999986533 23446678999999999999999999988
Q ss_pred cCCCCeEEEEEC
Q 040987 669 WGSKPQLSVWNM 680 (762)
Q Consensus 669 ~d~~~~v~vwd~ 680 (762)
.|.. |..|++
T Consensus 616 ~D~S--i~qW~l 625 (626)
T KOG2106|consen 616 KDTS--IMQWRL 625 (626)
T ss_pred CCce--EEEEEe
Confidence 9988 999986
No 19
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-38 Score=312.26 Aligned_cols=527 Identities=16% Similarity=0.199 Sum_probs=367.5
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
++.+...+.| +..+|+|....|.+||..+...+.++.||.++|+|+.|.|+. .+..+++||+.|++|++|.++..
T Consensus 15 R~~~v~sw~~-~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s----~~~a~~vsG~sD~~v~lW~l~~~ 89 (764)
T KOG1063|consen 15 RVPKVSSWGP-GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTS----EIVAEMVSGDSDGRVILWKLRDE 89 (764)
T ss_pred cccccccccc-cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccc----cccceEEEccCCCcEEEEEEeeh
Confidence 4554466755 448899999999999999888889999999999999999998 34458999999999999999854
Q ss_pred c--eEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc--ccc
Q 040987 154 E--LLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR--LAG 228 (762)
Q Consensus 154 ~--~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~--~~~ 228 (762)
. ++.++.+|. ++.++. +..... .+.+.|+.+.+||.+..+ +..
T Consensus 90 ~~~~i~~~~g~~~~~~cv~-------------------a~~~~~-------------~~~~ad~~v~vw~~~~~e~~~~~ 137 (764)
T KOG1063|consen 90 YLIKIYTIQGHCKECVCVV-------------------ARSSVM-------------TCKAADGTVSVWDKQQDEVFLLA 137 (764)
T ss_pred heEEEEeecCcceeEEEEE-------------------eeeeEE-------------EeeccCceEEEeecCCCceeeeh
Confidence 4 344555543 444431 111100 112589999999995555 221
Q ss_pred eeeecc-CCCceEEEECCCC-CEEE-EE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc---EEEEeec
Q 040987 229 GVTLAE-MKEPQVITISSSG-KYFG-IR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR---IVAAGDV 301 (762)
Q Consensus 229 ~~~~~~-~~~v~~~~~spdg-~~la-~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~l~~~~~ 301 (762)
...... .--..|+++.|+. .+|. .+ .+..|.++.-...++ .....+.+|.+.|.+++|...+. +||+++.
T Consensus 138 ~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f---~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ 214 (764)
T KOG1063|consen 138 VLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF---ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ 214 (764)
T ss_pred heehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce---eEEEEeeccchhhhhhhhhccCCCcEEEEecCC
Confidence 111111 1234677777844 4443 33 566677776654443 44467789999999999987544 8999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCcc----ccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDA----DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
|..|+||.+.-+...............+. .+.......- ..-..+.||.+.|+++.|+|.+..|++++.|.++
T Consensus 215 D~yIRiW~i~~~~~~~~~~~e~~~t~~~~---~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksm 291 (764)
T KOG1063|consen 215 DRYIRIWRIVLGDDEDSNEREDSLTTLSN---LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSM 291 (764)
T ss_pred ceEEEEEEEEecCCccccccccccccccC---CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcce
Confidence 99999999754431110000000000000 0000000000 0113456999999999999999999999999999
Q ss_pred EEEecCCCc--e---eccCCC---CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc---eEEEEEccCCCCCCCCCccc
Q 040987 378 VVWQLDTGK--K---KFLPRI---GSPLLYFTESPDPSLSSISCADNQVHLLKMPSM---EIIRSISGIKLPCPLPEEYK 446 (762)
Q Consensus 378 ~~wd~~~~~--~---~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~ 446 (762)
.+|..++.. . ..+-.. ........|+|+++.+++-+..|..++|..... .....+.||.
T Consensus 292 iiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~---------- 361 (764)
T KOG1063|consen 292 IIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV---------- 361 (764)
T ss_pred EEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc----------
Confidence 999876552 2 122222 235788999999999999999999999984332 2333456666
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce-eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI-SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
+.|.+++|+|.|++|++.+.|.+-|+|-.-..+.. .++. -++. |...++|++|-+....++++.
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia-RPQi------HGyDl~c~~~vn~~~~FVSgA-------- 426 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA-RPQI------HGYDLTCLSFVNEDLQFVSGA-------- 426 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeecccccccceeeec-cccc------ccccceeeehccCCceeeecc--------
Confidence 88999999999999999999999999876522221 1111 1122 267789999988655666665
Q ss_pred CceeEEEEEEecCC--------------------------------Ccee------------EEE---------------
Q 040987 526 GSLVCLKFWVSGTQ--------------------------------NKEF------------TLS--------------- 546 (762)
Q Consensus 526 ~~d~~i~iwd~~~~--------------------------------~~~~------------~~~--------------- 546 (762)
++..+|+|+.... +... ..+
T Consensus 427 -dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 427 -DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred -cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 5566667654310 0000 000
Q ss_pred ------------EEeecCCCCCceEEEEEcCCCCeEEEEeCCC-----cEEEEEcccccccccccCCceeeeeecccCCC
Q 040987 547 ------------TIVYEPHRDAGISAVAFHPNRRAAVSSSYGG-----DFKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 547 ------------~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
...+.|| ...|.+++.+|+++++|+++... .|++|+..+......+ .+|.-
T Consensus 506 EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-----------~~HsL 573 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGH-GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-----------EGHSL 573 (764)
T ss_pred HHHHHHhccchhhHHhccC-ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee-----------cccce
Confidence 0012588 88999999999999999987543 5999999877666544 47999
Q ss_pred CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe----EEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 610 AMTAAAFSADGSVLAVAA-ETVITLWDPDRNV----LVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 610 ~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~----~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.|+.++|||||++|++.+ |.++.+|...... ....++.|+.-|++..|+||+++++|+|.|.+ |++|.....
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~--VkVW~~~~~ 650 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK--VKVWEEPDL 650 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce--EEEEeccCc
Confidence 999999999999999999 9999999886542 23346789999999999999999999999999 999999887
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-39 Score=278.25 Aligned_cols=297 Identities=18% Similarity=0.232 Sum_probs=251.9
Q ss_pred CCcceeEEEEecCCCeEEEEecCCcceeeeecCc-ccccCCceeecCCCEEEEEeCCEEEEEEcccce--EEeeecCCcc
Q 040987 39 PRSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGR-SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL--QISSLEGHKA 115 (762)
Q Consensus 39 ~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~-~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~--~~~~l~~h~~ 115 (762)
+.+.+.+||+++-|.+||+|...++.-.....|. ..|.. +.+.||+++||+++.-.|++||+.+++ ++.++.+|..
T Consensus 6 ~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNr-LeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 6 PTDDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNR-LEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred CCCCceEEEeccCcceeeeeehhcCeEEEEEecCccceee-EEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC
Confidence 4446889999999999999999998887766665 55775 999999999999999999999999875 6899999999
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeee
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVED 195 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (762)
.|+++.|..+| ++++|||+||++||||++...+.+.++...+|.++... .+..
T Consensus 85 NVtaVgF~~dg-------rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlh----------pnQt---------- 137 (311)
T KOG0315|consen 85 NVTAVGFQCDG-------RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLH----------PNQT---------- 137 (311)
T ss_pred ceEEEEEeecC-------eEEEecCCCceEEEEeccCcccchhccCCCCcceEEec----------CCcc----------
Confidence 99999999999 89999999999999999998888888888888888541 1100
Q ss_pred ccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhh-hhee
Q 040987 196 TRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAE-RVVM 273 (762)
Q Consensus 196 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~-~~~~ 273 (762)
.+++|..+|.|++||+.+..+.+.........+.++...|||.+|++. ..|..++|++.+.... ...+
T Consensus 138 ----------eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 138 ----------ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred ----------eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE
Confidence 016788999999999999988877777778899999999999999866 6899999999875432 1233
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
...+..|.+.+..+.+|||+++||+++.|.+++||+.++. + +....+.+|.
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~---------------------------kle~~l~gh~ 258 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--F---------------------------KLELVLTGHQ 258 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--e---------------------------eeEEEeecCC
Confidence 3456789999999999999999999999999999998765 2 2336889999
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEe
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTE 402 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~ 402 (762)
..++.++||.||++|++++.|+.+++|++..++.+ ...+|.....|++.
T Consensus 259 rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999999999999999999999999875 45556555556554
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.2e-39 Score=276.22 Aligned_cols=286 Identities=18% Similarity=0.244 Sum_probs=249.7
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCC-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce--EEEEEccCCCCCCCC
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRI-GSPLLYFTESPDPSLSSISCADNQVHLLKMPSME--IIRSISGIKLPCPLP 442 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~ 442 (762)
-+|++++.|.+|++|...+|.+.....| ++.|..+.+.||++.|+++ ....|++||++++. ++.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~h~------ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVATFEGHT------ 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeEEeccC------
Confidence 4789999999999999999999765544 5689999999999999988 45689999999854 688898887
Q ss_pred CcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
+.|.++.|..||+++++|++||+++|||++.....+.+.. ..+|+++..+|+...|++++
T Consensus 84 ----kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-----------~spVn~vvlhpnQteLis~d----- 143 (311)
T KOG0315|consen 84 ----KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-----------NSPVNTVVLHPNQTELISGD----- 143 (311)
T ss_pred ----CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-----------CCCcceEEecCCcceEEeec-----
Confidence 7899999999999999999999999999998544443332 67799999999999999998
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
.+|.|++||+........+. ... ...|.+++..|||.+++.+...|..++|++-+......+ .+..
T Consensus 144 ----qsg~irvWDl~~~~c~~~li----Pe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l-----~P~~ 209 (311)
T KOG0315|consen 144 ----QSGNIRVWDLGENSCTHELI----PED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL-----EPVH 209 (311)
T ss_pred ----CCCcEEEEEccCCccccccC----CCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc-----eEhh
Confidence 88999999999887665553 222 678999999999999999999999999999885554444 2555
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC-eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
.++.|.+.+..+.+|||+++||+++ |.+++||+.++. +.-..+++|...+++.+||.||+||++++.|+. +++|++
T Consensus 210 k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~--~rlW~~ 287 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT--ARLWDL 287 (311)
T ss_pred heecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc--eeeccc
Confidence 5778999999999999999999998 999999999988 777788999999999999999999999999998 999999
Q ss_pred CCCceeeEEEEeec
Q 040987 681 SKLSISWSYLLHVE 694 (762)
Q Consensus 681 ~~~~~~~~~~~~~~ 694 (762)
.+++.+..+.+|..
T Consensus 288 ~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 288 SAGKEVRQYQGHHK 301 (311)
T ss_pred ccCceeeecCCccc
Confidence 99999999998875
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-37 Score=300.41 Aligned_cols=469 Identities=14% Similarity=0.175 Sum_probs=355.4
Q ss_pred eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeE
Q 040987 67 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTI 145 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i 145 (762)
.+..|..+|.+ +.|.|..-++.++- +|.|.|||.+|...++.++-..-+|.+..|-+.. .++++|+.|..|
T Consensus 8 k~~~rSdRVKs-Vd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-------nWiv~GsDD~~I 79 (794)
T KOG0276|consen 8 KFQSRSDRVKS-VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-------NWIVTGSDDMQI 79 (794)
T ss_pred HhhccCCceee-eecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-------ceEEEecCCceE
Confidence 34558999998 99999999998888 8999999999999999999999999999999998 799999999999
Q ss_pred EEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 146 KYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
+|++..+++.++.|+.|. -+.+++..+ ..|. + .+++.|-.|++||.+.+
T Consensus 80 rVfnynt~ekV~~FeAH~DyIR~iavHP----------t~P~----v----------------LtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 80 RVFNYNTGEKVKTFEAHSDYIRSIAVHP----------TLPY----V----------------LTSSDDMTIKLWDWENE 129 (794)
T ss_pred EEEecccceeeEEeeccccceeeeeecC----------CCCe----E----------------EecCCccEEEEeeccCc
Confidence 999999999999999998 666665411 1110 0 67889999999999999
Q ss_pred cccceeeeccCCCceEEEECCC-CCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC--CcEEEEee
Q 040987 225 RLAGGVTLAEMKEPQVITISSS-GKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT--QRIVAAGD 300 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~spd-g~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~ 300 (762)
-...+...+|...|.+++|.|. .+.+| ++-|++|+||.+....+. ..+.+|..+|+|+.|-+- ..+|++|+
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-----fTl~gHekGVN~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-----FTLEGHEKGVNCVDYYTGGDKPYLISGA 204 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc-----eeeeccccCcceEEeccCCCcceEEecC
Confidence 8887999999999999999994 56677 457999999999988765 677799999999999884 46999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
.|.+|+|||..+. .+++++.||...|..+.|+|.-..+++|+.||++++|
T Consensus 205 DD~tiKvWDyQtk------------------------------~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 205 DDLTIKVWDYQTK------------------------------SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred CCceEEEeecchH------------------------------HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 9999999999776 5778999999999999999999999999999999999
Q ss_pred ecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 381 QLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 381 d~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
+..+-+... +.-..+++.|++-.+.+..+++|..+|.+.+ .+...++. +..++.|+
T Consensus 255 hs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~----------------------vsMd~~gK 311 (794)
T KOG0276|consen 255 NSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPA----------------------VSMDSNGK 311 (794)
T ss_pred cCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCc----------------------eeecCCcc
Confidence 998877654 3444568999999998889999877766544 33323222 33334443
Q ss_pred EEEEeecC-ceEEEE------EcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEE
Q 040987 460 LVALRAEN-YCIHFY------SLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 460 ~l~~~~~d-g~i~i~------d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
.+-+...+ ..+.+- ++..++.+..-...... ..-....++-+|+|++++++ +||.-.
T Consensus 312 Iiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs------~eiyPq~L~hsPNGrfV~Vc----------gdGEyi 375 (794)
T KOG0276|consen 312 IIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGS------VEIYPQTLAHSPNGRFVVVC----------GDGEYI 375 (794)
T ss_pred EEEEcCceeeeeeceeccCcccccCCccccchhhhccc------cccchHHhccCCCCcEEEEe----------cCccEE
Confidence 33322211 011111 22333222111111110 02234567889999999998 678888
Q ss_pred EEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeE
Q 040987 533 FWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT 612 (762)
Q Consensus 533 iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 612 (762)
||..-..+.. . .+.-....|++|.+..+.-..++.|+++ ++.+....+. ...+
T Consensus 376 IyTala~RnK----------~-fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~-------------~~~~- 428 (794)
T KOG0276|consen 376 IYTALALRNK----------A-FGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR-------------PDMS- 428 (794)
T ss_pred EEEeeehhhc----------c-cccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc-------------cccc-
Confidence 8874332211 1 4456678999998888888888899998 5555544431 1111
Q ss_pred EEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 613 AAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 613 ~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
...--.|.+|.+.+++.+++||.+++++++.+... ...+.|+.+|.+++.++.|. .++....
T Consensus 429 -~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S---fyil~~n 490 (794)
T KOG0276|consen 429 -AEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS---FYILKFN 490 (794)
T ss_pred -eeeecCCceEEEEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc---eeEEEec
Confidence 22223566788888999999999999999998644 35688999999999999887 5555443
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=304.79 Aligned_cols=534 Identities=11% Similarity=0.130 Sum_probs=402.8
Q ss_pred EEeccccccccccceEEEEeeeeeEEEEEEeecCCcc-----eeEEEEecCCCeEEEEecCCc-----ceeeeecCccc-
Q 040987 6 VVPFRASSHQSIQNKFIISKLKAIKIHILIERKPRSR-----SFIFAVARSSGLCRTAEYPAV-----NSKMIRGGRSY- 74 (762)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~g~i~~~~~~~~-----~~~~~~~h~~~- 74 (762)
++..+-+.--..+++++.-.......+....+..... +..+.++..++.+.+|+..+. .+.++...++.
T Consensus 82 las~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~ 161 (910)
T KOG1539|consen 82 LASDKDYVYVASGNKIYAYARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF 161 (910)
T ss_pred EEecCceEEEecCcEEEEEEccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCc
Confidence 4445555555666777766666555555555553321 334555667899999998873 12233333333
Q ss_pred ccCCceeecCC--CEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCC
Q 040987 75 VSSPPAFSNDV--KRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFS 151 (762)
Q Consensus 75 v~~~~~~s~dg--~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~ 151 (762)
|+ --+.|+- +.++.|+ +|.+.||++.+++.+++++++...|+++.=+|-- ..+|.|..+|+|.+++++
T Consensus 162 It--al~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL-------DVVaiG~~~G~ViifNlK 232 (910)
T KOG1539|consen 162 IT--ALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL-------DVVAIGLENGTVIIFNLK 232 (910)
T ss_pred ee--eEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc-------eEEEEeccCceEEEEEcc
Confidence 44 3345542 4566766 7999999999999999999999999999999987 689999999999999999
Q ss_pred CcceEEEEEec-cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccccee
Q 040987 152 VPELLKTIDVK-FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGV 230 (762)
Q Consensus 152 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 230 (762)
.++.+.+|+.. .+|.++.| ..|+.... ++|+..|.+.+||++..+.....
T Consensus 233 ~dkil~sFk~d~g~VtslSF--------rtDG~p~l---------------------as~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 233 FDKILMSFKQDWGRVTSLSF--------RTDGNPLL---------------------ASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred cCcEEEEEEccccceeEEEe--------ccCCCeeE---------------------EeccCCceEEEEEcCCCeeeeee
Confidence 99999999986 69999988 44555421 77889999999999999999777
Q ss_pred eeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc-CCCcEEEEeecCCeEEEE
Q 040987 231 TLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH-PTQRIVAAGDVTGRILIW 308 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~dg~v~vw 308 (762)
...|.+.|....|.|....+. ++.|+.+++|-.+++... .+..+...+|..+..|++|. .+|.++.+++.|++++.+
T Consensus 284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 778999999999999999988 457888887765544432 14446777999999999998 688999999999999999
Q ss_pred eccCCceeecccccccccccccccCCCCcccCCccccce---eeeccccceeEEEEecC-----CCEEEEEecCCeEEEE
Q 040987 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT---TWHWHPSEVSVLIFSSD-----GAYLYSGGKEGVLVVW 380 (762)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~s~~-----g~~l~s~~~dg~i~~w 380 (762)
++.....-+.... .......+... ...-.-.+|..+++... .+.++..-.+...+.|
T Consensus 363 s~~~e~~~~~l~~---------------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 363 SVISESQSQELGQ---------------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred hhhHHHHhHhhcc---------------cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence 8743321110000 00000000000 11112234555555321 2344444456789999
Q ss_pred ecCCCce-ec------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 381 QLDTGKK-KF------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 381 d~~~~~~-~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
+..+... .. +......+++++.++.|++.+.|...|.|.+|++++|-....+... ..|++.|.+++
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-------~ah~~~V~gla 500 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-------PAHKGEVTGLA 500 (910)
T ss_pred eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC-------ccccCceeEEE
Confidence 9887654 22 2224468999999999999999999999999999999888877411 12448999999
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
...-++.+++++.+|.+.+||.........+.. ...+.++..+.....+|.+. +|-.|++
T Consensus 501 ~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-----------~~~~~~iv~hr~s~l~a~~~---------ddf~I~v 560 (910)
T KOG1539|consen 501 VDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-----------GSSITGIVYHRVSDLLAIAL---------DDFSIRV 560 (910)
T ss_pred ecCCCceEEEccCcceEEEEecCCcceeeeecc-----------CCCcceeeeeehhhhhhhhc---------CceeEEE
Confidence 999999999999999999999988765555443 55688888998888999888 8899999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA 613 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 613 (762)
+|..+.+..+.+ .+| .+.|++++|||||++|++++.|++|++||+.++.++-.+ .-..+.++
T Consensus 561 vD~~t~kvvR~f-----~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~------------~vd~~~~s 622 (910)
T KOG1539|consen 561 VDVVTRKVVREF-----WGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL------------LVDSPCTS 622 (910)
T ss_pred EEchhhhhhHHh-----hcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE------------ecCCccee
Confidence 999999887776 689 999999999999999999999999999999999887665 24678899
Q ss_pred EEEcCCCcEEEEEc-C-CeEEEEeCCC
Q 040987 614 AAFSADGSVLAVAA-E-TVITLWDPDR 638 (762)
Q Consensus 614 ~~~s~dg~~la~~~-d-~~i~iwd~~~ 638 (762)
+.|||+|.+||+.. | ..|++|.=.+
T Consensus 623 ls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eEECCCCCEEEEEEecCceEEEEEchh
Confidence 99999999999998 6 7899996544
No 24
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1e-37 Score=306.25 Aligned_cols=546 Identities=15% Similarity=0.130 Sum_probs=371.5
Q ss_pred ceeEEEEec--CCCeEEEEecCC-cceeeeecCcccccCCceeecCCCEEEEEe---CCEEEEEEcccceEEeeecCCcc
Q 040987 42 RSFIFAVAR--SSGLCRTAEYPA-VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHKA 115 (762)
Q Consensus 42 ~~~~~a~~~--~~g~i~~~~~~~-~~~~~~~~h~~~v~~~~~~s~dg~~la~~~---~~~i~iwd~~~~~~~~~l~~h~~ 115 (762)
.+.|+|+|- ....+++|+++. +....+..|+-.|+| ++|||.++|+++.+ |-.|.+||....-.... +.-..
T Consensus 89 ~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtc-vaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~as-nkiss 166 (1080)
T KOG1408|consen 89 NGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTC-VAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGAS-NKISS 166 (1080)
T ss_pred CCcEEEecccCCCccceeeeeccccchhhhhhcccccee-eeecCCCcEEEeeccccceEEEhhhhhhcccccc-cccce
Confidence 377999987 677899999997 445567999999998 99999999999887 46889998754432221 22457
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEE-E--Eeccc-eEEEeecccccCCcccCC-CCCceEEE
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-I--DVKFS-IFSMVIPSLLRQPAQSDE-KPPKLFAY 190 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~-~--~~~~~-v~~~~~~~~~~~~~~~~~-~~~~~~~~ 190 (762)
.|.+++|+.|| .|++|++ ...|++|.+..++..+. + .+... .-.+.++.++... ...+ .-...+|.
T Consensus 167 ~Vsav~fsEdg-------SYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ava-Cg~gicAestfai 237 (1080)
T KOG1408|consen 167 VVSAVAFSEDG-------SYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVA-CGVGICAESTFAI 237 (1080)
T ss_pred eEEEEEEccCC-------ceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhh-hcCcccccceEEE
Confidence 79999999999 7888887 58999999988773221 0 00000 0001111000000 0000 00011222
Q ss_pred EE------eeeccccCcCC-----------c--cCCCCCCccccEEEEecCCccccceeeecc-----------------
Q 040987 191 LS------VEDTRETTKSH-----------K--KEPRPNTMNGRICKCNLTESRLAGGVTLAE----------------- 234 (762)
Q Consensus 191 ~~------~~~~~~~~~~~-----------~--~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~----------------- 234 (762)
.. ..+++++..|. + -+-++|+.+|.|++++.++..........|
T Consensus 238 t~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s 317 (1080)
T KOG1408|consen 238 TAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS 317 (1080)
T ss_pred ecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence 11 11122211110 0 001889999999999988755542222111
Q ss_pred ------CCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-----------CcEE
Q 040987 235 ------MKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT-----------QRIV 296 (762)
Q Consensus 235 ------~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------~~~l 296 (762)
-....++.|.|....|. +-.|..++|||+++-... -.-.....|...|+.+.--|. ...+
T Consensus 318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv--gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF 395 (1080)
T KOG1408|consen 318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV--GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCF 395 (1080)
T ss_pred ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc--cceeeeeeccceeeeeccccccccCcccccCCccce
Confidence 11235678888888886 568999999999876643 222445578888888776551 1257
Q ss_pred EEeecCCeEEEEeccCCceeeccc-ccccccccccccCCCC---cccCCc---cccceeeeccccceeEEEEecCCCEEE
Q 040987 297 AAGDVTGRILIWRGFGDRTFATND-NKMNLNLMNNEEERPG---VRDNDD---ADLCTTWHWHPSEVSVLIFSSDGAYLY 369 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~h~~~v~~~~~s~~g~~l~ 369 (762)
.+++.|++|++|++.....-.... +..........-+... +..... .+...........+.+++.+|+|++|+
T Consensus 396 ~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA 475 (1080)
T KOG1408|consen 396 TTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA 475 (1080)
T ss_pred eEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec
Confidence 899999999999987632111100 0000000000000000 000000 001111222445789999999999999
Q ss_pred EEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCC---CCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCc
Q 040987 370 SGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESP---DPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 370 s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~ 444 (762)
+|...|++++|++..-+.. ....|...|.|+.||. ..++|++++.|.-|+|||+.. ..+++++.+|.
T Consensus 476 sGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS-------- 547 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS-------- 547 (1080)
T ss_pred ccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc--------
Confidence 9999999999999887764 5677899999999975 357899999999999999875 56677888877
Q ss_pred ccCceeeEEEeCCC--CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 445 YKGLCRDIAFNHDG--GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 445 ~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
..|+++.|.-.| ..+++++.|..|.+--.........+. +.+.. -....+++++..|..+++++++
T Consensus 548 --ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~---r~t~t--~~ktTlYDm~Vdp~~k~v~t~c----- 615 (1080)
T KOG1408|consen 548 --SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP---RHTQT--LSKTTLYDMAVDPTSKLVVTVC----- 615 (1080)
T ss_pred --cceeEEEEeecCCceEEEeccCchhhheehhccccCceecc---ccccc--cccceEEEeeeCCCcceEEEEe-----
Confidence 889999998877 678999999866543332211111111 11100 0146689999999999999999
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
.|..|+||++++++....++.. .+| .+....+...|.|.|+|+...|+++.++|+.+++++...
T Consensus 616 ----QDrnirif~i~sgKq~k~FKgs--~~~-eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m--------- 679 (1080)
T KOG1408|consen 616 ----QDRNIRIFDIESGKQVKSFKGS--RDH-EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM--------- 679 (1080)
T ss_pred ----cccceEEEeccccceeeeeccc--ccC-CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh---------
Confidence 8999999999999998887652 456 677888999999999999999999999999999877665
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
.+|...|+.+.|++|.+.|++.+ ||.|.||.+..
T Consensus 680 --~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 --TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 48999999999999999999987 99999999753
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.6e-38 Score=285.11 Aligned_cols=334 Identities=16% Similarity=0.221 Sum_probs=285.3
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+..|.+.|++++.+|+.+++++|+.|..-.+|++.++. ....+.+|.+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge------------------------------~~~eltgHKD 107 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE------------------------------FAGELTGHKD 107 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc------------------------------ceeEecCCCC
Confidence 5677899999999999999999999999999999997774 3468899999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
.|+++.|+.||.+|++|+.+|.|++|+..++..... ......+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.
T Consensus 108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS 187 (399)
T ss_pred ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence 999999999999999999999999999999987643 3456678899999999999999999999999999988899999
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+|. ..+.+-.|.|||+.++++..||+|++||..+++++..+.... .....++.++..+..+
T Consensus 188 Gh~----------~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e---------~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 188 GHN----------SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE---------GLELPCISLNLAGSTL 248 (399)
T ss_pred CCC----------CCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc---------cCcCCcccccccccee
Confidence 988 677899999999999999999999999999998877765433 2346778888888888
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEE--E-eecCC--CCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST--I-VYEPH--RDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~-~~~~h--~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
..++ .++.+++-+..+++.+..... . +...+ ....|.++.++..-.+.|+|+.||+|.|||+...+
T Consensus 249 ~~g~---------~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 249 TKGN---------SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred Eecc---------CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 8887 777888877777766554431 0 01122 12344445555566789999999999999999888
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
.+...+ |...|+.+.|-+ ..+|+++. +|.|+.||.++|+++..+.||..+|.+++++|+.++++|+
T Consensus 320 ~R~~c~------------he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 320 LRHICE------------HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred hheecc------------CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 877764 888999999998 67777776 9999999999999999999999999999999999999999
Q ss_pred EcCCCCeEEEEECC
Q 040987 668 SWGSKPQLSVWNMS 681 (762)
Q Consensus 668 ~~d~~~~v~vwd~~ 681 (762)
|.|++ .+|+++.
T Consensus 387 s~D~~--a~VF~v~ 398 (399)
T KOG0296|consen 387 SDDNT--ALVFEVP 398 (399)
T ss_pred cCCCe--EEEEecC
Confidence 99998 9999875
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-38 Score=273.43 Aligned_cols=288 Identities=17% Similarity=0.240 Sum_probs=249.9
Q ss_pred ceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 346 CTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
..++.+|.+.|+.++..+. ...+++++.|.++.+|++..... ..+.+|...|..++.++||++.++++.|+.+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 4678999999999999886 46788999999999999875432 3567889999999999999999999999999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
++||+.+++..+.|.+|. ..|.+++|++|.+.+++|+.|.+|.+|+...... .++.... + .
T Consensus 88 rlWDl~~g~~t~~f~GH~----------~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~--~------~ 148 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHT----------KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDS--H------R 148 (315)
T ss_pred EEEEecCCcEEEEEEecC----------CceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCC--C------c
Confidence 999999999999999998 7889999999999999999999999999976532 2322211 1 5
Q ss_pred eeEEEEEEecC--CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 499 VVVTLVALSQD--GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 499 ~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
..|.++.|+|+ ..+|++++ .|++|++||+++.+....+ .+| .+.++.+++||||.++++|+.|
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s---------~DktvKvWnl~~~~l~~~~-----~gh-~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSAS---------WDKTVKVWNLRNCQLRTTF-----IGH-SGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEcc---------CCceEEEEccCCcchhhcc-----ccc-cccEEEEEECCCCCEEecCCCC
Confidence 78999999998 67888888 8999999999998776655 688 9999999999999999999999
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecc----c----
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGE----T---- 648 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~----~---- 648 (762)
|.+.+||++.++....+ .+...|.+++|+|+.-+|+.+.+..|+|||++++.++..++. .
T Consensus 214 g~~~LwdL~~~k~lysl------------~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~ 281 (315)
T KOG0279|consen 214 GEAMLWDLNEGKNLYSL------------EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKA 281 (315)
T ss_pred ceEEEEEccCCceeEec------------cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccccccc
Confidence 99999999999987776 378999999999999888888888899999999987776532 1
Q ss_pred -cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 649 -LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 649 -~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.-...+++||+||..|+++..|+. |++|.+.
T Consensus 282 ~~~~clslaws~dG~tLf~g~td~~--irv~qv~ 313 (315)
T KOG0279|consen 282 GDPICLSLAWSADGQTLFAGYTDNV--IRVWQVA 313 (315)
T ss_pred CCcEEEEEEEcCCCcEEEeeecCCc--EEEEEee
Confidence 122677999999999999999998 9999875
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-37 Score=272.25 Aligned_cols=297 Identities=13% Similarity=0.201 Sum_probs=254.2
Q ss_pred cceeeeccCCCceEEEECCCCCEE-E-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 227 AGGVTLAEMKEPQVITISSSGKYF-G-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~~l-a-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
++..+.+|++.|..++..+.+.-+ . ++.|..+.+|++.......-.+.+.+.+|...|..+..++||++.++++.|+.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 346788999999999999986544 3 45799999999987655444456778899999999999999999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
+++||+.+++ ..+.|.+|...|.+++|++|.+.+++|+.|.+|.+|+...
T Consensus 87 lrlWDl~~g~------------------------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 87 LRLWDLATGE------------------------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG 136 (315)
T ss_pred EEEEEecCCc------------------------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc
Confidence 9999998874 3478999999999999999999999999999999999987
Q ss_pred CceeccCCC--CCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 385 GKKKFLPRI--GSPLLYFTESPD--PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 385 ~~~~~~~~~--~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
......... .+-|.|+.|+|+ ...|+.++.|+++++||+++.+....+.+|. +.++.+++||||..
T Consensus 137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~----------~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS----------GYVNTVTVSPDGSL 206 (315)
T ss_pred cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc----------ccEEEEEECCCCCE
Confidence 665444443 678999999998 6889999999999999999999999999988 89999999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
.++|+.||.+.+||+..++.++.+.. ...|.+++|+|+.-.|+.+. +..|+|||+++..
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~a-----------~~~v~sl~fspnrywL~~at----------~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLEA-----------FDIVNSLCFSPNRYWLCAAT----------ATSIKIWDLESKA 265 (315)
T ss_pred EecCCCCceEEEEEccCCceeEeccC-----------CCeEeeEEecCCceeEeecc----------CCceEEEeccchh
Confidence 99999999999999999988776654 67799999999998888874 4579999999998
Q ss_pred ceeEEEEEeecC----CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 541 KEFTLSTIVYEP----HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 541 ~~~~~~~~~~~~----h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
.+..+......+ . .....+++|++||..|+.|-.|+.|++|.+.
T Consensus 266 ~v~~l~~d~~g~s~~~~-~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 266 VVEELKLDGIGPSSKAG-DPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhccccccccccccC-CcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 877665321111 1 2235678999999999999999999999874
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.2e-37 Score=286.18 Aligned_cols=336 Identities=18% Similarity=0.311 Sum_probs=282.3
Q ss_pred eeeeccCcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceee----
Q 040987 275 KITLHHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW---- 349 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 349 (762)
+... |...|.+++|+|-.. .+++|+.|-..++|++......-..+. .+ +.....
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~--------------~l------rh~~~~~~~s 231 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL--------------VL------RHCIREGGKS 231 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh--------------hh------hhhhhhhccc
Confidence 4444 999999999999655 899999999999999864210000000 00 000000
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
......|++++|+.+|..|++|+.||.+++|+........+..|.++|.++.|+.+|.+|++++.|+++.+||..++...
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 11245799999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+.+.-|. .....+.|-.+. .+++++.|+.|+++.+....+..++.. | .+.|.++.|.|.
T Consensus 312 q~f~~~s----------~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~G----H------~g~V~alk~n~t 370 (524)
T KOG0273|consen 312 QQFEFHS----------APALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIG----H------HGEVNALKWNPT 370 (524)
T ss_pred Eeeeecc----------CCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeec----c------cCceEEEEECCC
Confidence 9988876 333667777654 588889999999999988877776654 2 788999999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC---------eEEEEeCCCcEE
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR---------AAVSSSYGGDFK 580 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~---------~l~~~~~dg~i~ 580 (762)
|.+|++++ .|++++||+.........+ .+| ...|..+.|+|+|. .+++++.|++|+
T Consensus 371 g~LLaS~S---------dD~TlkiWs~~~~~~~~~l-----~~H-skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~ 435 (524)
T KOG0273|consen 371 GSLLASCS---------DDGTLKIWSMGQSNSVHDL-----QAH-SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK 435 (524)
T ss_pred CceEEEec---------CCCeeEeeecCCCcchhhh-----hhh-ccceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence 99999999 9999999998887766665 578 88999999999754 799999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
+||+..+.+...+ ..|..+|++++|||+|+++|+|+ ||.|.+|+.++++..+...+ .+.|..++|+.
T Consensus 436 lwdv~~gv~i~~f-----------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 436 LWDVESGVPIHTL-----------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNA 503 (524)
T ss_pred EEEccCCceeEee-----------ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcC
Confidence 9999988877665 46899999999999999999999 99999999999999999874 46699999999
Q ss_pred CCCEEEEEEcCCCCeEEEEECC
Q 040987 660 SSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
+|..|..+-.|+. +++-|+.
T Consensus 504 ~G~kl~~~~sd~~--vcvldlr 523 (524)
T KOG0273|consen 504 AGDKLGACASDGS--VCVLDLR 523 (524)
T ss_pred CCCEEEEEecCCC--ceEEEec
Confidence 9999999999998 9888764
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-36 Score=285.25 Aligned_cols=315 Identities=19% Similarity=0.281 Sum_probs=268.9
Q ss_pred EEeecCCcceeEEEEecCCCeEEEEecCC------ccee-----eeecC----cccccCCceeecCCCEEEEEe-CCEEE
Q 040987 34 LIERKPRSRSFIFAVARSSGLCRTAEYPA------VNSK-----MIRGG----RSYVSSPPAFSNDVKRLLVCT-SNTVS 97 (762)
Q Consensus 34 ~~~~~~~~~~~~~a~~~~~g~i~~~~~~~------~~~~-----~~~~h----~~~v~~~~~~s~dg~~la~~~-~~~i~ 97 (762)
..+.....+..++|+|+.|-..++|++.. .+.. ..-++ ...|++ ++|+.||.+||+|. +|.++
T Consensus 182 ~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~-L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 182 FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTS-LDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcce-EEecCCCCeEEEeecCcEEE
Confidence 33333334556899999999999999985 1110 01112 356887 99999999999999 89999
Q ss_pred EEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccC
Q 040987 98 IFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQ 176 (762)
Q Consensus 98 iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 176 (762)
||+. +|.++.+|..|.++|.++.|+.+| .||++++.|+++.+||..+|+..+.++.|. +...+.+
T Consensus 261 iw~~-~G~l~~tl~~HkgPI~slKWnk~G-------~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW------ 326 (524)
T KOG0273|consen 261 IWNK-DGNLISTLGQHKGPIFSLKWNKKG-------TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW------ 326 (524)
T ss_pred EEec-CchhhhhhhccCCceEEEEEcCCC-------CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE------
Confidence 9995 899999999999999999999999 799999999999999999999999999887 4244432
Q ss_pred CcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eC
Q 040987 177 PAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQ 255 (762)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~ 255 (762)
..+.. | ++.+.|+.|.++.+...+++ ....+|.+.|.++.|.|.|.+|+++ +|
T Consensus 327 --~~~~~------F-----------------~ts~td~~i~V~kv~~~~P~-~t~~GH~g~V~alk~n~tg~LLaS~SdD 380 (524)
T KOG0273|consen 327 --QSNDE------F-----------------ATSSTDGCIHVCKVGEDRPV-KTFIGHHGEVNALKWNPTGSLLASCSDD 380 (524)
T ss_pred --ecCce------E-----------------eecCCCceEEEEEecCCCcc-eeeecccCceEEEEECCCCceEEEecCC
Confidence 00111 1 77889999999999999988 5666699999999999999999955 79
Q ss_pred CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc---------EEEEeecCCeEEEEeccCCceeeccccccccc
Q 040987 256 RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR---------IVAAGDVTGRILIWRGFGDRTFATNDNKMNLN 326 (762)
Q Consensus 256 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---------~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 326 (762)
++++||........ .-+..|...|..+.|+|+|. .+++++.|++|++||+..+
T Consensus 381 ~TlkiWs~~~~~~~-----~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------------- 442 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSV-----HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------------- 442 (524)
T ss_pred CeeEeeecCCCcch-----hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------
Confidence 99999998877765 67889999999999999764 7899999999999999776
Q ss_pred ccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCC
Q 040987 327 LMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (762)
.++..|..|..+|++++|+|+|+++++|+.||.|.+|+..+++........+.|..++|+.+|
T Consensus 443 -----------------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 443 -----------------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAG 505 (524)
T ss_pred -----------------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCC
Confidence 456789999999999999999999999999999999999999998888888889999999999
Q ss_pred CeEEEEecCCcEEEEEcC
Q 040987 407 SLSSISCADNQVHLLKMP 424 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~ 424 (762)
.+|..+..|+.+++.|++
T Consensus 506 ~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 506 DKLGACASDGSVCVLDLR 523 (524)
T ss_pred CEEEEEecCCCceEEEec
Confidence 999999999999999875
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-35 Score=295.65 Aligned_cols=352 Identities=15% Similarity=0.239 Sum_probs=283.2
Q ss_pred eecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEE
Q 040987 68 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIK 146 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~ 146 (762)
+...+.+|.. ++|.|..-++.++- +|.|.+||..=+.++..|.+|.++|..++|+|.+ .+++||+.|..|+
T Consensus 5 fEskSsRvKg-lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q-------plFVSGGDDykIk 76 (1202)
T KOG0292|consen 5 FESKSSRVKG-LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ-------PLFVSGGDDYKIK 76 (1202)
T ss_pred hhcccccccc-eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC-------CeEEecCCccEEE
Confidence 3445678887 99999999999998 7999999999999999999999999999999999 6889999999999
Q ss_pred EEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 147 YWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 147 vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
||+..+.+|+.++.+|. -|..+.| ..+.|+. ++++.|-+|+|||+.+++
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~F----------HheyPWI--------------------lSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFF----------HHEYPWI--------------------LSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred EEecccceehhhhccccceeEEeec----------cCCCceE--------------------EEccCCCeEEEEeccCCc
Confidence 99999999999999997 5666655 2222222 678999999999999999
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhh------------------------hheeeeeeecc
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAE------------------------RVVMRKITLHH 280 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~------------------------~~~~~~~~~~~ 280 (762)
++ ..+.+|.-.|.|.+|+|...+++++ -|.+|+|||+..-... ...++.++.+|
T Consensus 127 ~i-avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 127 CI-AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred eE-EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 99 8999999999999999988888854 6999999998632110 12356778899
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
..+|+-++|+|.-..+++|+.|..|++|.+...+..+ +.+.++|.+.|.++-
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE----------------------------vDtcrgH~nnVssvl 257 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE----------------------------VDTCRGHYNNVSSVL 257 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEecccccee----------------------------ehhhhcccCCcceEE
Confidence 9999999999999999999999999999987665553 467889999999999
Q ss_pred EecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 361 FSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
|+|..+++++.+.|++|++||+....... +....+....++-+|..+++++| .|+.+.+|.++..++
T Consensus 258 fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErp----------- 325 (1202)
T KOG0292|consen 258 FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERP----------- 325 (1202)
T ss_pred ecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCc-----------
Confidence 99999999999999999999999877654 44566789999999999999877 666777777653222
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
+.+++ ++.|...- |..|+.+|+.+.+.......-..+ ....++.++.++|....+..++
T Consensus 326 -----------a~~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g-----~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 326 -----------AYAVN--GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPG-----TLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred -----------eEEEc--CCEEEEEc-cceEEeeeccccccceeEeccCCC-----cccCCcceeeeccccCeEEEEe
Confidence 22222 33444443 888999999886544433322111 0145678899999776655554
No 31
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.2e-35 Score=286.29 Aligned_cols=552 Identities=12% Similarity=0.160 Sum_probs=383.2
Q ss_pred EEEEecCCCeEEEEecCCc-ceeeeecCcccccCCceeecCCC---EEEEEe-CCEEEEEEcccc--eEEeeecCCccce
Q 040987 45 IFAVARSSGLCRTAEYPAV-NSKMIRGGRSYVSSPPAFSNDVK---RLLVCT-SNTVSIFSTSTG--LQISSLEGHKAPV 117 (762)
Q Consensus 45 ~~a~~~~~g~i~~~~~~~~-~~~~~~~h~~~v~~~~~~s~dg~---~la~~~-~~~i~iwd~~~~--~~~~~l~~h~~~V 117 (762)
++|.| ....|.+||-.+. ....+.||.++|+| +.+-|+.+ ++++|+ |+.|++|.++.. ..+.++++|...+
T Consensus 27 ~vafG-a~~~Iav~dp~k~~i~t~l~GH~a~VnC-~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~ 104 (764)
T KOG1063|consen 27 LVAFG-AGPAIAVADPEKILIVTTLDGHVARVNC-VHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKEC 104 (764)
T ss_pred eEEec-CCceEEEeCcccceeEEeccCCccceEE-EEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeE
Confidence 45554 3466778887764 55677999999998 99999888 788888 899999999844 3567788877766
Q ss_pred eEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcc--eEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeee
Q 040987 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE--LLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVED 195 (762)
Q Consensus 118 ~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (762)
.|+.=.+. .....+.|+++.+||.+..+ +...+..... .+..++ |+++...+
T Consensus 105 ~cv~a~~~---------~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k----~~ipLc-------------L~~~~~~~ 158 (764)
T KOG1063|consen 105 VCVVARSS---------VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIK----EAIPLC-------------LAALKNNK 158 (764)
T ss_pred EEEEeeee---------EEEeeccCceEEEeecCCCceeeehheehhhh----hHhhHH-------------HhhhccCC
Confidence 66643222 22223789999999995554 3333332210 001111 11111111
Q ss_pred ccccCcCCccCCCCCCccccEEEEecCCcccc-ceeeeccCCCceEEEECCCCC---EEEEE-eCCeEEEEEccCchhh-
Q 040987 196 TRETTKSHKKEPRPNTMNGRICKCNLTESRLA-GGVTLAEMKEPQVITISSSGK---YFGIR-KQRKLLIWKVPDVEAE- 269 (762)
Q Consensus 196 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~spdg~---~la~~-~~~~i~iwd~~~~~~~- 269 (762)
.... +.|+.+..|.++.-..++.. ...+.+|...|.+++|..-+. +||++ .|..|+||.+.-+...
T Consensus 159 ~~ll--------a~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~ 230 (764)
T KOG1063|consen 159 TFLL--------ACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED 230 (764)
T ss_pred cEEE--------EecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc
Confidence 1111 77888889998877655433 256789999999999987554 55644 7999999987533300
Q ss_pred -------------------hhee------eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccccc
Q 040987 270 -------------------RVVM------RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMN 324 (762)
Q Consensus 270 -------------------~~~~------~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~ 324 (762)
...+ ...+.+|.+.|.++.|+|.+..|++++.|.++.+|...+..-+-..
T Consensus 231 ~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~----- 305 (764)
T KOG1063|consen 231 SNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD----- 305 (764)
T ss_pred ccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE-----
Confidence 0000 1234599999999999999999999999999999987655222100
Q ss_pred ccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC-ce---eccCCCCCCeEEE
Q 040987 325 LNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG-KK---KFLPRIGSPLLYF 400 (762)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~-~~---~~~~~~~~~v~~~ 400 (762)
.-.+..+.+.....+...|+|+++.+++-+..|..++|..... .. ....+|-..|..+
T Consensus 306 ------------------~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv 367 (764)
T KOG1063|consen 306 ------------------VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDV 367 (764)
T ss_pred ------------------EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceee
Confidence 0111222344556889999999999999999999999983332 22 3456788899999
Q ss_pred EeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC-
Q 040987 401 TESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD- 478 (762)
Q Consensus 401 ~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~- 478 (762)
+|+|.|.+|++.+.|.+-+++-.-. .+.-..+. .|..|...+.++++-+....+++|.++..+|+|+....
T Consensus 368 ~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia-------RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 368 DWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA-------RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred eecCCCCEEEEeccccceeeecccccccceeeec-------ccccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence 9999999999999999999987651 11122222 23345567889999886667888888888898875421
Q ss_pred --------------C-----------------ceee------------EEee------ccccc----------------C
Q 040987 479 --------------R-----------------GISE------------VQVC------ERNHQ----------------P 493 (762)
Q Consensus 479 --------------~-----------------~~~~------------~~~~------~~~~~----------------~ 493 (762)
. .... .+.. .-.+. .
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 0 0000 0000 00000 1
Q ss_pred CCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 494 GDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 494 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
..+|...|.+++.+|+|+++|+++.. ....-..|++|+..+......+ .+| .-.|+.++|||||++|++.
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS----~~~ehAvI~lw~t~~W~~~~~L-----~~H-sLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKS----SLKEHAVIRLWNTANWLQVQEL-----EGH-SLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhh----CCccceEEEEEeccchhhhhee-----ccc-ceEEEEEEECCCCcEEEEe
Confidence 12378899999999999999999732 2224468999999988777665 678 9999999999999999999
Q ss_pred eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC--eEEEE--eccc
Q 040987 574 SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN--VLVAV--IGET 648 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~--~~~~~--l~~~ 648 (762)
+.|+++.+|+......... .+.+ ...|..-|.++.|+||++++|+++ |.+|++|..... +.+.. ...+
T Consensus 591 sRDRt~sl~~~~~~~~~e~----~fa~---~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~ 663 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEF----RFAC---LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF 663 (764)
T ss_pred ecCceEEeeeeecccchhh----hhcc---ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence 9999999999854432211 1111 457899999999999999999999 999999999877 44433 2347
Q ss_pred cCceeEEEEeC----C-CCEEEEEEcCCCCeEEEEECC
Q 040987 649 LTPIMNMSFVG----S-SEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 649 ~~~v~~~~~s~----d-g~~l~s~~~d~~~~v~vwd~~ 681 (762)
...|+.++|.| + +..++.|-..|. |.+|...
T Consensus 664 ~~aVTAv~~~~~~~~e~~~~vavGle~Ge--I~l~~~~ 699 (764)
T KOG1063|consen 664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGE--IVLWRRK 699 (764)
T ss_pred CCceeeEEeeccccccccceEEEEecccE--EEEEecc
Confidence 78899999988 2 225566666776 9999865
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-35 Score=283.75 Aligned_cols=446 Identities=14% Similarity=0.161 Sum_probs=337.4
Q ss_pred eeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCc
Q 040987 108 SSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPK 186 (762)
Q Consensus 108 ~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~ 186 (762)
+++..|+..|.++.|+|.. .++.++-..|.|.|||.++..+++.++... |+.+..|
T Consensus 7 rk~~~rSdRVKsVd~HPte-------Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kf---------------- 63 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTE-------PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKF---------------- 63 (794)
T ss_pred hHhhccCCceeeeecCCCC-------ceEEEeeecCeeEEEecccceeeeeeeecccchhhhee----------------
Confidence 4566799999999999999 577788889999999999999999999887 8888766
Q ss_pred eEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccC
Q 040987 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPD 265 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~ 265 (762)
++- +.|.++|+.|..|++|+..+++.+ .....|...|++++.+|...++.+ ++|-.|++||.+.
T Consensus 64 -iaR-------------knWiv~GsDD~~IrVfnynt~ekV-~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 64 -IAR-------------KNWIVTGSDDMQIRVFNYNTGEKV-KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred -eec-------------cceEEEecCCceEEEEecccceee-EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 222 122278999999999999999999 788899999999999999999985 4788999999987
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD 344 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (762)
+- ...+.+.+|...|.+++|.| |.+.+|+++-|++|+||.+... .
T Consensus 129 ~w----a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~------------------------------~ 174 (794)
T KOG0276|consen 129 EW----ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP------------------------------H 174 (794)
T ss_pred ce----eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC------------------------------C
Confidence 65 34578899999999999999 6679999999999999998544 3
Q ss_pred cceeeeccccceeEEEEecCC--CEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 345 LCTTWHWHPSEVSVLIFSSDG--AYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
+..++.+|...|+++.+-+.| .+|++|++|.++++||..+..++ .+.+|...|..+.|+|.-..+++|+.||+++||
T Consensus 175 ~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 175 PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 557899999999999997744 69999999999999999999985 577899999999999999999999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+..+-+...++.-.. ..+.+++-.+.++.+++|.++|.+. ..+-.+.+
T Consensus 255 hs~Ty~lE~tLn~gl----------eRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP--------------------- 302 (794)
T KOG0276|consen 255 NSKTYKLEKTLNYGL----------ERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEP--------------------- 302 (794)
T ss_pred cCcceehhhhhhcCC----------ceEEEEeecCCCCeEEEeccCCcEE-EEccCCCC---------------------
Confidence 999887777765443 6889999999988999998888554 34433322
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEE------EecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW------VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw------d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
.+..++.|+.+-+... .-..+.+- ++..++.+. +.... -+...-.-..++-+|+|+++++++
T Consensus 303 -~vsMd~~gKIiwa~~~--------ei~~~~~ks~~~~~ev~DgErL~-LsvKe-Lgs~eiyPq~L~hsPNGrfV~Vcg- 370 (794)
T KOG0276|consen 303 -AVSMDSNGKIIWAVHS--------EIQAVNLKSVGAQKEVTDGERLP-LSVKE-LGSVEIYPQTLAHSPNGRFVVVCG- 370 (794)
T ss_pred -ceeecCCccEEEEcCc--------eeeeeeceeccCcccccCCcccc-chhhh-ccccccchHHhccCCCCcEEEEec-
Confidence 2333444444433321 11111111 222232211 10000 000011123577899999888776
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeE
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMN 654 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~ 654 (762)
||.-.||..-..+. ..-+.-....|++|....|+-. ++.|+++ ++.+....+...- .
T Consensus 371 dGEyiIyTala~Rn----------------K~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~----~ 428 (794)
T KOG0276|consen 371 DGEYIIYTALALRN----------------KAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM----S 428 (794)
T ss_pred CccEEEEEeeehhh----------------cccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc----c
Confidence 78888886432111 1234556789999977777765 8999998 7777776664221 1
Q ss_pred EEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 655 MSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 655 ~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
..+--.|.+|...+.|. +++||.+++++++++.....
T Consensus 429 ~e~i~gg~Llg~~ss~~---~~fydW~~~~lVrrI~v~~k 465 (794)
T KOG0276|consen 429 AEGIFGGPLLGVRSSDF---LCFYDWESGELVRRIEVTSK 465 (794)
T ss_pred eeeecCCceEEEEeCCe---EEEEEcccceEEEEEeeccc
Confidence 22333567788888777 99999999999999887765
No 33
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=266.31 Aligned_cols=477 Identities=14% Similarity=0.156 Sum_probs=364.7
Q ss_pred eeEEEEecCCC--------eEEEEecCCcceeeeecC-cccccCCceeec--CCCEEEEEeC---CEEEEEEcccceEEe
Q 040987 43 SFIFAVARSSG--------LCRTAEYPAVNSKMIRGG-RSYVSSPPAFSN--DVKRLLVCTS---NTVSIFSTSTGLQIS 108 (762)
Q Consensus 43 ~~~~a~~~~~g--------~i~~~~~~~~~~~~~~~h-~~~v~~~~~~s~--dg~~la~~~~---~~i~iwd~~~~~~~~ 108 (762)
...+|+|...| .+++||..+.+.+...|. ...|.| ++||+ .|.+|+...+ ..+.|||.+.+..+.
T Consensus 116 ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~-vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~ 194 (626)
T KOG2106|consen 116 RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTC-VAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG 194 (626)
T ss_pred ceeeccCcccccCCCcCCCeeeecccccceeeeeecccccccee-eeecccCCCceEEEecCCCccccchhhchhhhccC
Confidence 56788887766 489999888777776664 445665 99997 4677777763 689999999988887
Q ss_pred eecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEE---Eecc--ceEEEeecccccCCcccCCC
Q 040987 109 SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI---DVKF--SIFSMVIPSLLRQPAQSDEK 183 (762)
Q Consensus 109 ~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~---~~~~--~v~~~~~~~~~~~~~~~~~~ 183 (762)
..+.-...|....|.|.+. .++++++ .+.+.+|+++.+.+.++. +.++ -|.+++| ..++.
T Consensus 195 ~vk~sne~v~~a~FHPtd~------nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F--------~engd 259 (626)
T KOG2106|consen 195 PVKTSNEVVFLATFHPTDP------NLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF--------LENGD 259 (626)
T ss_pred cceeccceEEEEEeccCCC------cEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEE--------cCCCC
Confidence 7777788899999999996 5666666 589999999998776653 2222 4555555 33333
Q ss_pred CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEc
Q 040987 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKV 263 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~ 263 (762)
. ++|.++|.|.||+..+.+..++.. .|.+.|.+++...+|.+|..+.|..|..||-
T Consensus 260 v-----------------------iTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~ 315 (626)
T KOG2106|consen 260 V-----------------------ITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDD 315 (626)
T ss_pred E-----------------------EeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEeecCccceEEeccc
Confidence 2 789999999999998888886666 9999999999999999999778999999993
Q ss_pred cCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcc
Q 040987 264 PDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDA 343 (762)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (762)
.-.+. ....+....+.|..++=...+ |+.|...+.|..=.++++-
T Consensus 316 ~y~k~----r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f----------------------------- 360 (626)
T KOG2106|consen 316 NYRKL----RETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGF----------------------------- 360 (626)
T ss_pred ccccc----ccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCc-----------------------------
Confidence 22221 112233455677777654333 7777777777665554432
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
.....+|.+..+.++.+|+.+++++++.|+.+++|+ ..+.........+..++.|+|.| .++.|...|...+.|.
T Consensus 361 --~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 361 --TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDT 435 (626)
T ss_pred --eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEec
Confidence 245678999999999999999999999999999999 45555666677889999999999 9999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
++...+..-.. . ..+..+.|+|+|.+||+|+.|+.|++|.+..+........... ..+|+.
T Consensus 436 e~~~lv~~~~d-~----------~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~--------gs~ith 496 (626)
T KOG2106|consen 436 ETQDLVTIHTD-N----------EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS--------GSPITH 496 (626)
T ss_pred ccceeEEEEec-C----------CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec--------CceeEE
Confidence 98666655444 3 5789999999999999999999999999976655443322211 467999
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE------------EEEee-cCCCCCceEEEEEcCCCCeE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL------------STIVY-EPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~------------~~~~~-~~h~~~~v~~~~~spd~~~l 570 (762)
+.||+|++++.+.+ .|-.|..|........... .-..+ ..+ ...|..++-+.+.+++
T Consensus 497 LDwS~Ds~~~~~~S---------~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~-~t~i~a~~rs~~~~~l 566 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNS---------GDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD-GTDINAVARSHCEKLL 566 (626)
T ss_pred eeecCCCceEEecc---------CceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC-CchHHHhhhhhhhhhh
Confidence 99999999999998 8899999954433222111 11111 234 5677778888889999
Q ss_pred EEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 571 VSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 571 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
|+|.+.|.|++|...-......+ ....+|...|++++|..+...+.+.+ |..|..|++
T Consensus 567 A~gdd~g~v~lf~yPc~s~rA~~--------he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 567 ASGDDFGKVHLFSYPCSSPRAPS--------HEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hccccCceEEEEccccCCCcccc--------eeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999999999987654443332 23457899999999999888888776 999999986
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.4e-35 Score=265.79 Aligned_cols=337 Identities=10% Similarity=0.127 Sum_probs=282.5
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+..|...|.+++.+|+.+++|+| .|..-.+|++.+++.. ....+|++.|+++.|+.||.+||+|+.+|.|+|
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----eEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 3567799999999999988888855 7899999999999865 678899999999999999999999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC-Cc
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT-GK 386 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~-~~ 386 (762)
|...++... ..+...-..+.-+.|+|-+..|+.|+.||.+.+|.+.+ +.
T Consensus 133 ~~~stg~~~------------------------------~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~ 182 (399)
T KOG0296|consen 133 FKVSTGGEQ------------------------------WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL 182 (399)
T ss_pred EEcccCceE------------------------------EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce
Confidence 999877543 33444556788899999999999999999999999998 55
Q ss_pred eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 387 KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
.+.+.+|..++++-.|.|+|++++++..||+|++|+..+++++..+.+... ....++.++..+..++.|+.
T Consensus 183 ~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~---------~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 183 CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG---------LELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc---------CcCCccccccccceeEeccC
Confidence 677889999999999999999999999999999999999999998875441 45578889999999999999
Q ss_pred CceEEEEEcCCCCceeeEEe-ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 467 NYCIHFYSLLDDRGISEVQV-CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
++.+++.+..+++.+..... ...-....+.....|..+.++..-.+.|+|+ -||+|.|||+...+.....
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~---------vdG~i~iyD~a~~~~R~~c 324 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS---------VDGTIAIYDLAASTLRHIC 324 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc---------ccceEEEEecccchhheec
Confidence 99999999888876654432 0000011111133455555666677889998 8899999999988776554
Q ss_pred EEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 546 STIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
.| ...|..+.|-+ ..+|++++.+|.|+.||.++|...... .+|...|.+++++|+.+++++
T Consensus 325 ------~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y-----------~GH~~~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 325 ------EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY-----------TGHQMGILDFALSPQKRLVVT 385 (399)
T ss_pred ------cC-CCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE-----------ecCchheeEEEEcCCCcEEEE
Confidence 46 78899999998 789999999999999999999877665 589999999999999999999
Q ss_pred Ec-CCeEEEEeCC
Q 040987 626 AA-ETVITLWDPD 637 (762)
Q Consensus 626 ~~-d~~i~iwd~~ 637 (762)
++ |++.+|+++.
T Consensus 386 ~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 386 VSDDNTALVFEVP 398 (399)
T ss_pred ecCCCeEEEEecC
Confidence 99 9999999864
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=251.06 Aligned_cols=300 Identities=15% Similarity=0.204 Sum_probs=241.1
Q ss_pred eEEeeecCCccceeEEEEeCC-CCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCC
Q 040987 105 LQISSLEGHKAPVTTVIVVPA-STPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK 183 (762)
Q Consensus 105 ~~~~~l~~h~~~V~~v~~s~~-~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (762)
..++++++|.++|..++|+|. | ..|||++.|+.|+||+...+.......
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g-------~ilAscg~Dk~vriw~~~~~~s~~ck~----------------------- 54 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKG-------VILASCGTDKAVRIWSTSSGDSWTCKT----------------------- 54 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCc-------eEEEeecCCceEEEEecCCCCcEEEEE-----------------------
Confidence 356789999999999999999 7 688999999999999987533211100
Q ss_pred CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEE
Q 040987 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWK 262 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd 262 (762)
....+|+..|++++|+|.|++||++ .|.++.||.
T Consensus 55 ---------------------------------------------vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 55 ---------------------------------------------VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK 89 (312)
T ss_pred ---------------------------------------------eccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence 1233688899999999999999954 799999999
Q ss_pred ccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc
Q 040987 263 VPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD 342 (762)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (762)
-..++. .....+.+|...|.|++|+++|++||++++|..|.||.+.....+
T Consensus 90 k~~~ef---ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf-------------------------- 140 (312)
T KOG0645|consen 90 KEDGEF---ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF-------------------------- 140 (312)
T ss_pred cCCCce---eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE--------------------------
Confidence 887776 345778899999999999999999999999999999999766555
Q ss_pred cccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC-Cce---eccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 343 ADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT-GKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~-~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
++...++.|...|..+.|+|...+|++++.|.+|++|+-.. ... ..+.++...|.+++|++.|..|++++.|+++
T Consensus 141 -ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 141 -ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred -EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 47789999999999999999999999999999999998773 322 4577788899999999999999999999999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
+||...+. +. ..|...+..+.|. ...|++++.|+.|++|.....-.-..+..... ....|.
T Consensus 220 ~Iw~~~~~-----~~---------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~---~~~aHe 280 (312)
T KOG0645|consen 220 SIWRLYTD-----LS---------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK---KEGAHE 280 (312)
T ss_pred EeeeeccC-----cc---------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh---hhcccc
Confidence 99986521 11 1233677889998 45799999999999998764321111111111 112236
Q ss_pred eeEEEEEEecC-CCeEEEEeeeccccCCCceeEEEEEEec
Q 040987 499 VVVTLVALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 499 ~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~ 537 (762)
..|++++|+|. ..+|++++ .||.+++|.+.
T Consensus 281 ~dVNsV~w~p~~~~~L~s~~---------DDG~v~~W~l~ 311 (312)
T KOG0645|consen 281 VDVNSVQWNPKVSNRLASGG---------DDGIVNFWELE 311 (312)
T ss_pred cccceEEEcCCCCCceeecC---------CCceEEEEEec
Confidence 78999999995 67888888 89999999875
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=250.89 Aligned_cols=297 Identities=21% Similarity=0.287 Sum_probs=240.5
Q ss_pred eeeeecCcccccCCceeecC-CCEEEEEe-CCEEEEEEccc---ceEEeee-cCCccceeEEEEeCCCCcccceeeeEEe
Q 040987 65 SKMIRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTST---GLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWT 138 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~d-g~~la~~~-~~~i~iwd~~~---~~~~~~l-~~h~~~V~~v~~s~~~~~~~~l~~~l~s 138 (762)
...+.||++++-. ++|+|- |..||+++ |+.|+||+... -.+...+ .+|...|.+++|+|.| +|||+
T Consensus 7 ~~~~~gh~~r~W~-~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-------~~La~ 78 (312)
T KOG0645|consen 7 EQKLSGHKDRVWS-VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-------RYLAS 78 (312)
T ss_pred EEeecCCCCcEEE-EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-------cEEEE
Confidence 4567999999997 999998 88999999 79999999874 3455555 4799999999999999 79999
Q ss_pred eecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEE
Q 040987 139 ASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICK 218 (762)
Q Consensus 139 ~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (762)
+|.|.++.||.-..++...
T Consensus 79 aSFD~t~~Iw~k~~~efec------------------------------------------------------------- 97 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFEC------------------------------------------------------------- 97 (312)
T ss_pred eeccceEEEeecCCCceeE-------------------------------------------------------------
Confidence 9999999999865443111
Q ss_pred EecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEE
Q 040987 219 CNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297 (762)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 297 (762)
+ ..+.+|...|.+++||++|++||++ .|+.|.||.+..+... .+...+..|...|..+.|+|...+|+
T Consensus 98 --------v-~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf--ec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 98 --------V-ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF--ECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred --------E-eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE--EEEeeeccccccccEEEEcCCcceeE
Confidence 0 3566788899999999999999955 7999999999866554 66688899999999999999999999
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
+++.|++|++|+-... +++++++++.+|...|.+++|++.|.+|++++.|+++
T Consensus 167 S~SYDnTIk~~~~~~d---------------------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDD---------------------------DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred EeccCCeEEEEeecCC---------------------------CCeeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 9999999999986432 4667889999999999999999999999999999999
Q ss_pred EEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 378 VVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 378 ~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
++|...+. ....|...++.+.|. ...|++++.|+.|++|.-...-.-..+.- .......|+..|++++|+|.
T Consensus 220 ~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l---~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 220 SIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL---LAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred EeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH---HHhhhcccccccceEEEcCC
Confidence 99986532 123355678889998 56899999999999997664211111100 00011234578999999994
Q ss_pred -CCEEEEeecCceEEEEEcC
Q 040987 458 -GGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 458 -~~~l~~~~~dg~i~i~d~~ 476 (762)
.++|++++.||.+++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 6789999999999999874
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-35 Score=264.90 Aligned_cols=286 Identities=19% Similarity=0.278 Sum_probs=256.0
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|...|+.+-|+|+-..+++++.|++|++||..+++ +...+++|.+
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~------------------------------~e~~LrGHt~ 151 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE------------------------------LERSLRGHTD 151 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh------------------------------hhhhhhcccc
Confidence 4566899999999999999999999999999999998774 4578999999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
.+.+++|+..|+++++++.|-.+.+||.++... ....+|...|.++.|-|.|.++++++.|.+|+.|++.++-++.++
T Consensus 152 sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 152 SVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred ceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 999999999999999999998899999987432 457788889999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC---
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD--- 509 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--- 509 (762)
.+|. ..|..+..+.||..+++++.|.++++|-+.+++....+. .| ..+|.+++|.|.
T Consensus 232 ~~h~----------ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR----~h------Eh~vEci~wap~~~~ 291 (406)
T KOG0295|consen 232 PGHS----------EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR----EH------EHPVECIAWAPESSY 291 (406)
T ss_pred cCch----------HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh----cc------ccceEEEEecccccC
Confidence 9988 799999999999999999999999999999885544432 22 667888888764
Q ss_pred ------------CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 510 ------------GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 510 ------------g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
++++++++ .|++|++||+.++.++.++ .+| .+.|..++|+|.|+||+++.+|+
T Consensus 292 ~~i~~at~~~~~~~~l~s~S---------rDktIk~wdv~tg~cL~tL-----~gh-dnwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 292 PSISEATGSTNGGQVLGSGS---------RDKTIKIWDVSTGMCLFTL-----VGH-DNWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred cchhhccCCCCCccEEEeec---------ccceEEEEeccCCeEEEEE-----ecc-cceeeeeEEcCCCeEEEEEecCC
Confidence 25778887 8999999999999988887 589 99999999999999999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
++++||+++.++.... ..|..-++++.|..+-.++++|+ |.++++|.-
T Consensus 357 tlrvwdl~~~~cmk~~-----------~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 357 TLRVWDLKNLQCMKTL-----------EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cEEEEEeccceeeecc-----------CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999998877766 37889999999999999999999 999999964
No 38
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=265.85 Aligned_cols=495 Identities=11% Similarity=0.124 Sum_probs=353.1
Q ss_pred eeEEEEecCCCeEEEEecCC--cceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEE
Q 040987 43 SFIFAVARSSGLCRTAEYPA--VNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTV 120 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~--~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v 120 (762)
+..+|++-.||.|.+|++.. -+...+.|+++.-..+++|++.++++-++.+|.|.-||+.+++++..++...+.|+++
T Consensus 37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsi 116 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSI 116 (691)
T ss_pred CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEE
Confidence 45699999999999999986 4455678887664445999987777777779999999999999999999999999999
Q ss_pred EEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccC
Q 040987 121 IVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETT 200 (762)
Q Consensus 121 ~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (762)
+.+|.+ ..++.|++||.+...+...++.....
T Consensus 117 ai~p~~-------~~l~IgcddGvl~~~s~~p~~I~~~r----------------------------------------- 148 (691)
T KOG2048|consen 117 AINPEN-------TILAIGCDDGVLYDFSIGPDKITYKR----------------------------------------- 148 (691)
T ss_pred EeCCcc-------ceEEeecCCceEEEEecCCceEEEEe-----------------------------------------
Confidence 999999 67889999997777777665543321
Q ss_pred cCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhhe---eeee
Q 040987 201 KSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVV---MRKI 276 (762)
Q Consensus 201 ~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~---~~~~ 276 (762)
.+...++.+.++.|+|++..|++| .||.|++||...+...... +...
T Consensus 149 -----------------------------~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 149 -----------------------------SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred -----------------------------ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 122235778899999999988855 7999999999988764100 0011
Q ss_pred eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
......-|.++.|-.++ .+++|...|+|.+||...+ .+++.+..|...|
T Consensus 200 ~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g------------------------------TLiqS~~~h~adV 248 (691)
T KOG2048|consen 200 SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG------------------------------TLIQSHSCHDADV 248 (691)
T ss_pred ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc------------------------------chhhhhhhhhcce
Confidence 11233457788887666 6899999999999998665 3456777899999
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.+++..+++.++++++.|+.|..+...++.. .....|...+.+++..++ .+++|+.|..+.+-.....+
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~---- 322 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK---- 322 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccC----
Confidence 9999999999999999999999998877643 235567788999998877 88888889888876554311
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc------eeeEEeecccccCCCCcceeEEEEE
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG------ISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
+..|..+...+. + ..+...|.. +|+.--....+.+|.+.+... ...+....+. ...|.+.+
T Consensus 323 ~~~h~~~~~~p~---~--~~v~~a~~~-~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~-------~~nIs~~a 389 (691)
T KOG2048|consen 323 NMDHRQKNLFPA---S--DRVSVAPEN-RLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE-------KENISCAA 389 (691)
T ss_pred chhhhccccccc---c--ceeecCccc-eEEEEeccccccceeccCcccccccChhhheeeecCC-------ccceeeec
Confidence 111111000000 0 112233333 344434455577777765411 1111111111 45689999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWIC 584 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~ 584 (762)
.||+|++++.+.. ...++|.+.....+........... ......+.|+-|++.++.++ .+..+.++++
T Consensus 390 iSPdg~~Ia~st~----------~~~~iy~L~~~~~vk~~~v~~~~~~-~~~a~~i~ftid~~k~~~~s~~~~~le~~el 458 (691)
T KOG2048|consen 390 ISPDGNLIAISTV----------SRTKIYRLQPDPNVKVINVDDVPLA-LLDASAISFTIDKNKLFLVSKNIFSLEEFEL 458 (691)
T ss_pred cCCCCCEEEEeec----------cceEEEEeccCcceeEEEeccchhh-hccceeeEEEecCceEEEEecccceeEEEEe
Confidence 9999999999853 4788888876443222211111111 33567788898988888877 6677888888
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC-CCC
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG-SSE 662 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~-dg~ 662 (762)
.+........ ...+.....|+.+..||||+|||+.+ .|.|.+|++++++.......-...++.++|+| +-.
T Consensus 459 ~~ps~kel~~-------~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~ 531 (691)
T KOG2048|consen 459 ETPSFKELKS-------IQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRN 531 (691)
T ss_pred cCcchhhhhc-------cccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccC
Confidence 7665544332 00113467899999999999999988 99999999999876655534457799999995 667
Q ss_pred EEEEEEcCCCCeEEEEECCCCc
Q 040987 663 YLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 663 ~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
.|+.+..++. |.-||++...
T Consensus 532 ~lvvats~nQ--v~efdi~~~~ 551 (691)
T KOG2048|consen 532 RLVVATSNNQ--VFEFDIEARN 551 (691)
T ss_pred cEEEEecCCe--EEEEecchhh
Confidence 8888888887 9999995443
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=273.82 Aligned_cols=283 Identities=18% Similarity=0.312 Sum_probs=248.6
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
-...|..+.|.|+|+.|++|+..|.+.+|+..+- . ....++.|...|.++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-n-----------------------------FEtilQaHDs~Vr~m 144 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-N-----------------------------FETILQAHDSPVRTM 144 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee-e-----------------------------HHHHhhhhcccceeE
Confidence 3458999999999999999999999999997321 1 124567899999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCC
Q 040987 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
.|+++|.++++|+.+|.|++|+...........+. ..|.+++|||+...+++++.||.|+|||....+..+.+.+|.
T Consensus 145 ~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg-- 222 (464)
T KOG0284|consen 145 KWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG-- 222 (464)
T ss_pred EEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC--
Confidence 99999999999999999999998877766555554 899999999999999999999999999999988888888887
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
-.|.+++|+|...+|++++.|+.|++||.+++.++.++... ...|..+.|+|++++|++++
T Consensus 223 --------wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H----------KntVl~~~f~~n~N~Llt~s- 283 (464)
T KOG0284|consen 223 --------WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH----------KNTVLAVKFNPNGNWLLTGS- 283 (464)
T ss_pred --------CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc----------cceEEEEEEcCCCCeeEEcc-
Confidence 67899999999999999999999999999999988776543 77899999999999999999
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
.|..++++|+++-+.++.+ ++| ...+++++|+| ...+|.+|+.||.|..|.+...+.+..+
T Consensus 284 --------kD~~~kv~DiR~mkEl~~~-----r~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i---- 345 (464)
T KOG0284|consen 284 --------KDQSCKVFDIRTMKELFTY-----RGH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI---- 345 (464)
T ss_pred --------CCceEEEEehhHhHHHHHh-----hcc-hhhheeeccccccccceeeccCCCceEEEeccccccccCC----
Confidence 8999999999976665554 689 99999999999 5668889999999999999855554444
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
..+|...|.+++|+|=|.+|++|+ |.++++|.-.
T Consensus 346 ------~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 346 ------PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ------CcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 357999999999999999999999 9999999754
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-35 Score=268.85 Aligned_cols=293 Identities=21% Similarity=0.306 Sum_probs=238.8
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
+++..|.+.|.-+.||++|++||+++.|.+..+|.+.....+ +..+++.+|..
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~---------------------------kl~~tlvgh~~ 270 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF---------------------------KLKKTLVGHSQ 270 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce---------------------------eeeeeeecccC
Confidence 677899999999999999999999999999999997554433 35688999999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC--CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI--GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+|..+.||||.++|++++.+..+.+||+.+|.......+ ...+.+++|.|||..+++|+.|+.+..||++ |......
T Consensus 271 ~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred ceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence 999999999999999999999999999999998765544 4789999999999999999999999999998 4555555
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
++... ..|.++++++||+++++.+.|..|++|+..+......+.. ..+++++.+|.|+++
T Consensus 350 ~gvr~---------~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-----------~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 350 EGVRD---------PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE-----------EQPITSFSISKDGKL 409 (519)
T ss_pred ccccc---------ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc-----------cCceeEEEEcCCCcE
Confidence 55442 4689999999999999999999999999877544432222 456788888888887
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
+.+.- .+..+.+||++....+... .|| . .+.+++-.+..|
T Consensus 410 ~LvnL---------~~qei~LWDl~e~~lv~kY-----~Gh-k----------q~~fiIrSCFgg--------------- 449 (519)
T KOG0293|consen 410 ALVNL---------QDQEIHLWDLEENKLVRKY-----FGH-K----------QGHFIIRSCFGG--------------- 449 (519)
T ss_pred EEEEc---------ccCeeEEeecchhhHHHHh-----hcc-c----------ccceEEEeccCC---------------
Confidence 77776 6677888888755444332 344 1 233333222111
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC-CCCEEEEEEcC
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG-SSEYLVATSWG 670 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~-dg~~l~s~~~d 670 (762)
.+..++|+|+ |+.|+||+..+|+++.++.||...|++++|+| |..++|+||+|
T Consensus 450 -------------------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD 504 (519)
T KOG0293|consen 450 -------------------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD 504 (519)
T ss_pred -------------------------CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence 2557999999 99999999999999999999999999999999 67889999999
Q ss_pred CCCeEEEEECCC
Q 040987 671 SKPQLSVWNMSK 682 (762)
Q Consensus 671 ~~~~v~vwd~~~ 682 (762)
|+ |+||....
T Consensus 505 gt--IRIWg~~~ 514 (519)
T KOG0293|consen 505 GT--IRIWGPSD 514 (519)
T ss_pred Ce--EEEecCCc
Confidence 99 99998764
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4e-34 Score=253.35 Aligned_cols=289 Identities=15% Similarity=0.239 Sum_probs=249.3
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
.++..+.+|.+.|+.+.|+|+|..|++++.|..|.+|++..... ..+..|.+.|..+.|.+|++.+++++.|.+++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 45667889999999999999999999999999999999765443 3466899999999999999999999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
|+++|+.++.+++|. +-+.++.-+.-|. ++.+++.|+++++||+++...+..+.. ...
T Consensus 118 D~~tG~~~rk~k~h~----------~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-----------kyq 176 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHT----------SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-----------KYQ 176 (338)
T ss_pred ecccceeeehhcccc----------ceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-----------cee
Confidence 999999999999988 6677777444443 567788999999999998877666543 566
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
++++.|..++..+.+|+ -|+.|++||++.+...+.+ .|| ...|+.+..+|+|.++.+-+.|.+++
T Consensus 177 ltAv~f~d~s~qv~sgg---------Idn~ikvWd~r~~d~~~~l-----sGh-~DtIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISGG---------IDNDIKVWDLRKNDGLYTL-----SGH-ADTITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred EEEEEecccccceeecc---------ccCceeeeccccCcceEEe-----ecc-cCceeeEEeccCCCccccccccceEE
Confidence 99999999999999998 7899999999999888776 689 99999999999999999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccC----CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEE
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYK----KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNM 655 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~ 655 (762)
+||++....... |.....+| ......++|||+++.+..|+ |..+++||..+...+..+.||.+.|.++
T Consensus 242 vwd~rp~~p~~R-------~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~ 314 (338)
T KOG0265|consen 242 VWDVRPFAPSQR-------CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV 314 (338)
T ss_pred EEEecccCCCCc-------eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence 999976543222 22333333 23445789999999999998 9999999999999999999999999999
Q ss_pred EEeCCCCEEEEEEcCCCCeEEE
Q 040987 656 SFVGSSEYLVATSWGSKPQLSV 677 (762)
Q Consensus 656 ~~s~dg~~l~s~~~d~~~~v~v 677 (762)
.|+|...+|.+++.|++ |++
T Consensus 315 ~Fhp~e~iils~~sdk~--i~l 334 (338)
T KOG0265|consen 315 DFHPTEPIILSCSSDKT--IYL 334 (338)
T ss_pred eecCCCcEEEEeccCce--eEe
Confidence 99999999999999998 765
No 42
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.6e-35 Score=291.46 Aligned_cols=281 Identities=13% Similarity=0.221 Sum_probs=240.4
Q ss_pred EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCC
Q 040987 106 QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPP 185 (762)
Q Consensus 106 ~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 185 (762)
+..++..-...++|..|++|+ .+||-|..|..|++|.+... .++.++....+..+
T Consensus 370 c~YT~~nt~~~v~ca~fSdds-------smlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~l~~~----------------- 424 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDS-------SMLACGFVDSSVRVWSLTPK-KLKKLKDASDLSNI----------------- 424 (707)
T ss_pred EEEEEEEcCCcceeEeecCCc-------chhhccccccEEEEEecchh-hhccccchhhhccc-----------------
Confidence 445555556779999999999 78899999999999999864 33334332211111
Q ss_pred ceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEcc
Q 040987 186 KLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVP 264 (762)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~ 264 (762)
-+.+.|-.+.+.|..++... ..+.+|.++|....|+||.++|+++ .|+++++|.+.
T Consensus 425 ----------------------d~~sad~~~~~~D~~~~~~~-~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~ 481 (707)
T KOG0263|consen 425 ----------------------DTESADVDVDMLDDDSSGTS-RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD 481 (707)
T ss_pred ----------------------cccccchhhhhccccCCcee-EEeecCCCceeeeeecccccceeeccCCcceeeeecc
Confidence 12344445666666666555 5689999999999999999999955 78999999999
Q ss_pred CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccc
Q 040987 265 DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD 344 (762)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (762)
+..+. -...+|..+|..+.|+|.|-++|+++.|++-++|..... .
T Consensus 482 t~s~~-----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~------------------------------~ 526 (707)
T KOG0263|consen 482 TWSCL-----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN------------------------------K 526 (707)
T ss_pred cceeE-----EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC------------------------------C
Confidence 99876 667799999999999999999999999999999997554 4
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+.+.+.+|...|.|+.|+|+..++++|+.|.++++||+.+|..+ .+.+|.++|.+++|||+|++|++|+.|+.|.+||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 56889999999999999999999999999999999999999885 46789999999999999999999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
.++..+..+.+|. +.|.++.|+.||..||+++.|++|++||+....
T Consensus 607 ~~~~~v~~l~~Ht----------~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 607 ANGSLVKQLKGHT----------GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCCcchhhhhccc----------CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999997 899999999999999999999999999987543
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-35 Score=264.84 Aligned_cols=288 Identities=18% Similarity=0.281 Sum_probs=260.7
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+...+.+|...|+.+.|+|+-..++++++|++|++||..+++.. .+.+|...+..++|+..|+++++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 45677889999999999999999999999999999999999985 57888889999999999999999999999999999
Q ss_pred CC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 424 PS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 424 ~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
.+ .++++.+.+|. ..|.+++|-|.|.++++++.|.+|+.|++.++-.+..+... ...|.
T Consensus 180 ~~~~~c~ks~~gh~----------h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h----------~ewvr 239 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHE----------HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH----------SEWVR 239 (406)
T ss_pred HHHHHHHHHhcCcc----------cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc----------hHhEE
Confidence 87 66777777777 78899999999999999999999999999999888877554 66899
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC---------------C
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN---------------R 567 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd---------------~ 567 (762)
.++.+.||..+|+++ .|.++++|-..+.++...+ ..| .-.|.+++|-|. +
T Consensus 240 ~v~v~~DGti~As~s---------~dqtl~vW~~~t~~~k~~l-----R~h-Eh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCS---------NDQTLRVWVVATKQCKAEL-----REH-EHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred EEEecCCeeEEEecC---------CCceEEEEEeccchhhhhh-----hcc-ccceEEEEecccccCcchhhccCCCCCc
Confidence 999999999999999 8999999999999776665 467 779999999764 3
Q ss_pred CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec
Q 040987 568 RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 568 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~ 646 (762)
.++++++.|++|++||+.++.++..+ .+|..+|..++|+|.|+||+++. |+++++||++++++...+.
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL-----------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTL-----------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEE-----------ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 58999999999999999999766554 58999999999999999999997 9999999999999999999
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
.|..-++++.|..+-.++++|+-|.+ +++|.-
T Consensus 374 ah~hfvt~lDfh~~~p~VvTGsVdqt--~KvwEc 405 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKTAPYVVTGSVDQT--VKVWEC 405 (406)
T ss_pred CCcceeEEEecCCCCceEEeccccce--eeeeec
Confidence 99999999999999999999999998 999963
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=262.66 Aligned_cols=303 Identities=19% Similarity=0.301 Sum_probs=260.0
Q ss_pred EecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeE
Q 040987 58 AEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 58 ~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
|..+-.....+.||.+.|.| +++.|-.+++++|+ |++|.|||+++|++..++.||-..|..+++|+-- .||
T Consensus 137 WHapwKl~rVi~gHlgWVr~-vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-------pYl 208 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRS-VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-------PYL 208 (460)
T ss_pred ccCcceehhhhhhccceEEE-EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-------ceE
Confidence 44444555678999999998 99999999999999 8999999999999999999999999999999999 799
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++++.|+.|+.||++..+.+
T Consensus 209 Fs~gedk~VKCwDLe~nkvI------------------------------------------------------------ 228 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVI------------------------------------------------------------ 228 (460)
T ss_pred EEecCCCeeEEEechhhhhH------------------------------------------------------------
Confidence 99999999999998764433
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEE
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIV 296 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 296 (762)
+-..+|-..|.|++.+|.-..|
T Consensus 229 ----------------------------------------------------------R~YhGHlS~V~~L~lhPTldvl 250 (460)
T KOG0285|consen 229 ----------------------------------------------------------RHYHGHLSGVYCLDLHPTLDVL 250 (460)
T ss_pred ----------------------------------------------------------HHhccccceeEEEeccccceeE
Confidence 3345788899999999999999
Q ss_pred EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCe
Q 040987 297 AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGV 376 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 376 (762)
++|+.|.+++|||+++.. .+..+.||...|..+.+.|-...+++++.|++
T Consensus 251 ~t~grDst~RvWDiRtr~------------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 251 VTGGRDSTIRVWDIRTRA------------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred EecCCcceEEEeeecccc------------------------------eEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 999999999999998774 45789999999999999998889999999999
Q ss_pred EEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 377 LVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 377 i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
|++||+..|+.. .+..|...+.+++.+|....+++++.| .|+-|++..|..+..+.+|. ..+.+++.+
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~----------~iintl~~n 369 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN----------AIINTLSVN 369 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc----------ceeeeeeec
Confidence 999999999875 577888899999999999999988655 79999999999998898887 788999998
Q ss_pred CCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
.|+ .+++|+++|.+.+||.+++......+...+.- .-.....|.+.+|...|..|+++. .|.+|++|.
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG--Sl~sEagI~as~fDktg~rlit~e---------adKtIk~~k 437 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG--SLESEAGIFASCFDKTGSRLITGE---------ADKTIKMYK 437 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCcccccccccccCC--ccccccceeEEeecccCceEEecc---------CCcceEEEe
Confidence 886 68889999999999999987655543221110 001156789999999999999998 889999998
Q ss_pred ecCC
Q 040987 536 SGTQ 539 (762)
Q Consensus 536 ~~~~ 539 (762)
-+..
T Consensus 438 eDe~ 441 (460)
T KOG0285|consen 438 EDEH 441 (460)
T ss_pred cccc
Confidence 7654
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.3e-35 Score=270.03 Aligned_cols=281 Identities=18% Similarity=0.277 Sum_probs=244.8
Q ss_pred CCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 235 MKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
...|..+.|.|+|+.|+++ ..|.+.+|+...-... .++..|...|.++.|++++.++++|+.+|.|++|+..-+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE-----tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE-----TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH-----HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 4578999999999998855 7899999999776665 778899999999999999999999999999999986432
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccc-cceeEEEEecCCCEEEEEecCCeEEEEecCCCce-eccC
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP-SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLP 391 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~ 391 (762)
.++.++.|. ..|++++|+|+...+++++.||+|+|||....+. ..+.
T Consensus 171 -------------------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 171 -------------------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred -------------------------------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 234455554 8999999999999999999999999999988776 4568
Q ss_pred CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEE
Q 040987 392 RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIH 471 (762)
Q Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 471 (762)
+|+-.|.++.|+|...++++++.|+.|++||.+++.++.++.+|+ ..|..+.|+|++++|++++.|..++
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK----------ntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK----------NTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhcc----------ceEEEEEEcCCCCeeEEccCCceEE
Confidence 888999999999999999999999999999999999999999988 8999999999999999999999999
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
+||+++.+.+..+.. | ...+++++|+|-. .+|.+++ .|+.|..|.+...+.+..+.
T Consensus 290 v~DiR~mkEl~~~r~----H------kkdv~~~~WhP~~~~lftsgg---------~Dgsvvh~~v~~~~p~~~i~---- 346 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRG----H------KKDVTSLTWHPLNESLFTSGG---------SDGSVVHWVVGLEEPLGEIP---- 346 (464)
T ss_pred EEehhHhHHHHHhhc----c------hhhheeeccccccccceeecc---------CCCceEEEeccccccccCCC----
Confidence 999997666555432 2 6779999999954 4666666 89999999999666555543
Q ss_pred cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 551 EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 551 ~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
.+| ...|.+++|+|=|.+|++|+.|.++++|.-.
T Consensus 347 ~AH-d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 347 PAH-DGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccc-ccceeeeeccccceeEeecCCCcceeeeccC
Confidence 578 9999999999999999999999999999754
No 46
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.7e-35 Score=292.26 Aligned_cols=283 Identities=22% Similarity=0.295 Sum_probs=239.9
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..++..-...++|..|++|+..||.|-.|..|++|.+...+...+..... ...+=+.+.|-.+.+.|...
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~----------l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASD----------LSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhh----------hccccccccchhhhhccccC
Confidence 34444455678999999999999999999999999998665443332211 11122233444567777777
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
....+++.+|. ++|....|+|+.++|+++++|+++++|.+.+...+.... +| ..+|.++.
T Consensus 441 ~~~~~~L~GH~----------GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~----GH------~~PVwdV~ 500 (707)
T KOG0263|consen 441 SGTSRTLYGHS----------GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK----GH------LAPVWDVQ 500 (707)
T ss_pred CceeEEeecCC----------CceeeeeecccccceeeccCCcceeeeecccceeEEEec----CC------CcceeeEE
Confidence 77788899988 899999999999999999999999999999876554433 33 78899999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|+|.|-|+|+++ .|++-++|........+.+ .+| .+.|.|+.|+|+..|+++||.|.++|+||+.
T Consensus 501 F~P~GyYFatas---------~D~tArLWs~d~~~PlRif-----agh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~ 565 (707)
T KOG0263|consen 501 FAPRGYYFATAS---------HDQTARLWSTDHNKPLRIF-----AGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDVS 565 (707)
T ss_pred ecCCceEEEecC---------CCceeeeeecccCCchhhh-----ccc-ccccceEEECCcccccccCCCCceEEEEEcC
Confidence 999999999999 8999999999987665544 789 9999999999999999999999999999999
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEE
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l 664 (762)
+|..++.+ .+|.++|++++|||+|++||+|+ |+.|.+||+.+++++..+.+|.+.|.++.||.||..|
T Consensus 566 ~G~~VRiF-----------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vL 634 (707)
T KOG0263|consen 566 TGNSVRIF-----------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVL 634 (707)
T ss_pred CCcEEEEe-----------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEE
Confidence 99877665 58999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEECCCCcee
Q 040987 665 VATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 665 ~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
|++|.|.. |++||+..-...
T Consensus 635 asgg~Dns--V~lWD~~~~~~~ 654 (707)
T KOG0263|consen 635 ASGGADNS--VRLWDLTKVIEL 654 (707)
T ss_pred EecCCCCe--EEEEEchhhccc
Confidence 99999998 999998764433
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=269.51 Aligned_cols=490 Identities=13% Similarity=0.185 Sum_probs=347.8
Q ss_pred eeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCc
Q 040987 108 SSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPK 186 (762)
Q Consensus 108 ~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~ 186 (762)
..|+..+..|..++|+|.. .++.++-..|.|++||.+-+.++..|..|. ||..+.|.. ..|
T Consensus 3 tkfEskSsRvKglsFHP~r-------PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~----------~qp- 64 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKR-------PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP----------TQP- 64 (1202)
T ss_pred chhhcccccccceecCCCC-------CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC----------CCC-
Confidence 3466678899999999999 588899999999999999999999999998 999998721 111
Q ss_pred eEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccC
Q 040987 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPD 265 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~ 265 (762)
+ | ++|+.|-.|++|+.++.+++ -.+.+|-..|+.+.|++.-.+|.+ ++|.+|+||+..+
T Consensus 65 -l-F-----------------VSGGDDykIkVWnYk~rrcl-ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 65 -L-F-----------------VSGGDDYKIKVWNYKTRRCL-FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred -e-E-----------------EecCCccEEEEEecccceeh-hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence 1 1 77999999999999999999 788999999999999999999985 5789999999999
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADL 345 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (762)
+++. ..+++|...|.|..|+|....++++|-|.+|+|||+.+-+.-....... ...+........+....+.-.
T Consensus 125 r~~i-----avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~-e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 125 RKCI-----AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSL-EDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred CceE-----EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCc-hhhhhccccchhhcCCcCeee
Confidence 9987 8999999999999999999999999999999999986643221111100 000000011112223334455
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
...+.||...|+.++|+|.-..|++|++|..|++|.....+. -...+|.++|.++-|+|...++++.++|+.|++||
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 678899999999999999999999999999999999876543 35778999999999999999999999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+...+.++++.... +..+.++-+|..++++.| .|+-+.+|.++...+ .
T Consensus 279 m~kRt~v~tfrren----------dRFW~laahP~lNLfAAg-HDsGm~VFkleRErp--------------------a- 326 (1202)
T KOG0292|consen 279 MTKRTSVQTFRREN----------DRFWILAAHPELNLFAAG-HDSGMIVFKLERERP--------------------A- 326 (1202)
T ss_pred cccccceeeeeccC----------CeEEEEEecCCcceeeee-cCCceEEEEEcccCc--------------------e-
Confidence 99999999987655 678999999999877776 555577777753321 1
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eC-CCcEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SY-GGDFK 580 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~-dg~i~ 580 (762)
.+. +++.|... .+..|+.+|+.+.+.....+.. ..+....+..++.++|..+.+..+ .. .+...
T Consensus 327 -~~v--~~n~LfYv----------kd~~i~~~d~~t~~d~~v~~lr-~~g~~~~~~~smsYNpae~~vlics~~~n~~y~ 392 (1202)
T KOG0292|consen 327 -YAV--NGNGLFYV----------KDRFIRSYDLRTQKDTAVASLR-RPGTLWQPPRSLSYNPAENAVLICSNLDNGEYE 392 (1202)
T ss_pred -EEE--cCCEEEEE----------ccceEEeeeccccccceeEecc-CCCcccCCcceeeeccccCeEEEEeccCCCeEE
Confidence 122 23333333 5679999999986554333221 111113578889999976654444 32 34445
Q ss_pred EEEcccccccccc-----c----CCceeeeee---cc--cC-------CC----------CeEEEEEcCCCcEEEEEcCC
Q 040987 581 VWICNDELQQKDL-----Q----SSGWSCHAV---GS--YK-------KK----------AMTAAAFSADGSVLAVAAET 629 (762)
Q Consensus 581 iwd~~~~~~~~~~-----~----~~~~~~~~~---~~--~~-------~~----------~i~~~~~s~dg~~la~~~d~ 629 (762)
++.+......... + ...|..... +. .+ .. .+..+-+...|.+| ..+..
T Consensus 393 L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~ll-l~~~~ 471 (1202)
T KOG0292|consen 393 LVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLL-LRSPD 471 (1202)
T ss_pred EEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEE-EEcCC
Confidence 5554332111100 0 001110000 00 00 00 11122222233222 22346
Q ss_pred eEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 630 VITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.|.+||++..+.+..+. ...+.-+.||+|..+++--+... |.+.+.+ .+++.++.....
T Consensus 472 ~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~Kh~---i~i~~kk-L~l~~sihEtir 530 (1202)
T KOG0292|consen 472 SVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSKHT---ITIADKK-LELLCSIHETIR 530 (1202)
T ss_pred eEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcccce---EEEEecc-hhheecchheeE
Confidence 78899999888888885 56799999999999998887754 8888743 445555544444
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-33 Score=258.77 Aligned_cols=293 Identities=15% Similarity=0.212 Sum_probs=243.9
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+..|...|+-+.||++|+|||++ .|.+..+|++...... .+...+.+|..+|..+.||||.++|++++.|..+.+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~--kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF--KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce--eeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 4667799999999999999999955 7899999998766553 566788899999999999999999999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK 387 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~ 387 (762)
||+.++..+.. .-.+|...+.+++|.|||..+++|+.|+++..||++....
T Consensus 296 wDv~tgd~~~~-----------------------------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~ 346 (519)
T KOG0293|consen 296 WDVDTGDLRHL-----------------------------YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL 346 (519)
T ss_pred ccCCcchhhhh-----------------------------cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh
Confidence 99988754321 1123457899999999999999999999999999987665
Q ss_pred eccCCCC-CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 388 KFLPRIG-SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 388 ~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
....... ..|.+++.++||+++++.+.|..|++|+..+......+..+ ..++++.+|.|++++++.-.
T Consensus 347 ~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-----------~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 347 GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-----------QPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-----------CceeEEEEcCCCcEEEEEcc
Confidence 3333332 46999999999999999999999999999876555444443 58899999999999999999
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
+..+++||++....+.......+ ...+-.-+|-- +..++++|+ +|+.|+||+..+++.+..+
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq--------~~fiIrSCFgg~~~~fiaSGS---------ED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQ--------GHFIIRSCFGGGNDKFIASGS---------EDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccc--------cceEEEeccCCCCcceEEecC---------CCceEEEEEccCCceeEee
Confidence 99999999997776666555444 33455556654 458899998 9999999999999988877
Q ss_pred EEEeecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEccc
Q 040987 546 STIVYEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~ 586 (762)
.|| ...|++++|+|. -.++|++++||+|+||-...
T Consensus 479 -----sGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 -----SGH-SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -----cCC-cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 689 999999999994 56899999999999998753
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-32 Score=239.55 Aligned_cols=293 Identities=17% Similarity=0.212 Sum_probs=243.1
Q ss_pred eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC
Q 040987 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG 143 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~ 143 (762)
.+.++||+.+++. +.++.+|.+|.+++ |.++.||-.-+|+.+.++.||.+.|+|++..-+. ++|+||+.|.
T Consensus 3 pi~l~GHERplTq-iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-------~~liTGSAD~ 74 (327)
T KOG0643|consen 3 PILLQGHERPLTQ-IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-------KHLITGSADQ 74 (327)
T ss_pred ccccccCccccce-EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-------ceeeeccccc
Confidence 4678999999997 99999999999999 8999999998999999999999999999999999 7888999999
Q ss_pred eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCC
Q 040987 144 TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTE 223 (762)
Q Consensus 144 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~ 223 (762)
++++||+.+|+++..++..
T Consensus 75 t~kLWDv~tGk~la~~k~~------------------------------------------------------------- 93 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTN------------------------------------------------------------- 93 (327)
T ss_pred eeEEEEcCCCcEEEEeecC-------------------------------------------------------------
Confidence 9999999999999887643
Q ss_pred ccccceeeeccCCCceEEEECCCCCEEEEEe------CCeEEEEEccCchhh--hheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 224 SRLAGGVTLAEMKEPQVITISSSGKYFGIRK------QRKLLIWKVPDVEAE--RVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 224 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~------~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
..|..+.|+++|++++++. .+.|.++|++..... ...+......+...++.+-|+|-+++
T Consensus 94 ------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 94 ------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred ------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 3455668889999887653 467999998844311 11222344466789999999999999
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
|++|..||.|.+||+++++.+. ..-+.|...|+.+.+++|..++++++.|.
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v-----------------------------~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELV-----------------------------DSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred EEEecCCCcEEEEEcccCceee-----------------------------echhhhccccccccccCCcceEEecccCc
Confidence 9999999999999998876443 45566888999999999999999999999
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcE--------------EEEEcCCceEEEEEccCCCCCCC
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQV--------------HLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i--------------~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
+-++||..+-+.+.......++.+.+++|-...++.++..... +.|++-..+.+..+++|-
T Consensus 213 takl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF----- 287 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF----- 287 (327)
T ss_pred cceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc-----
Confidence 9999999999988877888899999999988777766543221 222222234556677777
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 477 (762)
++|.+++|+|+|+..++|++||.|++.-...
T Consensus 288 -----GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 -----GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred -----cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 8899999999999999999999999986643
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=243.28 Aligned_cols=294 Identities=13% Similarity=0.141 Sum_probs=249.7
Q ss_pred eeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+.+|.+.|..+.|+|+|..+|+ |.|..|.+|+...... ....+.+|.+.|..+.|.+|++.+++++.|.+|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----ceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 356789999999999999999995 5899999999765442 22456699999999999999999999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCc
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~ 386 (762)
||+++++ .++.+++|.+-|+.+.-+.-| .++.+++.|+++++||+++.+
T Consensus 117 wD~~tG~------------------------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 117 WDAETGK------------------------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred Eecccce------------------------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 9998885 446888999999988854444 456788899999999999998
Q ss_pred eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 387 KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
..........++++.|..++..+.+|+-|+.|++||++.......+.||. ..|+.+..+|+|.++.+-+-
T Consensus 167 ~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~----------DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 167 AIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA----------DTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred hhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc----------CceeeEEeccCCCccccccc
Confidence 88888888899999999999999999999999999999999999999998 78899999999999999999
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
|.++++||++....-.+......++.. .........+|+|+++.+.+++ .|..+++||......++.+
T Consensus 237 d~tvrvwd~rp~~p~~R~v~if~g~~h--nfeknlL~cswsp~~~~i~ags---------~dr~vyvwd~~~r~~lykl- 304 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVKIFQGHIH--NFEKNLLKCSWSPNGTKITAGS---------ADRFVYVWDTTSRRILYKL- 304 (338)
T ss_pred cceEEEEEecccCCCCceEEEeecchh--hhhhhcceeeccCCCCcccccc---------ccceEEEeecccccEEEEc-
Confidence 999999999765443332211111110 0033356779999999999999 8899999999988888776
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
.|| .+.|+++.|+|...+|.+++.|++|++=+
T Consensus 305 ----pGh-~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 305 ----PGH-YGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ----CCc-ceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 689 99999999999999999999999988743
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.7e-33 Score=287.50 Aligned_cols=287 Identities=22% Similarity=0.307 Sum_probs=245.7
Q ss_pred eeecC-cccccCCceeecCCCEEEEEe-CCEEEEEEcccce--EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 67 MIRGG-RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 67 ~~~~h-~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~--~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
.+.+| ...|.+ +.||+||++|++++ ++.+++|+..+++ .++.+.+|...|.+++|+|++ .++++++.|
T Consensus 153 ~~~~~~~~sv~~-~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-------~~l~s~s~D 224 (456)
T KOG0266|consen 153 TLAGHECPSVTC-VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-------SYLLSGSDD 224 (456)
T ss_pred eecccccCceEE-EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-------cEEEEecCC
Confidence 33444 778887 99999999999998 8999999998888 888899999999999999999 799999999
Q ss_pred CeEEEEeC-CCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDF-SVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
++|+|||+ ..+.++++++
T Consensus 225 ~tiriwd~~~~~~~~~~l~------------------------------------------------------------- 243 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLK------------------------------------------------------------- 243 (456)
T ss_pred ceEEEeeccCCCeEEEEec-------------------------------------------------------------
Confidence 99999999 4456666554
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
+|...|++++|+|+|++++++ .|++|+|||+.++++. ..+.+|.+.|.+++|++++++|++++
T Consensus 244 -----------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~-----~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 244 -----------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV-----RKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred -----------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE-----EeeeccCCceEEEEECCCCCEEEEcC
Confidence 467778899999999888855 7999999999998766 88899999999999999999999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc--ceeEEEEecCCCEEEEEecCCeEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS--EVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
.|+.|++||+.++... +...+.++.. .++++.|+|++++++++..|++++
T Consensus 308 ~d~~i~vwd~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKL----------------------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred CCccEEEEECCCCcee----------------------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 9999999999877521 1234444444 499999999999999999999999
Q ss_pred EEecCCCcee-ccCCCCC---CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC-CCCCCCCCcccCceeeEE
Q 040987 379 VWQLDTGKKK-FLPRIGS---PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI-KLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 379 ~wd~~~~~~~-~~~~~~~---~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~ 453 (762)
+||+..+... ....|.. .+.+...++.++++++++.|+.|.+|+..++..+..+.+| . ..+..+.
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~----------~~~~~~~ 429 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK----------AAVSDLS 429 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCC----------Cceeccc
Confidence 9999988764 3444444 3445556889999999999999999999999999999998 4 6789999
Q ss_pred EeCCCCEEEEee--cCceEEEEEcC
Q 040987 454 FNHDGGLVALRA--ENYCIHFYSLL 476 (762)
Q Consensus 454 ~s~~~~~l~~~~--~dg~i~i~d~~ 476 (762)
++|..+++++++ .|+.+++|...
T Consensus 430 ~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 430 SHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999998 78899999753
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=260.33 Aligned_cols=270 Identities=17% Similarity=0.243 Sum_probs=230.3
Q ss_pred ccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCC
Q 040987 73 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFS 151 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~ 151 (762)
..|.| .--|...+++|. |++|+|||.++-.+++.|.||++.|.|+.|.. +.++|||.|.+|+|||++
T Consensus 198 kgVYC---lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---------rviisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 198 KGVYC---LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---------RVIVSGSSDSTVRVWDVN 265 (499)
T ss_pred CceEE---EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---------eEEEecCCCceEEEEecc
Confidence 44555 445667899999 89999999999999999999999999999865 678899999999999999
Q ss_pred CcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccc--c
Q 040987 152 VPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLA--G 228 (762)
Q Consensus 152 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~--~ 228 (762)
+|++++++-.|. .|..+.|.+ +.. ++++.|.++.+||+.....+ +
T Consensus 266 tge~l~tlihHceaVLhlrf~n---------g~m-----------------------vtcSkDrsiaVWdm~sps~it~r 313 (499)
T KOG0281|consen 266 TGEPLNTLIHHCEAVLHLRFSN---------GYM-----------------------VTCSKDRSIAVWDMASPTDITLR 313 (499)
T ss_pred CCchhhHHhhhcceeEEEEEeC---------CEE-----------------------EEecCCceeEEEeccCchHHHHH
Confidence 999999998887 777776621 111 67899999999999876644 5
Q ss_pred eeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+.+|...|+.+.|+. ++++ +++|.+|++|+..+.++. +.+.+|..+|-|+.+ .++++++|+.|.+|++
T Consensus 314 rVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efv-----Rtl~gHkRGIAClQY--r~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFV-----RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRL 384 (499)
T ss_pred HHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeee-----hhhhcccccceehhc--cCeEEEecCCCceEEE
Confidence 67889999999999964 5887 558999999999999987 888999999999988 6899999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK 387 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~ 387 (762)
||++.+ .+++.++||..-|.++.| |.+.+++|+.||+|++||+..+..
T Consensus 385 wdi~~G------------------------------~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 385 WDIECG------------------------------ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred Eecccc------------------------------HHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccC
Confidence 999777 567899999999999999 567999999999999999987654
Q ss_pred e----------ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 388 K----------FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 388 ~----------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
. .+..|.+.|..+.| |...+++++.|.+|.|||..++..-
T Consensus 433 pra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 433 PRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred CcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 2 34567788999988 4578999999999999999876443
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.3e-32 Score=270.31 Aligned_cols=283 Identities=24% Similarity=0.389 Sum_probs=246.9
Q ss_pred eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeE
Q 040987 67 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTI 145 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i 145 (762)
.+.+|.+.|.+ ++|+|++++|++++ +|.|.+||+.+++....+.+|...+..+.|+|++ .++++++.|+.|
T Consensus 4 ~~~~h~~~i~~-~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~~~~~~i 75 (289)
T cd00200 4 TLKGHTGGVTC-VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-------TYLASGSSDKTI 75 (289)
T ss_pred HhcccCCCEEE-EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-------CEEEEEcCCCeE
Confidence 46799999997 99999999999999 7999999999999999999999999999999999 688899999999
Q ss_pred EEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 146 KYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
++||+.+++.+..+.
T Consensus 76 ~i~~~~~~~~~~~~~----------------------------------------------------------------- 90 (289)
T cd00200 76 RLWDLETGECVRTLT----------------------------------------------------------------- 90 (289)
T ss_pred EEEEcCcccceEEEe-----------------------------------------------------------------
Confidence 999998775544332
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEEe-CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIRK-QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
.|...+.++.|+|++++++++. ++.+.+||+.+++.. .....|...+.+++|+|+++++++++.++.
T Consensus 91 -------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 91 -------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-----TTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred -------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-----EEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 2445678889999999998776 999999999976643 445578889999999999999998888999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
|++||+..++ ....+..|...+.++.|+|+++.+++++.++.+++||+.+
T Consensus 159 i~i~d~~~~~------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 159 IKLWDLRTGK------------------------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred EEEEEccccc------------------------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 9999986543 3356667888999999999999999999999999999998
Q ss_pred CceeccC-CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE
Q 040987 385 GKKKFLP-RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL 463 (762)
Q Consensus 385 ~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 463 (762)
++..... .+...+.++.|+|++.++++++.++.+++|++.+++....+..+. ..+.+++|+|+++++++
T Consensus 209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT----------NSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC----------CcEEEEEECCCCCEEEE
Confidence 8776544 677799999999998888888779999999999988888888665 68899999999999999
Q ss_pred eecCceEEEEE
Q 040987 464 RAENYCIHFYS 474 (762)
Q Consensus 464 ~~~dg~i~i~d 474 (762)
++.|+.+++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.2e-34 Score=268.04 Aligned_cols=294 Identities=16% Similarity=0.256 Sum_probs=251.2
Q ss_pred eeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 272 VMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
.......+|...|.++.|.| .+.+|++++.|+.|+||++... ..+++++.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-----------------------------~~~lrtf~ 255 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-----------------------------RRCLRTFK 255 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-----------------------------cceehhhh
Confidence 33466779999999999999 8999999999999999998652 35779999
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
+|..+|.+++|+.+|..+++++.|+.|++||+++|++......+..++++.|.||+ +.+++|+.|+.|+.||+++++.+
T Consensus 256 gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 256 GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence 99999999999999999999999999999999999999888888999999999998 88999999999999999999988
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+.+..|- +.|..+.|-++|+++++.++|+.+++|+...+-.+..+.... .....++..+|+
T Consensus 336 qeYd~hL----------g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~---------~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 336 QEYDRHL----------GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE---------MHTMPCLTLHPN 396 (503)
T ss_pred HHHHhhh----------hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh---------hccCcceecCCC
Confidence 8887776 889999999999999999999999999998776554433221 345678999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC-CCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+++++.-+ .|+.|.+|.+...-....- ..+.+|. .+.-..+.|||||++|++|+.||.+.+||.++.+
T Consensus 397 ~~~~~aQs---------~dN~i~ifs~~~~~r~nkk--K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 397 GKWFAAQS---------MDNYIAIFSTVPPFRLNKK--KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred CCeehhhc---------cCceEEEEecccccccCHh--hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 99999998 7899999986543222111 1235662 2445678999999999999999999999999988
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEe
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWD 635 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd 635 (762)
....++ .|...+..+.|+|.. ..+|+++ ||.|++|+
T Consensus 466 l~~~lk-----------ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKLK-----------AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhccc-----------cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 877763 688999999999965 4688888 99999996
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-31 Score=268.41 Aligned_cols=285 Identities=24% Similarity=0.419 Sum_probs=249.0
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..+.+|...|.+++|+|++++|++++.++.+++|++.+++.. ....+...+..+.|+++++.+++++.++.+++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 466789999999999999999999999999999999987653 4556777888999999999999999999999999998
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
++....+..+. ..+.++.|+++++++++++.++.+.+||+.+++....+. .| ...+.+++
T Consensus 83 ~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~------~~~i~~~~ 142 (289)
T cd00200 83 GECVRTLTGHT----------SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR----GH------TDWVNSVA 142 (289)
T ss_pred ccceEEEeccC----------CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----cC------CCcEEEEE
Confidence 88888887665 688999999998888888889999999998766555443 12 56799999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|+|+++++++++ .++.|++||+.+++....+ ..| ...+.++.|+|+++.+++++.|+.+++||+.
T Consensus 143 ~~~~~~~l~~~~---------~~~~i~i~d~~~~~~~~~~-----~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 143 FSPDGTFVASSS---------QDGTIKLWDLRTGKCVATL-----TGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred EcCcCCEEEEEc---------CCCcEEEEEccccccceeE-----ecC-ccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 999999999886 6899999999977766555 356 7789999999999999999999999999998
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEE
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l 664 (762)
.++....+ ..|...+.+++|+|++.++++++ |+.|++||+.+++.+..+..|...|.+++|+|++++|
T Consensus 208 ~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (289)
T cd00200 208 TGKCLGTL-----------RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276 (289)
T ss_pred CCceecch-----------hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEE
Confidence 86665544 24677999999999999999998 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEE
Q 040987 665 VATSWGSKPQLSVWN 679 (762)
Q Consensus 665 ~s~~~d~~~~v~vwd 679 (762)
++++.|+. |++|+
T Consensus 277 ~~~~~d~~--i~iw~ 289 (289)
T cd00200 277 ASGSADGT--IRIWD 289 (289)
T ss_pred EEecCCCe--EEecC
Confidence 99999998 99996
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.5e-33 Score=262.72 Aligned_cols=289 Identities=15% Similarity=0.193 Sum_probs=242.9
Q ss_pred CCcceeeeecCcccccCCceeec-CCCEEEEEe-CCEEEEEEccc-ceEEeeecCCccceeEEEEeCCCCcccceeeeEE
Q 040987 61 PAVNSKMIRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTST-GLQISSLEGHKAPVTTVIVVPASTPATKILSYCW 137 (762)
Q Consensus 61 ~~~~~~~~~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~ 137 (762)
+......+.||+..|++ +.|.| .+.+|++++ |+.|+||++-. +++++++.||..+|..++|+++|. -+.
T Consensus 203 Pkk~~~~~~gH~kgvsa-i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-------~fL 274 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSA-IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-------SFL 274 (503)
T ss_pred cHhheeeccCCccccch-hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-------eee
Confidence 44555677999999997 99999 899999999 89999999976 899999999999999999999994 455
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
|+|.|+.|++||.++|+++..+...
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~~~------------------------------------------------------- 299 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFHLD------------------------------------------------------- 299 (503)
T ss_pred eeecceeeeeeccccceEEEEEecC-------------------------------------------------------
Confidence 9999999999999999999887632
Q ss_pred EEecCCccccceeeeccCCCceEEEECCCC-CEE-EEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSSG-KYF-GIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l-a~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
..+.|+.|.||+ +.+ +++.|+.|+-||+.+++.. +....|-+.|..+.|-++|++
T Consensus 300 ------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv-----qeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 300 ------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV-----QEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred ------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH-----HHHHhhhhheeeeEEccCCce
Confidence 345677889988 444 4568999999999999977 677789999999999999999
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
+++.+.|+.++||+....-.++ .....+.....++..+|++++++.-+.|.
T Consensus 357 FissSDdks~riWe~~~~v~ik-----------------------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIK-----------------------------NIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred EeeeccCccEEEEEcCCCccch-----------------------------hhcchhhccCcceecCCCCCeehhhccCc
Confidence 9999999999999986654332 11222333466889999999999999999
Q ss_pred eEEEEecCCCce----eccCCCC--CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCce
Q 040987 376 VLVVWQLDTGKK----KFLPRIG--SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 376 ~i~~wd~~~~~~----~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
.|.++.+...-. ..+.+|. +.-..+.|||||.+|++|..+|.+.+||.++-+++..++.|. +.+
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~----------~~c 477 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD----------QPC 477 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC----------cce
Confidence 999998654322 2334443 456678999999999999999999999999999999999987 788
Q ss_pred eeEEEeCC-CCEEEEeecCceEEEEE
Q 040987 450 RDIAFNHD-GGLVALRAENYCIHFYS 474 (762)
Q Consensus 450 ~~~~~s~~-~~~l~~~~~dg~i~i~d 474 (762)
..+.|+|. ...+|+++.+|.|++|+
T Consensus 478 i~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 478 IGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEEecCCCcceeEecccCceeEecC
Confidence 99999995 45799999999999996
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-32 Score=231.07 Aligned_cols=280 Identities=20% Similarity=0.278 Sum_probs=238.1
Q ss_pred EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCC
Q 040987 106 QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPP 185 (762)
Q Consensus 106 ~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 185 (762)
.++.|..|.++|.++.|.-|| +|.++++.|++|++|+...|.+++++.+|.
T Consensus 9 r~~~l~~~qgaV~avryN~dG-------nY~ltcGsdrtvrLWNp~rg~liktYsghG---------------------- 59 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDG-------NYCLTCGSDRTVRLWNPLRGALIKTYSGHG---------------------- 59 (307)
T ss_pred hceeecccccceEEEEEccCC-------CEEEEcCCCceEEeecccccceeeeecCCC----------------------
Confidence 567788999999999999999 799999999999999999999999887664
Q ss_pred ceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEcc
Q 040987 186 KLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVP 264 (762)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~ 264 (762)
..|..++.+.|...++ +|.|..+.+||+.
T Consensus 60 --------------------------------------------------~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 60 --------------------------------------------------HEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred --------------------------------------------------ceeeeccccccccccccCCCCceEEEEEcc
Confidence 3344556666777776 5589999999999
Q ss_pred CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccc
Q 040987 265 DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD 344 (762)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (762)
+++.. +.+.+|.+.|+.++|+.+...+++|+.|..+++||.++.. .+
T Consensus 90 TGkv~-----Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s----------------------------~e 136 (307)
T KOG0316|consen 90 TGKVD-----RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS----------------------------FE 136 (307)
T ss_pred cCeee-----eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC----------------------------CC
Confidence 99876 7788999999999999999999999999999999986653 35
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
+++.+....+.|.++..+ +..|+.|+.||+++.||++.|+.. ..-.+.+|+++.|++|++..++++.++++++.|-.
T Consensus 137 PiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred ccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 678888888999998885 568999999999999999998763 33456789999999999999999999999999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
+|+++...++|... ..-...+++.....+++|++||.+++||+.....+..+.... ...+.++
T Consensus 214 tGklL~sYkGhkn~--------eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~---------~v~v~dl 276 (307)
T KOG0316|consen 214 TGKLLKSYKGHKNM--------EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS---------TVIVTDL 276 (307)
T ss_pred hhHHHHHhcccccc--------eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC---------ceeEEee
Confidence 99999999999843 233566778778899999999999999999988777765542 2338999
Q ss_pred EEecCCCeEEEEe
Q 040987 505 ALSQDGSLMSTVD 517 (762)
Q Consensus 505 ~~sp~g~~l~~~~ 517 (762)
+++|.-..|.++.
T Consensus 277 ~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 277 SCHPTMDDFITAT 289 (307)
T ss_pred ecccCccceeEec
Confidence 9999887777764
No 58
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-29 Score=248.25 Aligned_cols=472 Identities=15% Similarity=0.208 Sum_probs=332.3
Q ss_pred cccccCCceeecCCCEEEEEe-CCEEEEEEcccce-EEeeecCCc-cceeEEEEeCCCCcccceeeeEEeeecCCeEEEE
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-QISSLEGHK-APVTTVIVVPASTPATKILSYCWTASLDGTIKYW 148 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-~~~~l~~h~-~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vW 148 (762)
+..|.+ ||||.+.+.||.+- +|.|.||++..+= +...+.++. ..|.+++|++.+ | |+|.+.+|+|.-|
T Consensus 25 Ps~I~s-lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~----R----LFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 25 PSEIVS-LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG----R----LFSSGLSGSITEW 95 (691)
T ss_pred ccceEE-EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC----e----EEeecCCceEEEE
Confidence 456776 99999999999998 7999999998763 445566654 589999999776 3 4599999999999
Q ss_pred eCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccc
Q 040987 149 DFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAG 228 (762)
Q Consensus 149 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~ 228 (762)
|+.+++.+..++.
T Consensus 96 Dl~~lk~~~~~d~------------------------------------------------------------------- 108 (691)
T KOG2048|consen 96 DLHTLKQKYNIDS------------------------------------------------------------------- 108 (691)
T ss_pred ecccCceeEEecC-------------------------------------------------------------------
Confidence 9999987766542
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+.|++++.+|.+..++.+ .||.+..++...++. .....+...++.|.+++|+|++..++.|+.||.|++
T Consensus 109 -----~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 109 -----NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred -----CCcceeEEEeCCccceEEeecCCceEEEEecCCceE---EEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 24567888999999988855 889888888887775 344455555789999999999999999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
||...+......+.+.. .+. +..--|+++.|-.++ .|++|...|+|.+||...+.
T Consensus 181 wd~~~~~t~~~~~~~~d-----------------------~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLD-----------------------RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEcCCCceEEEeeeccc-----------------------ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc
Confidence 99988876542211111 111 123347788887665 78999999999999999998
Q ss_pred ee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee
Q 040987 387 KK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA 465 (762)
Q Consensus 387 ~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 465 (762)
.. ....|...|.+++.++++.++++++.|+.+..|...+......... ..+.|...+.+++..++ .+++|+
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~------~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS------RRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec------cccCCcccceeeeeecc--eEEecc
Confidence 85 4566888999999999999999999999999998877543211111 12233478899999887 899999
Q ss_pred cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce---
Q 040987 466 ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--- 542 (762)
Q Consensus 466 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--- 542 (762)
.|..+.+-.....+......... ...-..+...|..++++.- ....+.+|.+.+....
T Consensus 309 ~d~~l~i~~s~~~~~~~h~~~~~---------~p~~~~v~~a~~~~L~~~w----------~~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 309 RDFTLAICSSREFKNMDHRQKNL---------FPASDRVSVAPENRLLVLW----------KAHGVDLWRLGSVILQGEY 369 (691)
T ss_pred eeeEEEEccccccCchhhhcccc---------ccccceeecCccceEEEEe----------ccccccceeccCccccccc
Confidence 99988876654421111100000 0001122333444444333 3457778877665211
Q ss_pred -e-EEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC
Q 040987 543 -F-TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 543 -~-~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 620 (762)
. .+-.. .... ...|.+.+.||+|++++.+.- ..++||.++....+.... .............+.|+-|+
T Consensus 370 ~~~~Llkl-~~k~-~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~------v~~~~~~~~~a~~i~ftid~ 440 (691)
T KOG2048|consen 370 NYIHLLKL-FTKE-KENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVIN------VDDVPLALLDASAISFTIDK 440 (691)
T ss_pred Chhhheee-ecCC-ccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEE------eccchhhhccceeeEEEecC
Confidence 1 11111 1223 568999999999999998874 468888887643222211 11111223466788999898
Q ss_pred cEEEEEc--CCeEEEEeCCCC--eEEEEec--cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 621 SVLAVAA--ETVITLWDPDRN--VLVAVIG--ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 621 ~~la~~~--d~~i~iwd~~~~--~~~~~l~--~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
..++..+ +..+.+.+.++. +.+..+. +-...|..+..|+||++||+.+.+|. |.+|++++++..+..
T Consensus 441 ~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~--I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 441 NKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQ--IFVYNLETLESHLLK 513 (691)
T ss_pred ceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccce--EEEEEcccceeecch
Confidence 8877766 688888888765 3333222 23456999999999999999999987 999999998765544
No 59
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.7e-32 Score=244.59 Aligned_cols=290 Identities=16% Similarity=0.190 Sum_probs=254.5
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 420 (762)
.++..+++.+|.+.|.++++.|...+|++|+.|+++.+||+.+++.. .+.+|-..+..+++|+...++++++.|+.|+-
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 45677889999999999999999999999999999999999999985 57779999999999999999999999999999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
||+...+.++.+.+|- +.|.+++..|.-..|++++.|..+++||+++...+..+.. | ...
T Consensus 220 wDLe~nkvIR~YhGHl----------S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G----H------~~~ 279 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHL----------SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG----H------TNP 279 (460)
T ss_pred EechhhhhHHHhcccc----------ceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC----C------CCc
Confidence 9999999999999988 8999999999999999999999999999999876665543 3 788
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
|..+.+.|-...+++++ .|++|++||+..++....+ ..| ...|++++.+|....+|+++.|. |+
T Consensus 280 V~~V~~~~~dpqvit~S---------~D~tvrlWDl~agkt~~tl-----t~h-kksvral~lhP~e~~fASas~dn-ik 343 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGS---------HDSTVRLWDLRAGKTMITL-----THH-KKSVRALCLHPKENLFASASPDN-IK 343 (460)
T ss_pred ceeEEeecCCCceEEec---------CCceEEEeeeccCceeEee-----ecc-cceeeEEecCCchhhhhccCCcc-ce
Confidence 99999999999999999 8899999999999876665 457 88999999999999999999875 99
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc--------ccCc
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE--------TLTP 651 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~--------~~~~ 651 (762)
-|++..+.....+ .+|..-|++++...|| ++++|+ +|.+.+||.++|-..+.++. ....
T Consensus 344 ~w~~p~g~f~~nl-----------sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag 411 (460)
T KOG0285|consen 344 QWKLPEGEFLQNL-----------SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG 411 (460)
T ss_pred eccCCccchhhcc-----------ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccc
Confidence 9999988877665 4788999999998887 455555 89999999999854443311 2344
Q ss_pred eeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 652 IMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
|.+.+|...|..|++|..|.+ |++|.-+
T Consensus 412 I~as~fDktg~rlit~eadKt--Ik~~keD 439 (460)
T KOG0285|consen 412 IFASCFDKTGSRLITGEADKT--IKMYKED 439 (460)
T ss_pred eeEEeecccCceEEeccCCcc--eEEEecc
Confidence 899999999999999999998 9999754
No 60
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=276.17 Aligned_cols=288 Identities=16% Similarity=0.291 Sum_probs=247.9
Q ss_pred eeeec-cccceeEEEEecCCCEEEEEecCCeEEEEecCCCc--e-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 347 TTWHW-HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--K-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 347 ~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~--~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
..+.+ +...|.++.|+++|+.+++++.++.+++|+..+.+ . ..+.+|...|..++|+|+++++++++.|+++++||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 33434 37789999999999999999999999999997776 3 33467888999999999999999999999999999
Q ss_pred c-CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 423 M-PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 423 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+ ..+..++++.+|. ..|.+++|+|+++++++|+.|++|++||+++++....+..+ ...|
T Consensus 232 ~~~~~~~~~~l~gH~----------~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----------s~~i 291 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHS----------TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH----------SDGI 291 (456)
T ss_pred ccCCCeEEEEecCCC----------CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc----------CCce
Confidence 9 5568999999998 78999999999999999999999999999998776666543 7789
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce--eEEEEEeecCCCCC-ceEEEEEcCCCCeEEEEeCCCc
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--FTLSTIVYEPHRDA-GISAVAFHPNRRAAVSSSYGGD 578 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~h~~~-~v~~~~~spd~~~l~~~~~dg~ 578 (762)
.+++|++++++|++++ .|+.|++||+.++... ..+ .++... .++++.|+|+++++++++.|+.
T Consensus 292 s~~~f~~d~~~l~s~s---------~d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSAS---------YDGTIRVWDLETGSKLCLKLL-----SGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred EEEEECCCCCEEEEcC---------CCccEEEEECCCCceeeeecc-----cCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 9999999999999998 8999999999999843 333 233122 6999999999999999999999
Q ss_pred EEEEEcccccccccccCCceeeeeecccCCC---CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc-cCcee
Q 040987 579 FKVWICNDELQQKDLQSSGWSCHAVGSYKKK---AMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET-LTPIM 653 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~-~~~v~ 653 (762)
+++||+..+....... .|.. .+.+...+++++++.+|+ |+.|++||..++..+..+.+| ...+.
T Consensus 358 ~~~w~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~ 426 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYT-----------GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVS 426 (456)
T ss_pred EEEEEccCCcceeeec-----------ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCcee
Confidence 9999999887766553 2333 444556688999999999 999999999999999999999 88899
Q ss_pred EEEEeCCCCEEEEEE--cCCCCeEEEEECC
Q 040987 654 NMSFVGSSEYLVATS--WGSKPQLSVWNMS 681 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~--~d~~~~v~vwd~~ 681 (762)
.++++|...++++++ .|+. +++|..+
T Consensus 427 ~~~~~~~~~~~~s~s~~~d~~--~~~w~~~ 454 (456)
T KOG0266|consen 427 DLSSHPTENLIASSSFEGDGL--IRLWKYD 454 (456)
T ss_pred ccccCCCcCeeeecCcCCCce--EEEecCC
Confidence 999999999999999 5665 9999754
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=236.98 Aligned_cols=289 Identities=16% Similarity=0.219 Sum_probs=254.6
Q ss_pred eeeeccCcCeEEEEEcC---CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec
Q 040987 275 KITLHHTKKLTVLAFHP---TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW 351 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp---~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (762)
..-.+|..+|..++||| +|-+|++++.||.-.+-+-+++ .-+.++.+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg------------------------------dwigtfeg 57 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG------------------------------DWIGTFEG 57 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC------------------------------CcEEeeec
Confidence 45568999999999986 8889999999987766665555 44579999
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc-eEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM-EIIR 430 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~-~~~~ 430 (762)
|.+.|++...+.+..+.++++.|-+-++||.-+|..+....|..-|..++|+.|.++|++|+.+.-++|||++.. .+..
T Consensus 58 hkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~ 137 (334)
T KOG0278|consen 58 HKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK 137 (334)
T ss_pred cCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch
Confidence 999999999999988899999999999999999999999999999999999999999999999999999999863 3456
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
.+.+|. +.|..+.|....+.+++.+.|++|++||.+++..+.++.. ...|+++.+++||
T Consensus 138 E~~ght----------g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-----------~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 138 EISGHT----------GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-----------NSPVTSLEVSQDG 196 (334)
T ss_pred hhcCCC----------CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-----------CCCCcceeeccCC
Confidence 677776 8999999999999999999999999999999999888876 5679999999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
++|.++ ..+.|.+||..+-..+..... +..|.+...+|+...+++|+.|..++.||+.++..+
T Consensus 197 ~ilTia----------~gssV~Fwdaksf~~lKs~k~-------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 197 RILTIA----------YGSSVKFWDAKSFGLLKSYKM-------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred CEEEEe----------cCceeEEeccccccceeeccC-------ccccccccccCCCceEEecCcceEEEEEeccCCcee
Confidence 999888 457999999998887766542 568999999999999999999999999999999877
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
... ..+|.++|.|+.|+|||...|+|+ ||+|+||.+..++.
T Consensus 260 ~~~----------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 260 GSY----------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eec----------ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 654 247899999999999999999999 99999999876643
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=244.34 Aligned_cols=285 Identities=20% Similarity=0.242 Sum_probs=244.5
Q ss_pred ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeec--------CCccceeEEEEeCCCCcccceeeeEEee
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE--------GHKAPVTTVIVVPASTPATKILSYCWTA 139 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~--------~h~~~V~~v~~s~~~~~~~~l~~~l~s~ 139 (762)
.|.+..+.| ..|||||+||++|+ ||-|.|||..+|++.+.|+ -+..+|.|+.||.|. ..||||
T Consensus 210 Fg~KSh~Ec-A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-------EMlAsG 281 (508)
T KOG0275|consen 210 FGQKSHVEC-ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-------EMLASG 281 (508)
T ss_pred cccccchhh-eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-------HHhhcc
Confidence 677788887 99999999999999 8999999999998776553 478899999999999 688999
Q ss_pred ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 140 s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+.||.|+||.+.+|.|++.|
T Consensus 282 sqDGkIKvWri~tG~ClRrF------------------------------------------------------------ 301 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRF------------------------------------------------------------ 301 (508)
T ss_pred CcCCcEEEEEEecchHHHHh------------------------------------------------------------
Confidence 99999999999988876543
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
...|...|+|+.||.|+..++++
T Consensus 302 ---------------------------------------------------------drAHtkGvt~l~FSrD~SqiLS~ 324 (508)
T KOG0275|consen 302 ---------------------------------------------------------DRAHTKGVTCLSFSRDNSQILSA 324 (508)
T ss_pred ---------------------------------------------------------hhhhccCeeEEEEccCcchhhcc
Confidence 34678899999999999999999
Q ss_pred ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 040987 300 DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVV 379 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~ 379 (762)
+.|.++++.-++++ ++++.+++|...|+...|++||.++++++.||+|++
T Consensus 325 sfD~tvRiHGlKSG------------------------------K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 325 SFDQTVRIHGLKSG------------------------------KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred cccceEEEeccccc------------------------------hhHHHhcCccccccceEEcCCCCeEEEecCCccEEE
Confidence 99999999998776 456789999999999999999999999999999999
Q ss_pred EecCCCceecc---CCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 380 WQLDTGKKKFL---PRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 380 wd~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
|+.++.++... .+...+|.++..-| +...++++...+++.|.++. |+.++.+...+.+- +...+.+.+
T Consensus 375 W~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREg-------GdFi~~~lS 446 (508)
T KOG0275|consen 375 WHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREG-------GDFINAILS 446 (508)
T ss_pred ecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccC-------CceEEEEec
Confidence 99999988532 23345778877766 44678888889999999987 78888887655332 677888999
Q ss_pred CCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
|.|.++.+.++|+.++.|...+++....+... ...+-.++-+|..+.+|+-+ .|+.+++|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~Vh----------EkdvIGl~HHPHqNllAsYs---------EDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH----------EKDVIGLTHHPHQNLLASYS---------EDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecc----------cccccccccCcccchhhhhc---------ccchhhhcC
Confidence 99999999999999999999999887777665 44578889999999999988 899999994
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-32 Score=234.06 Aligned_cols=291 Identities=17% Similarity=0.232 Sum_probs=254.0
Q ss_pred eeeeecCcccccCCceee---cCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeee
Q 040987 65 SKMIRGGRSYVSSPPAFS---NDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTAS 140 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s---~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s 140 (762)
.++..||+.+|.. ++|| |+|-+|++++ |+.--+-+-+||.-+.+|.||.+.|++.....+. ...|+++
T Consensus 7 pl~c~ghtrpvvd-l~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na-------~~aasaa 78 (334)
T KOG0278|consen 7 PLTCHGHTRPVVD-LAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA-------TRAASAA 78 (334)
T ss_pred ceEEcCCCcceeE-EeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh-------hhhhhhc
Confidence 4567999999998 9998 5899999999 8888888889999999999999999999999888 4567999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.|-+-+|||.-+|..+++|
T Consensus 79 adftakvw~a~tgdelhsf------------------------------------------------------------- 97 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSF------------------------------------------------------------- 97 (334)
T ss_pred ccchhhhhhhhhhhhhhhh-------------------------------------------------------------
Confidence 9999999998887765543
Q ss_pred cCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
.|..-|.+++|+.|.++|++|+
T Consensus 98 ----------------------------------------------------------~hkhivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 98 ----------------------------------------------------------EHKHIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred ----------------------------------------------------------hhhheeeeEEecccchhhhccc
Confidence 2445577899999999999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
.+..++|||++..+ .+...+.+|.+.|..+.|....+.|++.+.|++|++|
T Consensus 120 ~ekllrvfdln~p~-----------------------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPK-----------------------------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLW 170 (334)
T ss_pred hHHHhhhhhccCCC-----------------------------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence 99999999986543 3446788999999999999988999999999999999
Q ss_pred ecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 381 QLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 381 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
|.+++........+.+|.++.++++|++|.++ ..+.|.+||..+..+++.++-. ..|.+..++|+...
T Consensus 171 D~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-----------~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 171 DHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-----------CNVESASLHPKKEF 238 (334)
T ss_pred EeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-----------cccccccccCCCce
Confidence 99999999888899999999999999988776 6779999999998888877643 47889999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+++|++|..++.||..++..+... .++| .++|.|+.|+|||...|+|+ .||+|++|....++
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~---nkgh------~gpVhcVrFSPdGE~yAsGS---------EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSY---NKGH------FGPVHCVRFSPDGELYASGS---------EDGTIRLWQTTPGK 300 (334)
T ss_pred EEecCcceEEEEEeccCCceeeec---ccCC------CCceEEEEECCCCceeeccC---------CCceEEEEEecCCC
Confidence 999999999999999999876653 2333 78899999999999999999 99999999988765
Q ss_pred c
Q 040987 541 K 541 (762)
Q Consensus 541 ~ 541 (762)
.
T Consensus 301 ~ 301 (334)
T KOG0278|consen 301 T 301 (334)
T ss_pred c
Confidence 4
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-30 Score=224.53 Aligned_cols=277 Identities=17% Similarity=0.250 Sum_probs=239.2
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee---ccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEE
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLK 422 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d 422 (762)
+.+++|...+.+++|+.+|..|++++.|+++.+|+++..+.. ...+|.+.|..++|+| +..++++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 567789999999999999999999999999999999887553 3566777888999987 457899999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
.+.+++........ .-.-+.|+|+|++++++..|..|.+.|.++.+...+.+. ...+.
T Consensus 94 ~r~~k~~~~i~~~~-----------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-----------~~e~n 151 (313)
T KOG1407|consen 94 IRSGKCTARIETKG-----------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-----------KFEVN 151 (313)
T ss_pred eccCcEEEEeeccC-----------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-----------cceee
Confidence 99999988876543 335689999999999999999999999998776655433 45688
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
.++|+.++.+++... +.|+|.|......+.+..+ .+| .....|+.|+|+|+++|+|+.|-.+.+|
T Consensus 152 e~~w~~~nd~Fflt~---------GlG~v~ILsypsLkpv~si-----~AH-~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 152 EISWNNSNDLFFLTN---------GLGCVEILSYPSLKPVQSI-----KAH-PSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred eeeecCCCCEEEEec---------CCceEEEEecccccccccc-----ccC-CcceEEEEECCCCceEeeccccceeecc
Confidence 899998888777776 7799999999988777766 678 7888899999999999999999999999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCC
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSS 661 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg 661 (762)
|++.--+.+.+ ..+.-+|..+.||.||++||+|+ |..|-|=++++|..+..++ +.++...++|+|..
T Consensus 217 D~~ELiC~R~i-----------sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 217 DVDELICERCI-----------SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR 284 (313)
T ss_pred ChhHhhhheee-----------ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC
Confidence 99865554443 46788999999999999999999 9999999999999999986 88999999999999
Q ss_pred CEEEEEEcCCC
Q 040987 662 EYLVATSWGSK 672 (762)
Q Consensus 662 ~~l~s~~~d~~ 672 (762)
.+||.+.+|..
T Consensus 285 ~LLAyA~ddk~ 295 (313)
T KOG1407|consen 285 PLLAYACDDKD 295 (313)
T ss_pred ceeeEEecCCC
Confidence 99999988764
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.4e-30 Score=287.96 Aligned_cols=288 Identities=14% Similarity=0.146 Sum_probs=233.9
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--------eccCCCCCCeEEEEeCC-CCCeEEEEecCCcEE
Q 040987 349 WHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--------KFLPRIGSPLLYFTESP-DPSLSSISCADNQVH 419 (762)
Q Consensus 349 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--------~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~ 419 (762)
+..|...|.+++|+|+|++|++++.|+.|++|+...... .....+...+.+++|++ ++.+|++++.|+.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 445899999999999999999999999999999764211 11122346788999987 478999999999999
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
+||+.+++.+..+.+|. +.|.+++|+| ++.+|++++.|+.|++||+.++..+..+.. .
T Consensus 559 lWd~~~~~~~~~~~~H~----------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-----------~ 617 (793)
T PLN00181 559 VWDVARSQLVTEMKEHE----------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-----------K 617 (793)
T ss_pred EEECCCCeEEEEecCCC----------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-----------C
Confidence 99999999999998887 7899999997 789999999999999999998876655432 3
Q ss_pred eeEEEEEEe-cCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 499 VVVTLVALS-QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 499 ~~v~~~~~s-p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
..+.++.|+ ++|.+|++++ .|+.|++||+..... ... ..+| ...|.++.|. ++.+|++++.|
T Consensus 618 ~~v~~v~~~~~~g~~latgs---------~dg~I~iwD~~~~~~~~~~-----~~~h-~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGS---------ADHKVYYYDLRNPKLPLCT-----MIGH-SKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEe---------CCCeEEEEECCCCCccceE-----ecCC-CCCEEEEEEe-CCCEEEEEECC
Confidence 358899995 5799999999 899999999987653 222 2578 8899999997 77899999999
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE-----------
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV----------- 644 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~----------- 644 (762)
++|++||+..+.... .+.+.....+|...+..++|+|++++|++|+ |+.|++|+......+..
T Consensus 682 ~~ikiWd~~~~~~~~-----~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~ 756 (793)
T PLN00181 682 NTLKLWDLSMSISGI-----NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG 756 (793)
T ss_pred CEEEEEeCCCCcccc-----CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccc
Confidence 999999997542110 1122334557888999999999999999998 99999999876543322
Q ss_pred --eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 645 --IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 645 --l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
...|...|.+++|+|++.+|++++.||. |++|++
T Consensus 757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~--I~i~~~ 792 (793)
T PLN00181 757 LEVDDASQFISSVCWRGQSSTLVAANSTGN--IKILEM 792 (793)
T ss_pred cccCCCCcEEEEEEEcCCCCeEEEecCCCc--EEEEec
Confidence 1234556999999999999999999998 999997
No 66
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=7.2e-32 Score=243.30 Aligned_cols=276 Identities=16% Similarity=0.281 Sum_probs=234.7
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
....|+|+.+ |...+++|..|.+|++||..+..+. .+.+|.+.|.|+.|. .+.+++|+.|.+|++||.++++++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 4467899988 4568999999999999999988775 578999999999874 5699999999999999999999999
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
++-.|. ..|..+.|+. .++++++.|.++.+||+.....+ .+.....+| ...|..+.|+ .
T Consensus 272 tlihHc----------eaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i-t~rrVLvGH------rAaVNvVdfd--~ 330 (499)
T KOG0281|consen 272 TLIHHC----------EAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI-TLRRVLVGH------RAAVNVVDFD--D 330 (499)
T ss_pred HHhhhc----------ceeEEEEEeC--CEEEEecCCceeEEEeccCchHH-HHHHHHhhh------hhheeeeccc--c
Confidence 999887 7888999984 48999999999999999876532 222233444 6778888885 4
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
+++++++ +|.+|++|++.+.+.+..+ .+| ...|.|+.+ .++++++|+.|.+|++||+..|.+.
T Consensus 331 kyIVsAS---------gDRTikvW~~st~efvRtl-----~gH-kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 331 KYIVSAS---------GDRTIKVWSTSTCEFVRTL-----NGH-KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred ceEEEec---------CCceEEEEeccceeeehhh-----hcc-cccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence 6999999 9999999999999988776 689 889988887 5899999999999999999999988
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe---------EEEEeccccCceeEEEEeCC
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV---------LVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~---------~~~~l~~~~~~v~~~~~s~d 660 (762)
..++ +|+.-|.++.| |.+.+++|. ||+|+|||+.++. ++..+..|.+.|..+.| |
T Consensus 394 RvLe-----------GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D 458 (499)
T KOG0281|consen 394 RVLE-----------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--D 458 (499)
T ss_pred HHHh-----------chHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--c
Confidence 7774 89999999999 677899998 9999999998764 44556679999999999 5
Q ss_pred CCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 661 SEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 661 g~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
...+++++.|.+ |.+||..++-..
T Consensus 459 ~fqIvsssHddt--ILiWdFl~~~~~ 482 (499)
T KOG0281|consen 459 EFQIISSSHDDT--ILIWDFLNGPPS 482 (499)
T ss_pred ceEEEeccCCCe--EEEEEcCCCCcc
Confidence 689999999998 999999876443
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.7e-30 Score=218.39 Aligned_cols=285 Identities=13% Similarity=0.159 Sum_probs=241.4
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
....+..+.++|..+.|+-||++.++++.|.+|++|+...+..+ ...+|+..|..++.+.|+..+++++.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34678899999999999999999999999999999999998885 57889999999999999999999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
++|+..+.+.+|. +.|..+.|+.+...+++|+.|..+++||-++..... ++.. +.....|.+
T Consensus 89 ~TGkv~Rr~rgH~----------aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQil-------dea~D~V~S 150 (307)
T KOG0316|consen 89 NTGKVDRRFRGHL----------AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQIL-------DEAKDGVSS 150 (307)
T ss_pred ccCeeeeeccccc----------ceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchh-------hhhcCceeE
Confidence 9999999999998 889999999999999999999999999998754321 1111 111456777
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
+..+ +..+++|+ .||+++.||++.++..... .+| +|+++.|++|++....++.|+++++.|
T Consensus 151 i~v~--~heIvaGS---------~DGtvRtydiR~G~l~sDy-----~g~---pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 151 IDVA--EHEIVAGS---------VDGTVRTYDIRKGTLSSDY-----FGH---PITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred EEec--ccEEEeec---------cCCcEEEEEeecceeehhh-----cCC---cceeEEecCCCCEEEEeeccceeeecc
Confidence 7664 56788888 8999999999988764332 344 999999999999999999999999999
Q ss_pred cccccccccccCCceeeeeecccCCC--CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCc-eeEEEEeC
Q 040987 584 CNDELQQKDLQSSGWSCHAVGSYKKK--AMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTP-IMNMSFVG 659 (762)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~-v~~~~~s~ 659 (762)
-.+++.+...+ +|.. .-..++++.....+++|+ ||.|++||+.+...+..+..|... |.++.++|
T Consensus 212 k~tGklL~sYk-----------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 212 KETGKLLKSYK-----------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHP 280 (307)
T ss_pred cchhHHHHHhc-----------ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeeccc
Confidence 99999988764 3332 334567777788999999 999999999999999999888777 89999999
Q ss_pred CCCEEEEEEcCCCCeEEEEEC
Q 040987 660 SSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~ 680 (762)
.-..++++...+ +..|--
T Consensus 281 ~~~~f~~A~~~~---~~~~~~ 298 (307)
T KOG0316|consen 281 TMDDFITATGHG---DLFWYQ 298 (307)
T ss_pred CccceeEecCCc---eeceee
Confidence 877788887666 677753
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=2e-30 Score=225.28 Aligned_cols=282 Identities=20% Similarity=0.231 Sum_probs=237.9
Q ss_pred cCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeee--cCCccceeEEEEeCCCCcccceeeeE
Q 040987 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL--EGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 60 ~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l--~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
+.+.+...+++|...|.+ ++|+.||..||+++ |+++.||+++..+.+..+ .+|.+.|..++|+|..+ ..+
T Consensus 8 ~~~l~~r~~~~~~~~v~S-v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~------d~~ 80 (313)
T KOG1407|consen 8 FKSLKRRELQGHVQKVHS-VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP------DLF 80 (313)
T ss_pred hhhhhhHHhhhhhhcceE-EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC------cce
Confidence 344445667899999997 99999999999999 899999999888666543 68999999999999887 788
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++++.|.+|++||++.+++...+.....-..+.+ ++++.. + +.+..|..|
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~w--------sp~g~~---~-------------------~~~~kdD~i 130 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARIETKGENINITW--------SPDGEY---I-------------------AVGNKDDRI 130 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEeeccCcceEEEE--------cCCCCE---E-------------------EEecCcccE
Confidence 8999999999999999999998876653222222 333332 1 567789999
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
.+.|.++.+.. ........+.-++|+-++.++. ....|.|.|.....-+.. .....|.....|+.|+|+|++
T Consensus 131 t~id~r~~~~~--~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-----~si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 131 TFIDARTYKIV--NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-----QSIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred EEEEeccccee--ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc-----cccccCCcceEEEEECCCCce
Confidence 99999888776 3334456778889988777775 556799999999977655 677799999999999999999
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
+|+|+.|..+.+||++.- -+.+.+..+.-+|..++|+.||++|+++++|.
T Consensus 204 fA~GsADAlvSLWD~~EL------------------------------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDEL------------------------------ICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred EeeccccceeeccChhHh------------------------------hhheeeccccCceEEEEeccCcceeeccCccc
Confidence 999999999999998543 35678888999999999999999999999999
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD 415 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 415 (762)
.|-+-++++|.......+.++...++|+|...+||.++.|
T Consensus 254 ~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 254 FIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999999999999999998765
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.9e-29 Score=284.19 Aligned_cols=311 Identities=16% Similarity=0.223 Sum_probs=241.1
Q ss_pred cccEEEEecCCccccc----eeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhh--eeeeeeeccCcCeE
Q 040987 213 NGRICKCNLTESRLAG----GVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERV--VMRKITLHHTKKLT 285 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~ 285 (762)
+|..++|+........ .....|...|.+++|+|+|++||+ +.|+.|+||++........ ........+...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 5667788777655432 223458899999999999999985 5799999999864211000 00011223456899
Q ss_pred EEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec-
Q 040987 286 VLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS- 363 (762)
Q Consensus 286 ~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~- 363 (762)
+++|+| ++++|++++.||.|++||+.+++ .+..+.+|...|++++|+|
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~------------------------------~~~~~~~H~~~V~~l~~~p~ 586 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQ------------------------------LVTEMKEHEKRVWSIDYSSA 586 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCe------------------------------EEEEecCCCCCEEEEEEcCC
Confidence 999987 47899999999999999997653 3457788999999999996
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEe-CCCCCeEEEEecCCcEEEEEcCCce-EEEEEccCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTE-SPDPSLSSISCADNQVHLLKMPSME-IIRSISGIKLPCPL 441 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~ 441 (762)
++.+|++++.|++|++||+.++...........+.++.| ++++.++++|+.|+.|++||+++.+ .+..+.+|.
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~----- 661 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS----- 661 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC-----
Confidence 789999999999999999998877654445568899999 4579999999999999999998765 456677766
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC------ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR------GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 515 (762)
..|.++.|. ++.++++++.|+.|++||+.... .+..+ .+| ...+..++|+|++++|++
T Consensus 662 -----~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~----~gh------~~~i~~v~~s~~~~~las 725 (793)
T PLN00181 662 -----KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF----MGH------TNVKNFVGLSVSDGYIAT 725 (793)
T ss_pred -----CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE----cCC------CCCeeEEEEcCCCCEEEE
Confidence 788999997 67899999999999999997532 22221 222 667889999999999999
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEE--------EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST--------IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
++ .|+.|++|+............ .....+ ...|.+++|+|++.+|++++.||.|+||++
T Consensus 726 gs---------~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 726 GS---------ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA-SQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred Ee---------CCCEEEEEECCCCCceEEEecccCCcccccccCCC-CcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99 899999999876544322211 111234 567999999999999999999999999996
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6.1e-30 Score=222.95 Aligned_cols=286 Identities=12% Similarity=0.148 Sum_probs=242.0
Q ss_pred eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
.+++|..+++.+.++.+|.+|++++.|.+..+|-..+|+.+ ...+|.+.|.++..+.+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 56889999999999999999999999999999998888876 67899999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCC-------ceeeEEeecccccCC
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDR-------GISEVQVCERNHQPG 494 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~-------~~~~~~~~~~~~~~~ 494 (762)
+.+..++.. ..|..+.|+++|++++..+++ +.|.++|++... +...+...
T Consensus 85 k~la~~k~~-----------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~------- 146 (327)
T KOG0643|consen 85 KQLATWKTN-----------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP------- 146 (327)
T ss_pred cEEEEeecC-----------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-------
Confidence 999998764 588999999999988877644 689999998432 23333322
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
...++.+.|.|-+++|+++. .+|.|.+||.+++....... ..| ...|+.+.++||..++++++
T Consensus 147 ---~skit~a~Wg~l~~~ii~Gh---------e~G~is~~da~~g~~~v~s~----~~h-~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 147 ---DSKITSALWGPLGETIIAGH---------EDGSISIYDARTGKELVDSD----EEH-SSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred ---ccceeeeeecccCCEEEEec---------CCCcEEEEEcccCceeeech----hhh-ccccccccccCCcceEEecc
Confidence 56799999999999999999 89999999999987654432 457 77999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--C-CeE------------EEEeCCCC
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--E-TVI------------TLWDPDRN 639 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d-~~i------------~iwd~~~~ 639 (762)
.|.+-++||..+-+.++.+. ...++++.+++|-...++.|+ + ..| ++|++-..
T Consensus 210 ~Dttakl~D~~tl~v~Kty~------------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 210 KDTTAKLVDVRTLEVLKTYT------------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred cCccceeeeccceeeEEEee------------ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 99999999999888877763 467999999999877777664 2 222 33344444
Q ss_pred eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 640 VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 640 ~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.+..+++|-++|++++|+|||+..++++.||. |++.-.+.
T Consensus 278 EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~--VR~h~Fd~ 318 (327)
T KOG0643|consen 278 EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY--VRLHHFDS 318 (327)
T ss_pred HHhccccccccCcceeEECCCCcccccCCCCce--EEEEEecc
Confidence 677888999999999999999999999999998 88875443
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.7e-31 Score=234.11 Aligned_cols=294 Identities=15% Similarity=0.188 Sum_probs=247.8
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhh---heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAER---VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
.+..+..+.+.|..|||||+||+++ -||.|.+|+..+++... .+....+--+.+.|.|+.||.|..+||+|+.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 4555677889999999999999966 69999999999988651 1122233457889999999999999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccccceeEEEEecCCCEEEEEecCCeEEEEecC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLD 383 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~ 383 (762)
|++|.+.+++ +++.+. .|+..|+++.|+.|+..+++++.|.++++.-++
T Consensus 287 IKvWri~tG~------------------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 287 IKVWRIETGQ------------------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred EEEEEEecch------------------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence 9999998874 455665 899999999999999999999999999999999
Q ss_pred CCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEE
Q 040987 384 TGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLV 461 (762)
Q Consensus 384 ~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 461 (762)
+|+.. .+.+|.+.|+...|++||..+++++.||+|++|+..+.+++.+++.... +..|.++..-| +...+
T Consensus 337 SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~--------d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 337 SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT--------DYPVNSVILLPKNPEHF 408 (508)
T ss_pred cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC--------cccceeEEEcCCCCceE
Confidence 99985 5788999999999999999999999999999999999999999876542 24677777766 55688
Q ss_pred EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 462 ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
+++...+++++.++. ++.+..+....+. .+..-+.+.+|.|.++.+.+ .|+.++.|...++..
T Consensus 409 iVCNrsntv~imn~q-GQvVrsfsSGkRE-------gGdFi~~~lSpkGewiYcig---------ED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 409 IVCNRSNTVYIMNMQ-GQVVRSFSSGKRE-------GGDFINAILSPKGEWIYCIG---------EDGVLYCFSVLSGKL 471 (508)
T ss_pred EEEcCCCeEEEEecc-ceEEeeeccCCcc-------CCceEEEEecCCCcEEEEEc---------cCcEEEEEEeecCce
Confidence 889999999999985 4455554332221 45567788999999999998 899999999999988
Q ss_pred eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 542 EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 542 ~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
...+. -| ...+..++-+|..+.+|+-++||.+++|.
T Consensus 472 E~tl~-----Vh-EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLP-----VH-EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeee-----cc-cccccccccCcccchhhhhcccchhhhcC
Confidence 77764 46 77888999999999999999999999994
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.8e-29 Score=228.28 Aligned_cols=316 Identities=18% Similarity=0.250 Sum_probs=244.1
Q ss_pred CcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeee
Q 040987 62 AVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTAS 140 (762)
Q Consensus 62 ~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s 140 (762)
-.+...-.-|.+.|.. +... +++|.+|+ ||.++|||. .|+..+++.||.++|.+++|.-..+ . -..++++|
T Consensus 95 aP~pl~~~~hdDWVSs-v~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~---~-~~~fvsas 166 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSS-VKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNS---S-SCLFVSAS 166 (423)
T ss_pred CCCccccccchhhhhh-hccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCC---c-cceEEEec
Confidence 3444555779999996 8877 78999999 999999996 7999999999999999888765442 1 02467999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.|.++++|-++.++..-..
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~------------------------------------------------------------- 185 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKA------------------------------------------------------------- 185 (423)
T ss_pred CCceEEEEEecCchhhhhH-------------------------------------------------------------
Confidence 9999999988765422100
Q ss_pred cCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
. ....+|...|.+++..++|.++++|+
T Consensus 186 ------------------------------------------------~-----~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 186 ------------------------------------------------L-----KVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred ------------------------------------------------H-----hHhcccccceeEEEecCCCCeEEeec
Confidence 0 12238888899999999999999999
Q ss_pred cCCeEEEEeccCCc--eeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEE
Q 040987 301 VTGRILIWRGFGDR--TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 301 ~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
.|..|.+|+..... .++....... .............++..+.+|..+|.++.|++ ...+++++.|.+|+
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rr-------k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk 284 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRR-------KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIK 284 (423)
T ss_pred ccceeeecccCCCccccccccchhhh-------hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEE
Confidence 99999999832221 1111100000 00000011223467788999999999999987 56899999999999
Q ss_pred EEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc---eEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 379 VWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 379 ~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
.||+.++........+..+.++.++|..++|++|+.|..+++||.+++ -...++.+|+ +.|.++.|+
T Consensus 285 ~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~----------nwVssvkws 354 (423)
T KOG0313|consen 285 VWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK----------NWVSSVKWS 354 (423)
T ss_pred EEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch----------hhhhheecC
Confidence 999999999887788889999999999999999999999999999874 3456788887 899999999
Q ss_pred CCC-CEEEEeecCceEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 456 HDG-GLVALRAENYCIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 456 ~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
|.. ..|++++.|+++++||+++.+ .+..+... ...|.++.|+ ++.++++|+ .|.+|++
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h----------~DKvl~vdW~-~~~~IvSGG---------aD~~l~i 414 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH----------NDKVLSVDWN-EGGLIVSGG---------ADNKLRI 414 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccC----------CceEEEEecc-CCceEEecc---------CcceEEE
Confidence 955 468899999999999999876 55555432 7789999996 466899998 8899999
Q ss_pred EEec
Q 040987 534 WVSG 537 (762)
Q Consensus 534 wd~~ 537 (762)
+...
T Consensus 415 ~~~~ 418 (423)
T KOG0313|consen 415 FKGS 418 (423)
T ss_pred eccc
Confidence 8654
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=224.57 Aligned_cols=315 Identities=13% Similarity=0.148 Sum_probs=247.9
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+..|..++.+.+|+|||.++|+|+.|..|+|.|++..-..........+ + ....-..++++..|.+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~------~------~qa~hPvIRTlYDH~d 173 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG------D------TQARHPVIRTLYDHVD 173 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC------C------cccCCceEeehhhccC
Confidence 456789999999999999999999999999999998632111100000000 0 0001145688899999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee---ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.|+++.|+|....|++++.|++|+++|+...... .......++.++.|+|.|.+|++|.....+++||+++.++.-.
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 9999999999999999999999999999865442 3445567899999999999999999999999999999877655
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
-... +.|.+.|.++.+++.+++.++++.||.|++||--+++++.++..... ...|.+..|..+|+
T Consensus 254 anPd-------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~--------gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 254 ANPD-------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG--------GSEVCSAVFTKNGK 318 (430)
T ss_pred cCcc-------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC--------CceeeeEEEccCCe
Confidence 4322 23558999999999999999999999999999999988877654333 56799999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEEccccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQ 590 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~ 590 (762)
++++.+ .|..+++|.+.+++.+......-..+. ..--+...|+....+++.-.+ .+.+.-||.++....
T Consensus 319 yiLsSG---------~DS~vkLWEi~t~R~l~~YtGAg~tgr-q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 319 YILSSG---------KDSTVKLWEISTGRMLKEYTGAGTTGR-QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred EEeecC---------CcceeeeeeecCCceEEEEecCCcccc-hhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 999998 889999999999988766543211122 222345667777777776543 467899999998877
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
... ..+|.+.+..+.-||.+.-+.+++ |..+++|--
T Consensus 389 ~l~----------slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 389 ALL----------SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhc----------ccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 665 247999999999999999999998 999999953
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=241.00 Aligned_cols=288 Identities=17% Similarity=0.225 Sum_probs=244.9
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 420 (762)
.....+..|.+.+..+.|-++...|++++.|..|++|+....+. ..+.+..++++.+.|.++++.+++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 34567788999999999999988999999999999999987774 245566678999999999999999999999999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
|++...+...++.+|. ..|+++.|......+++++.|.+|++||+....+..++.. ...
T Consensus 246 Wnvd~~r~~~TLsGHt----------dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-----------~S~ 304 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHT----------DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-----------GSQ 304 (459)
T ss_pred eeccchhhhhhhcccc----------cceeeehhhccccceeeccccchhhhhhhhhhheeccccc-----------ccc
Confidence 9999999999999998 7889999988877799999999999999998766655443 233
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
+.+++.+ ...++++. .|++|++||.++.......+. .+.|+++..+++|..|.+++.|.++.
T Consensus 305 cnDI~~~--~~~~~SgH---------~DkkvRfwD~Rs~~~~~sv~~-------gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 305 CNDIVCS--ISDVISGH---------FDKKVRFWDIRSADKTRSVPL-------GGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred ccceEec--ceeeeecc---------cccceEEEeccCCceeeEeec-------CcceeeEeeccCCeEEeeecCCCcee
Confidence 4555554 45666776 788999999999988777642 56999999999999999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCc--eeEEEE
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTP--IMNMSF 657 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~--v~~~~~ 657 (762)
+.|+.+......+.-..+.| ....+.+.|||++.|+|+|+ ||.|+||++.++++...+.....+ |++++|
T Consensus 367 viDlRt~eI~~~~sA~g~k~-------asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKC-------ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred eeecccccEEEEeecccccc-------ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence 99999988777663222222 34588999999999999999 999999999999999888765555 999999
Q ss_pred eCCCCEEEEEEcCCCCeEEEEE
Q 040987 658 VGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 658 s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+|.|..|++++.++. +.+|.
T Consensus 440 ~~sG~~Llsadk~~~--v~lW~ 459 (459)
T KOG0288|consen 440 NPSGSGLLSADKQKA--VTLWT 459 (459)
T ss_pred cCCCchhhcccCCcc--eEecC
Confidence 999999999999998 99993
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-28 Score=217.53 Aligned_cols=292 Identities=14% Similarity=0.206 Sum_probs=234.0
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEec--CCcEEEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCA--DNQVHLLK 422 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~i~d 422 (762)
.+.+......|.++.|+++|.++++++.|.++++||..+++... +......+..+.|......++.++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 35556667889999999999999999999999999999998864 4444556777888776677766666 88999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+.+.+.++.|.||. ..|.+++.+|-+..+++++.|++|++||++..++...+... .-.
T Consensus 87 l~dNkylRYF~GH~----------~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------~~p 144 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHK----------KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------GRP 144 (311)
T ss_pred eecCceEEEcCCCC----------ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC------------CCc
Confidence 99999999999998 78999999999999999999999999999977666555432 234
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC-ceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN-KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
..||+|+|-++|++. +...|++||++.-. .+...-. +..+. ....+.+.|||||++++.++..+.+++
T Consensus 145 i~AfDp~GLifA~~~---------~~~~IkLyD~Rs~dkgPF~tf~-i~~~~-~~ew~~l~FS~dGK~iLlsT~~s~~~~ 213 (311)
T KOG1446|consen 145 IAAFDPEGLIFALAN---------GSELIKLYDLRSFDKGPFTTFS-ITDND-EAEWTDLEFSPDGKSILLSTNASFIYL 213 (311)
T ss_pred ceeECCCCcEEEEec---------CCCeEEEEEecccCCCCceeEc-cCCCC-ccceeeeEEcCCCCEEEEEeCCCcEEE
Confidence 679999999999998 55699999998653 2222111 11233 568899999999999999999999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVG 659 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~ 659 (762)
.|.-+|.....+. .+ .....--....|+||++++.+|+ ||+|.+|++++|+.+..+++ +.+++.++.|+|
T Consensus 214 lDAf~G~~~~tfs-----~~---~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 214 LDAFDGTVKSTFS-----GY---PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred EEccCCcEeeeEe-----ec---cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC
Confidence 9999988665552 10 01111225789999999999998 89999999999999999988 688999999999
Q ss_pred CCCEEEEEEcCCCCeEEEEECCC
Q 040987 660 SSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.-.+++++ +.. +.+|=...
T Consensus 286 ~~~mf~sa--~s~--l~fw~p~~ 304 (311)
T KOG1446|consen 286 RYAMFVSA--SSN--LVFWLPDE 304 (311)
T ss_pred ceeeeeec--Cce--EEEEeccc
Confidence 76666666 444 88885543
No 76
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=220.09 Aligned_cols=309 Identities=15% Similarity=0.120 Sum_probs=224.0
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----ccCCCCCCeEEEEeCCCCCeEEEEec-CCcEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-----FLPRIGSPLLYFTESPDPSLSSISCA-DNQVH 419 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~ 419 (762)
+..+++|.+.|++++|+.||++|++++.|+.|++|+++..... ...-.-+..+.++|+||-+.+++... .+.++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3578899999999999999999999999999999999874431 11111235688999999988776655 45799
Q ss_pred EEEcCCceEEEEEccCC---CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 420 LLKMPSMEIIRSISGIK---LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
+|.+...+. ....-+. .....+..|.-.+..+-...++++|++++.|..|.+|++. |+.+..+...
T Consensus 159 vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn--------- 227 (420)
T KOG2096|consen 159 VYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN--------- 227 (420)
T ss_pred EEEeeeccc-CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc---------
Confidence 998753211 1111111 1112334455667778888889999999999999999998 7666665443
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC---CceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ---NKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
...-+..+.||+|+++++++ -.-.|++|.+--+ ........+.+.|| ...|..++|||+...+++.
T Consensus 228 -q~~n~~aavSP~GRFia~~g---------FTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 228 -QSSNYDAAVSPDGRFIAVSG---------FTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred -cccccceeeCCCCcEEEEec---------CCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEE
Confidence 34457789999999999998 4567999987422 21111222345899 9999999999999999999
Q ss_pred eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec-cccCce
Q 040987 574 SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG-ETLTPI 652 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~-~~~~~v 652 (762)
+.||+++|||++-......-+..--..........+....++.||+|+.||.+....+++|..++|+....++ .|...|
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~I 376 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTI 376 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCce
Confidence 9999999999864322211100000000111223444558999999999999988899999999998776663 488889
Q ss_pred eEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 653 MNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 653 ~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.+++|++||++++++++.- +++..
T Consensus 377 s~is~~~~g~~~atcGdr~---vrv~~ 400 (420)
T KOG2096|consen 377 SSISYSSDGKYIATCGDRY---VRVIR 400 (420)
T ss_pred eeEEecCCCcEEeeeccee---eeeec
Confidence 9999999999999998755 77775
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.4e-28 Score=256.01 Aligned_cols=309 Identities=20% Similarity=0.294 Sum_probs=245.1
Q ss_pred eccCcCeEEEEEcCCCcEEEEee--cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 278 LHHTKKLTVLAFHPTQRIVAAGD--VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
..+...|.++..+|||..+|+|+ .||.+++|+.+.--.-. ......-.+.+..+..|.+.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~------------------~~~~~~l~k~l~~m~~h~~s 71 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK------------------EEKNENLPKHLCTMDDHDGS 71 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchh------------------hhhhcccchhheeeccccCc
Confidence 34556799999999999999999 89999999864221000 00000123456778889999
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCC----------Cc---------eeccCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDT----------GK---------KKFLPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~----------~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
|.|+.|+|||++||+|++|+.|.+|+... |. ...+.+|...|..++|+|++.++++++.|+
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 99999999999999999999999999873 11 134677899999999999999999999999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
+|.+|+..+.+.+..+.+|. +.|..+.|.|-|+++|+-+.|++|++|++.+-.....+....... .
T Consensus 152 sViiwn~~tF~~~~vl~~H~----------s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~----~ 217 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLRGHQ----------SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES----P 217 (942)
T ss_pred eEEEEccccceeeeeeeccc----------ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC----C
Confidence 99999999999999999998 888999999999999999999999999977655544444332211 1
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-----CC---
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-----RR--- 568 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-----~~--- 568 (762)
....+..+.|||||++|++...- .+...++.|.+..+.+.-..+ -|| ..++.++.|+|. .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~-----n~~~~~~~IieR~tWk~~~~L-----vGH-~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAV-----NGGKSTIAIIERGTWKVDKDL-----VGH-SAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred CcceeeecccCCCcCeecchhhc-----cCCcceeEEEecCCceeeeee-----ecC-CCceEEEEeChHHhccccccCC
Confidence 15668999999999999997521 014568888888777655554 689 889999999982 11
Q ss_pred ---------eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 569 ---------AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 569 ---------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
.+|+|+.|++|.||.....+...... .-....|.+|+|+|||..|.+++ ||+|.+..++.
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~----------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH----------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCCCchhhhh----------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 67899999999999997666554431 22468999999999999999998 99999999876
Q ss_pred C
Q 040987 639 N 639 (762)
Q Consensus 639 ~ 639 (762)
.
T Consensus 357 ~ 357 (942)
T KOG0973|consen 357 K 357 (942)
T ss_pred H
Confidence 4
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=232.04 Aligned_cols=309 Identities=15% Similarity=0.158 Sum_probs=240.9
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
....+.+|+..|.++++.|.|.+|++|+.|.+|++||+..... ...+.....|.++.|++.|..|++.+.....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 3457788999999999999999999999999999999986543 2344556789999999999999999999999
Q ss_pred EEEEcCCceEEEEEccCCCC--CCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 419 HLLKMPSMEIIRSISGIKLP--CPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+++|-...+.....+|...- ......|-..+++.+|+|+.+ .+++++.||++++||+...+......... +..
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k----~~~ 314 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK----PAG 314 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec----cCC
Confidence 99999877666666554421 223344557889999999654 68899999999999998765433322211 111
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCC--ceEEEEEcCCCCeEEEE
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDA--GISAVAFHPNRRAAVSS 573 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~--~v~~~~~spd~~~l~~~ 573 (762)
+....++..+|+|||++||++. .||.|.+|+.........+. +-.+| .. .|++++||+||++|++-
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc---------~DGSIQ~W~~~~~~v~p~~~--vk~AH-~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGC---------LDGSIQIWDKGSRTVRPVMK--VKDAH-LPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred CcccCceeeecCCCcchhhhcc---------cCCceeeeecCCcccccceE--eeecc-CCCCceeEEEeccccchhhhc
Confidence 2256789999999999999999 89999999985443322221 23567 55 89999999999999999
Q ss_pred eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-------CCeEEEEeCCCCeEEEEec
Q 040987 574 SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-------ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-------d~~i~iwd~~~~~~~~~l~ 646 (762)
+.|+++++||++..+...... ..-.....-+.++||||.++|++|. .|.+++||..+.+.+..+.
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~--------tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVR--------TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred cCCCceeeeeccccccchhhh--------cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 999999999998765433221 0111234557899999999999984 2789999999999999988
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
-....|..+.|+|.=+.|..++.||. +++|=
T Consensus 455 i~~aSvv~~~WhpkLNQi~~gsgdG~--~~vyY 485 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLNQIFAGSGDGT--AHVYY 485 (641)
T ss_pred CCCceEEEEeecchhhheeeecCCCc--eEEEE
Confidence 77788999999998888999999998 88874
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-28 Score=239.76 Aligned_cols=278 Identities=18% Similarity=0.249 Sum_probs=239.3
Q ss_pred ceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceee
Q 040987 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFA 317 (762)
Q Consensus 238 v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~ 317 (762)
..-+.|+ ..+.||++....|++|+..++... .....+...|+++.|+++|.+||+|..+|.|.|||....+.
T Consensus 180 ~nlldWs-s~n~laValg~~vylW~~~s~~v~-----~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-- 251 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQSVYLWSASSGSVT-----ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-- 251 (484)
T ss_pred hhHhhcc-cCCeEEEEecceEEEEecCCCceE-----EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc--
Confidence 3456777 567889999999999999998854 44444588999999999999999999999999999876643
Q ss_pred cccccccccccccccCCCCcccCCccccceeeec-cccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee--ccCCCC
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW-HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK--FLPRIG 394 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~ 394 (762)
+..+.+ |...|-+++|. +..+.+|+.++.|..+|++..+.. .+..|.
T Consensus 252 ----------------------------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~ 301 (484)
T KOG0305|consen 252 ----------------------------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHR 301 (484)
T ss_pred ----------------------------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhccc
Confidence 356666 99999999997 668999999999999999987763 367788
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEee--cCceEE
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRA--ENYCIH 471 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~dg~i~ 471 (762)
..|..+.|++|++++++|+.|+.+.|||....++...+..|. ..|..++|+| ....||+|+ .|++|+
T Consensus 302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~----------aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT----------AAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc----------eeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 999999999999999999999999999998888889999888 8999999999 566788875 789999
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
+||..++..+..+.. ...|..+.|++..+-|+++... .++.|.||+..+.+....+ .
T Consensus 372 fwn~~~g~~i~~vdt-----------gsQVcsL~Wsk~~kEi~sthG~-------s~n~i~lw~~ps~~~~~~l-----~ 428 (484)
T KOG0305|consen 372 FWNTNTGARIDSVDT-----------GSQVCSLIWSKKYKELLSTHGY-------SENQITLWKYPSMKLVAEL-----L 428 (484)
T ss_pred EEEcCCCcEeccccc-----------CCceeeEEEcCCCCEEEEecCC-------CCCcEEEEeccccceeeee-----c
Confidence 999999988777655 5669999999999877777532 6679999999987666555 6
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
+| ...|..++++|||..+++|+.|.++++|++-+.
T Consensus 429 gH-~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 GH-TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CC-cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 89 899999999999999999999999999998764
No 80
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=7.7e-29 Score=220.48 Aligned_cols=298 Identities=17% Similarity=0.248 Sum_probs=243.2
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC------------Cc-------eeccCCCCCCeEEEEeCCCC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT------------GK-------KKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~------------~~-------~~~~~~~~~~v~~~~~s~~~ 406 (762)
...+..|..++.+.+|++||.++++|+.|..|++.|++. +. ...+..|..+|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 356788999999999999999999999999999999872 11 12356677899999999999
Q ss_pred CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
..|++++.|++|++||.......+.++.... ...|.++.|+|.|.+|++|.+...+++||+.+.+......
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan- 255 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQD--------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN- 255 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhc--------cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-
Confidence 9999999999999999986433333322221 1478999999999999999999999999999876543322
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
|.++|...|+++.+++.|++.++++ .||.|++||--+++++.++. .+|....|.+..|..+
T Consensus 256 ------Pd~qht~ai~~V~Ys~t~~lYvTaS---------kDG~IklwDGVS~rCv~t~~----~AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 256 ------PDDQHTGAITQVRYSSTGSLYVTAS---------KDGAIKLWDGVSNRCVRTIG----NAHGGSEVCSAVFTKN 316 (430)
T ss_pred ------cccccccceeEEEecCCccEEEEec---------cCCcEEeeccccHHHHHHHH----hhcCCceeeeEEEccC
Confidence 4455689999999999999999999 99999999999999888775 5786778999999999
Q ss_pred CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEE
Q 040987 567 RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~ 644 (762)
|+++.+.+.|..+++|++.++..+....... ..+....-+...|.....++..-. .+.++-||..++..+..
T Consensus 317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg------~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAG------TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred CeEEeecCCcceeeeeeecCCceEEEEecCC------cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 9999999999999999999998877653100 011122234566777778887776 68899999999866554
Q ss_pred e-ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 645 I-GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 645 l-~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+ -+|++.+..+.-||.+.-+++|+.|-. +++|-
T Consensus 391 ~slgHn~a~R~i~HSP~~p~FmTcsdD~r--aRFWy 424 (430)
T KOG0640|consen 391 LSLGHNGAVRWIVHSPVEPAFMTCSDDFR--ARFWY 424 (430)
T ss_pred cccCCCCCceEEEeCCCCCceeeecccce--eeeee
Confidence 4 379999999999999999999999998 99995
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.6e-28 Score=245.69 Aligned_cols=283 Identities=12% Similarity=0.163 Sum_probs=216.3
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccccc-----------cccccccc--------------C
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMN-----------LNLMNNEE--------------E 333 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-----------~~~~~~~~--------------~ 333 (762)
.|.+.|.++.||+||+|||+|+.|+.|+||.+...+.......... ........ +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 8999999999999999999999999999999876322111100000 00000000 0
Q ss_pred CCCcc-----cCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCC-CCC
Q 040987 334 RPGVR-----DNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESP-DPS 407 (762)
Q Consensus 334 ~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~-~~~ 407 (762)
...+. ..-..+++..+.||.+.|.++.|+.++ +|++++.|.+|++|++...+++....|..-|+|++|+| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence 00100 011356778899999999999999765 89999999999999999999999999999999999999 789
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
++++|+-|+.++||++...+...-...+ ..|++++|.|||+..++|+.+|.+++|+....+........
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-----------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR-----------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh-----------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 9999999999999999977766554433 58899999999999999999999999999988777766665
Q ss_pred cccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 488 ERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
.+...... ...|+.+.|.|... .+++.+ .|..|+|||.++...+..++.. +....-....|+.|
T Consensus 493 ~~~~Kk~~--~~rITG~Q~~p~~~~~vLVTS---------nDSrIRI~d~~~~~lv~KfKG~----~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 493 LHNKKKKQ--GKRITGLQFFPGDPDEVLVTS---------NDSRIRIYDGRDKDLVHKFKGF----RNTSSQISASFSSD 557 (712)
T ss_pred eccCcccc--CceeeeeEecCCCCCeEEEec---------CCCceEEEeccchhhhhhhccc----ccCCcceeeeEccC
Confidence 44332222 22799999987543 344444 8899999999888777766531 21233456789999
Q ss_pred CCeEEEEeCCCcEEEEEccccc
Q 040987 567 RRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
|++|+++++|..|++|++....
T Consensus 558 gk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCEEEEeecCceEEEEeCCCCc
Confidence 9999999999999999985443
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.4e-28 Score=221.42 Aligned_cols=290 Identities=16% Similarity=0.193 Sum_probs=233.6
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC---CCeEEEEecCCcEEEEEcCCceE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD---PSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
|.+.|.++... ++.|++++.||.+++||..........+|.+++.+++|--. ...+++++.|.++++|..+.++.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 88888888876 67999999999999999987777889999999998887432 34699999999999999887654
Q ss_pred E----EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC--ceeeEEee-------------cc
Q 040987 429 I----RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR--GISEVQVC-------------ER 489 (762)
Q Consensus 429 ~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~-------------~~ 489 (762)
. ..-.||. ..|.++...++|..+++++.|.+|.+|+..+.. ........ ..
T Consensus 182 ~~~~~~~~~GHk----------~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 182 KVKALKVCRGHK----------RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred hhhHHhHhcccc----------cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 3 2233655 889999999999999999999999999933221 11110000 00
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
......+|..+|.++.|++ ...+.+++ .|.+|+.||+.++.....+.+ ...++++..+|..++
T Consensus 252 P~vtl~GHt~~Vs~V~w~d-~~v~yS~S---------wDHTIk~WDletg~~~~~~~~-------~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD-ATVIYSVS---------WDHTIKVWDLETGGLKSTLTT-------NKSLNCISYSPLSKL 314 (423)
T ss_pred ceEEecccccceeeEEEcC-CCceEeec---------ccceEEEEEeecccceeeeec-------CcceeEeecccccce
Confidence 0012244689999999998 66777777 899999999999998877754 668999999999999
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcE-EEEEc-CCeEEEEeCCCCe-EEEEec
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSV-LAVAA-ETVITLWDPDRNV-LVAVIG 646 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~-la~~~-d~~i~iwd~~~~~-~~~~l~ 646 (762)
|++|+.|..+++||.+++.-.. ....+.+|...|.++.|+|...+ |++|+ |+++++||+++.+ .+..+.
T Consensus 315 l~~gssdr~irl~DPR~~~gs~--------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGDGSV--------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeecCCCCceeecCCCCCCCce--------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999999999999998874322 22346689999999999997765 56667 9999999999987 899999
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
+|.+.|.++.|.. +..|++||.|.+ |+++.-.
T Consensus 387 ~h~DKvl~vdW~~-~~~IvSGGaD~~--l~i~~~~ 418 (423)
T KOG0313|consen 387 GHNDKVLSVDWNE-GGLIVSGGADNK--LRIFKGS 418 (423)
T ss_pred cCCceEEEEeccC-CceEEeccCcce--EEEeccc
Confidence 9999999999986 679999999998 9988643
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.6e-28 Score=238.55 Aligned_cols=274 Identities=18% Similarity=0.237 Sum_probs=235.7
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc-C
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI-GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG-I 435 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~ 435 (762)
-+.|+.. +.|+.+. ...|++|+..+++...+... ...|+++.|+++|.+|++|..+|.|.|||..+.+.++.+.+ |
T Consensus 182 lldWss~-n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWSSA-NVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred HhhcccC-CeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 3577743 4566554 46899999999997655554 78999999999999999999999999999999888888888 5
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 515 (762)
. ..|.+++|. +..+.+|+.++.|..+|++..+..... ...| ...|..+.|++|++++|+
T Consensus 260 ~----------~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~---~~~H------~qeVCgLkws~d~~~lAS 318 (484)
T KOG0305|consen 260 A----------SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST---LQGH------RQEVCGLKWSPDGNQLAS 318 (484)
T ss_pred C----------ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh---hhcc------cceeeeeEECCCCCeecc
Confidence 5 789999999 568999999999999999987665541 2333 788999999999999999
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEe--CCCcEEEEEccccccccc
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSS--YGGDFKVWICNDELQQKD 592 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~--~dg~i~iwd~~~~~~~~~ 592 (762)
++ .|+.+.|||.........+ ..| ...|..++|+| ...+||+|+ .|+.|++||..++..+..
T Consensus 319 Gg---------nDN~~~Iwd~~~~~p~~~~-----~~H-~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 319 GG---------NDNVVFIWDGLSPEPKFTF-----TEH-TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred CC---------CccceEeccCCCccccEEE-----ecc-ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 99 8999999999777666655 578 99999999999 566888865 689999999999988877
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE-c--CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-A--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
.. ....|..+.|++..+-|+++ + ++.|.||+..+.+.+..+.+|...|..+++||||..+++++.
T Consensus 384 vd------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 384 VD------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred cc------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 62 47889999999998777765 3 789999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEECCCC
Q 040987 670 GSKPQLSVWNMSKL 683 (762)
Q Consensus 670 d~~~~v~vwd~~~~ 683 (762)
|.+ +++|++-+.
T Consensus 452 DET--lrfw~~f~~ 463 (484)
T KOG0305|consen 452 DET--LRFWNLFDE 463 (484)
T ss_pred cCc--EEeccccCC
Confidence 999 999998764
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-26 Score=208.65 Aligned_cols=292 Identities=13% Similarity=0.159 Sum_probs=230.4
Q ss_pred eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCC
Q 040987 105 LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKP 184 (762)
Q Consensus 105 ~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 184 (762)
++.+.+..-.+.|+++.|+++| .+|++++.|.++++||..+|++++++..+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G-------~~litss~dDsl~LYd~~~g~~~~ti~skk--------------------- 56 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDG-------LLLITSSEDDSLRLYDSLSGKQVKTINSKK--------------------- 56 (311)
T ss_pred ccccccccCCCceeEEEecCCC-------CEEEEecCCCeEEEEEcCCCceeeEeeccc---------------------
Confidence 3455666678899999999999 578899999999999999999999886543
Q ss_pred CceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-EEE--eCCeEEEE
Q 040987 185 PKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-GIR--KQRKLLIW 261 (762)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~--~~~~i~iw 261 (762)
-.+..++|......+ .++ .|.+|+..
T Consensus 57 ---------------------------------------------------yG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 57 ---------------------------------------------------YGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ---------------------------------------------------ccccEEEEecCCceEEEccCCCCCceEEE
Confidence 122333443333333 333 47899999
Q ss_pred EccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCC
Q 040987 262 KVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDND 341 (762)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (762)
++.+.+.. +.+.+|...|++++.+|-+..+++++.|++|++||++..+.
T Consensus 86 sl~dNkyl-----RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-------------------------- 134 (311)
T KOG1446|consen 86 SLHDNKYL-----RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-------------------------- 134 (311)
T ss_pred EeecCceE-----EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--------------------------
Confidence 99999876 89999999999999999889999999999999999975432
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---ec--cC-CCCCCeEEEEeCCCCCeEEEEecC
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KF--LP-RIGSPLLYFTESPDPSLSSISCAD 415 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~--~~-~~~~~v~~~~~s~~~~~l~~~~~d 415 (762)
...+ +...-..++|.|+|-.+|.+.....|++||++.-.. .. +. ........+.|||||++++.++..
T Consensus 135 ----qg~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 135 ----QGLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred ----ceEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC
Confidence 1122 222234578999999999888877999999987533 11 11 334578899999999999999999
Q ss_pred CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 416 NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+.+++.|.-+|..+.++.++.... ..-.+.+|+||++++++++.||+|.+|+++++..+..+....
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~~~-------~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~------- 274 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPNAG-------NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN------- 274 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccCCC-------CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-------
Confidence 999999999999999998877432 223678999999999999999999999999998877765531
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
..++.++.|+|.-..+++++ ..+.+|=....
T Consensus 275 --~~~~~~~~fnP~~~mf~sa~-----------s~l~fw~p~~~ 305 (311)
T KOG1446|consen 275 --GGPVSCVRFNPRYAMFVSAS-----------SNLVFWLPDED 305 (311)
T ss_pred --CCCccccccCCceeeeeecC-----------ceEEEEecccc
Confidence 56688999999988888876 47888866543
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=246.10 Aligned_cols=283 Identities=17% Similarity=0.207 Sum_probs=234.8
Q ss_pred eeeecC-cccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEee-ecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 66 KMIRGG-RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS-LEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 66 ~~~~~h-~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~-l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
..+.+| ...+.+ ..|. +.+++++. +++|.+||..++..+.+ +.||.+.|++++|...+ .+|++|+.|
T Consensus 201 ~~~~~~~~~~~~~-~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-------~~lvsgS~D 270 (537)
T KOG0274|consen 201 KVLLGTDDHVVLC-LQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-------DKLVSGSTD 270 (537)
T ss_pred eeecccCcchhhh-heee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-------CEEEEEecC
Confidence 344444 445555 8888 45777777 69999999999999888 99999999999999855 688899999
Q ss_pred CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
.+++|||..+|+|.+.+.+|. .+.++.+.. +.. ++|+.|.+|++|++
T Consensus 271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-----------------~~~---------------~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDP-----------------FLL---------------VSGSRDNTVKVWDV 318 (537)
T ss_pred CcEEeEecCCCcEEEEecCCCceEEEEEccC-----------------ceE---------------eeccCCceEEEEec
Confidence 999999999999999999987 555553200 000 67899999999999
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
.++.++ ..+.+|..+|.++.+. +.+++ ++.|+.|.+||+.++++. +.+.+|...|.++.+.+. ..+++|+
T Consensus 319 ~n~~~l-~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl-----~sl~gH~~~V~sl~~~~~-~~~~Sgs 389 (537)
T KOG0274|consen 319 TNGACL-NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL-----KSLSGHTGRVYSLIVDSE-NRLLSGS 389 (537)
T ss_pred cCcceE-EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee-----eeecCCcceEEEEEecCc-ceEEeee
Confidence 999999 5555699999999999 55665 568999999999988877 888999999999988765 7899999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
.|+.|++||+.+.. +++..+.+|..-+..+.+ .+++|++++.|++|++|
T Consensus 390 ~D~~IkvWdl~~~~-----------------------------~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKR-----------------------------KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLW 438 (537)
T ss_pred eccceEeecCCchh-----------------------------hhhhhhcCCccccccccc--ccceeEeccccccEEEe
Confidence 99999999997662 356788999988876665 56799999999999999
Q ss_pred ecCCCceeccCC--CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 381 QLDTGKKKFLPR--IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 381 d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
|..++++..... +...+..+++. ...+++++.++.+.+||+++++..+.+
T Consensus 439 D~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 439 DAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999865443 34678888776 467888889999999999999888876
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.5e-29 Score=226.33 Aligned_cols=294 Identities=16% Similarity=0.225 Sum_probs=238.5
Q ss_pred eeeeeeeccCcCeEEEEEcCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 272 VMRKITLHHTKKLTVLAFHPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
+....+.+|.++|.|++=+|.. ..+|+|+.||.|++||+... .+...+.
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------------------------------~~~~~f~ 106 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------------------------------ECIRTFK 106 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh------------------------------hhhheee
Confidence 3335567999999999999987 78999999999999999655 3567899
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
.|.+.|..++++. ..++++++|.+|+.|.++.. ..........+..+..+..+..+++++ ..|.|||.....++.
T Consensus 107 AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 107 AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVS 181 (433)
T ss_pred cccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeeeccccccccccccccccccccC--ceeeecccccCCccc
Confidence 9999999999976 57889999999999998763 333344445566666666666777654 469999999888888
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.++... ..+.++.|+|-. ..|+++..|+.|.+||++++.++..+... ..-..++|+|+
T Consensus 182 smswG~----------Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----------mRTN~IswnPe 240 (433)
T KOG0268|consen 182 SMSWGA----------DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-----------MRTNTICWNPE 240 (433)
T ss_pred eeecCC----------CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-----------ccccceecCcc
Confidence 887765 678999999954 46777779999999999999998887764 34678999998
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
+-.+++++ +|..++.||++........ ..+| ...|.++.|||.|+-+++||.|.+|+||..+.+..
T Consensus 241 afnF~~a~---------ED~nlY~~DmR~l~~p~~v----~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 241 AFNFVAAN---------EDHNLYTYDMRNLSRPLNV----HKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ccceeecc---------ccccceehhhhhhcccchh----hccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 87888887 8999999999876554333 4688 89999999999999999999999999999987765
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l 645 (762)
..... ...-..|.++.||.|.+++++|+ |+.|++|.....+.+..+
T Consensus 307 RdiYh----------tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 307 RDIYH----------TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred hhhhh----------HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 54431 11246789999999999999999 899999988766555444
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=228.13 Aligned_cols=288 Identities=17% Similarity=0.169 Sum_probs=243.9
Q ss_pred eeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEE
Q 040987 230 VTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIW 308 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 308 (762)
.+..|.+.+..+.|-++...|+ .|.|..|.+|+....+. .....+.+..+.|+++.|.++++++++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---hhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 4556899999999999988887 56899999999988774 2336677888899999999999999999999999999
Q ss_pred eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee
Q 040987 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~ 388 (762)
++... +...++.+|.+.|+++.|......+++|+.|.+|++||+....+.
T Consensus 247 nvd~~------------------------------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 247 NVDSL------------------------------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred eccch------------------------------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 98665 345789999999999999887777999999999999999998886
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY 468 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 468 (762)
...-....+..++.+ ...++++..|+.|++||.++..+......+ +.|.++..++++..|.+++.|.
T Consensus 297 kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-----------g~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 297 KTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-----------GRVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred ccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-----------cceeeEeeccCCeEEeeecCCC
Confidence 655556666667665 567888888999999999999888887765 6899999999999999999999
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
++.+.|+++......+....... ....+.+.|||++.|+|+|+ .||.|+||++.+++....+..
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~------asDwtrvvfSpd~~YvaAGS---------~dgsv~iW~v~tgKlE~~l~~- 427 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKC------ASDWTRVVFSPDGSYVAAGS---------ADGSVYIWSVFTGKLEKVLSL- 427 (459)
T ss_pred ceeeeecccccEEEEeecccccc------ccccceeEECCCCceeeecc---------CCCcEEEEEccCceEEEEecc-
Confidence 99999999877655554322111 34588999999999999999 889999999999998877753
Q ss_pred eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 549 VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
.+....|++++|+|.|..|++++.++.+.+|
T Consensus 428 ---s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 428 ---STSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ---CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 3313379999999999999999999999998
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.1e-28 Score=244.83 Aligned_cols=215 Identities=13% Similarity=0.179 Sum_probs=175.5
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.|..+.||.++ +|++++.|.+|++|++.... ++..| .|.+
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~------------------------------CL~~F-~Hnd 410 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKE------------------------------CLKVF-SHND 410 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCcc------------------------------eeeEE-ecCC
Confidence 5677999999999999765 89999999999999997654 33444 4999
Q ss_pred ceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
-|+|++|+| |.+++++|+-|+.++||++...+.........-|++++|.|||+..++|+.+|.+++|+....+....+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 999999999 7799999999999999999999888888888999999999999999999999999999999877766543
Q ss_pred cCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
-+...-. ...+ ..|+++.|.|. ...+++.+.|..|+|||.++...+..+..... ...-....|+.||++
T Consensus 491 I~~~~~K-k~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n--------~~SQ~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 491 IRLHNKK-KKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN--------TSSQISASFSSDGKH 560 (712)
T ss_pred EeeccCc-cccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc--------CCcceeeeEccCCCE
Confidence 3221111 1112 37999999984 34588889999999999988777776654433 223456789999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
|++++ +|..|++|+.....
T Consensus 561 IVs~s---------eDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 561 IVSAS---------EDSWVYIWKNDSFN 579 (712)
T ss_pred EEEee---------cCceEEEEeCCCCc
Confidence 99999 89999999986544
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.3e-27 Score=221.91 Aligned_cols=307 Identities=16% Similarity=0.181 Sum_probs=239.4
Q ss_pred EeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCc
Q 040987 107 ISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186 (762)
Q Consensus 107 ~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 186 (762)
...+..|.-+|+||+++|++ ++.++++.|++|.-|++.+|+..+.+-....+...
T Consensus 135 ~~~~~~H~~s~~~vals~d~-------~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~------------------ 189 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-------KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS------------------ 189 (479)
T ss_pred ceeeccccCcceEEEeeccc-------cceeecCCCcceeeeehhcCcccccccccchhhhh------------------
Confidence 56677899999999999999 78999999999999999999866332111000000
Q ss_pred eEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccC
Q 040987 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPD 265 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~ 265 (762)
.+.........|...+.+++.|+||+|||++ .|..|.||+..+
T Consensus 190 ------------------------------------~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t 233 (479)
T KOG0299|consen 190 ------------------------------------HGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT 233 (479)
T ss_pred ------------------------------------ccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcc
Confidence 0111101113788999999999999999966 688899999999
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADL 345 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (762)
.+.. +.+.+|.+.|.+++|-.....|++++.|+.|++|+++.. ..
T Consensus 234 ~ehv-----~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~------------------------------s~ 278 (479)
T KOG0299|consen 234 LEHV-----KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL------------------------------SY 278 (479)
T ss_pred cchh-----hcccccccceeeeeeecCccceeeeecCCceEEEehhHh------------------------------HH
Confidence 9876 668899999999999988889999999999999998544 34
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+.++.+|.+.|..+.-..-++.+-+|+.|+++++|++.......+..+.+.+.|++|-. ...+++|+.+|.|.+|++..
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecc
Confidence 57889999999999888777777777799999999997666667777888899999854 46788999999999999999
Q ss_pred ceEEEEEccCCCCCCC--CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 426 MEIIRSISGIKLPCPL--PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.+++.+.......... +..++.+|++++..|...++++|+.+|.|++|-+..+-....+..... . .+.|+.
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~------~GfVNs 430 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-L------VGFVNS 430 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-c------ccEEEE
Confidence 8888776432221111 112224899999999999999999999999999988732222111111 1 677999
Q ss_pred EEEecCCCeEEEEe
Q 040987 504 VALSQDGSLMSTVD 517 (762)
Q Consensus 504 ~~~sp~g~~l~~~~ 517 (762)
++|+++|+.++++.
T Consensus 431 l~f~~sgk~ivagi 444 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGI 444 (479)
T ss_pred EEEccCCCEEEEec
Confidence 99999999887775
No 90
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=2.9e-26 Score=223.23 Aligned_cols=193 Identities=13% Similarity=0.207 Sum_probs=144.1
Q ss_pred ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCcee
Q 040987 465 AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
+..|.|-||+++....+..-....- -....|+++.|.| |...||+++ +|+.|++|.+..+....
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l------~Ngt~vtDl~WdPFD~~rLAVa~---------ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGL------FNGTLVTDLHWDPFDDERLAVAT---------DDGQINLWRLTANGLPE 664 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccccc------ccCceeeecccCCCChHHeeecc---------cCceEEEEEeccCCCCc
Confidence 4467888888875433221110000 0156699999999 778999998 89999999998765433
Q ss_pred EE--EEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC
Q 040987 544 TL--STIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 544 ~~--~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 620 (762)
.. ...++.+| ...|+++.|+| -...|++++.|-+|++||+.+.+....+ .+|.+.|..++|||||
T Consensus 665 ~~~tPe~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----------~gHtdqIf~~AWSpdG 732 (1012)
T KOG1445|consen 665 NEMTPEKILTIH-GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----------VGHTDQIFGIAWSPDG 732 (1012)
T ss_pred ccCCcceeeecc-cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----------ccCcCceeEEEECCCC
Confidence 22 22245788 89999999999 4568999999999999999988776554 4799999999999999
Q ss_pred cEEEEEc-CCeEEEEeCCCCeE-EEEecccc-CceeEEEEeCCCCEEEEEEcCCCC--eEEEEECCCCc
Q 040987 621 SVLAVAA-ETVITLWDPDRNVL-VAVIGETL-TPIMNMSFVGSSEYLVATSWGSKP--QLSVWNMSKLS 684 (762)
Q Consensus 621 ~~la~~~-d~~i~iwd~~~~~~-~~~l~~~~-~~v~~~~~s~dg~~l~s~~~d~~~--~v~vwd~~~~~ 684 (762)
+.+|+.. ||+|++|+..+++. +..-.+.. ..-..+.|.-||++++..+.|... +|.+||..+..
T Consensus 733 r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 733 RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 9999998 99999999987743 33322222 123457888899999999888742 58888877654
No 91
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2e-27 Score=226.04 Aligned_cols=311 Identities=14% Similarity=0.153 Sum_probs=236.3
Q ss_pred eeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEE
Q 040987 230 VTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIW 308 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 308 (762)
.+.+|+..|.++++.|.|-.+++| .|..|++||+........-.+.+.......|++++|++.|..+++.+.....+|+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 566788899999999999999865 7999999999877654334455666677789999999999988888888899999
Q ss_pred eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCce
Q 040987 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKK 387 (762)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~ 387 (762)
|-.+.+..+...+..... -+..-+||...+++.+|+|+. ..+++++.||++++||+...+.
T Consensus 242 DRdG~~~~e~~KGDQYI~------------------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIR------------------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred ccCCceeeeeeccchhhh------------------hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 987765544332222211 124557899999999999975 5688999999999999987654
Q ss_pred e-c------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE---EEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 388 K-F------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI---IRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 388 ~-~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+ . .....-+++.++|++||++||+|+.||.|.+|+...... ...-..|.. ...|+++.||+|
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~--------g~~Itsi~FS~d 375 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP--------GQDITSISFSYD 375 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC--------CCceeEEEeccc
Confidence 2 1 122234789999999999999999999999999865322 222233331 138999999999
Q ss_pred CCEEEEeecCceEEEEEcCCCCceee-EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEe
Q 040987 458 GGLVALRAENYCIHFYSLLDDRGISE-VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVS 536 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~ 536 (762)
|++|++-+.|+++++||++..+.... ...... ...-+.++|||+.++|++|....... ..+.+.+||.
T Consensus 376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t--------~~~~tdc~FSPd~kli~TGtS~~~~~---~~g~L~f~d~ 444 (641)
T KOG0772|consen 376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT--------PFPGTDCCFSPDDKLILTGTSAPNGM---TAGTLFFFDR 444 (641)
T ss_pred cchhhhccCCCceeeeeccccccchhhhcCCCc--------cCCCCccccCCCceEEEecccccCCC---CCceEEEEec
Confidence 99999999999999999987654322 211111 34467889999999999997432222 4568999999
Q ss_pred cCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 537 GTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 537 ~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
.+...++.+.. . ...|..+.|+|.-+.|..++.||++++|=
T Consensus 445 ~t~d~v~ki~i-----~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 445 MTLDTVYKIDI-----S-TASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cceeeEEEecC-----C-CceEEEEeecchhhheeeecCCCceEEEE
Confidence 98888777642 2 55788999999988899999999999863
No 92
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-26 Score=225.70 Aligned_cols=573 Identities=12% Similarity=0.089 Sum_probs=319.4
Q ss_pred ceeEEEEecCCCeEEEEecCCcceee------eecCcccccCCceeecCCC-EEEEEeCCEEEEEEcccceEEeeecCCc
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKM------IRGGRSYVSSPPAFSNDVK-RLLVCTSNTVSIFSTSTGLQISSLEGHK 114 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~------~~~h~~~v~~~~~~s~dg~-~la~~~~~~i~iwd~~~~~~~~~l~~h~ 114 (762)
...+||+++.|..|++|.++.+.... ..||.+.+.-++.|.|..+ .|+++..|.++|||+.+++.+..+.+|.
T Consensus 91 ~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~ 170 (1012)
T KOG1445|consen 91 ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHT 170 (1012)
T ss_pred chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCc
Confidence 46799999999999999999433322 3666665444499998543 6777778999999999999999999999
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCC-CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEe
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFS-VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSV 193 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (762)
..|.+..|+.|| ++|++++.|+.|+|+|.+ .++.++..+.|..+.... +++...
T Consensus 171 d~vQSa~WseDG-------~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsR------------------v~w~Gn 225 (1012)
T KOG1445|consen 171 DKVQSADWSEDG-------KLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSR------------------VLWAGN 225 (1012)
T ss_pred hhhhccccccCC-------ceEeeecCCcceEEeCCccCCCccccccccccchhhe------------------eeeccc
Confidence 999999999999 799999999999999987 467788888776543321 222221
Q ss_pred eeccccCcCCccCCCCCCccccEEEEecCCcc-ccceeeeccCCCceEEEECCCCCEEEE-E-eCCeEEEEEccCchhhh
Q 040987 194 EDTRETTKSHKKEPRPNTMNGRICKCNLTESR-LAGGVTLAEMKEPQVITISSSGKYFGI-R-KQRKLLIWKVPDVEAER 270 (762)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~spdg~~la~-~-~~~~i~iwd~~~~~~~~ 270 (762)
-.....++ ...-.-..|++||..... .++......+..+.---|.||.++|.. | .+.++..+.+...+...
T Consensus 226 ~~rlisTG------F~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyL 299 (1012)
T KOG1445|consen 226 WERLISTG------FTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYL 299 (1012)
T ss_pred hhhhhhcc------cchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcch
Confidence 11111111 222345689999987643 444555666778888899999998864 3 56677777766443210
Q ss_pred hee-------------------eeeeeccCcCeEEE------------------EEc----CCC----------cEEEEe
Q 040987 271 VVM-------------------RKITLHHTKKLTVL------------------AFH----PTQ----------RIVAAG 299 (762)
Q Consensus 271 ~~~-------------------~~~~~~~~~~v~~~------------------~~s----p~~----------~~l~~~ 299 (762)
... .....+.-..|..+ .|+ |+. .++.
T Consensus 300 s~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWln-- 377 (1012)
T KOG1445|consen 300 SHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLN-- 377 (1012)
T ss_pred hhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceec--
Confidence 000 00000000000000 011 000 0000
Q ss_pred ecCCeEEEEeccCCce-------------e---------------ec--ccccc-cccccccccCCCCcc----------
Q 040987 300 DVTGRILIWRGFGDRT-------------F---------------AT--NDNKM-NLNLMNNEEERPGVR---------- 338 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~-------------~---------------~~--~~~~~-~~~~~~~~~~~~~~~---------- 338 (762)
+.+..+.--.+.-.+. + .. +.+.. .+.......+.+.+.
T Consensus 378 G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~ 457 (1012)
T KOG1445|consen 378 GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDY 457 (1012)
T ss_pred CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcc
Confidence 0001111111100000 0 00 00000 000000000000000
Q ss_pred ---c-----------------CC------ccccceeeeccc----ccee-----EEEEe---c-------------CCCE
Q 040987 339 ---D-----------------ND------DADLCTTWHWHP----SEVS-----VLIFS---S-------------DGAY 367 (762)
Q Consensus 339 ---~-----------------~~------~~~~~~~~~~h~----~~v~-----~~~~s---~-------------~g~~ 367 (762)
. .. ..+......... +.+. ..+|- | ....
T Consensus 458 ~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v 537 (1012)
T KOG1445|consen 458 RPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRV 537 (1012)
T ss_pred cccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccc
Confidence 0 00 000000000000 0000 01110 0 0000
Q ss_pred EEEEecC------CeEEEEecCCCceeccCCCCC---------CeEEEEeCCCCCeEEE--EecCCcEEEEEcCC-ceEE
Q 040987 368 LYSGGKE------GVLVVWQLDTGKKKFLPRIGS---------PLLYFTESPDPSLSSI--SCADNQVHLLKMPS-MEII 429 (762)
Q Consensus 368 l~s~~~d------g~i~~wd~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~--~~~d~~i~i~d~~~-~~~~ 429 (762)
..+.+.. |.+.-|.-..|..-....|-. +-.+=-|..+..++++ ++..|.|-||+++. |++.
T Consensus 538 ~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLP 617 (1012)
T KOG1445|consen 538 PLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLP 617 (1012)
T ss_pred cccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCC
Confidence 0011100 111111111111100000000 0111123344555554 34578999999875 2221
Q ss_pred EE-EccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 430 RS-ISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 430 ~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.. +.+.. -...|+.+.|.| |...|+++++||.|++|.+..+............ ...|...|+.+.|+
T Consensus 618 Dgv~p~l~--------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~---lt~h~eKI~slRfH 686 (1012)
T KOG1445|consen 618 DGVMPGLF--------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI---LTIHGEKITSLRFH 686 (1012)
T ss_pred cccccccc--------cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee---eecccceEEEEEec
Confidence 11 11111 015789999999 7889999999999999999876543222111111 11237789999999
Q ss_pred cC-CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 508 QD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 508 p~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
|= ...|++++ .|.+|++||+.+.+....+ .+| .+.|.+++|||||+.+|+.+.||++++|+.++
T Consensus 687 PLAadvLa~as---------yd~Ti~lWDl~~~~~~~~l-----~gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 687 PLAADVLAVAS---------YDSTIELWDLANAKLYSRL-----VGH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred chhhhHhhhhh---------ccceeeeeehhhhhhhhee-----ccC-cCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 94 56788888 8899999999998877666 689 99999999999999999999999999999987
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C----CeEEEEeCCCCe--EEEE--eccccCceeEEEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E----TVITLWDPDRNV--LVAV--IGETLTPIMNMSF 657 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d----~~i~iwd~~~~~--~~~~--l~~~~~~v~~~~~ 657 (762)
++...... .......--.+.|.-||+++++.+ | ..|.+||.++-. .+.+ +..... +.--.+
T Consensus 752 ~e~pv~Eg---------~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~Y 821 (1012)
T KOG1445|consen 752 REQPVYEG---------KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHY 821 (1012)
T ss_pred CCCccccC---------CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccc
Confidence 76544331 001123334678888999988765 4 679999987642 3322 221111 222335
Q ss_pred eCCCC-EEEEEEcCCCCeEEEEECCCCce
Q 040987 658 VGSSE-YLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 658 s~dg~-~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
.+|.. +++++-.|.. |.+|.+-..+.
T Consensus 822 D~Ds~~lfltGKGD~~--v~~yEv~~esP 848 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKGDRF--VNMYEVIYESP 848 (1012)
T ss_pred cCCCceEEEecCCCce--EEEEEecCCCc
Confidence 55654 4555656666 99998865443
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.4e-27 Score=245.74 Aligned_cols=291 Identities=15% Similarity=0.215 Sum_probs=230.6
Q ss_pred cccceeEEEEecCCCEEEEEe--cCCeEEEEecCCCc-------------eeccCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 352 HPSEVSVLIFSSDGAYLYSGG--KEGVLVVWQLDTGK-------------KKFLPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~--~dg~i~~wd~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
+...|.++..+|||..+++|+ .|+.+++|+.+.-- .-....|.+.|.|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345689999999999999999 88999999865311 123456788999999999999999999999
Q ss_pred cEEEEEcCC------------------ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 417 QVHLLKMPS------------------MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 417 ~i~i~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
.|.||+... .+....+.+|. +.|..++|+|++.++++++.|++|.+||..+.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~----------~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD----------SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCC----------CccceeccCCCccEEEEecccceEEEEccccc
Confidence 999999872 13556666766 88999999999999999999999999999988
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee-cCCCCCc
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY-EPHRDAG 557 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~h~~~~ 557 (762)
+.+..+.. | ...|..+.|.|-|+|||+-+ .|++|++|+..+......+..... .+- ...
T Consensus 162 ~~~~vl~~----H------~s~VKGvs~DP~Gky~ASqs---------dDrtikvwrt~dw~i~k~It~pf~~~~~-~T~ 221 (942)
T KOG0973|consen 162 ELLKVLRG----H------QSLVKGVSWDPIGKYFASQS---------DDRTLKVWRTSDWGIEKSITKPFEESPL-TTF 221 (942)
T ss_pred eeeeeeec----c------cccccceEECCccCeeeeec---------CCceEEEEEcccceeeEeeccchhhCCC-cce
Confidence 65555433 3 77799999999999999999 999999999777554444332111 111 345
Q ss_pred eEEEEEcCCCCeEEEEeCC----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCC--------C-----
Q 040987 558 ISAVAFHPNRRAAVSSSYG----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSAD--------G----- 620 (762)
Q Consensus 558 v~~~~~spd~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d--------g----- 620 (762)
...+.|||||++|++...= .++.|.+-. .|.+...+-+|..++.+++|+|. |
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-----------tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-----------TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecC-----------CceeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 7889999999999987431 234454443 66666667789999999999981 1
Q ss_pred c----EEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 621 S----VLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 621 ~----~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
. .+|+|+ |++|.||.....+++..... ....|.+++|+|||..|+.+|.||+ |.+...+..++
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt--V~~i~Fee~El 359 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT--VALIHFEEKEL 359 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe--EEEEEcchHHh
Confidence 1 567788 99999999988888776532 3456999999999999999999998 99999887654
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.2e-26 Score=203.57 Aligned_cols=282 Identities=17% Similarity=0.223 Sum_probs=221.0
Q ss_pred eeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 276 ITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 276 ~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
+.....+.|.+++||| ...++++++.||+||+|+++....+. -+....|.+
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------------~ka~~~~~~ 73 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------------------PKAQQSHDG 73 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCccc----------------------------chhhhccCC
Confidence 3344567899999999 55567789999999999996632211 145567999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCC--eEEEEecCCcEEEEEcCCceEEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPS--LSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+|.+++|+.||..+++|+.|+++++||+.+++...+..|..+|..+.|-+... .|++|+.|.+++.||.+...++.++
T Consensus 74 PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 74 PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 99999999999999999999999999999999999999999999999977655 8999999999999999998888887
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
.-.. .+.++..- ..+++++..+..|.+|+++++........... ...+++++..+|...
T Consensus 154 ~LPe-----------RvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpL--------k~Q~R~va~f~d~~~ 212 (347)
T KOG0647|consen 154 QLPE-----------RVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPL--------KWQTRCVACFQDKDG 212 (347)
T ss_pred eccc-----------eeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcc--------cceeeEEEEEecCCc
Confidence 6443 44444433 34788888999999999977643322211111 566899999999998
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCC--CceeEEEEEeecCCC---CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQ--NKEFTLSTIVYEPHR---DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~h~---~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
.|.|+ -+|.+.+..+..+ +..+.++.....+.. --.|++++|+|.-..|++++.||++.+||-+..
T Consensus 213 ~alGs---------iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 213 FALGS---------IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eEeee---------ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 89998 7789999988876 333444332111100 125788999999999999999999999999877
Q ss_pred cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 588 LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
..+...+ .+..+|++..|+.+|.++|.+
T Consensus 284 ~kLk~s~-----------~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 284 TKLKTSE-----------THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred hhhhccC-----------cCCCccceeEecCCCCEEEEE
Confidence 6666542 578999999999999999876
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.2e-25 Score=189.49 Aligned_cols=308 Identities=15% Similarity=0.216 Sum_probs=231.9
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
.....|.+++|+|.|.+.|+|+...+.+|-....-.......+ ....+.....+.-+.|.+.|+|
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~he---------------a~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHE---------------AAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccc---------------cccCCCeEEeeeccccCccEEE
Confidence 3455799999999999999999999988875422111100000 0000011123455678999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCc------eeccCCCCCCeEEEEeCCC----CCeEEEEec-CCcEEEEEcCCce
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGK------KKFLPRIGSPLLYFTESPD----PSLSSISCA-DNQVHLLKMPSME 427 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~------~~~~~~~~~~v~~~~~s~~----~~~l~~~~~-d~~i~i~d~~~~~ 427 (762)
.+|+|+|.+|++|+.|.+|++..+.... ...+.-|.+.|..++|-.+ +..|++++. |-.|++-|...|+
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 9999999999999999999987654332 2456678889999999433 455665543 5678888888999
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
..+.+.+|. +.|.++ ++-++-.+++|+.|.+|++||++-...+..+......- .-....|.+++..
T Consensus 175 ~~~a~sght----------ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~---glessavaav~vd 240 (350)
T KOG0641|consen 175 GFHALSGHT----------GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG---GLESSAVAAVAVD 240 (350)
T ss_pred cceeecCCc----------ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC---CcccceeEEEEEC
Confidence 999999998 566554 45568899999999999999998877766654332211 1115679999999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
|.|++|+++. .|....+||++.++.+..+ .+| ...|.++.|||...++.+++.|..|++-|+...
T Consensus 241 psgrll~sg~---------~dssc~lydirg~r~iq~f-----~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 241 PSGRLLASGH---------ADSSCMLYDIRGGRMIQRF-----HPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCcceeeecc---------CCCceEEEEeeCCceeeee-----CCC-ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 9999999998 8899999999999887765 688 999999999999999999999999999999754
Q ss_pred cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 588 LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
-. ..++ ..+...|...+..+.|+|..--+++.+ |.++.+|-+.
T Consensus 306 la-~el~------~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 306 LA-HELP------IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hh-hcCc------eEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 32 2221 122345788888999999887777777 9999999764
No 96
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.9e-27 Score=203.41 Aligned_cols=277 Identities=16% Similarity=0.211 Sum_probs=219.6
Q ss_pred eEEEEecC-CCEEEEEe-------cCCeEEEEecCCCcee---ccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcC
Q 040987 357 SVLIFSSD-GAYLYSGG-------KEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMP 424 (762)
Q Consensus 357 ~~~~~s~~-g~~l~s~~-------~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~ 424 (762)
+++.|||= .++|+.+. ..|.+.+.++..++-+ ....-...+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 56788882 23343322 3488999998643332 233445679999999864 677888899999999965
Q ss_pred C-ceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 425 S-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 425 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
. ..++..++.|+ ..|.++.|++ +++.+++++.|++|++|+...+..+.++.. | ...|.
T Consensus 92 ~~s~Pi~~~kEH~----------~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g----h------~~~Iy 151 (311)
T KOG0277|consen 92 MPSKPIHKFKEHK----------REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG----H------NSCIY 151 (311)
T ss_pred CCCcchhHHHhhh----------hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC----C------ccEEE
Confidence 4 55777888877 7889999998 556778889999999999988777666433 2 78899
Q ss_pred EEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEE
Q 040987 503 LVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFK 580 (762)
Q Consensus 503 ~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~ 580 (762)
..+|+| ..+.+++++ +|+.+++||++.......+ ..| ...|.++.|+. +...|++|+.|+.|+
T Consensus 152 ~a~~sp~~~nlfas~S---------gd~~l~lwdvr~~gk~~~i-----~ah-~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASAS---------GDGTLRLWDVRSPGKFMSI-----EAH-NSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred EEecCCCCCCeEEEcc---------CCceEEEEEecCCCceeEE-----Eec-cceeEeecccccCCcEEEecCCCceEE
Confidence 999999 467888888 9999999999877554443 568 78999999998 567899999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCC-eEEEEeccccCceeEEEE
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRN-VLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~ 657 (762)
.||++.-+... ..+.+|.-.|+.+.|||.. .+||+++ |-+++|||...+ .++.+...|..-+..+.|
T Consensus 217 ~wDir~~r~pl----------~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 217 GWDIRNLRTPL----------FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW 286 (311)
T ss_pred EEehhhccccc----------eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence 99998765332 2356899999999999965 5788888 999999999854 566677789888999999
Q ss_pred eC-CCCEEEEEEcCCCCeEEEEEC
Q 040987 658 VG-SSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 658 s~-dg~~l~s~~~d~~~~v~vwd~ 680 (762)
|+ ++.++|+++.|+. ++||+-
T Consensus 287 s~~~~~~vAs~gWDe~--l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDEL--LYVWNP 308 (311)
T ss_pred ccccCceeeecccccc--eeeecc
Confidence 98 7889999999998 999983
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=217.80 Aligned_cols=282 Identities=15% Similarity=0.202 Sum_probs=226.8
Q ss_pred ccCcCeEEEEEcCCCcE-EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 279 HHTKKLTVLAFHPTQRI-VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
...+.|.+++|+|...+ +|+.+ .-.+.+|+..+.. ..+.+....+.++
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~------------------------------~~k~~srFk~~v~ 72 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRS------------------------------VRKTFSRFKDVVY 72 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhh------------------------------hhhhHHhhcccee
Confidence 34568999999996543 44443 4469999976553 2344556778899
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCce-eccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
++.|-.||++|+.|+..|.|+++|..+... ..+..|..++..+.|+|+++ .+++|+.|+.+++||+.+......+.+|
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence 999999999999999999999999555333 35778999999999999665 5667777888999999998887788998
Q ss_pred CCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+ ..|.+.+|+|. +..+++|+.||.|++||++.. ..+.++.. ..+|..+.+-|.|..+
T Consensus 153 t----------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-----------g~pVe~vl~lpsgs~i 211 (487)
T KOG0310|consen 153 T----------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-----------GCPVESVLALPSGSLI 211 (487)
T ss_pred c----------ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC-----------CCceeeEEEcCCCCEE
Confidence 8 89999999995 558899999999999999876 33333322 6789999999999999
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
|+++ .+.+++||+.++....... ..| ...|+|+.+..++..|++++-|+.+++||+.+.+.....
T Consensus 212 asAg----------Gn~vkVWDl~~G~qll~~~----~~H-~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 212 ASAG----------GNSVKVWDLTTGGQLLTSM----FNH-NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred EEcC----------CCeEEEEEecCCceehhhh----hcc-cceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 9995 4699999999665543332 337 889999999999999999999999999998877766655
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
. -.++|.+++.+||++.++.|. ||.+.+-+....
T Consensus 277 ~------------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 277 K------------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred e------------cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 2 468999999999999999997 998877754443
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.7e-26 Score=203.73 Aligned_cols=306 Identities=15% Similarity=0.151 Sum_probs=218.7
Q ss_pred eeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe-ecCCeEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG-DVTGRIL 306 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~dg~v~ 306 (762)
..+.+|.+.|++++|+.||++|| ++.|+.|++|++.+.+...-+..+.... -+..+.++|+||.+-++.. -...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCCEEE
Confidence 45678999999999999999999 5689999999999866542222222212 2356889999998865544 4456799
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+|.+...+.=. .. . ..-.......-+.|.-.+..+-...++++|++++.|..|.+|+++ |+
T Consensus 159 vyk~~K~~dG~-----~~------------~-~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 159 VYKLVKKTDGS-----GS------------H-HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred EEEeeecccCC-----CC------------c-ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 99864432100 00 0 000001112223466677777777888999999999999999999 55
Q ss_pred e-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC---c-----eEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 387 K-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS---M-----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 387 ~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~---~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
. ..+......-+..+.||+|+++++++..-.+++|..-- | .....+++|+ ..|..++|+++
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~----------saV~~~aFsn~ 289 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ----------SAVLAAAFSNS 289 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch----------hheeeeeeCCC
Confidence 4 34444445567788999999999999999999998632 2 2234567776 89999999999
Q ss_pred CCEEEEeecCceEEEEEcCCCC----ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 458 GGLVALRAENYCIHFYSLLDDR----GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
.+.+++.+.||.+++||+.-.- ....+... ..+..+.......++++|+|+.||.+. ...+++
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g---~~pl~aag~~p~RL~lsP~g~~lA~s~----------gs~l~~ 356 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEG---SAPLHAAGSEPVRLELSPSGDSLAVSF----------GSDLKV 356 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcC---CcchhhcCCCceEEEeCCCCcEEEeec----------CCceEE
Confidence 9999999999999999985321 11111111 011111134455899999999999985 358999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
|..++++...++. ..| ...|.+++|+++|+++++++ |..+++..
T Consensus 357 ~~se~g~~~~~~e----~~h-~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 357 FASEDGKDYPELE----DIH-STTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEcccCccchhHH----Hhh-cCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 9999988766664 467 89999999999999999998 56777765
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-27 Score=232.30 Aligned_cols=276 Identities=15% Similarity=0.217 Sum_probs=229.3
Q ss_pred eeEEEEecCCCeEEEEecCCcc-------eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc--eEEeeecC
Q 040987 43 SFIFAVARSSGLCRTAEYPAVN-------SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSLEG 112 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~-------~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~--~~~~~l~~ 112 (762)
..||.+|+.||.|++|++.... ...+.-|.+.|.. ++...+|+.|++++ |-+|++|+...+ -+..++..
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVND-iiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVND-IILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhh-HHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 5599999999999999987422 3456889999997 99999999999999 899999999877 58889999
Q ss_pred CccceeEEEE-eCCCCcccceeeeEEeeecCCeEEEEeCCCcce--EEEEEeccceEEEeecccccCCcccCCCCCceEE
Q 040987 113 HKAPVTTVIV-VPASTPATKILSYCWTASLDGTIKYWDFSVPEL--LKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFA 189 (762)
Q Consensus 113 h~~~V~~v~~-s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 189 (762)
|..-|.|++. .++. .++||||-|+.|.+||+++|.. +.++..
T Consensus 116 H~DYVkcla~~ak~~-------~lvaSgGLD~~IflWDin~~~~~l~~s~n~---------------------------- 160 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNN-------ELVASGGLDRKIFLWDINTGTATLVASFNN---------------------------- 160 (735)
T ss_pred ccchheeeeecccCc-------eeEEecCCCccEEEEEccCcchhhhhhccc----------------------------
Confidence 9999999999 6666 6889999999999999998843 322210
Q ss_pred EEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchh
Q 040987 190 YLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEA 268 (762)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~ 268 (762)
+..- ....++...|++++..+.|..+++| ..+.+++||..+.+.
T Consensus 161 --------------------------~t~~---------sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k 205 (735)
T KOG0308|consen 161 --------------------------VTVN---------SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK 205 (735)
T ss_pred --------------------------cccc---------cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc
Confidence 0000 1122677889999999999888855 789999999999885
Q ss_pred hhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccccee
Q 040987 269 ERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTT 348 (762)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (762)
. ..+.+|+..|.++..++||+.+++++.||+|++||+... .++.+
T Consensus 206 i-----mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ------------------------------rCl~T 250 (735)
T KOG0308|consen 206 I-----MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ------------------------------RCLAT 250 (735)
T ss_pred e-----eeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc------------------------------ceeee
Confidence 4 445599999999999999999999999999999999544 45678
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc-eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 349 WHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 349 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
+..|...|+++..+|+=.++++|+.||.|+.=|+++.. ...+.....++..+..+.+.+.+-+++.|+.|+-|...
T Consensus 251 ~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 89999999999999999999999999999999999843 35566677788888887666666777889999988765
No 100
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=216.96 Aligned_cols=278 Identities=15% Similarity=0.173 Sum_probs=227.9
Q ss_pred cccceeEEEEecCCCE-EEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
..+.|.+++|+|...+ +++.+ .-.+.+|+..+.... .+......+.++.|-.||+++++|...|.|++||..+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3467999999995433 44443 357999998887664 47778889999999999999999999999999998877778
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
+.+.+|+ .++....|+|++ ..+++|++|+.+++||+.+... .....+| .+.|.+.+|+|
T Consensus 104 R~~~ah~----------apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v----~~~l~~h------tDYVR~g~~~~ 163 (487)
T KOG0310|consen 104 RQLYAHQ----------APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV----QAELSGH------TDYVRCGDISP 163 (487)
T ss_pred HHHhhcc----------CceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----EEEecCC------cceeEeecccc
Confidence 8888888 778999999954 5677888889999999988763 2233333 88999999999
Q ss_pred CCC-eEEEEeeeccccCCCceeEEEEEEecCC-CceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 509 DGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQ-NKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 509 ~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
-.. .+++|+ .||.|++||.+.. ....++ .| ..+|.++.+-|.|..+|+++. ..+++||+.+
T Consensus 164 ~~~hivvtGs---------YDg~vrl~DtR~~~~~v~el------nh-g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~ 226 (487)
T KOG0310|consen 164 ANDHIVVTGS---------YDGKVRLWDTRSLTSRVVEL------NH-GCPVESVLALPSGSLIASAGG-NSVKVWDLTT 226 (487)
T ss_pred CCCeEEEecC---------CCceEEEEEeccCCceeEEe------cC-CCceeeEEEcCCCCEEEEcCC-CeEEEEEecC
Confidence 755 677777 8999999999987 444444 45 779999999999999999885 5699999996
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLV 665 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~ 665 (762)
|...... ...|...|+|+.+..++..|.+|+ |+.|++||+.+.+.+..+. -.++|.+++.+||++.++
T Consensus 227 G~qll~~----------~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 227 GGQLLTS----------MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred Cceehhh----------hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEE
Confidence 6554433 123889999999999999999999 9999999999999998886 668999999999999999
Q ss_pred EEEcCCCCeEEEEEC
Q 040987 666 ATSWGSKPQLSVWNM 680 (762)
Q Consensus 666 s~~~d~~~~v~vwd~ 680 (762)
.|..+|. +.+=+.
T Consensus 296 iGmsnGl--v~~rr~ 308 (487)
T KOG0310|consen 296 IGMSNGL--VSIRRR 308 (487)
T ss_pred Eecccce--eeeehh
Confidence 9999996 554433
No 101
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=5.3e-25 Score=227.81 Aligned_cols=284 Identities=11% Similarity=0.095 Sum_probs=210.8
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
-..|.....++|+..+++++.+.....|+..++..+......- ........+.+|.+.|.+++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-----------------~~~~~~~~l~GH~~~V~~v~ 82 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-----------------KLASNPPILLGQEGPIIDVA 82 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccc-----------------cCCCCCceEeCCCCCEEEEE
Confidence 3456666777787777888888888889876553221110000 00011235789999999999
Q ss_pred Eec-CCCEEEEEecCCeEEEEecCCCc--------eeccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEE
Q 040987 361 FSS-DGAYLYSGGKEGVLVVWQLDTGK--------KKFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 361 ~s~-~g~~l~s~~~dg~i~~wd~~~~~--------~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
|+| ++++|++++.|++|++||+.++. ...+..|...|.+++|+|++ ++|++++.|+.|++||+.+++...
T Consensus 83 fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~ 162 (493)
T PTZ00421 83 FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE 162 (493)
T ss_pred EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE
Confidence 999 88999999999999999997653 23466788899999999986 689999999999999999999988
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
.+.+|. ..|.+++|+|++.+|++++.|+.|++||+++++.+..+.... ......+.|.+++
T Consensus 163 ~l~~h~----------~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~---------~~~~~~~~w~~~~ 223 (493)
T PTZ00421 163 VIKCHS----------DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA---------SAKSQRCLWAKRK 223 (493)
T ss_pred EEcCCC----------CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC---------CCcceEEEEcCCC
Confidence 888877 789999999999999999999999999999987665543321 1234567888988
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQ 589 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~ 589 (762)
..+++++.. ...|+.|++||++......... ..+....+....|++++++|++++ .|+.|++||+.++..
T Consensus 224 ~~ivt~G~s-----~s~Dr~VklWDlr~~~~p~~~~----~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 224 DLIITLGCS-----KSQQRQIMLWDTRKMASPYSTV----DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CeEEEEecC-----CCCCCeEEEEeCCCCCCceeEe----ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 888776421 0147899999998765443321 122144566778999999999887 599999999998765
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCC
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSAD 619 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 619 (762)
....+ ..+...+..++|.|.
T Consensus 295 ~~~~~----------~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 295 TFCSS----------YSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEee----------ccCCCCCcceEeccc
Confidence 44321 123456778888884
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.7e-26 Score=200.53 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=223.8
Q ss_pred eccccceeEEEEec-CCCEEEEEecCCeEEEEecCCC-ce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 350 HWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTG-KK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 350 ~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~-~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
....+.|.+++||| ....++.++.|++|++|++... .. .....+.+++.+++|+.||..+++++.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34567899999999 4556668999999999999873 43 35677899999999999999999999999999999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC--EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG--LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
++. ..+..|. +.|..+.|-+... .|++|+.|.+|++||++...++.++.... .+.+
T Consensus 104 ~Q~-~~v~~Hd----------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-----------RvYa 161 (347)
T KOG0647|consen 104 GQV-SQVAAHD----------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-----------RVYA 161 (347)
T ss_pred CCe-eeeeecc----------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-----------eeee
Confidence 854 4455555 7889999987655 89999999999999999988888877643 3555
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
+.. ....++++. .++.|.+|+++.+...+.... .+- .-.+++++..+|....+.|+-+|.+.|..
T Consensus 162 ~Dv--~~pm~vVat---------a~r~i~vynL~n~~te~k~~~---SpL-k~Q~R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 162 ADV--LYPMAVVAT---------AERHIAVYNLENPPTEFKRIE---SPL-KWQTRCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred hhc--cCceeEEEe---------cCCcEEEEEcCCCcchhhhhc---Ccc-cceeeEEEEEecCCceEeeeecceEEEEe
Confidence 443 234566666 678999999986654333221 222 55789999999998889999999999999
Q ss_pred cccccccccccCCceeeeeecccC---CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 584 CNDELQQKDLQSSGWSCHAVGSYK---KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
++.+.....+ .++||...... -..|++++|+|.-..|++++ ||+..+||-+....+...+.|..+|++.+|+.
T Consensus 227 id~~~~~~nF---tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~ 303 (347)
T KOG0647|consen 227 IDDPNPKDNF---TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR 303 (347)
T ss_pred cCCCCccCce---eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC
Confidence 9987654444 67888754332 23678899999877888776 99999999999888888888999999999999
Q ss_pred CCCEEEEEE
Q 040987 660 SSEYLVATS 668 (762)
Q Consensus 660 dg~~l~s~~ 668 (762)
+|.++|.+.
T Consensus 304 ~G~ifaYA~ 312 (347)
T KOG0647|consen 304 NGSIFAYAL 312 (347)
T ss_pred CCCEEEEEe
Confidence 999998874
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-24 Score=184.84 Aligned_cols=305 Identities=16% Similarity=0.199 Sum_probs=233.8
Q ss_pred eeccCCCceEEEECCCCCEEEEE-eCCeEEEEEcc------Cch----hhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 231 TLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVP------DVE----AERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~------~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
.......|.+++|.|.|.+.|++ ...+++|-... .+. ..+....+....|.+.|.|.+|+|+|+++|+|
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 34567789999999999999976 45677765433 111 11112234455789999999999999999999
Q ss_pred ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec----CCCEEEEEe-cC
Q 040987 300 DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS----DGAYLYSGG-KE 374 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----~g~~l~s~~-~d 374 (762)
+.|.+|++........-.. ..--.+.-|.+.|..++|-. .|..|++++ .|
T Consensus 108 sndk~ik~l~fn~dt~~~~-------------------------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNAT-------------------------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred CCCceEEEEeccccccccc-------------------------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 9999999987644321110 11245677999999999954 346677765 45
Q ss_pred CeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 375 GVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 375 g~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
..|++-|..+|+.. .+.+|.+.|.++ ++-+|-++++|+.|.+|++||++-..++.++........ ...+.|.+++
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g---lessavaav~ 238 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG---LESSAVAAVA 238 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC---cccceeEEEE
Confidence 67888888888764 577788888765 355788999999999999999998888777653221110 0115789999
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
..|.|++|++|-.|....+||++.++.+..+... ...|.++.|+|...|+.+++ .|..|++
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph----------sadir~vrfsp~a~yllt~s---------yd~~ikl 299 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH----------SADIRCVRFSPGAHYLLTCS---------YDMKIKL 299 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceeeeeCCC----------ccceeEEEeCCCceEEEEec---------ccceEEE
Confidence 9999999999999999999999999887766432 77899999999999999999 8899999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
-|++.. ...++...+...| ...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 300 tdlqgd-la~el~~~vv~eh-kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 300 TDLQGD-LAHELPIMVVAEH-KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eecccc-hhhcCceEEEEec-cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999854 4445555556778 8888889999999889999999999999764
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=209.66 Aligned_cols=282 Identities=15% Similarity=0.201 Sum_probs=240.4
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
..+.++...+....+++|+.|..+.++|...++.. .+.+|...|+.+.++|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 35777777777678999999999999999988875 57888889999999999999999999999999999877666666
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
..|. ..|+.+..+|.|.|+++++.|++..+.|++++..+........ ...+++.+|+|||..
T Consensus 300 ~~h~----------~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s--------~v~~ts~~fHpDgLi 361 (506)
T KOG0289|consen 300 RPHE----------EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS--------DVEYTSAAFHPDGLI 361 (506)
T ss_pred cccc----------ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc--------cceeEEeeEcCCceE
Confidence 6655 7899999999999999999999999999999987766544211 456899999999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
|+++. .|+.++|||+..+.....+ .+| .++|..++|+.+|-+||++++|+.|++||++.-+....
T Consensus 362 fgtgt---------~d~~vkiwdlks~~~~a~F-----pgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 362 FGTGT---------PDGVVKIWDLKSQTNVAKF-----PGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred EeccC---------CCceEEEEEcCCccccccC-----CCC-CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 99999 8999999999998866655 689 99999999999999999999999999999987775555
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC--CCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD--RNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~--~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
+. ......+.++.|.+.|++|+.++ |=.|++++-. +..++..+..|.+..+.+.|..+.++++++|.
T Consensus 427 ~~----------l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 427 IQ----------LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred ee----------ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc
Confidence 42 11234799999999999999986 7777777644 45677788889889999999999999999999
Q ss_pred CCCCeEEEEEC
Q 040987 670 GSKPQLSVWNM 680 (762)
Q Consensus 670 d~~~~v~vwd~ 680 (762)
|.. ++++.+
T Consensus 497 d~~--l~~~a~ 505 (506)
T KOG0289|consen 497 DAI--LRLYAL 505 (506)
T ss_pred hhh--eEEeec
Confidence 997 877754
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.7e-27 Score=207.76 Aligned_cols=324 Identities=18% Similarity=0.193 Sum_probs=245.3
Q ss_pred eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeE
Q 040987 67 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTI 145 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i 145 (762)
.+.||++.|-. ++-......+.+++ |.+.+||.+++|.++.++.||.+.|+++.|++.+ .+++|++.|++.
T Consensus 143 e~~GHkDGiW~-Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-------~L~lTaSGD~ta 214 (481)
T KOG0300|consen 143 ELEGHKDGIWH-VAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-------LLLLTASGDETA 214 (481)
T ss_pred hhcccccceee-ehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc-------ceEEEccCCcch
Confidence 46899999997 77766666888888 7999999999999999999999999999999999 578899999999
Q ss_pred EEEeCCC----cceEE--EEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccc-cEEE
Q 040987 146 KYWDFSV----PELLK--TIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNG-RICK 218 (762)
Q Consensus 146 ~vWd~~~----~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~i 218 (762)
.||...- .+... .....+.+. .+|...+. .. -.-..|| +|++
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e------------~sDe~~~d------------~d-------~~~~sD~~tiRv 263 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEE------------HSDEHNRD------------TD-------SSEKSDGHTIRV 263 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhh------------cccccccc------------cc-------cccccCCceeee
Confidence 9998331 11000 000000000 00000000 00 0000111 1211
Q ss_pred EecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEE
Q 040987 219 CNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297 (762)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 297 (762)
.-..+.+|.+.|.+..|...|+.++ ++.|.+..+||+++++.. ..+.+|....+.++-+|..++++
T Consensus 264 --------Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v-----~~LtGHd~ELtHcstHptQrLVv 330 (481)
T KOG0300|consen 264 --------PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV-----NILTGHDSELTHCSTHPTQRLVV 330 (481)
T ss_pred --------eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee-----ccccCcchhccccccCCcceEEE
Confidence 1145677999999999999999887 557999999999999977 88999999999999999999999
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
+.+.|-+.++||+...- ..+..|+||.+.|+++.|..|. .+++++.|.+|
T Consensus 331 TsSrDtTFRLWDFReaI-----------------------------~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTv 380 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREAI-----------------------------QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTV 380 (481)
T ss_pred EeccCceeEeccchhhc-----------------------------ceeeeecccccceeEEEEecCC-ceeecCCCceE
Confidence 99999999999986321 2357899999999999998764 78999999999
Q ss_pred EEEecCCCce-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC
Q 040987 378 VVWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 378 ~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 456 (762)
++||+++.+. +.......++..++.+..+..|+.-..+..|++||++..++. .+. .+....|+..|.+++|..
T Consensus 381 KvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla-RlP-----rtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 381 KVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA-RLP-----RTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred EEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccc-cCC-----cccccccceeeeeeeccc
Confidence 9999998765 455667788999999998889998888889999999854432 221 122333457899999987
Q ss_pred CC--CEEEEeecCceEEEEEcCCC
Q 040987 457 DG--GLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 457 ~~--~~l~~~~~dg~i~i~d~~~~ 478 (762)
+. .-|++++.|..+.-|.+...
T Consensus 455 ehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 455 EHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCcccccccccccceeeeeEeccc
Confidence 53 34888899999999988654
No 106
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.5e-25 Score=228.32 Aligned_cols=238 Identities=14% Similarity=0.174 Sum_probs=186.6
Q ss_pred eeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 276 ITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 276 ~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
.+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++.... ....++..+.+|..
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-----------------------~~~~~l~~L~gH~~ 126 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-----------------------NISDPIVHLQGHTK 126 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-----------------------ccCcceEEecCCCC
Confidence 4678999999999999 88999999999999999986542110 01134567889999
Q ss_pred ceeEEEEecCC-CEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 355 EVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 355 ~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
.|.+++|+|++ ++|++++.|++|++||+.+++.. .+..|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 99999999985 68999999999999999998775 45568889999999999999999999999999999999998888
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEee----cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA----ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
.+|.. .....+.|.+++..+++++ .|+.|++||+++........... . ...+....|++
T Consensus 207 ~~H~~---------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d--~------~~~~~~~~~d~ 269 (493)
T PTZ00421 207 EAHAS---------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD--Q------SSALFIPFFDE 269 (493)
T ss_pred ecCCC---------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC--C------CCceEEEEEcC
Confidence 88762 2345678889888777654 47899999998754332221110 0 33466678999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
++++|++++. +|+.|++||+..++...... ..+ ...+..++|.|.
T Consensus 270 d~~~L~lggk--------gDg~Iriwdl~~~~~~~~~~----~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 270 DTNLLYIGSK--------GEGNIRCFELMNERLTFCSS----YSS-VEPHKGLCMMPK 314 (493)
T ss_pred CCCEEEEEEe--------CCCeEEEEEeeCCceEEEee----ccC-CCCCcceEeccc
Confidence 9999988863 58999999999887655432 123 556788888885
No 107
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.5e-26 Score=195.78 Aligned_cols=280 Identities=13% Similarity=0.210 Sum_probs=216.4
Q ss_pred EEEEEcC-CCcEEEEe-------ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 285 TVLAFHP-TQRIVAAG-------DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 285 ~~~~~sp-~~~~l~~~-------~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
.++.||| -.++||.+ ...|.+.|.++...+.+. ....+. -.+.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~---------------------------e~~s~d-~~D~L 63 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ---------------------------ECQSYD-TEDGL 63 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE---------------------------EEEeee-cccce
Confidence 5788999 23344433 236889999885443221 112222 34678
Q ss_pred eEEEEecC-CCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 357 SVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 357 ~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
..++|+++ .+.+++++.||++++||+..... ..+.+|...|.++.|++ ++..+++++.|++|++|+....+.++++
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf 143 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF 143 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence 99999985 46788899999999999654332 45778999999999988 4566778889999999999999999999
Q ss_pred ccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CC
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DG 510 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g 510 (762)
.+|. ..|...+|+| ..+.+++++.|+.+++||++.......+..+ ...+.+..|+. +.
T Consensus 144 ~gh~----------~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah----------~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 144 NGHN----------SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH----------NSEILCCDWSKYNH 203 (311)
T ss_pred cCCc----------cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec----------cceeEeecccccCC
Confidence 9987 7899999999 5789999999999999999876544444432 56799999988 55
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
+.+++++ .|+.|+.||++.-+.+. ..+.+| .-.|+.+.|||. ...|++++.|-+++|||...+..
T Consensus 204 ~vl~Tg~---------vd~~vr~wDir~~r~pl----~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 204 NVLATGG---------VDNLVRGWDIRNLRTPL----FELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred cEEEecC---------CCceEEEEehhhccccc----eeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 6777887 89999999999766432 123789 899999999995 56899999999999999975433
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEEc-CCeEEEEeC
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~~-d~~i~iwd~ 636 (762)
.... ...|..-+..+.||+ ++.++|+.+ |+.++||+.
T Consensus 270 ~~e~----------~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 AIET----------VDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhh----------hhccceEEeccccccccCceeeecccccceeeecc
Confidence 2221 235788889999997 567899998 999999984
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=208.53 Aligned_cols=281 Identities=17% Similarity=0.209 Sum_probs=236.5
Q ss_pred CCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 235 MKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
...+.++...|....+. .+.|..+.++|...++.. ..+.+|...|+.+.|+|+...+++++.|..|+||.....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-----~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-----ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh-----hhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 45678888888755555 557889999999999877 889999999999999999999999999999999997544
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI 393 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 393 (762)
. .......|..+|+.+..+|.|.||++++.|++..+.|++++.......+
T Consensus 294 s------------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~ 343 (506)
T KOG0289|consen 294 S------------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD 343 (506)
T ss_pred c------------------------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee
Confidence 2 2356678999999999999999999999999999999999998654444
Q ss_pred C---CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceE
Q 040987 394 G---SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 394 ~---~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
. -.+++.+|+|||..+.+|..|+.++|||+.++.....|.+|. +.|..++|+.+|-+|+++++|+.|
T Consensus 344 ~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght----------~~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 344 ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT----------GPVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCC----------CceeEEEeccCceEEEEEecCCeE
Confidence 3 358999999999999999999999999999999999999988 889999999999999999999999
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC--CceeEEEEE
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ--NKEFTLSTI 548 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~ 548 (762)
++||++..+...++.... ...+.++.|.+.|++|+.++ .+-.|++++-.+. .....
T Consensus 414 ~lwDLRKl~n~kt~~l~~---------~~~v~s~~fD~SGt~L~~~g---------~~l~Vy~~~k~~k~W~~~~~---- 471 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQLDE---------KKEVNSLSFDQSGTYLGIAG---------SDLQVYICKKKTKSWTEIKE---- 471 (506)
T ss_pred EEEEehhhcccceeeccc---------cccceeEEEcCCCCeEEeec---------ceeEEEEEecccccceeeeh----
Confidence 999999888777776543 23689999999999999997 4445555443322 22222
Q ss_pred eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 549 VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
+..| .+..+++.|....+++++++.|..++++.+
T Consensus 472 -~~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 472 -LADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -hhhc-ccccceeeecccceEEeeccchhheEEeec
Confidence 2456 778899999999999999999999888754
No 109
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=211.31 Aligned_cols=289 Identities=14% Similarity=0.188 Sum_probs=230.3
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee---ccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCce
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~ 427 (762)
..+.|+++.|+|....+++++.|+++++|.++..... .+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3467999999999999999999999999988754432 2233456899999999999 88888889999999998876
Q ss_pred EEEE--EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 428 IIRS--ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 428 ~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
..+. ..++. +..+..+.+++++++|+..+..|.|.+....+++.+..+.. .+.+..++
T Consensus 292 ~~k~~~~~g~e---------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-----------eG~v~~~~ 351 (514)
T KOG2055|consen 292 VTKLKPPYGVE---------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-----------EGVVSDFT 351 (514)
T ss_pred cccccCCCCcc---------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-----------ccEEeeEE
Confidence 5433 23322 14677889999999999999999999999999998888876 67799999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|+.|++.|++.+ ++|.|.+||++...+...+.. .| .-.-++++.|+++.+||+|+..|.|.|||.+
T Consensus 352 fsSdsk~l~~~~---------~~GeV~v~nl~~~~~~~rf~D---~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 352 FSSDSKELLASG---------GTGEVYVWNLRQNSCLHRFVD---DG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred EecCCcEEEEEc---------CCceEEEEecCCcceEEEEee---cC--ccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 999999998888 889999999999877766643 22 2234678888999999999999999999976
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc---CCeEEEEeCCCCeEEEEeccc---cCceeEEEEeC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA---ETVITLWDPDRNVLVAVIGET---LTPIMNMSFVG 659 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~---d~~i~iwd~~~~~~~~~l~~~---~~~v~~~~~s~ 659 (762)
+...-...+ +......-...|++|.|+||+++||.++ ...+++-.+.+......+... -+.|++++|||
T Consensus 418 s~~~s~~Pk-----Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 418 SCFASTNPK-----PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred hhhccCCCC-----chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 543222111 1111222357899999999999999987 688999988877666555432 34499999999
Q ss_pred CCCEEEEEEcCCCCeEEEEECC
Q 040987 660 SSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.|.+||.|..+|. |.+|.+.
T Consensus 493 ~sG~lAvGNe~gr--v~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGR--VHLFKLH 512 (514)
T ss_pred CCceEEeecCCCc--eeeEeec
Confidence 9999999999998 9999864
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.3e-26 Score=212.07 Aligned_cols=287 Identities=18% Similarity=0.237 Sum_probs=233.1
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
..++|+++.|+|....|++++.||.+++|.+.+... ..++.+.-...+|.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N----------------------------~~lqS~~l~~fPi~~a 263 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN----------------------------PKLQSIHLEKFPIQKA 263 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC----------------------------hhheeeeeccCcccee
Confidence 356899999999999999999999999999876532 2345555567789999
Q ss_pred EEecCCC-EEEEEecCCeEEEEecCCCceeccCCC----CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 360 IFSSDGA-YLYSGGKEGVLVVWQLDTGKKKFLPRI----GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 360 ~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+|.|+|. .+++++....++.||+.+.+...+... ...+.....|+++++|+..+..|.|.+....+++.+..++-
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI 343 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence 9999998 899999999999999999887543322 23567788999999999999999999999999999988864
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
. +.|..++|+.|++.|++.+.+|.|++||++....+.++..... ..-+.++.+++|.+||
T Consensus 344 e-----------G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~---------v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 344 E-----------GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS---------VHGTSLCISLNGSYLA 403 (514)
T ss_pred c-----------cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc---------cceeeeeecCCCceEE
Confidence 3 7899999999999999999999999999999988777765332 2257788899999999
Q ss_pred EEeeeccccCCCceeEEEEEEecCCC------ceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC--CCcEEEEEccc
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQN------KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY--GGDFKVWICND 586 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~--dg~i~iwd~~~ 586 (762)
+|+ ..|.|.|||..+.. ++..+. .- ...|+++.|+||+++||.+|. +..+++--+.+
T Consensus 404 ~GS---------~~GiVNIYd~~s~~~s~~PkPik~~d-----NL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 404 TGS---------DSGIVNIYDGNSCFASTNPKPIKTVD-----NL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ecc---------CcceEEEeccchhhccCCCCchhhhh-----hh-heeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 999 88999999976432 222221 11 568999999999999998875 56788888877
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
......++ . ....-+.++||+|||.|.+||.|. +|.+.+|.+.
T Consensus 469 ~TVFsNfP-----~---~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFP-----T---SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCC-----C---CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 66555442 2 123457899999999999999999 8999999864
No 111
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.8e-25 Score=229.67 Aligned_cols=280 Identities=15% Similarity=0.213 Sum_probs=240.7
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee--ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK--FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
+...+.+..|. ..++++++.+++|.+||..++... .+.+|.+.|.++++..-+..+++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 55667788887 458999999999999999998875 37889999999999887899999999999999999999999
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
..+.+|. +.+.++... ...+++|+.|.+|++|++.++..+..+.. | ...|.++..+
T Consensus 285 ~~l~gh~----------stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~----h------~~~V~~v~~~-- 340 (537)
T KOG0274|consen 285 HSLQGHT----------SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG----H------TGPVNCVQLD-- 340 (537)
T ss_pred EEecCCC----------ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc----c------cccEEEEEec--
Confidence 9999988 666766655 44788889999999999998877766543 2 7889999998
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc-c
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE-L 588 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~-~ 588 (762)
+.++++++ .|++|++||+.+++.+..+ .+| ...|.++.+.+. ..+++|+.|++|++||+.+. +
T Consensus 341 ~~~lvsgs---------~d~~v~VW~~~~~~cl~sl-----~gH-~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 341 EPLLVSGS---------YDGTVKVWDPRTGKCLKSL-----SGH-TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred CCEEEEEe---------cCceEEEEEhhhceeeeee-----cCC-cceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 88999999 8899999999999888777 689 999999988765 89999999999999999988 6
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeCCCCEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~dg~~l~s 666 (762)
+...+ .+|..-+..+.+ .+++|.+++ |++|++||..+++++..+.+ |...|..+++. ...+++
T Consensus 405 c~~tl-----------~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~ 469 (537)
T KOG0274|consen 405 CIHTL-----------QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILC 469 (537)
T ss_pred hhhhh-----------cCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEE
Confidence 55554 467777766554 677999998 99999999999999999998 67888888887 468899
Q ss_pred EEcCCCCeEEEEECCCCceeeEEE
Q 040987 667 TSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
++.|+. +++||+.++++...+.
T Consensus 470 s~~~~~--~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 470 SSDDGS--VKLWDLRSGTLIRTLL 491 (537)
T ss_pred EecCCe--eEEEecccCchhhhhh
Confidence 999998 9999999999988773
No 112
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.5e-25 Score=229.56 Aligned_cols=244 Identities=13% Similarity=0.121 Sum_probs=184.4
Q ss_pred ecCCCeEEEEecCCcce-eeeecCcccccCCceeecC-CCEEEEEe-CCEEEEEEcccce--------EEeeecCCccce
Q 040987 49 ARSSGLCRTAEYPAVNS-KMIRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGL--------QISSLEGHKAPV 117 (762)
Q Consensus 49 ~~~~g~i~~~~~~~~~~-~~~~~h~~~v~~~~~~s~d-g~~la~~~-~~~i~iwd~~~~~--------~~~~l~~h~~~V 117 (762)
|+.+|.|++|+...... ..+.+|.+.|.+ ++|+|+ +.+||+|+ |++|+|||+.++. ++..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~-lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILD-LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEE-EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 55688999998765433 457899999997 999997 78999999 7999999997642 345788999999
Q ss_pred eEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeecc
Q 040987 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTR 197 (762)
Q Consensus 118 ~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (762)
.+++|+|++. .+|+|++.|++|+|||+.+++.+..+.
T Consensus 129 ~sVaf~P~g~------~iLaSgS~DgtIrIWDl~tg~~~~~i~------------------------------------- 165 (568)
T PTZ00420 129 SIIDWNPMNY------YIMCSSGFDSFVNIWDIENEKRAFQIN------------------------------------- 165 (568)
T ss_pred EEEEECCCCC------eEEEEEeCCCeEEEEECCCCcEEEEEe-------------------------------------
Confidence 9999999985 456899999999999999887554332
Q ss_pred ccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeee
Q 040987 198 ETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKI 276 (762)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~ 276 (762)
+...|.+++|+|+|++|+++ .|+.|+|||+.+++.. ..
T Consensus 166 ------------------------------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-----~t 204 (568)
T PTZ00420 166 ------------------------------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-----SS 204 (568)
T ss_pred ------------------------------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-----EE
Confidence 23457889999999999855 6999999999998754 45
Q ss_pred eeccCcCeEE-----EEEcCCCcEEEEeecCC----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccce
Q 040987 277 TLHHTKKLTV-----LAFHPTQRIVAAGDVTG----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT 347 (762)
Q Consensus 277 ~~~~~~~v~~-----~~~sp~~~~l~~~~~dg----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (762)
+.+|.+.+.+ ..|++++.+|++++.|+ .|+|||+.... .++.
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----------------------------~pl~ 255 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----------------------------SALV 255 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----------------------------CceE
Confidence 6678776543 34568989999887764 79999987421 1122
Q ss_pred --eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC--CCCCCeEEEEeCCCC
Q 040987 348 --TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP--RIGSPLLYFTESPDP 406 (762)
Q Consensus 348 --~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~v~~~~~s~~~ 406 (762)
.+..+.+.+......++|.++++|+.|++|++|++..+....+. .+..+...++|.|+.
T Consensus 256 ~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 256 TMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 22333333333334556888999999999999999887654332 345677889998864
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.2e-27 Score=211.97 Aligned_cols=286 Identities=12% Similarity=0.155 Sum_probs=229.7
Q ss_pred ceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 346 CTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+..+.+|.+.|.+++=+|.. ..+++|+.||.|++||+.+..+. .+..|.+.|..+++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45678999999999999976 78999999999999999987775 5777888999999977 67778889999999998
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.. .+.+++.+. +.+..+.-+..+..+++++++ |.|||.....++..+... ...+.+
T Consensus 137 ~~-~p~~tilg~-----------s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG----------~Dti~s 192 (433)
T KOG0268|consen 137 DG-PPLHTILGK-----------SVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWG----------ADSISS 192 (433)
T ss_pred cC-Ccceeeecc-----------ccccccccccccccccccCce--eeecccccCCccceeecC----------CCceeE
Confidence 74 466666543 456677777677778887764 999999887777766543 566899
Q ss_pred EEEecCCCe-EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 504 VALSQDGSL-MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 504 ~~~sp~g~~-l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
+.|+|-... |+++. .|+.|.+||++....+..+.. ...-+.++|+|.+--++++++|..++.|
T Consensus 193 vkfNpvETsILas~~---------sDrsIvLyD~R~~~Pl~KVi~-------~mRTN~IswnPeafnF~~a~ED~nlY~~ 256 (433)
T KOG0268|consen 193 VKFNPVETSILASCA---------SDRSIVLYDLRQASPLKKVIL-------TMRTNTICWNPEAFNFVAANEDHNLYTY 256 (433)
T ss_pred EecCCCcchheeeec---------cCCceEEEecccCCccceeee-------eccccceecCccccceeeccccccceeh
Confidence 999997664 45554 899999999999988766643 3455689999988889999999999999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeCC
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGS 660 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~d 660 (762)
|++.-..... ...+|...|.++.|||-|+-+++|+ |.+|+||.+..+.-...... --..|.++.||.|
T Consensus 257 DmR~l~~p~~----------v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D 326 (433)
T KOG0268|consen 257 DMRNLSRPLN----------VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD 326 (433)
T ss_pred hhhhhcccch----------hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecc
Confidence 9976543322 2457889999999999999999999 99999999998754433311 1234999999999
Q ss_pred CCEEEEEEcCCCCeEEEEECCCCce
Q 040987 661 SEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 661 g~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
.+++++||+|+. |++|.....+.
T Consensus 327 skyi~SGSdd~n--vRlWka~Asek 349 (433)
T KOG0268|consen 327 SKYIISGSDDGN--VRLWKAKASEK 349 (433)
T ss_pred ccEEEecCCCcc--eeeeecchhhh
Confidence 999999999998 99998765433
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-25 Score=200.06 Aligned_cols=321 Identities=14% Similarity=0.200 Sum_probs=249.6
Q ss_pred eeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+.+|...|+.++.......+. ++.|.+.+||.++++.++ ....+|.+.|+++.|++.+.++++++.|++-.|
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-----~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-----ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccce-----eeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45678999999999887777666 457999999999999987 778899999999999999999999999999999
Q ss_pred EeccCCceeecc----cccccccccccccCCCCc--ccCCc----cccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 308 WRGFGDRTFATN----DNKMNLNLMNNEEERPGV--RDNDD----ADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 308 w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
|...-+-..... ........-..++..... ....+ ..++..+.+|...|.+..|...|+.+++++.|.+-
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 974222111110 000000000000000000 00111 23556788999999999999999999999999999
Q ss_pred EEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 378 VVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 378 ~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
.+||+++++.. .+.+|....+.++-+|..+++++++.|.+.++||++. -..+..|++|. ..|+++.|.
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt----------dtVTS~vF~ 366 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT----------DTVTSVVFN 366 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc----------cceeEEEEe
Confidence 99999999986 5788999999999999999999999999999999985 34567788888 789999999
Q ss_pred CCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
.|. .+++++.|.+|++||+++... +.++.. ..++..++.+..+..+|.-. .+..|++|
T Consensus 367 ~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-----------dS~~NRvavs~g~~iIAiPh---------DNRqvRlf 425 (481)
T KOG0300|consen 367 TDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-----------DSPANRVAVSKGHPIIAIPH---------DNRQVRLF 425 (481)
T ss_pred cCC-ceeecCCCceEEEeeeccccCcceeeec-----------CCccceeEeecCCceEEecc---------CCceEEEE
Confidence 875 588999999999999987643 334333 56789999999999999987 78899999
Q ss_pred EecCCCceeEEEEEeecCCCCCceEEEEEcCCCC--eEEEEeCCCcEEEEEcccc
Q 040987 535 VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR--AAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 535 d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~--~l~~~~~dg~i~iwd~~~~ 587 (762)
|+...+. ..++...-++| ...|+|++|..+.. -|++++.|..+.=|++...
T Consensus 426 DlnG~Rl-aRlPrtsRqgH-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNRL-ARLPRTSRQGH-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCcc-ccCCccccccc-ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9987654 33443345789 88999999986543 4788999999999998754
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.9e-25 Score=210.15 Aligned_cols=281 Identities=17% Similarity=0.248 Sum_probs=231.0
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----------------cc--CCCCCCeEEEEeCCCC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-----------------FL--PRIGSPLLYFTESPDP 406 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-----------------~~--~~~~~~v~~~~~s~~~ 406 (762)
...+..|.-++.+++++|++++.++++.+++|.-|++.+++.. .. ..|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5677789999999999999999999999999999999887732 01 1455678999999999
Q ss_pred CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
++|++|+.|..|.||+.++.+.++.+.+|. +.|.+++|-.....+++++.|+.+++|++.....+.++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr----------~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly- 283 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHR----------GAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY- 283 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccc----------cceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-
Confidence 999999999999999999999999999988 899999999988899999999999999998765554432
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
+| +..|..+....-++.+-+++ .|+++++|++..... +++.+| .+.+-|++|-.+
T Consensus 284 ---GH------qd~v~~IdaL~reR~vtVGg---------rDrT~rlwKi~eesq------lifrg~-~~sidcv~~In~ 338 (479)
T KOG0299|consen 284 ---GH------QDGVLGIDALSRERCVTVGG---------RDRTVRLWKIPEESQ------LIFRGG-EGSIDCVAFIND 338 (479)
T ss_pred ---CC------ccceeeechhcccceEEecc---------ccceeEEEeccccce------eeeeCC-CCCeeeEEEecc
Confidence 22 77799998888888888887 899999999954332 235688 889999999854
Q ss_pred CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc-----cCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC-
Q 040987 567 RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS-----YKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN- 639 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~- 639 (762)
..+++|+.+|.|.+|++...+.+.... ..|.... .+..+|++++..|...++|+|+ +|.|++|-+..|
T Consensus 339 -~HfvsGSdnG~IaLWs~~KKkplf~~~----~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 339 -EHFVSGSDNGSIALWSLLKKKPLFTSR----LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred -cceeeccCCceEEEeeecccCceeEee----ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 678999999999999998887765543 0111111 1234899999999999999999 999999999988
Q ss_pred ---eEEEEeccccCceeEEEEeCCCCEEEEEE
Q 040987 640 ---VLVAVIGETLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 640 ---~~~~~l~~~~~~v~~~~~s~dg~~l~s~~ 668 (762)
.++..+. -.+-|++++|+++|++|+++-
T Consensus 414 r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 414 RAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 4555554 556799999999999777764
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.4e-24 Score=215.20 Aligned_cols=292 Identities=14% Similarity=0.081 Sum_probs=213.0
Q ss_pred cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEE-EEEe
Q 040987 294 RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYL-YSGG 372 (762)
Q Consensus 294 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~ 372 (762)
..+++++.|+.|++||+.+++.. ..+..+. .+..++|+|+++.+ ++++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~------------------------------~~~~~~~-~~~~l~~~~dg~~l~~~~~ 50 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT------------------------------RTFPVGQ-RPRGITLSKDGKLLYVCAS 50 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE------------------------------EEEECCC-CCCceEECCCCCEEEEEEC
Confidence 46788899999999998766432 3444443 36789999999877 5667
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.++.|++||..+++..........+..++++|+++.+++++ .++.+++||+.+++.+..+... ..+.+
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-----------~~~~~ 119 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-----------VEPEG 119 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-----------CCcce
Confidence 78999999999887754333334467789999999876654 5789999999988877766532 23577
Q ss_pred EEEeCCCCEEEEeecCc-eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeE
Q 040987 452 IAFNHDGGLVALRAENY-CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVC 530 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~ 530 (762)
++|+|++++++++..++ .+.+||..+++....... ...+..++|+|+|+++++++. .++.
T Consensus 120 ~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~~~~~--------~~~~ 180 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-----------DQRPRFAEFTADGKELWVSSE--------IGGT 180 (300)
T ss_pred EEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-----------CCCccEEEECCCCCEEEEEcC--------CCCE
Confidence 99999999999888764 567789887655443321 223567899999998865542 5789
Q ss_pred EEEEEecCCCceeEEEEEeecCCC-CCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeeeecccCC
Q 040987 531 LKFWVSGTQNKEFTLSTIVYEPHR-DAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKK 608 (762)
Q Consensus 531 i~iwd~~~~~~~~~~~~~~~~~h~-~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (762)
|++||+.+++....+.......+. ......++|+|++++++.+ +.++.+.+||..+++..... .+.
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~------------~~~ 248 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL------------LVG 248 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE------------EeC
Confidence 999999988765544311000010 1123468899999986553 45678999999877654332 124
Q ss_pred CCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 609 KAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 609 ~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
..+.+++|+|+|++|++++ ++.|.+||+++++++..++.. ...+.++|+|
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 5788999999999998864 899999999999999988755 4458888875
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-24 Score=193.72 Aligned_cols=243 Identities=14% Similarity=0.201 Sum_probs=203.8
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCC--eEEEEecCCcEEEE
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPS--LSSISCADNQVHLL 421 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~i~ 421 (762)
+...+..|.+.|++++. ++.++++|+.|-+|++||+.+.... .+..|.+.|+++.|.++-. .|++++.||.|.+|
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 45677889999999998 5889999999999999999987764 5777889999999998765 89999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+.....++..+++|. +.|+.++++|.+++-++.+.|+.+++||+-.++.-..+.. ....
T Consensus 113 ~~~~W~~~~slK~H~----------~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-----------~~~a 171 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHK----------GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-----------KNKA 171 (362)
T ss_pred EcCCeEEeeeecccc----------cccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-----------CCcc
Confidence 999999999999998 7799999999999999999999999999998876655443 2335
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
+.+.|+|.|.+++.+. ...|-+|.+++......+.. +..+.++.|- ++..|++|..|+.|.+
T Consensus 172 t~v~w~~~Gd~F~v~~----------~~~i~i~q~d~A~v~~~i~~-------~~r~l~~~~l-~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSG----------RNKIDIYQLDNASVFREIEN-------PKRILCATFL-DGSELLVGGDNEWISL 233 (362)
T ss_pred eeeEEcCCCCEEEEEe----------ccEEEEEecccHhHhhhhhc-------cccceeeeec-CCceEEEecCCceEEE
Confidence 5699999999888885 35899999998776555432 3356677765 5678899999999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEE--cCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF--SADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
||.++...... +.+|..+|-++.+ .|++.+|++++ ||.|+|||++..
T Consensus 234 ~D~ds~~~~~~-----------~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 234 KDTDSDTPLTE-----------FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eccCCCcccee-----------eecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99988554444 3579999999884 46788999998 999999999865
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=6.8e-25 Score=194.15 Aligned_cols=321 Identities=15% Similarity=0.178 Sum_probs=239.5
Q ss_pred eeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 275 KITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
.+...|.+.|+++...+ .|+++++|+.||.|.+||++.....+...-.... .-.-....-.+|.
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~---------------~c~v~~~h~~~Hk 101 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH---------------KCIVAKQHENGHK 101 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe---------------eeeccccCCccce
Confidence 45667899999999988 7899999999999999999765422211000000 0000112335688
Q ss_pred cceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCC---CeEEEEecCCcEEEEEcCCceEE
Q 040987 354 SEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP---SLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 354 ~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
-.|..+.|-| |...+.+++.|.++++||..+.+.......++.|++-++||-. -++++|..+-.|++.|+.+|...
T Consensus 102 y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s 181 (397)
T KOG4283|consen 102 YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS 181 (397)
T ss_pred eeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce
Confidence 8999999988 5568889999999999999999988888889999999999843 46788888899999999999999
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCE-EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGL-VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
+++.+|. +.|.++.|+|...+ |++|+.||.|++||++...
T Consensus 182 H~LsGHr----------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras----------------------------- 222 (397)
T KOG4283|consen 182 HTLSGHR----------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS----------------------------- 222 (397)
T ss_pred eeecccc----------CceEEEEeccCceeEEEecCCCceEEEEEeeccc-----------------------------
Confidence 9999998 88999999998775 6788999999999996421
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+..++.|...++....+++ ...| .+.+.+++|+.|+.++++++.|..+++|+..+|+
T Consensus 223 --------------------gcf~~lD~hn~k~~p~~~~--n~ah-~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 223 --------------------GCFRVLDQHNTKRPPILKT--NTAH-YGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred --------------------ceeEEeecccCccCccccc--cccc-cceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 2233334333333322321 2567 8999999999999999999999999999998876
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
.....- .-.++.... .-.+. +. +.+.. ++..-.++.+.++++-+|+.+..+..|...|.+.++-|+=+...++
T Consensus 280 ntl~~~--g~~~~n~~~--~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 280 NTLREF--GPIIHNQTT--SFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred cccccc--ccccccccc--cceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 443221 111111000 01111 22 22222 3333348999999999999999999998889999999999999999
Q ss_pred EcCCCCeEEEEEC
Q 040987 668 SWGSKPQLSVWNM 680 (762)
Q Consensus 668 ~~d~~~~v~vwd~ 680 (762)
..|+. +..|-.
T Consensus 354 ~~d~n--i~~w~p 364 (397)
T KOG4283|consen 354 DMNGN--IYMWSP 364 (397)
T ss_pred ccCCc--cccccc
Confidence 99998 999965
No 119
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.94 E-value=6.2e-24 Score=208.33 Aligned_cols=276 Identities=13% Similarity=0.158 Sum_probs=223.5
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
.|.. ++|-|||..|+.+.+..+.|||++.|.++.+|++|.+.|.|++|+.|| +.+|||+.|..|.+|...-.
T Consensus 14 ci~d-~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-------krFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CIND-IAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-------KRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chhe-eEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCC-------ceeccCCCceeEEEeccccc
Confidence 6776 999999999999999999999999999999999999999999999999 67889999999999985421
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
- .....
T Consensus 86 G--------------------------------------------------------------------------~LkYS 91 (1081)
T KOG1538|consen 86 G--------------------------------------------------------------------------ILKYS 91 (1081)
T ss_pred c--------------------------------------------------------------------------eeeec
Confidence 1 12234
Q ss_pred cCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 234 EMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
|...|.|+.|+|-.+.|++++=...-+|........ .......+.+++|..||++|+.|-.+|+|.+-+-.+.
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~-------K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS-------KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhccccChhhhhHH-------hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 778899999999999999888778889988766543 2233467899999999999999999999999875443
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-----CEEEEEecCCeEEEEecCCCcee
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-----AYLYSGGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-----~~l~s~~~dg~i~~wd~~~~~~~ 388 (762)
+.. .+....+...+|++++|+|.. ..+++.....++.++.+.....-
T Consensus 165 ek~----------------------------~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig 216 (1081)
T KOG1538|consen 165 EKV----------------------------KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG 216 (1081)
T ss_pred cce----------------------------EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeec
Confidence 322 123344577899999999853 46777777788888887654433
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY 468 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 468 (762)
.....+-...|+.+-++|.+++.|+.|+.+++|--+ |-.+.++.... .+|..++..|+++.++.|+.||
T Consensus 217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D----------~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQD----------SWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred ccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccc----------eeEEEEEEccCCceEEEEEccC
Confidence 344455567889999999999999999999999755 55555554433 7999999999999999999999
Q ss_pred eEEEEEcCC
Q 040987 469 CIHFYSLLD 477 (762)
Q Consensus 469 ~i~i~d~~~ 477 (762)
+|..|++..
T Consensus 286 TiACyNl~f 294 (1081)
T KOG1538|consen 286 TIACYNLIF 294 (1081)
T ss_pred eeehhhhHH
Confidence 999998754
No 120
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3e-24 Score=222.64 Aligned_cols=261 Identities=12% Similarity=0.123 Sum_probs=192.8
Q ss_pred eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-CcEEEEeecCCeEEEEeccCCceeeccccccccccccccc
Q 040987 254 KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT-QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEE 332 (762)
Q Consensus 254 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 332 (762)
..+.+.+|+...... ...+.+|.+.|.+++|+|+ +++||+|+.||.|++||+..+....
T Consensus 52 ~~gvI~L~~~~r~~~-----v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~--------------- 111 (568)
T PTZ00420 52 LIGAIRLENQMRKPP-----VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV--------------- 111 (568)
T ss_pred ceeEEEeeecCCCce-----EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc---------------
Confidence 357789998776532 2566799999999999996 7899999999999999986532100
Q ss_pred CCCCcccCCccccceeeeccccceeEEEEecCCCE-EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEE
Q 040987 333 ERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (762)
.....++..+.+|...|.+++|+|++.. |++++.|++|++||+++++......+...|.+++|+|+|.+|++
T Consensus 112 -------~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 112 -------KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred -------cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEE
Confidence 0001234567889999999999999876 46889999999999999887654456678999999999999999
Q ss_pred EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc----eEEEEEcCC-CCceeeEEe
Q 040987 412 SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY----CIHFYSLLD-DRGISEVQV 486 (762)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~ 486 (762)
++.|+.|++||+++++.+..+.+|..... ...+....|++++.+|++++.++ +|++||++. .+.+.....
T Consensus 185 ~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~-----s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQEIASSFHIHDGGKN-----TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred EecCCEEEEEECCCCcEEEEEecccCCce-----eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence 99999999999999999999988873210 01122234568999999988764 799999985 444433322
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
... ...+......++|.++++|. +|+.|++|++..+. ...+.. ..+ ..++.+++|.|.
T Consensus 260 d~~--------~~~L~p~~D~~tg~l~lsGk---------GD~tIr~~e~~~~~-~~~l~~---~~s-~~p~~g~~f~Pk 317 (568)
T PTZ00420 260 DNA--------SAPLIPHYDESTGLIYLIGK---------GDGNCRYYQHSLGS-IRKVNE---YKS-CSPFRSFGFLPK 317 (568)
T ss_pred cCC--------ccceEEeeeCCCCCEEEEEE---------CCCeEEEEEccCCc-EEeecc---ccc-CCCccceEEccc
Confidence 111 23334444456688999998 99999999998763 333322 123 667889999997
Q ss_pred CC
Q 040987 567 RR 568 (762)
Q Consensus 567 ~~ 568 (762)
..
T Consensus 318 r~ 319 (568)
T PTZ00420 318 QI 319 (568)
T ss_pred cc
Confidence 43
No 121
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=220.42 Aligned_cols=352 Identities=14% Similarity=0.189 Sum_probs=269.3
Q ss_pred CCCCEEE-EEeCCeEEEEEccCchhhh-heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccc
Q 040987 245 SSGKYFG-IRKQRKLLIWKVPDVEAER-VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNK 322 (762)
Q Consensus 245 pdg~~la-~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 322 (762)
|.+++|. +|.||.|++|+........ .+....+..|.+.|+.++...+++.|++++.|-+|++|+......
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------- 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------- 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-------
Confidence 5677676 5689999999987554321 122355678999999999999999999999999999999865532
Q ss_pred ccccccccccCCCCcccCCccccceeeeccccceeEEEE-ecCCCEEEEEecCCeEEEEecCCCce-----------ecc
Q 040987 323 MNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF-SSDGAYLYSGGKEGVLVVWQLDTGKK-----------KFL 390 (762)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~g~~l~s~~~dg~i~~wd~~~~~~-----------~~~ 390 (762)
-+..++..|.+.|.|++. .++...+++||-|+.|.+||+.++.. ..+
T Consensus 108 ---------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 108 ---------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred ---------------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 246788899999999999 77888999999999999999998733 112
Q ss_pred C-CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce
Q 040987 391 P-RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC 469 (762)
Q Consensus 391 ~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 469 (762)
. ++...+++++.++.|..++.|+..+.+++||.++.+.+..+.+|. ..|..+..++||..+++++.||+
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT----------dNVr~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT----------DNVRVLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc----------cceEEEEEcCCCCeEeecCCCce
Confidence 2 556789999999999999999999999999999999999999998 78899999999999999999999
Q ss_pred EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 470 IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
|++||+...+++.++..+ ...|.++..+|+-..+.+|+ .|+.|..-|+.+......+-.
T Consensus 237 IrlWdLgqQrCl~T~~vH----------~e~VWaL~~~~sf~~vYsG~---------rd~~i~~Tdl~n~~~~tlick-- 295 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVH----------KEGVWALQSSPSFTHVYSGG---------RDGNIYRTDLRNPAKSTLICK-- 295 (735)
T ss_pred EEeeeccccceeeeEEec----------cCceEEEeeCCCcceEEecC---------CCCcEEecccCCchhheEeec--
Confidence 999999999888887664 55699999999999999999 899999999988533322211
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCC
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET 629 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~ 629 (762)
+ ..+|..+..+...+-+-+++.|+.|+-|..... ..+++.|++....+|.
T Consensus 296 -~---daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~--------------------------~~l~~s~~~~~~~T~~ 345 (735)
T KOG0308|consen 296 -E---DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD--------------------------IALSVSGDLDFFSTDS 345 (735)
T ss_pred -C---CCchhhhhhccccCCceeeeccccceecCCccc--------------------------cccccCCCCCcccccC
Confidence 2 346777777755555567788999999976421 2455555555544455
Q ss_pred eEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 630 VITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
...+++... ..-.++.|. .+|..-+.-.|.+++++-...|. +.+||+-.+...-.|
T Consensus 346 ~~~~~~~~~-tp~~vi~Gg-~ai~k~~mL~dkRhVlTkDa~gn--v~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 346 NNHSCDLTN-TPDSVIPGG-AAIKKHAMLNDKRHVLTKDAKGN--VALWDILACVKVEDF 401 (735)
T ss_pred CCccccccC-CCceeccCc-hhhhhhhhhcCcceEeeecCCCC--EEEEEeeeeeehhhc
Confidence 555555432 122223221 23445555667788888877776 888888766555444
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=9.5e-26 Score=213.75 Aligned_cols=286 Identities=16% Similarity=0.241 Sum_probs=232.1
Q ss_pred CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEE
Q 040987 112 GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYL 191 (762)
Q Consensus 112 ~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (762)
.|..-|.++.+|... ++++||+. |.|+|||+.... ...++..+
T Consensus 417 ~HGEvVcAvtIS~~t-------rhVyTgGk-gcVKVWdis~pg------~k~PvsqL----------------------- 459 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPT-------RHVYTGGK-GCVKVWDISQPG------NKSPVSQL----------------------- 459 (705)
T ss_pred ccCcEEEEEEecCCc-------ceeEecCC-CeEEEeeccCCC------CCCccccc-----------------------
Confidence 488889999999988 78889985 789999997541 11122222
Q ss_pred EeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhh
Q 040987 192 SVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAER 270 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~ 270 (762)
........++++.++|||+.|++ |.-.++.|||+.....
T Consensus 460 --------------------------------------dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-- 499 (705)
T KOG0639|consen 460 --------------------------------------DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-- 499 (705)
T ss_pred --------------------------------------cccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc--
Confidence 01112456778899999998875 4678999999998765
Q ss_pred heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 271 VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
.++..+....-...+++.+||.+..+++..||.|.|||+.+. ..++.|+
T Consensus 500 -rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------------------------------~~Vrqfq 548 (705)
T KOG0639|consen 500 -RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------------------------------TLVRQFQ 548 (705)
T ss_pred -chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------------------------------eeeeccc
Confidence 233344444456778999999999999999999999999765 3457899
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
+|.+.+.|+.+++||..|-+|+-|.+|+.||+++++......+...|.++.++|++.++++|-.++.+.+......+ ..
T Consensus 549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-ky 627 (705)
T KOG0639|consen 549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KY 627 (705)
T ss_pred CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ce
Confidence 99999999999999999999999999999999999988777788899999999999999999999999988876432 33
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
.+..|. +-|.++.|.+-|+++++.+.|+.+-.|...-+..+..... ...|.+..+|.|.
T Consensus 628 qlhlhe----------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-----------~SsVlsCDIS~dd 686 (705)
T KOG0639|consen 628 QLHLHE----------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-----------SSSVLSCDISFDD 686 (705)
T ss_pred eecccc----------cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-----------cCcceeeeeccCc
Confidence 343343 7899999999999999999999999999988876655433 6679999999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEe
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVS 536 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~ 536 (762)
+++++|+ +|..-.+|.+
T Consensus 687 kyIVTGS---------GdkkATVYeV 703 (705)
T KOG0639|consen 687 KYIVTGS---------GDKKATVYEV 703 (705)
T ss_pred eEEEecC---------CCcceEEEEE
Confidence 9999999 7777777765
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.3e-26 Score=194.38 Aligned_cols=251 Identities=18% Similarity=0.243 Sum_probs=205.3
Q ss_pred eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc---eEEeeecCCccceeEEEEeC--CCCcccceeeeEEeee
Q 040987 67 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHKAPVTTVIVVP--ASTPATKILSYCWTAS 140 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~---~~~~~l~~h~~~V~~v~~s~--~~~~~~~l~~~l~s~s 140 (762)
.-..|++.|.. +.+.--|++||+++ |++|+|+.+..+ +++.+|.||.++|+.++|.. -| .+|||++
T Consensus 6 idt~H~D~IHd-a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-------~iLAScs 77 (299)
T KOG1332|consen 6 IDTQHEDMIHD-AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-------TILASCS 77 (299)
T ss_pred hhhhhhhhhhH-hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-------cEeeEee
Confidence 34679999997 88999999999999 899999999755 47889999999999999987 67 7899999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.||.|.||.-.+|+-.+.
T Consensus 78 YDgkVIiWke~~g~w~k~-------------------------------------------------------------- 95 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKA-------------------------------------------------------------- 95 (299)
T ss_pred cCceEEEEecCCCchhhh--------------------------------------------------------------
Confidence 999999999887743221
Q ss_pred cCCccccceeeeccCCCceEEEECCCCC--EEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC---C-
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSSGK--YFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT---Q- 293 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spdg~--~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~- 293 (762)
.....|...|++++|.|.+- .|| +++||.|.|.+.+....- ...++...|.-.|++++|.|- |
T Consensus 96 --------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w--~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 96 --------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW--TTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred --------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--cchhhhhccccccceeeecCcCCCcc
Confidence 12345788899999999754 455 458999999998876322 344677899999999999995 5
Q ss_pred ----------cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 294 ----------RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 294 ----------~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
+.|++|+.|..|+||+...++ +.....+.+|.+.|..++|.|
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----------------------------w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----------------------------WKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcc----------------------------hhhhhhhhhcchhhhhhhhcc
Confidence 579999999999999986652 233466999999999999998
Q ss_pred CC----CEEEEEecCCeEEEEecCCCc----eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 364 DG----AYLYSGGKEGVLVVWQLDTGK----KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 364 ~g----~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
.- .+|++++.||++.+|..+... ...+...+..+..+.||..|+.|++++.|+.+.+|.-..
T Consensus 218 ~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 54 579999999999999776321 134555778899999999999999999999999997654
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.4e-25 Score=208.21 Aligned_cols=300 Identities=14% Similarity=0.208 Sum_probs=232.7
Q ss_pred eEEeeecCC-eEEEEeCCCcceEEEEEecc--ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCC
Q 040987 135 YCWTASLDG-TIKYWDFSVPELLKTIDVKF--SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNT 211 (762)
Q Consensus 135 ~l~s~s~d~-~i~vWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 211 (762)
++.+++.|. .+.+||+.+|...-++++.. +..++.. -....+. ++-.
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~------------l~~~yll------------------saq~ 58 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA------------LNNEYLL------------------SAQL 58 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhh------------hchhhee------------------eecc
Confidence 334455564 49999999999988887652 1111110 0000000 2223
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH 290 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 290 (762)
....|.+|.+....... ...--.+.+.+++-+|+|.+|++| ..+.|++|.+.+|... .+...|-..|+|+.|+
T Consensus 59 ~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-----~v~~aHYQ~ITcL~fs 132 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL-----NVLSAHYQSITCLKFS 132 (476)
T ss_pred cCccccccccCchhhhh-hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHH-----HHHHhhccceeEEEEe
Confidence 44578888887666552 344467889999999999999977 8999999999999987 6778999999999999
Q ss_pred CCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC--CEE
Q 040987 291 PTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG--AYL 368 (762)
Q Consensus 291 p~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l 368 (762)
.||.++++|+.||.|.+|.+..--. .. ...+.++...|..|.-+|+++...+.| .+|
T Consensus 133 ~dgs~iiTgskDg~V~vW~l~~lv~--------------a~-------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 133 DDGSHIITGSKDGAVLVWLLTDLVS--------------AD-------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred CCCcEEEecCCCccEEEEEEEeecc--------------cc-------cCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 9999999999999999998732200 00 011446788999999999999887653 689
Q ss_pred EEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc----------------eEEEEE
Q 040987 369 YSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM----------------EIIRSI 432 (762)
Q Consensus 369 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~~ 432 (762)
++++.|.++++||+..+........+..+.+++.+|.+..+++|+.+|.|.+.++... ..+..+
T Consensus 192 ~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~ 271 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL 271 (476)
T ss_pred EEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee
Confidence 9999999999999999999888888899999999999999999999999998887542 233445
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.+|.. +..|++++++-||..|++|+.||.+++||+.+.+.++++... .++|+.+.+.|=
T Consensus 272 ~Gh~~--------~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~----------kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 272 VGHEN--------ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS----------KGPVTNLQINPL 330 (476)
T ss_pred ccccC--------CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh----------ccccceeEeecc
Confidence 55552 138999999999999999999999999999999888777632 567888888664
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2e-25 Score=211.57 Aligned_cols=283 Identities=14% Similarity=0.239 Sum_probs=234.4
Q ss_pred eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee--cccc
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH--WHPS 354 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 354 (762)
...|..-|.++++|...+++.+|+ .|.|+|||+...... .++..+. ....
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k---------------------------~PvsqLdcl~rdn 466 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNK---------------------------SPVSQLDCLNRDN 466 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCC---------------------------CccccccccCccc
Confidence 346888899999999999999986 577999998544211 1222222 2345
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.|.++...|||+.|++|+.-.++.|||+....... +....-..++++.+||.+..++++.||.|.|||+.+...++.
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq 546 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ 546 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec
Confidence 68899999999999999999999999999876643 222334577889999999999999999999999999999999
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
|.+|. ..+.++.+++||..|-+|+-|++|+.||+++++.+..... ...|.++..+|++.
T Consensus 547 fqGht----------DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF-----------~SQIfSLg~cP~~d 605 (705)
T KOG0639|consen 547 FQGHT----------DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-----------SSQIFSLGYCPTGD 605 (705)
T ss_pred ccCCC----------CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh-----------hhhheecccCCCcc
Confidence 99998 7889999999999999999999999999999876655433 56699999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
++++|- ..+.+.+......+. +.+ .-| ...|.++.|.+.|+++++.+.|+.+..|...-|..+.
T Consensus 606 WlavGM---------ens~vevlh~skp~k-yql-----hlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 606 WLAVGM---------ENSNVEVLHTSKPEK-YQL-----HLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred ceeeec---------ccCcEEEEecCCccc-eee-----ccc-ccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 999998 777888877665443 233 346 8899999999999999999999999999998887766
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
..+ ....|.++.+|.|.++|++|+ |....||.+
T Consensus 670 qsk------------E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 670 QSK------------ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecc------------ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 553 468899999999999999998 888888865
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.1e-23 Score=212.42 Aligned_cols=283 Identities=15% Similarity=0.144 Sum_probs=208.5
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCc
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLS-SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (762)
+.+++++.|+.+++||+.+++..........+..++|+|+++.+ +++..++.+++||..+++....+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------- 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-------- 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC--------
Confidence 56888999999999999988875544444557789999999977 456678999999999988877665432
Q ss_pred ccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 445 YKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
.+..++++|+++.++++ ..++.+++||+.+.+.+..+.. ...+..++|+|+|++++++..
T Consensus 74 ---~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~----- 134 (300)
T TIGR03866 74 ---DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------GVEPEGMAVSPDGKIVVNTSE----- 134 (300)
T ss_pred ---CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------CCCcceEEECCCCCEEEEEec-----
Confidence 34578999999977655 4689999999988765544432 223578999999999998872
Q ss_pred CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeee
Q 040987 524 GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 524 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
....+.+||..+.+....+. . ......++|+|++++|+++ ..++.|++||+.+++....+. +...
T Consensus 135 ---~~~~~~~~d~~~~~~~~~~~----~---~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~---~~~~- 200 (300)
T TIGR03866 135 ---TTNMAHFIDTKTYEIVDNVL----V---DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT---FEIP- 200 (300)
T ss_pred ---CCCeEEEEeCCCCeEEEEEE----c---CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee---eccc-
Confidence 22457788988765543321 1 2345779999999988655 458999999999886654431 0000
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEE-c-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEE-cCCCCeEEEEE
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVA-A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATS-WGSKPQLSVWN 679 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~-~d~~~~v~vwd 679 (762)
...........++|+|+|++++++ . ++.+.+||+++++.+..+. +...+.+++|+|+|++|++++ .++. |++||
T Consensus 201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~--i~v~d 277 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSND--VSVID 277 (300)
T ss_pred ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCe--EEEEE
Confidence 000011234568999999986654 3 7789999999998876654 345789999999999999874 5777 99999
Q ss_pred CCCCceeeEEEEe
Q 040987 680 MSKLSISWSYLLH 692 (762)
Q Consensus 680 ~~~~~~~~~~~~~ 692 (762)
+.+++.+..++..
T Consensus 278 ~~~~~~~~~~~~~ 290 (300)
T TIGR03866 278 VAALKVIKSIKVG 290 (300)
T ss_pred CCCCcEEEEEEcc
Confidence 9999998888754
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.2e-24 Score=191.13 Aligned_cols=279 Identities=18% Similarity=0.177 Sum_probs=223.8
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
..+.|..+.|+|.+..|+.++.||++++||+..........+..++.+++|.+ ...+++|+.||.|+.+|+.++.....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee
Confidence 45679999999999999999999999999999998888889999999999977 56788899999999999998765544
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
. .|. ..+.++.+++....+++|+.|++|++||.+.......+.. ...|.++.. .|.
T Consensus 91 g-th~----------~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-----------~kkVy~~~v--~g~ 146 (323)
T KOG1036|consen 91 G-THD----------EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-----------GKKVYCMDV--SGN 146 (323)
T ss_pred c-cCC----------CceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----------CceEEEEec--cCC
Confidence 3 333 7889999999888999999999999999987443333322 334666554 567
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
.|++|. .+..+.+||++......+... ..- .-.++++++-|++.-++.++-||.|.+=.++......
T Consensus 147 ~LvVg~---------~~r~v~iyDLRn~~~~~q~re---S~l-kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 147 RLVVGT---------SDRKVLIYDLRNLDEPFQRRE---SSL-KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred EEEEee---------cCceEEEEEcccccchhhhcc---ccc-eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 888877 789999999998776553322 122 5578999999998889999999999886666552221
Q ss_pred cccCCceeeeeecccC---CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEE
Q 040987 592 DLQSSGWSCHAVGSYK---KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~---~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
.....+.||...... -.+|++++|+|--..+|+|+ ||.|.+||..+.+.+..+..-...|.+++|+.||..||.+
T Consensus 214 -skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 214 -SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred -hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 123366777655432 24788999999988999998 9999999999999999997777779999999999999999
Q ss_pred Ec
Q 040987 668 SW 669 (762)
Q Consensus 668 ~~ 669 (762)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.1e-24 Score=190.61 Aligned_cols=277 Identities=14% Similarity=0.172 Sum_probs=217.6
Q ss_pred eccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 278 LHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
....+.|.++.|+|.+..|++++.||.+++|++.... +...-.|..++.
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-------------------------------l~~~~~~~~plL 58 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-------------------------------LKLKFKHGAPLL 58 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-------------------------------hhhheecCCcee
Confidence 3446789999999999999999999999999986552 123334888999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
+++|.++ ..+++|+-||.|+.+|+.++....+..|..++.++.+++....+++|+.|+.|++||.+.......+...
T Consensus 59 ~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-- 135 (323)
T KOG1036|consen 59 DCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-- 135 (323)
T ss_pred eeeccCC-ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--
Confidence 9999864 5899999999999999999999999999999999999998899999999999999999974444444322
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
..|.++..+ ++.|++|+.+..+.+||+++......... .. ....+.++++-|++.-+++++
T Consensus 136 ---------kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~re--S~------lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 136 ---------KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRE--SS------LKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred ---------ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhcc--cc------ceeEEEEEEEecCCCceEEEe
Confidence 356655544 67899999999999999998765432211 11 166799999999888888888
Q ss_pred eeccccCCCceeEEEEEEecCC----CceeEEEEEeecCCC---CCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQ----NKEFTLSTIVYEPHR---DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~h~---~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
-+|.|.+=.++.. +..+.++........ --+|++++|+|-...||+|+.||.|.+||+.+.+..
T Consensus 197 ---------ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 197 ---------IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred ---------ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 6777777666555 333444322111000 136899999999999999999999999999999888
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
..+. .....|.+++|+.||..||+++
T Consensus 268 ~q~~-----------~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 268 KQLA-----------KYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred hhcc-----------CCCCceEEEEeccCCCeEEEEe
Confidence 7773 2356799999999999999985
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.2e-24 Score=213.09 Aligned_cols=284 Identities=18% Similarity=0.222 Sum_probs=231.0
Q ss_pred eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEE--EEeccceEEEeecccccCCcccCC
Q 040987 105 LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKT--IDVKFSIFSMVIPSLLRQPAQSDE 182 (762)
Q Consensus 105 ~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~ 182 (762)
++-+.+.||...|..+++.+.. +++++|.|+++++|+-..++.+.. +..+.......
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--------~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~------------- 63 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--------CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANS------------- 63 (745)
T ss_pred eeEEEeccCccchheeEecCCe--------EEeecCCCCceeeeeccCcccccceecccCcceeecc-------------
Confidence 5678899999999999988776 678999999999999877665543 33332221110
Q ss_pred CCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEE
Q 040987 183 KPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWK 262 (762)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd 262 (762)
++|.+ .+...+ .+|+.|.++.+|.+...... ..+.+|...|.++....++.+|.++.|.++++|.
T Consensus 64 -----i~y~e-~~~~~l--------~~g~~D~~i~v~~~~~~~P~-~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 64 -----ICYAE-SDKGRL--------VVGGMDTTIIVFKLSQAEPL-YTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWR 128 (745)
T ss_pred -----ceecc-ccCcce--------EeecccceEEEEecCCCCch-hhhhccccceeeeecCCcCceEecccccceEEec
Confidence 12221 111111 67899999999999999998 8899999999999999999966677899999998
Q ss_pred ccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc
Q 040987 263 VPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD 342 (762)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (762)
..... ....+|...|.+++.-|++ .+++|+.|.+|++|.-.
T Consensus 129 ~~~l~-------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~------------------------------- 169 (745)
T KOG0301|consen 129 IGELV-------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG------------------------------- 169 (745)
T ss_pred chhhh-------cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-------------------------------
Confidence 76544 4588999999999999988 78899999999999852
Q ss_pred cccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 343 ADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
+.++++.+|.+.|..+++-+++ .+++++.||.|++|++.........+|..-++++....++..++++++|++++||+
T Consensus 170 -~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 170 -TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred -chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence 3568999999999999998875 68899999999999996655667889999999999889999999999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
.. ++.+.+.-.. -.++++.+-++|. +++|+.||.|++|.....
T Consensus 248 ~~--e~~q~I~lPt----------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 248 KD--ECVQVITLPT----------TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cC--ceEEEEecCc----------cceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 87 6666665443 5788999888886 788899999999988644
No 130
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8e-24 Score=189.55 Aligned_cols=262 Identities=17% Similarity=0.228 Sum_probs=212.0
Q ss_pred EEEEecCCeEEEEecCCCc--------e-----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 368 LYSGGKEGVLVVWQLDTGK--------K-----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~--------~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
|+.|+....|.-+++.-.. . .....|.+.+++++. ++.++++|+.|.+|+|||+.....+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 5666666666666554322 1 124567788999986 578999999999999999999888888888
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCC--EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGG--LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
|. +.|+++.|.++-. .|++|+.||.|.+|+...-..+..+.. | ...|+.++++|.|++
T Consensus 82 Ha----------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~----H------~~~Vt~lsiHPS~KL 141 (362)
T KOG0294|consen 82 HA----------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA----H------KGQVTDLSIHPSGKL 141 (362)
T ss_pred cc----------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc----c------ccccceeEecCCCce
Confidence 77 8999999999765 899999999999999988765555443 3 666999999999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
.++.+ +|+.++.||+-.++.-+.+.- ...-+.+.|+|.|.+++.++.++ |-+|.+.+......
T Consensus 142 ALsVg---------~D~~lr~WNLV~Gr~a~v~~L-------~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 142 ALSVG---------GDQVLRTWNLVRGRVAFVLNL-------KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFRE 204 (362)
T ss_pred EEEEc---------CCceeeeehhhcCccceeecc-------CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhh
Confidence 98888 999999999999987666542 23445599999999999888765 99999988877666
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEE--eCCCCEEEEEEc
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSF--VGSSEYLVATSW 669 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~--s~dg~~l~s~~~ 669 (762)
.. ....+.++.|- ++..|++|. |+.|.+||.+++.+...+.+|..+|.++.+ .|++.+|+|+|.
T Consensus 205 i~------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 205 IE------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred hh------------ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 53 22456677774 455677776 899999999999999999999999999984 457899999999
Q ss_pred CCCCeEEEEECCCC
Q 040987 670 GSKPQLSVWNMSKL 683 (762)
Q Consensus 670 d~~~~v~vwd~~~~ 683 (762)
||. |++||++..
T Consensus 272 DG~--I~vWd~~~~ 283 (362)
T KOG0294|consen 272 DGF--IKVWDIDME 283 (362)
T ss_pred Cce--EEEEEcccc
Confidence 999 999999877
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=214.19 Aligned_cols=261 Identities=15% Similarity=0.260 Sum_probs=216.0
Q ss_pred eeEEEEecCCCeEEEEecCCcceee---eecCcccccCCceeec-CCCEEEEEe-CCEEEEEEcccceEEeeecCCccce
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSKM---IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPV 117 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~~---~~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V 117 (762)
..+++.++.||++++|+-..++... +.+|.+-|.+.+++-+ |+-.|++|+ |..|.+|......++.+|+||...|
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV 104 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV 104 (745)
T ss_pred CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccce
Confidence 5578899999999999998766654 6888888876677774 555577777 8999999999999999999999999
Q ss_pred eEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeec
Q 040987 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDT 196 (762)
Q Consensus 118 ~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (762)
+|++...++ . ++|||.|.|++||-. +++...+.+|. .|+++.+ -++.. |
T Consensus 105 C~ls~~~~~-------~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~--------l~e~~------~------ 154 (745)
T KOG0301|consen 105 CSLSIGEDG-------T-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVAS--------LPENT------Y------ 154 (745)
T ss_pred eeeecCCcC-------c-eEecccccceEEecc--hhhhcccCCcchheeeeee--------cCCCc------E------
Confidence 999998888 3 779999999999974 57777788888 7777643 01110 0
Q ss_pred cccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee
Q 040987 197 RETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI 276 (762)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~ 276 (762)
++|+.|.+|++|.- ++.+ ..+.+|...|+.+++-+++.+|.++.||.|+.|++ ++++. ..
T Consensus 155 -----------vTgsaDKtIklWk~--~~~l-~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l-----~~ 214 (745)
T KOG0301|consen 155 -----------VTGSADKTIKLWKG--GTLL-KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVL-----LE 214 (745)
T ss_pred -----------EeccCcceeeeccC--Cchh-hhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCcee-----ee
Confidence 78999999999987 5555 56778999999999999999999999999999999 45544 67
Q ss_pred eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
..+|+.-|.+++..+++..+++++.|+++++|+.. ++.+.+.-....|
T Consensus 215 ~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--------------------------------e~~q~I~lPttsi 262 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--------------------------------ECVQVITLPTTSI 262 (745)
T ss_pred eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--------------------------------ceEEEEecCccce
Confidence 77999999999988888899999999999999974 2345555555689
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+++.+-++|. +++|+.||.|++|..+..+
T Consensus 263 Wsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 263 WSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 9999988884 7788899999999877443
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=215.11 Aligned_cols=278 Identities=15% Similarity=0.277 Sum_probs=227.8
Q ss_pred eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
...|..+-+.++|.|+|++|++++.||.|++|+...... ....+.-+...|
T Consensus 9 Ryaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------------------~P~ti~~~g~~v 59 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------------------EPETIDISGELV 59 (933)
T ss_pred hhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------------------CCchhhccCcee
Confidence 347889999999999999999999999999998644311 112222266667
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
.+++. ++.+|++++.+++|.+|.+..++.. .+....-++.+++++.+|++++.|+.|-.|++.++.+......+.+|
T Consensus 60 ~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh 137 (933)
T KOG1274|consen 60 SSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH 137 (933)
T ss_pred EEEee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc
Confidence 77765 4569999999999999999999886 56677789999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 515 (762)
. +.|.++.|+|.+++||+.+-||.|++||+.++.....+.......... ....+..++|+|+|..+++
T Consensus 138 ~----------apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~--~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 138 D----------APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI--LSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred C----------CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc--ccceeeeeeecCCCCeEEe
Confidence 8 889999999999999999999999999999988776665443322111 1345788999999777777
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccC
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 595 (762)
.. .|+.|++|+..+....+.+.. ..+ ...+..+.|+|+|+|||+++.||.|.|||.++-.. .
T Consensus 206 ~~---------~d~~Vkvy~r~~we~~f~Lr~---~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~---- 267 (933)
T KOG1274|consen 206 PP---------VDNTVKVYSRKGWELQFKLRD---KLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H---- 267 (933)
T ss_pred ec---------cCCeEEEEccCCceeheeecc---ccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c----
Confidence 76 789999999999988877753 334 55599999999999999999999999999987332 1
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
.....|++++|.|++.-+-.
T Consensus 268 ----------~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 268 ----------EFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred ----------cccceeEEEecCCCCCeeEE
Confidence 13578999999998876644
No 133
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-21 Score=199.20 Aligned_cols=475 Identities=13% Similarity=0.143 Sum_probs=309.3
Q ss_pred ecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceE
Q 040987 110 LEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 110 l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
+.|-...=..-.||+|+ ++++... +..|+||...+|++++.+..|. ++.++.+ +.+.....
T Consensus 12 lgg~n~~~~~avfSnD~-------k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~----------~~~~~~~~ 73 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDA-------KFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIV----------LPSSENAN 73 (792)
T ss_pred eccccceecccccccCC-------cEEEEee-CCEEEEEecchHhhhhhcccccCccceeee----------cCCCccce
Confidence 44444444455799999 4554443 5789999999999999999887 7777754 11111111
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCC---CCEEE--EEeC--------
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS---GKYFG--IRKQ-------- 255 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spd---g~~la--~~~~-------- 255 (762)
.. ++++.+|.|++||...+..++.... ..++..+.+.|. -...+ ...+
T Consensus 74 ~~-----------------~~~sl~G~I~vwd~~~~~Llkt~~~--~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s 134 (792)
T KOG1963|consen 74 YL-----------------IVCSLDGTIRVWDWSDGELLKTFDN--NLPVHALVYKPAQADISANVYVSVEDYSILTTFS 134 (792)
T ss_pred EE-----------------EEEecCccEEEecCCCcEEEEEEec--CCceeEEEechhHhCccceeEeecccceeeeecc
Confidence 11 4578999999999999998843332 333444333221 11111 1111
Q ss_pred ----CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccc
Q 040987 256 ----RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNE 331 (762)
Q Consensus 256 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 331 (762)
+.++-+.+.+... ....+...|.. -.++.+++.|.+.+..- +..+.+|..........
T Consensus 135 ~~~~~q~~~~~~~t~~~---~~~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~------------- 196 (792)
T KOG1963|consen 135 KKLSKQSSRFVLATFDS---AKGDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTS------------- 196 (792)
T ss_pred cccccceeeeEeeeccc---cchhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEecccceeec-------------
Confidence 1111111111110 01112222322 46788888888766654 45688898766431110
Q ss_pred cCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC-----CceeccCCCCCCeEEEEeCCCC
Q 040987 332 EERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT-----GKKKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~-----~~~~~~~~~~~~v~~~~~s~~~ 406 (762)
....-..|.-.+++.+++|++++++++..||.|.+|.--. .....+.-|..+|.+++|+++|
T Consensus 197 -------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 197 -------------SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred -------------cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC
Confidence 0112233666789999999999999999999999996433 2234566788899999999999
Q ss_pred CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
.+|++|+..+.+.+|.+.+++ .+-+.... +.|..+.++||+.+.+....|+.|.+....+......+..
T Consensus 264 ~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLg----------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 264 AYLLSGGREGVLVLWQLETGK-KQFLPRLG----------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISG 332 (792)
T ss_pred ceEeecccceEEEEEeecCCC-cccccccC----------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccC
Confidence 999999999999999999977 22233222 7889999999999999999999999998866544433332
Q ss_pred ecccccC-CCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCC------ceE
Q 040987 487 CERNHQP-GDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDA------GIS 559 (762)
Q Consensus 487 ~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~------~v~ 559 (762)
....... ......-.+.+.++|.-+.++..+ ..+.|.+||+.+...++.+.......+ .+ .++
T Consensus 333 i~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---------~~g~vQ~ydl~td~~i~~~~v~~~n~~-~~~~n~~v~it 402 (792)
T KOG1963|consen 333 IKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---------HPGHVQFYDLYTDSTIYKLQVCDENYS-DGDVNIQVGIT 402 (792)
T ss_pred ccCCCccccccccccceeEEEcCCCCceeecC---------CCceEEEEeccccceeeeEEEEeeccc-CCcceeEEeee
Confidence 2211000 011145577889999666666665 779999999999988887776444433 33 467
Q ss_pred EEEEcCCCCeEEEEe--------CCC--cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCC-Cc-EEEEEc
Q 040987 560 AVAFHPNRRAAVSSS--------YGG--DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSAD-GS-VLAVAA 627 (762)
Q Consensus 560 ~~~~spd~~~l~~~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-g~-~la~~~ 627 (762)
.++.+-.|.++++.- .|| .+++|-......-..+ .......|+..+...++.+. .. ..++++
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L------~T~I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFIL------NTKINNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEE------EEEEecCCCceeEEEEEecCcccceeEEec
Confidence 788888899998874 233 4778877655443322 12233456666666555542 22 677776
Q ss_pred -CCeEEEEeCCCC----------eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 628 -ETVITLWDPDRN----------VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 628 -d~~i~iwd~~~~----------~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
||.++||-+.+. .|...-.-|..++.+++|+.||..|+.+ .|+. |.+||..+
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~--Itiwd~~~ 539 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDT--ITIWDYDT 539 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCE--EEEecCCC
Confidence 999999988432 2333333478899999999999655555 5555 99999988
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.9e-23 Score=202.78 Aligned_cols=327 Identities=13% Similarity=0.134 Sum_probs=246.7
Q ss_pred ecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEE
Q 040987 59 EYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCW 137 (762)
Q Consensus 59 ~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~ 137 (762)
.+++.....+.||++.|.+ +...|.|.+||+|+ ||+|+||.+.||+++++.. -.+.|.||+|+|.+. + .+||
T Consensus 387 PFPt~~~lvyrGHtg~Vr~-iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~----~-~vLA 459 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRS-ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSD----L-CVLA 459 (733)
T ss_pred CCcceeeeeEeccCCeEEE-EEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCC----c-eeEE
Confidence 3456667778999999998 99999999999999 6999999999999999887 456899999999985 2 2344
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
.+- ...+.|-+..-|..+..-.......+. + .-...++.+.
T Consensus 460 vA~-~~~~~ivnp~~G~~~e~~~t~ell~~~-----------------------~---------------~~~~p~~~~~ 500 (733)
T KOG0650|consen 460 VAV-GECVLIVNPIFGDRLEVGPTKELLASA-----------------------P---------------NESEPDAAVV 500 (733)
T ss_pred EEe-cCceEEeCccccchhhhcchhhhhhcC-----------------------C---------------CccCCcccce
Confidence 444 444777776666433221111110000 0 0012445677
Q ss_pred EEecCCccccc---eeeeccCCCceEEEECCCCCEEEEE----eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc
Q 040987 218 KCNLTESRLAG---GVTLAEMKEPQVITISSSGKYFGIR----KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH 290 (762)
Q Consensus 218 iwd~~~~~~~~---~~~~~~~~~v~~~~~spdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 290 (762)
.|.-....... .....|...|..+.|+..|.|||+. ....|.|.++.....+ .-+....+.|.++.|+
T Consensus 501 ~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-----~PF~kskG~vq~v~FH 575 (733)
T KOG0650|consen 501 TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-----SPFRKSKGLVQRVKFH 575 (733)
T ss_pred eechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-----CchhhcCCceeEEEec
Confidence 78765433332 4677799999999999999999853 4578999999877654 3444556789999999
Q ss_pred CCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEE
Q 040987 291 PTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYS 370 (762)
Q Consensus 291 p~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 370 (762)
|...+|++++. ..|++||+... ..++.+......|..++.+|.|..|+.
T Consensus 576 Ps~p~lfVaTq-~~vRiYdL~kq------------------------------elvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 576 PSKPYLFVATQ-RSVRIYDLSKQ------------------------------ELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred CCCceEEEEec-cceEEEehhHH------------------------------HHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 99999988864 57999998654 234555566678999999999999999
Q ss_pred EecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC------C---ceEEEEEccCCCCC
Q 040987 371 GGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP------S---MEIIRSISGIKLPC 439 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~------~---~~~~~~~~~~~~~~ 439 (762)
++.|+.+..+|++-... ..+..|...+.+++|++.-.++++++.||++.|+.-. . --+++.+.+|....
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 99999999999887643 5677888899999999999999999999999988532 1 23456677776321
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEE
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFY 473 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 473 (762)
+..|....|+|...+|++++.||+|++|
T Consensus 705 ------~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 ------DLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------ccceEeecccCCCceEEecCCCceEEee
Confidence 1357888999999999999999999998
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.5e-23 Score=182.15 Aligned_cols=298 Identities=18% Similarity=0.243 Sum_probs=223.8
Q ss_pred eeeecCcccccCCceeec-CCCEEEEEe-CCEEEEEEcccce------EE---------eeecCCccceeEEEEeCCCCc
Q 040987 66 KMIRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGL------QI---------SSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~~~------~~---------~~l~~h~~~V~~v~~s~~~~~ 128 (762)
...+.|.+.|.. +.+.+ .|+|+++|+ ||.|.|||++... ++ ..-.+|.-.|..+.|.|-.+
T Consensus 37 d~~r~HgGsvNs-L~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt- 114 (397)
T KOG4283|consen 37 DFVRPHGGSVNS-LQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT- 114 (397)
T ss_pred ceeccCCCccce-eeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-
Confidence 345778899997 88876 589999999 8999999997543 11 11247889999999999876
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (762)
..+.|+|.|.+++|||.++-+..-.|+....|.
T Consensus 115 -----GmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VY------------------------------------------ 147 (397)
T KOG4283|consen 115 -----GMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVY------------------------------------------ 147 (397)
T ss_pred -----ceeecccccceEEEeecccceeeEEeecCceee------------------------------------------
Confidence 677899999999999999988776666444333
Q ss_pred CCCccccEEEEecCCccccceeeeccCCCceEEEECCCC---CEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCe
Q 040987 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSG---KYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKL 284 (762)
Q Consensus 209 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg---~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 284 (762)
+-++||-. -++|++ .+-.|++-|+.++.+. ..+.+|.+.|
T Consensus 148 -------------------------------shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-----H~LsGHr~~v 191 (397)
T KOG4283|consen 148 -------------------------------SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-----HTLSGHRDGV 191 (397)
T ss_pred -------------------------------hhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----eeeccccCce
Confidence 33444422 255655 5778999999999887 8899999999
Q ss_pred EEEEEcCCCcE-EEEeecCCeEEEEeccCC-ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 285 TVLAFHPTQRI-VAAGDVTGRILIWRGFGD-RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 285 ~~~~~sp~~~~-l~~~~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.++.|+|...+ |++|+.||.|++||++.. ..+...++... ......+.-..|.+.|..++|+
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~----------------k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT----------------KRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC----------------ccCccccccccccceeeeeeec
Confidence 99999998774 678999999999998654 22221111000 1112233456799999999999
Q ss_pred cCCCEEEEEecCCeEEEEecCCCceeccCC----CC---CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKKKFLPR----IG---SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~----~~---~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
.++.++++++.|..+++|+..+|+...... +. +.-..+. +.+...++.--.++.+.++.+-.+..++.+..|
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred ccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 999999999999999999999887521110 11 1111122 344445555556799999999999999999988
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
- ..+.+.++-|+-+...++..|+.+..|-.
T Consensus 335 ~----------k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 L----------KRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred c----------ceeeEEeecCchhhhhccccCCccccccc
Confidence 5 78899999999999999999999999976
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=197.84 Aligned_cols=268 Identities=16% Similarity=0.170 Sum_probs=208.4
Q ss_pred CEEEEEecC-CeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 366 AYLYSGGKE-GVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 366 ~~l~s~~~d-g~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
.+++++... ..+.+|.+....... ..-.++++.+++-+|+|.+++.|+..+.+++|.+.+|.++..+..|-
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY------- 123 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY------- 123 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc-------
Confidence 566666543 578999987665543 55677899999999999999999999999999999999999998887
Q ss_pred cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC--CCeEEEEeeecc
Q 040987 444 EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD--GSLMSTVDIKLA 521 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~~~~ 521 (762)
..|+++.|+-||.++++++.||.|.+|.+..--....- ..........+|.-+|+++...+. ..++++++
T Consensus 124 ---Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS---- 195 (476)
T KOG0646|consen 124 ---QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS---- 195 (476)
T ss_pred ---cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC-CCccceeeeccCcceeEEEEecCCCccceEEEec----
Confidence 78999999999999999999999999987431100000 000111122345888999988775 45888888
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc--c---cCC
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD--L---QSS 596 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~--~---~~~ 596 (762)
.|.++++||+..+..+..+.. +..+.+++.+|-++.++.|+.+|.|.+.++........ . ...
T Consensus 196 -----~D~t~k~wdlS~g~LLlti~f-------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 196 -----EDRTIKLWDLSLGVLLLTITF-------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred -----CCceEEEEEeccceeeEEEec-------CCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 899999999999987766543 66899999999999999999999999988765431111 0 001
Q ss_pred ceeeeeecccCCC--CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCC
Q 040987 597 GWSCHAVGSYKKK--AMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 597 ~~~~~~~~~~~~~--~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~d 660 (762)
.-.....+.+|.. .|+|++++-||.+|++|+ ||.|+|||+.+.++++++..-.++|+.+.+.|=
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 1112223445666 999999999999999999 999999999999999999877889999999664
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.2e-23 Score=184.14 Aligned_cols=286 Identities=14% Similarity=0.172 Sum_probs=217.8
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
..|+.|++.|.+||+|+.||.|.|||+.+.. ..+.+.+|..+|++++||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------------------------------iar~lsaH~~pi~sl~WS~ 75 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------------------------------IARMLSAHVRPITSLCWSR 75 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc------------------------------hhhhhhccccceeEEEecC
Confidence 7899999999999999999999999997653 3367889999999999999
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP 442 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (762)
||+.|++++.|..|.+||+..|.+......+.+|..+.|+|.... .++.-.+..-.+.++... .+.+-....+.
T Consensus 76 dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~--- 150 (405)
T KOG1273|consen 76 DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDG--- 150 (405)
T ss_pred CCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCcc---
Confidence 999999999999999999999999888899999999999996543 333334555556665542 12211111000
Q ss_pred CcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
..+....+..|.+.|+++++|...|.+.++|..+.+.+..+.... ...|..+.++..|++|+..+
T Consensus 151 -dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits---------~~~IK~I~~s~~g~~liiNt----- 215 (405)
T KOG1273|consen 151 -DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS---------VQAIKQIIVSRKGRFLIINT----- 215 (405)
T ss_pred -ccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech---------heeeeEEEEeccCcEEEEec-----
Confidence 000122334689999999999999999999999988887776542 25689999999999999998
Q ss_pred cCCCceeEEEEEEecCCCce---------eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEEccccccccc
Q 040987 523 EGIGSLVCLKFWVSGTQNKE---------FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKD 592 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~ 592 (762)
.|..|+.|+++.-... ..++.. -. ...-.+++||.+|.|++.++. ...++||.-..|.+++.
T Consensus 216 ----sDRvIR~ye~~di~~~~r~~e~e~~~K~qDv---VN-k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI 287 (405)
T KOG1273|consen 216 ----SDRVIRTYEISDIDDEGRDGEVEPEHKLQDV---VN-KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI 287 (405)
T ss_pred ----CCceEEEEehhhhcccCccCCcChhHHHHHH---Hh-hhhhhheeecCCccEEEeccccceeEEEEecCCcceeee
Confidence 8999999998732110 111100 01 223467899999999887764 45799999999998887
Q ss_pred ccCCceeeeeecccCC-CCeEEEEEcCCCcEEEEEcCCeEEEEeCCC
Q 040987 593 LQSSGWSCHAVGSYKK-KAMTAAAFSADGSVLAVAAETVITLWDPDR 638 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~la~~~d~~i~iwd~~~ 638 (762)
+. +.. .....+.|+|-...+++-..|.+++|....
T Consensus 288 Lh-----------G~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 288 LH-----------GTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred ec-----------CCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 73 223 566789999988888888789999998653
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=207.03 Aligned_cols=278 Identities=14% Similarity=0.205 Sum_probs=217.6
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc-e-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-K-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
..|....+.++|.|+|..|++++.||.|++|+..... . ..+..++..+.+++. ++.+|++++.++.|.+|...+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 4688889999999999999999999999999876652 2 223336666777664 45599999999999999998876
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.-..+.... -++..++|+.+|+++|.|+.|-.|++.++.+......+. +| ..+|.++.|+
T Consensus 88 ~~~iL~Rft----------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr----gh------~apVl~l~~~ 147 (933)
T KOG1274|consen 88 EDTILARFT----------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR----GH------DAPVLQLSYD 147 (933)
T ss_pred ccceeeeee----------ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec----cc------CCceeeeeEc
Confidence 544444333 467899999999999999999999999998876554443 33 7889999999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec--CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE--PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|.+++||+.+ .||.|++||++++.....+....-. ......+..++|+|+|..++....|+.|++|+..
T Consensus 148 p~~~fLAvss---------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 148 PKGNFLAVSS---------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred CCCCEEEEEe---------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 9999999999 8999999999988776655432100 0003356789999998888888889999999999
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEE
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l 664 (762)
+......+. ...+...+..++|||.|+|||+++ ||.|.|||+++-+. ......|.+++|-|++..|
T Consensus 219 ~we~~f~Lr---------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 219 GWELQFKLR---------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred Cceeheeec---------ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence 887766652 233445589999999999999999 99999999998332 2234569999999987766
Q ss_pred EEEEcCC
Q 040987 665 VATSWGS 671 (762)
Q Consensus 665 ~s~~~d~ 671 (762)
-....-|
T Consensus 286 t~~~~~g 292 (933)
T KOG1274|consen 286 TLITALG 292 (933)
T ss_pred EEEeecc
Confidence 5554444
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=182.05 Aligned_cols=292 Identities=13% Similarity=0.139 Sum_probs=216.3
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCce-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
..++.|++.|.+|++|+.+|.|.+||+.+... ..+..|-.+|.+++||+||+.|++++.|..|.+||+..|.+++.+.-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 67899999999999999999999999999876 45778889999999999999999999999999999999999888764
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
. ++|..+.|+|..+..++++ -+..-.+.++..+.... +... +..+......+..|.+.|+++
T Consensus 106 ~-----------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d-----~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 106 D-----------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKD-----DDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred c-----------CccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCC-----CccccccccccccccCCCCEE
Confidence 3 6889999999544333322 23334444544322111 1110 001112233445799999999
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc---
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ--- 590 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~--- 590 (762)
.+|. ..|.+.++|..+.+++..+... . ...|..+.++..|++|+.-+.|..||.|++..-...
T Consensus 169 itGt---------sKGkllv~~a~t~e~vas~rit----s-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 169 ITGT---------SKGKLLVYDAETLECVASFRIT----S-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred EEec---------CcceEEEEecchheeeeeeeec----h-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 9999 8899999999999887766532 1 257889999999999999999999999998631111
Q ss_pred -ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEE
Q 040987 591 -KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 591 -~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s 666 (762)
...+ ..+.+ .--....-.+++||.||.|++.++ ...++||.-..|.+++.|.|.. .....+.|.|-...+++
T Consensus 235 ~e~e~--~~K~q--DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 235 GEVEP--EHKLQ--DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIAS 310 (405)
T ss_pred CCcCh--hHHHH--HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeee
Confidence 0000 00000 000122335789999999999887 6889999999999999999887 44788999998888888
Q ss_pred EEcCCCCeEEEEECCCCce
Q 040987 667 TSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~~ 685 (762)
- ..|. |++|....-+.
T Consensus 311 i-~sg~--v~iw~~~~~en 326 (405)
T KOG1273|consen 311 I-ASGV--VYIWAVVQVEN 326 (405)
T ss_pred c-cCCc--eEEEEeecccc
Confidence 7 3444 99998765443
No 140
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-23 Score=181.15 Aligned_cols=256 Identities=13% Similarity=0.152 Sum_probs=203.2
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
..+...|.+.|..+...-.|++||+++.|++|+|+..+.+... .++..+.+|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s---------------------------~ll~~L~Gh~ 56 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS---------------------------KLLAELTGHS 56 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc---------------------------eeeeEecCCC
Confidence 3567789999999998889999999999999999998765432 3568999999
Q ss_pred cceeEEEEec--CCCEEEEEecCCeEEEEecCCCceec---cCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCc
Q 040987 354 SEVSVLIFSS--DGAYLYSGGKEGVLVVWQLDTGKKKF---LPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 354 ~~v~~~~~s~--~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~ 426 (762)
++|+.++|.. -|..|++++.||.|.+|.-++++... ...|...+++++|.|. |-.|++++.||.|.|++.++.
T Consensus 57 GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 57 GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 9999999965 78999999999999999999886533 4567789999999886 567899999999999998763
Q ss_pred ---eEEEEEccCCCCCCCCCcccCceeeEEEeCC---C-----------CEEEEeecCceEEEEEcCCCCceeeEEeecc
Q 040987 427 ---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHD---G-----------GLVALRAENYCIHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 427 ---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 489 (762)
...+....|. -.|.+++|.|. | +.|++|+.|+.|++|+..++.- .+...++
T Consensus 137 g~w~t~ki~~aH~----------~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w--~~e~~l~ 204 (299)
T KOG1332|consen 137 GGWTTSKIVFAHE----------IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW--KLERTLE 204 (299)
T ss_pred CCccchhhhhccc----------cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--hhhhhhh
Confidence 1222233444 67899999885 4 5699999999999999988732 2222234
Q ss_pred cccCCCCcceeEEEEEEecCC----CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC
Q 040987 490 NHQPGDDVTVVVTLVALSQDG----SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g----~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
+| .+.|+.++|.|.- .+||+++ .|+++.||..+......+.. ++..- ...+..+.||+
T Consensus 205 ~H------~dwVRDVAwaP~~gl~~s~iAS~S---------qDg~viIwt~~~e~e~wk~t--ll~~f-~~~~w~vSWS~ 266 (299)
T KOG1332|consen 205 GH------KDWVRDVAWAPSVGLPKSTIASCS---------QDGTVIIWTKDEEYEPWKKT--LLEEF-PDVVWRVSWSL 266 (299)
T ss_pred hc------chhhhhhhhccccCCCceeeEEec---------CCCcEEEEEecCccCccccc--ccccC-CcceEEEEEec
Confidence 44 8899999999964 5799998 89999999887433332221 12233 66899999999
Q ss_pred CCCeEEEEeCCCcEEEEEccc
Q 040987 566 NRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 566 d~~~l~~~~~dg~i~iwd~~~ 586 (762)
.|+.|+.++.|+.+.+|.-..
T Consensus 267 sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 267 SGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccEEEEecCCcEEEEEEeCC
Confidence 999999999999999997653
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=9.7e-23 Score=197.88 Aligned_cols=320 Identities=14% Similarity=0.220 Sum_probs=235.2
Q ss_pred EeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCc
Q 040987 107 ISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186 (762)
Q Consensus 107 ~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 186 (762)
-..+.||++.|.|+...|.| .+|++|+.||+|+||.+.+|.|++++...
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G-------~wlasGsdDGtvriWEi~TgRcvr~~~~d------------------------ 441 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSG-------EWLASGSDDGTVRIWEIATGRCVRTVQFD------------------------ 441 (733)
T ss_pred eeeEeccCCeEEEEEecCCc-------ceeeecCCCCcEEEEEeecceEEEEEeec------------------------
Confidence 34567999999999999999 79999999999999999999999887532
Q ss_pred eEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCC--EEEEEeCCeEEEEEcc
Q 040987 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGK--YFGIRKQRKLLIWKVP 264 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~--~la~~~~~~i~iwd~~ 264 (762)
+.|.|++|+|.+. .||++.+..+.|.+..
T Consensus 442 -------------------------------------------------~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 442 -------------------------------------------------SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred -------------------------------------------------ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3567788888775 4566665566666655
Q ss_pred CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe----ecCCeEEEEeccCCceeecccccccccccccccCCCCcccC
Q 040987 265 DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG----DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDN 340 (762)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (762)
-|... ..+ +....|+++ ..++.+..|.-.......
T Consensus 473 ~G~~~-------e~~-----------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~----------------------- 511 (733)
T KOG0650|consen 473 FGDRL-------EVG-----------PTKELLASAPNESEPDAAVVTWSRASLDELE----------------------- 511 (733)
T ss_pred ccchh-------hhc-----------chhhhhhcCCCccCCcccceeechhhhhhhc-----------------------
Confidence 44321 000 011112222 234567778754322221
Q ss_pred CccccceeeeccccceeEEEEecCCCEEEEEecC---CeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 341 DDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE---GVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 341 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
.-+...-.|...|..+.|+..|.+|++...+ ..|.+.++.....+ .+....+.+.++.|+|...+|+++ ...
T Consensus 512 ---~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~ 587 (733)
T KOG0650|consen 512 ---KGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQR 587 (733)
T ss_pred ---cceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-ecc
Confidence 0123445588899999999999999987654 56889998876654 344567789999999999999887 456
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.|+|||+....+++.+.... ..+..++++|.|..|+.++.|+.+..||+.-....... .+.|
T Consensus 588 ~vRiYdL~kqelvKkL~tg~----------kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~---lr~H----- 649 (733)
T KOG0650|consen 588 SVRIYDLSKQELVKKLLTGS----------KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT---LRLH----- 649 (733)
T ss_pred ceEEEehhHHHHHHHHhcCC----------eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH---hhhh-----
Confidence 89999999877766655443 68899999999999999999999999999765433221 1122
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec------CCCceeEEEEEeecCCCCC----ceEEEEEcCC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG------TQNKEFTLSTIVYEPHRDA----GISAVAFHPN 566 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~------~~~~~~~~~~~~~~~h~~~----~v~~~~~spd 566 (762)
...+++++|++.-.++++++ .|+++.||.-. ..-.+..++ .+.+| .. .|..+.|+|.
T Consensus 650 -~~avr~Va~H~ryPLfas~s---------dDgtv~Vfhg~VY~Dl~qnpliVPlK--~L~gH-~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 650 -EKAVRSVAFHKRYPLFASGS---------DDGTVIVFHGMVYNDLLQNPLIVPLK--RLRGH-EKTNDLGVLDTIWHPR 716 (733)
T ss_pred -hhhhhhhhhccccceeeeec---------CCCcEEEEeeeeehhhhcCCceEeee--eccCc-eeecccceEeecccCC
Confidence 67799999999999999999 88999887532 222233333 34677 43 3888899999
Q ss_pred CCeEEEEeCCCcEEEE
Q 040987 567 RRAAVSSSYGGDFKVW 582 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iw 582 (762)
...|++++.||+|++|
T Consensus 717 qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 717 QPWLFSAGADGTIRLF 732 (733)
T ss_pred CceEEecCCCceEEee
Confidence 9999999999999998
No 142
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=182.71 Aligned_cols=404 Identities=14% Similarity=0.129 Sum_probs=260.8
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEE
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKT 158 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~ 158 (762)
+.|||+|+|+|++.+-.+.|-|.+|-++++.+.- -..|.-+.|..|.. -.|...+.|+.|.+|++...+-...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~------~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC------HILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccce------eeeeeeeccceEEEEEeecceeEEE
Confidence 6799999999999999999999998876665543 46688899999984 3566778899999999987665444
Q ss_pred EEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCc
Q 040987 159 IDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEP 238 (762)
Q Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v 238 (762)
++. ....+
T Consensus 87 Ide------------------------------------------------------------------------g~agl 94 (447)
T KOG4497|consen 87 IDE------------------------------------------------------------------------GQAGL 94 (447)
T ss_pred ecc------------------------------------------------------------------------CCCcc
Confidence 431 24466
Q ss_pred eEEEECCCCCEEE-E-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCcee
Q 040987 239 QVITISSSGKYFG-I-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTF 316 (762)
Q Consensus 239 ~~~~~spdg~~la-~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~ 316 (762)
.+++|||||+.|. . .-+-.|.+|.+.+.+.. ....-...+..++|+|||++.+..++.......++..
T Consensus 95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~------~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~---- 164 (447)
T KOG4497|consen 95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKGY------LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS---- 164 (447)
T ss_pred eeeeECCCcceEeeeecceeEEEEEEeccceeE------EecccccCceeEEECCCCceeeeeecccHHHHHHHHh----
Confidence 7889999998876 3 35889999999988753 3333455678999999999998887642222222111
Q ss_pred ecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCC
Q 040987 317 ATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP 396 (762)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 396 (762)
..++..++.+.-.+-..+.+.|+|||+.|+.-.. --.-.+...+-+-.
T Consensus 165 -----------------------c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~---------~Leykv~aYe~~lG 212 (447)
T KOG4497|consen 165 -----------------------CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN---------VLEYKVYAYERGLG 212 (447)
T ss_pred -----------------------hHHHHHHHhcCCCcccccCceECCCCcEEEEecc---------hhhheeeeeeeccc
Confidence 1233444555556667788999999987765432 11111112223345
Q ss_pred eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEc
Q 040987 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSL 475 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~ 475 (762)
+..++|+|.+++|++|+.|+.+++.+--+.+.... ++-.+ -.|-++.+...
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e----------------------------flhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE----------------------------FLHLCSYHDPTLHLLEK 264 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhceeeeeehhh----------------------------hccchhccCchhhhhhh
Confidence 78899999999999999999888866544333322 22111 12222111111
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEeecCCC
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVYEPHR 554 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~h~ 554 (762)
++.+.+ .-...++.|.|..--.-.. . ..=.+|+... ......++.....+.+
T Consensus 265 e~~~~~----------------ql~~~cLsf~p~~~~a~~~----------~-~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 265 ETFSIV----------------QLLHHCLSFTPTDLEAHIW----------E-ESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred hhcchh----------------hhcccccccCCCccccCcc----------c-cchhhhhhhhcceeeecccCCCCCCCc
Confidence 111111 1112334444422100000 0 0001111110 1111112111122333
Q ss_pred CCceEEEEEcCCCCeEEEEeC--CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeE
Q 040987 555 DAGISAVAFHPNRRAAVSSSY--GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVI 631 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i 631 (762)
...+.-++|++|..++++-.+ .+.+.+||++..+....+. ...+|....|.|....|+... ...+
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi------------Qk~piraf~WdP~~prL~vctg~srL 385 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI------------QKHPIRAFEWDPGRPRLVVCTGKSRL 385 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh------------hccceeEEEeCCCCceEEEEcCCceE
Confidence 556788999999999998764 3679999999887766652 468999999999988888776 7789
Q ss_pred EEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC
Q 040987 632 TLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 632 ~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
++|.......+..-. ..-.|.++.|.-+|..++-.+.|.
T Consensus 386 Y~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 386 YFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCc
Confidence 999998766665443 346799999999999999999997
No 143
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.5e-22 Score=190.91 Aligned_cols=252 Identities=17% Similarity=0.227 Sum_probs=196.5
Q ss_pred ecCcccccCCceeecCCCEEEEE-e-CCEEEEEEcccce----------EEeeecCCccceeEEEEeCCCCcccceeeeE
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVC-T-SNTVSIFSTSTGL----------QISSLEGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~-~-~~~i~iwd~~~~~----------~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
.-|.+.|.. +..-|....|++. + .+.|.|||..+-. +-.+|.||.+.=.+++|++... .+|
T Consensus 121 i~h~gEVnR-aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~------g~L 193 (422)
T KOG0264|consen 121 INHDGEVNR-ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE------GTL 193 (422)
T ss_pred ccCCccchh-hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc------eeE
Confidence 568888987 8888877665554 4 5999999986432 2237889999888899999886 678
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++++.|++|++||+....... ++.
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~------~~~-------------------------------------------------- 217 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKED------KVV-------------------------------------------------- 217 (422)
T ss_pred eeccCCCcEEEEeccccccCC------ccc--------------------------------------------------
Confidence 899999999999997543210 000
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEE-E-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CC
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-G-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQ 293 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~ 293 (762)
..+....+|...|..++|++-...| + ++.|+.+.|||++++ .. .......+|.+.|+|++|+| ++
T Consensus 218 ---------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~--~~~~~~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 218 ---------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TS--KPSHSVKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred ---------cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CC--CCcccccccCCceeEEEeCCCCC
Confidence 0014567789999999999966544 4 668999999999964 21 44577789999999999999 66
Q ss_pred cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEe
Q 040987 294 RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGG 372 (762)
Q Consensus 294 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~ 372 (762)
..||+|+.|++|++||++... +++..+.+|...|..+.|+|.. ..|++++
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL~-----------------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNLN-----------------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred ceEEeccCCCcEEEeechhcc-----------------------------cCceeccCCCcceEEEEeCCCCCceeEecc
Confidence 688999999999999997653 3568899999999999999964 6788999
Q ss_pred cCCeEEEEecCCCcee---------------ccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcC
Q 040987 373 KEGVLVVWQLDTGKKK---------------FLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMP 424 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~---------------~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~ 424 (762)
.|+.+.+||+..-... .-.+|...|..+.|+|+..+ |++.+.|+.+.||++.
T Consensus 337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999998652211 12356678999999998876 5567789999999986
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.2e-22 Score=200.36 Aligned_cols=296 Identities=13% Similarity=0.184 Sum_probs=223.8
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeee--eccCcCeEEEEEcC-CCcEEEEeecCCeEEEEecc
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKIT--LHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~ 311 (762)
.....+|...++-..|+.+....+.++.+.............. ..-.-.+..+.|.. +.++||+++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 4566788888999999888888889998876554311111110 01112344567765 56799999999999999985
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCcee-c
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKK-F 389 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~-~ 389 (762)
... ..+.+..+..|...++++.|++. ..+|++|++||+|++||++..+-. .
T Consensus 119 k~~---------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 119 KSI---------------------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred ccc---------------------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 420 11345688999999999999874 578999999999999999987764 3
Q ss_pred cCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 390 LPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.......|..+.|+| .+..++++.+.|.+.+||++. .++...+..|. +.|.++.|+|++.+||+|++|
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~----------GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHN----------GPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhccc----------CceEEEeecCCCceeeecCCC
Confidence 445566899999998 467888888999999999986 44556677776 899999999999999999999
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
+.|+|||+.+.+.-....... ..++.++.|-|+.. .||+++.- .|..|+|||++..-.++..
T Consensus 242 K~vkiWd~t~~~~~~~~tInT---------iapv~rVkWRP~~~~hLAtcsmv-------~dtsV~VWDvrRPYIP~~t- 304 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINT---------IAPVGRVKWRPARSYHLATCSMV-------VDTSVHVWDVRRPYIPYAT- 304 (839)
T ss_pred ccEEEEeccCCCccceeEEee---------cceeeeeeeccCccchhhhhhcc-------ccceEEEEeecccccccee-
Confidence 999999998765433332221 56799999999876 56666643 7889999999876554433
Q ss_pred EEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEEEEEccccc
Q 040987 547 TIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+..| ...++.++|.. |...+.+++.||++..-.+++..
T Consensus 305 ---~~eH-~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 ---FLEH-TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ---eecc-CccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 4678 88999999976 45678889999987766555543
No 145
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=8.8e-22 Score=185.85 Aligned_cols=252 Identities=14% Similarity=0.189 Sum_probs=189.9
Q ss_pred cCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceE----------EEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 390 LPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEI----------IRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
...|.+.|..+.+-|... .+++.+..+.+.|||.....- -..+.+|. ..-.+++|++..
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~----------~eg~glsWn~~~ 189 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE----------KEGYGLSWNRQQ 189 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec----------cccccccccccc
Confidence 456778888888888664 555667788999999875221 12566666 345779999853
Q ss_pred -CEEEEeecCceEEEEEcCCCCce---eeEEeecccccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEE
Q 040987 459 -GLVALRAENYCIHFYSLLDDRGI---SEVQVCERNHQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 459 -~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
-.|++++.|+.|++||+...... ........+ |...|..++|++-. .++++++ .|+.+.|
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~------h~~~VeDV~~h~~h~~lF~sv~---------dd~~L~i 254 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG------HEDVVEDVAWHPLHEDLFGSVG---------DDGKLMI 254 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeec------CCcceehhhccccchhhheeec---------CCCeEEE
Confidence 47899999999999999865442 111222223 38889999999954 5666676 8999999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT 612 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 612 (762)
||++++.... .....+| .+.|.|++|+| ++..||+|+.|++|++||+++-.. +...+.+|...|.
T Consensus 255 wD~R~~~~~~---~~~~~ah-~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----------~lh~~e~H~dev~ 320 (422)
T KOG0264|consen 255 WDTRSNTSKP---SHSVKAH-SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----------PLHTFEGHEDEVF 320 (422)
T ss_pred EEcCCCCCCC---ccccccc-CCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----------CceeccCCCcceE
Confidence 9999631111 1123688 99999999999 567889999999999999987654 2234568999999
Q ss_pred EEEEcCCCc-EEEEEc-CCeEEEEeCCCC--------------eEEEEeccccCceeEEEEeCCCC-EEEEEEcCCCCeE
Q 040987 613 AAAFSADGS-VLAVAA-ETVITLWDPDRN--------------VLVAVIGETLTPIMNMSFVGSSE-YLVATSWGSKPQL 675 (762)
Q Consensus 613 ~~~~s~dg~-~la~~~-d~~i~iwd~~~~--------------~~~~~l~~~~~~v~~~~~s~dg~-~l~s~~~d~~~~v 675 (762)
.+.|||+.. .||+++ |+.+.|||+..- +++..-.||...|..+.|+|+.. .|+|++.|+. +
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~--L 398 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI--L 398 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce--E
Confidence 999999765 567666 999999998641 45667789999999999999655 5778899988 9
Q ss_pred EEEECCC
Q 040987 676 SVWNMSK 682 (762)
Q Consensus 676 ~vwd~~~ 682 (762)
.||++..
T Consensus 399 qIW~~s~ 405 (422)
T KOG0264|consen 399 QIWQMAE 405 (422)
T ss_pred EEeeccc
Confidence 9999863
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=6.7e-21 Score=176.92 Aligned_cols=335 Identities=16% Similarity=0.184 Sum_probs=226.9
Q ss_pred ccCcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 279 HHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
....+|.++.|.+++. .+|+|+.|..|++|.+..+..-... ..-+....+..|...|+
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------------~~V~y~s~Ls~H~~aVN 69 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------------MKVEYLSSLSRHTRAVN 69 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------------eeEEEeecccCCcceeE
Confidence 3456899999999776 9999999999999998655322100 11234567889999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecC--------C-----Cc-e---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEE
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLD--------T-----GK-K---KFLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~--------~-----~~-~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 420 (762)
.+.|+|+|..|++|+.+|.+.+|... + .+ . +.+..|...+..++|+||+.++++++.|+.+++
T Consensus 70 ~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 70 VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence 99999999999999999999999765 2 10 1 235668889999999999999999999999999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeec----cccc----
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCE----RNHQ---- 492 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~---- 492 (762)
||+..|.....+..|. ..+..++|.|-++++++-+.|...+.+.+...+.+....... ..+.
T Consensus 150 ~Dv~~G~l~~~~~dh~----------~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHE----------HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred EEeccceeEeeccccc----------cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 9999999999999887 789999999999999999999877777776655444333110 0000
Q ss_pred -----CCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 493 -----PGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 493 -----~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
..+........++|+|||.++++...-....+...-+..++|+....+.+... ...- ......+.|+|
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~----lp~~-~k~~lavr~~p-- 292 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR----LPSP-KKPALAVRFSP-- 292 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee----cCCC-CcceEEEEeee--
Confidence 00111334567899999999998762211111101122333332211111000 0011 11222222222
Q ss_pred CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec-
Q 040987 568 RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG- 646 (762)
Q Consensus 568 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~- 646 (762)
..|.+..-. .... +---|-+-.+|+++...|+|||.++-+++..+.
T Consensus 293 ------------Vy~elrp~~-------------------~~~~--~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n 339 (434)
T KOG1009|consen 293 ------------VYYELRPLS-------------------SEKF--LFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN 339 (434)
T ss_pred ------------eEEEecccc-------------------cccc--ccccccceEEEEeecceEEEeccccccceEEEee
Confidence 123332110 0000 111245556778888899999999988877664
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
-|-..|++++|++||..|+..|.||. ..+-.++..++-
T Consensus 340 ihy~~iTDiaws~dg~~l~vSS~DGy--CS~vtfe~~elg 377 (434)
T KOG1009|consen 340 IHYSAITDIAWSDDGSVLLVSSTDGF--CSLVTFEPWELG 377 (434)
T ss_pred eeeeeecceeecCCCcEEEEeccCCc--eEEEEEcchhcc
Confidence 38889999999999999999999997 555555555443
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.5e-22 Score=201.10 Aligned_cols=283 Identities=11% Similarity=0.176 Sum_probs=215.2
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----ccCC---CCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCC
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-----FLPR---IGSPLLYFTESP-DPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-----~~~~---~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~ 425 (762)
....+...++-..++.++. ..+.+|.+...... .... ....+..+.|.. +.++|++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 4566777788888888876 46777766543321 1111 112344566753 568899999999999999987
Q ss_pred ---ceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 426 ---MEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 426 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+.+..|..|. ..+.++.|++ ...+|++|+.||+|++||++..+...++... ...|
T Consensus 120 ~~rnk~l~~f~EH~----------Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n----------SESi 179 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHE----------RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN----------SESI 179 (839)
T ss_pred cccchhhhHhhhhc----------cceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc----------chhh
Confidence 45556677776 7889999998 4568899999999999999987665554332 6679
Q ss_pred EEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 502 TLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 502 ~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
+++.|+| .+..++++. +.|.+.+||++........ +.+| .+.|.++.|+|++.+||+|+.|+.|+
T Consensus 180 RDV~fsp~~~~~F~s~~---------dsG~lqlWDlRqp~r~~~k----~~AH-~GpV~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIH---------DSGYLQLWDLRQPDRCEKK----LTAH-NGPVLCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred hceeeccCCCceEEEec---------CCceEEEeeccCchhHHHH----hhcc-cCceEEEeecCCCceeeecCCCccEE
Confidence 9999999 467788887 8899999999976543322 3689 99999999999999999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcE-EEEEc---CCeEEEEeCCCC-eEEEEeccccCceeEE
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSV-LAVAA---ETVITLWDPDRN-VLVAVIGETLTPIMNM 655 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~-la~~~---d~~i~iwd~~~~-~~~~~l~~~~~~v~~~ 655 (762)
|||..+.+..... +. ....++.++.|-|+..+ ||+++ |-.|+|||+... -+-.++..|...++.+
T Consensus 246 iWd~t~~~~~~~~------tI----nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 246 IWDMTDSRAKPKH------TI----NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred EEeccCCCcccee------EE----eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 9999876544332 11 13578899999998775 66664 899999999865 3456778899999999
Q ss_pred EEeC-CCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 656 SFVG-SSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 656 ~~s~-dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+|-. |-..|.+++.|+. |..-.++++.
T Consensus 316 ~W~~~d~~~l~s~sKD~t--v~qh~~knat 343 (839)
T KOG0269|consen 316 AWDSGDRINLWSCSKDGT--VLQHLFKNAT 343 (839)
T ss_pred eccCCCceeeEeecCccH--HHHhhhhccc
Confidence 9976 6678999999997 6655555544
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=2.1e-20 Score=183.85 Aligned_cols=276 Identities=14% Similarity=0.147 Sum_probs=215.0
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCcee
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTF 316 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~ 316 (762)
.|..++|-|||..|+.+.+..+.+||...|... +.+.+|.+.|.|++|+.||+.+|+|+.|..|.+|+-.-...
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll-----qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL-----QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc-----cccccccceEEEEEEccCCceeccCCCceeEEEecccccce-
Confidence 788999999999999888999999999999877 78899999999999999999999999999999998532211
Q ss_pred ecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCC
Q 040987 317 ATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP 396 (762)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 396 (762)
.-..|.+.|.|+.|+|-...|++++- ...-+|..+.... ........
T Consensus 88 -------------------------------LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~kss~R 134 (1081)
T KOG1538|consen 88 -------------------------------LKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHKSSSR 134 (1081)
T ss_pred -------------------------------eeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhhhhee
Confidence 11359999999999999999999876 4577887664332 23334567
Q ss_pred eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-----CEEEEeecCceEE
Q 040987 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-----GLVALRAENYCIH 471 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~ 471 (762)
+.+++|..||++++.|-.+|+|.+-+-. ++..-.+.....+ +..|.+++|+|.. ..+++.....++.
T Consensus 135 ~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~-------Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 135 IICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGS-------NSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred EEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCC-------CCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 8999999999999999999999998654 4443333332221 2789999999953 3677888888888
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
+|.+.. +.+.. .+.. .....|+.+-++|.++..|+ .|+.+.+|-.+.- ...++.
T Consensus 207 Fy~LsG-~~Igk----~r~L------~FdP~CisYf~NGEy~LiGG---------sdk~L~~fTR~Gv-rLGTvg----- 260 (1081)
T KOG1538|consen 207 FYQLSG-KQIGK----DRAL------NFDPCCISYFTNGEYILLGG---------SDKQLSLFTRDGV-RLGTVG----- 260 (1081)
T ss_pred EEEecc-eeecc----cccC------CCCchhheeccCCcEEEEcc---------CCCceEEEeecCe-EEeecc-----
Confidence 888753 22221 1111 44578999999999999998 8899999976543 222221
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.....|..++..|++++++.|+.||+|.-|++..
T Consensus 261 -~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 261 -EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -ccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 1156999999999999999999999999998754
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=4.6e-21 Score=180.64 Aligned_cols=301 Identities=16% Similarity=0.141 Sum_probs=219.5
Q ss_pred eeeeccCcCeEEEEEcCCC--cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 275 KITLHHTKKLTVLAFHPTQ--RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~--~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
.....+..+|++++|+|.. +.+|+|+.-|.|-+||+.+.+.- ..-+..+..|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d--------------------------~d~v~~f~~h 233 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD--------------------------KDGVYLFTPH 233 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc--------------------------cCceEEeccC
Confidence 4455678899999999954 58889999999999999643221 1335678889
Q ss_pred ccceeEEEEecC-CCEEEEEecCCeEEEEecCCCceeccCC---CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 353 PSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKKFLPR---IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 353 ~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
..+|.++.|+|. -..+++.+.||+|++-|++++....+.. ....+..+.|+.+...++++..-|...+||++++..
T Consensus 234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s 313 (498)
T KOG4328|consen 234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS 313 (498)
T ss_pred CccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence 999999999994 4689999999999999999877643333 234567788888888888888888999999998543
Q ss_pred -EEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 429 -IRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
...+.-|. ..|.+++++|- ..+|++++.|++.+|||++.-..-.......- .|...|.+..|
T Consensus 314 ~~~~~~lh~----------kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~------~HrrsV~sAyF 377 (498)
T KOG4328|consen 314 EYENLRLHK----------KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL------PHRRSVNSAYF 377 (498)
T ss_pred cchhhhhhh----------cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc------cccceeeeeEE
Confidence 55555555 68899999995 45789999999999999986544332111111 23778999999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEec----CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG----TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
||++-.|++.+ .|..|+|||.. .......+......+. --.....+|.|+..++++|..-..|-|+
T Consensus 378 SPs~gtl~TT~---------~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R-wlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 378 SPSGGTLLTTC---------QDNEIRVFDSSCISAKDEPLGTIPHNNRTGR-WLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred cCCCCceEeec---------cCCceEEeecccccccCCccceeeccCcccc-cccchhheeCCCccEEEEeccCcceeEE
Confidence 99988899998 89999999984 2222222221101110 0123456899999999999999999999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeE-EEEEcCCCcEEEEEc--CCeEEEEeCC
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMT-AAAFSADGSVLAVAA--ETVITLWDPD 637 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~dg~~la~~~--d~~i~iwd~~ 637 (762)
|-..++.+..+. ......|. -..|+|-+..+++|+ .|.|+||--+
T Consensus 448 ~~~~~q~v~el~----------~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 448 DGNGGQMVCELH----------DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cCCCCEEeeecc----------CccccccccceeecccccceeccCCccceEEEEecC
Confidence 998888655541 01112333 357999888666665 7889988654
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=6e-21 Score=171.71 Aligned_cols=282 Identities=14% Similarity=0.168 Sum_probs=207.0
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCc-------ee-------ccCCCCCCeEEEEeC-------CCCCeEEEEec
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-------KK-------FLPRIGSPLLYFTES-------PDPSLSSISCA 414 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-------~~-------~~~~~~~~v~~~~~s-------~~~~~l~~~~~ 414 (762)
...+.|+|||..|++-+.|..+.+|++...- .. .....+..|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4568899999999999999999999874311 11 112234456666663 67889999999
Q ss_pred CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc-CCCCceeeEEeecccccC
Q 040987 415 DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL-LDDRGISEVQVCERNHQP 493 (762)
Q Consensus 415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~ 493 (762)
+.-|++||.-+|+....+......... ....+++|+|||..|++| ...+|++||+ +.+..-.......++.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~-----taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k-- 203 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEY-----TAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGK-- 203 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhh-----hhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccc--
Confidence 999999999999988877653311100 244689999999999876 5567999999 4554332222222211
Q ss_pred CCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE
Q 040987 494 GDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 494 ~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
.+..+.+.+++|+|.. +.+|.++ ....+-||.-........+ .+| .+.|+.+.|.+||+.|++
T Consensus 204 -~gq~giisc~a~sP~~~~~~a~gs---------Y~q~~giy~~~~~~pl~ll-----ggh-~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 204 -FGQKGIISCFAFSPMDSKTLAVGS---------YGQRVGIYNDDGRRPLQLL-----GGH-GGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred -ccccceeeeeeccCCCCcceeeec---------ccceeeeEecCCCCceeee-----ccc-CCCeeeEEeccCcCeecc
Confidence 1226778999999955 5888888 6678888888877776655 588 999999999999999999
Q ss_pred EeC-CCcEEEEEcccccccccccCCceeeeeecccCCC-CeEE--EEEcCCCcEEEEEc-CCeEEEEeCCC-CeEEEEec
Q 040987 573 SSY-GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK-AMTA--AAFSADGSVLAVAA-ETVITLWDPDR-NVLVAVIG 646 (762)
Q Consensus 573 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~--~~~s~dg~~la~~~-d~~i~iwd~~~-~~~~~~l~ 646 (762)
|+. |-.|..||++........ +..|.. .-.. +...|+|++||+|+ ||.|++||+++ |..+..+.
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~----------L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYA----------LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred cccCCCeEEEEeehhccchhhh----------hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 875 567999999865433221 112222 1123 44568999999998 99999999998 77777888
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
.|...++.++++|-=.++++++...
T Consensus 338 ~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 338 NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred cccccccceecCcccceeeeccCce
Confidence 8899999999999888888887644
No 151
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.8e-23 Score=205.22 Aligned_cols=248 Identities=17% Similarity=0.252 Sum_probs=209.6
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEE
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTV 286 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 286 (762)
+.+...-.+++|+.+ ....|...+.++..-..++.++.| .+..+-+|.+...... ..+.+|..+|.+
T Consensus 8 m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-----~S~~~hespIeS 75 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-----TSLTGHESPIES 75 (825)
T ss_pred ceeeeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-----heeeccCCccee
Confidence 334455567778764 344568888888887778888854 6777889998876654 457899999999
Q ss_pred EEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC
Q 040987 287 LAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366 (762)
Q Consensus 287 ~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 366 (762)
+.|+++..+|++|+.+|+|++||++..+ .++.+.+|...+..+.|+|-+.
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk------------------------------~vrtLtgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAK------------------------------IVRTLTGHLLNITSVDFHPYGE 125 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhh------------------------------hhhhhhccccCcceeeeccceE
Confidence 9999999999999999999999997663 4578999999999999999999
Q ss_pred EEEEEecCCeEEEEecCCCce-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 367 YLYSGGKEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
+.++++.|+.+.+||.+...+ .....|...+..+.|+|+|++++.++.|..++|||+..|+....|..|.
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e--------- 196 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE--------- 196 (825)
T ss_pred EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc---------
Confidence 999999999999999995555 4556677889999999999999999999999999999999999999988
Q ss_pred cCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 446 KGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
+.+..+.|+|..-+++.|+.|+++++||+++-..+...... ...|.+.+|+|+++.+++|.
T Consensus 197 -~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~----------~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 197 -GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE----------TDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred -ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc----------cCCceeeeecCCceeeecCc
Confidence 78899999999999999999999999999876544433221 56799999999999999986
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.2e-20 Score=167.10 Aligned_cols=260 Identities=11% Similarity=0.149 Sum_probs=188.2
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCC--CCCeEEEEecCCcEEEEE
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESP--DPSLSSISCADNQVHLLK 422 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~d 422 (762)
.+|.+-|+++.|.+-|+++++++.|+++++||.+...- -....|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46889999999999999999999999999999754432 23567889999999954 589999999999999997
Q ss_pred cCC---------ceEEEEEccCCCCCCCCCcccCceeeEEEeCC--CCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 423 MPS---------MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD--GGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 423 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
-.. .....++.... +.|.++.|.|. |-.||+++.||.++||+......+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~Dsr----------ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-------- 151 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSR----------SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-------- 151 (361)
T ss_pred ecccccccccceeEEEEEeecCC----------cceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc--------
Confidence 631 11222333333 67888888883 56788888888888888754322222
Q ss_pred cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC---CC
Q 040987 492 QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN---RR 568 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd---~~ 568 (762)
|.+...-...... ...+ .....|+.|+|. ..
T Consensus 152 ------------------------------------------W~Lq~Ei~~~~~p---p~~~-~~~~~CvsWn~sr~~~p 185 (361)
T KOG2445|consen 152 ------------------------------------------WTLQHEIQNVIDP---PGKN-KQPCFCVSWNPSRMHEP 185 (361)
T ss_pred ------------------------------------------chhhhhhhhccCC---cccc-cCcceEEeeccccccCc
Confidence 2211110000000 0112 446678888874 45
Q ss_pred eEEEEeCC-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCC----CcEEEEEc-CCeEEEEeCCC
Q 040987 569 AAVSSSYG-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSAD----GSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 569 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----g~~la~~~-d~~i~iwd~~~ 638 (762)
+||.|+.+ +.++||....... .|.....+.+|..+|++++|.|+ -.+||+++ || |+||.+..
T Consensus 186 ~iAvgs~e~a~~~~~~~Iye~~e~~r-------Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 186 LIAVGSDEDAPHLNKVKIYEYNENGR-------KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred eEEEEcccCCccccceEEEEecCCcc-------eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 78888765 4789998765542 33344456689999999999995 34789998 99 99999873
Q ss_pred C--------------------eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 639 N--------------------VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 639 ~--------------------~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
. +.+..+.+|++.|+.+.|.-.|..|++.|.||. |++|...-.
T Consensus 258 ~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~--VRLWkany~ 320 (361)
T KOG2445|consen 258 ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC--VRLWKANYN 320 (361)
T ss_pred ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce--eeehhhhhh
Confidence 1 456668899999999999999999999999998 999986543
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.5e-21 Score=189.73 Aligned_cols=310 Identities=15% Similarity=0.196 Sum_probs=210.0
Q ss_pred ceeEEEEecCCCeEEEEecCCcc-------eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEee--ec
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVN-------SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS--LE 111 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~-------~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~--l~ 111 (762)
..-+||++.++|.|.++|....+ .+....|.+.|.. ++|-|-...|++++ |.+++.||+++++++.. +.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifD-l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFD-LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEe-eccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 46799999999999999977422 2455889999997 99999556777777 79999999999999877 89
Q ss_pred CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEE
Q 040987 112 GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYL 191 (762)
Q Consensus 112 ~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (762)
||.+.|.+++|.|..+ ..+++|+.||.|.|||++....-..-+..
T Consensus 142 GH~~SvkS~cf~~~n~------~vF~tGgRDg~illWD~R~n~~d~~e~~~----------------------------- 186 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNP------AVFCTGGRDGEILLWDCRCNGVDALEEFD----------------------------- 186 (720)
T ss_pred ccccccchhhhccCCC------cceeeccCCCcEEEEEEeccchhhHHHHh-----------------------------
Confidence 9999999999999997 78999999999999998743311100000
Q ss_pred EeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhh
Q 040987 192 SVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERV 271 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~ 271 (762)
.+++. .|.+... |.. - ....++-|.......
T Consensus 187 ------------------------~~~~~------------~~n~~pt-----psk-p----~~kr~~k~kA~s~ti--- 217 (720)
T KOG0321|consen 187 ------------------------NRIYG------------RHNTAPT-----PSK-P----LKKRIRKWKAASNTI--- 217 (720)
T ss_pred ------------------------hhhhc------------cccCCCC-----CCc-h----hhccccccccccCce---
Confidence 00000 0111000 000 0 001112222221111
Q ss_pred eeeeeeeccCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 272 VMRKITLHHTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
...|+. .+..|...||+++. |+.|+|||+.........+ ......+.
T Consensus 218 ---------~ssvTv-v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e----------------------p~~~~~~~ 265 (720)
T KOG0321|consen 218 ---------FSSVTV-VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE----------------------PRGSDKYP 265 (720)
T ss_pred ---------eeeeEE-EEEeccceeeeccCCCcceEEEeecccccccccC----------------------CCcccCcc
Confidence 112444 44557778998877 9999999998765432110 01112222
Q ss_pred cc---ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCC-----eEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 351 WH---PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP-----LLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 351 ~h---~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
.| ...+.++.....|.+|+..+.|+.|++|++.+........+.+. -..-..+||+.++++++.|...++|.
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 33 34567777777888988888899999999987655332222221 12234689999999999999999999
Q ss_pred cCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCC
Q 040987 423 MPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 423 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~ 478 (762)
+.+.+ ....+.+|. ..|.+++|.|. -.-++++++|..+++|++..+
T Consensus 346 vs~~e~~~~~l~Ght----------~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 346 VSSPEAPPALLLGHT----------REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ecCccCChhhhhCcc----------eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 98743 344566666 68899999883 234777799999999999665
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1e-20 Score=170.78 Aligned_cols=313 Identities=12% Similarity=0.119 Sum_probs=222.8
Q ss_pred eeeeccCCCceEEEECC-----CCCEEEEEeCCeEEEEEccCchhhhheeeeee-eccCcCeEEEEEcCC----CcEEEE
Q 040987 229 GVTLAEMKEPQVITISS-----SGKYFGIRKQRKLLIWKVPDVEAERVVMRKIT-LHHTKKLTVLAFHPT----QRIVAA 298 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~sp-----dg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~----~~~l~~ 298 (762)
.....|..++..++|.+ +-+.+|+.....+.+|+........ .+.... ..|......++|+-| ..+||+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir-~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIR-LLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcccee-eeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45566788999999984 2345667788899999887655220 111222 247778888898764 348999
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeE
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVL 377 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i 377 (762)
|+.-|.|+|.|+..+ ++...+.+|...|+.+.|.|+. +++++++.|..|
T Consensus 111 ~G~~GvIrVid~~~~------------------------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSG------------------------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred ecceeEEEEEecchh------------------------------hhccceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 999999999998766 3457889999999999999975 789999999999
Q ss_pred EEEecCCCceec----cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE------------------ccC
Q 040987 378 VVWQLDTGKKKF----LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI------------------SGI 435 (762)
Q Consensus 378 ~~wd~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------~~~ 435 (762)
++|++++..++. ..+|...|.++.|+++|.+|++++.|.++++|++...+....+ ..|
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 999999999864 4668889999999999999999999999999999843211111 111
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC-CCCceeeEEeec-----ccccCCCCcceeEEEEEEecC
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL-DDRGISEVQVCE-----RNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~sp~ 509 (762)
-...+..+.|...|.++.|- |.++++-+-++.|..|... -.+.+....... -..-............+|.|-
T Consensus 241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 11112445667777777776 4688888889999999872 111111110000 000000111233445566778
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
++.||.+. ..|.|.+||++...... ..++.-.-. ...|...+||.||..|+...+|++|.-||.-
T Consensus 319 ~~~la~gn---------q~g~v~vwdL~~~ep~~-~ttl~~s~~-~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 319 QKMLALGN---------QSGKVYVWDLDNNEPPK-CTTLTHSKS-GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHhhcc---------CCCcEEEEECCCCCCcc-CceEEeccc-cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 89999998 88999999999877642 112111122 5679999999999999999999999999863
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=6.3e-21 Score=181.09 Aligned_cols=266 Identities=14% Similarity=0.153 Sum_probs=208.0
Q ss_pred ceeEEEEecCCCEEEE--EecCCeEEEEecCCC--ceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 355 EVSVLIFSSDGAYLYS--GGKEGVLVVWQLDTG--KKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s--~~~dg~i~~wd~~~~--~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
.+.++.|..... |++ .+.|..+++|.-... +... .......-.|++......++++++..+.|+|||++...+.
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 488899987653 444 446778899975543 1111 1112224445555555588999999999999999987778
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+.+++|+ ..|.++.++-...+||+++..|.|.+..+.++....++.... ...+.-+.|+|.
T Consensus 115 r~lkdh~----------stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s---------gqsvRll~ys~s 175 (673)
T KOG4378|consen 115 RFLKDHQ----------STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS---------GQSVRLLRYSPS 175 (673)
T ss_pred hhccCCc----------ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC---------CCeEEEeecccc
Confidence 8888887 789999999999999999999999999999887766665432 345778999998
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
.++++.... .+|.|.+||+.......... ..| ..+...++|+|. ..+|++.+.|..|.+||+....
T Consensus 176 kr~lL~~as--------d~G~VtlwDv~g~sp~~~~~----~~H-sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 176 KRFLLSIAS--------DKGAVTLWDVQGMSPIFHAS----EAH-SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred cceeeEeec--------cCCeEEEEeccCCCcccchh----hhc-cCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 876554432 88999999999888776653 578 889999999995 5678899999999999998776
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC-eEEEEeccccCceeEEEEeCCCCEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s 666 (762)
....+ ....+.+.++|+++|.+|+.|+ .|.|..||+... .++.++..|...|++++|-+.. .+++
T Consensus 243 s~~~l------------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 243 STDRL------------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP-TVLT 309 (673)
T ss_pred cccee------------eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc-eeee
Confidence 65544 2467889999999999999998 999999999865 6788888999999999998864 4443
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.5e-20 Score=177.12 Aligned_cols=301 Identities=16% Similarity=0.172 Sum_probs=218.3
Q ss_pred cceeeeccccceeEEEEecCC--CEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCCCC-CeEEEEecCC
Q 040987 345 LCTTWHWHPSEVSVLIFSSDG--AYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESPDP-SLSSISCADN 416 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~ 416 (762)
...+.+-+.++|++++|+|.. +.+++|+..|+|-+||+.+.+. .....|..+|.++.|+|.. ..+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 345667789999999999965 5788888889999999964433 3467788899999999954 6788899999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
+|+.-|++.+.....+.... ....+.++.|+.+...++++..=|.+.+||++++........ -|
T Consensus 258 tiR~~D~~~~i~e~v~s~~~--------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~---lh----- 321 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDT--------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR---LH----- 321 (498)
T ss_pred eeeeeeecchhhHHHhhcCc--------cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh---hh-----
Confidence 99999998753322222211 114677888998888888888878999999988765322111 11
Q ss_pred cceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 497 VTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 497 ~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
...|+.++++|-. .+||+++ .|++.+|||++.-..... +.+...+| ...|.+..|||++..|++.+.
T Consensus 322 -~kKI~sv~~NP~~p~~laT~s---------~D~T~kIWD~R~l~~K~s-p~lst~~H-rrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 322 -KKKITSVALNPVCPWFLATAS---------LDQTAKIWDLRQLRGKAS-PFLSTLPH-RRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred -hcccceeecCCCCchheeecc---------cCcceeeeehhhhcCCCC-cceecccc-cceeeeeEEcCCCCceEeecc
Confidence 4579999999965 4678887 899999999986554443 11223578 889999999999888999999
Q ss_pred CCcEEEEEcc----cccccccccCCceeeeeecccCCCCe--EEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc
Q 040987 576 GGDFKVWICN----DELQQKDLQSSGWSCHAVGSYKKKAM--TAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET 648 (762)
Q Consensus 576 dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~ 648 (762)
|..|+|||.. .-.....+ .|.. .+..++ -..+|.||..++++|. -..|-|+|-..++.+..+...
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I------~Hn~--~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTI------PHNN--RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred CCceEEeecccccccCCcccee------eccC--cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 9999999984 11222121 1111 112233 3568999999999998 788999999999988887544
Q ss_pred cC-ceeE-EEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 649 LT-PIMN-MSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 649 ~~-~v~~-~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.. .|.+ ..|+|-+..+++|+..+ |.|+||.-+.
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~-Gki~vft~k~ 496 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSS-GKIYVFTNKK 496 (498)
T ss_pred cccccccceeecccccceeccCCcc-ceEEEEecCC
Confidence 43 3544 47999877677766544 3488886443
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=6.2e-18 Score=181.01 Aligned_cols=369 Identities=24% Similarity=0.415 Sum_probs=279.5
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccce-EEeeecCCcc-ceeEEEE-eCCCCcccceeeeEEeeec
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-QISSLEGHKA-PVTTVIV-VPASTPATKILSYCWTASL 141 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-~~~~l~~h~~-~V~~v~~-s~~~~~~~~l~~~l~s~s~ 141 (762)
....+|...+.. +.|.+++..++.++ ++.+.+|+...+. .+..+.++.. .+..+.+ ++++. .+++..+.
T Consensus 59 ~~~~~~~~~i~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 131 (466)
T COG2319 59 LLLRGHEDSITS-IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN------SILLASSS 131 (466)
T ss_pred heeeeccceEEE-EEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc------eEEeccCC
Confidence 456789999997 99999999999998 8999999998887 7777777543 7888888 77772 24444444
Q ss_pred -CCeEEEEeCCC-cceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 142 -DGTIKYWDFSV-PELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 142 -d~~i~vWd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
|+.+.+||... .....
T Consensus 132 ~d~~~~~~~~~~~~~~~~-------------------------------------------------------------- 149 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIR-------------------------------------------------------------- 149 (466)
T ss_pred CCccEEEEEecCCCeEEE--------------------------------------------------------------
Confidence 89999999876 33332
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEEEEe--CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc-EE
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR-IV 296 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l 296 (762)
....|...+..++|+|++++++.+. ++.+.+|+...+... ....+|...|.+++|+|++. .+
T Consensus 150 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 150 ----------TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL-----STLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred ----------EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceE-----EeeccCCCceEEEEEcCCcceEE
Confidence 3334566777899999999887553 999999999985543 56667999999999999998 55
Q ss_pred EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccce-eeeccccceeEEEEecCCCEEEEEecCC
Q 040987 297 AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT-TWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
++++.|+.|++||...+.. .. .+.+|.... ...|++++..+++++.|+
T Consensus 215 ~~~~~d~~i~~wd~~~~~~------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 263 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKL------------------------------LRSTLSGHSDSV-VSSFSPDGSLLASGSSDG 263 (466)
T ss_pred EEecCCCcEEEEECCCCcE------------------------------EeeecCCCCcce-eEeECCCCCEEEEecCCC
Confidence 5558999999998763322 23 567777765 448999998999999999
Q ss_pred eEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc--cCCCCCCCCCcccCceee
Q 040987 376 VLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS--GIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 376 ~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~ 451 (762)
.+++|+...... .....+...+.++.|+|++..+++++.++.+.+|+..+........ .+. ..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 333 (466)
T COG2319 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------GPVSS 333 (466)
T ss_pred cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccC----------CceEE
Confidence 999999987664 2234667899999999988888888888889999998877666665 443 46788
Q ss_pred EEEeCCCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE-EeeeccccCCCcee
Q 040987 452 IAFNHDGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST-VDIKLAEEGIGSLV 529 (762)
Q Consensus 452 ~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~~~~~~~~~~~~d~ 529 (762)
+.+.+++..++.+ ..|+.+.+|+........... . ...+..+.+++ ...+.. +. .++
T Consensus 334 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~-~~~~~~~~~---------~~~ 392 (466)
T COG2319 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE---G--------HSNVLSVSFSP-DGRVVSSGS---------TDG 392 (466)
T ss_pred EEECCCCCEEEEeecCCCcEEeeecCCCceeEEec---C--------CceEEEEEECC-CCCEEEEec---------CCC
Confidence 8884333556655 677889999998776111111 1 22278888888 533333 34 778
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.+.+|+............ + ...+....+++++..++.++.++.+++|+...
T Consensus 393 ~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDG-----H-TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ceEEEecccCeeeeeccC-----C-CCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 999999998876655421 1 16889999999999999999999999999986
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.2e-20 Score=163.16 Aligned_cols=266 Identities=13% Similarity=0.180 Sum_probs=193.9
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
.+..+|.+-|+++.|.+.|+++|+|+.|++|+|||..... .++.+...++.|.+
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s--------------------------~~W~~Ts~Wrah~~ 60 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS--------------------------GTWSCTSSWRAHDG 60 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC--------------------------CceEEeeeEEecCC
Confidence 5667899999999999999999999999999999964432 34456688999999
Q ss_pred ceeEEEEec--CCCEEEEEecCCeEEEEecCCCc-------e---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEE
Q 040987 355 EVSVLIFSS--DGAYLYSGGKEGVLVVWQLDTGK-------K---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHL 420 (762)
Q Consensus 355 ~v~~~~~s~--~g~~l~s~~~dg~i~~wd~~~~~-------~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i 420 (762)
.|..+.|.+ -|+.+++++.|+++.+|.-.... . ..+......|+.+.|.|. |-.+++++.||.++|
T Consensus 61 Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 61 SIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred cEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 999999965 48999999999999999752111 1 234455678999999985 677899999999999
Q ss_pred EEcCCceEE------EEEccCCCCCCCCCcccCceeeEEEeCC---CCEEEEeecC-----ceEEEEEcCCCCceeeEEe
Q 040987 421 LKMPSMEII------RSISGIKLPCPLPEEYKGLCRDIAFNHD---GGLVALRAEN-----YCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 421 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~ 486 (762)
|+...--.+ ..++... ..+..+.....++.|+|. ..+||+|+.+ +.++||....+........
T Consensus 141 YEA~dp~nLs~W~Lq~Ei~~~~---~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 141 YEAPDPMNLSQWTLQHEIQNVI---DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred EecCCccccccchhhhhhhhcc---CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence 987653222 2222111 112223356678889873 4578888766 5788888765542211111
Q ss_pred ecccccCCCCcceeEEEEEEecC----CCeEEEEeeeccccCCCceeEEEEEEecCCC------------ceeEE--EE-
Q 040987 487 CERNHQPGDDVTVVVTLVALSQD----GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN------------KEFTL--ST- 547 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~----g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~------------~~~~~--~~- 547 (762)
...+ +..+|++++|.|+ -..||+++ .|| |+||.+.... ....+ ..
T Consensus 218 ~L~d------~~dpI~di~wAPn~Gr~y~~lAvA~---------kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~v 281 (361)
T KOG2445|consen 218 ELPD------HTDPIRDISWAPNIGRSYHLLAVAT---------KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKV 281 (361)
T ss_pred hcCC------CCCcceeeeeccccCCceeeEEEee---------cCc-EEEEEEeeccchhhhhcccCCCCccccceEEe
Confidence 1112 3889999999996 35788888 788 9999998421 11111 11
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
..+..| .+.|..+.|+-.|..|++.+.||.||+|...-
T Consensus 282 s~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 282 SELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 135688 99999999999999999999999999997653
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=2.1e-20 Score=183.41 Aligned_cols=297 Identities=12% Similarity=0.119 Sum_probs=212.8
Q ss_pred EEEec---CCCEEEEEecCCeEEEEecCCCce-------eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 359 LIFSS---DGAYLYSGGKEGVLVVWQLDTGKK-------KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 359 ~~~s~---~g~~l~s~~~dg~i~~wd~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
..|++ ....|+.+.+||.|.++|...... .....|...|..+.|.|....|++++.|.+++.||+++.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45654 345788899999999999775433 34566888999999999777889999999999999999888
Q ss_pred EEE--EccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCc--eeeEEe-----e----------c
Q 040987 429 IRS--ISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRG--ISEVQV-----C----------E 488 (762)
Q Consensus 429 ~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~--~~~~~~-----~----------~ 488 (762)
... +.+|. +.+.+++|.|+. ..+++|+.||.|.|||++-... ..++.. . .
T Consensus 135 ~G~~~~~GH~----------~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 135 VGGRLNLGHT----------GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred ecceeecccc----------cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 777 78877 889999999955 4688999999999999875431 100000 0 0
Q ss_pred ccccCCCCcceeEEE---EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee---cCC--CCCceEE
Q 040987 489 RNHQPGDDVTVVVTL---VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY---EPH--RDAGISA 560 (762)
Q Consensus 489 ~~~~~~~~~~~~v~~---~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~h--~~~~v~~ 560 (762)
+.......+...+.. +.+..|...||+++. .|+.|+|||++.....+....... .-| +.-.+.+
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga--------~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGA--------ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccC--------CCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 000011112344444 566688899999983 599999999998766554432211 111 0235677
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC--CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 561 VAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK--KKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 561 ~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
+.....|.+|.+.+.|+.|+.||+.+-....... ..++ ..--..-..+||+.+|++|+ |...++|.+.
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~---------~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE---------FSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCcCchhh---------ccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence 7777778998888889999999998654433221 0111 11112335689999999998 9999999999
Q ss_pred CCe-EEEEeccccCceeEEEEeCC-CCEEEEEEcCCCCeEEEEECCCCc
Q 040987 638 RNV-LVAVIGETLTPIMNMSFVGS-SEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 638 ~~~-~~~~l~~~~~~v~~~~~s~d-g~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+.+ ....+.+|...|+.++|.|. -.-++++++|.. +++|++.++-
T Consensus 348 ~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~--~kiW~l~~~l 394 (720)
T KOG0321|consen 348 SPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR--VKIWRLSNGL 394 (720)
T ss_pred CccCChhhhhCcceEEEEEeeccccCCCceeeccCcc--eEEEeccCch
Confidence 874 45567899999999999983 345778899998 9999997654
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-20 Score=178.53 Aligned_cols=291 Identities=12% Similarity=0.114 Sum_probs=215.7
Q ss_pred EEEEEeCCEEEEEEcccceEEeeecCCc--cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc--c--eEEEEE
Q 040987 87 RLLVCTSNTVSIFSTSTGLQISSLEGHK--APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP--E--LLKTID 160 (762)
Q Consensus 87 ~la~~~~~~i~iwd~~~~~~~~~l~~h~--~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~--~--~~~~~~ 160 (762)
+.+..++..++|||....+....+..|+ ..|.++.|..... + .+++.+.|..|++|.-... + .+....
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-----l-vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~ 78 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-----L-VVASMAGDKVMRIKEKDGKTPEVPRVRKLT 78 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-----E-EEeecCCceeEEEecccCCCCccceeeccc
Confidence 4555556889999998766555554443 2488888888762 2 4566778999999974432 1 111111
Q ss_pred eccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceE
Q 040987 161 VKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQV 240 (762)
Q Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 240 (762)
+. ...++. ... ..+.+ ++|+..+.|+|||++ .+.+...+.+|...|++
T Consensus 79 gd-~~~Cv~--------------------~~s--~S~y~--------~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~ 126 (673)
T KOG4378|consen 79 GD-NAFCVA--------------------CAS--QSLYE--------ISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTY 126 (673)
T ss_pred cc-hHHHHh--------------------hhh--cceee--------eccCcCceeeehhhH-HHHHhhhccCCcceeEE
Confidence 11 111110 000 00111 789999999999999 44555889999999999
Q ss_pred EEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE-EEEeecCCeEEEEeccCCceeec
Q 040987 241 ITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI-VAAGDVTGRILIWRGFGDRTFAT 318 (762)
Q Consensus 241 ~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~v~vw~~~~~~~~~~ 318 (762)
+.+.-...|||+. ..|.|.|..+.++... ..+..+....|.-+.|+|..++ |.+++.+|.|.+||+.+...+-
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~t~~~t----t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~- 201 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTKTKQKT----TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF- 201 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecccCccc----cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-
Confidence 9999999999965 6789999999988743 2223333456778999997774 5578999999999997765432
Q ss_pred ccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCceeccCCCCCCe
Q 040987 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPL 397 (762)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v 397 (762)
.-...|..+...++|+|. ...|++.+.|..|.+||....+.........+.
T Consensus 202 ----------------------------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl 253 (673)
T KOG4378|consen 202 ----------------------------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL 253 (673)
T ss_pred ----------------------------chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCc
Confidence 345679999999999995 467889999999999999977766666677889
Q ss_pred EEEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 398 LYFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
..++|+++|.+|++|...|.|..||++. ..++..+..|. ..|++++|-|..
T Consensus 254 stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~----------~sVt~vafq~s~ 305 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD----------ASVTRVAFQPSP 305 (673)
T ss_pred ceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc----------cceeEEEeeecc
Confidence 9999999999999999999999999986 55677777766 789999998865
No 161
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.7e-22 Score=198.31 Aligned_cols=235 Identities=17% Similarity=0.268 Sum_probs=204.6
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+.+..|...+.++..-..++.+++|+.|..+-+|.+...... .+..|..+|.++.|+++..+|++|+.+|.|++||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 455568888888888777889999999999999988766554 4688999999999999999999999999999999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
++.++++.+|. ..+.++.|+|-+.+.+.++.|..+.+||.+...+...... | ...+..+.
T Consensus 102 Ak~vrtLtgh~----------~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s----~------~~vv~~l~ 161 (825)
T KOG0267|consen 102 AKIVRTLTGHL----------LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS----H------TRVVDVLR 161 (825)
T ss_pred hhhhhhhhccc----------cCcceeeeccceEEeccccccccceehhhhccCceeeecC----C------cceeEEEe
Confidence 99999999998 6778999999999999999999999999986665554432 2 66799999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|+|+|++++.++ +|..+++||...++....+ ..| .+.+.++.|+|..-+++.|+.|+++++||++
T Consensus 162 lsP~Gr~v~~g~---------ed~tvki~d~~agk~~~ef-----~~~-e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 162 LSPDGRWVASGG---------EDNTVKIWDLTAGKLSKEF-----KSH-EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ecCCCceeeccC---------Ccceeeeeccccccccccc-----ccc-cccccccccCchhhhhccCCCCceeeeeccc
Confidence 999999999998 8899999999999887766 567 8899999999999999999999999999999
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
+.+.+.... .....|.+.+|+|+|+.+++|.
T Consensus 227 tfe~I~s~~-----------~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 227 TFEVISSGK-----------PETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eeEEeeccC-----------CccCCceeeeecCCceeeecCc
Confidence 877665542 2367899999999999999986
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=6e-20 Score=165.32 Aligned_cols=276 Identities=16% Similarity=0.205 Sum_probs=199.2
Q ss_pred CceeecCCCEEEEEe-CCEEEEEEcccc--------eEE----eeec-CCccceeEEEEe-------CCCCcccceeeeE
Q 040987 78 PPAFSNDVKRLLVCT-SNTVSIFSTSTG--------LQI----SSLE-GHKAPVTTVIVV-------PASTPATKILSYC 136 (762)
Q Consensus 78 ~~~~s~dg~~la~~~-~~~i~iwd~~~~--------~~~----~~l~-~h~~~V~~v~~s-------~~~~~~~~l~~~l 136 (762)
.+.|||||.-|.+-+ |+.+.+|++... ... .+++ .....|...+|- |+. .++
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-------~l~ 126 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-------NLF 126 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-------cee
Confidence 389999999988888 799999998421 111 1111 123456666665 455 678
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++.+.|.-|++||.-+|+....+..-..+
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~--------------------------------------------------- 155 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQ--------------------------------------------------- 155 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhH---------------------------------------------------
Confidence 88999999999999999877665422100
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee---eeccCcCeEEEEEcC-C
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI---TLHHTKKLTVLAFHP-T 292 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp-~ 292 (762)
..-....+++|+|||.+|.+|.+..|++||+............. ..+..+-|.+++|+| +
T Consensus 156 ----------------de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~ 219 (406)
T KOG2919|consen 156 ----------------DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD 219 (406)
T ss_pred ----------------HhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC
Confidence 01123468999999999999999999999994333220011111 123356788999999 5
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
.+.+|.|+....+-|+.-.++ .++..+.+|.+.|+.++|.++|+.|++|+
T Consensus 220 ~~~~a~gsY~q~~giy~~~~~------------------------------~pl~llggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 220 SKTLAVGSYGQRVGIYNDDGR------------------------------RPLQLLGGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred CcceeeecccceeeeEecCCC------------------------------CceeeecccCCCeeeEEeccCcCeecccc
Confidence 569999999998888886555 35578889999999999999999999988
Q ss_pred c-CCeEEEEecCCCcee--ccCCCCC-CeE--EEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcc
Q 040987 373 K-EGVLVVWQLDTGKKK--FLPRIGS-PLL--YFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 373 ~-dg~i~~wd~~~~~~~--~~~~~~~-~v~--~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 445 (762)
. +..|..||++..+.. .+.+|.. .-. -+...|+++.|++|+.+|.|++||++. +.....+..+.
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--------- 340 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--------- 340 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc---------
Confidence 5 578999999876542 2333333 222 345578999999999999999999998 66566665555
Q ss_pred cCceeeEEEeCCCCEEEEeecC
Q 040987 446 KGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~d 467 (762)
..+..++++|--.++++++..
T Consensus 341 -d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 -DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -ccccceecCcccceeeeccCc
Confidence 678899999987777776543
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=1.2e-17 Score=178.71 Aligned_cols=369 Identities=22% Similarity=0.377 Sum_probs=281.9
Q ss_pred eeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCch-hhhheeeeeeeccC-cCeEEEEE-cCCCc-EEEEeec-CC
Q 040987 230 VTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVE-AERVVMRKITLHHT-KKLTVLAF-HPTQR-IVAAGDV-TG 303 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~-~~~~~~~~~~~~~~-~~v~~~~~-sp~~~-~l~~~~~-dg 303 (762)
....|...+..+.+.+.+..++.+ .++.+.+|+..... .. .....+. ..+..+.+ ++++. .++..+. |+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI-----KSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE-----EEEeccCCCceeeEEEECCCcceEEeccCCCCc
Confidence 456788899999999999999855 69999999999885 21 3333322 36777777 88887 5555444 99
Q ss_pred eEEEEeccC-CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEe
Q 040987 304 RILIWRGFG-DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQ 381 (762)
Q Consensus 304 ~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd 381 (762)
.+.+|+... . .....+..|...|..++|+|+++.+++++. ++.+++|+
T Consensus 135 ~~~~~~~~~~~------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
T COG2319 135 TVKLWDLSTPG------------------------------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184 (466)
T ss_pred cEEEEEecCCC------------------------------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEE
Confidence 999999865 2 234677889999999999999998888885 99999999
Q ss_pred cCCCcee-ccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEE-EEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 382 LDTGKKK-FLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIR-SISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 382 ~~~~~~~-~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
...+... ....|...+.+++|+|++. .++.++.|+.+.+||...+.... .+.+|. ... ...|+|++
T Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~----------~~~-~~~~~~~~ 253 (466)
T COG2319 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS----------DSV-VSSFSPDG 253 (466)
T ss_pred cCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC----------cce-eEeECCCC
Confidence 9986554 4555788999999999998 45554889999999988887777 577665 332 22899999
Q ss_pred CEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec
Q 040987 459 GLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~ 537 (762)
..+++++.++.+++|+...... .... ..| ...+.++.|+|++..+++++ .++.+.+|+..
T Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~------~~~v~~~~~~~~~~~~~~~~---------~d~~~~~~~~~ 314 (466)
T COG2319 254 SLLASGSSDGTIRLWDLRSSSSLLRTL----SGH------SSSVLSVAFSPDGKLLASGS---------SDGTVRLWDLE 314 (466)
T ss_pred CEEEEecCCCcEEEeeecCCCcEEEEE----ecC------CccEEEEEECCCCCEEEEee---------CCCcEEEEEcC
Confidence 8899999999999999987665 2222 222 56789999999999888876 56789999888
Q ss_pred CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEE
Q 040987 538 TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF 616 (762)
Q Consensus 538 ~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 616 (762)
+........ ...| ...+..+.|.+++..++.+ ..|+.+.+|+.......... .....+..+.+
T Consensus 315 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 378 (466)
T COG2319 315 TGKLLSSLT---LKGH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL------------EGHSNVLSVSF 378 (466)
T ss_pred CCceEEEee---eccc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEe------------cCCceEEEEEE
Confidence 776655443 2356 6678999994343555555 67889999999877621111 11122788999
Q ss_pred cCCCcEEEE-Ec-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 617 SADGSVLAV-AA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 617 s~dg~~la~-~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
++ ...+.. +. ++.+.+|+............+...+....+++++..+++++.++. +++|+..+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 443 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT--IRLWDLKT 443 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCc--EEEEeccC
Confidence 88 543443 44 899999999999888777654477999999999999999998988 99999998
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=4e-20 Score=166.94 Aligned_cols=286 Identities=14% Similarity=0.218 Sum_probs=205.8
Q ss_pred eeEEEEecCCCeEEEEecCCccee-ee-----ecCcccccCCceeecCC----CEEEEEe-CCEEEEEEcccceEEeeec
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSK-MI-----RGGRSYVSSPPAFSNDV----KRLLVCT-SNTVSIFSTSTGLQISSLE 111 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~-~~-----~~h~~~v~~~~~~s~dg----~~la~~~-~~~i~iwd~~~~~~~~~l~ 111 (762)
...+|+.+. ..+.+|+.+..-.. .+ ..|...-.. ++|+-|- -+||+++ -|.|+|.|+.++++...+.
T Consensus 55 ~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfyt-csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ 132 (385)
T KOG1034|consen 55 PQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYT-CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR 132 (385)
T ss_pred CceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEE-EEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee
Confidence 446666543 45667776642211 11 335555554 7777543 3677777 4999999999999999999
Q ss_pred CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEE
Q 040987 112 GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYL 191 (762)
Q Consensus 112 ~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (762)
+|...|+.+.|.|+.. .+++++|.|.+||+|++++..|+..+-
T Consensus 133 ghG~sINeik~~p~~~------qlvls~SkD~svRlwnI~~~~Cv~VfG------------------------------- 175 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRP------QLVLSASKDHSVRLWNIQTDVCVAVFG------------------------------- 175 (385)
T ss_pred ccCccchhhhcCCCCC------cEEEEecCCceEEEEeccCCeEEEEec-------------------------------
Confidence 9999999999999987 788999999999999999999887653
Q ss_pred EeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhh
Q 040987 192 SVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAER 270 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~ 270 (762)
-..+|...|.++.|+++|.+|++ |.|..+.+|++...+...
T Consensus 176 --------------------------------------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~ 217 (385)
T KOG1034|consen 176 --------------------------------------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN 217 (385)
T ss_pred --------------------------------------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence 34568889999999999999994 579999999998443221
Q ss_pred -----------------------heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEec-cCCceeeccccccccc
Q 040987 271 -----------------------VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRG-FGDRTFATNDNKMNLN 326 (762)
Q Consensus 271 -----------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~-~~~~~~~~~~~~~~~~ 326 (762)
.+......-|...|.|+.|- |+++++-+-++.|..|.. +-.+.+...
T Consensus 218 ~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~v------- 288 (385)
T KOG1034|consen 218 KLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNV------- 288 (385)
T ss_pred hhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhcc-------
Confidence 01111233577778888885 578999888999999986 212111100
Q ss_pred ccccccCCCCcccCCccccceeeeccccceeEEEEe--cCCCEEEEEecCCeEEEEecCCCceecc-----CCCCCCeEE
Q 040987 327 LMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS--SDGAYLYSGGKEGVLVVWQLDTGKKKFL-----PRIGSPLLY 399 (762)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~i~~wd~~~~~~~~~-----~~~~~~v~~ 399 (762)
.+.......+..+.-....|+-+.|. |-++.|+.|...|.+++||++..++... ......|..
T Consensus 289 ----------kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ 358 (385)
T KOG1034|consen 289 ----------KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQ 358 (385)
T ss_pred ----------CCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeee
Confidence 00001112233444455667777664 5578899999999999999998776322 223457899
Q ss_pred EEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 400 FTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 400 ~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
.+||.||..|+..+.|+.|.-||..
T Consensus 359 ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 359 TSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999999999854
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=165.14 Aligned_cols=277 Identities=16% Similarity=0.264 Sum_probs=196.1
Q ss_pred CEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCC-CCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc
Q 040987 86 KRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPA-STPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF 163 (762)
Q Consensus 86 ~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~ 163 (762)
..+|++. .|.|++||..+|+.+..+++|...++.+.|..+ +. ..+.+|+.||+|++||++.......+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~------h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSP------HGVISCSSDGTVRLWDIRSQAESARISWTQ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCC------CeeEEeccCCeEEEEEeecchhhhheeccC
Confidence 3456555 699999999999999999999999999999986 33 567899999999999998766554433111
Q ss_pred ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEE
Q 040987 164 SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243 (762)
Q Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 243 (762)
....+..+++.
T Consensus 115 ---------------------------------------------------------------------~~~~~f~~ld~ 125 (376)
T KOG1188|consen 115 ---------------------------------------------------------------------QSGTPFICLDL 125 (376)
T ss_pred ---------------------------------------------------------------------CCCCcceEeec
Confidence 00234456666
Q ss_pred CCCCCEEEEE-----eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceee
Q 040987 244 SSSGKYFGIR-----KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFA 317 (762)
Q Consensus 244 spdg~~la~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~ 317 (762)
...++.++++ .+-.|.+||++..+. .+......|.+.|+++.|+| +-++|++|+.||.|.++|++....
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq---~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-- 200 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQ---LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-- 200 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccc---hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc--
Confidence 6677778765 467899999998775 25567788999999999999 556999999999999999865421
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceeccCCCC--
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKFLPRIG-- 394 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-- 394 (762)
+ ..+...-.|...|..+.|..++ +.|.+.+...+..+|+++.+........+
T Consensus 201 ------------------------e-DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 201 ------------------------E-DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred ------------------------h-hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 1 1222233467789999998877 56888889999999999988764322211
Q ss_pred -----------CCeEEEEeCCCCCeEEEEec-CCcEEEEEcC---C---ceEEEEEccCCCCCCCCCcccCceeeEEEeC
Q 040987 395 -----------SPLLYFTESPDPSLSSISCA-DNQVHLLKMP---S---MEIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 395 -----------~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~---~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 456 (762)
..+.......++...+.++. .+...++-+. + .+.+..+.++ |...|.++.|..
T Consensus 256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~---------~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG---------HEEIVRDILFDV 326 (376)
T ss_pred hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC---------cHHHHHHHhhhc
Confidence 01111111223444444433 5555554433 2 2233334432 336788899998
Q ss_pred CCCEEEEeecCceEEEEEcC
Q 040987 457 DGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 457 ~~~~l~~~~~dg~i~i~d~~ 476 (762)
.+..+.+|++||.+.+|...
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccceeeccCCCceEEEEecC
Confidence 89999999999999999863
No 166
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.85 E-value=9.6e-20 Score=164.33 Aligned_cols=353 Identities=16% Similarity=0.198 Sum_probs=235.2
Q ss_pred EEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEE-eecCCeEEEEeccCCceeec
Q 040987 240 VITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAA-GDVTGRILIWRGFGDRTFAT 318 (762)
Q Consensus 240 ~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~v~vw~~~~~~~~~~ 318 (762)
-..|||+|+++|+..+..+.|-|..+-+.. +.+. --+.|..+.|..|..+++. ...++.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~-----qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--- 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLH-----QLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--- 83 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHH-----HHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeeccee---
Confidence 358999999999999999999999988765 2222 2467888999998876664 56788999999854432
Q ss_pred ccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEE-EEecCCeEEEEecCCCceeccCCCCCCe
Q 040987 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLY-SGGKEGVLVVWQLDTGKKKFLPRIGSPL 397 (762)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~v 397 (762)
...++....++.+++|||||+.|+ +...+-.|.+|.+.+.+...++.....+
T Consensus 84 ---------------------------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~ 136 (447)
T KOG4497|consen 84 ---------------------------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNV 136 (447)
T ss_pred ---------------------------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCc
Confidence 235566677899999999997655 4556788999999998887777777788
Q ss_pred EEEEeCCCCCeEEEEecCCc---EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec--CceEEE
Q 040987 398 LYFTESPDPSLSSISCADNQ---VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE--NYCIHF 472 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~d~~---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i 472 (762)
..++|+|||++.+..+.... +.+..-.....++.+.... -....+.|+|||..|++-.. +-.|..
T Consensus 137 kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT----------~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 137 KGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT----------IDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred eeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc----------ccccCceECCCCcEEEEecchhhheeee
Confidence 99999999999988765432 2222222333444444333 34578999999998876432 122222
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe---
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV--- 549 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--- 549 (762)
|.- .-.+..++|+|.+++|++|+ .|+.+++.+--+.+...++-...
T Consensus 207 Ye~----------------------~lG~k~v~wsP~~qflavGs---------yD~~lrvlnh~tWk~f~eflhl~s~~ 255 (447)
T KOG4497|consen 207 YER----------------------GLGLKFVEWSPCNQFLAVGS---------YDQMLRVLNHFTWKPFGEFLHLCSYH 255 (447)
T ss_pred eee----------------------ccceeEEEeccccceEEeec---------cchhhhhhceeeeeehhhhccchhcc
Confidence 222 23478899999999999999 88999987765544332221100
Q ss_pred -----------ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc-cccccc--CCceeeeeecccCCCCeEEEE
Q 040987 550 -----------YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL-QQKDLQ--SSGWSCHAVGSYKKKAMTAAA 615 (762)
Q Consensus 550 -----------~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~i~~~~ 615 (762)
+..- .-...++.|.|.. -...+|...... .+...+ -...++........-.+.-++
T Consensus 256 dp~~~~~~ke~~~~~-ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 256 DPTLHLLEKETFSIV-QLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred Cchhhhhhhhhcchh-hhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 0000 0112334444421 112233222110 000000 001111112223356778899
Q ss_pred EcCCCcEEEEEcC---CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 616 FSADGSVLAVAAE---TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 616 ~s~dg~~la~~~d---~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
||+|..++|+-+| +.+.+||++..++...+. ...+|....|.|....|+.+..... +++|....
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~sr--LY~W~psg 392 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSR--LYFWAPSG 392 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCce--EEEEcCCC
Confidence 9999999999874 789999999988877775 5678999999999888888876655 99998664
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=6.5e-19 Score=163.85 Aligned_cols=319 Identities=15% Similarity=0.184 Sum_probs=220.4
Q ss_pred ccCCCceEEEECCCCC-EEE-EEeCCeEEEEEccCchhh----hheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEE
Q 040987 233 AEMKEPQVITISSSGK-YFG-IRKQRKLLIWKVPDVEAE----RVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~-~la-~~~~~~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 306 (762)
....++..+.|.++.. .+| +|.|..|++|.+...+.. .......+..|...|+++.|+|+|..||+|+.+|.|.
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 3567889999999877 888 558999999988755433 1234456778999999999999999999999999999
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+|....-+.+. .+...-.....+.....+.+|...|+.++|+|++.++++++.|..+++||+..|+
T Consensus 91 lWk~~~~~~~~--------------~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 91 LWKQGDVRIFD--------------ADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred EEEecCcCCcc--------------ccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 99865321110 0001111223355667888999999999999999999999999999999999999
Q ss_pred ee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc--------cCCCCC-CCCCc----ccCceeeE
Q 040987 387 KK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS--------GIKLPC-PLPEE----YKGLCRDI 452 (762)
Q Consensus 387 ~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~-~~~~~----~~~~v~~~ 452 (762)
.. .+..|...+..++|.|-++++++-+.|...+.+.+...+.+.... ++..+. ..... .......+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 85 567788899999999999999998888877777766543333222 000000 00001 11345678
Q ss_pred EEeCCCCEEEEeec----C-----ceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEec--------------
Q 040987 453 AFNHDGGLVALRAE----N-----YCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQ-------------- 508 (762)
Q Consensus 453 ~~s~~~~~l~~~~~----d-----g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------------- 508 (762)
+|+|||.++++... . +..++|+-..-+. ...++.. ......+.|+|
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~----------~k~~lavr~~pVy~elrp~~~~~~~ 306 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP----------KKPALAVRFSPVYYELRPLSSEKFL 306 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC----------CcceEEEEeeeeEEEeccccccccc
Confidence 99999999887642 1 2334444332111 1111111 12223333332
Q ss_pred ----CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 509 ----DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 509 ----~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
-+..+|.++ .+.|.+||.++......... -| -..|+.++|++||..|+..+.||...+-.+
T Consensus 307 ~~lpyrlvfaiAt----------~~svyvydtq~~~P~~~v~n----ih-y~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 307 FVLPYRLVFAIAT----------KNSVYVYDTQTLEPLAVVDN----IH-YSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred cccccceEEEEee----------cceEEEeccccccceEEEee----ee-eeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 233455554 46899999999887776653 36 678999999999999999999998877777
Q ss_pred cccccc
Q 040987 585 NDELQQ 590 (762)
Q Consensus 585 ~~~~~~ 590 (762)
...++-
T Consensus 372 e~~elg 377 (434)
T KOG1009|consen 372 EPWELG 377 (434)
T ss_pred cchhcc
Confidence 655443
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=4.6e-18 Score=172.34 Aligned_cols=285 Identities=14% Similarity=0.162 Sum_probs=181.5
Q ss_pred EEecCCeEEEEecCC-Cce--eccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCC-ceEEEEEccCCCCCCCCCc
Q 040987 370 SGGKEGVLVVWQLDT-GKK--KFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPS-MEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 370 s~~~dg~i~~wd~~~-~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~ 444 (762)
+...++.|.+||+.+ ++. ............++++|++++|++++ .++.|.+|++.. +.. ........
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~~------- 78 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESPL------- 78 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeecC-------
Confidence 336689999999964 432 23333445677899999999988765 478899999873 332 11111110
Q ss_pred ccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 445 YKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
.+....++++|+++++++++. ++.|.+|++.+...+......... ......++++|+|+++++++.
T Consensus 79 -~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~p~g~~l~v~~~----- 145 (330)
T PRK11028 79 -PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-------LEGCHSANIDPDNRTLWVPCL----- 145 (330)
T ss_pred -CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-------CCcccEeEeCCCCCEEEEeeC-----
Confidence 034578999999998888764 789999999743322111111110 223567889999999987763
Q ss_pred CCCceeEEEEEEecCCCceeEE-EEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEEcccc--cccccccCCcee
Q 040987 524 GIGSLVCLKFWVSGTQNKEFTL-STIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDE--LQQKDLQSSGWS 599 (762)
Q Consensus 524 ~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~ 599 (762)
.++.|.+||+.+....... ........ ......++|+|||++++++.. +++|.+|++... ... ... ...
T Consensus 146 ---~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~-~~~--~~~ 218 (330)
T PRK11028 146 ---KEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE-CVQ--TLD 218 (330)
T ss_pred ---CCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE-EEE--EEe
Confidence 6789999999864322110 00000111 334668999999999988876 899999999742 221 110 000
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCe----EEEEeccccCceeEEEEeCCCCEEEEEEc-CCC
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNV----LVAVIGETLTPIMNMSFVGSSEYLVATSW-GSK 672 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~----~~~~l~~~~~~v~~~~~s~dg~~l~s~~~-d~~ 672 (762)
.......+......+.++|||++|+++. ++.|.+|+++... .+...... .....+.|+|||++|++++. ++.
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCc
Confidence 0000001122344689999999999985 7899999986532 22222211 23567999999999999875 666
Q ss_pred CeEEEEECC--CCce
Q 040987 673 PQLSVWNMS--KLSI 685 (762)
Q Consensus 673 ~~v~vwd~~--~~~~ 685 (762)
|.+|+++ ++.+
T Consensus 298 --v~v~~~~~~~g~l 310 (330)
T PRK11028 298 --ISVYEIDGETGLL 310 (330)
T ss_pred --EEEEEEcCCCCcE
Confidence 9999874 4444
No 169
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.83 E-value=1.3e-16 Score=160.19 Aligned_cols=329 Identities=15% Similarity=0.123 Sum_probs=209.5
Q ss_pred EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCe
Q 040987 297 AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGV 376 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 376 (762)
++-..+|.|.+.|..+.+.+ ..+......-..+.|+|||+++++++.||.
T Consensus 10 V~~~~~~~v~viD~~t~~~~------------------------------~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~ 59 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVV------------------------------ARIPTGGAPHAGLKFSPDGRYLYVANRDGT 59 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEE------------------------------EEEE-STTEEEEEE-TT-SSEEEEEETTSE
T ss_pred EEecCCCEEEEEECCCCeEE------------------------------EEEcCCCCceeEEEecCCCCEEEEEcCCCe
Confidence 45566899999998776543 444443333345789999999999999999
Q ss_pred EEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 377 LVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 377 i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
|.++|+.+++.......+.....+++|+||++++++. ..+.+.++|.++.+.++.+.....+... ....+..+..+
T Consensus 60 vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s 136 (369)
T PF02239_consen 60 VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVAS 136 (369)
T ss_dssp EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-
T ss_pred EEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEec
Confidence 9999999999877667777789999999999999876 4889999999999999887654322111 12467788888
Q ss_pred CCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE
Q 040987 456 HDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 456 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
|....+++.- +.+.|.+.|....+.+....... ........|+|++++++++.. ..+.|-++
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~---------g~~~~D~~~dpdgry~~va~~--------~sn~i~vi 199 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV---------GRFPHDGGFDPDGRYFLVAAN--------GSNKIAVI 199 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-----------TTEEEEEE-TTSSEEEEEEG--------GGTEEEEE
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeecc---------cccccccccCcccceeeeccc--------ccceeEEE
Confidence 8888555554 45899999987765443222111 234678899999999887754 56689999
Q ss_pred EecCCCceeEEEEEeecCCCCCceEEEEEcCC----------CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 535 VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN----------RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 535 d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
|..+++....+... ..+| ...+..+ .+|. +...++.-....+.+||....+....+
T Consensus 200 D~~~~k~v~~i~~g-~~p~-~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I----------- 265 (369)
T PF02239_consen 200 DTKTGKLVALIDTG-KKPH-PGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI----------- 265 (369)
T ss_dssp ETTTTEEEEEEE-S-SSBE-ETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE-----------
T ss_pred eeccceEEEEeecc-cccc-ccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE-----------
Confidence 98887665544321 1233 3333332 2222 222212111223445665555544443
Q ss_pred ccCCCCeEEEEEcCCCcEEEEE---c--CCeEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEEEEcCCCCeEEEE
Q 040987 605 SYKKKAMTAAAFSADGSVLAVA---A--ETVITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVATSWGSKPQLSVW 678 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~---~--d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s~~~d~~~~v~vw 678 (762)
.....+ ..+.-+|+++++.+. + .++|.++|.++.+.+..+.... ..+..+.|++||+.+..+..++.+.|.+|
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 333444 778889999999998 3 4899999999998888875332 25899999999999888877775679999
Q ss_pred ECCCCceeeEEE
Q 040987 679 NMSKLSISWSYL 690 (762)
Q Consensus 679 d~~~~~~~~~~~ 690 (762)
|..+.++..++.
T Consensus 345 D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 345 DAKTLKEKKRIP 356 (369)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCcEEEEEEE
Confidence 999999999888
No 170
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=5.7e-19 Score=162.44 Aligned_cols=211 Identities=13% Similarity=0.193 Sum_probs=161.2
Q ss_pred eecCcccccCCceeecCCC--EEEEEeC-CEEEEEEccc----------------ceEEeeecCCccceeEEEEeCCCCc
Q 040987 68 IRGGRSYVSSPPAFSNDVK--RLLVCTS-NTVSIFSTST----------------GLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~--~la~~~~-~~i~iwd~~~----------------~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
..+|.+.+.. +.-++-|+ +.|+-++ |.|.|||+.. .+++.++.+|.+.=.+++|||-..
T Consensus 147 ~i~h~g~~NR-vr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~- 224 (440)
T KOG0302|consen 147 SIPHYGGINR-VRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT- 224 (440)
T ss_pred ccccccccce-eeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-
Confidence 3566666665 66666553 4444444 9999999742 357889999999999999999543
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (762)
.-|+||.--+.|++|...+|.-...
T Consensus 225 -----g~LlsGDc~~~I~lw~~~~g~W~vd-------------------------------------------------- 249 (440)
T KOG0302|consen 225 -----GRLLSGDCVKGIHLWEPSTGSWKVD-------------------------------------------------- 249 (440)
T ss_pred -----cccccCccccceEeeeeccCceeec--------------------------------------------------
Confidence 2344887778899998877653210
Q ss_pred CCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-EE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEE
Q 040987 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-GI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTV 286 (762)
Q Consensus 209 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 286 (762)
...+.+|+..|..++|||..+-+ |+ +.|+.|+|||++.+... .. -....|...|+.
T Consensus 250 -------------------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--~~-~~~kAh~sDVNV 307 (440)
T KOG0302|consen 250 -------------------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--AA-VSTKAHNSDVNV 307 (440)
T ss_pred -------------------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--ce-eEeeccCCceee
Confidence 02344589999999999977654 54 47999999999988543 11 234789999999
Q ss_pred EEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-C
Q 040987 287 LAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-G 365 (762)
Q Consensus 287 ~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g 365 (762)
+.|+.+-.+||+|+.||+++|||++.-+ ..+++..++.|..+|+++.|+|. .
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~---------------------------~~~pVA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFK---------------------------SGQPVATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhcc---------------------------CCCcceeEEeccCCeeEEEeccccC
Confidence 9999988899999999999999985432 22577899999999999999984 4
Q ss_pred CEEEEEecCCeEEEEecCC
Q 040987 366 AYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~ 384 (762)
..|++++.|.+|.+||+..
T Consensus 361 s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 361 SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceEEeccCCCcEEEEEeec
Confidence 6788888999999999864
No 171
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=9.6e-19 Score=160.98 Aligned_cols=250 Identities=15% Similarity=0.188 Sum_probs=177.3
Q ss_pred cCCCCCCeEEEEeCCCC--CeEEEEecCCcEEEEEcCC----------------ceEEEEEccCCCCCCCCCcccCceee
Q 040987 390 LPRIGSPLLYFTESPDP--SLSSISCADNQVHLLKMPS----------------MEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
...|.+.+..+.-++-+ .+.++-+..|.|+||++.. .+++.++.+|. +.-..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk----------~EGy~ 216 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK----------GEGYG 216 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC----------cccee
Confidence 34455556666555543 4455556788999999853 23455556655 66689
Q ss_pred EEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCcee
Q 040987 452 IAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 452 ~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~ 529 (762)
++|||-. ..|++|..-+.|++|...++.- ..... +...|...|..++|||..+ .||+++ -|+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W----~vd~~---Pf~gH~~SVEDLqWSptE~~vfaScS---------~Dg 280 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSW----KVDQR---PFTGHTKSVEDLQWSPTEDGVFASCS---------CDG 280 (440)
T ss_pred eecccccccccccCccccceEeeeeccCce----eecCc---cccccccchhhhccCCccCceEEeee---------cCc
Confidence 9999932 2477777778899999988632 22111 2223488899999999754 677777 899
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCC
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
+|+|||++.+.....+.. .+| .+.|+-+.|+.+-.+||+|+.||+++|||++.-+... +...+..|..
T Consensus 281 sIrIWDiRs~~~~~~~~~---kAh-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~--------pVA~fk~Hk~ 348 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVST---KAH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ--------PVATFKYHKA 348 (440)
T ss_pred eEEEEEecCCCccceeEe---ecc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC--------cceeEEeccC
Confidence 999999999865544433 688 8899999999998899999999999999998655432 2345568999
Q ss_pred CeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCCe-----------E-----EEEeccc--cCceeEEEEeCC-CCEEEEEE
Q 040987 610 AMTAAAFSADG-SVLAVAA-ETVITLWDPDRNV-----------L-----VAVIGET--LTPIMNMSFVGS-SEYLVATS 668 (762)
Q Consensus 610 ~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~~-----------~-----~~~l~~~--~~~v~~~~~s~d-g~~l~s~~ 668 (762)
+|+++.|+|.. ..|++++ |..|.|||+.... - .+.+--| ...+..+.|++. ..+|++.+
T Consensus 349 pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 349 PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 99999999854 3444444 9999999985321 0 0111223 334888999984 56899999
Q ss_pred cCCCCeEEEEEC
Q 040987 669 WGSKPQLSVWNM 680 (762)
Q Consensus 669 ~d~~~~v~vwd~ 680 (762)
.|| +.||..
T Consensus 429 ~dG---fnVfkt 437 (440)
T KOG0302|consen 429 IDG---FNVFKT 437 (440)
T ss_pred ccc---eeEEEe
Confidence 999 777753
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=3.2e-19 Score=156.14 Aligned_cols=298 Identities=16% Similarity=0.187 Sum_probs=201.2
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC--CCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR--IGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
.+...+++|...++++.|..++ +|++|..-|.+.+|++.+.+...... +...|+.+..-|+ ..+.+-+.|..+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 4567888999999999998877 48899999999999999988765433 5567888888887 556667799999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEE-----eCCCC----EEEEeecCc-eEEEEEcCCCCceeeEEeecccc
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF-----NHDGG----LVALRAENY-CIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~----~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
++..+.-+..-. -.+.++.| .+.++ .++.-++.. .+.+-|......+.......
T Consensus 83 ~ia~s~~i~i~S-------------i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~--- 146 (323)
T KOG0322|consen 83 TIAYSAFISIHS-------------IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSE--- 146 (323)
T ss_pred EccCcceEEEee-------------eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchh---
Confidence 998754333211 01122222 22221 122211111 01112221111111100000
Q ss_pred cCCCCcceeEEEEEEec-CC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE-----EeecCCCCCceEEEEEc
Q 040987 492 QPGDDVTVVVTLVALSQ-DG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST-----IVYEPHRDAGISAVAFH 564 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp-~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~h~~~~v~~~~~s 564 (762)
....+.+.+..+.. ++ ..++.++. ++|.+.+||+.++..+..++. .....| ..+|.++.|.
T Consensus 147 ---~~Klgsvmc~~~~~~c~s~~lllaGy--------Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash-~qpvlsldya 214 (323)
T KOG0322|consen 147 ---RSKLGSVMCQDKDHACGSTFLLLAGY--------ESGHVVIWDLSTGDKIIQLPQSSKVESPNASH-KQPVLSLDYA 214 (323)
T ss_pred ---ccccCceeeeeccccccceEEEEEec--------cCCeEEEEEccCCceeeccccccccccchhhc-cCcceeeeec
Confidence 01144566665433 23 34444443 889999999999855444332 123457 8899999998
Q ss_pred CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE
Q 040987 565 PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA 643 (762)
Q Consensus 565 pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~ 643 (762)
+.-..=++++.+..+..|+++......... .. .......|..+.+-||++.+|+++ |++|+||+.++...++
T Consensus 215 s~~~rGisgga~dkl~~~Sl~~s~gslq~~--~e-----~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 215 SSCDRGISGGADDKLVMYSLNHSTGSLQIR--KE-----ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred hhhcCCcCCCccccceeeeeccccCccccc--ce-----EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh
Confidence 876666778888889999886542221111 11 112356788899999999999999 9999999999999999
Q ss_pred EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 644 VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
.++-|...|++++|+||...+|++|.|+. |.+|++
T Consensus 288 VLkyHsagvn~vAfspd~~lmAaaskD~r--ISLWkL 322 (323)
T KOG0322|consen 288 VLKYHSAGVNAVAFSPDCELMAAASKDAR--ISLWKL 322 (323)
T ss_pred hhhhhhcceeEEEeCCCCchhhhccCCce--EEeeec
Confidence 99999999999999999999999999998 999986
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=7.6e-19 Score=165.31 Aligned_cols=233 Identities=16% Similarity=0.167 Sum_probs=176.2
Q ss_pred cceeEEEEecCCCeEEEEecCC---ccee-------------------eeecCcccccCCceeecCCC-EEEEEe-CCEE
Q 040987 41 SRSFIFAVARSSGLCRTAEYPA---VNSK-------------------MIRGGRSYVSSPPAFSNDVK-RLLVCT-SNTV 96 (762)
Q Consensus 41 ~~~~~~a~~~~~g~i~~~~~~~---~~~~-------------------~~~~h~~~v~~~~~~s~dg~-~la~~~-~~~i 96 (762)
..++|+|+|.-+..|.|||+.- .... .-.+|++.|.. ++|+..-+ .||+|+ |.+|
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~-Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA-LSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH-HHhccccceeEEecCCCceE
Confidence 3688999999999999999762 1111 12479999986 99988754 677888 8999
Q ss_pred EEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc-ceEEEEEeccceEEEeeccccc
Q 040987 97 SIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP-ELLKTIDVKFSIFSMVIPSLLR 175 (762)
Q Consensus 97 ~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~-~~~~~~~~~~~v~~~~~~~~~~ 175 (762)
++||+.+|++..++..|.+.|.+++|.|... .+|++||.|++|.+.|.+.. ..-..++....|..+.+..
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p------~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~--- 339 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEP------SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDP--- 339 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCc------eEEEeccccceEEeeeccCccccCceEEeccceEEEEecC---
Confidence 9999999999999999999999999999987 78999999999999999842 2333445555566554411
Q ss_pred CCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-E-EE
Q 040987 176 QPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-G-IR 253 (762)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a-~~ 253 (762)
..+ ..| .+++.||.|+-+|++.....--....|.+.|.++++++.-..+ + ++
T Consensus 340 -------~se--~~f-----------------~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 340 -------HSE--NSF-----------------FVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred -------CCc--eeE-----------------EEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc
Confidence 111 111 4578999999999998744437788899999999999987655 4 45
Q ss_pred eCCeEEEEEccCchhhhheeeeeeecc---CcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCce
Q 040987 254 KQRKLLIWKVPDVEAERVVMRKITLHH---TKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRT 315 (762)
Q Consensus 254 ~~~~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~ 315 (762)
.++.+.+|++...... ....| -+...|.++.|+-. .+|.|+..+.++|||+.+...
T Consensus 394 ~d~~Vklw~~~~~~~~------~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 394 TDKVVKLWKFDVDSPK------SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccceEEEEeecCCCCc------ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 8999999999866542 12222 12356777888654 677888888999999876643
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=7.3e-17 Score=163.54 Aligned_cols=289 Identities=12% Similarity=0.149 Sum_probs=181.9
Q ss_pred EEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee-cCCeEEEEeccCCceeeccccccccccc
Q 040987 250 FGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD-VTGRILIWRGFGDRTFATNDNKMNLNLM 328 (762)
Q Consensus 250 la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 328 (762)
++...++.|.+|++.+.... ...+.. .+.+....++++|++++|++++ .++.|.+|++.....+.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l--~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~----------- 71 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGAL--TLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT----------- 71 (330)
T ss_pred EEcCCCCCEEEEEECCCCce--eeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------
Confidence 34457899999999643211 111222 2345678899999999887764 47889999986321111
Q ss_pred ccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEecCCCc-e---eccCCCCCCeEEEEeC
Q 040987 329 NNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGK-K---KFLPRIGSPLLYFTES 403 (762)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~-~---~~~~~~~~~v~~~~~s 403 (762)
...... .......++|+|++++|++++. ++.|.+|++++.. . ............++++
T Consensus 72 ----------------~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (330)
T PRK11028 72 ----------------FAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANID 134 (330)
T ss_pred ----------------Eeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeC
Confidence 011111 1224568999999999988764 7899999997432 1 1222233456778899
Q ss_pred CCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCC-c
Q 040987 404 PDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDR-G 480 (762)
Q Consensus 404 ~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~-~ 480 (762)
|++++++++.. ++.|.+||+.+...+.......... + .......++|+|++++++++.. ++.|.+|++.... .
T Consensus 135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~--~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT--V--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec--C--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 99999876654 6899999998633221100000000 0 0134567999999999988876 8999999997421 2
Q ss_pred eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEE
Q 040987 481 ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISA 560 (762)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~ 560 (762)
....... ...............+.++|+|++++++.. .++.|.+|+++.......+......+ .....
T Consensus 211 ~~~~~~~-~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--------~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~ 278 (330)
T PRK11028 211 IECVQTL-DMMPADFSDTRWAADIHITPDGRHLYACDR--------TASLISVFSVSEDGSVLSFEGHQPTE---TQPRG 278 (330)
T ss_pred EEEEEEE-ecCCCcCCCCccceeEEECCCCCEEEEecC--------CCCeEEEEEEeCCCCeEEEeEEEecc---ccCCc
Confidence 2111111 111000001223456899999999999863 57899999997654333332221111 23457
Q ss_pred EEEcCCCCeEEEEeC-CCcEEEEEcc
Q 040987 561 VAFHPNRRAAVSSSY-GGDFKVWICN 585 (762)
Q Consensus 561 ~~~spd~~~l~~~~~-dg~i~iwd~~ 585 (762)
+.++|||++|+++.. +++|.+|+++
T Consensus 279 ~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 279 FNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEc
Confidence 899999999998775 8899999885
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=7.9e-18 Score=149.37 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=200.0
Q ss_pred ceeEEEEecC----CCeEEEEecCCc----ceeeeecCcccccCCceeecCC-CEEEEEeC--------CEEEEEEccc-
Q 040987 42 RSFIFAVARS----SGLCRTAEYPAV----NSKMIRGGRSYVSSPPAFSNDV-KRLLVCTS--------NTVSIFSTST- 103 (762)
Q Consensus 42 ~~~~~a~~~~----~g~i~~~~~~~~----~~~~~~~h~~~v~~~~~~s~dg-~~la~~~~--------~~i~iwd~~~- 103 (762)
+...|.+|.. ++.|.+..+... ..+.+.-|.+.|.. ++-+|-. +.|+++.. ..+.||.+..
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~-las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWD-LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceeh-hhcCCCCCceEEEEEeccCCCcceeeEEEEecccc
Confidence 4556666663 688888887742 23356778889997 9999855 56666642 3688999753
Q ss_pred --------ceEEeeec-CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceE-EEEEeccceEEEeeccc
Q 040987 104 --------GLQISSLE-GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL-KTIDVKFSIFSMVIPSL 173 (762)
Q Consensus 104 --------~~~~~~l~-~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~-~~~~~~~~v~~~~~~~~ 173 (762)
-+++..|. .+-+.|.|+.|.|++. -|++-. |..|.+|++.++..+ ..+...
T Consensus 104 ~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-------klasm~-dn~i~l~~l~ess~~vaev~ss----------- 164 (370)
T KOG1007|consen 104 LGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-------KLASMD-DNNIVLWSLDESSKIVAEVLSS----------- 164 (370)
T ss_pred cCccccchhhHhhcCCHHHhCceeeEEEcCCCC-------eeEEec-cCceEEEEcccCcchheeeccc-----------
Confidence 23455565 5667999999999994 344444 899999999987652 222110
Q ss_pred ccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC--CCCEEE
Q 040987 174 LRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS--SGKYFG 251 (762)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la 251 (762)
++. .+.....+-+||| ||+.++
T Consensus 165 ------------------------------------~s~--------------------e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 165 ------------------------------------ESA--------------------EMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred ------------------------------------ccc--------------------cccceecccccCCCCccceEE
Confidence 111 1223344557888 899999
Q ss_pred EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCceeeccccccccccccc
Q 040987 252 IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNN 330 (762)
Q Consensus 252 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 330 (762)
+..++++..||+++..+ ...+...|...|..+.|+|+-+ +|++|+.||.|++||.+..+
T Consensus 189 tt~d~tl~~~D~RT~~~----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---------------- 248 (370)
T KOG1007|consen 189 TTSDSTLQFWDLRTMKK----NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---------------- 248 (370)
T ss_pred EeCCCcEEEEEccchhh----hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----------------
Confidence 99999999999998774 3466778999999999999765 78899999999999986543
Q ss_pred ccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCC-------------------------
Q 040987 331 EEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDT------------------------- 384 (762)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~------------------------- 384 (762)
.+++.+.+|...|+++.|+|. .++|++++.|..|.+|....
T Consensus 249 -------------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 249 -------------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred -------------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 456889999999999999985 46788999999999996532
Q ss_pred -----CceeccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcC
Q 040987 385 -----GKKKFLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMP 424 (762)
Q Consensus 385 -----~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~ 424 (762)
|....+..|...|++++||.-..+ +++-+.||.+.|=.+.
T Consensus 316 kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 111234567788999999876665 5566789988876554
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.4e-19 Score=190.38 Aligned_cols=284 Identities=14% Similarity=0.191 Sum_probs=209.7
Q ss_pred EEEEecCCC-EEEEEe----------cCCeEEEEecC--CCc----eeccCCCCCCeEEEEeCCCCCe----EEEEecCC
Q 040987 358 VLIFSSDGA-YLYSGG----------KEGVLVVWQLD--TGK----KKFLPRIGSPLLYFTESPDPSL----SSISCADN 416 (762)
Q Consensus 358 ~~~~s~~g~-~l~s~~----------~dg~i~~wd~~--~~~----~~~~~~~~~~v~~~~~s~~~~~----l~~~~~d~ 416 (762)
.++|+|++. ++++|. .+.++.+|.+. ... .........+...++|.+.|.. |+.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 468888885 444332 23445555443 332 1223334567889999988766 88888999
Q ss_pred cEEEEEcCCc------eEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecc
Q 040987 417 QVHLLKMPSM------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 417 ~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 489 (762)
.|.+||...- ..+.+...|. +.|..+.|++... +||+|+.||.|.|||+...+.......
T Consensus 91 ~I~ly~p~~~~~~~~~~~la~~~~h~----------G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~--- 157 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASEEVLATKSKHT----------GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS--- 157 (1049)
T ss_pred ceEEecchhhccCcchHHHhhhcccC----------CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC---
Confidence 9999998752 1233344444 8999999999655 999999999999999987654443321
Q ss_pred cccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC
Q 040987 490 NHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~ 568 (762)
......|.+++|+..-. .|++++ .++.+.|||++..+.+..+.. .+. ...+..++|+|+..
T Consensus 158 -----~~~~~eI~~lsWNrkvqhILAS~s---------~sg~~~iWDlr~~~pii~ls~---~~~-~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 158 -----QAPPSEIKCLSWNRKVSHILASGS---------PSGRAVIWDLRKKKPIIKLSD---TPG-RMHCSVLAWHPDHA 219 (1049)
T ss_pred -----CCCcccceEeccchhhhHHhhccC---------CCCCceeccccCCCccccccc---CCC-ccceeeeeeCCCCc
Confidence 11167799999988654 566666 778999999998877766643 222 34578999999854
Q ss_pred -eEEEEeCCC---cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCCeEE
Q 040987 569 -AAVSSSYGG---DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRNVLV 642 (762)
Q Consensus 569 -~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~~~~ 642 (762)
.|++++.|. .|.+||++....... .+..|...|.++.|++.+ ++|++++ |+.|.+|+.++++.+
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k----------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLK----------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchh----------hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 566666553 599999876543322 245799999999999976 7788887 999999999999999
Q ss_pred EEeccccCceeEEEEeCCCC-EEEEEEcCCCCeEEEEECCCCc
Q 040987 643 AVIGETLTPIMNMSFVGSSE-YLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 643 ~~l~~~~~~v~~~~~s~dg~-~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
..+....+.+..+.|.|... .++.++.||. |.|+.+.++.
T Consensus 290 ~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk--I~I~sl~~~~ 330 (1049)
T KOG0307|consen 290 GELPAQGNWCFDVQWCPRNPSVMAAASFDGK--ISIYSLQGTD 330 (1049)
T ss_pred eecCCCCcceeeeeecCCCcchhhhheeccc--eeeeeeecCC
Confidence 99988778899999999544 8888999999 9999998765
No 177
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.1e-17 Score=157.64 Aligned_cols=302 Identities=14% Similarity=0.179 Sum_probs=202.2
Q ss_pred eEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccC----cCeEEEEEcC-------CCcEEEEeecCC
Q 040987 239 QVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHT----KKLTVLAFHP-------TQRIVAAGDVTG 303 (762)
Q Consensus 239 ~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~----~~v~~~~~sp-------~~~~l~~~~~dg 303 (762)
..+.+-|...+|+++. ...+.+|=....+. .+...|. ....|++|.. .|+++|.|+.|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~------nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp 202 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE------NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDP 202 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc------ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCc
Confidence 3556778788887662 24455554444432 2333332 2234666643 357999999999
Q ss_pred eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEec
Q 040987 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQL 382 (762)
Q Consensus 304 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~ 382 (762)
.|.|||+.-...+.+.-.... ..+......++.-..-.+|++.|..++|+.+ .+.|++|+.|.+|.+||+
T Consensus 203 ~IeIWDLDI~d~v~P~~~LGs---------~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 203 EIEIWDLDIVDAVLPCVTLGS---------KASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eeEEeccccccccccceeech---------hhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 999999865433221100000 0000000011111223579999999999765 357899999999999999
Q ss_pred CCCceec-cCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCC---ceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 383 DTGKKKF-LPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPS---MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 383 ~~~~~~~-~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
.++++.. +..|+..|.++.|+|. ...|++|+.|+++.+.|.+. ......+. +.|..++|.|.
T Consensus 274 ~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-------------g~VEkv~w~~~ 340 (463)
T KOG0270|consen 274 DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-------------GEVEKVAWDPH 340 (463)
T ss_pred CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-------------cceEEEEecCC
Confidence 9999965 4458889999999985 57899999999999999984 11222222 67889999996
Q ss_pred CC-EEEEeecCceEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEE
Q 040987 458 GG-LVALRAENYCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 458 ~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
.. .+++++.||+|+-+|++.. +.+.++..+ ...|.++++++.-. ++++++ .++.+++|
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH----------d~~ISgl~~n~~~p~~l~t~s---------~d~~Vklw 401 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH----------DDEISGLSVNIQTPGLLSTAS---------TDKVVKLW 401 (463)
T ss_pred CceeEEEecCCceEEeeecCCCCCceeEEEec----------cCCcceEEecCCCCcceeecc---------ccceEEEE
Confidence 54 5667779999999999876 556665543 77899999988654 566766 89999999
Q ss_pred EecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccccc
Q 040987 535 VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 535 d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
++............ -. -+...|.++.|+-. .+++|+..+.++|||+.+...+.
T Consensus 402 ~~~~~~~~~v~~~~---~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHS---FK-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eecCCCCccccccc---cc-ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 99866543221110 00 23356677777643 57788888889999998765443
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=2.8e-18 Score=150.36 Aligned_cols=300 Identities=14% Similarity=0.180 Sum_probs=198.8
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHP 353 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 353 (762)
-.+.+|.+.++++.|..+++ |.+|..-|.|++|++.+.+.. ..++ .|.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~------------------------------~~~r~~g~ 56 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL------------------------------PLIRLFGR 56 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccc------------------------------hhhhhhcc
Confidence 34558999999999998875 889999999999999877543 3444 466
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEE-----eCCCCC---eEEEEecCC--cEEEEEc
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFT-----ESPDPS---LSSISCADN--QVHLLKM 423 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~-----~s~~~~---~l~~~~~d~--~i~i~d~ 423 (762)
..|+.+.-.|+ ..+.+-+.|+.+.+|++..+....... -.+.++. +.++++ .++.....+ .+++-|.
T Consensus 57 ~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 57 LFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred ceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 78888888887 578889999999999998765532221 1122222 222221 122111111 1222232
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCC--EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGG--LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
.....+....... ....+.+.+..+.. ++. ++++|.++|.+.+||+.++..+..++...+...+...|..+
T Consensus 134 g~~tqv~i~dd~~------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qp 207 (323)
T KOG0322|consen 134 GDTTQVQIADDSE------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQP 207 (323)
T ss_pred CccceeEccCchh------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCc
Confidence 2221222111111 11124555555433 222 46778899999999999986555554443333334445788
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
+.++.+.+.-..=++++ .+..+..|+++.......+....... .-.|..+..-||++.+|+++.|+.||
T Consensus 208 vlsldyas~~~rGisgg---------a~dkl~~~Sl~~s~gslq~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiR 276 (323)
T KOG0322|consen 208 VLSLDYASSCDRGISGG---------ADDKLVMYSLNHSTGSLQIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIR 276 (323)
T ss_pred ceeeeechhhcCCcCCC---------ccccceeeeeccccCcccccceEEec--CCCccceEEccCCcEEeecccCCcEE
Confidence 99999987655555555 55678888877542222221111111 34688899999999999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
||..++......+ .+|...|++++|+||..++|.++ |++|.+|++
T Consensus 277 Vyswrtl~pLAVL-----------kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 277 VYSWRTLNPLAVL-----------KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeccCCchhhh-----------hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999988877665 47999999999999999999999 999999986
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2e-18 Score=159.40 Aligned_cols=338 Identities=14% Similarity=0.171 Sum_probs=230.0
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-cc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WH 352 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h 352 (762)
++-+.+|.+.|+++.|+.++++|++|+.|..+++|+++..-. ...++++.... .|
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~------------------------~k~~KPI~~~~~~H 104 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV------------------------RKTPKPIGVMEHPH 104 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh------------------------hcCCCCceeccCcc
Confidence 355678999999999999999999999999999999743211 11123344433 35
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEEecCCcEEEEEcCCce-E
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSISCADNQVHLLKMPSME-I 428 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~-~ 428 (762)
...|.+++|....+.+++|+.+++|.+.|+++.+.+.+..+.. .|+.+..+|-.+.+++.+.++.|.+||.+... .
T Consensus 105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred ccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 6899999999999999999999999999999999887777665 89999999999999999999999999998643 2
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
+..+-... .......+.|+|. ..+|++.+..+-+-+||.+......--.....+. ......-..+.|+
T Consensus 185 ~~~~~~AN--------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L---~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 185 ISLVLPAN--------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL---PQENTEWMGSLWS 253 (609)
T ss_pred CceeeecC--------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC---cccchhhhheeeC
Confidence 22221111 1146678899995 4577888888889999997653211100000000 0002223677899
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC------CCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR------DAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~------~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
|.|..+.+.- ....-.+||+-+.++.. ++ ..|. ...+.+++|-.|. .+++|+.+=.|++
T Consensus 254 ~~G~Q~msiR---------R~~~P~~~D~~S~R~~V-~k----~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~ 318 (609)
T KOG4227|consen 254 PSGNQFMSIR---------RGKCPLYFDFISQRCFV-LK----SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHI 318 (609)
T ss_pred CCCCeehhhh---------ccCCCEEeeeeccccee-Ee----ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEE
Confidence 9999888765 33445667777654432 21 1121 2356677887654 4888988888999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSS 661 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg 661 (762)
|.+.......-+ +.+ -.|..-+ -..|.| .+.+.+|+||.+-++.+.|+|..
T Consensus 319 WklP~~~ds~G~------------------~~I--G~~~~~~----~~~~~i-----~~~~~VLrGHRSv~NQVRF~~H~ 369 (609)
T KOG4227|consen 319 WKLPRANDSYGF------------------TQI--GHDEEEM----PSEIFI-----EKELTVLRGHRSVPNQVRFSQHN 369 (609)
T ss_pred EecCCCccccCc------------------ccc--CcchhhC----chhhee-----cceeEEEecccccccceeecCCc
Confidence 988532211110 000 0000000 011111 34566889999999999999999
Q ss_pred CEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 662 EYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 662 ~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.+|++.+-.+. +++|. ..++.|.+.++++
T Consensus 370 ~~l~SSGVE~~--~KlWS--~~r~P~~~D~~~E 398 (609)
T KOG4227|consen 370 NLLVSSGVENS--FKLWS--DHRLPWSYDLPFE 398 (609)
T ss_pred ceEeccchhhh--eeccc--cccCCcccCCccc
Confidence 99999999988 99995 3445577777666
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.4e-19 Score=182.68 Aligned_cols=284 Identities=18% Similarity=0.185 Sum_probs=220.7
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCe
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGT 144 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~ 144 (762)
+.+.||.+.|.| ++|...|+++++|+ |..|+||..+++.++..+.||.+.|+.++.+.+. .+++++|.|..
T Consensus 184 krLlgH~naVyc-a~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-------~~iaaaS~D~v 255 (1113)
T KOG0644|consen 184 KRLLGHRNAVYC-AIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-------TMIAAASNDKV 255 (1113)
T ss_pred HHHHhhhhheee-eeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-------hhhhhcccCce
Confidence 457999999998 99999999999999 5999999999999999999999999999999998 68889999999
Q ss_pred EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 145 IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
|++|.+.++..+.
T Consensus 256 IrvWrl~~~~pvs------------------------------------------------------------------- 268 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVS------------------------------------------------------------------- 268 (1113)
T ss_pred EEEEecCCCchHH-------------------------------------------------------------------
Confidence 9999998877654
Q ss_pred cccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 225 RLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
.+.+|++.|++++|+|-. +++.||++++||..- .................+.++.|..++..+++++.|+.
T Consensus 269 -----vLrghtgavtaiafsP~~---sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 269 -----VLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred -----HHhccccceeeeccCccc---cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 445677888888888865 556788999998871 11100111222233467788888888999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLD 383 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~ 383 (762)
-..|... .+.++...+.-+.++.|- .+.+++-.+-.+++|++.
T Consensus 340 a~n~e~~------------------------------------~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 340 ARNHEFE------------------------------------QLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred cccchhh------------------------------------HhhhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 8888752 233344444344443332 456667777889999999
Q ss_pred CCcee-ccCCCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEE
Q 040987 384 TGKKK-FLPRIGSPLLYFTESPDPSLS-SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV 461 (762)
Q Consensus 384 ~~~~~-~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 461 (762)
+|... .+..|...+..+.++|-+..+ ..++.||...|||+-.|.+++...... +.+....||+||..+
T Consensus 384 ~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh----------~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH----------GKLVDGKFSQDGTSI 453 (1113)
T ss_pred cchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc----------ceeeccccCCCCceE
Confidence 99875 467788899999999966554 567789999999999888777654222 677888999999999
Q ss_pred EEeecCceEEEEEcCCCC
Q 040987 462 ALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~ 479 (762)
+....-|.++|.....++
T Consensus 454 ~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecCCCCCceEEeccCCCc
Confidence 988888999988775554
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=1.7e-17 Score=147.24 Aligned_cols=276 Identities=15% Similarity=0.203 Sum_probs=192.7
Q ss_pred cCCeEEEEecCCCce----eccCCCCCCeEEEEeCCCCCeEEEEecC--------CcEEEEEcCCceEEEEEccCCCCCC
Q 040987 373 KEGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDPSLSSISCAD--------NQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
.|++|.+.+++.+.- ..+..+.+.|..++-+|-.+.+++.... ..+.||.+..............-..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 457787777665443 2456677899999999966655543322 2467888764211100000000000
Q ss_pred CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEec--CCCeEEEEe
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVD 517 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~ 517 (762)
....+-+.+.++.|.|++..+++-. |..|.+|++..+.. ...+...... .+....++-+|+| ||+.+++.
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~-----e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA-----EMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc-----cccceecccccCCCCccceEEEe-
Confidence 1112236889999999999988875 77899999988776 3333322111 1255678889998 78888888
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccccccccCC
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
.++++..||+++..+...+. .+| ...|..+.|+|+.+ +|++++.||.|+|||.+..+....
T Consensus 191 ---------~d~tl~~~D~RT~~~~~sI~----dAH-gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~---- 252 (370)
T KOG1007|consen 191 ---------SDSTLQFWDLRTMKKNNSIE----DAH-GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ---- 252 (370)
T ss_pred ---------CCCcEEEEEccchhhhcchh----hhh-cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc----
Confidence 67899999999988877764 577 78999999999865 588999999999999987654332
Q ss_pred ceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCC-----------------------------eEEEEe
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRN-----------------------------VLVAVI 645 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~-----------------------------~~~~~l 645 (762)
...+|...|.++.|.|.- ++|.+|+ |..|.+|...+- .++.++
T Consensus 253 ------el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 253 ------ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred ------ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 246899999999999954 4566666 999999975321 124466
Q ss_pred ccccCceeEEEEeC-CCCEEEEEEcCCCCeEEEEECC
Q 040987 646 GETLTPIMNMSFVG-SSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 646 ~~~~~~v~~~~~s~-dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
..|.+.|++++||. |.=.+|+-+.||. +.|=.+.
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGR--viIs~V~ 361 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGR--VIISSVP 361 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCce--EEeecCC
Confidence 77999999999998 5556778899997 7765543
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=9.9e-18 Score=155.27 Aligned_cols=246 Identities=13% Similarity=0.178 Sum_probs=188.2
Q ss_pred CCCEEEEE----eCCeEEEEEcc-CchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecc
Q 040987 246 SGKYFGIR----KQRKLLIWKVP-DVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATN 319 (762)
Q Consensus 246 dg~~la~~----~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~ 319 (762)
+.++||.. ..|...+.-+. +|+.. .-.....+|.++|..++|+| +...+|+|+.|.+|.||.+..+....
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d--~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-- 118 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMD--ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-- 118 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccC--CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc--
Confidence 45677632 23344444332 23222 22356679999999999999 67789999999999999986553322
Q ss_pred cccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceeccCCCCCCeE
Q 040987 320 DNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLL 398 (762)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~ 398 (762)
+..+++..+.+|...|--+.|+|.. +.|++++.|.+|.+|++.+|+......|+..|.
T Consensus 119 ---------------------~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~ 177 (472)
T KOG0303|consen 119 ---------------------DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY 177 (472)
T ss_pred ---------------------CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE
Confidence 1225678999999999999999964 678899999999999999999876667999999
Q ss_pred EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCceEEEEEc
Q 040987 399 YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENYCIHFYSL 475 (762)
Q Consensus 399 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~ 475 (762)
++.|+.||.++++.+.|..|+|||.++++.+..-.+|.. ..-..+.|-.++..+-+|. .+.++-+||.
T Consensus 178 S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG---------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 178 SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG---------AKPARAIFLASGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC---------CCcceeEEeccCceeeeccccccccceeccCc
Confidence 999999999999999999999999999999988877764 3446678888888554443 4678999998
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
.+-+....+..... ...|.---+.+|.+.+..++. +|+.|+.|.+.....
T Consensus 249 ~nl~eP~~~~elDt--------SnGvl~PFyD~dt~ivYl~GK--------GD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 249 NNLEEPIALQELDT--------SNGVLLPFYDPDTSIVYLCGK--------GDSSIRYFEITNEPP 298 (472)
T ss_pred ccccCcceeEEecc--------CCceEEeeecCCCCEEEEEec--------CCcceEEEEecCCCc
Confidence 76655433333222 455666677899888888774 899999999987653
No 183
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.9e-16 Score=159.19 Aligned_cols=536 Identities=14% Similarity=0.129 Sum_probs=318.1
Q ss_pred CceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCccc------ceeeeEEeeecCCeEEEEeCC
Q 040987 78 PPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPAT------KILSYCWTASLDGTIKYWDFS 151 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~------~l~~~l~s~s~d~~i~vWd~~ 151 (762)
++.|+|.| +||+|+...|.|.|..+-+.++.+.-|...|+.+.|.|-.-+-. .- -.||++...|.|.+||..
T Consensus 20 A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~-lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ-LLIASADISGRIILVDFV 97 (1062)
T ss_pred ccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccc-eeEEeccccCcEEEEEeh
Confidence 58999988 99999999999999999999999999999999999988531100 11 257888889999999999
Q ss_pred CcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccccee
Q 040987 152 VPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGV 230 (762)
Q Consensus 152 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 230 (762)
.+..+..+..+. ++..+ +|.....+.+. +++.+ .....+.+||..+|+.. -.
T Consensus 98 ~~s~~~~l~~~~~~~qdl-----~W~~~rd~Srd--~LlaI-------------------h~ss~lvLwntdtG~k~-Wk 150 (1062)
T KOG1912|consen 98 LASVINWLSHSNDSVQDL-----CWVPARDDSRD--VLLAI-------------------HGSSTLVLWNTDTGEKF-WK 150 (1062)
T ss_pred hhhhhhhhcCCCcchhhe-----eeeeccCcchh--eeEEe-------------------cCCcEEEEEEccCCcee-ec
Confidence 998888887776 66555 33333222221 12222 34568999999999988 23
Q ss_pred eeccCCCceEEEECC-CCCEEE-EEeCCeEEEEEccCchhh--hheeeeeeeccCc------------------------
Q 040987 231 TLAEMKEPQVITISS-SGKYFG-IRKQRKLLIWKVPDVEAE--RVVMRKITLHHTK------------------------ 282 (762)
Q Consensus 231 ~~~~~~~v~~~~~sp-dg~~la-~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~------------------------ 282 (762)
.........|+.+.| |.+.+. .+..|.+.+-+.-..... .....++...|.+
T Consensus 151 ~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi 230 (1062)
T KOG1912|consen 151 YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI 230 (1062)
T ss_pred cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHH
Confidence 333344566788888 445554 566777766654322111 0011122222222
Q ss_pred -CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 283 -KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 283 -~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
..-.++|+|.-+.++.......+.++|++-...+ .+..-..+.+.-+.+
T Consensus 231 ty~a~faf~p~~rn~lfi~~prellv~dle~~~~l------------------------------~vvpier~~akfv~v 280 (1062)
T KOG1912|consen 231 TYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL------------------------------AVVPIERGGAKFVDV 280 (1062)
T ss_pred HHHHhhhcChhhhceEEEEeccceEEEcchhhcee------------------------------EEEEeccCCcceeEe
Confidence 0112567886554554556777999998665433 233334445566777
Q ss_pred ecCC--CEEEEEecCCeEEEEecCCCceeccC-------CCCCCeEEE-----------EeCCC-CCeEEEEecCCcEEE
Q 040987 362 SSDG--AYLYSGGKEGVLVVWQLDTGKKKFLP-------RIGSPLLYF-----------TESPD-PSLSSISCADNQVHL 420 (762)
Q Consensus 362 s~~g--~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~v~~~-----------~~s~~-~~~l~~~~~d~~i~i 420 (762)
-|++ ..|++.-.||.+.+|--+........ .....+.++ +..|. ...++.--.+|...+
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~ 360 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTF 360 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHH
Confidence 7765 45788888999999965442111100 111112221 22232 333444445677788
Q ss_pred EEcCCceEEEEEccCCC---------------------CCCCCCcccCceeeEEE-----------eCCCC-------EE
Q 040987 421 LKMPSMEIIRSISGIKL---------------------PCPLPEEYKGLCRDIAF-----------NHDGG-------LV 461 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~-----------s~~~~-------~l 461 (762)
|.+.+++.-........ .......|.....+... .|.++ ++
T Consensus 361 w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLv 440 (1062)
T KOG1912|consen 361 WQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLV 440 (1062)
T ss_pred HhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeE
Confidence 87775432211110000 00000011111121111 12222 57
Q ss_pred EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 462 ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
|+|+..|+|.++|+.++..-..+..+ ...|.++.|....+++-.+.........+..+.+.+-|+++|..
T Consensus 441 AvGT~sGTV~vvdvst~~v~~~fsvh----------t~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls 510 (1062)
T KOG1912|consen 441 AVGTNSGTVDVVDVSTNAVAASFSVH----------TSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS 510 (1062)
T ss_pred EeecCCceEEEEEecchhhhhhhccc----------ccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc
Confidence 89999999999999988765555433 67799999988777665554332222223556788999998865
Q ss_pred eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccccc-------CCceeeeee-----------
Q 040987 542 EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQ-------SSGWSCHAV----------- 603 (762)
Q Consensus 542 ~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~----------- 603 (762)
...-.. ..+. ..+|+.+..|..++||+..-.+.-+.+||+++........ .-.|..+..
T Consensus 511 k~fR~l--~~~d-espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q 587 (1062)
T KOG1912|consen 511 KRFRGL--QKPD-ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQ 587 (1062)
T ss_pred cccccC--CCCC-cCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhh
Confidence 332110 1234 7789999999999999999999999999997655433211 112221000
Q ss_pred ---------cccCCCCeE---------------------------EEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe-
Q 040987 604 ---------GSYKKKAMT---------------------------AAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI- 645 (762)
Q Consensus 604 ---------~~~~~~~i~---------------------------~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l- 645 (762)
....+..+. .|+| .+..++.|. +|.+.+||+...+-....
T Consensus 588 ~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d 665 (1062)
T KOG1912|consen 588 SSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRD 665 (1062)
T ss_pred hhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccC
Confidence 000011111 1223 345788898 999999997754333322
Q ss_pred -ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEE
Q 040987 646 -GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 646 -~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
..|........+-|....++.--.|+ +-+||.+.-.++.++.
T Consensus 666 ~p~~ra~~l~~~~ipG~~~~lvl~~d~---~~lwdtk~~~lV~sia 708 (1062)
T KOG1912|consen 666 SPDPRAHSLTFPQIPGDHTTLVLELDW---LPLWDTKADTLVLSIA 708 (1062)
T ss_pred CCCchhhheecccCCCCceEEEEecCc---ceecccccceeeeeec
Confidence 22333344444555333455556676 8899988888888773
No 184
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.79 E-value=1.2e-14 Score=138.31 Aligned_cols=506 Identities=12% Similarity=0.087 Sum_probs=286.7
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEE-----e--C-CEEEEEEcccceEEe-eecCCccceeE-EEE
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVC-----T--S-NTVSIFSTSTGLQIS-SLEGHKAPVTT-VIV 122 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~-----~--~-~~i~iwd~~~~~~~~-~l~~h~~~V~~-v~~ 122 (762)
..++.+++.+++.+.+..|-+-|.. ..|+|||+.+|.. + + ..+.+.+.+.|+.-+ ++-| ..-+. .-|
T Consensus 59 DdlWe~slk~g~~~ritS~lGVvnn-~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfG--r~fT~VaG~ 135 (668)
T COG4946 59 DDLWEYSLKDGKPLRITSGLGVVNN-PKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFG--RRFTRVAGW 135 (668)
T ss_pred hHHHHhhhccCCeeEEecccceecc-ccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEec--cccceeecc
Confidence 3444455668888999999999998 9999999999983 2 2 689999999887543 2223 33333 459
Q ss_pred eCCCCcccceeeeEEeeecCCeEEEE----eCC-CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeecc
Q 040987 123 VPASTPATKILSYCWTASLDGTIKYW----DFS-VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTR 197 (762)
Q Consensus 123 s~~~~~~~~l~~~l~s~s~d~~i~vW----d~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (762)
+||| ..+++...-.-..-| .+. +|-....+.. .+.+.+.+. |+ +.++. .+.-
T Consensus 136 ~~dg-------~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Lnl-Gpathiv~~---------dg-----~ivig-Rnty 192 (668)
T COG4946 136 IPDG-------EIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNL-GPATHIVIK---------DG-----IIVIG-RNTY 192 (668)
T ss_pred CCCC-------CEEEEeccCCCcccceeeeEEccCCceeeeccC-CceeeEEEe---------CC-----EEEEc-cCcc
Confidence 9999 455555432222212 111 1110111110 122222210 00 00000 0000
Q ss_pred ccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC--CeEEEEEccCchhhhheeee
Q 040987 198 ETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ--RKLLIWKVPDVEAERVVMRK 275 (762)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--~~i~iwd~~~~~~~~~~~~~ 275 (762)
.+-+|.. +-|+..|.|.+ -..+.........-.+.|.+..+-.+.-++.+.-+ |.+.--|+......
T Consensus 193 dLP~WK~---YkGGtrGklWi--s~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlr------ 261 (668)
T COG4946 193 DLPHWKG---YKGGTRGKLWI--SSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLR------ 261 (668)
T ss_pred cCccccc---ccCCccceEEE--EecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhh------
Confidence 0000110 44566665433 33333222444555666666666555555555544 44555555554432
Q ss_pred eeeccCc--CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccc-----cccc----------cccccC-----
Q 040987 276 ITLHHTK--KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKM-----NLNL----------MNNEEE----- 333 (762)
Q Consensus 276 ~~~~~~~--~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-----~~~~----------~~~~~~----- 333 (762)
.|++ .-.+-..+.||+.++.. ..|.|.+||..+.+.-+..-+.. .... |+....
T Consensus 262 ---rHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~ 337 (668)
T COG4946 262 ---RHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIAL 337 (668)
T ss_pred ---hcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEE
Confidence 2321 22233456689887764 56789999987664322111100 0000 000000
Q ss_pred --CCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC-eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEE
Q 040987 334 --RPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG-VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSS 410 (762)
Q Consensus 334 --~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 410 (762)
+........+.--..--+|...|.-..+..+++-++.|..|| .+-++|.++++.......-+.|.++..+++|+.++
T Consensus 338 VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 338 VSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred EecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEE
Confidence 011111112222222335777788888888888899999998 89999999999887777778999999999999999
Q ss_pred EEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc----eEEEEEcCCCCceeeEEe
Q 040987 411 ISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY----CIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 411 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~ 486 (762)
++.....+.++|++++.....-+... +.|..++|+|+++++|.+--+| .|+++|+.+++.......
T Consensus 418 vaNdr~el~vididngnv~~idkS~~----------~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 418 VANDRFELWVIDIDNGNVRLIDKSEY----------GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred EEcCceEEEEEEecCCCeeEeccccc----------ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC
Confidence 99888899999999987655444333 7899999999999999987664 689999988765433221
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE------------------
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI------------------ 548 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------------------ 548 (762)
...-.+-+|.||+++|..-+.+.-+.. .|..+.=+....-..++.....
T Consensus 488 -----------ta~DfsPaFD~d~ryLYfLs~RsLdPs--~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea 554 (668)
T COG4946 488 -----------TAYDFSPAFDPDGRYLYFLSARSLDPS--NDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEA 554 (668)
T ss_pred -----------cccccCcccCCCCcEEEEEeccccCCC--CCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccc
Confidence 222345688999998877764322211 2333322222211111100000
Q ss_pred -------------eecCCCCCceEEEEEcCCCCeEEE--------------EeCCCcEEEEEcccccccccccCCceeee
Q 040987 549 -------------VYEPHRDAGISAVAFHPNRRAAVS--------------SSYGGDFKVWICNDELQQKDLQSSGWSCH 601 (762)
Q Consensus 549 -------------~~~~h~~~~v~~~~~spd~~~l~~--------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 601 (762)
.+.-. .+.-.+++=-.+|+.+.. +-.-|.+.+||+++.+....
T Consensus 555 ~e~dle~ie~r~eP~pVe-e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~--------- 624 (668)
T COG4946 555 GEVDLEGIEDRVEPFPVE-EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY--------- 624 (668)
T ss_pred cceehhhhcccccccccC-ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH---------
Confidence 00000 111122222222322211 11235666777766554332
Q ss_pred eecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCC
Q 040987 602 AVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDR 638 (762)
Q Consensus 602 ~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~ 638 (762)
...++++..|+||+.+..-.|+.+++++++.
T Consensus 625 ------k~nvss~rlS~D~s~ilvk~d~kl~~f~vek 655 (668)
T COG4946 625 ------KDNVSSFRLSSDGSKILVKLDGKLRLFDVEK 655 (668)
T ss_pred ------hcccceEEEcCCCCEEEEEeCCeEEEEeccc
Confidence 4678999999999999986699999999986
No 185
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=7.5e-19 Score=184.91 Aligned_cols=249 Identities=14% Similarity=0.192 Sum_probs=191.9
Q ss_pred cceeEEEEecCCCE----EEEEecCCeEEEEecCCC---ce----eccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEE
Q 040987 354 SEVSVLIFSSDGAY----LYSGGKEGVLVVWQLDTG---KK----KFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLL 421 (762)
Q Consensus 354 ~~v~~~~~s~~g~~----l~s~~~dg~i~~wd~~~~---~~----~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~ 421 (762)
...+.++|.+.|.. |+.|..||.|.+||...- .. .....|.+.|..+.|++... +|++|+.+|.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45688999887765 888889999999998762 22 24667899999999999765 99999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
|+...+.-....... ....|.+++|+.. .+.|++++.+|.+.|||++..+.+-.+..... ...
T Consensus 145 Dlnn~~tP~~~~~~~--------~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~--------~~~ 208 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQA--------PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG--------RMH 208 (1049)
T ss_pred ccCCcCCCCCCCCCC--------CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC--------ccc
Confidence 998743333222111 1268899999985 45678888999999999998877666554332 345
Q ss_pred EEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC-CeEEEEeCCCc
Q 040987 501 VTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR-RAAVSSSYGGD 578 (762)
Q Consensus 501 v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~ 578 (762)
+..++|+|+.. .|++++.+ ...-.|.+||++........ +++| ...|.++.|++.+ ++|++++.|+.
T Consensus 209 ~S~l~WhP~~aTql~~As~d------d~~PviqlWDlR~assP~k~----~~~H-~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGD------DSAPVIQLWDLRFASSPLKI----LEGH-QRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred eeeeeeCCCCceeeeeecCC------CCCceeEeecccccCCchhh----hccc-ccceeeeccCCCCchhhhcccCCCC
Confidence 88999999864 45555421 14568999998865543332 3688 9999999999965 89999999999
Q ss_pred EEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc-CCeEEEEeCCCCe
Q 040987 579 FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA-ETVITLWDPDRNV 640 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~-d~~i~iwd~~~~~ 640 (762)
|.+|+.++++.+..++ ....++..+.|+|... .+++++ ||.|.||.+.++.
T Consensus 278 ii~wN~~tgEvl~~~p-----------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELP-----------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEeeecC-----------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999887774 3568899999999776 667777 9999999998653
No 186
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.79 E-value=5.5e-16 Score=155.63 Aligned_cols=321 Identities=16% Similarity=0.154 Sum_probs=203.4
Q ss_pred CEEEEEe--CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc
Q 040987 86 KRLLVCT--SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF 163 (762)
Q Consensus 86 ~~la~~~--~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~ 163 (762)
+++++.. ++.|.|.|.++.+.+.++......-..+.|+||| +++++++.|+.|.++|+.+++.+++++...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-------r~~yv~~rdg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-------RYLYVANRDGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-------SEEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-------CEEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence 4555554 5999999999999999998655544557899999 678888999999999999999888876432
Q ss_pred ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEE
Q 040987 164 SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243 (762)
Q Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 243 (762)
....+++
T Consensus 79 -------------------------------------------------------------------------~~~~i~~ 85 (369)
T PF02239_consen 79 -------------------------------------------------------------------------NPRGIAV 85 (369)
T ss_dssp -------------------------------------------------------------------------EEEEEEE
T ss_pred -------------------------------------------------------------------------CcceEEE
Confidence 2356789
Q ss_pred CCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeec------cCcCeEEEEEcCCCcEEEEe-ecCCeEEEEeccCCc
Q 040987 244 SSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLH------HTKKLTVLAFHPTQRIVAAG-DVTGRILIWRGFGDR 314 (762)
Q Consensus 244 spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~-~~dg~v~vw~~~~~~ 314 (762)
|+||++++++ ..+.+.++|..+.+.. +.+..+ ....+.++..+|....++.. -..+.|.+.|.....
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v----~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPV----KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EE----EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred cCCCCEEEEEecCCCceeEeccccccce----eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9999999855 5899999999998754 222211 23467888889988855544 445888888875543
Q ss_pred eeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecCCCceeccC--
Q 040987 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG-GKEGVLVVWQLDTGKKKFLP-- 391 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~i~~wd~~~~~~~~~~-- 391 (762)
.+. ..............|+|++++++.+ ..+..|.++|.++++.....
T Consensus 162 ~~~-----------------------------~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 162 NLK-----------------------------VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp CEE-----------------------------EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred ccc-----------------------------eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 221 1122233446678999999988765 45578999999988764322
Q ss_pred ---CCCCCeEEEE-------e--CCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 392 ---RIGSPLLYFT-------E--SPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 392 ---~~~~~v~~~~-------~--s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.++.+...+- | ...+...+..-....+.+||..+.+.++++.... +. .-+..+|+++
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G----------~g-lFi~thP~s~ 281 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG----------GG-LFIKTHPDSR 281 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS----------SS---EE--TT-S
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC----------Cc-ceeecCCCCc
Confidence 2223333221 2 1223333233334466678888899999887654 23 6678899999
Q ss_pred EEEEe----ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 460 LVALR----AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 460 ~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
++.+. ...+.|.++|..+.+....+.... ...+..+.|++||+.+..+..+ .++.|.+||
T Consensus 282 ~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~---------~~~~~h~ef~~dG~~v~vS~~~-------~~~~i~v~D 345 (369)
T PF02239_consen 282 YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP---------GKRVVHMEFNPDGKEVWVSVWD-------GNGAIVVYD 345 (369)
T ss_dssp EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH---------T--EEEEEE-TTSSEEEEEEE---------TTEEEEEE
T ss_pred cEEeeccCCCCCceEEEEECcCcceeEEEeccC---------CCcEeccEECCCCCEEEEEEec-------CCCEEEEEE
Confidence 99988 445899999999875544432211 2248899999999988887753 445899999
Q ss_pred ecCCCceeEEE
Q 040987 536 SGTQNKEFTLS 546 (762)
Q Consensus 536 ~~~~~~~~~~~ 546 (762)
..+.+....+.
T Consensus 346 ~~Tl~~~~~i~ 356 (369)
T PF02239_consen 346 AKTLKEKKRIP 356 (369)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCcEEEEEEE
Confidence 99998776664
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1.8e-16 Score=152.65 Aligned_cols=263 Identities=13% Similarity=0.202 Sum_probs=190.5
Q ss_pred ccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEE-EEEcC-------CCcEEEEeecCCe
Q 040987 233 AEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTV-LAFHP-------TQRIVAAGDVTGR 304 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp-------~~~~l~~~~~dg~ 304 (762)
.|...+.++.|+.....+.+++|..+.+|.-.+.+.. ....-...-+.. +-.-+ ....++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-----~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-----EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-----hhhhCCcccCCccccccccccCCCCCcceEEEEcCCce
Confidence 4556677999999998888888887777754433322 111111111111 11111 2236788889999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
+.+.+-.. +.......|.+.+.+-.|+|||.-|++++.||.|++|.-..
T Consensus 87 f~il~k~~-------------------------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG 135 (737)
T KOG1524|consen 87 FVILNKSA-------------------------------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG 135 (737)
T ss_pred EEEecccc-------------------------------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc
Confidence 99887432 23356778999999999999999999999999999998655
Q ss_pred CceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 385 GKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
.-...+.....+|.|++|.|+.+.++.+ ..+.+.|=-+.....+-..+.|. +-|.++.|++....+++|
T Consensus 136 MLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHD----------GiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 136 MLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHD----------GLVLSLSWSTQSNIIASG 204 (737)
T ss_pred hHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccC----------cEEEEeecCccccceeec
Confidence 4444566778899999999999887765 56677776666555555666665 899999999999999999
Q ss_pred ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 465 AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
++|-..++||......... . .|..+|++++|.|| +.++.++. +++++
T Consensus 205 GED~kfKvWD~~G~~Lf~S-----~------~~ey~ITSva~npd-~~~~v~S~----------nt~R~----------- 251 (737)
T KOG1524|consen 205 GEDFRFKIWDAQGANLFTS-----A------AEEYAITSVAFNPE-KDYLLWSY----------NTARF----------- 251 (737)
T ss_pred CCceeEEeecccCcccccC-----C------hhccceeeeeeccc-cceeeeee----------eeeee-----------
Confidence 9999999999764322111 1 12778999999999 77777753 34441
Q ss_pred EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 545 LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 545 ~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
. .+. .+.|..++||+||..++.|+..|.+.+
T Consensus 252 -~----~p~-~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 -S----SPR-VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -c----CCC-ccceEEEEEcCCCceeeccccCceEEE
Confidence 1 233 778999999999999999998887654
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=8.1e-16 Score=141.92 Aligned_cols=331 Identities=11% Similarity=0.126 Sum_probs=220.8
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
..+..+.|..+...|..|+.|| .++|+......+ .......-.|..+-|
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~------------------------------~~~~~~~~~IvEmLF 54 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC------------------------------FSKDTEGVSIVEMLF 54 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHh------------------------------hcccCCCeEEEEeec
Confidence 4566777999999999999998 678876443211 111112234566667
Q ss_pred ecCCCEEEEEecC--CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 362 SSDGAYLYSGGKE--GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 362 s~~g~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+.. +++..+.+ +.+++.+.+.+..+.....+.+|.++.++. ++|++.-. ..|+|||+++.++++++......
T Consensus 55 SSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n- 128 (391)
T KOG2110|consen 55 SSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPN- 128 (391)
T ss_pred ccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCC-
Confidence 654 55555543 459999999888877777888999999865 45665544 45999999999999988754211
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
...+.++.+++.+.+++.-+ ..|.|.+||..+-+....+..+ .+.+.+++|+++|.+||+++
T Consensus 129 ------~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH----------~~~lAalafs~~G~llATAS 192 (391)
T KOG2110|consen 129 ------PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH----------KGPLAALAFSPDGTLLATAS 192 (391)
T ss_pred ------ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec----------CCceeEEEECCCCCEEEEec
Confidence 14566777777777998764 4589999999988877776643 78899999999999999999
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
. ....||++.+.+++..+++.. |-....|.+++|+||+++|++.+..++|.+|.+.............
T Consensus 193 e--------KGTVIRVf~v~~G~kl~eFRR----G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~ 260 (391)
T KOG2110|consen 193 E--------KGTVIRVFSVPEGQKLYEFRR----GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTA 260 (391)
T ss_pred c--------CceEEEEEEcCCccEeeeeeC----CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCC
Confidence 4 455789999999999998864 3325578999999999999999999999999997655222111000
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEEEEcCCCCe
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVATSWGSKPQ 674 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s~~~d~~~~ 674 (762)
|. -.+.+-.+.+ ++. .+.-.+||....---..+.... ..+..+.=.+...++..++.||.
T Consensus 261 ~~--------------~~~~~~sk~~-~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~-- 323 (391)
T KOG2110|consen 261 GT--------------SWFGKVSKAA-TSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGH-- 323 (391)
T ss_pred CC--------------cccchhhhhh-hhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCe--
Confidence 00 0000000001 111 1122234444322222222111 12333333357889999999998
Q ss_pred EEEEECC--CCceeeEEEEeec
Q 040987 675 LSVWNMS--KLSISWSYLLHVE 694 (762)
Q Consensus 675 v~vwd~~--~~~~~~~~~~~~~ 694 (762)
++.|.+. +|...+.+..+.-
T Consensus 324 ~y~y~l~~~~gGec~lik~h~~ 345 (391)
T KOG2110|consen 324 LYSYRLPPKEGGECALIKRHFL 345 (391)
T ss_pred EEEEEcCCCCCceeEEEEeecc
Confidence 9998765 4667776665543
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.6e-16 Score=134.79 Aligned_cols=250 Identities=14% Similarity=0.183 Sum_probs=183.9
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.|.+-+++|.+++|++|..+|.|.+..+.+-..-.. ..+....+...++|.++|+.++|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa--------------------~~~gk~~iv~eqahdgpiy~~~f~ 71 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA--------------------EPPGKLKIVPEQAHDGPIYYLAFH 71 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc--------------------CCCCCcceeeccccCCCeeeeeee
Confidence 466778999999999999999999999854311100 001112345568999999999998
Q ss_pred cCCCEEEEEecCCeEEEEecCCCce---------eccCCC-----CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKK---------KFLPRI-----GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~---------~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
. .+|++++. |.|+-|..+.... ...+.+ -..|.++...|..+.++.++.|+.++-||+++|+.
T Consensus 72 d--~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i 148 (325)
T KOG0649|consen 72 D--DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI 148 (325)
T ss_pred h--hheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE
Confidence 3 46777764 9999997654332 111111 13588899999888888888999999999999999
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
.+++++|. ..+.+++--.....+++|++||++++||.++++.+..+...........+....|.+++-
T Consensus 149 ~r~~rGHt----------DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-- 216 (325)
T KOG0649|consen 149 QREYRGHT----------DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-- 216 (325)
T ss_pred EEEEcCCc----------ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--
Confidence 99999998 788888885555679999999999999999999888776543322111112344555554
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
+..+|++|+ ...+.+|+++..+....++. ...+..+.|-. +.+++++..+.+.-|.+..
T Consensus 217 ~edWlvCGg----------Gp~lslwhLrsse~t~vfpi-------pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 217 NEDWLVCGG----------GPKLSLWHLRSSESTCVFPI-------PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cCceEEecC----------CCceeEEeccCCCceEEEec-------ccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 566888884 56899999999988777754 55678888864 4778888778899998854
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=5.5e-18 Score=164.53 Aligned_cols=269 Identities=17% Similarity=0.255 Sum_probs=196.1
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+..|.+.|+.++|.|-...|++++.||.+.+|++.... .....+.+++.+|++|.+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~----------------------~s~~~~~epi~tfraH~g 345 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK----------------------KSAEKDVEPILTFRAHEG 345 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC----------------------CccccceeeeEEEecccC
Confidence 3566789999999999999999999999999999993311 011234467889999999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCc-------e----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-------K----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-------~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+|.|++..+++.++++|+.||+|+.|++.... . -.+.+|...+..+++|+....|++++.||+++.|+.
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 99999999999999999999999999654211 1 246778899999999999999999999999999998
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
....+ .++..... .+...++.+-... ++....+.....+++.+.+....+........+.......+..
T Consensus 426 ~~~~~-~~f~~~~e--------~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~ 494 (577)
T KOG0642|consen 426 TEESP-CTFGEPKE--------HGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK 494 (577)
T ss_pred CCcCc-cccCCccc--------cCCcceEeeccch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce
Confidence 86655 33333221 0233444443322 1111222333333333333322332222222222222456788
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
+..+|.+.+.+++. .++.|+++|..++..+... ..| ...++++++.|+|.+|++++.|+.+++|.
T Consensus 495 vVs~~~~~~~~~~h---------ed~~Ir~~dn~~~~~l~s~-----~a~-~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 495 VVSHPTADITFTAH---------EDRSIRFFDNKTGKILHSM-----VAH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred EEecCCCCeeEecc---------cCCceecccccccccchhe-----eec-cceecceeecCCCceEEeecCCceeehhh
Confidence 89999999999888 8999999999999887766 467 88999999999999999999999999999
Q ss_pred cccccccc
Q 040987 584 CNDELQQK 591 (762)
Q Consensus 584 ~~~~~~~~ 591 (762)
+.......
T Consensus 560 ld~k~~~~ 567 (577)
T KOG0642|consen 560 LDVKTCVL 567 (577)
T ss_pred ccchheee
Confidence 97655443
No 191
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.3e-15 Score=145.63 Aligned_cols=361 Identities=13% Similarity=0.106 Sum_probs=234.6
Q ss_pred EEEecCCCeEEEEecCC-cceeeeecC---cccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEE
Q 040987 46 FAVARSSGLCRTAEYPA-VNSKMIRGG---RSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVI 121 (762)
Q Consensus 46 ~a~~~~~g~i~~~~~~~-~~~~~~~~h---~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~ 121 (762)
+++-++ -.+.+|+... .......++ ...... .++|++|+++|.+.+..+.|++..++..+.+...- .+.++.
T Consensus 5 ~aVRsS-e~~~l~~~~~~~~~~~~f~~~~~~~~~~v-~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~ 80 (566)
T KOG2315|consen 5 YAVRSS-EGFYLFNGPGSKDAVTVFEQNKTSRPCNV-FAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLL 80 (566)
T ss_pred EEEEcc-ceeEEeccCCccccccccccCCCCCccee-EEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeee
Confidence 444333 3456777664 333334343 233443 78999999999999999999999988655555433 799999
Q ss_pred EeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCc
Q 040987 122 VVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTK 201 (762)
Q Consensus 122 ~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (762)
|||.| .||.|-- .-.+|.-.+.
T Consensus 81 fSP~g-------~yL~T~e---~~~i~~~~~~------------------------------------------------ 102 (566)
T KOG2315|consen 81 FSPKG-------NYLLTWE---PWAIYGPKNA------------------------------------------------ 102 (566)
T ss_pred ecccc-------ccccccc---ccccccCCCC------------------------------------------------
Confidence 99999 5655421 1111111100
Q ss_pred CCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccC
Q 040987 202 SHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 202 ~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
..-.+.+|+++++............. +++.|++|..+.|--..+.+.+|++.+... ....-|.
T Consensus 103 ----------~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~------~~~kl~~ 165 (566)
T KOG2315|consen 103 ----------SNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKT------IQHKLSV 165 (566)
T ss_pred ----------CCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccc------eeeeeec
Confidence 12355666666644443333333333 688999999887766678999999988553 2333467
Q ss_pred cCeEEEEEcCCC--cEEEE-----eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 282 KKLTVLAFHPTQ--RIVAA-----GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 282 ~~v~~~~~sp~~--~~l~~-----~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..|..+.+||.+ ..+|+ .+.-+.|+||........... ..+.+ ...
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-------------------------a~ksF--Fka 218 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-------------------------ANKSF--FKA 218 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-------------------------hhccc--ccc
Confidence 889999999974 35554 355678999987422111000 00111 111
Q ss_pred ceeEEEEecCCCEEE-EEe--c---------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEE--EecCCcEEE
Q 040987 355 EVSVLIFSSDGAYLY-SGG--K---------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI--SCADNQVHL 420 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~-s~~--~---------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~d~~i~i 420 (762)
.=..+.|++-|.-|+ .++ - ..++++.++.......-....++|.++.|+++++-+++ |-+-..+.|
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 223567777665332 222 1 24688888884444444555789999999999976554 556778999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
||++ +.++..+.. +.-..+-|+|.|++++.++.+ |.|.+||+.+.+.+..+..
T Consensus 299 fnlr-~~~v~df~e------------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----------- 354 (566)
T KOG2315|consen 299 FNLR-GKPVFDFPE------------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----------- 354 (566)
T ss_pred EcCC-CCEeEeCCC------------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----------
Confidence 9998 556655533 444789999999999988755 8999999999887776653
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
..-+-..|+|||++++++....... -|+.++||+.....
T Consensus 355 -~~tt~~eW~PdGe~flTATTaPRlr---vdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 355 -ANTTVFEWSPDGEYFLTATTAPRLR---VDNGIKIWHYTGSL 393 (566)
T ss_pred -CCceEEEEcCCCcEEEEEeccccEE---ecCCeEEEEecCce
Confidence 2356679999999999987532222 57889999997553
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=5.6e-17 Score=156.12 Aligned_cols=259 Identities=12% Similarity=0.126 Sum_probs=183.4
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEE-ecCCCceeccCCCCCCeEE-EEeC-------CCCCeEEEEecCCcEEEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVW-QLDTGKKKFLPRIGSPLLY-FTES-------PDPSLSSISCADNQVHLL 421 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w-d~~~~~~~~~~~~~~~v~~-~~~s-------~~~~~l~~~~~d~~i~i~ 421 (762)
.|...+.++.|+.+...+.+++ |..+.+| |+.+.........+.-+.. +..- .....++.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666778899987765555554 5555555 5544332211111111111 1111 123467888899999888
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+-. ++..+.+..|. +.+.+-.|+|||.-|+++++||.|++|.-... ....+... ...|
T Consensus 91 ~k~-~rVE~sv~AH~----------~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~----------~~~v 148 (737)
T KOG1524|consen 91 NKS-ARVERSISAHA----------AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQN----------EESI 148 (737)
T ss_pred ccc-chhhhhhhhhh----------hhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhhc----------Ccee
Confidence 754 66666677766 88899999999999999999999999986432 21111111 5679
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
.|++|.|+.+-++.+. .+.+.|=.+.....+.. ..+| .+-|.++.|++..+++++|++|-..+|
T Consensus 149 ~c~~W~p~S~~vl~c~----------g~h~~IKpL~~n~k~i~-----WkAH-DGiiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQ----------GGHISIKPLAANSKIIR-----WRAH-DGLVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred EEEEECCCCCceEEec----------CCeEEEeecccccceeE-----Eecc-CcEEEEeecCccccceeecCCceeEEe
Confidence 9999999988877773 35677766665554443 4689 999999999999999999999999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSS 661 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg 661 (762)
||-........ ..|..+|++++|.|| +.++.++-.++++= ....+.|..++||+||
T Consensus 213 WD~~G~~Lf~S------------~~~ey~ITSva~npd-~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 213 WDAQGANLFTS------------AAEEYAITSVAFNPE-KDYLLWSYNTARFS-----------SPRVGSIFNLSWSADG 268 (737)
T ss_pred ecccCcccccC------------Chhccceeeeeeccc-cceeeeeeeeeeec-----------CCCccceEEEEEcCCC
Confidence 99875544333 358899999999999 77887776666621 1245679999999999
Q ss_pred CEEEEEEcCCC
Q 040987 662 EYLVATSWGSK 672 (762)
Q Consensus 662 ~~l~s~~~d~~ 672 (762)
..++.+...|.
T Consensus 269 TQ~a~gt~~G~ 279 (737)
T KOG1524|consen 269 TQATCGTSTGQ 279 (737)
T ss_pred ceeeccccCce
Confidence 99999988875
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.3e-16 Score=147.40 Aligned_cols=309 Identities=12% Similarity=0.136 Sum_probs=216.8
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhh--hheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAE--RVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
....+|.+.|.++.||.++++||+| .|..+++|++...-.. +.++...-..|...|.|++|.-..++|.+|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4566799999999999999999965 7889999998743222 113333344677899999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
.+.|+++.+.+. +..-....+.|+.+..+|-.+.|++.+.++.|.+||.+..
T Consensus 130 I~HDiEt~qsi~----------------------------V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 130 IKHDIETKQSIY----------------------------VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred Eeeecccceeee----------------------------eecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 999998886553 1111223458999999999999999999999999999865
Q ss_pred c----eeccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 386 K----KKFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 386 ~----~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
. +......+.....+.|+|.. .+|++.+..+.+.+||.+... .+....+.... +. ....-.++.|+|.|.
T Consensus 182 ~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L---~~-~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 182 QNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL---PQ-ENTEWMGSLWSPSGN 257 (609)
T ss_pred CCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC---cc-cchhhhheeeCCCCC
Confidence 5 23344556678889999965 567778888999999987522 11111111100 00 002236788999999
Q ss_pred EEEEeecCceEEEEEcCCCCceeeEEeecccccCC-CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 460 LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPG-DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 460 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
.+++--....-.+||+.+..+.. ++ ..|.+. .-....+.+++|..|-. +++|+ .+-.|++|.+..
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V-~k---~D~N~~GY~N~~T~KS~~F~~D~~-v~tGS---------D~~~i~~WklP~ 323 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFV-LK---SDHNPNGYCNIKTIKSMTFIDDYT-VATGS---------DHWGIHIWKLPR 323 (609)
T ss_pred eehhhhccCCCEEeeeeccccee-Ee---ccCCCCcceeeeeeeeeeeeccee-eeccC---------cccceEEEecCC
Confidence 98887776667788887643321 11 111110 00133466777766544 88888 778999998753
Q ss_pred CCc------------------eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 539 QNK------------------EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 539 ~~~------------------~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
... ...-...++.|| ..-++.+.|+|...+|++.+-.+.++||.-
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CccccCccccCcchhhCchhheecceeEEEecc-cccccceeecCCcceEeccchhhheecccc
Confidence 211 111112356899 889999999999999999999999999964
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.7e-16 Score=149.20 Aligned_cols=200 Identities=19% Similarity=0.225 Sum_probs=149.8
Q ss_pred eeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 450 RDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
..++|+.+|..|++++.||++|+|+..+...+...... ...|.++.|+|||++|++.+ .+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~----------~~eV~DL~FS~dgk~lasig---------~d- 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH----------HAEVKDLDFSPDGKFLASIG---------AD- 207 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh----------cCccccceeCCCCcEEEEec---------CC-
Confidence 67999999999999999999999997665544333222 67799999999999999998 66
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC---C--eEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR---R--AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~---~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
..+||+.+++........ ... ......+.|+.|+ . .++....-+.|+.|++.....-..++. ...
T Consensus 208 ~~~VW~~~~g~~~a~~t~---~~k-~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~------~~~ 277 (398)
T KOG0771|consen 208 SARVWSVNTGAALARKTP---FSK-DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL------RKK 277 (398)
T ss_pred ceEEEEeccCchhhhcCC---ccc-chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch------hhh
Confidence 999999999966554431 122 4456778888877 2 333333446677777754433211110 001
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe-ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI-GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l-~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
......|++++.|+||+++|.|+ ||.|-|++..+.+++... +.|..-|+.+.|+||.+++++.+.|.. ..+..+.
T Consensus 278 ~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~--~~v~~l~ 354 (398)
T KOG0771|consen 278 IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE--AAVTKLA 354 (398)
T ss_pred hhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc--eeEEEEe
Confidence 11346899999999999999999 999999999998877755 568889999999999999999998887 6666543
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.2e-16 Score=164.11 Aligned_cols=304 Identities=11% Similarity=0.172 Sum_probs=205.0
Q ss_pred cCCCceEEEECCCCCEEEEEe-CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--CCcEEEEeecCCeEEEEec
Q 040987 234 EMKEPQVITISSSGKYFGIRK-QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--TQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~v~vw~~ 310 (762)
..+....+.|+|-...+++++ ...|+|||.+.++.. .-..........|+.+.+-. |..++++|+.||.|+||+-
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344678889999988888765 788999999988754 11111112345788888765 4568999999999999974
Q ss_pred cCCceeecccccccccccccccCCCCcccCCccccceeeec-------cccceeEEEEecCCCEEEEEecCCeEEEEecC
Q 040987 311 FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW-------HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLD 383 (762)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~ 383 (762)
..... ...+.+..+.+ -.+.=.-+.|.....+|+++|.-..|++||.+
T Consensus 1141 y~~~~-------------------------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1141 YADKW-------------------------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred ccccc-------------------------CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 32210 01111111111 11111335676665677777767899999999
Q ss_pred CCceeccC--CCCCCeEEEEeC-CCCCeEEEEecCCcEEEEEcCCc---eEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 384 TGKKKFLP--RIGSPLLYFTES-PDPSLSSISCADNQVHLLKMPSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 384 ~~~~~~~~--~~~~~v~~~~~s-~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
......-. +....++++.-+ +.|+.+++|..||.+++||.+.. ..+...+.|... ..|..+.+.+.
T Consensus 1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~--------~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV--------EPIVHLSLQRQ 1267 (1387)
T ss_pred cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc--------ccceeEEeecC
Confidence 87664322 233355555543 35799999999999999998763 245555555522 23888999886
Q ss_pred CCE-EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEe
Q 040987 458 GGL-VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVS 536 (762)
Q Consensus 458 ~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~ 536 (762)
|-. |++|+.+|.|++||++.......+.....- ......+++..+++...+|+|+ . +.|+||++
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~-----~yGs~lTal~VH~hapiiAsGs---------~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW-----EYGSALTALTVHEHAPIIASGS---------A-QLIKIYSL 1332 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeecc-----ccCccceeeeeccCCCeeeecC---------c-ceEEEEec
Confidence 654 999999999999999875322222211100 0022489999999999999997 5 89999999
Q ss_pred cCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 537 GTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 537 ~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
...+.........+.+.+.+.+.|++|+|-.-++|+|+.|.+|.||.....
T Consensus 1333 ~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1333 SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 866542222212233343677899999999999999999999999987654
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=8.1e-17 Score=168.01 Aligned_cols=235 Identities=11% Similarity=0.022 Sum_probs=164.3
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
+..|++||.+......+..+...+..+.|+|||+.|++.+.+ ..|++||+.+++.... .... +...
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~----------g~~~ 251 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR----------GHNG 251 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC----------CccC
Confidence 468999999877766667777889999999999999887654 3699999988754322 1111 2234
Q ss_pred eEEEeCCCCEEEEee-cCceEEE--EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 451 DIAFNHDGGLVALRA-ENYCIHF--YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~-~dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
.++|+|||+.|+++. .+|.+.+ ||+.++.. ..+.. + ...+....|+|||+.|+..+. .
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~----~------~~~~~~~~wSpDG~~i~f~s~--------~ 312 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS----G------AGNNTEPSWSPDGQSILFTSD--------R 312 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc----C------CCCcCCEEECCCCCEEEEEEC--------C
Confidence 689999999988865 5775554 56655432 22221 1 344678999999998887652 4
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
++...+|++.......... .+ .. ..+.|+|||++|++.+.++ +.+||+.++.......
T Consensus 313 ~g~~~I~~~~~~~~~~~~l-----~~-~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~------------- 370 (429)
T PRK01742 313 SGSPQVYRMSASGGGASLV-----GG-RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS------------- 370 (429)
T ss_pred CCCceEEEEECCCCCeEEe-----cC-CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------------
Confidence 5667888775433222221 23 22 4578999999999888765 6669998776432221
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeC--CCCeEEEEeccccCceeEEEEeCC
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDP--DRNVLVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~--~~~~~~~~l~~~~~~v~~~~~s~d 660 (762)
......+.|+|||++|++++ ++.+.+|++ .+|+.+..+.+|.+.+..++|+|-
T Consensus 371 ~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 371 TFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 11234678999999999987 887777765 357788888888888999999983
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.3e-15 Score=140.49 Aligned_cols=237 Identities=15% Similarity=0.223 Sum_probs=177.3
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
.+.. +.|+.|...|..|+..--++|..+.-............|.-+-||.+- --+++...-+.+++.+++.+
T Consensus 7 ti~~-~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSL-------vaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 7 TINF-IGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSL-------VAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred ceee-eeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccce-------eEEEecCCCceEEEEEcccC
Confidence 3444 678999999999986556788876544332233333456666676643 23444433456999999999
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
..+..+....++.++.+ +.++ +++ +....|.|||+++.+.++.....
T Consensus 79 ~~ICe~~fpt~IL~Vrm----------Nr~R--LvV---------------------~Lee~IyIydI~~MklLhTI~t~ 125 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRM----------NRKR--LVV---------------------CLEESIYIYDIKDMKLLHTIETT 125 (391)
T ss_pred ceEEEEecCCceEEEEE----------ccce--EEE---------------------EEcccEEEEecccceeehhhhcc
Confidence 99999988888888865 2222 122 24456999999999999766555
Q ss_pred --cCCCceEEEECCCCCEEEE---EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe-EEE
Q 040987 234 --EMKEPQVITISSSGKYFGI---RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR-ILI 307 (762)
Q Consensus 234 --~~~~v~~~~~spdg~~la~---~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-v~v 307 (762)
+...+.++.+++++.+||. ...|.|.+||+.+-+.. .....|.+.+.+++|+++|.+||+++..|+ |||
T Consensus 126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v-----~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV-----NTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee-----eEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 5566777777788889984 26799999999987754 666799999999999999999999999986 799
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeecc--ccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH--PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
+.+.+++.+. .++.. ...|++++|+|++++|++.+..++|.++.++..
T Consensus 201 f~v~~G~kl~------------------------------eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 201 FSVPEGQKLY------------------------------EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEcCCccEee------------------------------eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9998886554 22221 346899999999999999999999999998865
Q ss_pred c
Q 040987 386 K 386 (762)
Q Consensus 386 ~ 386 (762)
.
T Consensus 251 ~ 251 (391)
T KOG2110|consen 251 S 251 (391)
T ss_pred c
Confidence 5
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=1.8e-15 Score=134.78 Aligned_cols=264 Identities=13% Similarity=0.140 Sum_probs=189.5
Q ss_pred ccccEEEE--ecCCccccceeeeccCCCceEEEECCCCC----EEEEEeCCeEEEEEccCchhh----hheeeeeeeccC
Q 040987 212 MNGRICKC--NLTESRLAGGVTLAEMKEPQVITISSSGK----YFGIRKQRKLLIWKVPDVEAE----RVVMRKITLHHT 281 (762)
Q Consensus 212 ~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~spdg~----~la~~~~~~i~iwd~~~~~~~----~~~~~~~~~~~~ 281 (762)
..+.|.+. |.++++.+......|.-+++.+.|.||.. -|.+..+..+++|.+...+.. ..........+.
T Consensus 71 ~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~ 150 (364)
T KOG0290|consen 71 YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFC 150 (364)
T ss_pred cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccC
Confidence 34555555 44556666555578899999999999874 234455678999998853221 011112234567
Q ss_pred cCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 282 KKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 282 ~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
+++++..|.. |-+++.+.+-|-+..|||++.+... .....+-.|...|..++
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~---------------------------~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG---------------------------TVKTQLIAHDKEVYDIA 203 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeecccc---------------------------ceeeEEEecCcceeEEE
Confidence 8999999988 6678899999999999999876321 12356778999999999
Q ss_pred EecCC-CEEEEEecCCeEEEEecCCCce---eccCCC-CCCeEEEEeCCC-CCeEEEEec-CCcEEEEEcCC-ceEEEEE
Q 040987 361 FSSDG-AYLYSGGKEGVLVVWQLDTGKK---KFLPRI-GSPLLYFTESPD-PSLSSISCA-DNQVHLLKMPS-MEIIRSI 432 (762)
Q Consensus 361 ~s~~g-~~l~s~~~dg~i~~wd~~~~~~---~~~~~~-~~~v~~~~~s~~-~~~l~~~~~-d~~i~i~d~~~-~~~~~~~ 432 (762)
|..++ +.+++++.||.+++||++..+. ++.... ..+...++|++. -+++++-.. ...|.|.|++. ..++..+
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99865 5788999999999999998665 233333 567888999875 466766555 45799999986 5677888
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CC
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DG 510 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g 510 (762)
++|. +.|..++|.|. ...|++++.|..+.+||+.+.-...... ..... .....|..+.|++ .+
T Consensus 284 ~~H~----------a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d-Pilay----~a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 284 RNHQ----------ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED-PILAY----TAGGEVNQIQWSSSQP 348 (364)
T ss_pred hcCc----------ccccceEecCCCCceeeecCCcceEEEEecccccccCCCC-chhhh----hccceeeeeeecccCC
Confidence 8887 88999999995 5689999999999999997543200000 00000 0166799999996 56
Q ss_pred CeEEEEe
Q 040987 511 SLMSTVD 517 (762)
Q Consensus 511 ~~l~~~~ 517 (762)
.+++.+.
T Consensus 349 Dwiai~~ 355 (364)
T KOG0290|consen 349 DWIAICF 355 (364)
T ss_pred CEEEEEe
Confidence 7888875
No 199
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.5e-17 Score=159.04 Aligned_cols=273 Identities=13% Similarity=0.125 Sum_probs=192.7
Q ss_pred eeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEcc---CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 230 VTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVP---DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
.+..|...++.++|.|-...|+ +..++.+.+|++. ............+.+|.++|.|++++++++.+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4556888999999999888887 5589999999993 22222234456677999999999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
+.|++..+..-. ...+.......+.||.+.|+.+++++...+|++++.||++++|+....
T Consensus 369 ~~w~~p~n~dp~--------------------ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 369 RCWNLPPNQDPD--------------------DSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred eeeccCCCCCcc--------------------cccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 999875221100 000111234678999999999999999999999999999999998776
Q ss_pred ceecc--CCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE
Q 040987 386 KKKFL--PRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA 462 (762)
Q Consensus 386 ~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 462 (762)
....+ ....+...++.+-... ...++....+.-.++++.....+..+.....+. ......+..+...|.+.+.+
T Consensus 429 ~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~---~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 429 SPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG---PRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc---ccccCccceEEecCCCCeeE
Confidence 66222 2222233344442221 222222223333344444444444443322111 11113566788899999999
Q ss_pred EeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce
Q 040987 463 LRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE 542 (762)
Q Consensus 463 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 542 (762)
++..|+.|+++|..++..+...... ...++++++.|+|-+|++++ .|+.+++|.+....+.
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~s~~a~----------~~svtslai~~ng~~l~s~s---------~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILHSMVAH----------KDSVTSLAIDPNGPYLMSGS---------HDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecccCCceecccccccccchheeec----------cceecceeecCCCceEEeec---------CCceeehhhccchhee
Confidence 9999999999999999887776554 66799999999999999999 8999999999766554
Q ss_pred eE
Q 040987 543 FT 544 (762)
Q Consensus 543 ~~ 544 (762)
..
T Consensus 567 ~e 568 (577)
T KOG0642|consen 567 LE 568 (577)
T ss_pred ec
Confidence 43
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.4e-16 Score=164.49 Aligned_cols=234 Identities=13% Similarity=0.066 Sum_probs=159.1
Q ss_pred CccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccCcCeEE
Q 040987 211 TMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHTKKLTV 286 (762)
Q Consensus 211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 286 (762)
..+..|.+||.+.... ..+..+...+..++|||||+.|+... +..|++||+.+++.. ......+....
T Consensus 181 ~~~~~i~i~d~dg~~~--~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~------~l~~~~g~~~~ 252 (429)
T PRK01742 181 SQPYEVRVADYDGFNQ--FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK------VVASFRGHNGA 252 (429)
T ss_pred CceEEEEEECCCCCCc--eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE------EEecCCCccCc
Confidence 3468999999876553 35566778899999999999998542 247999999887642 11122233457
Q ss_pred EEEcCCCcEEEEee-cCCeEEEE--eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 287 LAFHPTQRIVAAGD-VTGRILIW--RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 287 ~~~sp~~~~l~~~~-~dg~v~vw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
++|+|||++|++++ .+|.+.|| |+.++. ...+..+...+..+.|+|
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-------------------------------~~~lt~~~~~~~~~~wSp 301 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGT-------------------------------PSQLTSGAGNNTEPSWSP 301 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCC-------------------------------eEeeccCCCCcCCEEECC
Confidence 89999999888764 57776666 443332 234455666678899999
Q ss_pred CCCEEEEEe-cCCeEEEEecC--CCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 364 DGAYLYSGG-KEGVLVVWQLD--TGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 364 ~g~~l~s~~-~dg~i~~wd~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
||+.|+.++ .++...+|++. ++....+ .+.. ....|+|||+.|++.+.+ .+.+||+.+++........
T Consensus 302 DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~----- 372 (429)
T PRK01742 302 DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTF----- 372 (429)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCC-----
Confidence 999877655 46777777654 3333222 2222 457899999999888765 5667999887654332221
Q ss_pred CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC--CCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL--DDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
....+.|+|||++|++++.++...+|++. +++....+... ...+...+|+|-
T Consensus 373 -------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~----------~g~~~~p~wsp~ 426 (429)
T PRK01742 373 -------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS----------DGQVKFPAWSPY 426 (429)
T ss_pred -------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC----------CCCCCCcccCCC
Confidence 12467899999999999999888877753 45444444321 345677788874
No 201
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=4.9e-16 Score=144.20 Aligned_cols=212 Identities=14% Similarity=0.185 Sum_probs=168.7
Q ss_pred eeeeccccceeEEEEec-CCCEEEEEecCCeEEEEecCCCce--------eccCCCCCCeEEEEeCCC-CCeEEEEecCC
Q 040987 347 TTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKK--------KFLPRIGSPLLYFTESPD-PSLSSISCADN 416 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~--------~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~ 416 (762)
-.+.+|..+|..+.|+| +.+.|++|+.|.+|.+|++-.+.. ..+.+|...|.-++|+|. .+.|++++.|+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 46789999999999999 557899999999999999875543 356778889999999995 46788899999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.|.+|++.+|+.+-++. |. ..|.++.|+.||.++++.+.|..|++||.++++.+.+-..+.
T Consensus 155 ~v~iWnv~tgeali~l~-hp----------d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he-------- 215 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HP----------DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE-------- 215 (472)
T ss_pred eEEEEeccCCceeeecC-CC----------CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc--------
Confidence 99999999999888877 65 789999999999999999999999999999998776652221
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-C
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-Y 575 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~ 575 (762)
......+.|-.+|..+.+|..+ -.+.++-+||...-+....+..+ .. .+.|.-.-|.||.+++..++ .
T Consensus 216 -G~k~~Raifl~~g~i~tTGfsr------~seRq~aLwdp~nl~eP~~~~el---Dt-SnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 216 -GAKPARAIFLASGKIFTTGFSR------MSERQIALWDPNNLEEPIALQEL---DT-SNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred -CCCcceeEEeccCceeeecccc------ccccceeccCcccccCcceeEEe---cc-CCceEEeeecCCCCEEEEEecC
Confidence 2345677888899955555311 15679999998877665444432 22 56787788899988876555 6
Q ss_pred CCcEEEEEccccc
Q 040987 576 GGDFKVWICNDEL 588 (762)
Q Consensus 576 dg~i~iwd~~~~~ 588 (762)
|+.|+.|.+....
T Consensus 285 D~~IRYyEit~d~ 297 (472)
T KOG0303|consen 285 DSSIRYFEITNEP 297 (472)
T ss_pred CcceEEEEecCCC
Confidence 8999999997655
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=4.8e-16 Score=140.48 Aligned_cols=212 Identities=11% Similarity=0.138 Sum_probs=169.0
Q ss_pred CCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 235 MKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
..+|+|.+|++|+..+|.+ ....|.||.....+.- .....+..|...|+.+.|+|..+.|++++.|..-++|....+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w--~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW--EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCc--eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 5689999999999999966 6679999998877743 455777899999999999999999999999999999997444
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK----- 388 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~----- 388 (762)
.. +++.-.+..++...+++.|+|.++.|++|+....|.+|-++....-
T Consensus 88 ~~---------------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh 140 (361)
T KOG1523|consen 88 GT---------------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH 140 (361)
T ss_pred Ce---------------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh
Confidence 32 2455677889999999999999999999999999999988765542
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC--------CC----CCCCcccCceeeEEEeC
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL--------PC----PLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~----~~~~~~~~~v~~~~~s~ 456 (762)
....+...|.++.|+|++-++++|+.|+..+++..- ++.+..... +. .......+.+..+.|+|
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEe----eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 334566789999999999999999999999998652 111111100 00 00012237899999999
Q ss_pred CCCEEEEeecCceEEEEEcCCCC
Q 040987 457 DGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 457 ~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
+|..|+..+.|..+.+-|.....
T Consensus 217 sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCEeeEecCCCceEEeecCCCc
Confidence 99999999999999999987664
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.5e-16 Score=161.23 Aligned_cols=300 Identities=14% Similarity=0.176 Sum_probs=210.4
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC----CCCCeEEEEeC--CCCCeEEEEecCCcEEEEEcCC-
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR----IGSPLLYFTES--PDPSLSSISCADNQVHLLKMPS- 425 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~----~~~~v~~~~~s--~~~~~l~~~~~d~~i~i~d~~~- 425 (762)
......+.|+|=...++++...-.|++||.+.++...-.. ....|+.+.+- .|..++++++.||.|+||+--.
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 3355678888888889998877899999999988753222 23467787773 3567899999999999997532
Q ss_pred ----ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 426 ----MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 426 ----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+++..+.+........ .+.-.-+.|.....+|+++++-..|+|||.........++... ...+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~---r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s---------~t~v 1211 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGA---RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS---------STLV 1211 (1387)
T ss_pred ccCCceeEEeeccccccCccC---CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC---------Cccc
Confidence 23444333332211111 1222446677766677777778899999999877766665432 4456
Q ss_pred EEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCc--eEEEEEcCCCCe-EEEEeCCC
Q 040987 502 TLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAG--ISAVAFHPNRRA-AVSSSYGG 577 (762)
Q Consensus 502 ~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~--v~~~~~spd~~~-l~~~~~dg 577 (762)
+++.-+- .|+.+++|. .||.|++||.+......... .+..| ... |..+.+-+.|-. |++|+.||
T Consensus 1212 TaLS~~~~~gn~i~AGf---------aDGsvRvyD~R~a~~ds~v~--~~R~h-~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGF---------ADGSVRVYDRRMAPPDSLVC--VYREH-NDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred eeecccccCCceEEEee---------cCCceEEeecccCCccccce--eeccc-CCcccceeEEeecCCCcceeeeccCC
Confidence 6665543 468899988 89999999998665432221 23566 555 999999987654 99999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecc-------ccC
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGE-------TLT 650 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~-------~~~ 650 (762)
.|++||++.......+. .......++..+++..+++...+|+|+.+.|+||++. |+.+..++. ..+
T Consensus 1280 ~I~~~DlR~~~~e~~~~------iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLT------IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred eEEEEecccCcccccce------eeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCC
Confidence 99999998753322221 0000001235899999999999999988999999998 444444432 234
Q ss_pred ceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 651 PIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 651 ~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
.+.+++|+|---+||.|+.|.. |.||....+++
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~--V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADST--VSIYSCEKPRL 1385 (1387)
T ss_pred CcceeeecchhHhhhhccCCce--EEEeecCCcCC
Confidence 5899999999889999999988 99998876543
No 204
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=9.2e-16 Score=132.98 Aligned_cols=256 Identities=11% Similarity=0.077 Sum_probs=179.6
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
.|.+-+++|.+++|+++..+|.|.++.+.+...-......+.++-....|++.+..++|.. .+|++++ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 3556678999999999999999999998752111111111111112244568999999983 3566654 599998876
Q ss_pred CCCCc------eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 476 LDDRG------ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 476 ~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
+.... +.+.....+. ..-....|+++-..|..+-+++++ +|+.++-||+++++...++
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~---~~~evPeINam~ldP~enSi~~Ag---------GD~~~y~~dlE~G~i~r~~---- 152 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQV---DAVEVPEINAMWLDPSENSILFAG---------GDGVIYQVDLEDGRIQREY---- 152 (325)
T ss_pred hhhhhhccchhhhhhcCcccc---CcccCCccceeEeccCCCcEEEec---------CCeEEEEEEecCCEEEEEE----
Confidence 54332 1111111110 001145689999999888887777 8999999999999876655
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc-cCCCCeEEEEEcCCCcEEEEEcC
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS-YKKKAMTAAAFSADGSVLAVAAE 628 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~dg~~la~~~d 628 (762)
.+| .+.|.+++-......+.+|++||++|+||.++++....++ .+....... .-...|.+++- +..+|++|+.
T Consensus 153 -rGH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie--~yk~~~~lRp~~g~wigala~--~edWlvCGgG 226 (325)
T KOG0649|consen 153 -RGH-TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE--PYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG 226 (325)
T ss_pred -cCC-cceeeeeeecccCcceeecCCCccEEEEeccccceeEEec--cccChhhcCcccCceeEEEec--cCceEEecCC
Confidence 799 9999999986666789999999999999999999887765 111111111 12456777775 4559999998
Q ss_pred CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 629 TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 629 ~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
..+.+|++.+.++..++. -..++..+.|-. +.+++++..+. |.-|.+.
T Consensus 227 p~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~--v~~~~l~ 274 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNH--VQSYTLN 274 (325)
T ss_pred CceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccc--eeeeeec
Confidence 899999999998888775 456688889966 46777776655 8888764
No 205
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.3e-16 Score=143.80 Aligned_cols=283 Identities=12% Similarity=0.117 Sum_probs=195.7
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCC--CCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccC-cC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS--GKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHT-KK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-~~ 283 (762)
|++.++|.|++||..+++.+ +...+++..++.+.|..+ ...+. ++.||+|++||++...... +.....+. .+
T Consensus 44 av~lSngsv~lyd~~tg~~l-~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a---~~~~~~~~~~~ 119 (376)
T KOG1188|consen 44 AVSLSNGSVRLYDKGTGQLL-EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA---RISWTQQSGTP 119 (376)
T ss_pred EEEecCCeEEEEeccchhhh-heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh---heeccCCCCCc
Confidence 66789999999999999988 788889999999999874 34444 5689999999999877541 12223333 56
Q ss_pred eEEEEEcCCCcEEEEeec----CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 284 LTVLAFHPTQRIVAAGDV----TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
..+++..-.++.+++|.. +-.|.+||++..+.. ...-...|.+.|+++
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~----------------------------l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL----------------------------LRQLNESHNDDVTQL 171 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccch----------------------------hhhhhhhccCcceeE
Confidence 777777767788888743 678999999776531 113346799999999
Q ss_pred EEecC-CCEEEEEecCCeEEEEecCCCce----eccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 360 IFSSD-GAYLYSGGKEGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 360 ~~s~~-g~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
+|+|. .+.|++|+.||-|.++|++.... .....+...|.++.|..++ +.|.+-+..+...+|+++.+.....+.
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 99994 57899999999999999987644 3456677889999998877 568888899999999999887554443
Q ss_pred cCCCCCCC--CCcccCceeeEEEeCCCCEEEEeec-CceEEEEEc---CCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 434 GIKLPCPL--PEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSL---LDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 434 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
........ ....-..+.......+....+.++. -+...++-+ .++...........+| ..-|+++.|.
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~------~eiVR~i~~~ 325 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH------EEIVRDILFD 325 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc------HHHHHHHhhh
Confidence 32110000 0000011222222224445555544 444554433 3333333333332223 6678889999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEec
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~ 537 (762)
..+..+.+|+ +||.+.+|..+
T Consensus 326 ~~~~~l~TGG---------EDG~l~~Wk~~ 346 (376)
T KOG1188|consen 326 VKNDVLYTGG---------EDGLLQAWKVE 346 (376)
T ss_pred cccceeeccC---------CCceEEEEecC
Confidence 8999999998 99999999964
No 206
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=1.4e-15 Score=135.39 Aligned_cols=270 Identities=13% Similarity=0.142 Sum_probs=193.9
Q ss_pred ceeEEEEecC----CCeEEEEecC--Ccceeee--ecCcccccCCceeecCC-----CEEEEEeCCEEEEEEccc--ceE
Q 040987 42 RSFIFAVARS----SGLCRTAEYP--AVNSKMI--RGGRSYVSSPPAFSNDV-----KRLLVCTSNTVSIFSTST--GLQ 106 (762)
Q Consensus 42 ~~~~~a~~~~----~g~i~~~~~~--~~~~~~~--~~h~~~v~~~~~~s~dg-----~~la~~~~~~i~iwd~~~--~~~ 106 (762)
....+|+|+- ++.|.+..+. +++.+.. ..|.-+++. +-|.||. ++||+.+ ..+++|.+.. ++.
T Consensus 58 ~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK-~~wiPd~~g~~pdlLATs~-D~LRlWri~~ee~~~ 135 (364)
T KOG0290|consen 58 KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTK-LMWIPDSKGVYPDLLATSS-DFLRLWRIGDEESRV 135 (364)
T ss_pred cceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccc-eEecCCccccCcchhhccc-CeEEEEeccCcCCce
Confidence 4678888873 5666666554 3444433 589999997 9999987 3566654 5789999863 221
Q ss_pred --Eeee-----cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcc
Q 040987 107 --ISSL-----EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQ 179 (762)
Q Consensus 107 --~~~l-----~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (762)
...| ..+.+++++..|..-.. +++.++|-|-|..|||+++|.. ..
T Consensus 136 ~~~~~L~~~kns~~~aPlTSFDWne~dp------~~igtSSiDTTCTiWdie~~~~-~~--------------------- 187 (364)
T KOG0290|consen 136 ELQSVLNNNKNSEFCAPLTSFDWNEVDP------NLIGTSSIDTTCTIWDIETGVS-GT--------------------- 187 (364)
T ss_pred ehhhhhccCcccccCCcccccccccCCc------ceeEeecccCeEEEEEEeeccc-cc---------------------
Confidence 1112 35778999999998876 7889999999999999988621 00
Q ss_pred cCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-E-EEeCCe
Q 040987 180 SDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-G-IRKQRK 257 (762)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a-~~~~~~ 257 (762)
++..+..|.+.|..++|+.++..+ | +|.||.
T Consensus 188 -----------------------------------------------vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 188 -----------------------------------------------VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred -----------------------------------------------eeeEEEecCcceeEEEeccCccceEEEecCCCc
Confidence 014667799999999999977654 5 678999
Q ss_pred EEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCC
Q 040987 258 LLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERP 335 (762)
Q Consensus 258 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (762)
+++||++..+-. .+.........+...++|++ |-+++|+-.. ...|.+.|++...
T Consensus 221 vRmFDLR~leHS--TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------------------- 277 (364)
T KOG0290|consen 221 VRMFDLRSLEHS--TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------------------- 277 (364)
T ss_pred EEEEEecccccc--eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC---------------------
Confidence 999999987754 22122222245778899988 4557776444 4579999986543
Q ss_pred CcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCC-CCC
Q 040987 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESP-DPS 407 (762)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~-~~~ 407 (762)
.++..+++|...|+.++|.|. ...|++++.|.++.+||+.+.-. +.....++.|..+.|++ .+.
T Consensus 278 --------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 278 --------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred --------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC
Confidence 356789999999999999995 57899999999999999986433 22333567899999985 556
Q ss_pred eEEEEecCCcEEE
Q 040987 408 LSSISCADNQVHL 420 (762)
Q Consensus 408 ~l~~~~~d~~i~i 420 (762)
.++++ .++.+.+
T Consensus 350 wiai~-~~kklei 361 (364)
T KOG0290|consen 350 WIAIC-FGKKLEI 361 (364)
T ss_pred EEEEE-ecCeeeE
Confidence 77765 3444433
No 207
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.72 E-value=1.3e-14 Score=139.58 Aligned_cols=380 Identities=13% Similarity=0.076 Sum_probs=248.8
Q ss_pred EEEecCCcceeeeec-CcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceee
Q 040987 56 RTAEYPAVNSKMIRG-GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILS 134 (762)
Q Consensus 56 ~~~~~~~~~~~~~~~-h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~ 134 (762)
.+|+..+...-...+ -.-++.. +.+||.|++|++.....|.+|+-..+..+.++. | ..|..+.|||.+ +
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~-~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~-------k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAY-VSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNE-------K 84 (561)
T ss_pred EeecCccccccccccccCcchhh-eeecCcchheehhhccceEEccccchhheeeee-c-CCceecccCccc-------c
Confidence 567777666655555 4445665 999999999999998889999988776666665 4 459999999999 7
Q ss_pred eEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccc
Q 040987 135 YCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNG 214 (762)
Q Consensus 135 ~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 214 (762)
||.|-+....+ +.+. .+ .--..++
T Consensus 85 YL~tw~~~pi~---~pe~-----e~------------------------------------------------sp~~~~n 108 (561)
T COG5354 85 YLVTWSREPII---EPEI-----EI------------------------------------------------SPFTSKN 108 (561)
T ss_pred eeeeeccCCcc---Chhh-----cc------------------------------------------------CCccccC
Confidence 99887765542 1000 00 0011334
Q ss_pred cEEEEecCCccccceeeeccCC-Cce-EEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC
Q 040987 215 RICKCNLTESRLAGGVTLAEMK-EPQ-VITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT 292 (762)
Q Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~-~v~-~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 292 (762)
.+.+||..+|..+......... -.+ -+.|+-|.+++|--....+.|+++ +......+... -....|....|+|.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~---lr~~gi~dFsisP~ 184 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKN---LRPVGILDFSISPE 184 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhh---ccccceeeEEecCC
Confidence 6667777777666333322222 123 678999999998556778999997 33322111111 12357888999996
Q ss_pred C--cEEEE-----eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 293 Q--RIVAA-----GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 293 ~--~~l~~-----~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
+ ..||+ .+.++.+++|.+..+..+.. ..+ ..-.=..+.|.+.|
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t----------------------------k~l--fk~~~~qLkW~~~g 234 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT----------------------------KNL--FKVSGVQLKWQVLG 234 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeee----------------------------eee--EeecccEEEEecCC
Confidence 4 34553 45678899999865543321 111 11122457788888
Q ss_pred CEEEEEe-----------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe--cCCcEEEEEcCCceEEEEE
Q 040987 366 AYLYSGG-----------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC--ADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 366 ~~l~s~~-----------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~ 432 (762)
++|+.-- ....++++++............++|...+|.|.++.+++.+ .+..+.++|++.. +...+
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~ 313 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF 313 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec
Confidence 7766421 12468888887544433336678999999999998877654 5778999999865 43333
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCCCCcee-eEEeecccccCCCCcceeEEEEEEec
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLDDRGIS-EVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
.. ..=..+.|+|.++++++++-+ |.+.+||........ .+. .....-..|+|
T Consensus 314 Pe------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~------------~~n~s~~~wsp 369 (561)
T COG5354 314 PE------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN------------GLNTSYCDWSP 369 (561)
T ss_pred CC------------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee------------cCCceEeeccC
Confidence 22 223568899999999998765 789999987654433 221 12245568999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
|++++.+...... ...|..+++||+.....- ..+.+.|.|.|++.-+.+.+.
T Consensus 370 d~qF~~~~~ts~k---~~~Dn~i~l~~v~g~~~f--------------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 370 DGQFYDTDTTSEK---LRVDNSIKLWDVYGAKVF--------------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CceEEEecCCCcc---cccCcceEEEEecCchhh--------------hhhhccccCCcccceeeccCC
Confidence 9999887753211 226889999999865321 445688999888877766554
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=4.2e-15 Score=154.59 Aligned_cols=232 Identities=12% Similarity=0.093 Sum_probs=157.9
Q ss_pred eEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe----CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcc
Q 040987 54 LCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPA 129 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~----~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~ 129 (762)
.|.++|........+..+...+.. ++|||||+.||+.+ +..|.+||+.+|+... +....+.+..++|+|||+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~-p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~-- 255 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMS-PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGS-- 255 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceee-eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCC--
Confidence 689999988777777778888886 99999999999875 2589999998885332 222233355689999994
Q ss_pred cceeeeEEeeecCC--eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 130 TKILSYCWTASLDG--TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 130 ~~l~~~l~s~s~d~--~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
.++++.+.++ .|.+||+.+++..+.
T Consensus 256 ----~La~~~~~~g~~~I~~~d~~tg~~~~l------------------------------------------------- 282 (429)
T PRK03629 256 ----KLAFALSKTGSLNLYVMDLASGQIRQV------------------------------------------------- 282 (429)
T ss_pred ----EEEEEEcCCCCcEEEEEECCCCCEEEc-------------------------------------------------
Confidence 2333444444 477788876653221
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC--C--eEEEEEccCchhhhheeeeeeeccCcC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ--R--KLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
..+...+....|+|||+.|+...+ + .|+++++.+++.. .+ ..+...
T Consensus 283 ------------------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-----~l-t~~~~~ 332 (429)
T PRK03629 283 ------------------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-----RI-TWEGSQ 332 (429)
T ss_pred ------------------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-----Ee-ecCCCC
Confidence 111223456799999999985432 3 4555577666532 22 233445
Q ss_pred eEEEEEcCCCcEEEEeecC---CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 284 LTVLAFHPTQRIVAAGDVT---GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
.....|+|||++|+..+.+ ..|.+||+.+++.. .+... .......
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-------------------------------~Lt~~-~~~~~p~ 380 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-------------------------------VLTDT-FLDETPS 380 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-------------------------------EeCCC-CCCCCce
Confidence 6678999999999876543 35888898766422 11111 1234578
Q ss_pred EecCCCEEEEEecCCe---EEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 361 FSSDGAYLYSGGKEGV---LVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~---i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
|+|||+.|+.++.++. +.+++++......+..+.+.+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 9999999999887753 7888887666666777777888888887
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=9.8e-17 Score=150.84 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=146.8
Q ss_pred CceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceE
Q 040987 78 PPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156 (762)
Q Consensus 78 ~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~ 156 (762)
.++|+.||..||+++ ||.++||+..+...+.....|.+.|.+++||||| ++|++.+.| ..+||+.++|.++
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-------k~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-------KFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-------cEEEEecCC-ceEEEEeccCchh
Confidence 399999999999999 8999999988888888888999999999999999 789999999 9999999999665
Q ss_pred EEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCC
Q 040987 157 KTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMK 236 (762)
Q Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (762)
....... ...
T Consensus 221 a~~t~~~----------------------------------------------------------------------k~~ 230 (398)
T KOG0771|consen 221 ARKTPFS----------------------------------------------------------------------KDE 230 (398)
T ss_pred hhcCCcc----------------------------------------------------------------------cch
Confidence 5443110 011
Q ss_pred CceEEEECCCC---CE-EEEE--eCCeEEEEEccCchhhhh-eeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEe
Q 040987 237 EPQVITISSSG---KY-FGIR--KQRKLLIWKVPDVEAERV-VMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWR 309 (762)
Q Consensus 237 ~v~~~~~spdg---~~-la~~--~~~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~ 309 (762)
....+.|+.|+ .+ +|+. ..+.|..|++........ +..+.. .....|.+++.++||+++|.|+.||.|.+++
T Consensus 231 ~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 231 MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLALGTMDGSVAIYD 309 (398)
T ss_pred hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence 12334454444 22 2222 234455554433221000 111112 2335799999999999999999999999999
Q ss_pred ccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 310 GFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
..+.+.+. ..-+.|...|+.+.|+||.+++++.+.+.+..+..+.-
T Consensus 310 ~~~lq~~~-----------------------------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 310 AKSLQRLQ-----------------------------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eceeeeeE-----------------------------eehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 87766543 44567999999999999999999999998888887664
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=3.6e-15 Score=156.37 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=161.2
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeC----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
..|.++|........+..|...+.+ ++|||||+.||+.+. ..|.+||+.+++. ..+..+.+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~-p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLT-PRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEe-eEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCC-
Confidence 3788999988888888889889997 999999999999862 6899999988865 34556677788999999995
Q ss_pred ccceeeeEEeeecCCe--EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccC
Q 040987 129 ATKILSYCWTASLDGT--IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKE 206 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~--i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (762)
.++++.+.++. |.+||+.+++..+ +
T Consensus 259 -----~la~~~~~~g~~~Iy~~d~~~~~~~~-L----------------------------------------------- 285 (435)
T PRK05137 259 -----KVVMSLSQGGNTDIYTMDLRSGTTTR-L----------------------------------------------- 285 (435)
T ss_pred -----EEEEEEecCCCceEEEEECCCCceEE-c-----------------------------------------------
Confidence 34456666654 6666776654321 1
Q ss_pred CCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC----CeEEEEEccCchhhhheeeeeeeccCc
Q 040987 207 PRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ----RKLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 207 ~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
..+........|+|||+.|+...+ ..|+++|+.+++.. .+. .+..
T Consensus 286 -------------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-----~lt-~~~~ 334 (435)
T PRK05137 286 -------------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-----RIS-FGGG 334 (435)
T ss_pred -------------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-----Eee-cCCC
Confidence 112223445799999999985532 36888898776542 222 3345
Q ss_pred CeEEEEEcCCCcEEEEeecC---CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 283 KLTVLAFHPTQRIVAAGDVT---GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
.+....|+|||++|+....+ ..|.+|++.++.. ..+. ....+..+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-------------------------------~~lt-~~~~~~~p 382 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-------------------------------RILT-SGFLVEGP 382 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-------------------------------Eecc-CCCCCCCC
Confidence 56778999999999876543 3578888754421 1111 11235678
Q ss_pred EEecCCCEEEEEecC------CeEEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 360 IFSSDGAYLYSGGKE------GVLVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 360 ~~s~~g~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
.|+|||+.|+..+.+ ..++++|+..+....+. ....+...+|+|
T Consensus 383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP-TPGDASDPAWSP 432 (435)
T ss_pred eECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc-CCCCccCcccCC
Confidence 999999998876543 36888898877665444 344566777776
No 211
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5e-14 Score=137.50 Aligned_cols=353 Identities=13% Similarity=0.220 Sum_probs=228.3
Q ss_pred EEEEeCCeEEEEEccCchhhhheeeeeeecc---CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccccccc
Q 040987 250 FGIRKQRKLLIWKVPDVEAERVVMRKITLHH---TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLN 326 (762)
Q Consensus 250 la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 326 (762)
+++-+...+.+|........ .....+ ....+..++|++|+++|.+ .+..++|++......
T Consensus 5 ~aVRsSe~~~l~~~~~~~~~-----~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~----------- 67 (566)
T KOG2315|consen 5 YAVRSSEGFYLFNGPGSKDA-----VTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKV----------- 67 (566)
T ss_pred EEEEccceeEEeccCCcccc-----ccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcE-----------
Confidence 44555667888887664332 111112 3347788999999988876 466799999866531
Q ss_pred ccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-----c-----CCeEEEEecCCCceeccC--CCC
Q 040987 327 LMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-----K-----EGVLVVWQLDTGKKKFLP--RIG 394 (762)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----~-----dg~i~~wd~~~~~~~~~~--~~~ 394 (762)
.+......++++.|+|-|.+|.+-- . ...+.+|+++++...... ...
T Consensus 68 ---------------------~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q 126 (566)
T KOG2315|consen 68 ---------------------VLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ 126 (566)
T ss_pred ---------------------EEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh
Confidence 1111222678999999999887521 1 245789999996554322 222
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE-EEEEccCCCCCCCCCcccCceeeEEEeCCCC--EEEE-----eec
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI-IRSISGIKLPCPLPEEYKGLCRDIAFNHDGG--LVAL-----RAE 466 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~-----~~~ 466 (762)
.. .++.|++|..+.+- -..+.+++|+..+.+. ...+. ...+..+.+||.+. .+|+ .+.
T Consensus 127 ~~-W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~------------~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 127 NG-WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLS------------VSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred cC-cccccccchhhhhh-hhcceEEEEecCCccceeeeee------------ccceeeEEecCCCCCceEEEEccCCCCC
Confidence 22 68889988765443 2567899999987332 22232 25778889998743 3443 234
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE-EEEeeeccc--cCCCceeEEEEEEecCCCcee
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM-STVDIKLAE--EGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~~~~~--~~~~~d~~i~iwd~~~~~~~~ 543 (762)
-..+++|.......-..+ . .+.+ ....-..+.|++-|.-| +.++.+.+. .++.++.++++.++++.....
T Consensus 193 Pa~vri~~~~~~~~~~~~-a-~ksF-----Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPV-A-NKSF-----FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred CcEEEEeccccccccchh-h-hccc-----cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 468999987632211111 0 0000 02233457788877633 333322222 244567889999998555554
Q ss_pred EEEEEeecCCCCCceEEEEEcCCCCeEEE--EeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc
Q 040987 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVS--SSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS 621 (762)
Q Consensus 544 ~~~~~~~~~h~~~~v~~~~~spd~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 621 (762)
.+. . .++|.++.|+|+++-+++ |-.--.+.|||++..- +. ....++-+++-|+|.|+
T Consensus 266 ~L~------k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~-------------df~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 266 PLL------K-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VF-------------DFPEGPRNTAFFNPHGN 324 (566)
T ss_pred ecC------C-CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eE-------------eCCCCCccceEECCCCC
Confidence 442 2 789999999999986554 4556789999987432 22 23467778999999999
Q ss_pred EEEEEc----CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc------CCCCeEEEEECCCCceee
Q 040987 622 VLAVAA----ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW------GSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 622 ~la~~~----d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~------d~~~~v~vwd~~~~~~~~ 687 (762)
+|+.++ -|.+.|||+.+.+++..+.... -+-+.|+|||++++|+.. |+. ++||+.. |+++.
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg--~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNG--IKIWHYT-GSLLH 395 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCC--eEEEEec-Cceee
Confidence 998875 4899999999999998886543 455789999999999975 444 8999864 44443
No 212
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.3e-14 Score=141.94 Aligned_cols=561 Identities=14% Similarity=0.128 Sum_probs=311.5
Q ss_pred eeEEEEecCCCeEEEEecCCccee-eeecCcccccCCceeecC-----------CCE-EEEEe-CCEEEEEEcccceEEe
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSND-----------VKR-LLVCT-SNTVSIFSTSTGLQIS 108 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~d-----------g~~-la~~~-~~~i~iwd~~~~~~~~ 108 (762)
+-++|.|+. ..|.+.|.-+.+.+ .+.-|...|+. +.|+|- .++ ||++. .|.|.|||...+..+.
T Consensus 26 ~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~-VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 26 SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTS-VRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred cceEEEecC-ceEEEEehhhhhhhhccccCccceeE-EEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 558888763 44567777765554 45778888887 998762 233 44444 4999999999999999
Q ss_pred eecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceE-EEeecccccCCcccCCCCCce
Q 040987 109 SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIF-SMVIPSLLRQPAQSDEKPPKL 187 (762)
Q Consensus 109 ~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ 187 (762)
.++.|..+|..+.|-+.....+ .+|+.-....+|.+|+..+|++.........+. ++.+ |...+..
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Sr---d~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~----------DPfd~rh 170 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSR---DVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV----------DPFDSRH 170 (1062)
T ss_pred hhcCCCcchhheeeeeccCcch---heeEEecCCcEEEEEEccCCceeeccccCCcceeeeee----------CCCCcce
Confidence 9999999999999987543111 234455556899999999999988776655433 3433 2222223
Q ss_pred EEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccc-----ceee--eccCC---------CceEEEECCCCCEEE
Q 040987 188 FAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLA-----GGVT--LAEMK---------EPQVITISSSGKYFG 251 (762)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~-----~~~~--~~~~~---------~v~~~~~spdg~~la 251 (762)
+.+....+...... +....-.++..+.+.+.+...- +... ..++. ....++|+|.-+.+.
T Consensus 171 ~~~l~s~g~vl~~~----~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCK----DLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEccCceEEEEe----ccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 44443222211111 0011112222222222221000 0000 00010 113467788766554
Q ss_pred -EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc--EEEEeecCCeEEEEeccCCce-eecccccccccc
Q 040987 252 -IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR--IVAAGDVTGRILIWRGFGDRT-FATNDNKMNLNL 327 (762)
Q Consensus 252 -~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~ 327 (762)
......+.++|++-..+. ....-..+.+.-+.+-|+++ .|++.-.||.+.+|-.+.... ++......
T Consensus 247 fi~~prellv~dle~~~~l-----~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l---- 317 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCL-----AVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL---- 317 (1062)
T ss_pred EEEeccceEEEcchhhcee-----EEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh----
Confidence 667889999999877665 44445566677788888665 788889999999997644211 11000000
Q ss_pred cccccCCCCcccCCccccceeeecc-ccceeEEEEecC-CCEEEEEecCCeEEEEecCCCceecc---------------
Q 040987 328 MNNEEERPGVRDNDDADLCTTWHWH-PSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKKFL--------------- 390 (762)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~~~--------------- 390 (762)
. .+-++.+..+... +-.+......|. ...++..-.+|.+.+|.+.+++....
T Consensus 318 --------~---~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~ 386 (1062)
T KOG1912|consen 318 --------S---MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFN 386 (1062)
T ss_pred --------c---cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccccc
Confidence 0 0001111111110 111111222232 22333333455666676664432000
Q ss_pred -----------------CCCCCCeEEEEe-----------CCCC-------CeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 391 -----------------PRIGSPLLYFTE-----------SPDP-------SLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 391 -----------------~~~~~~v~~~~~-----------s~~~-------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
.+|.....+... .|.+ .+++.|+..|+|.++|+.++.....+..|
T Consensus 387 ~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvh 466 (1062)
T KOG1912|consen 387 LSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVH 466 (1062)
T ss_pred CceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhccc
Confidence 011112222111 1222 35788999999999999999998888888
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEee---------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRA---------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
. +.|.++.|....+++-.+. ..+.+.+-|+++|.... +....+. ...+|+.+..
T Consensus 467 t----------~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~-fR~l~~~------despI~~irv 529 (1062)
T KOG1912|consen 467 T----------SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR-FRGLQKP------DESPIRAIRV 529 (1062)
T ss_pred c----------cceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc-cccCCCC------CcCcceeeee
Confidence 7 7888998887766554432 23567888998875432 1111111 1678999999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE-------Eee--cCCC-----------------------
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST-------IVY--EPHR----------------------- 554 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~--~~h~----------------------- 554 (762)
|.-|+|++..- .+.-+.+||+++......... ..+ ..|+
T Consensus 530 S~~~~yLai~F---------r~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~ 600 (1062)
T KOG1912|consen 530 SSSGRYLAILF---------RREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSV 600 (1062)
T ss_pred cccCceEEEEe---------cccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccc
Confidence 99999999998 677888888865433211100 000 0000
Q ss_pred CCceE---------------------------EEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 555 DAGIS---------------------------AVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 555 ~~~v~---------------------------~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
...+. .++| .+..++.|..+|.+.+||+.......... ...+
T Consensus 601 es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d---------~p~~ 669 (1062)
T KOG1912|consen 601 ESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRD---------SPDP 669 (1062)
T ss_pred cchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccC---------CCCc
Confidence 00011 1112 14478999999999999986543333211 1112
Q ss_pred CCCeEEEEEcC-CCcEEEEEcCCeEEEEeCCCCeEEEEeccccCc--eeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 608 KKAMTAAAFSA-DGSVLAVAAETVITLWDPDRNVLVAVIGETLTP--IMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 608 ~~~i~~~~~s~-dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~--v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
........+-| |++.++.-.| -+-+||.+....+..+.|-... +..+.|......++. .|.+ +++-.+....
T Consensus 670 ra~~l~~~~ipG~~~~lvl~~d-~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~--~d~~--~Rf~~m~mks 744 (1062)
T KOG1912|consen 670 RAHSLTFPQIPGDHTTLVLELD-WLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLP--NDNK--ERFRVMPMKS 744 (1062)
T ss_pred hhhheecccCCCCceEEEEecC-cceecccccceeeeeeccCCcceEEEEEEecccCceecC--CCCc--eeEEeccccC
Confidence 22222333334 4444443334 4789999988888888655444 444555444333333 3335 6655554433
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=4e-15 Score=154.75 Aligned_cols=236 Identities=12% Similarity=-0.005 Sum_probs=161.4
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec---CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA---DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
..|.++|.+......+......+...+|||||+.|+..+. +..+++|++.+++..... ... +....
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~----------~~~~~ 247 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP----------RHNGA 247 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC----------CCcCC
Confidence 4799999988777666667778999999999999987643 347999999887643322 211 33456
Q ss_pred EEEeCCCCEEEEee-cCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCce
Q 040987 452 IAFNHDGGLVALRA-ENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSL 528 (762)
Q Consensus 452 ~~~s~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d 528 (762)
+.|+|||+.|+... .+| .|++||+.+++.. .+... ...+....|+|||+.|+..+.+ + +.
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~----------~~~~~~~~wSPDG~~I~f~s~~----~--g~ 310 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDG----------RSNNTEPTWFPDSQNLAYTSDQ----A--GR 310 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCC----------CCCcCceEECCCCCEEEEEeCC----C--CC
Confidence 89999999888753 344 5899999876532 22111 2346788999999999887621 0 11
Q ss_pred eEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccccccccccCCceeeeeecc
Q 040987 529 VCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 529 ~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
..|.++|+.++.. ..+. .+ ........|+|||++|+..+.+ ..|.+||+.++.......
T Consensus 311 ~~Iy~~d~~~g~~-~~lt-----~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~----------- 372 (429)
T PRK03629 311 PQVYKVNINGGAP-QRIT-----WE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD----------- 372 (429)
T ss_pred ceEEEEECCCCCe-EEee-----cC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-----------
Confidence 2555556665543 2221 12 3345678999999999887654 358889998775432211
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-CC---eEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-ET---VITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d~---~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
........|+|||++|+.++ ++ .+.+++++ |+....+.+|.+.+...+|+|
T Consensus 373 --~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 373 --TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 11234678999999998886 53 47788885 555667777888899999998
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.5e-14 Score=131.54 Aligned_cols=317 Identities=15% Similarity=0.125 Sum_probs=191.8
Q ss_pred CCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-CcEEEEeecCCeEEEEeccC
Q 040987 235 MKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT-QRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vw~~~~ 312 (762)
...+..++|++.-.-+| ++.|..|++|+-...... .........|+|++|-|. ++.|+.|+..| |.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt-----~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~ 171 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPT-----KLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSR 171 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCc-----eecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCc
Confidence 44678889998444444 458999999998874332 334445678999999995 45777777655 99998643
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccC
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLP 391 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~ 391 (762)
........ .........+..-.+| ..|+++.|.+||..+++++. |..|.+||.+++..+.+.
T Consensus 172 tln~~r~~----------------~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 172 TLNANRNI----------------RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred cccccccc----------------ccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence 21111000 0000011122233445 68999999999999999885 478999999999988766
Q ss_pred -CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceE
Q 040987 392 -RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 392 -~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
...+.+.-+.|||||.+|++++-|+..++|+....-......... +.|...+|+|+|++|+..... .-
T Consensus 235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs----------grvqtacWspcGsfLLf~~sg-sp 303 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS----------GRVQTACWSPCGSFLLFACSG-SP 303 (445)
T ss_pred ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC----------CceeeeeecCCCCEEEEEEcC-Cc
Confidence 455678899999999999999999999999655422222221112 688999999999988776432 23
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE-EEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS-TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
++|.+. |......+. .++ .....-+-|+..-..... +
T Consensus 304 ~lysl~-----------------------------f~~~~~~~~~~~~---------~k~~lliaDL~e~ti~ag-~--- 341 (445)
T KOG2139|consen 304 RLYSLT-----------------------------FDGEDSVFLRPQS---------IKRVLLIADLQEVTICAG-Q--- 341 (445)
T ss_pred eEEEEe-----------------------------ecCCCccccCccc---------ceeeeeeccchhhhhhcC-c---
Confidence 344432 221111100 111 112222333321110000 0
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCC--------cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC---
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGG--------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA--- 618 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--- 618 (762)
.-- .+.+.+++|.|.|.+||+.-..+ .|.+||........... |-.. .......+.|+|
T Consensus 342 -~l~-cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~-----cg~i---~ge~P~~IsF~pl~n 411 (445)
T KOG2139|consen 342 -RLC-CGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY-----CGMI---GGEYPAYISFGPLKN 411 (445)
T ss_pred -ccc-cCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe-----cccc---cCCCCceEEeeeccc
Confidence 001 45778999999999999876443 35567665433322210 1111 122244566665
Q ss_pred CCcEEEEE-cCCeEEEEeCC
Q 040987 619 DGSVLAVA-AETVITLWDPD 637 (762)
Q Consensus 619 dg~~la~~-~d~~i~iwd~~ 637 (762)
+|.+|.++ +-|.+.-|++.
T Consensus 412 ~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCcEEEEEeccCceEeeeeE
Confidence 56777776 37777777654
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=4.9e-15 Score=155.07 Aligned_cols=233 Identities=18% Similarity=0.157 Sum_probs=159.0
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
..|.+||........+..|...+.+ ++|||||+.||+.+ + ..|.+||+.+++.. .+..+.+...+++|+|||+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~-p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILS-PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECCCCCCceEeecCCCcccc-ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCC-
Confidence 4688999988777888888888887 99999999999987 2 47999999887653 3444455566889999995
Q ss_pred ccceeeeEEeeecCC--eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccC
Q 040987 129 ATKILSYCWTASLDG--TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKE 206 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~--~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (762)
.++++.+.++ .|.+||+.+++... +.
T Consensus 261 -----~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt---------------------------------------------- 288 (433)
T PRK04922 261 -----RLALTLSRDGNPEIYVMDLGSRQLTR-LT---------------------------------------------- 288 (433)
T ss_pred -----EEEEEEeCCCCceEEEEECCCCCeEE-Cc----------------------------------------------
Confidence 3444555555 58888887765322 11
Q ss_pred CCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe--CC--eEEEEEccCchhhhheeeeeeeccCc
Q 040987 207 PRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--QR--KLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 207 ~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~~--~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
.+......++|+|||+.|+... ++ .|+++++.+++.. .+. .+..
T Consensus 289 --------------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-----~lt-~~g~ 336 (433)
T PRK04922 289 --------------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-----RLT-FQGN 336 (433)
T ss_pred --------------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-----Eee-cCCC
Confidence 1122234578999999998553 23 4777777766542 222 2333
Q ss_pred CeEEEEEcCCCcEEEEeecCC---eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 283 KLTVLAFHPTQRIVAAGDVTG---RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
....++|+|||++++..+.++ .|.+||+.+++.. .+. +.......
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-------------------------------~Lt-~~~~~~~p 384 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-------------------------------TLT-PGSLDESP 384 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-------------------------------ECC-CCCCCCCc
Confidence 455789999999998765433 6899998665422 111 11123457
Q ss_pred EEecCCCEEEEEecC---CeEEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 360 IFSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 360 ~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
.|+|||+.++..+.+ +.|.++++..+....+....+.+...+|+|
T Consensus 385 ~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 385 SFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 899999998877653 468888987665555555556677777776
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.4e-15 Score=145.50 Aligned_cols=231 Identities=15% Similarity=0.250 Sum_probs=164.9
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--CCcEEEEeecCCeE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--TQRIVAAGDVTGRI 305 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~v 305 (762)
..+.+|.+.|+++.|+.||.+|++| +|..+.|||.-..+ ....+..+|.+.|.++.|-| +.+.+++|..|..|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcc----eeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 5678999999999999999999977 67889999998655 45677889999999999999 56689999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~ 384 (762)
+++|+...+.-.... .-.+....+..|...|..++..|++ +.+.+++.||+|+-+|++.
T Consensus 120 ~lfdl~~~~~~~~d~--------------------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDH--------------------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEeccccccccccc--------------------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 999986532111000 0113346677899999999999998 7889999999999999986
Q ss_pred Ccee-----------ccCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCCc--------e----------EEEEEc-
Q 040987 385 GKKK-----------FLPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPSM--------E----------IIRSIS- 433 (762)
Q Consensus 385 ~~~~-----------~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~--------~----------~~~~~~- 433 (762)
...- .....--...++.++|. ..+|++|+.+-..++||.+.. . +++.+.
T Consensus 180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p 259 (758)
T KOG1310|consen 180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP 259 (758)
T ss_pred CccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence 3320 01111135678889985 467899999999999994321 0 111111
Q ss_pred cCC-CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceee
Q 040987 434 GIK-LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483 (762)
Q Consensus 434 ~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 483 (762)
+|. .+.......-.-++-++|+|+|.-|++.-....|+++|+..++....
T Consensus 260 ~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 260 GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 111 00000000011246688999999888877777899999987765443
No 217
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=7.2e-17 Score=163.44 Aligned_cols=288 Identities=11% Similarity=0.113 Sum_probs=220.8
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
+.++.+.+|...|+|+.|...|.++++|+.|..++||..+++.+. ...+|.+.++.++.+.+..++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 345678899999999999999999999999999999999998875 5788999999999999999999999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+..+.++..+.+|. +.|++++|+|-. +.+.||++++||.+-.. .....+...+. ...-+.
T Consensus 261 l~~~~pvsvLrght----------gavtaiafsP~~----sss~dgt~~~wd~r~~~----~~y~prp~~~~--~~~~~~ 320 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHT----------GAVTAIAFSPRA----SSSDDGTCRIWDARLEP----RIYVPRPLKFT--EKDLVD 320 (1113)
T ss_pred cCCCchHHHHhccc----------cceeeeccCccc----cCCCCCceEeccccccc----cccCCCCCCcc--ccccee
Confidence 99999999999998 899999999964 67899999999987211 11111111111 134567
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC-CeEEEEeCCCcEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR-RAAVSSSYGGDFKV 581 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~i~i 581 (762)
.+.|...+..+++++ .++.-..|....... + ...+.-+.++.|- .+.+++-.+-.+.+
T Consensus 321 s~~~~~~~~~f~Tgs---------~d~ea~n~e~~~l~~-----------~-~~~lif~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGS---------RDGEARNHEFEQLAW-----------R-SNLLIFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred eeecccccccccccc---------CCcccccchhhHhhh-----------h-ccceEEEeccccccccceeeeeeeEeee
Confidence 778888888889988 677777776553221 1 2222222233222 45666667788999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEE-EEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLA-VAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la-~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
|++.++...... .+|...+..+.++|-...++ +++ ||...|||+-.|.+++...-..+.+..-.||+
T Consensus 380 wnl~~g~l~H~l-----------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSq 448 (1113)
T KOG0644|consen 380 WNLYTGQLLHNL-----------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQ 448 (1113)
T ss_pred eecccchhhhhh-----------cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCC
Confidence 999999877665 36889999999999776665 445 99999999999977765543345677889999
Q ss_pred CCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 660 SSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
||..++....-|. ++|.....++.
T Consensus 449 dgts~~lsd~hgq--l~i~g~gqs~s 472 (1113)
T KOG0644|consen 449 DGTSIALSDDHGQ--LYILGTGQSKS 472 (1113)
T ss_pred CCceEecCCCCCc--eEEeccCCCcc
Confidence 9999988866665 88887665543
No 218
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.69 E-value=7.9e-13 Score=133.74 Aligned_cols=299 Identities=19% Similarity=0.226 Sum_probs=187.9
Q ss_pred EEEEecC----CeEEEEec--CCCceec--cCCCCCCeEEEEeCCCCCeEEEEec----CCcEEEEEcCCc--eE--EEE
Q 040987 368 LYSGGKE----GVLVVWQL--DTGKKKF--LPRIGSPLLYFTESPDPSLSSISCA----DNQVHLLKMPSM--EI--IRS 431 (762)
Q Consensus 368 l~s~~~d----g~i~~wd~--~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~i~d~~~~--~~--~~~ 431 (762)
++.|+.. +.|++|++ ++++... ..........++++|++++|++... .+.|..|++... ++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3444444 67888877 4555432 2224455677899999999999877 468888887763 32 222
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeec----ccccCCCCcceeEEEEEE
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCE----RNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 506 (762)
..... .....++++|++++|+++. .+|.+.++++.....+....... .+..+.........++.|
T Consensus 82 ~~~~g----------~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 82 VPSGG----------SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEESS----------SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred eccCC----------CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence 22111 3557899999999998886 58999999998754443332111 011111112455789999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICN 585 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~ 585 (762)
+|||+++++.+. +...|.+|++...............+. ...-+.++|+|++++++... .+++|.++++.
T Consensus 152 ~pdg~~v~v~dl--------G~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 152 SPDGRFVYVPDL--------GADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp -TTSSEEEEEET--------TTTEEEEEEE-TTS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCCEEEEEec--------CCCEEEEEEEeCCCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 999999998874 456899999987763221111111233 56778999999999887665 46789999988
Q ss_pred --cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCC--CC--eEEEEeccccCceeEEEE
Q 040987 586 --DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPD--RN--VLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 586 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~--~~--~~~~~l~~~~~~v~~~~~ 657 (762)
++...... .................++++|||++|.++. ++.|.+|+++ ++ +.+..+......-+.+++
T Consensus 223 ~~~g~~~~~~---~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 223 PSDGSLTEIQ---TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp TTTTEEEEEE---EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred ccCCceeEEE---EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 33221111 0001101111123678999999999999886 7899999993 34 334444333334789999
Q ss_pred eCCCCEEEEEEcCCCCeEEEEEC--CCCceeeEE
Q 040987 658 VGSSEYLVATSWGSKPQLSVWNM--SKLSISWSY 689 (762)
Q Consensus 658 s~dg~~l~s~~~d~~~~v~vwd~--~~~~~~~~~ 689 (762)
+|||++|+++..+. +.|.+|++ ++|.+...-
T Consensus 300 s~~g~~l~Va~~~s-~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 300 SPDGRYLYVANQDS-NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp -TTSSEEEEEETTT-TEEEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEecCC-CeEEEEEEeCCCCcEEEec
Confidence 99999999998766 35998876 567665543
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5e-16 Score=148.19 Aligned_cols=315 Identities=15% Similarity=0.130 Sum_probs=227.7
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
...+..|.+.|+.+.|...|..|++|+.|..|.+||....+.. ..-..+|.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-----------------------------l~f~SGH~ 185 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-----------------------------LSFESGHC 185 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc-----------------------------cccccccc
Confidence 3566789999999999999999999999999999998665432 23446788
Q ss_pred cceeEEEEecC--CCEEEEEecCCeEEEEecCCCce----eccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCc
Q 040987 354 SEVSVLIFSSD--GAYLYSGGKEGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 354 ~~v~~~~~s~~--g~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~ 426 (762)
..|....|-|. .+.+++++.||++++=.+..... ..+..|.+++..++.-|+. .-|++++.|+.+.-+|++.+
T Consensus 186 ~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 186 NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence 88888888773 46799999999999877654332 3577889999999998876 45778889999999999887
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceee---EEeecccccCCCCcceeEE
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISE---VQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~v~ 502 (762)
.+...+....... ...-....++..|... .+++++.|..+++||.+.-..-.. +......|.. .+....|+
T Consensus 266 ~pa~~~~cr~~~~----~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~-~d~~v~IT 340 (559)
T KOG1334|consen 266 VPAEKFVCREADE----KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV-EDDPVNIT 340 (559)
T ss_pred CccceeeeeccCC----ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc-ccCcccce
Confidence 6655554222111 0012567888888654 799999999999999865332110 1111111111 13356799
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc--------eeEEEEEeecCCCC-CceEEEE-EcCCCCeEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK--------EFTLSTIVYEPHRD-AGISAVA-FHPNRRAAVS 572 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~h~~-~~v~~~~-~spd~~~l~~ 572 (762)
+++|+.++.-|.++- .|-.|+++.-.-+.. .......+++||+. ..|..+- |-|...++++
T Consensus 341 gl~Ysh~~sElLaSY---------nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS 411 (559)
T KOG1334|consen 341 GLVYSHDGSELLASY---------NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS 411 (559)
T ss_pred eEEecCCccceeeee---------cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEe
Confidence 999997776665555 677888885443222 11222334678842 2355664 5678899999
Q ss_pred EeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEE
Q 040987 573 SSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLV 642 (762)
Q Consensus 573 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~ 642 (762)
|+.=|.|.||+-.+++.+..++ +...-|+|+.=+|--..||+.+ |..|+||...+.+..
T Consensus 412 GSDCGhIFiW~K~t~eii~~Me-----------gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 412 GSDCGHIFIWDKKTGEIIRFME-----------GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred cCccceEEEEecchhHHHHHhh-----------cccceEeccCCCCCCchhhccCCccceeeecCCccccc
Confidence 9999999999999999888774 3445889999999999999999 999999988655433
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.2e-16 Score=151.42 Aligned_cols=267 Identities=12% Similarity=0.155 Sum_probs=215.2
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
-..+.+.++.+|++++.++..|.|..+|..+++..........|..+.|-.+.+++|++ ....++|||-. |..++.+.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk 207 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLK 207 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehh
Confidence 34577899999999999999999999999999998888888889999999988888887 78899999976 77777777
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
.+ ..|..+.|.|-.-+|++++..|.+..-|+.+|+.+..+... .+.+..+.-+|-+-.+
T Consensus 208 ~~-----------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~----------~G~~~vm~qNP~NaVi 266 (545)
T KOG1272|consen 208 RH-----------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG----------AGRTDVMKQNPYNAVI 266 (545)
T ss_pred hc-----------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc----------CCccchhhcCCccceE
Confidence 65 47889999999889999999999999999999988877553 5567788888988888
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
-+|. ..|+|.+|.....+.+..+ ..| .+.|.++++.++|+|+|+.+.|..++|||++........
T Consensus 267 h~Gh---------snGtVSlWSP~skePLvKi-----LcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 267 HLGH---------SNGTVSLWSPNSKEPLVKI-----LCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred EEcC---------CCceEEecCCCCcchHHHH-----Hhc-CCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 8888 8899999999998887666 458 999999999999999999999999999999987755444
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe-CCCCe--EEEEeccc--cCceeEEEEeCCCCEEEEEE
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD-PDRNV--LVAVIGET--LTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd-~~~~~--~~~~l~~~--~~~v~~~~~s~dg~~l~s~~ 668 (762)
. .......++||.-| +||.+-...|.||. .-.+. .-...-.| .++|.++.|.|-...|-.+-
T Consensus 332 ~------------tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 332 R------------TPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred e------------cCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 1 13456678887655 66666667899994 33221 11111112 34699999999777777766
Q ss_pred cCC
Q 040987 669 WGS 671 (762)
Q Consensus 669 ~d~ 671 (762)
..|
T Consensus 399 ~~G 401 (545)
T KOG1272|consen 399 AGG 401 (545)
T ss_pred cCC
Confidence 655
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=2.7e-15 Score=144.92 Aligned_cols=205 Identities=12% Similarity=0.132 Sum_probs=148.2
Q ss_pred eCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE
Q 040987 455 NHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 455 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
.|.+--++++-.-|.+++.|....+ +..+....+.. ....++++.|-|.+..++.... .++.+++|
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i-----~ktsvT~ikWvpg~~~~Fl~a~--------~sGnlyly 247 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLI-----NKSSVTCIKWVPGSDSLFLVAH--------ASGNLYLY 247 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhH-HHHhhhhcccc-----cccceEEEEEEeCCCceEEEEE--------ecCceEEe
Confidence 3456678888888999999887632 22211111111 0567999999996654444432 67888888
Q ss_pred EecCCCc-----------eeEEEEE------------eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc
Q 040987 535 VSGTQNK-----------EFTLSTI------------VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 535 d~~~~~~-----------~~~~~~~------------~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
|..-... ...+... .+.-- .+.|+..+|+|||++||+.+.||.+||||..+.+++.
T Consensus 248 ~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 248 DKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred eccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence 6532100 0000000 00111 4578999999999999999999999999999888776
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC-----------
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG----------- 659 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~----------- 659 (762)
..+ ..-+...|++|||||+||++|+ |.-|.||.+..++.++.-++|.+.|..++|.|
T Consensus 327 ~mk-----------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~ 395 (636)
T KOG2394|consen 327 VMK-----------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNF 395 (636)
T ss_pred HHH-----------hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccccc
Confidence 653 2347889999999999999999 99999999999999999999999999999982
Q ss_pred ------------------------CC-------------CEEEEEEcCCCCeEEEEECCCCceee
Q 040987 660 ------------------------SS-------------EYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 660 ------------------------dg-------------~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
++ -++.+.+.|.. +++||+....+..
T Consensus 396 ~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTq--lcLWDlteD~L~~ 458 (636)
T KOG2394|consen 396 SGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQ--LCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccce--EEEEecchhhccc
Confidence 01 25777888887 9999998765544
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.6e-14 Score=151.48 Aligned_cols=216 Identities=13% Similarity=0.058 Sum_probs=153.4
Q ss_pred cccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE----eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEE
Q 040987 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR----KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 288 (762)
...|.++|.+..... .+..+...+...+|+|||+.|+.. .+..|.+||+.+++.. ....+.+.+.+.+
T Consensus 181 ~~~l~~~d~dg~~~~--~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~------~l~~~~g~~~~~~ 252 (435)
T PRK05137 181 IKRLAIMDQDGANVR--YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE------LVGNFPGMTFAPR 252 (435)
T ss_pred ceEEEEECCCCCCcE--EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE------EeecCCCcccCcE
Confidence 458889998655443 556677889999999999999854 2468999999887642 3345566778899
Q ss_pred EcCCCcEEEE-eecCCe--EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 289 FHPTQRIVAA-GDVTGR--ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 289 ~sp~~~~l~~-~~~dg~--v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
|+|||+.|+. .+.++. |++||+.+++. ..+..+........|+|||
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-------------------------------~~Lt~~~~~~~~~~~spDG 301 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-------------------------------TRLTDSPAIDTSPSYSPDG 301 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCce-------------------------------EEccCCCCccCceeEcCCC
Confidence 9999998764 445554 77778765532 2344455556678999999
Q ss_pred CEEEEEecC---CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCC
Q 040987 366 AYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 366 ~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+.|+..+.. ..|+++|+.+++...+......+....|+|||+.|+....+ ..|.+||+.++.. +.+.. .
T Consensus 302 ~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~--- 376 (435)
T PRK05137 302 SQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-G--- 376 (435)
T ss_pred CEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-C---
Confidence 998877642 36889999887776655555566778999999999887653 3588888765443 33322 1
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecC------ceEEEEEcCCCC
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIHFYSLLDDR 479 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~ 479 (762)
..+..+.|+|||+.|+..+.+ ..++++|+..+.
T Consensus 377 -------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 377 -------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred -------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 235678999999998876543 357888886543
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=2.2e-14 Score=129.88 Aligned_cols=257 Identities=14% Similarity=0.202 Sum_probs=186.6
Q ss_pred CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce---EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce
Q 040987 393 IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME---IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC 469 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 469 (762)
...+|+|.+|++|+..++++.....+.||.....+ ..++++.|. ..|+.+.|+|..+.|++++.|..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd----------~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD----------KIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC----------cceeEEeecCCCCceeEccCCCC
Confidence 45789999999999999999999999999987654 566677665 78899999999999999999999
Q ss_pred EEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 470 IHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 470 i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
-++|....+. -..++..... ....+++.|+|.++.+|+++ +-..|.||-++....-.. ...
T Consensus 79 ayVw~~~~~~~WkptlvLlRi--------NrAAt~V~WsP~enkFAVgS---------gar~isVcy~E~ENdWWV-sKh 140 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRI--------NRAATCVKWSPKENKFAVGS---------GARLISVCYYEQENDWWV-SKH 140 (361)
T ss_pred ccccccCCCCeeccceeEEEe--------ccceeeEeecCcCceEEecc---------CccEEEEEEEecccceeh-hhh
Confidence 9999984433 2222222211 66799999999999999999 778888888876544321 112
Q ss_pred eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeee-------ecccCCCCeEEEEEcCCCc
Q 040987 549 VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHA-------VGSYKKKAMTAAAFSADGS 621 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~s~dg~ 621 (762)
+-.++ ...|+++.|+|++-+|+.|+.|+..+|+..--...........|.... ......+.+..+.|+|+|.
T Consensus 141 ikkPi-rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 141 IKKPI-RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hCCcc-ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 23456 788999999999999999999999999875322211111111222111 1114568999999999999
Q ss_pred EEEEEc-CCeEEEEeCCCCe-EEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 622 VLAVAA-ETVITLWDPDRNV-LVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 622 ~la~~~-d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.|+-.+ |..+.+-|..... .+..+....-+..++.|-.+. .++.++.|..-.+...+
T Consensus 220 ~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDCGPVLFVTD 278 (361)
T ss_pred EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCCCceEEEec
Confidence 999887 9999999988775 344443344678888888764 46666666332344433
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.1e-14 Score=152.33 Aligned_cols=214 Identities=13% Similarity=0.094 Sum_probs=149.2
Q ss_pred cccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccCcCeEEEE
Q 040987 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 288 (762)
...|.+||....... .+..+...+...+|+|||+.|+... ...|++||+.+++.. ......+...+++
T Consensus 183 ~~~l~i~D~~g~~~~--~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~------~l~~~~g~~~~~~ 254 (433)
T PRK04922 183 RYALQVADSDGYNPQ--TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE------LVASFRGINGAPS 254 (433)
T ss_pred eEEEEEECCCCCCce--EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE------EeccCCCCccCce
Confidence 457999998654433 4555677899999999999998542 357999999887642 2223344556889
Q ss_pred EcCCCcEEEE-eecCC--eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 289 FHPTQRIVAA-GDVTG--RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 289 ~sp~~~~l~~-~~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
|+|||+.|+. .+.+| .|++||+.+++. ..+..+......++|+|||
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-------------------------------~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQL-------------------------------TRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCe-------------------------------EECccCCCCccceEECCCC
Confidence 9999998764 44555 599999876542 2333444445678999999
Q ss_pred CEEEEEec-CC--eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCC
Q 040987 366 AYLYSGGK-EG--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 366 ~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
++|+..+. ++ .|+++|+.+++...+.........++|+|||+.|+....++ .|.+||+.+++.. .+...
T Consensus 304 ~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~---- 378 (433)
T PRK04922 304 KSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG---- 378 (433)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC----
Confidence 99887764 33 47778888777655444444455789999999998875543 5999999887654 33221
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCC
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLD 477 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~ 477 (762)
.......|+|||++++..+.+ +.|.++++..
T Consensus 379 -------~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 379 -------SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -------CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 123467899999998887653 4677888754
No 225
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.5e-14 Score=140.39 Aligned_cols=345 Identities=13% Similarity=0.161 Sum_probs=223.8
Q ss_pred EEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceee
Q 040987 55 CRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILS 134 (762)
Q Consensus 55 i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~ 134 (762)
...|+........+....+.-..-+.|||-|.||++-.-.-|.+|-=++-..++.|. |.+ |.-+.|||.. +
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~E-------k 262 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HPG-VQFIDFSPNE-------K 262 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccceeeecCccHHHHHhcc-CCC-ceeeecCCcc-------c
Confidence 467876654444444444443334889999999999998779999877666677664 665 9999999999 7
Q ss_pred eEEeeecC-----------CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCC
Q 040987 135 YCWTASLD-----------GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSH 203 (762)
Q Consensus 135 ~l~s~s~d-----------~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (762)
||+|-+.. ..++|||+.+|...+.+....
T Consensus 263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~---------------------------------------- 302 (698)
T KOG2314|consen 263 YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK---------------------------------------- 302 (698)
T ss_pred eEEEecCCccccCcccCCCceEEEEEccccchhcceeccC----------------------------------------
Confidence 99987643 356777777777666554210
Q ss_pred ccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 204 KKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 204 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
.....-.-+.||.|++|+|.-....|.||+....... ....-.-.+
T Consensus 303 -----------------------------~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~ll-----d~Kslki~g 348 (698)
T KOG2314|consen 303 -----------------------------SPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLL-----DKKSLKISG 348 (698)
T ss_pred -----------------------------CCccccceEEeccCCceeEEeccceEEEEecCceeee-----cccccCCcc
Confidence 1111123468999999999766689999998875543 222223457
Q ss_pred eEEEEEcCCCcEEEEeec-----CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 284 LTVLAFHPTQRIVAAGDV-----TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
|....|+|.++.||.-.. -..+.+-.+.+++.+ ++-.-|.-.-..
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i------------------------------Rt~nlfnVsDck 398 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI------------------------------RTKNLFNVSDCK 398 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCcceEEEEecCcccee------------------------------eeccceeeeccE
Confidence 889999999888875432 124555555444332 222223333345
Q ss_pred EEEecCCCEEEEEe----------cCCeEEEEecCCCce-eccCCCCCCeEEEEeCCCCCeEEEEec---CCcEEEEEcC
Q 040987 359 LIFSSDGAYLYSGG----------KEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCA---DNQVHLLKMP 424 (762)
Q Consensus 359 ~~~s~~g~~l~s~~----------~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~~ 424 (762)
+.|-.+|.+|+.-- .-..+.++.++.... +........+...+|-|.|..+++-+. ..++.+|.++
T Consensus 399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 66777888877421 112355666554443 345566788999999999998876543 3578888887
Q ss_pred C-c---eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCceEEEEEcCCCC--ceeeEEeecccccCCC
Q 040987 425 S-M---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENYCIHFYSLLDDR--GISEVQVCERNHQPGD 495 (762)
Q Consensus 425 ~-~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~ 495 (762)
+ . +++..+.. ...+.+.|+|.|++++++. ..|.+.++|+.-.. ......
T Consensus 479 ~~~~~~~lVk~~dk------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e---------- 536 (698)
T KOG2314|consen 479 TNIKKPSLVKELDK------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE---------- 536 (698)
T ss_pred cCCCchhhhhhhcc------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc----------
Confidence 4 2 22222222 3567899999999988764 56899999987421 111111
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
....+.+.|.|.|+|+++++... ..+.|..-++|+.+..
T Consensus 537 --h~~at~veWDPtGRYvvT~ss~w---rhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 537 --HFAATEVEWDPTGRYVVTSSSSW---RHKVDNGYRIFTFQGR 575 (698)
T ss_pred --ccccccceECCCCCEEEEeeehh---hhccccceEEEEeecH
Confidence 23467899999999999987321 1124555677776654
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.2e-14 Score=149.58 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=142.0
Q ss_pred cccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccCcCeEEEE
Q 040987 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 288 (762)
...|.++|.+ |... .....+...+.+.+|+|||+.|+... ...|.+||+.+++.. .+....+.+.+.+
T Consensus 175 ~~~L~~~D~d-G~~~-~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~------~l~~~~g~~~~~~ 246 (427)
T PRK02889 175 RYQLQISDAD-GQNA-QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR------VVANFKGSNSAPA 246 (427)
T ss_pred ccEEEEECCC-CCCc-eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE------EeecCCCCccceE
Confidence 4567888874 3333 23456677899999999999998543 246999999988643 2223345567899
Q ss_pred EcCCCcEEEE-eecCCeEEEEecc--CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 289 FHPTQRIVAA-GDVTGRILIWRGF--GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 289 ~sp~~~~l~~-~~~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
|+|||+.|+. .+.+|...||.+. ++. ...+..+........|+|||
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-------------------------------~~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-------------------------------LRRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCC-------------------------------cEECCCCCCCCcCeEEcCCC
Confidence 9999998874 5677776777643 221 23344444455678899999
Q ss_pred CEEEEEec-CCeEEEE--ecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCC
Q 040987 366 AYLYSGGK-EGVLVVW--QLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 366 ~~l~s~~~-dg~i~~w--d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
++|+..+. ++...+| ++.+++...+...........|+|||++|+..+.++ .|.+||+.+++.......
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~----- 370 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT----- 370 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-----
Confidence 99887654 3444444 555555443333333345688999999999877654 599999988765433221
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCc---eEEEEEc
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENY---CIHFYSL 475 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~ 475 (762)
.......|+|||+.|+..+.++ .+.+.+.
T Consensus 371 -------~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 371 -------TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred -------CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 1235689999999998887553 4556666
No 227
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=2.1e-14 Score=147.86 Aligned_cols=276 Identities=17% Similarity=0.198 Sum_probs=190.5
Q ss_pred CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCC
Q 040987 256 RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEER 334 (762)
Q Consensus 256 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (762)
+.+.+|++...... .........|.++.|+| +..++|.|..+|.|.+||+.......
T Consensus 222 ~~~~vW~~~~p~~P-----e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------------- 279 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTP-----ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------------- 279 (555)
T ss_pred ceEEEEecCCCCCc-----eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------------
Confidence 47999999987433 44445678999999999 56678888999999999997664310
Q ss_pred CCcccCCccccceeeeccccceeEEEEecCC--CEEEEEecCCeEEEEecCCCcee------c-cC------CCCCCeEE
Q 040987 335 PGVRDNDDADLCTTWHWHPSEVSVLIFSSDG--AYLYSGGKEGVLVVWQLDTGKKK------F-LP------RIGSPLLY 399 (762)
Q Consensus 335 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~i~~wd~~~~~~~------~-~~------~~~~~v~~ 399 (762)
..........|..++..+.|..+. .-+++++.||.|..|+++.-... . .. .....+++
T Consensus 280 -------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~ 352 (555)
T KOG1587|consen 280 -------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATS 352 (555)
T ss_pred -------CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceee
Confidence 001123345689999999997644 44999999999999987753320 0 01 12236788
Q ss_pred EEeCC-CCCeEEEEecCCcEEEEEcCCceEE--EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC
Q 040987 400 FTESP-DPSLSSISCADNQVHLLKMPSMEII--RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 400 ~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
+.|.+ +-..+++|+..|.|..-.....+.. ..++++. ....|.+.|..+.++|=+..++..+.|-++++|...
T Consensus 353 ~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~----~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 353 LKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS----TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred EeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc----cccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence 88877 4567888999998887443322111 1222221 122345899999999977666655569999999987
Q ss_pred -CCCceeeEEeecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 477 -DDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 477 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
...++..+... ...+++++|||... .++++. .+|.+.+||+........... ..+
T Consensus 429 ~~~~Pl~~~~~~----------~~~v~~vaWSptrpavF~~~d---------~~G~l~iWDLl~~~~~Pv~s~---~~~- 485 (555)
T KOG1587|consen 429 VIASPLLSLDSS----------PDYVTDVAWSPTRPAVFATVD---------GDGNLDIWDLLQDDEEPVLSQ---KVC- 485 (555)
T ss_pred CCCCcchhhhhc----------cceeeeeEEcCcCceEEEEEc---------CCCceehhhhhccccCCcccc---ccc-
Confidence 44433333221 45599999999765 555555 899999999976544322221 122
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
....+.+.|+++|+.|++|...|++.+|++...
T Consensus 486 ~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 486 SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 446678899999999999999999999999643
No 228
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.67 E-value=1.4e-13 Score=132.76 Aligned_cols=346 Identities=14% Similarity=0.171 Sum_probs=235.0
Q ss_pred eeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCC-----
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG----- 303 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----- 303 (762)
.......-++..+++||.|.+|++.....|.+|.-...... ..-....|..+.|||++++|.+-+..+
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l-------~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL-------VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred ccccccCcchhheeecCcchheehhhccceEEccccchhhe-------eeeecCCceecccCcccceeeeeccCCccChh
Confidence 33333566889999999999999998889999998877632 222335799999999999999865433
Q ss_pred ----------eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc--ee-EEEEecCCCEEEE
Q 040987 304 ----------RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE--VS-VLIFSSDGAYLYS 370 (762)
Q Consensus 304 ----------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~s~~g~~l~s 370 (762)
.+.+||+.++..+. .+.....+ .+ -+.|+-+.++++-
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~------------------------------sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVF------------------------------SFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred hccCCccccCceeEEeccCceeEe------------------------------eccccCCcccccceeeeeecchhhhh
Confidence 48999988876543 22222222 33 5788888887775
Q ss_pred EecCCeEEEEecCCCceecc--CCC-CCCeEEEEeCCCCC--eEEEE-----ecCCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 371 GGKEGVLVVWQLDTGKKKFL--PRI-GSPLLYFTESPDPS--LSSIS-----CADNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~--~~~-~~~v~~~~~s~~~~--~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
.. ...++++++ ++..... ... ...+....|+|.++ -|++- ...+.+++|.+..+..+.+-.-.+
T Consensus 149 vv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk---- 222 (561)
T COG5354 149 VV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK---- 222 (561)
T ss_pred hc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe----
Confidence 53 357999997 4443221 111 25688888998643 34442 346689999988766655432222
Q ss_pred CCCcccCceeeEEEeCCCCEEEEee-----------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRA-----------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
..-..+.|.+.|++|++-. ....++++++......... +..++|..++|.|+
T Consensus 223 ------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-----------~~~~pVhdf~W~p~ 285 (561)
T COG5354 223 ------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-----------DLKDPVHDFTWEPL 285 (561)
T ss_pred ------ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-----------cccccceeeeeccc
Confidence 1225688899888776432 2246788887643322221 11678999999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICND 586 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~ 586 (762)
++.+++.+.- ....+.++|++.. ...-+. ...-+.+.|+|.+++++.++-| |.+.+||..+
T Consensus 286 S~~F~vi~g~-------~pa~~s~~~lr~N-l~~~~P--------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 286 SSRFAVISGY-------MPASVSVFDLRGN-LRFYFP--------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred CCceeEEecc-------cccceeecccccc-eEEecC--------CcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 9998887622 5678899999876 332221 3345668899999999998765 6799999876
Q ss_pred ccccc-cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-------CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 587 ELQQK-DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-------ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 587 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
..... .+ .....+-+.|||||+++.+.. |..|.|||+...... ..+.+.|.
T Consensus 350 rf~~~~~~-------------~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~ 408 (561)
T COG5354 350 RFKVAGAF-------------NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWD 408 (561)
T ss_pred ceEEEEEe-------------ecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhcccc
Confidence 54433 22 234556678999999987652 678999999854332 45667888
Q ss_pred CCCCEEEEEEcCC
Q 040987 659 GSSEYLVATSWGS 671 (762)
Q Consensus 659 ~dg~~l~s~~~d~ 671 (762)
|.|++..+.+.+.
T Consensus 409 p~~~~~ttsSs~~ 421 (561)
T COG5354 409 PSGQYVTTSSSCP 421 (561)
T ss_pred CCcccceeeccCC
Confidence 8888877776665
No 229
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=1.8e-14 Score=152.75 Aligned_cols=305 Identities=20% Similarity=0.223 Sum_probs=208.2
Q ss_pred ccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCce--------eccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKK--------KFLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
.+..+..+..|...+..++.+++. .++++|+.||+|++|+...-.. ......+.++.++...+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 456778889999999999887654 9999999999999999875322 1233366789999999999999999
Q ss_pred ecCCcEEEEEcCCc--eE-----EEEEccCCCCCCCCCcccCceee-EEEeC-CCC-EEEEeecCceEEEEEcCCCCcee
Q 040987 413 CADNQVHLLKMPSM--EI-----IRSISGIKLPCPLPEEYKGLCRD-IAFNH-DGG-LVALRAENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 413 ~~d~~i~i~d~~~~--~~-----~~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~-~l~~~~~dg~i~i~d~~~~~~~~ 482 (762)
+.||.|.+.+++.. .. .+....+. .+.+.+ -+|.. ++. .++.+...+.|..||++......
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~---------~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKK---------DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccC---------CCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 99999999998752 11 11111111 123332 33333 233 68888888999999999888777
Q ss_pred eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEE
Q 040987 483 EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA 562 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~ 562 (762)
.++...+ .+.|++++.+|.+.+++.|+ ..|.+.+||++-+..+.... .++ ..+++.+.
T Consensus 1188 ~lk~~~~--------hG~vTSi~idp~~~WlviGt---------s~G~l~lWDLRF~~~i~sw~----~P~-~~~i~~v~ 1245 (1431)
T KOG1240|consen 1188 RLKNQLR--------HGLVTSIVIDPWCNWLVIGT---------SRGQLVLWDLRFRVPILSWE----HPA-RAPIRHVW 1245 (1431)
T ss_pred hhhcCcc--------ccceeEEEecCCceEEEEec---------CCceEEEEEeecCceeeccc----Ccc-cCCcceEE
Confidence 7766555 67899999999999999999 78999999999776665543 355 56788887
Q ss_pred EcCCC---CeEEEEe--CCCcEEEEEcccccccccccCC----ceeeeeecc----cCCCCeEEEEEcCCCcEEEEEc-C
Q 040987 563 FHPNR---RAAVSSS--YGGDFKVWICNDELQQKDLQSS----GWSCHAVGS----YKKKAMTAAAFSADGSVLAVAA-E 628 (762)
Q Consensus 563 ~spd~---~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~----~~~~~i~~~~~s~dg~~la~~~-d 628 (762)
.+|-. ...++++ ..+.|.+|++.++.....+... ...-..... .+........+..-+.++.+|+ |
T Consensus 1246 ~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1246 LCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred eeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc
Confidence 77643 3444444 4678999999998665544211 000000000 1111222333333445666666 9
Q ss_pred CeEEEEeCCCCeEE------------------------------------------------EEe--------ccccCce
Q 040987 629 TVITLWDPDRNVLV------------------------------------------------AVI--------GETLTPI 652 (762)
Q Consensus 629 ~~i~iwd~~~~~~~------------------------------------------------~~l--------~~~~~~v 652 (762)
..|+.||....+.. ..+ ..|..+|
T Consensus 1326 ~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~I 1405 (1431)
T KOG1240|consen 1326 MKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPI 1405 (1431)
T ss_pred cceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchh
Confidence 99999996432110 000 1366778
Q ss_pred eEEEEeCCC-CEEEEEEcCCCCeEEEEE
Q 040987 653 MNMSFVGSS-EYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 653 ~~~~~s~dg-~~l~s~~~d~~~~v~vwd 679 (762)
+++++.... .+|++++.||. |++|.
T Consensus 1406 tdma~~~~~q~llvs~s~dG~--IkiWk 1431 (1431)
T KOG1240|consen 1406 TDMATLKSEQPLLVSSSRDGV--IKIWK 1431 (1431)
T ss_pred hhhhhhccCccEEEEecCCCe--eeecC
Confidence 888887643 58889999998 99993
No 230
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.1e-15 Score=144.04 Aligned_cols=312 Identities=14% Similarity=0.163 Sum_probs=223.3
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee--ccCCCCCCeEEEEeCC--CCCeEEEEecCCcEEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK--FLPRIGSPLLYFTESP--DPSLSSISCADNQVHLL 421 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~ 421 (762)
...|..|.+.|..+.|...|..|++++.|..|.+||...+... ...+|...|....|-| +.+.+++.+.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4678889999999999999999999999999999999988764 4566777888777876 34678888899999987
Q ss_pred EcCC-ceEE--EEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 422 KMPS-MEII--RSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 422 d~~~-~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
.+.. +... ..+..|. +.|..++.-|+.. -+.+++.|+.+.-+|++.+.....+. +.......
T Consensus 215 ~i~~t~~~e~t~rl~~h~----------g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~--- 280 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHE----------GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKE--- 280 (559)
T ss_pred eeccccceecceeccccc----------CccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCcc---
Confidence 7654 2222 2333343 7889999999654 58889999999999998877655554 33322110
Q ss_pred ceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCce------eEEEE-EeecCCCCCceEEEEEcCCCCe
Q 040987 498 TVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE------FTLST-IVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 498 ~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~------~~~~~-~~~~~h~~~~v~~~~~spd~~~ 569 (762)
.-....++..|... .+++++ .|..+++||.+.-... ..+.. ...... ...|++++|+.++.-
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG---------~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~-~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGG---------SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD-PVNITGLVYSHDGSE 350 (559)
T ss_pred ceeeeeEecCCCCccccccCC---------hhhhhhhhcccchhhccccchhhhcCCccccccC-cccceeEEecCCccc
Confidence 24678889999766 778887 7889999998753322 11111 111122 567999999987766
Q ss_pred EEEEeCCCcEEEEEcccccccccccCC--ceeeeeecccCC--CCeEEEEE-cCCCcEEEEEcC-CeEEEEeCCCCeEEE
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSS--GWSCHAVGSYKK--KAMTAAAF-SADGSVLAVAAE-TVITLWDPDRNVLVA 643 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~--~~i~~~~~-s~dg~~la~~~d-~~i~iwd~~~~~~~~ 643 (762)
|.++-.|-.|++++-.-+.-....+.. ......+..+|. ..|..+-| -|...|+++|+| |.|.||+-.+++.+.
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 666666778999954332221111000 000111123343 44666654 688899999995 999999999999999
Q ss_pred EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 644 VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.+.+-..-|+|+.=+|--..||+.|-|.. |+||.-.+.
T Consensus 431 ~MegDr~VVNCLEpHP~~PvLAsSGid~D--VKIWTP~~~ 468 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHLPVLASSGIDHD--VKIWTPLTA 468 (559)
T ss_pred HhhcccceEeccCCCCCCchhhccCCccc--eeeecCCcc
Confidence 99887778999999998899999999998 999976443
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=5.2e-14 Score=146.75 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=152.5
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeC----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
..|.++|........+..+...+.+ .+|||||+.||+.+. ..|.+||+.+++... +....+.+.+.+|+|||+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~-p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIIS-PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCccc-ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-
Confidence 4677788876666677788888886 999999999999872 479999999887543 333445667899999995
Q ss_pred ccceeeeEEeeecCCeEEEEeCC--CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFS--VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKE 206 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (762)
.++++.+.++...||.+. ++. .+.
T Consensus 253 -----~la~~~~~~g~~~Iy~~d~~~~~-~~~------------------------------------------------ 278 (427)
T PRK02889 253 -----TLAVALSRDGNSQIYTVNADGSG-LRR------------------------------------------------ 278 (427)
T ss_pred -----EEEEEEccCCCceEEEEECCCCC-cEE------------------------------------------------
Confidence 444567778877776543 222 111
Q ss_pred CCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe--CCeEEEEEc--cCchhhhheeeeeeeccCc
Q 040987 207 PRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--QRKLLIWKV--PDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 207 ~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~~~i~iwd~--~~~~~~~~~~~~~~~~~~~ 282 (762)
+..+........|+|||+.|+... ++...||.+ .+++.. ... .+..
T Consensus 279 ------------------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-----~lt-~~g~ 328 (427)
T PRK02889 279 ------------------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-----RVT-FTGS 328 (427)
T ss_pred ------------------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-----EEe-cCCC
Confidence 111222344568999999988543 355556654 444321 222 2223
Q ss_pred CeEEEEEcCCCcEEEEeecCC---eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 283 KLTVLAFHPTQRIVAAGDVTG---RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
.....+|+|||++|+..+.++ .|.+||+.+++.. .+... .....+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-------------------------------~lt~~-~~~~~p 376 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-------------------------------ALTDT-TRDESP 376 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-------------------------------EccCC-CCccCc
Confidence 345678999999999876554 6999998765422 11111 223567
Q ss_pred EEecCCCEEEEEecCC---eEEEEecCCCceeccCCCCCCeEEEEeCCC
Q 040987 360 IFSSDGAYLYSGGKEG---VLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~ 405 (762)
.|+|||+.|+..+.++ .+.+.++.......+....+.+...+|+|-
T Consensus 377 ~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 377 SFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 9999999998877543 466667754333344445566777788763
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2e-13 Score=125.75 Aligned_cols=302 Identities=11% Similarity=0.097 Sum_probs=184.3
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCC-CEEEEEeCCeEEEEEccCchhhhheee-------e--ee
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSG-KYFGIRKQRKLLIWKVPDVEAERVVMR-------K--IT 277 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~~~i~iwd~~~~~~~~~~~~-------~--~~ 277 (762)
+++..|..|++||-.. ++...........|.|++|-|.+ +.|+++-.+.|.+|............. + ..
T Consensus 114 ava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~ 192 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQD 192 (445)
T ss_pred hhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeC
Confidence 7788999999999888 44434455566789999999965 567788888999998764322110000 1 11
Q ss_pred eccCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 278 LHHTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
.+| .+|++++|.+||..+++++. |..|.|||..++.... ......+.+
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p------------------------------L~~~glgg~ 241 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP------------------------------LIPKGLGGF 241 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc------------------------------ccccCCCce
Confidence 233 68999999999999998865 6789999998775332 112234568
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCC-CceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDT-GKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
.-+.|||||.+|+.+.-|+..++|+... .......-..+.|...+|+|+|++|+.+.. +.-.+|.+.
T Consensus 242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~----------- 309 (445)
T KOG2139|consen 242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT----------- 309 (445)
T ss_pred eeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEe-----------
Confidence 8899999999999999999999995443 333334444558999999999999887643 344444433
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEE-EeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
|......+. .++....+-+-|+..-....--.. ..+.+.+++|.|.|.+||
T Consensus 310 ------------------f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l----------~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 310 ------------------FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL----------CCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred ------------------ecCCCccccCcccceeeeeeccchhhhhhcCccc----------ccCccceeeECCCCCEEE
Confidence 211110000 111112222333321110000000 145688999999999999
Q ss_pred EEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC---CCCeEEEEeCCCcEEEEEcc
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP---NRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp---d~~~l~~~~~dg~i~iwd~~ 585 (762)
+.-...+... .....|.+||.+..-.......-...+. .-..++|+| ++.+|..+=..|.+.-|++.
T Consensus 362 v~fKg~~~v~-~~k~~i~~fdtr~sp~vels~cg~i~ge---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 362 VIFKGQSFVL-LCKLHISRFDTRKSPPVELSYCGMIGGE---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEcCCchhh-hhhhhhhhhcccccCceEEEecccccCC---CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 9863211000 0223566777765433332211111222 233456665 45666666566778777764
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1e-12 Score=119.31 Aligned_cols=244 Identities=16% Similarity=0.178 Sum_probs=167.7
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
...+++|..|..-+++|..+| .++|+.+.-+.... ..+....-.+..+-|-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~----------------------------r~~~~~G~~~veMLfR 57 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS----------------------------RQFIDGGFKIVEMLFR 57 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhh----------------------------hccccCchhhhhHhhh
Confidence 344599999999999987776 89999754211000 0000000122222232
Q ss_pred cCCCEEEEE-ecC------CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEcc
Q 040987 363 SDGAYLYSG-GKE------GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISG 434 (762)
Q Consensus 363 ~~g~~l~s~-~~d------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~ 434 (762)
.++|+.. |.+ ..+.+||-...+++.......+|.++.++++ .|++. ..+.|+||... +.+.++.+..
T Consensus 58 --~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 58 --SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred --hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeec
Confidence 2344433 222 4699999777777777888899999999876 45544 67899999988 4666666655
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
...| ..+.+++-..+..+||.-+ .-|.|++.|+...+.-..... ..|...|.+++++-+|..+
T Consensus 133 ~~NP--------kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I--------~AH~s~Iacv~Ln~~Gt~v 196 (346)
T KOG2111|consen 133 RSNP--------KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII--------NAHDSDIACVALNLQGTLV 196 (346)
T ss_pred ccCC--------CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE--------EcccCceeEEEEcCCccEE
Confidence 4422 2344444344455666655 459999999987654211111 1237889999999999999
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
|+++. ...-|||||..++..+.++.. |-....|.+++|||++.+||++|+.|++.|+.+....
T Consensus 197 ATaSt--------kGTLIRIFdt~~g~~l~E~RR----G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 197 ATAST--------KGTLIRIFDTEDGTLLQELRR----GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEecc--------CcEEEEEEEcCCCcEeeeeec----CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99994 455789999999999988864 4336689999999999999999999999999987644
No 234
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.64 E-value=6e-12 Score=120.23 Aligned_cols=227 Identities=15% Similarity=0.061 Sum_probs=155.7
Q ss_pred eCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCC-CCCCCcccCceeeEE-EeC-CCCEEEEeecCceEEEEEcCCC
Q 040987 402 ESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLP-CPLPEEYKGLCRDIA-FNH-DGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 402 ~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~-~s~-~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
.+.||+.++.. ..|.|++||..+..+...--+.... .......-....-+. |++ +|.+++..+. |...+.+...+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 46789998875 7889999999875543322121100 000000000111111 333 5778887765 55777766554
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee-EEEEEEecCCCceeEEEEEeecCCCCCc
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV-CLKFWVSGTQNKEFTLSTIVYEPHRDAG 557 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~h~~~~ 557 (762)
-.+ +... ...|.-..+..+++-++.+. .|+ .+-+||.++++..... +. -+.
T Consensus 352 ~~i---qv~~---------~~~VrY~r~~~~~e~~vigt---------~dgD~l~iyd~~~~e~kr~e------~~-lg~ 403 (668)
T COG4946 352 YSI---QVGK---------KGGVRYRRIQVDPEGDVIGT---------NDGDKLGIYDKDGGEVKRIE------KD-LGN 403 (668)
T ss_pred eeE---EcCC---------CCceEEEEEccCCcceEEec---------cCCceEEEEecCCceEEEee------CC-ccc
Confidence 322 2111 44577777888888888887 555 8999999998754432 33 678
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C----CeEE
Q 040987 558 ISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E----TVIT 632 (762)
Q Consensus 558 v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d----~~i~ 632 (762)
|.++..+|||++++.+.....+.+.|+.++.....- ....+-|+.+.|||+++++|.+- + ..|+
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-----------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik 472 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-----------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK 472 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-----------ccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence 999999999999999998889999999998765443 23467899999999999999986 4 5799
Q ss_pred EEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcC
Q 040987 633 LWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 633 iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
++|+.+++....-. ....-.+.+|.|||++|..-+..
T Consensus 473 lydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 473 LYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred EEecCCCeEEEecC-CcccccCcccCCCCcEEEEEecc
Confidence 99999887765443 44445778999999999987654
No 235
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.9e-12 Score=126.02 Aligned_cols=332 Identities=15% Similarity=0.189 Sum_probs=216.5
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
-+-+.|||.|.||++--..| |.+|--.+-. .++.+. | ..|.-+.|||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~------------------------------r~~RF~-H-p~Vq~idfSP 259 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFD------------------------------RIQRFY-H-PGVQFIDFSP 259 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHH------------------------------HHHhcc-C-CCceeeecCC
Confidence 45789999999999987666 8899643221 122222 3 3588899999
Q ss_pred CCCEEEEEec-----------CCeEEEEecCCCceeccCC---CCCCe-EEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 364 DGAYLYSGGK-----------EGVLVVWQLDTGKKKFLPR---IGSPL-LYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 364 ~g~~l~s~~~-----------dg~i~~wd~~~~~~~~~~~---~~~~v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
+.++|++-+. ...+++||+.+|....... .+..+ .-+.||.|++++|.-.. +.|.||+..+..+
T Consensus 260 ~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l 338 (698)
T KOG2314|consen 260 NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML 338 (698)
T ss_pred ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence 9999998652 2579999999998854222 22222 23679999999997654 6899999887443
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
+ ......+ ..|....|+|.+..||.-+.. ..+.+..+.+.+.+...... ...-..
T Consensus 339 l---d~Kslki-------~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf----------nVsDck 398 (698)
T KOG2314|consen 339 L---DKKSLKI-------SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF----------NVSDCK 398 (698)
T ss_pred e---cccccCC-------ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce----------eeeccE
Confidence 3 2222222 678899999999888875532 35667777776655543322 222345
Q ss_pred EEEecCCCeEEEEeeeccccC-CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcE
Q 040987 504 VALSQDGSLMSTVDIKLAEEG-IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDF 579 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i 579 (762)
+-|-.+|.+|+.--.+..... .+.-..+.|+.++....+..... - ...|...+|-|.|..+++-+.+ .++
T Consensus 399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-----l-ke~vi~FaWEP~gdkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-----L-KESVIAFAWEPHGDKFAVISGNTVKNTV 472 (698)
T ss_pred EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-----c-chheeeeeeccCCCeEEEEEccccccce
Confidence 667788988887654322221 22344677777776655433321 2 6688999999999988776533 578
Q ss_pred EEEEcccc-cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc----CCeEEEEeCCCC--eEEEEeccccCce
Q 040987 580 KVWICNDE-LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA----ETVITLWDPDRN--VLVAVIGETLTPI 652 (762)
Q Consensus 580 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~----d~~i~iwd~~~~--~~~~~l~~~~~~v 652 (762)
.+|.+.+. ...... . .......+.+.|+|.|++++.+. .|.+.++|+.-. +...... | ...
T Consensus 473 sfY~~e~~~~~~~lV--------k--~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e-h-~~a 540 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLV--------K--ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE-H-FAA 540 (698)
T ss_pred eEEEeecCCCchhhh--------h--hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc-c-ccc
Confidence 88988742 111111 0 11245667899999999998874 689999999853 3332322 3 346
Q ss_pred eEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 653 MNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 653 ~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+.+.|.|.|+|+++++.-.. -.+++|=.++.+++.
T Consensus 541 t~veWDPtGRYvvT~ss~wr-----hk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSSSWR-----HKVDNGYRIFTFQGR 575 (698)
T ss_pred ccceECCCCCEEEEeeehhh-----hccccceEEEEeecH
Confidence 78999999999999975432 123444445444444
No 236
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=4e-14 Score=145.82 Aligned_cols=282 Identities=12% Similarity=0.102 Sum_probs=195.1
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-EEE-eCCeEEEEEccCchhh-hheeeeeeeccCcCeEEEE
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-GIR-KQRKLLIWKVPDVEAE-RVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~-~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~ 288 (762)
.++.+.+|+++..... .....-...|.++.|+|....+ |+| .+|.|.+||+..+... ..........|..++..+.
T Consensus 220 ~~~~~~vW~~~~p~~P-e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 220 PDGVLLVWSLKNPNTP-ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CCceEEEEecCCCCCc-eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 3458999999988444 6667778899999999966554 544 7999999999987753 2233344557999999999
Q ss_pred EcCCCc--EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec-CC
Q 040987 289 FHPTQR--IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS-DG 365 (762)
Q Consensus 289 ~sp~~~--~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g 365 (762)
|..+-. -+++++.||.|..|+++.-..-... .... .......-......++++.|.+ +-
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~--~~~~----------------~~~~~~~~~~~~~~~t~~~F~~~~p 360 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG--LLLE----------------SKKHKGQQSSKAVGATSLKFEPTDP 360 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhh--cccc----------------cccccccccccccceeeEeeccCCC
Confidence 987544 4899999999999986543211000 0000 0000000012234578899977 44
Q ss_pred CEEEEEecCCeEEEEecC---CCc------eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEccC
Q 040987 366 AYLYSGGKEGVLVVWQLD---TGK------KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISGI 435 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~---~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~ 435 (762)
..++.|+.+|.|..-+.. ... ......|.++|.++.++|=+..++..+.|-+++||... ...++..+..+
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~ 440 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS 440 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc
Confidence 678899999998774333 222 11345577899999999988776666679999999987 55555555554
Q ss_pred CCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
. ..+.+++|||.. ..++++..+|.+.+||+.............. ....+.+.|+++|+.|+
T Consensus 441 ~----------~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--------~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 441 P----------DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--------SPALTRVRWSPNGKLLA 502 (555)
T ss_pred c----------ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc--------ccccceeecCCCCcEEE
Confidence 4 568999999965 4567777799999999976543222211111 34567888899999999
Q ss_pred EEeeeccccCCCceeEEEEEEecCC
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
+|+ ..|.+.+|++...
T Consensus 503 vGd---------~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 503 VGD---------ANGTTHILKLSES 518 (555)
T ss_pred Eec---------CCCcEEEEEcCch
Confidence 999 8899999999643
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=4.5e-14 Score=136.64 Aligned_cols=254 Identities=15% Similarity=0.130 Sum_probs=161.8
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEE-----cCCCcEEEEeecCCeEEEEecc
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAF-----HPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.+....++-.|.+|+......+++|+...+.....++.+...... ...|-+| .|++--|+.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt-~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGT-SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCC-CCceecccccccCCCCcceEEeeccCceEEecch
Confidence 445566677788998888889999999865443223322222222 2223333 4566678888888999998864
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEEEEecCCeEEEEecCCCceecc
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLYSGGKEGVLVVWQLDTGKKKFL 390 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~~ 390 (762)
..+..... + ....-....|+++.|-|.+. .++.+-.+|.++++|..-..
T Consensus 204 ~~~~sklf----n----------------------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~---- 253 (636)
T KOG2394|consen 204 NFEVSKLF----N----------------------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC---- 253 (636)
T ss_pred hhHHHHhh----h----------------------hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc----
Confidence 42110000 0 00011236799999988553 45555678999999872110
Q ss_pred CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceE
Q 040987 391 PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 391 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
.... .+....+++..+......+. .+..++..+.-- ++.|..++|+|||++||+.++||.+
T Consensus 254 -~~t~--p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~----------~g~in~f~FS~DG~~LA~VSqDGfL 314 (636)
T KOG2394|consen 254 -GATA--PSYQALKDGDQFAILTSKSK------KTRNPVARWHIG----------EGSINEFAFSPDGKYLATVSQDGFL 314 (636)
T ss_pred -cCCC--CcccccCCCCeeEEeeeecc------ccCCccceeEec----------cccccceeEcCCCceEEEEecCceE
Confidence 0000 11112234444443321110 001122222111 2678899999999999999999999
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
+|||..+.+.+..+... -+...|++|||||+||++|+ +|.-|.||.+...+.+..-
T Consensus 315 RvF~fdt~eLlg~mkSY----------FGGLLCvcWSPDGKyIvtGG---------EDDLVtVwSf~erRVVARG----- 370 (636)
T KOG2394|consen 315 RIFDFDTQELLGVMKSY----------FGGLLCVCWSPDGKYIVTGG---------EDDLVTVWSFEERRVVARG----- 370 (636)
T ss_pred EEeeccHHHHHHHHHhh----------ccceEEEEEcCCccEEEecC---------CcceEEEEEeccceEEEec-----
Confidence 99999887655443322 45689999999999999999 8899999999988765543
Q ss_pred cCCCCCceEEEEEcC
Q 040987 551 EPHRDAGISAVAFHP 565 (762)
Q Consensus 551 ~~h~~~~v~~~~~sp 565 (762)
++| ...|..|+|.|
T Consensus 371 qGH-kSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGH-KSWVSVVAFDP 384 (636)
T ss_pred ccc-ccceeeEeecc
Confidence 689 99999999987
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=2.2e-13 Score=123.58 Aligned_cols=240 Identities=14% Similarity=0.193 Sum_probs=163.7
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cC------c
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-EN------Y 468 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d------g 468 (762)
...+++|+.|...++++ .+...+||+.+..+......-+. +.+.-+..--..++++..+ .+ +
T Consensus 7 ~~lsvs~NQD~ScFava-~~~Gfriyn~~P~ke~~~r~~~~----------~G~~~veMLfR~N~laLVGGg~~pky~pN 75 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVA-TDTGFRIYNCDPFKESASRQFID----------GGFKIVEMLFRSNYLALVGGGSRPKYPPN 75 (346)
T ss_pred ceeEEEEccCCceEEEE-ecCceEEEecCchhhhhhhcccc----------CchhhhhHhhhhceEEEecCCCCCCCCCc
Confidence 45569999999999888 45568999987633222111111 1111111112234444433 22 5
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLST 547 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~ 547 (762)
.+.|||-...+++.++.. ..+|.++.++++- |++. ..+.|++|... ..+....+.+
T Consensus 76 kviIWDD~k~~~i~el~f-----------~~~I~~V~l~r~r--iVvv----------l~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELSF-----------NSEIKAVKLRRDR--IVVV----------LENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred eEEEEecccCcEEEEEEe-----------ccceeeEEEcCCe--EEEE----------ecCeEEEEEcCCChhheeeeec
Confidence 799999777777766655 5679999998764 4444 34699999988 4455555544
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
... +....+++-+.+..+||.-+ .-|.|+|-|+...+.... ....+|...|.+++.+-+|.++|++
T Consensus 133 ---~~N-PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p---------~~I~AH~s~Iacv~Ln~~Gt~vATa 199 (346)
T KOG2111|consen 133 ---RSN-PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAP---------SIINAHDSDIACVALNLQGTLVATA 199 (346)
T ss_pred ---ccC-CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCc---------eEEEcccCceeEEEEcCCccEEEEe
Confidence 222 33444444333445566533 458999999976655211 2235799999999999999999999
Q ss_pred c-CCe-EEEEeCCCCeEEEEecccc--CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 627 A-ETV-ITLWDPDRNVLVAVIGETL--TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 627 ~-d~~-i~iwd~~~~~~~~~l~~~~--~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+ .|+ |+|||..+|+++..++... ..|.+++||||+.+|+.+|+.|+ |+|+.+....
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT--lHiF~l~~~~ 259 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT--LHIFSLRDTE 259 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe--EEEEEeecCC
Confidence 8 665 8999999999999986433 34999999999999999999998 9999987644
No 239
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.63 E-value=4.6e-12 Score=123.77 Aligned_cols=281 Identities=12% Similarity=0.023 Sum_probs=177.0
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec----------CCcEEEEEcCCceEEEEEccCCCCCCCCCc
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA----------DNQVHLLKMPSMEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (762)
++|.+.|.++++.+.....+..-..+ +|||++.++++.. +..|.+||..+++.+..+.-...+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh---
Confidence 78999999998876544433333344 9999999888765 678999999999999888643321000
Q ss_pred ccCceeeEEEeCCCCEEEEee-c-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 445 YKGLCRDIAFNHDGGLVALRA-E-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
.......++++|||++|++.. . +..|.+.|+.+++.+.++.... ...-+..+++..++.+
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-----------~~~vy~t~e~~~~~~~------- 164 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-----------CYHIFPTANDTFFMHC------- 164 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----------CcEEEEecCCccEEEe-------
Confidence 002334789999999998765 3 6899999999999888776522 1122222222222222
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCce-EEEEEcC-CCCeEEEEeCCCcEEEEEcccccccccccCCceee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGI-SAVAFHP-NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSC 600 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v-~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 600 (762)
.|+......+.+...........+.+. ...+ ..-.|++ +|+++..... |+|.+.|+......... .|..
T Consensus 165 ----~Dg~~~~v~~d~~g~~~~~~~~vf~~~-~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~---~~~~ 235 (352)
T TIGR02658 165 ----RDGSLAKVGYGTKGNPKIKPTEVFHPE-DEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP---AIEA 235 (352)
T ss_pred ----ecCceEEEEecCCCceEEeeeeeecCC-ccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc---eeee
Confidence 222333322222221111111111110 0000 0014455 7877776665 99999997554433222 2221
Q ss_pred eeec----ccCCCCeEEEEEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCC-EE
Q 040987 601 HAVG----SYKKKAMTAAAFSADGSVLAVAA-----------ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSE-YL 664 (762)
Q Consensus 601 ~~~~----~~~~~~i~~~~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~-~l 664 (762)
.... .-..+.+.-++++|||+.+.+.. .+.|.++|..+++.+..+.. ...+..++++||++ +|
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLL 314 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEE
Confidence 1111 11234445599999999888742 26899999999999998863 35789999999999 77
Q ss_pred EEEE-cCCCCeEEEEECCCCceeeEE
Q 040987 665 VATS-WGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 665 ~s~~-~d~~~~v~vwd~~~~~~~~~~ 689 (762)
++.. .++. |.+.|+.+++.+.++
T Consensus 315 yvtn~~s~~--VsViD~~t~k~i~~i 338 (352)
T TIGR02658 315 YALSTGDKT--LYIFDAETGKELSSV 338 (352)
T ss_pred EEeCCCCCc--EEEEECcCCeEEeee
Confidence 7766 4555 999999999998876
No 240
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=7.8e-14 Score=148.00 Aligned_cols=364 Identities=11% Similarity=0.062 Sum_probs=211.1
Q ss_pred EecCCcceeeeecCcccccCCceeecCC-CEEEEEe-CCEEEEEEcccc-------eEEeeecCCccceeEEEEeCCCCc
Q 040987 58 AEYPAVNSKMIRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTG-------LQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 58 ~~~~~~~~~~~~~h~~~v~~~~~~s~dg-~~la~~~-~~~i~iwd~~~~-------~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
|+..+.-...+..|...|.. ++.+++. .++++|+ ||+|+|||...- +...++..-...+.++.+.+.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k-~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-- 1110 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIK-LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-- 1110 (1431)
T ss_pred CCccceEeehhhhccccccc-eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--
Confidence 77777777788999999997 7777655 9999999 699999998531 2333444457789999999999
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCc--c-----eEEEEEec--cceEEEeecccccCCcccCCCCCceEEEEEeeecccc
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVP--E-----LLKTIDVK--FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRET 199 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~--~-----~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (762)
..+|.++.||.|++.++..- + +.+....+ ..+.+| .+|........+
T Consensus 1111 -----~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m-------------------~a~~~~~~S~~l 1166 (1431)
T KOG1240|consen 1111 -----DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM-------------------HAFTAIVQSHVL 1166 (1431)
T ss_pred -----CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-------------------ecccccccceeE
Confidence 57888899999999998762 2 11111112 234444 222221111001
Q ss_pred CcCCccCCCCCCccccEEEEecCCccccce-eeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeee
Q 040987 200 TKSHKKEPRPNTMNGRICKCNLTESRLAGG-VTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKIT 277 (762)
Q Consensus 200 ~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~ 277 (762)
+.+...+.|..||+........ ......+.|++++.+|.+.+++.| +.|.+.+||++-+.. +....
T Consensus 1167 --------vy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~----i~sw~ 1234 (1431)
T KOG1240|consen 1167 --------VYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP----ILSWE 1234 (1431)
T ss_pred --------EEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce----eeccc
Confidence 3355778899999987766522 223356789999999999999866 689999999997763 33444
Q ss_pred eccCcCeEEEEEcCC---CcEEEEe-e-cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 278 LHHTKKLTVLAFHPT---QRIVAAG-D-VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~---~~~l~~~-~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
..+..++..+..+|- ....+++ + ..+.|.+|++.++...... ......+.+....... ..-+.+
T Consensus 1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl---------~~s~~~p~ls~~~Ps~--~~~kp~ 1303 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL---------WASDGAPILSYALPSN--DARKPD 1303 (1431)
T ss_pred CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE---------EcCCCCcchhhhcccc--cCCCCC
Confidence 456678888877763 2344444 3 5788999999887432211 0000000000000000 000012
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCCCCCeEEEEecCCcEEE-EEcCC----
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESPDPSLSSISCADNQVHL-LKMPS---- 425 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i-~d~~~---- 425 (762)
.-......+...+..+++|+.|..|+.||....+... ..+..........+.+ ..++.++.--...+ +....
T Consensus 1304 ~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~ 1382 (1431)
T KOG1240|consen 1304 SLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTE 1382 (1431)
T ss_pred cccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchh
Confidence 2222233444455688999999999999988766541 1111111111111111 11111111000000 11110
Q ss_pred -ceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEE
Q 040987 426 -MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYS 474 (762)
Q Consensus 426 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d 474 (762)
+....... ..+......|...|.++++.... .+|++++.||.|++|.
T Consensus 1383 ~~~~~~~~~--~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1383 ALRENQKLR--PGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hcccccccc--cCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 11111111 11122233456788888876643 5788899999999993
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1e-12 Score=131.54 Aligned_cols=459 Identities=12% Similarity=0.149 Sum_probs=286.2
Q ss_pred cccCCceeecCCCEEEEEe-CCEEEEEEcccce---------------EEeeecCCccceeEEEEeCCCCcccceeeeEE
Q 040987 74 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL---------------QISSLEGHKAPVTTVIVVPASTPATKILSYCW 137 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~---------------~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~ 137 (762)
...| ++|+....|+|.|+ ||.++|..+.+.. .-++|.||.+.|.-+.|..+.+ -|-
T Consensus 16 kL~c-~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-------KLT 87 (1189)
T KOG2041|consen 16 KLHC-AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-------KLT 87 (1189)
T ss_pred eEEE-EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-------ccc
Confidence 3455 99999999999999 7999999876432 1257889999999999999984 344
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
|+..+|.|.||-+-.|.......
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMi--------------------------------------------------------- 110 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMI--------------------------------------------------------- 110 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHh---------------------------------------------------------
Confidence 88899999999987765332211
Q ss_pred EEecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEE
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIV 296 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 296 (762)
.....+.|.+++|..||..++ +-.||.|.+=.++........++- .....+.|++|.+.+
T Consensus 111 -------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg------~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 111 -------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG------QLLAHVLWSEDLEQA 171 (1189)
T ss_pred -------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch------heccceeecccHHHH
Confidence 111234567888888998887 557888877777665432111111 123468899999998
Q ss_pred EEeecCCeEEEEeccCCceeeccc-ccccccccccccCCCCcccCCccccceeeeccccceeEEEE--------ecCCCE
Q 040987 297 AAGDVTGRILIWRGFGDRTFATND-NKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF--------SSDGAY 367 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------s~~g~~ 367 (762)
+.+-.+|.+.++|..++-..+... ...++. ..+......|..+.| -||...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t--------------------g~~s~~~~kia~i~w~~g~~~~v~pdrP~ 231 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGT--------------------GIFSNFPTKIAEIEWNTGPYQPVPPDRPR 231 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeee--------------------eeecCCCccccceeeccCccccCCCCCCE
Confidence 888889999999976652221110 000100 011111122444444 257788
Q ss_pred EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---------CcEEEEEcCCceEEEEEccCCCC
Q 040987 368 LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---------NQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
|+.+-..|.+.+..-.+.....+...+..+..+.|+++|..|++++.+ +.|++|..- |..+.+++...
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg-- 308 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPG-- 308 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCC--
Confidence 999988898888765554444444555778899999999999998754 245555443 67777777655
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..|++++|-..|-.++.+ -|+.|++-+++..-. ..... ..+.+--.+.-+
T Consensus 309 --------~~It~lsWEg~gLriA~A-vdsfiyfanIRP~yk---Wgy~e-------------~TvVy~y~~~e~----- 358 (1189)
T KOG2041|consen 309 --------SCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYK---WGYIE-------------ETVVYVYQKEEL----- 358 (1189)
T ss_pred --------ceeeeeEEcCCceEEEEE-ecceEEEEeecccce---EEEee-------------eEEEEEEccCCC-----
Confidence 678999999888777775 577888887764321 11110 011111111000
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc-ccccccccCCc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND-ELQQKDLQSSG 597 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 597 (762)
-...|.+||..+.+..... -....+++++.+--.|+.-..|+.+.-++.-. ......+
T Consensus 359 --------p~y~i~Fwdtk~nek~vK~---------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l---- 417 (1189)
T KOG2041|consen 359 --------PQYGIMFWDTKTNEKTVKT---------VTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFL---- 417 (1189)
T ss_pred --------cceEEEEEecccChhhhhh---------hcceeehheecccEEEEeccccCCCcchhhhhcccceEEE----
Confidence 2346899999988764332 12345677776665666666677666553211 1111100
Q ss_pred eeeeeecccCCCCeEE---EEEcCCCcEEEEEcCCeEEEEeCCCCeE--------------------------------E
Q 040987 598 WSCHAVGSYKKKAMTA---AAFSADGSVLAVAAETVITLWDPDRNVL--------------------------------V 642 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~---~~~s~dg~~la~~~d~~i~iwd~~~~~~--------------------------------~ 642 (762)
.-|...+..-...++. .-..-++.+++.++...+.+|.....+. .
T Consensus 418 ~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~ 497 (1189)
T KOG2041|consen 418 QLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYST 497 (1189)
T ss_pred eeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccc
Confidence 0011112111222222 1122366777778877788887432110 1
Q ss_pred EEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 643 AVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 643 ~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.++.|..++|..++.+. ++|..+-..|. |.-|.+.+..+..++.....
T Consensus 498 kt~~G~~DpICAl~~sd--k~l~vareSG~--I~rySl~nv~l~n~y~~n~~ 545 (1189)
T KOG2041|consen 498 KTLLGSKDPICALCISD--KFLMVARESGG--IYRYSLNNVVLTNSYPVNPS 545 (1189)
T ss_pred eeeccCCCcceeeeecc--eEEEEEeccCc--eEEEEecceeeeeccccCch
Confidence 23445667788888765 78888888887 99999999988887766554
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-13 Score=134.75 Aligned_cols=286 Identities=14% Similarity=0.181 Sum_probs=207.1
Q ss_pred cccceeEEEEecCCCEEE-EEecCCeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAYLY-SGGKEGVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
|...-+.+..+|||++++ +|.....|++||+..-...........+.. .-++.|-..++.-..|..|.+-... |...
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ceee
Confidence 566778899999999865 455668999999998777666655554444 4456666666666667766654322 2211
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.. .-. ..-.+++++.-.--|.+++....|+-+++..|.-+..+... ...+.++..++.
T Consensus 129 ~~-RIP-----------~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~----------~~~lN~v~in~~ 186 (703)
T KOG2321|consen 129 RT-RIP-----------KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD----------SGELNVVSINEE 186 (703)
T ss_pred ee-ecC-----------cCCccccccCCCccEEEeecCcceEEEEccccccccccccc----------cccceeeeecCc
Confidence 11 111 12345666543333555555567999999998877666543 567999999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe-ecCCC----CCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV-YEPHR----DAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~h~----~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
..+|++|+ .+|.|.+||.++......+.... ...|+ ...|+++.|+.||-.+++|+.+|.+.|||+
T Consensus 187 hgLla~Gt---------~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 187 HGLLACGT---------EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred cceEEecc---------cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 99999998 89999999999887766665321 12230 234999999999999999999999999999
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCC--CcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCC
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSAD--GSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~ 662 (762)
+..+....- .+....+|..+.|-+. +..+++.....++|||-.+|+....+. ....++.+++-|++-
T Consensus 258 Ra~~pl~~k----------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 258 RASKPLLVK----------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSG 326 (703)
T ss_pred ccCCceeec----------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCc
Confidence 988766544 2344678889999775 456666667889999999999999887 455699999999999
Q ss_pred EEEEEEcCCCCeEEEEECCC
Q 040987 663 YLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 663 ~l~s~~~d~~~~v~vwd~~~ 682 (762)
++++|-.++. +..|=+..
T Consensus 327 m~f~Ane~~~--m~~yyiP~ 344 (703)
T KOG2321|consen 327 MFFTANESSK--MHTYYIPS 344 (703)
T ss_pred eEEEecCCCc--ceeEEccc
Confidence 9999988877 66555443
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.9e-13 Score=133.37 Aligned_cols=308 Identities=11% Similarity=0.122 Sum_probs=214.9
Q ss_pred cccEEEEecCCccccceee-----------------------eccCCCceEEEECCCCCEEE-EE-eCCeEEEEEccCch
Q 040987 213 NGRICKCNLTESRLAGGVT-----------------------LAEMKEPQVITISSSGKYFG-IR-KQRKLLIWKVPDVE 267 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~-----------------------~~~~~~v~~~~~spdg~~la-~~-~~~~i~iwd~~~~~ 267 (762)
-+.|+||++..++.+...+ ..++..-+.|..+|||+|+. +| ..-.|++||+....
T Consensus 6 ~NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS 85 (703)
T KOG2321|consen 6 VNDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS 85 (703)
T ss_pred cCceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccce
Confidence 3578888887776662222 23667788999999999996 44 57899999999876
Q ss_pred hhhheeeeeeeccCc-CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccc
Q 040987 268 AERVVMRKITLHHTK-KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLC 346 (762)
Q Consensus 268 ~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (762)
. ++...-.+ .|.-.-++.|-..++.-..|.+|.+....+. .+.
T Consensus 86 L------KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-hy~----------------------------- 129 (703)
T KOG2321|consen 86 L------KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-HYR----------------------------- 129 (703)
T ss_pred e------eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe-eee-----------------------------
Confidence 5 33333333 3444445666666666667887776653221 000
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..+ ...-..++++.-..-|+.++....|+-++++.|+...- ....+.+.++..++-..+|++|+.+|.|..||.+.
T Consensus 130 ~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 130 TRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 000 01123445544334466666667899999999998653 33447899999999999999999999999999998
Q ss_pred ceEEEEEccCCCCCCCCC--cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 426 MEIIRSISGIKLPCPLPE--EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
......+..... +.... .....|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-... . ..+|..
T Consensus 207 ksrv~~l~~~~~-v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~---~------e~pi~~ 276 (703)
T KOG2321|consen 207 KSRVGTLDAASS-VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG---Y------ELPIKK 276 (703)
T ss_pred hhhheeeecccc-cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC---C------ccceee
Confidence 766666543322 00000 01135899999999999999999999999999988765443221 1 567889
Q ss_pred EEEecC--CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 504 VALSQD--GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 504 ~~~sp~--g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
+.|.+. +..+++. ....++|||-.+++....+.. ...++.+++-|++.+++++-.++.+..
T Consensus 277 l~~~~~~~q~~v~S~----------Dk~~~kiWd~~~Gk~~asiEp-------t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM----------DKRILKIWDECTGKPMASIEP-------TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ecccccCCCceEEec----------chHHhhhcccccCCceeeccc-------cCCcCceeeecCCceEEEecCCCccee
Confidence 999775 4566666 557999999999988766542 456999999999999999998887776
Q ss_pred EEccc
Q 040987 582 WICND 586 (762)
Q Consensus 582 wd~~~ 586 (762)
|=+..
T Consensus 340 yyiP~ 344 (703)
T KOG2321|consen 340 YYIPS 344 (703)
T ss_pred EEccc
Confidence 65543
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=1.5e-13 Score=125.06 Aligned_cols=166 Identities=11% Similarity=0.206 Sum_probs=116.2
Q ss_pred EEEEEEecCCCeEEEEeee-ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE--eCCC
Q 040987 501 VTLVALSQDGSLMSTVDIK-LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS--SYGG 577 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~--~~dg 577 (762)
-..+.|+|+|.+|++-... ....+...-+...+|.++.......... ... .+.|.+++|+|+|+.+|+. ..++
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~---l~~-~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE---LKK-EGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee---ccC-CCceEEEEECcCCCEEEEEEccCCc
Confidence 4568899999988876642 1111212334566666644332222111 122 4579999999999987654 3567
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc----CCeEEEEeCCCCeEEEEeccccCcee
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA----ETVITLWDPDRNVLVAVIGETLTPIM 653 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~----d~~i~iwd~~~~~~~~~l~~~~~~v~ 653 (762)
.+.+||++ ++....+ +...+..+.|||+|++|++++ .|.|.+||+++.+.+.... |. .+.
T Consensus 84 ~v~lyd~~-~~~i~~~-------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t 147 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSF-------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DAT 147 (194)
T ss_pred ccEEEcCc-ccEeEee-------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEE
Confidence 99999996 3333333 356778999999999999885 4789999999999988875 33 478
Q ss_pred EEEEeCCCCEEEEEEc------CCCCeEEEEECCCCceeeEE
Q 040987 654 NMSFVGSSEYLVATSW------GSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~~------d~~~~v~vwd~~~~~~~~~~ 689 (762)
.++|||||++|++++. |+. ++||+.. |+++...
T Consensus 148 ~~~WsPdGr~~~ta~t~~r~~~dng--~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 148 DVEWSPDGRYLATATTSPRLRVDNG--FKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEcCCCCEEEEEEeccceecccc--EEEEEec-CeEeEec
Confidence 9999999999999875 454 8999974 6555443
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=8.8e-12 Score=131.03 Aligned_cols=187 Identities=12% Similarity=0.132 Sum_probs=146.9
Q ss_pred ceeEEEEecCCCeEEEEecCCcceeeeecCcccccC----CceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccc
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSS----PPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAP 116 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~----~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~ 116 (762)
+...++.+..+..+.+|+...........+...... -+.++++.=++++|. -+.|++|+..-.+.-..+.||.+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 355777788889999999988777666666544321 134577778899998 599999998743333468999999
Q ss_pred eeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeec
Q 040987 117 VTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDT 196 (762)
Q Consensus 117 V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (762)
|..+.|+.|| .+++|.|.|+++|+|++++++...
T Consensus 178 iF~i~~s~dg-------~~i~s~SdDRsiRlW~i~s~~~~~--------------------------------------- 211 (967)
T KOG0974|consen 178 IFSIVTSLDG-------RYIASVSDDRSIRLWPIDSREVLG--------------------------------------- 211 (967)
T ss_pred eEEEEEccCC-------cEEEEEecCcceeeeecccccccC---------------------------------------
Confidence 9999999999 799999999999999999876432
Q ss_pred cccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee
Q 040987 197 RETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI 276 (762)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~ 276 (762)
....+|+..|..++|.|+ +.+.++.|.+.++|+....+.. .
T Consensus 212 --------------------------------~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~------~ 252 (967)
T KOG0974|consen 212 --------------------------------CTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLE------V 252 (967)
T ss_pred --------------------------------cccccccceeEEEEeccc-eeEEeccceEEEEEecccceeh------h
Confidence 134568888999999999 4445779999999977665542 3
Q ss_pred eecc-CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 277 TLHH-TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 277 ~~~~-~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
..+| ...|..++..++...+++++.|+.+++|++...
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 3444 457999999999999999999999999997544
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5.4e-12 Score=126.48 Aligned_cols=513 Identities=12% Similarity=0.085 Sum_probs=301.7
Q ss_pred EEEeecCCcceeEEEEecCCCeEEEEecCC----cce------------eeeecCcccccCCceeecCCCEEEEEe-CCE
Q 040987 33 ILIERKPRSRSFIFAVARSSGLCRTAEYPA----VNS------------KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNT 95 (762)
Q Consensus 33 ~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~----~~~------------~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~ 95 (762)
.+.+.+....+.++|.|+.||.+++..+.+ .+. .++.||...|.. +.|+.+.+.|-+.. +|.
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~v-vTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMV-VTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEE-EEeccccccccccCCCce
Confidence 344445555688999999999999988763 111 257999999997 99999999998888 699
Q ss_pred EEEEEcccceEEeee--cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeeccc
Q 040987 96 VSIFSTSTGLQISSL--EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSL 173 (762)
Q Consensus 96 i~iwd~~~~~~~~~l--~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~ 173 (762)
|.||=+-.|.=...+ .-....|.+++|..||+ -++....||.|.|=.++..+
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-------kIcIvYeDGavIVGsvdGNR------------------- 148 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-------KICIVYEDGAVIVGSVDGNR------------------- 148 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-------EEEEEEccCCEEEEeeccce-------------------
Confidence 999998776533222 23457799999999994 55678889888775543221
Q ss_pred ccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE
Q 040987 174 LRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR 253 (762)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~ 253 (762)
||.-+ +. ......+.|++|.+.+..+
T Consensus 149 --------------------------------------------IwgKe----Lk------g~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 149 --------------------------------------------IWGKE----LK------GQLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred --------------------------------------------ecchh----cc------hheccceeecccHHHHHhh
Confidence 12110 00 0112356788887766543
Q ss_pred -eCCeEEEEEccCchhhhhee------eeeeeccCcCeEEEEEc--------CCCcEEEEeecCCeEEEEeccCCceeec
Q 040987 254 -KQRKLLIWKVPDVEAERVVM------RKITLHHTKKLTVLAFH--------PTQRIVAAGDVTGRILIWRGFGDRTFAT 318 (762)
Q Consensus 254 -~~~~i~iwd~~~~~~~~~~~------~~~~~~~~~~v~~~~~s--------p~~~~l~~~~~dg~v~vw~~~~~~~~~~ 318 (762)
.+|.+.++|....-...... ..........|-.+.|. ||...||++..+|.+.+..-+...
T Consensus 175 ~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~---- 250 (1189)
T KOG2041|consen 175 KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP---- 250 (1189)
T ss_pred hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC----
Confidence 67788888766432210000 01111112234455553 577899999999999887654331
Q ss_pred ccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC---------eEEEEecCCCceec
Q 040987 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG---------VLVVWQLDTGKKKF 389 (762)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---------~i~~wd~~~~~~~~ 389 (762)
.++..-.+ -.+..+.|+++|..|+.++.+. .|.++..-..-.-.
T Consensus 251 -------------------------~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gt 303 (1189)
T KOG2041|consen 251 -------------------------EPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGT 303 (1189)
T ss_pred -------------------------CCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEE
Confidence 22222222 4578899999999999988652 34555433222234
Q ss_pred cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc--------eEEEEEccCCCCCCC--------CC---cccCcee
Q 040987 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM--------EIIRSISGIKLPCPL--------PE---EYKGLCR 450 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~~--------~~---~~~~~v~ 450 (762)
+...+..|+.++|-..|-.++.+ .|+.|++=+++.. ..+...+....+... .. ..-....
T Consensus 304 lkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~ 382 (1189)
T KOG2041|consen 304 LKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFE 382 (1189)
T ss_pred EecCCceeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhccee
Confidence 44456678999998777777665 4556555444431 111111111111000 00 0001224
Q ss_pred eEEEeCCCCEEEEeecCceEEEEEc-CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 451 DIAFNHDGGLVALRAENYCIHFYSL-LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
++++..+.-.|+.-..++.+.-++. ++...+..+..+..--.+.+..-..|.-.-..-++.+++.++. .
T Consensus 383 ~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~----------e 452 (1189)
T KOG2041|consen 383 NMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASE----------E 452 (1189)
T ss_pred ehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecc----------c
Confidence 5555555555555556666655522 2222233333322211111111112222222335666676652 3
Q ss_pred EEEEEEecCCCceeE-------------------------E--EEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 530 CLKFWVSGTQNKEFT-------------------------L--STIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~-------------------------~--~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
.+.+|.....+.... + .+....|. ..+|..++.+ .++|..+-..|.|.-|
T Consensus 453 ~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~-~DpICAl~~s--dk~l~vareSG~I~ry 529 (1189)
T KOG2041|consen 453 RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGS-KDPICALCIS--DKFLMVARESGGIYRY 529 (1189)
T ss_pred cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccC-CCcceeeeec--ceEEEEEeccCceEEE
Confidence 567776653322110 0 01112344 5677777775 5688888899999999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC---CCeEEE-EeccccCceeEEEE
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD---RNVLVA-VIGETLTPIMNMSF 657 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~---~~~~~~-~l~~~~~~v~~~~~ 657 (762)
.+.+.......+ -...+..++..-+...+|.-. -|.+.+.|+. +|..+. .++.....|+++.|
T Consensus 530 Sl~nv~l~n~y~------------~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~W 597 (1189)
T KOG2041|consen 530 SLNNVVLTNSYP------------VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEW 597 (1189)
T ss_pred Eecceeeeeccc------------cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhh
Confidence 998876655442 356788999988888888877 7888888776 344443 44445667999999
Q ss_pred eCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 658 VGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 658 s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
..|...|+.--+... ++|++-...+.
T Consensus 598 a~dNp~llAlmeKtr--myifrgndpeE 623 (1189)
T KOG2041|consen 598 AQDNPNLLALMEKTR--MYIFRGNDPEE 623 (1189)
T ss_pred ccCCchHHhhhhhce--EEEecCcCccc
Confidence 998877666555444 78886555433
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=5.2e-11 Score=120.51 Aligned_cols=289 Identities=15% Similarity=0.168 Sum_probs=181.1
Q ss_pred ccccEEEEec--CCccccceeeeccCCCceEEEECCCCCEEEEE-e----CCeEEEEEccCc--hhhhheeeeeeeccCc
Q 040987 212 MNGRICKCNL--TESRLAGGVTLAEMKEPQVITISSSGKYFGIR-K----QRKLLIWKVPDV--EAERVVMRKITLHHTK 282 (762)
Q Consensus 212 ~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~----~~~i~iwd~~~~--~~~~~~~~~~~~~~~~ 282 (762)
..+.|..|++ ++++...............++++|++++|.+. . ++.|..|++... +.. .+.. ......
T Consensus 11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~--~~~~-~~~~g~ 87 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT--LLNS-VPSGGS 87 (345)
T ss_dssp SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE--EEEE-EEESSS
T ss_pred CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE--Eeee-eccCCC
Confidence 4478888877 55555433334466778889999999999754 2 479999998875 322 2222 222445
Q ss_pred CeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 283 KLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....++++|++++|+++.. +|.|.++++.....+........... .-...-+.......++.|
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g----------------~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEG----------------SGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEE----------------EESSTTTTSSTCEEEEEE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCC----------------CCCcccccccccceeEEE
Confidence 6678999999999998864 89999999976433221100000000 000000011234678999
Q ss_pred ecCCCEEEEEec-CCeEEEEecCCCc--ee----ccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcC--CceE--E
Q 040987 362 SSDGAYLYSGGK-EGVLVVWQLDTGK--KK----FLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMP--SMEI--I 429 (762)
Q Consensus 362 s~~g~~l~s~~~-dg~i~~wd~~~~~--~~----~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~--~~~~--~ 429 (762)
+|||+++++... ...|.+|+++... .. ...........++|+|+++++++..+ ++.|.++++. ++.. +
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 999999888653 2579999987765 31 13355667899999999999887765 6789999988 4432 2
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcC-CCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLL-DDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
..+...... .........++++|||++|.++. ..+.|.+|++. ....+..+...... ....+.++++
T Consensus 232 ~~~~~~~~~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-------G~~Pr~~~~s 300 (345)
T PF10282_consen 232 QTISTLPEG----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-------GKFPRHFAFS 300 (345)
T ss_dssp EEEESCETT----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-------SSSEEEEEE-
T ss_pred EEeeecccc----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-------CCCccEEEEe
Confidence 333221110 00112578899999999988765 45789999994 32333333322110 2337899999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
|+|++|+++.. .++.|.+|+++.
T Consensus 301 ~~g~~l~Va~~--------~s~~v~vf~~d~ 323 (345)
T PF10282_consen 301 PDGRYLYVANQ--------DSNTVSVFDIDP 323 (345)
T ss_dssp TTSSEEEEEET--------TTTEEEEEEEET
T ss_pred CCCCEEEEEec--------CCCeEEEEEEeC
Confidence 99999999875 667899998853
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=5.6e-11 Score=110.93 Aligned_cols=285 Identities=13% Similarity=0.155 Sum_probs=188.9
Q ss_pred CccccEEEEecCC--ccccceeeeccCCCceEEEECCCCCEEEEE----eCCeEEEEEccC--chhhhheeeeeeeccCc
Q 040987 211 TMNGRICKCNLTE--SRLAGGVTLAEMKEPQVITISSSGKYFGIR----KQRKLLIWKVPD--VEAERVVMRKITLHHTK 282 (762)
Q Consensus 211 ~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~spdg~~la~~----~~~~i~iwd~~~--~~~~~~~~~~~~~~~~~ 282 (762)
..+..|.+|++.+ |+........+.+.++-++|+|++++|-++ .++.|..|.++. +... .+.+. .....
T Consensus 13 ~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~ln~~-~~~g~ 89 (346)
T COG2706 13 RESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FLNRQ-TLPGS 89 (346)
T ss_pred cCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--Eeecc-ccCCC
Confidence 3467899998873 444434566788899999999999988643 368888888875 4432 11111 12233
Q ss_pred CeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc------
Q 040987 283 KLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE------ 355 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------ 355 (762)
+-+.++++++|++|+++.. .|.|.++.+.....+... .....|.+.
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~---------------------------v~~~~h~g~~p~~rQ 142 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV---------------------------VQVVKHTGSGPHERQ 142 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccc---------------------------eeeeecCCCCCCccc
Confidence 4488999999999998865 588999988653222111 111112222
Q ss_pred ----eeEEEEecCCCEEEEEecC-CeEEEEecCCCceec----cCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCC
Q 040987 356 ----VSVLIFSSDGAYLYSGGKE-GVLVVWQLDTGKKKF----LPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPS 425 (762)
Q Consensus 356 ----v~~~~~s~~g~~l~s~~~d-g~i~~wd~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~ 425 (762)
+....++|++++|++.+-. -.|.+|+++.|.... ....+.....|.|+|++++.++.++ +++|.+|..+.
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 6788999999999987642 469999999887632 2345567889999999999888766 88999999887
Q ss_pred c-eEEEEEccCCC-CCCCCCcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 426 M-EIIRSISGIKL-PCPLPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 426 ~-~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
. ..+..++.+.. +.. .........+.+++||++|.++.+ ...|.+|.+........+......+ ....+
T Consensus 223 ~~g~~~~lQ~i~tlP~d--F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te------g~~PR 294 (346)
T COG2706 223 AVGKFEELQTIDTLPED--FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE------GQFPR 294 (346)
T ss_pred CCceEEEeeeeccCccc--cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC------CcCCc
Confidence 3 33333332221 111 111246678999999999887643 2478888876553322222211111 33468
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
.+.|+|+|++|+++.. ....|.+|..+....
T Consensus 295 ~F~i~~~g~~Liaa~q--------~sd~i~vf~~d~~TG 325 (346)
T COG2706 295 DFNINPSGRFLIAANQ--------KSDNITVFERDKETG 325 (346)
T ss_pred cceeCCCCCEEEEEcc--------CCCcEEEEEEcCCCc
Confidence 8999999999999985 445689988775443
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=3.6e-13 Score=123.17 Aligned_cols=292 Identities=15% Similarity=0.181 Sum_probs=182.3
Q ss_pred ccccCCceeecCCCEEEEEe-CCEEEEEEcccce-----EEeeecCCc------------cceeEEEEeCCCCcccceee
Q 040987 73 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-----QISSLEGHK------------APVTTVIVVPASTPATKILS 134 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-----~~~~l~~h~------------~~V~~v~~s~~~~~~~~l~~ 134 (762)
..+.+++.|..+|.+||+|. +|.|.++.-+... ....++.|. ..|..+.|.++++ ..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n----~a- 99 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN----LA- 99 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC----cc-
Confidence 33444599999999999999 7999999754322 334455553 4589999999984 32
Q ss_pred eEEeeecCCeEEEEeCCCcceEEE---EEec---cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCC
Q 040987 135 YCWTASLDGTIKYWDFSVPELLKT---IDVK---FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208 (762)
Q Consensus 135 ~l~s~s~d~~i~vWd~~~~~~~~~---~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (762)
.+.....|.+|++|-+........ +... ..+.++..|-
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~------------------------------------ 143 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPV------------------------------------ 143 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeecee------------------------------------
Confidence 444567799999999876543220 0000 0111111110
Q ss_pred CCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee----eeccCcCe
Q 040987 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI----TLHHTKKL 284 (762)
Q Consensus 209 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~----~~~~~~~v 284 (762)
.+..+-.+. ..+.+.....|+-.|.++.++.|++.+.+++|=.|.+|++.-..... .+..+ ...-..-|
T Consensus 144 ~~~~~~~ve------a~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sF-nIVDIKP~nmEeLteVI 216 (433)
T KOG1354|consen 144 EGRHDLEVE------ASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSF-NIVDIKPANMEELTEVI 216 (433)
T ss_pred eccccceee------eeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCce-eEEEccccCHHHHHHHH
Confidence 001111110 11222345568889999999999999999999999999987433210 00011 11123468
Q ss_pred EEEEEcCC-CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 285 TVLAFHPT-QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 285 ~~~~~sp~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
++..|+|. .+.++..+..|+|++-|++.......+..... ...++....-+.+--..|..+.|++
T Consensus 217 TsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE--------------epedp~~rsffseiIsSISDvKFs~ 282 (433)
T KOG1354|consen 217 TSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE--------------EPEDPSSRSFFSEIISSISDVKFSH 282 (433)
T ss_pred hhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc--------------cccCCcchhhHHHHhhhhhceEEcc
Confidence 88999994 56778888999999999974422111110000 0111222233444556789999999
Q ss_pred CCCEEEEEecCCeEEEEecCC-Cce-eccCCC------------CC---CeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 364 DGAYLYSGGKEGVLVVWQLDT-GKK-KFLPRI------------GS---PLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~-~~~-~~~~~~------------~~---~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
+|+++++-+. -+|++||+.. .++ ...+-| .. .-..++|+.++.++++|+..+..++|+...|
T Consensus 283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9999988654 6899999843 222 112111 11 2345889999999999999999999997665
Q ss_pred e
Q 040987 427 E 427 (762)
Q Consensus 427 ~ 427 (762)
.
T Consensus 362 s 362 (433)
T KOG1354|consen 362 S 362 (433)
T ss_pred c
Confidence 4
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.8e-11 Score=114.09 Aligned_cols=287 Identities=18% Similarity=0.181 Sum_probs=185.9
Q ss_pred CCeEEEEecCCCc--e--eccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCC--ceEEEEEccCCCCCCCCCc
Q 040987 374 EGVLVVWQLDTGK--K--KFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPS--MEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 374 dg~i~~wd~~~~~--~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~ 444 (762)
++-|++|++.+.. . ..+.......+-++|+|+++.|+++..+ |.|..|.++. |++... .....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l-n~~~~~------ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL-NRQTLP------ 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe-eccccC------
Confidence 4679999988433 2 3445566778899999999999887654 6777777764 443222 111111
Q ss_pred ccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeE-Eeecc-cccCCCCc-ceeEEEEEEecCCCeEEEEeeec
Q 040987 445 YKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEV-QVCER-NHQPGDDV-TVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~-~~~~~-~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
......+++++++++++++. ..|.|.++-+.....+... ..... +..++... ..-+....+.|++++|++.+-
T Consensus 88 -g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-- 164 (346)
T COG2706 88 -GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-- 164 (346)
T ss_pred -CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--
Confidence 02337899999999998886 4589999999764333222 11110 00011111 223788899999999999875
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccc-cccccccCCce
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDE-LQQKDLQSSGW 598 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~ 598 (762)
+...|.+|++..+.....-.... .. ...-+-+.|+|++++....+ -+++|.+|.++.. .....++ ..
T Consensus 165 ------G~Dri~~y~~~dg~L~~~~~~~v--~~-G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ--~i 233 (346)
T COG2706 165 ------GTDRIFLYDLDDGKLTPADPAEV--KP-GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ--TI 233 (346)
T ss_pred ------CCceEEEEEcccCcccccccccc--CC-CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee--ee
Confidence 44589999999776543322221 22 45678899999999877765 4889999999874 2222111 00
Q ss_pred eeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC--CeEE--EEeccccCceeEEEEeCCCCEEEEEEcCCC
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR--NVLV--AVIGETLTPIMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~--~~~~--~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~ 672 (762)
.+....-....+..++.++|||++|.++. ...|.+|.+.. +++. .....+...-+.+.|+++|++|+.++.|+.
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred ccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 01111112345677899999999999986 56888887654 3322 122223333578999999999999998885
Q ss_pred CeEEEEECCC
Q 040987 673 PQLSVWNMSK 682 (762)
Q Consensus 673 ~~v~vwd~~~ 682 (762)
.|.+|.++.
T Consensus 314 -~i~vf~~d~ 322 (346)
T COG2706 314 -NITVFERDK 322 (346)
T ss_pred -cEEEEEEcC
Confidence 588886653
No 251
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=3.4e-15 Score=141.66 Aligned_cols=204 Identities=12% Similarity=0.180 Sum_probs=176.6
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
....+.++.+|++|+.++..|.|..+|..+.....++.. ...|.++.|-.+.+++|++ .
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-----------~Etv~Dv~~LHneq~~AVA----------Q 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-----------METVRDVTFLHNEQFFAVA----------Q 189 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-----------hhhhhhhhhhcchHHHHhh----------h
Confidence 446789999999999999999999999999988887766 4458999999999999999 5
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
...++|||-... .+..+.. ...|..+.|-|..-+|++++..|.++--|+.+|+.+..+. ..
T Consensus 190 K~y~yvYD~~Gt-ElHClk~-------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-----------t~ 250 (545)
T KOG1272|consen 190 KKYVYVYDNNGT-ELHCLKR-------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-----------TG 250 (545)
T ss_pred hceEEEecCCCc-EEeehhh-------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-----------cc
Confidence 679999997754 3344432 4578899999999999999999999999999999887763 34
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
.+.+..|.-.|-+..+-+|. .|+|.+|.....+++..+-.|.++|.++++.++|++++|+|.|.. ++|||+.+....
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~--~kIWDlR~~~ql 328 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK--VKIWDLRNFYQL 328 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc--eeEeeecccccc
Confidence 67788889899888888897 999999999999999988899999999999999999999999998 999999998877
Q ss_pred eEEEEee
Q 040987 687 WSYLLHV 693 (762)
Q Consensus 687 ~~~~~~~ 693 (762)
.++..+.
T Consensus 329 ~t~~tp~ 335 (545)
T KOG1272|consen 329 HTYRTPH 335 (545)
T ss_pred ceeecCC
Confidence 7766643
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.5e-12 Score=134.35 Aligned_cols=232 Identities=16% Similarity=0.097 Sum_probs=147.3
Q ss_pred eEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcc
Q 040987 54 LCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPA 129 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~ 129 (762)
.|.++|........+..+...+.+ ..|||||++||+.. + ..|.+||+.+++... +....+.....+|+|||+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~-p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMS-PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccC-ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC--
Confidence 567778887777777788888887 99999999999886 2 479999998886432 222233445789999995
Q ss_pred cceeeeEEeeecCCe--EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 130 TKILSYCWTASLDGT--IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 130 ~~l~~~l~s~s~d~~--i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
.++++.+.++. |.+||+.+++..+ +
T Consensus 275 ----~La~~~~~~g~~~Iy~~dl~tg~~~~-l------------------------------------------------ 301 (448)
T PRK04792 275 ----KLALVLSKDGQPEIYVVDIATKALTR-I------------------------------------------------ 301 (448)
T ss_pred ----EEEEEEeCCCCeEEEEEECCCCCeEE-C------------------------------------------------
Confidence 34445566664 6666766554221 1
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe--C--CeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--Q--RKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
..+.......+|+|||+.|+... + ..|.++|+.+++.. .+. .....
T Consensus 302 ------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-----~Lt-~~g~~ 351 (448)
T PRK04792 302 ------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-----RLT-FEGEQ 351 (448)
T ss_pred ------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----EEe-cCCCC
Confidence 11122345678999999997543 2 45777788776642 222 12223
Q ss_pred eEEEEEcCCCcEEEEeec-CC--eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 284 LTVLAFHPTQRIVAAGDV-TG--RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~-dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
....+|+|||++|+..+. ++ .|.++|+.+++.. .+... .......
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-------------------------------~lt~~-~~d~~ps 399 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-------------------------------VLTST-RLDESPS 399 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-------------------------------EccCC-CCCCCce
Confidence 445799999999887654 34 4555666554321 11111 1112357
Q ss_pred EecCCCEEEEEecC-C--eEEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 361 FSSDGAYLYSGGKE-G--VLVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 361 ~s~~g~~l~s~~~d-g--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
|+|||+.|+..+.+ + .+++++.+......+....+.+...+|+|
T Consensus 400 ~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 99999988876543 2 47788876555555555555677778876
No 253
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.55 E-value=2.8e-09 Score=119.46 Aligned_cols=441 Identities=11% Similarity=0.074 Sum_probs=240.6
Q ss_pred cCCcceeEEEEecCCC--eEEEEecCCcc-eeee--------ecCcccccCCceeecCCCEEEEEe-CCEEEEE----Ec
Q 040987 38 KPRSRSFIFAVARSSG--LCRTAEYPAVN-SKMI--------RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIF----ST 101 (762)
Q Consensus 38 ~~~~~~~~~a~~~~~g--~i~~~~~~~~~-~~~~--------~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iw----d~ 101 (762)
....+..+++.+.... .|.+....... ...+ ....+.|.+ +.|-+|..-|..+. +|.|.+. |.
T Consensus 30 d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs-~~yl~d~~~l~~~~~~Gdi~~~~~~~~~ 108 (928)
T PF04762_consen 30 DSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVS-FQYLADSESLCIALASGDIILVREDPDP 108 (928)
T ss_pred ecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEE-EEeccCCCcEEEEECCceEEEEEccCCC
Confidence 3333566777775544 34444333221 1111 123466776 88999988777777 7999999 54
Q ss_pred ccc--eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcc
Q 040987 102 STG--LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQ 179 (762)
Q Consensus 102 ~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (762)
.+. +++..+ ..+|.|++||||+ .+|+..+.++++.+-+ .+.+.+.....+..-.
T Consensus 109 ~~~~~E~VG~v---d~GI~a~~WSPD~-------Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~------------- 164 (928)
T PF04762_consen 109 DEDEIEIVGSV---DSGILAASWSPDE-------ELLALVTGEGNLLLMT-RDFDPISEVPLDSDDF------------- 164 (928)
T ss_pred CCceeEEEEEE---cCcEEEEEECCCc-------CEEEEEeCCCEEEEEe-ccceEEEEeecCcccc-------------
Confidence 433 344444 4789999999999 4666677678887764 4455554443321000
Q ss_pred cCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE--EEecCCccccceeeeccCCCceEEEECCCCCEEEEEe---
Q 040987 180 SDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC--KCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--- 254 (762)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~--iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--- 254 (762)
......-+.++....- .-|+..+... +-+....+.-..... ....-..++|-.||+|+|++.
T Consensus 165 ----~~~~~VsVGWGkKeTQ--------F~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 165 ----GESKHVSVGWGKKETQ--------FHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred ----CCCceeeeccCcccCc--------cCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0000111111111000 1111111100 011111100011122 444567899999999998541
Q ss_pred ----CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec---CCeEEEEeccCCceeecccccccccc
Q 040987 255 ----QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV---TGRILIWRGFGDRTFATNDNKMNLNL 327 (762)
Q Consensus 255 ----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~v~vw~~~~~~~~~~~~~~~~~~~ 327 (762)
...++||+-+ |+.. .....-.+--.+++|-|.|+++|+... ...|.+|.-.+-+.-.
T Consensus 232 ~~~~~R~iRVy~Re-G~L~-----stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge---------- 295 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQ-----STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE---------- 295 (928)
T ss_pred CCCceeEEEEECCC-ceEE-----eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee----------
Confidence 2578999877 3322 222222333457899999999998754 3456777644332111
Q ss_pred cccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--ec--cCCCCCCeEEEEeC
Q 040987 328 MNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--KF--LPRIGSPLLYFTES 403 (762)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--~~--~~~~~~~v~~~~~s 403 (762)
..-.+......|..+.|++|+..|+..-.|. |.+|-..+... +. .......+..+.|+
T Consensus 296 -----------------F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wd 357 (928)
T PF04762_consen 296 -----------------FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWD 357 (928)
T ss_pred -----------------EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEEC
Confidence 1111223456789999999999999877654 99998887654 11 12223345559999
Q ss_pred CCC-CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee
Q 040987 404 PDP-SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 404 ~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 482 (762)
|.. ..|.+.+.++.+..++..-. ...+. ..+|+..-++..-+...+.+-.++..-...
T Consensus 358 pe~p~~L~v~t~~g~~~~~~~~~~----v~~s~-----------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 358 PEKPLRLHVLTSNGQYEIYDFAWD----VSRSP-----------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPP 416 (928)
T ss_pred CCCCCEEEEEecCCcEEEEEEEEE----EEecC-----------------CCCccCceEEEEEeCCeEEEecccccCCCc
Confidence 954 45777767677777665411 00000 011212222222233446665555433222
Q ss_pred eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce--------eEEEEE-----e
Q 040987 483 EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--------FTLSTI-----V 549 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--------~~~~~~-----~ 549 (762)
.+....-.. ...|.+++|++++..+++.. .++.+.+|........ ..+... .
T Consensus 417 PMs~~~l~~------~~~v~~vaf~~~~~~~avl~---------~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (928)
T PF04762_consen 417 PMSSYELEL------PSPVNDVAFSPSNSRFAVLT---------SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISD 481 (928)
T ss_pred hHhceEEcC------CCCcEEEEEeCCCCeEEEEE---------CCCCEEEEEecCCCcccccCcchhhhcccccccccc
Confidence 211111111 56799999999998888877 7888999986543321 011000 0
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccc
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDE 587 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~ 587 (762)
.... ...+..++|..+...++....+ ..+.++++...
T Consensus 482 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 482 SELP-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred cccc-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 0111 3467888998888777766654 56778877433
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=1.6e-12 Score=137.01 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=145.5
Q ss_pred CCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCCC
Q 040987 52 SGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAST 127 (762)
Q Consensus 52 ~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~ 127 (762)
...|.++|........+..+...+.. ++|||||++||++. + ..|++||+++++... +..+.+.+.+++|+|||+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~-p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILS-PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceec-ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 34688888887777777778777886 99999999999987 2 589999999886543 334556677899999995
Q ss_pred cccceeeeEEeeecCC--eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCcc
Q 040987 128 PATKILSYCWTASLDG--TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKK 205 (762)
Q Consensus 128 ~~~~l~~~l~s~s~d~--~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
.++++.+.++ .|.+||+.+++... +
T Consensus 247 ------~l~~~~~~~~~~~i~~~d~~~~~~~~-l---------------------------------------------- 273 (417)
T TIGR02800 247 ------KLAVSLSKDGNPDIYVMDLDGKQLTR-L---------------------------------------------- 273 (417)
T ss_pred ------EEEEEECCCCCccEEEEECCCCCEEE-C----------------------------------------------
Confidence 3444555444 47777776654321 1
Q ss_pred CCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC----CeEEEEEccCchhhhheeeeeeeccC
Q 040987 206 EPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ----RKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 206 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
..+........|+|||+.|+...+ ..|+++++.+++.. ....+.
T Consensus 274 --------------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~~ 321 (417)
T TIGR02800 274 --------------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFRG 321 (417)
T ss_pred --------------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecCC
Confidence 111122335689999999875432 36888888776532 233345
Q ss_pred cCeEEEEEcCCCcEEEEeecCC---eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTG---RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
..+..+.|+|+|++++.++.++ .|.+||+.++... .+... .....
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-------------------------------~l~~~-~~~~~ 369 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-------------------------------VLTDT-GLDES 369 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-------------------------------EccCC-CCCCC
Confidence 5677889999999999887765 7888888654221 11111 12334
Q ss_pred EEEecCCCEEEEEecCC---eEEEEecCCCce
Q 040987 359 LIFSSDGAYLYSGGKEG---VLVVWQLDTGKK 387 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg---~i~~wd~~~~~~ 387 (762)
..|+|||+.|+..+.++ .+++.+......
T Consensus 370 p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~ 401 (417)
T TIGR02800 370 PSFAPNGRMILYATTRGGRGVLGLVSTDGRFR 401 (417)
T ss_pred ceECCCCCEEEEEEeCCCcEEEEEEECCCcee
Confidence 68999999988877653 466666554333
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.3e-12 Score=136.63 Aligned_cols=235 Identities=13% Similarity=0.108 Sum_probs=154.2
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.|.++|.+......+......+....|+|||+.|+..+.+ ..|+++|+.+++.... .... +.....
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~----------g~~~~~ 267 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFP----------GINGAP 267 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCC----------CCcCCe
Confidence 6788888777666666777789999999999999876543 2588999988765332 2211 233568
Q ss_pred EEeCCCCEEEEe-ecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 453 AFNHDGGLVALR-AENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 453 ~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
+|+|||+.|+.. ..++ .|+++|+.+++.. .+... .......+|+|||+.|+..+.. +...
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~----------~~~~~~p~wSpDG~~I~f~s~~------~g~~ 330 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRH----------RAIDTEPSWHPDGKSLIFTSER------GGKP 330 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccC----------CCCccceEECCCCCEEEEEECC------CCCc
Confidence 999999988764 4455 4888888776432 22111 2235667999999998877621 0234
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-C--cEEEEEcccccccccccCCceeeeeeccc
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-G--DFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.|.++|+.+++... +. ..++ .....+|+|||++|+..+.+ + .|.++|+.++.......
T Consensus 331 ~Iy~~dl~~g~~~~-Lt---~~g~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~------------ 391 (448)
T PRK04792 331 QIYRVNLASGKVSR-LT---FEGE---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS------------ 391 (448)
T ss_pred eEEEEECCCCCEEE-Ee---cCCC---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC------------
Confidence 67777877665322 21 1222 33457899999998887653 3 35567777665432211
Q ss_pred CCCCeEEEEEcCCCcEEEEEc--CC--eEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 607 KKKAMTAAAFSADGSVLAVAA--ET--VITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~--d~--~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
........|+|||+.|+... ++ .+++++.+ |+....+..+.+.+...+|+|
T Consensus 392 -~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 392 -TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 11122458999999988765 33 47788874 666666766666778888887
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.1e-12 Score=136.06 Aligned_cols=232 Identities=14% Similarity=0.140 Sum_probs=151.9
Q ss_pred eEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcc
Q 040987 54 LCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPA 129 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~ 129 (762)
.|.++|........+..+...+.. ++|||||++||+.+ + ..|.+||+.+++... +....+.+...+|+|||+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~-p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILS-PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECCCCCCceEEecCCCceee-eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC--
Confidence 477788887777778788888886 99999999999887 2 479999998886533 333344566789999995
Q ss_pred cceeeeEEeeecCC--eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 130 TKILSYCWTASLDG--TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 130 ~~l~~~l~s~s~d~--~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
.++++.+.++ .|.+||+.+++... +.
T Consensus 256 ----~la~~~~~~g~~~Iy~~d~~~~~~~~-lt----------------------------------------------- 283 (430)
T PRK00178 256 ----KLAFVLSKDGNPEIYVMDLASRQLSR-VT----------------------------------------------- 283 (430)
T ss_pred ----EEEEEEccCCCceEEEEECCCCCeEE-cc-----------------------------------------------
Confidence 3334555554 57777877665321 11
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
.+........|+|||+.|+... ...|+++++.+++.. .... ....
T Consensus 284 -------------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-----~lt~-~~~~ 332 (430)
T PRK00178 284 -------------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-----RVTF-VGNY 332 (430)
T ss_pred -------------------------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----Eeec-CCCC
Confidence 1122234568999999987543 236778888777643 2221 1223
Q ss_pred eEEEEEcCCCcEEEEeecC-C--eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 284 LTVLAFHPTQRIVAAGDVT-G--RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~d-g--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
.....|+|||++|+..+.+ + .|.+||+.+++... +. +........
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-------------------------------lt-~~~~~~~p~ 380 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-------------------------------LT-DTSLDESPS 380 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-------------------------------cc-CCCCCCCce
Confidence 4467899999999877643 3 57888887654211 11 111122458
Q ss_pred EecCCCEEEEEecC---CeEEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 361 FSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 361 ~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
|+|||+.++..+.+ ..++++++.......+....+.+...+|+|
T Consensus 381 ~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 381 VAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 99999999877654 357788886655545554455667777776
No 257
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.54 E-value=2.4e-09 Score=119.99 Aligned_cols=326 Identities=13% Similarity=0.064 Sum_probs=187.9
Q ss_pred cCcCeEEEEEcCCCcEEEEeec------CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDV------TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
+.+.-..++|-.||+++|+.+- -..++||+-++. ... +-..-.
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-L~s------------------------------tSE~v~ 256 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-LQS------------------------------TSEPVD 256 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-EEe------------------------------ccccCC
Confidence 4446678999999999998754 257999986522 111 111111
Q ss_pred cceeEEEEecCCCEEEEEec---CCeEEEEecCCCce----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 354 SEVSVLIFSSDGAYLYSGGK---EGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~---dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
+--.+++|-|.|++|++... ...|.+|.-..-+. .........+..+.|++|+..|++...+. |.+|-..+.
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 22346899999999998764 34577776443222 11224456899999999999999976554 999998874
Q ss_pred e--EEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 427 E--IIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 427 ~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
. +.+.+.-... ..+..+.|+|. ...|.+.+.+|.+..++..-. .. .+
T Consensus 336 HWYLKqei~~~~~---------~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-------v~--------------~s 385 (928)
T PF04762_consen 336 HWYLKQEIRFSSS---------ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-------VS--------------RS 385 (928)
T ss_pred EEEEEEEEEccCC---------CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-------EE--------------ec
Confidence 3 2222221110 23445999995 445777777677776665211 00 00
Q ss_pred EEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 504 VALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 504 ~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
-..+| |...+++. +...+++-.++....+..+....+. - ...|.+++|++++..+++-..||.+.+|
T Consensus 386 ~~~~~~D~g~vaVI----------DG~~lllTpf~~a~VPPPMs~~~l~-~-~~~v~~vaf~~~~~~~avl~~d~~l~~~ 453 (928)
T PF04762_consen 386 PGSSPNDNGTVAVI----------DGNKLLLTPFRRAVVPPPMSSYELE-L-PSPVNDVAFSPSNSRFAVLTSDGSLSIY 453 (928)
T ss_pred CCCCccCceEEEEE----------eCCeEEEecccccCCCchHhceEEc-C-CCCcEEEEEeCCCCeEEEEECCCCEEEE
Confidence 00112 11223333 2346777666655433222111111 1 5689999999999889999999999999
Q ss_pred Eccccccccccc-CCceeeee------ecccCCCCeEEEEEcCCCcEEEEEc-C---CeEEEEeCCCCe---EEEEeccc
Q 040987 583 ICNDELQQKDLQ-SSGWSCHA------VGSYKKKAMTAAAFSADGSVLAVAA-E---TVITLWDPDRNV---LVAVIGET 648 (762)
Q Consensus 583 d~~~~~~~~~~~-~~~~~~~~------~~~~~~~~i~~~~~s~dg~~la~~~-d---~~i~iwd~~~~~---~~~~l~~~ 648 (762)
...........+ .....+.. ........+..++|..+..+++... + ..+.++++...+ .+.....-
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 533 (928)
T PF04762_consen 454 EWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEV 533 (928)
T ss_pred EecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEecc
Confidence 865543221000 00000000 0112345678899988887777665 3 578888875332 22222223
Q ss_pred cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 649 LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 649 ~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.+.+..+...++...++.-..||. +...+..
T Consensus 534 ~~~~~~~~~~~~~~~~~~q~~~G~--v~~~~~~ 564 (928)
T PF04762_consen 534 DGVVLIISSSPDSGSLYIQTNDGK--VFQLSSD 564 (928)
T ss_pred CceEEEEeeCCCCcEEEEEECCCE--EEEeecC
Confidence 344555555555544666666765 6644433
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=8.4e-13 Score=120.17 Aligned_cols=157 Identities=15% Similarity=0.293 Sum_probs=110.8
Q ss_pred eeEEEeCCCCEEEEeec----------CceEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 450 RDIAFNHDGGLVALRAE----------NYCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..+.|+|+|.+|++-.. -+...+|.++.. .....+.... ..+|.+++|+|+|+.+|+...
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~---------~~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK---------EGPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC---------CCceEEEEECcCCCEEEEEEc
Confidence 56889999988776544 134455555322 2222222211 346999999999999877642
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccccccccccC
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~ 595 (762)
. .+..|.+||++ .+.+..+ + ...++.+.|+|+|++|++++.+ |.+.+||.++.+.+...+
T Consensus 80 ~-------~~~~v~lyd~~-~~~i~~~-------~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~- 142 (194)
T PF08662_consen 80 S-------MPAKVTLYDVK-GKKIFSF-------G-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE- 142 (194)
T ss_pred c-------CCcccEEEcCc-ccEeEee-------c-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-
Confidence 1 45689999997 4444433 2 4577889999999999998754 679999999777665552
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEEEc-------CCeEEEEeCCCCeEEEEe
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-------ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-------d~~i~iwd~~~~~~~~~l 645 (762)
...++.++|||||++++++. |..++||+.. |+++...
T Consensus 143 ------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 143 ------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 34578999999999999863 6789999986 6655443
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=8.8e-12 Score=131.05 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=143.1
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCc---eEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEP---QVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
+.++.++.+.+||...+.............. .-+.++++.-+++++ .-+.|.+|+....+.. ..+.+|.+.
T Consensus 103 ~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-----~~l~GHeG~ 177 (967)
T KOG0974|consen 103 ALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP-----IRLKGHEGS 177 (967)
T ss_pred EEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-----ceecccCCc
Confidence 3345778888999888877744443333322 233456777778765 6799999999833322 357899999
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
|.++.|+-||+++++.+.|.++++|++++.+... ...-+|+.+|+.++|.|
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----------------------------~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----------------------------CTGFGHSARVWACCFLP 228 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccC-----------------------------cccccccceeEEEEecc
Confidence 9999999999999999999999999998775332 35567999999999998
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCC-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRI-GSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+ ++++++.|.+.++|+....+......| ...+..++..++...+++++.|+.+++|++..
T Consensus 229 n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8 899999999999997776555444343 45799999999999999999999999999875
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=7.1e-12 Score=129.81 Aligned_cols=240 Identities=13% Similarity=-0.003 Sum_probs=154.1
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEE---EEecCC--cEEEEEcCCceEEEEEccCCCCCCCCCcccCce
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSS---ISCADN--QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
..|.+.|.+.+....+...........|||||+.++ +...++ .|++.++.+++..+... .. +..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~----------g~~ 233 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQ----------GNQ 233 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CC----------CCc
Confidence 468888988887777766677778899999997532 333333 58888888765443322 22 344
Q ss_pred eeEEEeCCCCEEEEeec-----CceEEEEEcCCCC--ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 450 RDIAFNHDGGLVALRAE-----NYCIHFYSLLDDR--GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
...+|+|||+.|+..+. +..+..|++..+. ....+.... .......+|+|||+.|+..+.
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~---------~~~~~~p~wSPDG~~Laf~s~---- 300 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA---------FGTQGNPSFSPDGTRLVFVSN---- 300 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC---------CCCcCCeEECCCCCEEEEEEC----
Confidence 56899999999887653 2234446766431 112221110 122356799999999888762
Q ss_pred cCCCcee--EEEEEEecCC-CceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccccccccccCC
Q 040987 523 EGIGSLV--CLKFWVSGTQ-NKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 523 ~~~~~d~--~i~iwd~~~~-~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~ 596 (762)
.++ .|.++++... .....+ ..+ ...+....|||||+.|+..+.+ ..|.+||+.+++......
T Consensus 301 ----~~g~~~ly~~~~~~~g~~~~~l-----t~~-~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-- 368 (428)
T PRK01029 301 ----KDGRPRIYIMQIDPEGQSPRLL-----TKK-YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-- 368 (428)
T ss_pred ----CCCCceEEEEECcccccceEEe-----ccC-CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--
Confidence 233 4555555422 222222 223 4466789999999999887653 368999998876543321
Q ss_pred ceeeeeecccCCCCeEEEEEcCCCcEEEEEc----CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCC
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADGSVLAVAA----ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSS 661 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~----d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg 661 (762)
....+..+.|+|||++|+... ...|+++|+.+++...... ..+.+...+|+|-.
T Consensus 369 ----------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 369 ----------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred ----------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 123556799999999887543 4679999999887654443 44557788898843
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.52 E-value=1.5e-10 Score=113.33 Aligned_cols=269 Identities=14% Similarity=0.105 Sum_probs=174.7
Q ss_pred CeEEEEecCCcceee-eecCcccccCCceeecCCCEEEEEeC-----------CEEEEEEcccceEEeeecCC-------
Q 040987 53 GLCRTAEYPAVNSKM-IRGGRSYVSSPPAFSNDVKRLLVCTS-----------NTVSIFSTSTGLQISSLEGH------- 113 (762)
Q Consensus 53 g~i~~~~~~~~~~~~-~~~h~~~v~~~~~~s~dg~~la~~~~-----------~~i~iwd~~~~~~~~~l~~h------- 113 (762)
+.|.+.|..+.+.+. +.....+ .. + +||||+.|..+.. ..|.|||+++++.+.++.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-ce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 899999999977764 3333222 22 4 9999998877654 79999999999999888732
Q ss_pred ccceeEEEEeCCCCcccceeeeEEee--ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEE
Q 040987 114 KAPVTTVIVVPASTPATKILSYCWTA--SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYL 191 (762)
Q Consensus 114 ~~~V~~v~~s~~~~~~~~l~~~l~s~--s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (762)
...-..++++||| ++|+.. +.+..|.|.|+.+++.+.++....... .|.
T Consensus 104 ~~~~~~~~ls~dg-------k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~----------------------vy~ 154 (352)
T TIGR02658 104 GTYPWMTSLTPDN-------KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH----------------------IFP 154 (352)
T ss_pred cCccceEEECCCC-------CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE----------------------EEE
Confidence 2234478999999 455544 447999999999999998876432100 000
Q ss_pred EeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE--EeCCeEEEEEccCchhh
Q 040987 192 SVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI--RKQRKLLIWKVPDVEAE 269 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~--~~~~~i~iwd~~~~~~~ 269 (762)
.+.-..+.++.||.++.. ..+|....-..
T Consensus 155 -------------------------------------------t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~------ 185 (352)
T TIGR02658 155 -------------------------------------------TANDTFFMHCRDGSLAKVGYGTKGNPKIKPT------ 185 (352)
T ss_pred -------------------------------------------ecCCccEEEeecCceEEEEecCCCceEEeee------
Confidence 111112244456655542 23344221110
Q ss_pred hheeeeeeeccCcCeE-EEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccce
Q 040987 270 RVVMRKITLHHTKKLT-VLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT 347 (762)
Q Consensus 270 ~~~~~~~~~~~~~~v~-~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (762)
.++.....++. .-.|++ +|+++.+... |.|.+.|+.+....... ...
T Consensus 186 -----~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-------------------------~~~ 234 (352)
T TIGR02658 186 -----EVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-------------------------AIE 234 (352)
T ss_pred -----eeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc-------------------------eee
Confidence 11111000110 004566 8887776655 99999997554322100 000
Q ss_pred ee-------eccccceeEEEEecCCCEEEEEe----------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCC-eE
Q 040987 348 TW-------HWHPSEVSVLIFSSDGAYLYSGG----------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPS-LS 409 (762)
Q Consensus 348 ~~-------~~h~~~v~~~~~s~~g~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 409 (762)
.+ ....+.+.-+++++++++++... ..+.|.++|..+++.......+..+..++++||++ +|
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLL 314 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEE
Confidence 10 12334445599999999988743 12579999999999987777788999999999999 77
Q ss_pred EEEe-cCCcEEEEEcCCceEEEEEc
Q 040987 410 SISC-ADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 410 ~~~~-~d~~i~i~d~~~~~~~~~~~ 433 (762)
++.. .++.|.++|..+++.++.+.
T Consensus 315 yvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEeCCCCCcEEEEECcCCeEEeeec
Confidence 7666 47889999999999998873
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=5e-12 Score=133.15 Aligned_cols=235 Identities=13% Similarity=0.085 Sum_probs=155.8
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.|.++|.+.+....+..+...+....|+|||+.|+..+.+ ..|.+|++.+++.... .... +.....
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~----------g~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFE----------GLNGAP 248 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCC----------CCcCCe
Confidence 5888888877666666777788999999999999876543 3689999988765432 2222 344578
Q ss_pred EEeCCCCEEEEe-ecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 453 AFNHDGGLVALR-AENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 453 ~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
.|+|||+.|+.. ..+| .|+++|+.++... .+.. + ........|+|||+.|+..+.. .+..
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~----~------~~~~~~~~~spDg~~i~f~s~~------~g~~ 311 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTN----H------PAIDTEPFWGKDGRTLYFTSDR------GGKP 311 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-Eccc----C------CCCcCCeEECCCCCEEEEEECC------CCCc
Confidence 999999988754 3344 6888899876532 2211 1 2234567899999988877621 0234
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-C--cEEEEEcccccccccccCCceeeeeeccc
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-G--DFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.|+++++.+++.. .+. ..+ .......|+|||+.|+..+.+ + .|.+||+.++.......
T Consensus 312 ~iy~~d~~~g~~~-~lt---~~~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~------------ 372 (430)
T PRK00178 312 QIYKVNVNGGRAE-RVT---FVG---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD------------ 372 (430)
T ss_pred eEEEEECCCCCEE-Eee---cCC---CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC------------
Confidence 6888888776532 221 112 233457899999999887754 3 47888988765433221
Q ss_pred CCCCeEEEEEcCCCcEEEEEc--C--CeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 607 KKKAMTAAAFSADGSVLAVAA--E--TVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~--d--~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
........|+|||++++..+ + ..++++++..+ ....+..+.+.+...+|+|
T Consensus 373 -~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 373 -TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCC
Confidence 11222568999999998775 2 45777888643 4445555556677888887
No 263
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.1e-13 Score=132.25 Aligned_cols=250 Identities=16% Similarity=0.169 Sum_probs=162.2
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCC--CCCeEEEEecCCcEEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESP--DPSLSSISCADNQVHLL 421 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~ 421 (762)
.+.+.||++.|.++.|+.||.+|++|+.|-.+.|||.-..+... -.+|...|.++.|-| +.+.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 46789999999999999999999999999999999998777653 467888999999988 45788889999999999
Q ss_pred EcCCc----------eEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeeccc
Q 040987 422 KMPSM----------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 422 d~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
|+... +....+..|. ..|..++..|++ +.+.++++||+++-||++....-..-..+...
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht----------~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHT----------DRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred ecccccccccccCccchhhhhhhhh----------hhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 99852 2223334444 678889999988 78899999999999999864321111000000
Q ss_pred ccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEE-EEcCCCC
Q 040987 491 HQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAV-AFHPNRR 568 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~-~~spd~~ 568 (762)
........-...+++++|.. .+||+|+ .+--.++||.+...+...-........ .....|+ -|+|.+-
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGg---------sdpfarLYD~Rr~lks~~s~~~~~~~p-p~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGG---------SDPFARLYDRRRVLKSFRSDGTMNTCP-PKDCRCVRYFSPGHL 262 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecC---------CCchhhhhhhhhhccCCCCCccccCCC-CcccchhheecCccc
Confidence 00000013457889999965 5778887 788999999643211110000000000 1111122 1222211
Q ss_pred eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE-cCCeEEEEeCCCCeEEEE
Q 040987 569 AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-AETVITLWDPDRNVLVAV 644 (762)
Q Consensus 569 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-~d~~i~iwd~~~~~~~~~ 644 (762)
...+|.+.. ....++-++|+|+|.-|.+. +...|+++|+..++....
T Consensus 263 ----kn~~gn~~~-------------------------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 263 ----KNSQGNLDR-------------------------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ----cCccccccc-------------------------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 111111100 01235678999999877666 477899999998765443
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=7.8e-12 Score=129.50 Aligned_cols=242 Identities=11% Similarity=0.094 Sum_probs=149.6
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEE--EEe--C--CEEEEEEcccceEEeeecCCccceeEEEEeCCC
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLL--VCT--S--NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la--~~~--~--~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~ 126 (762)
..|.+.|....+...+..+...... .+|||||+.++ +.+ + ..|.+.++.+|+..+ +....+.....+|||||
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~s-P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSIT-PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCccc-ceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 4678888888777777766666775 99999998633 334 2 579999998776433 33344455678999999
Q ss_pred CcccceeeeEEeeecCC----eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcC
Q 040987 127 TPATKILSYCWTASLDG----TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKS 202 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d~----~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (762)
+ .++++...+| .+.+|++..+..
T Consensus 243 ~------~Laf~s~~~g~~di~~~~~~~~~g~~----------------------------------------------- 269 (428)
T PRK01029 243 K------LLAFISDRYGNPDLFIQSFSLETGAI----------------------------------------------- 269 (428)
T ss_pred C------EEEEEECCCCCcceeEEEeecccCCC-----------------------------------------------
Confidence 5 2333333222 233344433210
Q ss_pred CccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe--CCe--EEEEEccCchhhhheeeeeee
Q 040987 203 HKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--QRK--LLIWKVPDVEAERVVMRKITL 278 (762)
Q Consensus 203 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~~~--i~iwd~~~~~~~~~~~~~~~~ 278 (762)
+... .............+|+|||+.|+... ++. |.++++...... . ..+.
T Consensus 270 ---------------------g~~~-~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~---~-~~lt 323 (428)
T PRK01029 270 ---------------------GKPR-RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS---P-RLLT 323 (428)
T ss_pred ---------------------Ccce-EeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc---e-EEec
Confidence 0000 01111112335679999999988543 454 444455422110 1 2333
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecC---CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVT---GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
.+...+....|||||++|+..+.+ ..|.+||+.+++.. .+......
T Consensus 324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-------------------------------~Lt~~~~~ 372 (428)
T PRK01029 324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-------------------------------QLTTSPEN 372 (428)
T ss_pred cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-------------------------------EccCCCCC
Confidence 444567789999999999876543 46899998776432 22222234
Q ss_pred eeEEEEecCCCEEEEEec---CCeEEEEecCCCceeccCCCCCCeEEEEeCCCC
Q 040987 356 VSVLIFSSDGAYLYSGGK---EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (762)
+....|+|||+.|+.... ...|+++|+.+++...+....+.+...+|+|-.
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 567899999998876443 357999999988877666656667778888753
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=5.1e-12 Score=133.21 Aligned_cols=234 Identities=14% Similarity=0.112 Sum_probs=154.2
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
..|.++|........+..+...+....|+|||++|+..... ..|++||+.+++..... .+. +.+..
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~----------~~~~~ 238 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFP----------GMNGA 238 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCC----------CCccc
Confidence 46888898766666666667778899999999999987654 47999999887654332 222 34567
Q ss_pred EEEeCCCCEEEEe-ecC--ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCce
Q 040987 452 IAFNHDGGLVALR-AEN--YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSL 528 (762)
Q Consensus 452 ~~~s~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d 528 (762)
++|+|||+.|+.. +.+ ..|++||+.++... .+.. + ........|+|||+.|+..+.+ +..
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~----~------~~~~~~~~~s~dg~~l~~~s~~------~g~ 301 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTN----G------PGIDTEPSWSPDGKSIAFTSDR------GGS 301 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCC----C------CCCCCCEEECCCCCEEEEEECC------CCC
Confidence 8999999987754 333 35888998876432 2111 1 1223456899999998877521 023
Q ss_pred eEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC---cEEEEEcccccccccccCCceeeeeecc
Q 040987 529 VCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG---DFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 529 ~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
..|.++|+.+++.. .+ ..+ ......+.|+|||++++.++.++ .|.+||+.++.......
T Consensus 302 ~~iy~~d~~~~~~~-~l-----~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~----------- 363 (417)
T TIGR02800 302 PQIYMMDADGGEVR-RL-----TFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD----------- 363 (417)
T ss_pred ceEEEEECCCCCEE-Ee-----ecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-----------
Confidence 47888888766532 22 123 44667889999999999988775 78889987754322211
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-C---CeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-E---TVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d---~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
........|+|||++|+..+ + ..+++.+.. ++....+..+.+.+..++|
T Consensus 364 --~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 364 --TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred --CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 12234568999999988875 2 346666655 4445555544445555555
No 266
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2.6e-12 Score=120.02 Aligned_cols=253 Identities=13% Similarity=0.141 Sum_probs=177.2
Q ss_pred ccccEEEEecCCccccce-----eeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEE
Q 040987 212 MNGRICKCNLTESRLAGG-----VTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTV 286 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 286 (762)
.+..+.......+.+... ......+.|..++. .||.++++-.+|.+.+|....+.....++... ....++..
T Consensus 77 ~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~ 153 (412)
T KOG3881|consen 77 ADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYD 153 (412)
T ss_pred cCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEeccCCccccccceee--ecCCceee
Confidence 444555555555444422 12223444544444 36777778899999999998554221122122 22356777
Q ss_pred EEEcCCCc-EEEEeecC--CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 287 LAFHPTQR-IVAAGDVT--GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 287 ~~~sp~~~-~l~~~~~d--g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
+.-++... .+|+|+.. ..+.+||++..+.+-...+..+... -+. -.-.++++.|.+
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L-----------------~Lr----VPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL-----------------GLR----VPVWITDIRFLE 212 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc-----------------cce----eeeeeccceecC
Confidence 77777555 55668888 8899999987755543333222110 000 112457788988
Q ss_pred C--CCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE-EccCCCC
Q 040987 364 D--GAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS-ISGIKLP 438 (762)
Q Consensus 364 ~--g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~ 438 (762)
. ...|++++.-+++++||.+.++. ..+.-...++.++...|++++++++...+.+..||.+.++.... +.+..
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t-- 290 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT-- 290 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc--
Confidence 7 78999999999999999997765 23444567899999999999999999999999999999998877 77766
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+.+.++..+|.++++++++-|..++|+|+.+.+.+..... ...++++.+.++
T Consensus 291 --------Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-----------Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 291 --------GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-----------KSRLTFILLRDD 342 (412)
T ss_pred --------CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-----------hccccEEEecCC
Confidence 8999999999999999999999999999999776655433 334666666554
No 267
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=4.8e-12 Score=118.25 Aligned_cols=270 Identities=10% Similarity=0.076 Sum_probs=183.6
Q ss_pred cccceeEEEEecCCC--EEEEEecCCeEEEEecCCCceec-------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 352 HPSEVSVLIFSSDGA--YLYSGGKEGVLVVWQLDTGKKKF-------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 352 h~~~v~~~~~s~~g~--~l~s~~~dg~i~~wd~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
....|..++|.-+++ .+...+.+..+..+.+....... ......+|..+... | ..|+++..+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEe
Confidence 345677788876553 34444355666666665554422 22223345555432 3 3566677899999999
Q ss_pred cCCce----EEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecC--ceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 423 MPSME----IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAEN--YCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 423 ~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
...+. .+..+..+ ..+..+.-++... .+++|+.. ..+.+||+...+.+.+-..........
T Consensus 132 ~k~~d~hss~l~~la~g-----------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L- 199 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-----------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL- 199 (412)
T ss_pred ccCCccccccceeeecC-----------CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc-
Confidence 88433 12222221 2345555555444 56668888 889999999886655543322211100
Q ss_pred CcceeEEEEEEecC--CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 496 DVTVVVTLVALSQD--GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 496 ~~~~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
.....++++.|-+. ...||+++ .-+.+++||.+.++.+...- .+. ...++++...|+++++++|
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T---------~~hqvR~YDt~~qRRPV~~f--d~~---E~~is~~~l~p~gn~Iy~g 265 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATIT---------RYHQVRLYDTRHQRRPVAQF--DFL---ENPISSTGLTPSGNFIYTG 265 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEe---------cceeEEEecCcccCcceeEe--ccc---cCcceeeeecCCCcEEEEe
Confidence 01456788999888 88999998 88999999999876654321 122 5589999999999999999
Q ss_pred eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCce
Q 040987 574 SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPI 652 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v 652 (762)
..-+.+..||++.++..... +.+-.+.|+++..+|.+++||+++ |..|+|+|+++.+++.... -...+
T Consensus 266 n~~g~l~~FD~r~~kl~g~~----------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~l 334 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLGCG----------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRL 334 (412)
T ss_pred cccchhheecccCceeeccc----------cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccc
Confidence 99999999999998876652 345678999999999999999999 9999999999977765443 23345
Q ss_pred eEEEEeCC
Q 040987 653 MNMSFVGS 660 (762)
Q Consensus 653 ~~~~~s~d 660 (762)
+.+.+.++
T Consensus 335 t~il~~~~ 342 (412)
T KOG3881|consen 335 TFILLRDD 342 (412)
T ss_pred cEEEecCC
Confidence 66666553
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=3.7e-12 Score=116.78 Aligned_cols=251 Identities=10% Similarity=0.127 Sum_probs=177.0
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEec-CCCcee--ccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQL-DTGKKK--FLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~-~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
.+...+.+.||.+.++....-|...-+++.+.|.++++|-- +.++.- .....+.++.++.+.++...|+++-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 34566788999999999988887788999999999999953 344432 233456789999999999999999999999
Q ss_pred EEEEcCC----ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCC
Q 040987 419 HLLKMPS----MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPG 494 (762)
Q Consensus 419 ~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 494 (762)
.-+.+.. ....+....|. ..+..+.|+...+++++.+.|..+.---.+.+..+.......
T Consensus 93 tefs~sedfnkm~~~r~~~~h~----------~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~------ 156 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQ----------ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET------ 156 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhh----------cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec------
Confidence 8887653 33344444444 788999999999999999999877665555554433322111
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
..+++.+.-. +...|. ..+.|..-.+......... .+.+| .+.+.+++|.|..+.|.+|.
T Consensus 157 -----~~t~~~~d~~--~~fvGd---------~~gqvt~lr~~~~~~~~i~---~~~~h-~~~~~~l~Wd~~~~~LfSg~ 216 (404)
T KOG1409|consen 157 -----PASALQFDAL--YAFVGD---------HSGQITMLKLEQNGCQLIT---TFNGH-TGEVTCLKWDPGQRLLFSGA 216 (404)
T ss_pred -----cCCCCceeeE--EEEecc---------cccceEEEEEeecCCceEE---EEcCc-ccceEEEEEcCCCcEEEecc
Confidence 0111111111 333333 3445555444433322111 13789 99999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
.|..+.+||+...+..... ..+|...|..+..-+--+.+.+++ ||.|.+||++.
T Consensus 217 ~d~~vi~wdigg~~g~~~e----------l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 217 SDHSVIMWDIGGRKGTAYE----------LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCceEEEeccCCcceeee----------eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999766544333 456888888888878778888887 99999999753
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=6.1e-12 Score=115.31 Aligned_cols=279 Identities=14% Similarity=0.180 Sum_probs=188.0
Q ss_pred CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce-----EEEEEccCCCCCCCCC--cccCceeeEEEeCCCC--EEEEe
Q 040987 394 GSPLLYFTESPDPSLSSISCADNQVHLLKMPSME-----IIRSISGIKLPCPLPE--EYKGLCRDIAFNHDGG--LVALR 464 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~--~l~~~ 464 (762)
..-+.++.|...|.+|++|..+|.|.++.-.... ....++.|.....+.. ..+..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3457889999999999999999999999765422 3344555554332111 1124677888988665 56677
Q ss_pred ecCceEEEEEcCCCCcee---------------eEEeecc-cc----------cCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 465 AENYCIHFYSLLDDRGIS---------------EVQVCER-NH----------QPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~~~---------------~~~~~~~-~~----------~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
+.|.+|++|.+....... .+..... .+ .-...|..-|.++.++.|+..+.++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec--
Confidence 899999999886432211 1110000 00 0112367889999999999999998
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCC----CCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccccccc--
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR----DAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDELQQK-- 591 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~----~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~~~~-- 591 (762)
.|-.|.+|+++-....+.+.. ..++. ..-|++..|+|. .+.++..+..|+|++-|++...+-.
T Consensus 183 --------DdLRINLWnlei~d~sFnIVD--IKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 183 --------DDLRINLWNLEIIDQSFNIVD--IKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred --------cceeeeeccccccCCceeEEE--ccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 577999999986665544432 23331 245888999995 5678888899999999998433211
Q ss_pred --ccc-CCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC-CCeEEEEeccccC------------c---e
Q 040987 592 --DLQ-SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD-RNVLVAVIGETLT------------P---I 652 (762)
Q Consensus 592 --~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~-~~~~~~~l~~~~~------------~---v 652 (762)
.++ .........+..--..|..+.||++|+|+++-+=-+|++||+. ..+++.+.+.|.. . -
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 110 0000001111222467889999999999999887899999994 4566666655532 1 3
Q ss_pred eEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 653 MNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 653 ~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
..++|+.++.+++||+.... ++++++..|...
T Consensus 333 Fec~~sg~~~~v~TGsy~n~--frvf~~~~gsk~ 364 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNV--FRVFNLARGSKE 364 (433)
T ss_pred eEEEEcCCcceEecccccce--EEEecCCCCcce
Confidence 45789999999999999988 999998777543
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.36 E-value=8.8e-10 Score=114.10 Aligned_cols=309 Identities=15% Similarity=0.096 Sum_probs=185.5
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
+..+++++.+|.|..+|..+++..-.. .+.. .....+. .++..++.++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~----------------------------~~~~--~~~~~p~--v~~~~v~v~~ 112 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV----------------------------DLDE--RLSGGVG--ADGGLVFVGT 112 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee----------------------------cCCC--CcccceE--EcCCEEEEEc
Confidence 557888888999999998777644211 0000 0011122 2466788888
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.++.++.+|.++|+..........+.+.-.. .+..+++++.++.+..+|.++|+.+..+......... ......
T Consensus 113 ~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~-----~~~~sp 186 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL-----RGSASP 186 (377)
T ss_pred CCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee-----cCCCCC
Confidence 8999999999999986544444433221111 3456777778999999999999988776543211000 000111
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE-EEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV-TLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
.+. + ..++++..++.+..+|..+++...+.......-.........+ ....+ .+..+.+++ .++.+
T Consensus 187 ~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~---------~~g~l 253 (377)
T TIGR03300 187 VIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS---------YQGRV 253 (377)
T ss_pred EEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE---------cCCEE
Confidence 222 2 3677788889999999999887654332110000000000000 01111 244566665 67899
Q ss_pred EEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCe
Q 040987 532 KFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAM 611 (762)
Q Consensus 532 ~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 611 (762)
..||..+++..+.... . ....+.. ++..++.++.+|.+..+|..+++.+-... . . .....
T Consensus 254 ~a~d~~tG~~~W~~~~-------~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~-------~-~--~~~~~ 313 (377)
T TIGR03300 254 AALDLRSGRVLWKRDA-------S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKND-------E-L--KYRQL 313 (377)
T ss_pred EEEECCCCcEEEeecc-------C-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccc-------c-c--cCCcc
Confidence 9999999987765531 1 1112222 45677888889999999998887543321 0 0 01112
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee-EEEEeCCCCEEEEEEcCCCCeEEEE
Q 040987 612 TAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM-NMSFVGSSEYLVATSWGSKPQLSVW 678 (762)
Q Consensus 612 ~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~-~~~~s~dg~~l~s~~~d~~~~v~vw 678 (762)
.+... .+..|++++ +|.|+++|..+|+.+..+..+...+. +..+. + ..|+.++.||. |+.+
T Consensus 314 ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~--l~~~ 376 (377)
T TIGR03300 314 TAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGD--LYAF 376 (377)
T ss_pred ccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCce--EEEe
Confidence 22222 355777777 99999999999999988876654433 23333 3 35888999987 7665
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.34 E-value=1.2e-10 Score=107.00 Aligned_cols=252 Identities=12% Similarity=0.165 Sum_probs=172.8
Q ss_pred eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCC-CcceEEEEEeccceEEEeecccccCCcccCCC
Q 040987 105 LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFS-VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK 183 (762)
Q Consensus 105 ~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (762)
.+++.++||.+.|+....-|.. .-+++.+.|.++|||--. .++.-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e-------~gv~~~s~drtvrv~lkrds~q~wp-------------------------- 61 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKE-------EGVISVSEDRTVRVWLKRDSGQYWP-------------------------- 61 (404)
T ss_pred hhhhhhcCchhhhhhheeccCC-------CCeEEccccceeeeEEeccccccCc--------------------------
Confidence 3567889999999999998888 577899999999999532 222111
Q ss_pred CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEE
Q 040987 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWK 262 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd 262 (762)
.+......+++++.+.++.+.|.++ ..|++.-+.
T Consensus 62 ---------------------------------------------sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 62 ---------------------------------------------SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred ---------------------------------------------hhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 1222235678889999999988876 678888776
Q ss_pred ccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc
Q 040987 263 VPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD 342 (762)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (762)
+...-.. -...+....|...+..+-|+-..+++++.+.|..+.---.+.+..+-.+
T Consensus 97 ~sedfnk-m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y----------------------- 152 (404)
T KOG1409|consen 97 LSEDFNK-MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY----------------------- 152 (404)
T ss_pred hhhhhhh-cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce-----------------------
Confidence 6532111 0122556689999999999999999999998876643333333211100
Q ss_pred cccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEE
Q 040987 343 ADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQVH 419 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 419 (762)
.+ .....++.+.-. +.+.|...|.|..-.+..... ..+.+|...+.+++|.+....++++..|..+.
T Consensus 153 -----~~---~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 153 -----NF---ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI 222 (404)
T ss_pred -----Ee---eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence 00 000111111111 344455556655554443332 45678889999999999999999999999999
Q ss_pred EEEcCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 420 LLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 420 i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
+||+...+ ....+.+|. ..|..+...+.-+.+++++.||.|.+|++...
T Consensus 223 ~wdigg~~g~~~el~gh~----------~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 223 MWDIGGRKGTAYELQGHN----------DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEeccCCcceeeeeccch----------hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99997543 334556665 67888888888889999999999999998754
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=2e-10 Score=113.81 Aligned_cols=193 Identities=15% Similarity=0.164 Sum_probs=150.3
Q ss_pred CCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE------ec--------------CCCeEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL------SQ--------------DGSLMST 515 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------sp--------------~g~~l~~ 515 (762)
|...++|....||.+++|+...++...++....+. .+...+..| +| |-..++-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~-------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL-------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhc-------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 44568899999999999999998776665443221 222333333 22 2234555
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccC
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 595 (762)
|. ..|.|.+|+...++..+.+.+ ..| .+.|+++.++.+-..|.+++.|+.+..|+...........
T Consensus 76 gt---------~~g~v~~ys~~~g~it~~~st---~~h-~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~- 141 (541)
T KOG4547|consen 76 GT---------PQGSVLLYSVAGGEITAKLST---DKH-YGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK- 141 (541)
T ss_pred ec---------CCccEEEEEecCCeEEEEEec---CCC-CCcceeeecccccCceEecCCceeEEEEecccceeeeeec-
Confidence 55 778999999999998887764 577 8999999999999999999999999999998877665442
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCC-----CCEEEEE-Ec
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGS-----SEYLVAT-SW 669 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~d-----g~~l~s~-~~ 669 (762)
.....+.+++.+|||+.+++++ +.|++||+++++.+..+.||.++|..++|..+ |.++.+. ..
T Consensus 142 ----------~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 142 ----------EQKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred ----------cCCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence 3467788999999999998875 68999999999999999999999999999987 7776664 33
Q ss_pred CCCCeEEEEECCC
Q 040987 670 GSKPQLSVWNMSK 682 (762)
Q Consensus 670 d~~~~v~vwd~~~ 682 (762)
+.. +.+|-++.
T Consensus 211 ~r~--i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERG--ITVWVVEK 221 (541)
T ss_pred ccc--eeEEEEEc
Confidence 333 88887655
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.4e-09 Score=111.81 Aligned_cols=215 Identities=10% Similarity=0.039 Sum_probs=137.8
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCe-EEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSL-SSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
..|.+-|.+......+.... ......|+|||+. ++..+.+ ..|+++|+.+++...... .. +...
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~----------g~~~ 236 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ----------GMLV 236 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC----------CcEE
Confidence 46777777666554444444 7888999999985 6654443 469999998876655443 22 4456
Q ss_pred eEEEeCCCCEEEEeec---CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 451 DIAFNHDGGLVALRAE---NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
...|+|||+.++.... +..|+++|+.++.. ..+... ........|+|||+.|+..+.+ .+
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~----------~~~d~~p~~SPDG~~I~F~Sdr------~g 299 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNY----------PGIDVNGNFVEDDKRIVFVSDR------LG 299 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccC----------CCccCccEECCCCCEEEEEECC------CC
Confidence 6789999998776532 35788889877642 222211 1112345799999988888632 12
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---------CcEEEEEcccccccccccCCce
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---------GDFKVWICNDELQQKDLQSSGW 598 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~ 598 (762)
...|.++|+.+++..... ..+. ....|||||+.|+..+.. ..|.+.|+.++.......
T Consensus 300 ~~~Iy~~dl~~g~~~rlt----~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---- 366 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVV----FHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---- 366 (419)
T ss_pred CceEEEEECCCCCeEeCc----cCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC----
Confidence 347888888877653221 1121 124899999999887654 257888887775433321
Q ss_pred eeeeecccCCCCeEEEEEcCCCcEEEEEc----CCeEEEEeCCCCe
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSVLAVAA----ETVITLWDPDRNV 640 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~la~~~----d~~i~iwd~~~~~ 640 (762)
........|+|||+.|+... ...+.+.+++...
T Consensus 367 ---------~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 367 ---------NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred ---------CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 11223589999999888764 2347777887543
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.6e-09 Score=111.39 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=136.2
Q ss_pred CCeEEEEecCCcceeeeecCcccccCCceeecCCCE-EEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCC
Q 040987 52 SGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKR-LLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 52 ~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~-la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~ 126 (762)
...|.+-|........+.... .... ..|||||+. +++.+ + ..|.++|+.+|+...... ..+......|+|||
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~-~~~~-p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG-LNIF-PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred cceEEEECCCCCceeEEccCC-CeEe-EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 346777777766555454433 5554 999999985 66544 2 579999998887544333 45566778899999
Q ss_pred CcccceeeeEEeeecC--CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCc
Q 040987 127 TPATKILSYCWTASLD--GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHK 204 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d--~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
+ .++++.+.+ ..|.++|+.+++..+ +.
T Consensus 245 ~------~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-------------------------------------------- 273 (419)
T PRK04043 245 S------KLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-------------------------------------------- 273 (419)
T ss_pred C------EEEEEEccCCCcEEEEEECCCCcEEE-cc--------------------------------------------
Confidence 5 333444433 456666666554221 11
Q ss_pred cCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC----CeEEEEEccCchhhhheeeeeeecc
Q 040987 205 KEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ----RKLLIWKVPDVEAERVVMRKITLHH 280 (762)
Q Consensus 205 ~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~ 280 (762)
.+........|+|||+.|+...+ ..|.+.|+.+++.. ++...
T Consensus 274 ----------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-----rlt~~- 319 (419)
T PRK04043 274 ----------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-----QVVFH- 319 (419)
T ss_pred ----------------------------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-----eCccC-
Confidence 11111223479999999985543 27888899887753 22221
Q ss_pred CcCeEEEEEcCCCcEEEEeecC---------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVT---------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW 351 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~d---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (762)
.. ....|+|||++|+..... ..|.+.|+.++... .+..
T Consensus 320 g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-------------------------------~LT~ 366 (419)
T PRK04043 320 GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-------------------------------RLTA 366 (419)
T ss_pred CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-------------------------------ECCC
Confidence 11 124899999998876543 25777777665321 2221
Q ss_pred cccceeEEEEecCCCEEEEEecC---CeEEEEecCCCceeccCCCCCCe
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPL 397 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v 397 (762)
. .......|+|||+.|+....+ ..+.+.+++......++...+.+
T Consensus 367 ~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 367 N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKI 414 (419)
T ss_pred C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCcc
Confidence 1 122357899999988876543 34777787765555444433333
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=5.8e-09 Score=107.99 Aligned_cols=279 Identities=13% Similarity=0.038 Sum_probs=173.6
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCCeE-EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLL-YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
+..++.++.++.+..+|..+|+..........+. .+. .++..+++++.++.+..+|..+|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS------- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-------
Confidence 5678888888999999999998865444333322 122 356778888899999999999999887654321
Q ss_pred cccCcee-eEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 444 EYKGLCR-DIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 444 ~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
.+. ...+ .+..++.++.++.++.+|..+++.+.+.......... .. ....... + ..++.+.
T Consensus 136 ----~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~----~~-~~sp~~~-~-~~v~~~~----- 197 (377)
T TIGR03300 136 ----EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL----RG-SASPVIA-D-GGVLVGF----- 197 (377)
T ss_pred ----eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee----cC-CCCCEEE-C-CEEEEEC-----
Confidence 111 1122 2446777788999999999999887765432110000 00 0111111 2 3555565
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCC-CCceEEEEEcC--CCCeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-DAGISAVAFHP--NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-~~~v~~~~~sp--d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.++.+..+|..+++..+........+.. ......+.-+| .+..++.++.+|.++.||..+++..-..
T Consensus 198 ----~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~------ 267 (377)
T TIGR03300 198 ----AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR------ 267 (377)
T ss_pred ----CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee------
Confidence 6678999999988876654311000000 00000111111 2457777888999999999988654332
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccC-ceeEEEEeCCCCEEEEEEcCCCCeEEE
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLT-PIMNMSFVGSSEYLVATSWGSKPQLSV 677 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~dg~~l~s~~~d~~~~v~v 677 (762)
. ......+. .++..+.+++ +|.++.+|..+|+.+-....... ....... .+..|++++.+|. |++
T Consensus 268 -~------~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~--l~~ 334 (377)
T TIGR03300 268 -D------ASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY--LHW 334 (377)
T ss_pred -c------cCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE--EEE
Confidence 1 01111222 2455666666 99999999999987765432111 1222222 4568999999988 999
Q ss_pred EECCCCceeeEEEEee
Q 040987 678 WNMSKLSISWSYLLHV 693 (762)
Q Consensus 678 wd~~~~~~~~~~~~~~ 693 (762)
+|..+|++++++..+.
T Consensus 335 ~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 335 LSREDGSFVARLKTDG 350 (377)
T ss_pred EECCCCCEEEEEEcCC
Confidence 9999999999888765
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.24 E-value=3.9e-08 Score=89.41 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=150.0
Q ss_pred EEeCCCCCeEEEEecCCcEEEEEcCC--ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC
Q 040987 400 FTESPDPSLSSISCADNQVHLLKMPS--MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 400 ~~~s~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 477 (762)
++.+.||+.||+. .|..|.|-..+. ...+...+..+.+. -.-..++||||+..||.+...|+|++||+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~-------PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN-------PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC-------chheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 5678899988876 677777766554 23333333333221 3447899999999999999999999999975
Q ss_pred CCceeeEEeecccccCCCCcceeEEEEEEecCC------CeEEEEeeeccccCCCceeEEEEEEecC--CCceeEEEEEe
Q 040987 478 DRGISEVQVCERNHQPGDDVTVVVTLVALSQDG------SLMSTVDIKLAEEGIGSLVCLKFWVSGT--QNKEFTLSTIV 549 (762)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g------~~l~~~~~~~~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~ 549 (762)
. .+..+.... ....+....|..+.|-+-. ..|.+.. .+|.++-|-+.. .+.-.......
T Consensus 75 ~-~lf~I~p~~---~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~---------Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 75 S-ELFVIPPAM---SFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN---------YRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred c-eeEEcCccc---ccCCccccceeeeEeeccccccccceeEEEEe---------ccceeeeEEEEcccCCcceeeEEEE
Confidence 3 333333211 1112235667777775532 1233333 567777777643 33333333444
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEE---cCCCcEEEEE
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF---SADGSVLAVA 626 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~dg~~la~~ 626 (762)
+..|....|+++.++|..++|+.|+.... +.+.. .+....+++-.. +|..+.+...
T Consensus 142 f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s---------------~a~~~GLtaWRiL~~~Pyyk~v~~~ 200 (282)
T PF15492_consen 142 FSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMS---------------KASSCGLTAWRILSDSPYYKQVTSS 200 (282)
T ss_pred ecccCCCceeEEEEcCCCCEEEEeccCCC------CCccc---------------cccccCceEEEEcCCCCcEEEcccc
Confidence 45555779999999999998887764322 00000 001222332222 2222222222
Q ss_pred cC------CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 627 AE------TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 627 ~d------~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
.| .+-.+|.+-+.+.........+.|..|..||||+.||+...+|. |.+|++.+.++........
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~--lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 201 EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS--LSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe--EEEEecCcchhhcccchhh
Confidence 12 12345555544333322334566999999999999999999998 9999999988776655543
No 277
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=4.8e-09 Score=104.16 Aligned_cols=189 Identities=17% Similarity=0.194 Sum_probs=148.0
Q ss_pred cCCCEEEEEecCCeEEEEecCCCceecc----CCCCCCeEEEEe------C--------------CCCCeEEEEecCCcE
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKKKFL----PRIGSPLLYFTE------S--------------PDPSLSSISCADNQV 418 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~v~~~~~------s--------------~~~~~l~~~~~d~~i 418 (762)
|...++|....||.+++||..+++.... ....+...+..| + -|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4457899999999999999998887421 122233333333 2 234567778889999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
.+|+...++....+.... |.+.|.++.++.+-..|.+++.|+.+..|+......+...... .
T Consensus 83 ~~ys~~~g~it~~~st~~--------h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----------~ 144 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDK--------HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ----------K 144 (541)
T ss_pred EEEEecCCeEEEEEecCC--------CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC----------C
Confidence 999999999998887543 4488999999999999999999999999999988777666543 4
Q ss_pred eeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-----CCeEEEE
Q 040987 499 VVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-----RRAAVSS 573 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-----~~~l~~~ 573 (762)
..+.+++.+|||+.+++++ ++|++||+++.+....+ .|| .+.|+++.|--+ |.++.++
T Consensus 145 ~~~~sl~is~D~~~l~~as-----------~~ik~~~~~~kevv~~f-----tgh-~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS-----------RQIKVLDIETKEVVITF-----TGH-GSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred CccceEEEcCCCCEEEecc-----------ceEEEEEccCceEEEEe-----cCC-CcceEEEEEEEeccccccceeeec
Confidence 5588999999999999998 69999999999887766 789 999999999876 6666554
Q ss_pred -eCCCcEEEEEccc
Q 040987 574 -SYGGDFKVWICND 586 (762)
Q Consensus 574 -~~dg~i~iwd~~~ 586 (762)
..+.-+.+|-...
T Consensus 208 a~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 208 AAAERGITVWVVEK 221 (541)
T ss_pred cccccceeEEEEEc
Confidence 3445577787654
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=9.2e-09 Score=92.93 Aligned_cols=273 Identities=15% Similarity=0.152 Sum_probs=171.0
Q ss_pred ccccEEEEecCCccccc--eeeeccCCCceEEEECC---CCCE-EE-EEeCCeEEEEEccCchhhhheeeeeeecc---C
Q 040987 212 MNGRICKCNLTESRLAG--GVTLAEMKEPQVITISS---SGKY-FG-IRKQRKLLIWKVPDVEAERVVMRKITLHH---T 281 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~sp---dg~~-la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~ 281 (762)
..|.+.+|++...+... .........+..+.|.- +|.+ ++ +-..|.|.++.....+.. ....-+... .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss--~~L~~ls~~ki~~ 121 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS--VHLRGLSSKKISV 121 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee--eeecccchhhhhh
Confidence 45788888887766652 22333445555566542 4442 23 346788888876654432 000111111 1
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....++.|++.+..++++..+|.+.+-+...... +.++.++.|.-+++...|
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l----------------------------e~vq~wk~He~E~Wta~f 173 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGVYETEMVL----------------------------EKVQTWKVHEFEAWTAKF 173 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEEecceeee----------------------------eecccccccceeeeeeec
Confidence 1245778999999999999999988555432211 224578899999999999
Q ss_pred ec-CCCEEEEEecCCeEEEEecCCCc-ee--ccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCC-ceEEEEEccC
Q 040987 362 SS-DGAYLYSGGKEGVLVVWQLDTGK-KK--FLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPS-MEIIRSISGI 435 (762)
Q Consensus 362 s~-~g~~l~s~~~dg~i~~wd~~~~~-~~--~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~ 435 (762)
+. +.+.+++|+.|+.+..||++... .+ ....|...|.++.-+| .+.++++|+.|..|++||.++ ++++..-..
T Consensus 174 ~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v- 252 (339)
T KOG0280|consen 174 SDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV- 252 (339)
T ss_pred ccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-
Confidence 75 34688999999999999999333 22 3456777899988776 678999999999999999986 454433221
Q ss_pred CCCCCCCCcccCceeeEEEeCC--CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHD--GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
.+.|..+..+|. ++.|+++-.+| .++.+...+... +...... ...|..-...-.|......|
T Consensus 253 ----------~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e--~~~~~~s---~~~hdSl~YG~DWd~~~~~l 316 (339)
T KOG0280|consen 253 ----------GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE--FQIVLPS---DKIHDSLCYGGDWDSKDSFL 316 (339)
T ss_pred ----------ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc--hheeeec---cccccceeecccccccccee
Confidence 178999999994 33455555555 677777654332 1111111 11123444555554445678
Q ss_pred EEEeeeccccCCCceeEEE-EEEecCC
Q 040987 514 STVDIKLAEEGIGSLVCLK-FWVSGTQ 539 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~-iwd~~~~ 539 (762)
|+++. .|+.++ +|-..++
T Consensus 317 ATCsF--------YDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 317 ATCSF--------YDKKIRQLWLHITG 335 (339)
T ss_pred eeeec--------cccceeeeeeeccC
Confidence 88764 566644 6765544
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=3e-08 Score=88.39 Aligned_cols=240 Identities=13% Similarity=-0.013 Sum_probs=159.3
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceee
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 483 (762)
...+|+.|+..|...+|...+.+.... ...+...+ ..+...+-+ ...+..++.|.+++++++..+..-..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v-------~~~~r~cd~--~~~~~i~sndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDV-------TLVKRYCDL--KFPLNIASNDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccch-------hhhhhhccc--ccceeeccCCcceeEEEEecCcccce
Confidence 345788888999999999986543322 22222111 011112211 22356677888888888765543222
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
.... .-.+.++++++|++++++.+ ....|..|.++.......- . ...+. ...-.+..|
T Consensus 154 ~h~~----------~~~~ns~~~snd~~~~~~Vg---------ds~~Vf~y~id~~sey~~~-~-~~a~t-~D~gF~~S~ 211 (344)
T KOG4532|consen 154 VHNQ----------NLTQNSLHYSNDPSWGSSVG---------DSRRVFRYAIDDESEYIEN-I-YEAPT-SDHGFYNSF 211 (344)
T ss_pred eecc----------ccceeeeEEcCCCceEEEec---------CCCcceEEEeCCccceeee-e-Eeccc-CCCceeeee
Confidence 2111 12378899999999999998 7788999998765432211 1 11233 455678899
Q ss_pred cCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc--EEEEEc-CCeEEEEeCCCCe
Q 040987 564 HPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS--VLAVAA-ETVITLWDPDRNV 640 (762)
Q Consensus 564 spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~--~la~~~-d~~i~iwd~~~~~ 640 (762)
+.....+|++..||++.|||++.-....... ......|.+.+..+.|++-|. +|.... -+.+.+.|+.+++
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEI------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhh------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 9999999999999999999998765544332 112335899999999998664 455554 7899999999986
Q ss_pred EEEEec-------cccC-ceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 641 LVAVIG-------ETLT-PIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 641 ~~~~l~-------~~~~-~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
..+.+. .|.. .|..-.|+.++..+.+.+.+. +.-|++.+..
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~---~ae~ni~srs 334 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ---GAEYNILSRS 334 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccchh---hheeeccccc
Confidence 544432 1222 388888999888888888776 7778776643
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.12 E-value=4.3e-08 Score=89.15 Aligned_cols=236 Identities=16% Similarity=0.162 Sum_probs=139.6
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccc--eEEeee---cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTG--LQISSL---EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~--~~~~~l---~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
++.+.||++||...|..|.|-..++. .++.+. +.....-.-++||||+ .+||.+...|+|+++|+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-------tlLa~a~S~G~i~vfdl~g- 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-------TLLAYAESTGTIRVFDLMG- 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-------cEEEEEcCCCeEEEEeccc-
Confidence 67899999999999999999987653 233332 3344567889999999 6888999999999999875
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
..+..+.... + + ...
T Consensus 75 ~~lf~I~p~~---~--~------------------------------------------------------------~~d 89 (282)
T PF15492_consen 75 SELFVIPPAM---S--F------------------------------------------------------------PGD 89 (282)
T ss_pred ceeEEcCccc---c--c------------------------------------------------------------CCc
Confidence 4343433210 0 0 000
Q ss_pred cCCCceEEEECCC-------CCEEEEEeCCeEEEEEccCch---hhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC-
Q 040987 234 EMKEPQVITISSS-------GKYFGIRKQRKLLIWKVPDVE---AERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT- 302 (762)
Q Consensus 234 ~~~~v~~~~~spd-------g~~la~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d- 302 (762)
-...|..+.|.+- -++|+....|.++-|-+..+. ....-...+...+...|.++.|+|..+.|++|+..
T Consensus 90 ~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 90 LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 0122233333221 245667777777777764322 11111122233457799999999999988877541
Q ss_pred ----------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 303 ----------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 303 ----------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
--+..|.+-.+.++...-... ...+.....+..+................+.|..|..||||+.|++..
T Consensus 170 ~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 170 NQDGMSKASSCGLTAWRILSDSPYYKQVTSS-EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred CCCccccccccCceEEEEcCCCCcEEEcccc-CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 136778776654432110000 000000000001111011111111123467899999999999999999
Q ss_pred cCCeEEEEecCCCcee
Q 040987 373 KEGVLVVWQLDTGKKK 388 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~ 388 (762)
.+|.|.+|++-+-+.+
T Consensus 249 ~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 249 FSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCeEEEEecCcchhh
Confidence 9999999999876553
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=9e-08 Score=109.83 Aligned_cols=274 Identities=11% Similarity=0.035 Sum_probs=163.6
Q ss_pred eEEEEecC-CCEEEEEecCCeEEEEecCCCceeccCCC--------------CCCeEEEEeCCCCCeEEEEec-CCcEEE
Q 040987 357 SVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKKFLPRI--------------GSPLLYFTESPDPSLSSISCA-DNQVHL 420 (762)
Q Consensus 357 ~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~-d~~i~i 420 (762)
..++++++ ++.+++-...+.|+++|............ -.....++++++++.|+++.. .+.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 45788875 55566666678899999865433222210 123577899998887777654 467999
Q ss_pred EEcCCceEEEEEccCCCCC-CCCC------cccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeec----
Q 040987 421 LKMPSMEIIRSISGIKLPC-PLPE------EYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCE---- 488 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~-~~~~------~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 488 (762)
+|..++. +.++.+..... .... ..-.....++++| ++..+++.+.++.|++||..++... .+....
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 9988754 33332210000 0000 0002346799999 5666667678889999998776432 111100
Q ss_pred -ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE--------Eeec--------
Q 040987 489 -RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST--------IVYE-------- 551 (762)
Q Consensus 489 -~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~-------- 551 (762)
.+.......-.....++++|+++.|.++.. .++.|++||+.++........ ..+.
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs--------~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADS--------ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEEC--------CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 000000001234677999999997766653 678999999987653211100 0000
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccC--CceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQS--SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E 628 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d 628 (762)
.. ...-..++++++|+++++-+.++.|++||..++........ ..+.--......-.....++++++|+++++-+ +
T Consensus 801 ~~-l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 801 VL-LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred hh-ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 00 11235889999999888888899999999987655432210 00000000111224577899999999777666 8
Q ss_pred CeEEEEeCCCCeE
Q 040987 629 TVITLWDPDRNVL 641 (762)
Q Consensus 629 ~~i~iwd~~~~~~ 641 (762)
+.|++||+.+++.
T Consensus 880 n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 SLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCCCcc
Confidence 9999999998764
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=5.2e-09 Score=95.02 Aligned_cols=276 Identities=12% Similarity=0.188 Sum_probs=178.0
Q ss_pred CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce-----EEEEEccCCCCCCCCCc--ccCceeeEEEeCCCC--EEEE
Q 040987 393 IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME-----IIRSISGIKLPCPLPEE--YKGLCRDIAFNHDGG--LVAL 463 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~--~l~~ 463 (762)
....|+++.|...|.++++|...|.|.+|.-.... -...+++|..+..+... ....|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568999999999999999889999999866422 22345666543321111 123566777766543 5666
Q ss_pred eecCceEEEEEcCCCCc--eee------EEeecc---------------cc------c----CCCCcceeEEEEEEecCC
Q 040987 464 RAENYCIHFYSLLDDRG--ISE------VQVCER---------------NH------Q----PGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 464 ~~~dg~i~i~d~~~~~~--~~~------~~~~~~---------------~~------~----~~~~~~~~v~~~~~sp~g 510 (762)
.+.|.+|++|.+..... +.+ +....+ .| . -...|...+.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78999999998865310 000 000000 00 0 012357778999999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC----CCceEEEEEcCC-CCeEEEEeCCCcEEEEEcc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR----DAGISAVAFHPN-RRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~----~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~ 585 (762)
..++++ .+-.|.+|+++-....+.+.. ..+|. ..-|++..|+|. ...+...+..|.|++-|++
T Consensus 185 et~lSa----------DdLrINLWnl~i~D~sFnIVD--iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 185 ETLLSA----------DDLRINLWNLEIIDGSFNIVD--IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred heeeec----------cceeeeeccccccCCceEEEe--ccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 999988 567899999986655444432 24552 235788999995 4566677788999999998
Q ss_pred cccccccc----c-CCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCC-eEEEEecccc----------
Q 040987 586 DELQQKDL----Q-SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRN-VLVAVIGETL---------- 649 (762)
Q Consensus 586 ~~~~~~~~----~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~-~~~~~l~~~~---------- 649 (762)
....-... + .....-+.....-...|..+.|+++|+++++-+--+|+|||+... .++.++.-|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhh
Confidence 43321110 0 000000011122346788999999999999988889999999754 4666664442
Q ss_pred --Cce---eEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 650 --TPI---MNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 650 --~~v---~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.| ..+.||.|.+.+.+|+.... .-+|-+.+
T Consensus 333 EnDaifdkFeisfSgd~~~v~sgsy~NN--fgiyp~~s 368 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKHVLSGSYSNN--FGIYPTDS 368 (460)
T ss_pred hccceeeeEEEEecCCcccccccccccc--eeeecccc
Confidence 122 34789999999999998876 77776443
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=9.4e-08 Score=109.68 Aligned_cols=281 Identities=11% Similarity=0.080 Sum_probs=161.9
Q ss_pred EEEEeCCC-CCeEEEEecCCcEEEEEcCCceEEEEEccC-CCCC---CCCCcccCceeeEEEeCCCCEEEEee-cCceEE
Q 040987 398 LYFTESPD-PSLSSISCADNQVHLLKMPSMEIIRSISGI-KLPC---PLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIH 471 (762)
Q Consensus 398 ~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 471 (762)
..++++++ +..+++-..++.|.++|.. +..+..+.+. .... ......-.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35778775 4455555567889999986 4444443321 1000 00011113457899999888665554 457899
Q ss_pred EEEcCCCCceeeEEeec-ccc--cCC----CCcceeEEEEEEecC-CCeEEEEeeeccccCCCceeEEEEEEecCCCcee
Q 040987 472 FYSLLDDRGISEVQVCE-RNH--QPG----DDVTVVVTLVALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~-~~~--~~~----~~~~~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
.+|..++. +..+.... .+. ... ...-.....++++|+ +..+++.. .++.|++||..++....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~---------~~~~I~v~d~~~g~v~~ 719 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA---------GQHQIWEYNISDGVTRV 719 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC---------CCCeEEEEECCCCeEEE
Confidence 99987653 22222110 000 000 000123468999995 44445544 67899999987764321
Q ss_pred EEEEE----eecCC-----CCCceEEEEEcCCCCeE-EEEeCCCcEEEEEccccccccccc-CCce--eeeeec------
Q 040987 544 TLSTI----VYEPH-----RDAGISAVAFHPNRRAA-VSSSYGGDFKVWICNDELQQKDLQ-SSGW--SCHAVG------ 604 (762)
Q Consensus 544 ~~~~~----~~~~h-----~~~~v~~~~~spd~~~l-~~~~~dg~i~iwd~~~~~~~~~~~-~~~~--~~~~~~------ 604 (762)
+... ...++ .......++++|+++.| ++-+.++.|++||+.++....... .... ......
T Consensus 720 -~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 720 -FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred -EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 1100 00000 01235679999999854 455567899999998754321100 0000 000000
Q ss_pred -ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec-------------cccCceeEEEEeCCCCEEEEEEc
Q 040987 605 -SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG-------------ETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 605 -~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~-------------~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
...-.....++++++|+++++-. +++|++||..++....... +.......++++++|+.+++-+.
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 00112346899999998766666 8999999999886654321 11124678999999998877777
Q ss_pred CCCCeEEEEECCCCceeeEEEEe
Q 040987 670 GSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 670 d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
++. |++||+.+++....+...
T Consensus 879 Nn~--Irvid~~~~~~~~~~~l~ 899 (1057)
T PLN02919 879 NSL--IRYLDLNKGEAAEILTLE 899 (1057)
T ss_pred CCE--EEEEECCCCccceeEeec
Confidence 776 999999998764434333
No 284
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.06 E-value=5e-08 Score=88.27 Aligned_cols=272 Identities=13% Similarity=0.077 Sum_probs=168.6
Q ss_pred CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC---CCc-EEEEeecCCeEEEEeccCCceeeccccccccccccc
Q 040987 255 QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP---TQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNN 330 (762)
Q Consensus 255 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 330 (762)
.|.+.+|++...+..+ ...+.......+..+.|.. +|. .++-+..+|.|.++........-
T Consensus 45 ~Gkl~Lys~~d~~~~~--l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~------------- 109 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP--LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV------------- 109 (339)
T ss_pred ccceEEEeecccccCc--cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee-------------
Confidence 4678888888777652 2233334455677777764 444 55667778999999864432111
Q ss_pred ccCCCCcccCCccccceeeecc---ccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCC
Q 040987 331 EEERPGVRDNDDADLCTTWHWH---PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESP 404 (762)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~ 404 (762)
.+..+..- .....++.|++.+..++++..+|.+.+-+...... +....|.-++....|+.
T Consensus 110 --------------~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~ 175 (339)
T KOG0280|consen 110 --------------HLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSD 175 (339)
T ss_pred --------------eecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeeccc
Confidence 00111111 11245678888888899998889988655544443 24567777888888865
Q ss_pred -CCCeEEEEecCCcEEEEEcCC-ceEEEE-EccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCC-CC
Q 040987 405 -DPSLSSISCADNQVHLLKMPS-MEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLD-DR 479 (762)
Q Consensus 405 -~~~~l~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~-~~ 479 (762)
+.+.+++|+.|+.+.-||++. ++.+.. .+.|. ..|.++.-+| .+.++++|+.|..|++||.++ ++
T Consensus 176 ~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~----------~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 176 KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT----------SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred CCCceEEecCCCceEEEEEecCCcceeeecceeee----------cceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 447889999999999999983 333322 22233 6777777776 577999999999999999984 34
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCC--eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCc
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGS--LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAG 557 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~ 557 (762)
++..... .+.|..+..+|.-. .|+++- -+-.+|-+.+...............| .+-
T Consensus 246 Pl~~~~v-----------~GGVWRi~~~p~~~~~lL~~CM----------h~G~ki~~~~~~~~e~~~~~~s~~~h-dSl 303 (339)
T KOG0280|consen 246 PLFKAKV-----------GGGVWRIKHHPEIFHRLLAACM----------HNGAKILDSSDKVLEFQIVLPSDKIH-DSL 303 (339)
T ss_pred ccccCcc-----------ccceEEEEecchhhhHHHHHHH----------hcCceEEEecccccchheeeeccccc-cce
Confidence 3333222 56799999998543 333332 13456666655444333333334556 444
Q ss_pred eEEEEEcCCCCeEEEEe-CCCcEE-EEEcccc
Q 040987 558 ISAVAFHPNRRAAVSSS-YGGDFK-VWICNDE 587 (762)
Q Consensus 558 v~~~~~spd~~~l~~~~-~dg~i~-iwd~~~~ 587 (762)
...-.|......||+++ .|+.++ +|-.-++
T Consensus 304 ~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 304 CYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeccccccccceeeeeeccccceeeeeeeccC
Confidence 44455543345688765 466644 6755443
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=1.9e-08 Score=91.41 Aligned_cols=302 Identities=14% Similarity=0.146 Sum_probs=174.4
Q ss_pred cccccCCceeecCCCEEEEEe-CCEEEEEEcccce-----EEeeecCCc------------cceeEEEEeCCCCccccee
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-----QISSLEGHK------------APVTTVIVVPASTPATKIL 133 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-----~~~~l~~h~------------~~V~~v~~s~~~~~~~~l~ 133 (762)
.+.|+ ++.|...|.|||+|. +|.|.++.-+... ....+++|. ..|..+.|..+++ .
T Consensus 26 ad~It-aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~----r- 99 (460)
T COG5170 26 ADKIT-AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG----R- 99 (460)
T ss_pred cceee-EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC----c-
Confidence 34566 499999999999999 6999999865432 234466664 4588899988773 2
Q ss_pred eeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcc
Q 040987 134 SYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMN 213 (762)
Q Consensus 134 ~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 213 (762)
..+.-.+.|.+|++|.+......-.-+ ..-..++.+|. ......++.+.. |-..--|
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~-nnls~~~~~~~------~g~~~s~~~l~l----------------prls~hd 156 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAE-NNLSDSFHSPM------GGPLTSTKELLL----------------PRLSEHD 156 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhc-ccccccccccc------CCCcCCHHHhhc----------------ccccccc
Confidence 233456679999999987653211111 00000000000 000000000000 0000001
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee----eeccCcCeEEEEE
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI----TLHHTKKLTVLAF 289 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~~~~~ 289 (762)
..|.. +..+.....|.-.+.++.|..|.+.+.++.+-.|.+|++.-..... .+..+ ...-..-|++..|
T Consensus 157 ~iiaa------~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeF 229 (460)
T COG5170 157 EIIAA------KPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEF 229 (460)
T ss_pred eEEEe------ccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCce-EEEeccCccHHHHHHHHhhccc
Confidence 11111 0111233457888999999999999999999999999987443210 00000 1112345788999
Q ss_pred cCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEE
Q 040987 290 HPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYL 368 (762)
Q Consensus 290 sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 368 (762)
+|.. ..+...+..|.|++-|++.......... ......++....-+.+-...|..+.|+++|+++
T Consensus 230 hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k--------------lfe~~~D~v~~~ff~eivsSISD~kFs~ngryI 295 (460)
T COG5170 230 HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK--------------LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYI 295 (460)
T ss_pred CHhHcceEEEecCCCcEEehhhhhhhhccCchh--------------hhhhccCcccchhHHHHhhhhcceEEcCCCcEE
Confidence 9954 4566777899999999863321100000 000001112223344455678899999999999
Q ss_pred EEEecCCeEEEEecCCCce-e-ccCCC------------CCCe---EEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 369 YSGGKEGVLVVWQLDTGKK-K-FLPRI------------GSPL---LYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 369 ~s~~~dg~i~~wd~~~~~~-~-~~~~~------------~~~v---~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
++-+. -++++||+...+. + ..+-| ...| ..+.||.|.+.+++|+..+..-+|-..
T Consensus 296 lsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 296 LSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 87655 6899999876543 1 11111 1222 357889999999999988888887644
No 286
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.05 E-value=2.5e-07 Score=87.31 Aligned_cols=247 Identities=11% Similarity=0.070 Sum_probs=157.2
Q ss_pred eeEEEEec-CCCEEEEEecCCe-EEEEecCCCceeccC-CCCCC--eEEEEeCCCCCeEEEEec-----CCcEEEEEcC-
Q 040987 356 VSVLIFSS-DGAYLYSGGKEGV-LVVWQLDTGKKKFLP-RIGSP--LLYFTESPDPSLSSISCA-----DNQVHLLKMP- 424 (762)
Q Consensus 356 v~~~~~s~-~g~~l~s~~~dg~-i~~wd~~~~~~~~~~-~~~~~--v~~~~~s~~~~~l~~~~~-----d~~i~i~d~~- 424 (762)
...++.+| ++..++.+-.-|+ ..+||..+++..... ...+. --.-+||+||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34577888 4556666666654 788999998875322 22222 224689999999998744 4679999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec------------------CceEEEEEcCCCCceeeEEe
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE------------------NYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~ 486 (762)
+.+.+.++..+- -....+.+.|||+.|+++.. +-.+.+.|..+++.+.+...
T Consensus 87 ~~~ri~E~~s~G----------IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 87 GYRRIGEFPSHG----------IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred CcEEEeEecCCC----------cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 677777777655 23467889999988877631 12455667777776665444
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
.... +...+..+++.++|..++......+... .---+-+++....-............- .+.+-+|+++++
T Consensus 157 p~~~------~~lSiRHLa~~~~G~V~~a~Q~qg~~~~--~~PLva~~~~g~~~~~~~~p~~~~~~l-~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 157 PPDL------HQLSIRHLAVDGDGTVAFAMQYQGDPGD--APPLVALHRRGGALRLLPAPEEQWRRL-NGYIGSIAADRD 227 (305)
T ss_pred Cccc------cccceeeEEecCCCcEEEEEecCCCCCc--cCCeEEEEcCCCcceeccCChHHHHhh-CCceEEEEEeCC
Confidence 3222 2678999999999987776653211110 112333443332211111110001112 468999999999
Q ss_pred CCeEEEEe-CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 567 RRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 567 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
+.++++.+ ..+.+.+||..++..+.... -..+..++-.+++ ++++.+.|.+...+
T Consensus 228 g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-------------l~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAATGRLLGSVP-------------LPDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred CCEEEEECCCCCEEEEEECCCCCEeeccc-------------cCceeeeeecCCc-eEEeCCCccEEEcc
Confidence 98876655 56789999999998877653 4567777877777 66666666644443
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=9.9e-10 Score=107.27 Aligned_cols=294 Identities=16% Similarity=0.147 Sum_probs=185.3
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|...|..++--.+.+.+++++.|.+|++|.++.... ......+..+++.|..
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-----------------------~~~tsaCQfTY~aHkk 785 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-----------------------EIGTSACQFTYQAHKK 785 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-----------------------ccccceeeeEhhhccC
Confidence 45668999999998777888899999999999999854310 0011235577889999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceec----cCCCC--CCeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF----LPRIG--SPLLYFTESPDPSLSSIS-CADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~--~~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~ 427 (762)
+|.++.|-.+-++++++ ||.|.+||.--++... .+.++ +.|.++. +-+...+..+ +...+++++|.+..+
T Consensus 786 ~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 786 PIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred cccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeeccccc
Confidence 99999999998888765 6889999987777632 12222 2333332 2344555555 568899999999887
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
....++....+. .+..+.+++..+.|++++.+-.+|+|.+.|.++++.+....... .....++ .
T Consensus 863 ~~~E~kVcna~~-----Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-a 926 (1034)
T KOG4190|consen 863 WTCELKVCNAPG-----PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-A 926 (1034)
T ss_pred ceeeEEeccCCC-----CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-C
Confidence 766655432111 12678899999999999999999999999999998766544321 1122222 2
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEE-EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKF-WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
|..+.++... .|.++.+ |....+....+.+......| -. -.-|..|++......+.+|.-..
T Consensus 927 psdq~L~~sa---------ldHslaVnWhaldgimh~q~kpppepah---fl-----qsvgpSLV~a~~Gn~lgVYad~a 989 (1034)
T KOG4190|consen 927 PSDQALAQSA---------LDHSLAVNWHALDGIMHLQDKPPPEPAH---FL-----QSVGPSLVTAQNGNILGVYADSA 989 (1034)
T ss_pred chhHHHHhhc---------ccceeEeeehhcCCeeeeccCCCCcchh---hh-----hccCceeEEeccCcEEEEEecch
Confidence 4455666555 6778888 87776655544432211222 11 11255677766666677774221
Q ss_pred cccc-ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEE
Q 040987 587 ELQQ-KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITL 633 (762)
Q Consensus 587 ~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~i 633 (762)
.... ..+. . .....-.+..++++--|=..-+..|+ .|.|.+
T Consensus 990 ~~ha~stit--K----iR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 990 ELHAESTIT--K----IRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhhhhc--c----ccccccCCccceeeeccccchhhccCCCCceee
Confidence 1100 0000 0 00112245667777777665555565 677765
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=1.2e-06 Score=84.66 Aligned_cols=228 Identities=15% Similarity=0.079 Sum_probs=142.6
Q ss_pred EEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeC-CCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 358 VLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTES-PDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 358 ~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
+++|.+ ++.++++--..+.|..|+..+++........ ...+++. +++.+ +++.. +.+.++|..+++........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l-~v~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRL-YVADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEE-EEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEE-EEEEc-CceEEEecCCCcEEEEeecc
Confidence 578888 5655666556799999999988765433222 6667776 66544 44434 55666699888655444431
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecC--------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN--------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
... ........+++.|+|++.++.... |.|..++.. ++ ...+... ......++|+
T Consensus 80 ~~~-----~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~----------~~~pNGi~~s 142 (246)
T PF08450_consen 80 DGG-----VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADG----------LGFPNGIAFS 142 (246)
T ss_dssp TTC-----SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEE----------ESSEEEEEEE
T ss_pred CCC-----cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecC----------cccccceEEC
Confidence 100 011577899999999977765533 567777776 33 2222211 2347899999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
||++.|..+.. ..+.|..|++..... ..............+..-.+++..+|++.++....+.|.++|.+
T Consensus 143 ~dg~~lyv~ds--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~- 213 (246)
T PF08450_consen 143 PDGKTLYVADS--------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD- 213 (246)
T ss_dssp TTSSEEEEEET--------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-
T ss_pred Ccchheeeccc--------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-
Confidence 99998876653 667899999975443 22111111111102347789999999988888788999999987
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEc-CCCcEEEEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS-ADGSVLAVA 626 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~ 626 (762)
++....+. .....+++++|. ++.+.|.+.
T Consensus 214 G~~~~~i~-----------~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 214 GKLLREIE-----------LPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SCEEEEEE------------SSSSEEEEEEESTTSSEEEEE
T ss_pred ccEEEEEc-----------CCCCCEEEEEEECCCCCEEEEE
Confidence 65554442 123588999994 676665543
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=1.5e-06 Score=83.95 Aligned_cols=236 Identities=15% Similarity=0.055 Sum_probs=144.9
Q ss_pred EEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe-CCCCEEEEeecCceEEEEEc
Q 040987 398 LYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN-HDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 398 ~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~ 475 (762)
.+++|.+ ++.++++-...+.|+.|+..++.....-. .....+++. ++++ ++++...+ +.++|.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------------~~~~G~~~~~~~g~-l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------------PGPNGMAFDRPDGR-LYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-------------SSEEEEEEECTTSE-EEEEETTC-EEEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-------------CCCceEEEEccCCE-EEEEEcCc-eEEEec
Confidence 3577887 56666665568899999998876543222 225778888 6654 45544544 566698
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCC
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRD 555 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~ 555 (762)
.+++...........+ .....+.+++.|+|++.++.......... ..+.|..++.. ++....... -
T Consensus 68 ~~g~~~~~~~~~~~~~-----~~~~~ND~~vd~~G~ly~t~~~~~~~~~~-~~g~v~~~~~~-~~~~~~~~~-------~ 133 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGV-----PFNRPNDVAVDPDGNLYVTDSGGGGASGI-DPGSVYRIDPD-GKVTVVADG-------L 133 (246)
T ss_dssp TTTEEEEEEEEETTCS-----CTEEEEEEEE-TTS-EEEEEECCBCTTCG-GSEEEEEEETT-SEEEEEEEE-------E
T ss_pred CCCcEEEEeeccCCCc-----ccCCCceEEEcCCCCEEEEecCCCccccc-cccceEEECCC-CeEEEEecC-------c
Confidence 8875443333321110 15778999999999977766522111100 11667777776 332222211 3
Q ss_pred CceEEEEEcCCCCeEE-EEeCCCcEEEEEcccccc-cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEE
Q 040987 556 AGISAVAFHPNRRAAV-SSSYGGDFKVWICNDELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVIT 632 (762)
Q Consensus 556 ~~v~~~~~spd~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~ 632 (762)
...+.++|+||++.|+ +-+..+.|..+++..... ..... .........+..-.+++..+|++.++.. .+.|.
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR-----VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE-----EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeee-----eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 3567999999998776 455677888888864332 11100 0011111223477899999998777665 89999
Q ss_pred EEeCCCCeEEEEeccccCceeEEEEe-CCCCEEEEEE
Q 040987 633 LWDPDRNVLVAVIGETLTPIMNMSFV-GSSEYLVATS 668 (762)
Q Consensus 633 iwd~~~~~~~~~l~~~~~~v~~~~~s-~dg~~l~s~~ 668 (762)
++|.+ |+.+..+......+++++|. +|.+.|+..+
T Consensus 209 ~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 99998 88888887665689999995 5666666544
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.03 E-value=3e-07 Score=86.77 Aligned_cols=247 Identities=14% Similarity=0.158 Sum_probs=158.5
Q ss_pred CCCeEEEEeCC-CCCeEEEEecCC-cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-----c
Q 040987 394 GSPLLYFTESP-DPSLSSISCADN-QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-----E 466 (762)
Q Consensus 394 ~~~v~~~~~s~-~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~ 466 (762)
+.....++.+| ++..++++-.-| ...+||..+++....+...... ...-.-+|++||++|++.- .
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--------HFyGHg~fs~dG~~LytTEnd~~~g 75 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--------HFYGHGVFSPDGRLLYTTENDYETG 75 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--------EEecCEEEcCCCCEEEEeccccCCC
Confidence 34456678888 455666666655 5789999999988877654311 1223578999999998864 3
Q ss_pred CceEEEEEcC-CCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc---C------CCceeEEEEEEe
Q 040987 467 NYCIHFYSLL-DDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE---G------IGSLVCLKFWVS 536 (762)
Q Consensus 467 dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~---~------~~~d~~i~iwd~ 536 (762)
.|.|-+||.. +.+.+.++... .-....+.+.|||+.|+++...+.-. + ..-+.++...|.
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~----------GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSH----------GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCC----------CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 4899999998 44444444332 33356788999998888875322111 0 002345666777
Q ss_pred cCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCc-------EEEEEcccccccccccCCceeeeeecccCCC
Q 040987 537 GTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGD-------FKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 537 ~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
.+++.+.+... ...-| ...|+-+++.++|..++..-..|. +.+++....-.....+...| ..-..
T Consensus 146 ~sG~ll~q~~L-p~~~~-~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~------~~l~~ 217 (305)
T PF07433_consen 146 RSGALLEQVEL-PPDLH-QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW------RRLNG 217 (305)
T ss_pred CCCceeeeeec-Ccccc-ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH------HhhCC
Confidence 77776544321 00224 778999999999877665544332 33443332211111111111 12357
Q ss_pred CeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 610 AMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 610 ~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
.+-+++++++|.++++.+ .+.+.+||..+++++....- ..+..++-.+++ +++|.+.
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCC
Confidence 889999999999998887 79999999999999877642 346777777777 5665554
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=4.7e-09 Score=106.38 Aligned_cols=298 Identities=11% Similarity=0.124 Sum_probs=194.5
Q ss_pred ccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc--EEEEeecCCeEEEEec
Q 040987 233 AEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR--IVAAGDVTGRILIWRG 310 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~v~vw~~ 310 (762)
.-.+++.++.++|.|+-+|.+....+.+.|+...-.. .+-+.....-.|-...|+|... +-++......-.+|++
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~p---pr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTP---PRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcCeEEEeccCCCCC---ceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 3467888999999999999777777888888765542 1111111122466778887543 3344444555678987
Q ss_pred cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceec
Q 040987 311 FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKF 389 (762)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~ 389 (762)
.... +...-..+.+|...|+.+.|.|.. ..+++++.|-.+..||+++...-.
T Consensus 99 A~ss---------------------------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ 151 (1081)
T KOG0309|consen 99 AKSS---------------------------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF 151 (1081)
T ss_pred hcCC---------------------------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce
Confidence 4331 112336788999999999998864 578899999999999999866522
Q ss_pred --cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEee
Q 040987 390 --LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRA 465 (762)
Q Consensus 390 --~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~ 465 (762)
...-......+.|+.....+.+.+..+.|.+||.+. +.++..+++|. ..+..++|..- ...+.+.+
T Consensus 152 ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v----------s~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 152 YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV----------SSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred eeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc----------eeeehHHHhhhhhhhhcccC
Confidence 222344567788987665666667888999999987 45677777765 66777777652 33577888
Q ss_pred cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--
Q 040987 466 ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF-- 543 (762)
Q Consensus 466 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-- 543 (762)
.|++|++||.............. ..++..-.+.|=|+-..+.-+. ++..+.+++.+.....+
T Consensus 222 ~d~tvkfw~y~kSt~e~~~~vtt---------~~piw~~r~~Pfg~g~~~mp~~-------G~n~v~~~~c~n~d~e~n~ 285 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESKRTVTT---------NFPIWRGRYLPFGEGYCIMPMV-------GGNMVPQLRCENSDLEWNV 285 (1081)
T ss_pred CCCceeeecccccccccceeccc---------cCcceeccccccCceeEecccc-------CCeeeeeccccchhhhhcc
Confidence 99999999987654332221111 3456666666655433332211 34455555554332211
Q ss_pred ---EEEEEeecCCCCCceEEEEEcCCCC----------eEEEEeCCCcEEEEEcccc
Q 040987 544 ---TLSTIVYEPHRDAGISAVAFHPNRR----------AAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 544 ---~~~~~~~~~h~~~~v~~~~~spd~~----------~l~~~~~dg~i~iwd~~~~ 587 (762)
......+.|| ...|....|-..+. .|++-+.|.++++|-+.+.
T Consensus 286 ~~~~~pVh~F~GH-~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 286 FDLNTPVHTFVGH-DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccCCcceeeecCc-chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 1111235788 88887777754322 5999999999999988653
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.99 E-value=6.6e-07 Score=92.99 Aligned_cols=269 Identities=10% Similarity=0.045 Sum_probs=159.5
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
+..++.++.++.++.+|.++|+..........+.+ ... .+..++++..++.+..+|..+|+.+............
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~-- 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL-- 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc--
Confidence 45677788889999999999998655444443322 111 2446667778999999999999998887643210000
Q ss_pred cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec--CCCeEEEEeeecc
Q 040987 444 EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVDIKLA 521 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~ 521 (762)
....+.... +..++.++.+|.+..+|..+++...+........... ......+..+| .+..+..++
T Consensus 196 ---~~~~sP~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~---~~~~~~~~~sP~v~~~~vy~~~---- 263 (394)
T PRK11138 196 ---RGESAPATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE---IDRLVDVDTTPVVVGGVVYALA---- 263 (394)
T ss_pred ---cCCCCCEEE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc---hhcccccCCCcEEECCEEEEEE----
Confidence 000111222 2357777888999999999988766543211100000 00011111122 234555555
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeee
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCH 601 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 601 (762)
.++.+..+|..+++..+.... + ....+.. ++..++.++.+|.+..+|..+++.+-..+
T Consensus 264 -----~~g~l~ald~~tG~~~W~~~~----~----~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~------- 321 (394)
T PRK11138 264 -----YNGNLVALDLRSGQIVWKREY----G----SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQS------- 321 (394)
T ss_pred -----cCCeEEEEECCCCCEEEeecC----C----CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccc-------
Confidence 678999999999987765431 1 1112222 45677778889999999998886543221
Q ss_pred eecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeE-EEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 602 AVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMN-MSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 602 ~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~-~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.. ......+... -++ .|.+++ ||.+++.|..+|+.+...+-....+.+ ..+ .+..|+.++.||. |+.++
T Consensus 322 ~~---~~~~~~sp~v-~~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~--l~~~~ 392 (394)
T PRK11138 322 DL---LHRLLTAPVL-YNG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGT--VYAIT 392 (394)
T ss_pred cc---CCCcccCCEE-ECC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCce--EEEEe
Confidence 00 0111122222 144 555565 999999999999988776543333332 222 2447888899987 87765
Q ss_pred C
Q 040987 680 M 680 (762)
Q Consensus 680 ~ 680 (762)
.
T Consensus 393 ~ 393 (394)
T PRK11138 393 R 393 (394)
T ss_pred C
Confidence 4
No 293
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=7.3e-09 Score=115.20 Aligned_cols=243 Identities=12% Similarity=0.122 Sum_probs=169.8
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
++...-|..+.+. +....+-..+.++.-+|...+.++|+.||.+++|.-..++.+..+..... ..++.+.
T Consensus 2189 ~~~~~tq~~~~~~-~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~---------s~vtr~~ 2258 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGAS-VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN---------SRVTRSR 2258 (2439)
T ss_pred Cccccceecccce-eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc---------chhhhhh
Confidence 3444444433222 22334445678888889889999999999999999988887777654331 5788999
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
|+.+|+....+..||.+.+|.... +..... +.| .....++.|-. ..+++++. ...++.+.+
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~----qch------nk~~~Df~Fi~--s~~~tag~------s~d~~n~~l 2319 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQASP-KPYTSW----QCH------NKALSDFRFIG--SLLATAGR------SSDNRNVCL 2319 (2439)
T ss_pred hcccCCceeeeccCCceeecccCC-cceecc----ccC------Cccccceeeee--hhhhcccc------CCCCCcccc
Confidence 999999999999999999999872 222211 222 44456666654 55566542 126789999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA 613 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 613 (762)
||.--.....-+. ..| .+.++++++-|..++|++|+.+|.|++||++..+.+..++
T Consensus 2320 wDtl~~~~~s~v~----~~H-~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~------------------- 2375 (2439)
T KOG1064|consen 2320 WDTLLPPMNSLVH----TCH-DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ------------------- 2375 (2439)
T ss_pred hhcccCcccceee----eec-CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh-------------------
Confidence 9976554443333 578 8899999999999999999999999999999888877663
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-c--cCc---eeEEEEeCCCCEEEEEEcCC
Q 040987 614 AAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-T--LTP---IMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 614 ~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~--~~~---v~~~~~s~dg~~l~s~~~d~ 671 (762)
++. ...++.+|+ .|.++||++..-.++..+.. | .+- +..-.+...+.+|.+|+.|+
T Consensus 2376 -~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2376 -ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred -hhh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCC
Confidence 133 456888888 99999999998776665532 1 110 11112223456677777776
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.95 E-value=3.4e-07 Score=95.10 Aligned_cols=303 Identities=12% Similarity=0.050 Sum_probs=172.5
Q ss_pred CCEEEEEe-CCEEEEEEcccceEEeeecCCcc----------cee-EEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 85 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHKA----------PVT-TVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 85 g~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~----------~V~-~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
+..+.++. ++.+.-+|.++|+.+-+.+-... .+. .+.. .++ .++.++.++.+.-+|.++
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~--------~v~v~~~~g~l~ald~~t 139 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGG--------KVYIGSEKGQVYALNAED 139 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECC--------EEEEEcCCCEEEEEECCC
Confidence 33444444 68999999999998866542210 010 0111 123 344677889999999999
Q ss_pred cceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee
Q 040987 153 PELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL 232 (762)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 232 (762)
|+.+-+.+...++.+... -.++ .. +.++.++.+..+|.++|+.+-....
T Consensus 140 G~~~W~~~~~~~~~ssP~--------v~~~-----~v------------------~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 140 GEVAWQTKVAGEALSRPV--------VSDG-----LV------------------LVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCCcccccCCCceecCCE--------EECC-----EE------------------EEECCCCEEEEEEccCCCEeeeecC
Confidence 998887765443221100 0011 11 3345678999999999998843332
Q ss_pred ccCC----CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec-cC-cCeEEEEEcC--CCcEEEEeecCCe
Q 040987 233 AEMK----EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH-HT-KKLTVLAFHP--TQRIVAAGDVTGR 304 (762)
Q Consensus 233 ~~~~----~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~-~~v~~~~~sp--~~~~l~~~~~dg~ 304 (762)
.... ........ ++..++...++.+..+|..+++...........+ +. .....+.-+| .+..++.++.+|.
T Consensus 189 ~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 189 DVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred CCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 2110 00111111 3445556678899999999887641110000000 00 0011111222 2446667778999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
+..+|..+++..-.. .......+. .++..++.++.++.+..+|..+
T Consensus 268 l~ald~~tG~~~W~~--------------------------------~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 268 LVALDLRSGQIVWKR--------------------------------EYGSVNDFA--VDGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred EEEEECCCCCEEEee--------------------------------cCCCccCcE--EECCEEEEEcCCCeEEEEECCC
Confidence 999999877543210 001111122 2456788888899999999999
Q ss_pred CceeccCC-CCC-CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE
Q 040987 385 GKKKFLPR-IGS-PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA 462 (762)
Q Consensus 385 ~~~~~~~~-~~~-~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 462 (762)
++.+.... ... ...+... .+..+++++.+|.+..+|..+|+.+...+-... .......+. +..|+
T Consensus 314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~---------~~~s~P~~~--~~~l~ 380 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS---------GFLSEPVVA--DDKLL 380 (394)
T ss_pred CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC---------cceeCCEEE--CCEEE
Confidence 98754222 111 1122222 256778888999999999999998877653221 111122222 44788
Q ss_pred EeecCceEEEEEc
Q 040987 463 LRAENYCIHFYSL 475 (762)
Q Consensus 463 ~~~~dg~i~i~d~ 475 (762)
+++.+|.|+.++.
T Consensus 381 v~t~~G~l~~~~~ 393 (394)
T PRK11138 381 IQARDGTVYAITR 393 (394)
T ss_pred EEeCCceEEEEeC
Confidence 8899999988764
No 295
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.95 E-value=3.1e-06 Score=80.91 Aligned_cols=285 Identities=18% Similarity=0.135 Sum_probs=169.4
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEcCCceEEEEEccCCCCCCCCCc
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKMPSMEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (762)
+.++++|.++++.+-..... -.-.+..+||++.++++. ....|.+||..+......+.-...+...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~--- 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ--- 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-----
T ss_pred ceEEEEECCCCcEEEEeecc-cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe---
Confidence 47888898888764322211 123467899999988753 2346999999998887765433210000
Q ss_pred ccCceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 445 YKGLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
.-.....++++.|++++++.. --..|.+.|+...+.+.++... +...-.- +++ +.+.+.+
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-----------GC~~iyP-~~~-~~F~~lC----- 154 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-----------GCWLIYP-SGN-RGFSMLC----- 154 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------SEEEEEE-EET-TEEEEEE-----
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------CEEEEEe-cCC-CceEEEe-----
Confidence 002335678999999887764 3467999999998887776542 1121111 222 3455555
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCce-EEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGI-SAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCH 601 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v-~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 601 (762)
+||.+.-..+..........+..+... ...+ ..-+++..+..++..+.+|.|+--|+......... .|...
T Consensus 155 ----~DGsl~~v~Ld~~Gk~~~~~t~~F~~~-~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~---~~~~~ 226 (342)
T PF06433_consen 155 ----GDGSLLTVTLDADGKEAQKSTKVFDPD-DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK---PWSLL 226 (342)
T ss_dssp ----TTSCEEEEEETSTSSEEEEEEEESSTT-TS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE---EEESS
T ss_pred ----cCCceEEEEECCCCCEeEeeccccCCC-CcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC---ccccc
Confidence 788999988884444333333344443 3332 34455666666777888999988888765432221 22211
Q ss_pred eec----ccCCCCeEEEEEcCCCcEEEEE-------c--C--CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCC-EEE
Q 040987 602 AVG----SYKKKAMTAAAFSADGSVLAVA-------A--E--TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSE-YLV 665 (762)
Q Consensus 602 ~~~----~~~~~~i~~~~~s~dg~~la~~-------~--d--~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~-~l~ 665 (762)
... .-..+.-.-+++++..+.|.+- + | ..|.++|+++++.+..+.. ..++.++..+.|.+ +|+
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEE
Confidence 000 0012344457888766555442 1 2 2588889999999999863 34688999999876 555
Q ss_pred EEE-cCCCCeEEEEECCCCceeeEEEEe
Q 040987 666 ATS-WGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 666 s~~-~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+.+ .++. |.+||..+|+++.++..-
T Consensus 306 ~~~~~~~~--l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 306 ALSAGDGT--LDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEETTTTE--EEEEETTT--EEEEE---
T ss_pred EEcCCCCe--EEEEeCcCCcEEeehhcc
Confidence 554 3565 999999999999877644
No 296
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.95 E-value=2.5e-07 Score=95.61 Aligned_cols=245 Identities=11% Similarity=0.057 Sum_probs=151.9
Q ss_pred CCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc--CCCcEEEEeecCCeEEEEeccCCceeeccc
Q 040987 245 SSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH--PTQRIVAAGDVTGRILIWRGFGDRTFATND 320 (762)
Q Consensus 245 pdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 320 (762)
-||++|..- .+..|...+++..++. ++.. ......+..++|. |+..+++.++...
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~--~i~~--iPn~~~~Hg~~~~~~p~t~yv~~~~e~~----------------- 197 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCD--KITE--LPNVQGIHGLRPQKIPRTGYVFCNGEFR----------------- 197 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeec--eeEe--CCCccCccccCccccCCccEEEeCcccc-----------------
Confidence 478888765 3577777788777754 2212 2344566667765 6777777664321
Q ss_pred ccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceeccCCCCCCeEE
Q 040987 321 NKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPRIGSPLLY 399 (762)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~v~~ 399 (762)
+=++|||+.+...+ ..+.+.+.|.++.+.......+.....
T Consensus 198 --------------------------------------~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~ 239 (635)
T PRK02888 198 --------------------------------------IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDN 239 (635)
T ss_pred --------------------------------------cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCccc
Confidence 12345555443322 235677778887666554444556677
Q ss_pred EEeCCCCCeEEEEecC----CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 400 FTESPDPSLSSISCAD----NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 400 ~~~s~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
+.++++|+++++.+.+ ..+...+.........+... ...++.++|++... .++.|.+.|.
T Consensus 240 v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--------------~iea~vkdGK~~~V--~gn~V~VID~ 303 (635)
T PRK02888 240 VDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--------------RIEEAVKAGKFKTI--GGSKVPVVDG 303 (635)
T ss_pred ceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--------------HHHHhhhCCCEEEE--CCCEEEEEEC
Confidence 8999999999888632 23333333322222222110 01134557887666 3678999999
Q ss_pred CC-----CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee-------
Q 040987 476 LD-----DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF------- 543 (762)
Q Consensus 476 ~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~------- 543 (762)
.+ ...+..+.. ......++++|||+++++++. .+.++.+.|+.+.+...
T Consensus 304 ~t~~~~~~~v~~yIPV-----------GKsPHGV~vSPDGkylyVank--------lS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 304 RKAANAGSALTRYVPV-----------PKNPHGVNTSPDGKYFIANGK--------LSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CccccCCcceEEEEEC-----------CCCccceEECCCCCEEEEeCC--------CCCcEEEEEChhhhhhhhccCCcc
Confidence 87 344444444 344678999999999999874 68899999998755311
Q ss_pred -EEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 544 -TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 544 -~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.+...+.. ...-...+|.++|+...+..-|..|..||+..
T Consensus 365 ~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11111111 12334578999999888888899999999976
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=4.1e-09 Score=103.04 Aligned_cols=288 Identities=14% Similarity=0.123 Sum_probs=172.9
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc-------cceEEeeecCCccceeEEEEeCCCCcccceeee
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS-------TGLQISSLEGHKAPVTTVIVVPASTPATKILSY 135 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~-------~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~ 135 (762)
....+.||++.|.. ++--.+.+-+++++ |++|++|.++ |..+..+++.|..+|..+.|..+- ++
T Consensus 727 rL~nf~GH~~~iRa-i~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-------r~ 798 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRA-IAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-------RS 798 (1034)
T ss_pred eeecccCcHHHhHH-HHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-------ce
Confidence 33456899999997 54444444555555 8999999985 334778899999999999999998 56
Q ss_pred EEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcccc
Q 040987 136 CWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGR 215 (762)
Q Consensus 136 l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 215 (762)
+++ -|+.|.+||.--|+.+......
T Consensus 799 i~S--cD~giHlWDPFigr~Laq~~da----------------------------------------------------- 823 (1034)
T KOG4190|consen 799 IAS--CDGGIHLWDPFIGRLLAQMEDA----------------------------------------------------- 823 (1034)
T ss_pred eee--ccCcceeecccccchhHhhhcC-----------------------------------------------------
Confidence 554 4799999998777665433210
Q ss_pred EEEEecCCccccceeeeccCCCceEEEECC--CCCEE-EE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 216 ICKCNLTESRLAGGVTLAEMKEPQVITISS--SGKYF-GI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 216 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~l-a~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
.+ .+.+..+..-| |...+ |. +...+|+++|....+...........+..+.+.+++..+
T Consensus 824 -----pk------------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 824 -----PK------------EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred -----cc------------cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 00 01111111112 23333 33 357889999988777541111122234456789999999
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG 371 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 371 (762)
.|+++|++-.+|.|.+.|.+++..+. .++...-....++ .|..+.|+..
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vIN------------------------------swrpmecdllqla-apsdq~L~~s 935 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVIN------------------------------SWRPMECDLLQLA-APSDQALAQS 935 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceec------------------------------cCCcccchhhhhc-CchhHHHHhh
Confidence 99999999999999999998885442 2222222222222 2444566766
Q ss_pred ecCCeEEE-EecCCCceeccCC-CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC----ceEEEEEccCCCCCCCCCcc
Q 040987 372 GKEGVLVV-WQLDTGKKKFLPR-IGSPLLYFTESPDPSLSSISCADNQVHLLKMPS----MEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 372 ~~dg~i~~-wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~ 445 (762)
..|.++.+ |..-.+....... .+.+..-+ ..-|..++++...+.+.+|.-.. ...+..+... ..
T Consensus 936 aldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d--------~f 1005 (1034)
T KOG4190|consen 936 ALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPD--------EF 1005 (1034)
T ss_pred cccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhcccccc--------cc
Confidence 67778887 8766555432211 11111111 11244566665555666664321 1111122211 12
Q ss_pred cCceeeEEEeCCCCEEEEeecCceEEE
Q 040987 446 KGLCRDIAFNHDGGLVALRAENYCIHF 472 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~dg~i~i 472 (762)
.+..++++.-|-+.-++.|.+.|.|.+
T Consensus 1006 ~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1006 PGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCccceeeeccccchhhccCCCCceee
Confidence 366788888887777777888887765
No 298
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.94 E-value=4.4e-06 Score=85.11 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=159.3
Q ss_pred ecCCCEEEEEe---------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 362 SSDGAYLYSGG---------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 362 s~~g~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
|||+++++... ..+.+.++|+.+++...+......+....|||+|+.++.. .++.|.+++..++...+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEec
Confidence 57887777632 2367999999999887766667788999999999999988 6789999999887555433
Q ss_pred ccCCCCC--CCCC-----cccCceeeEEEeCCCCEEEEeecC-c-----------------------------------e
Q 040987 433 SGIKLPC--PLPE-----EYKGLCRDIAFNHDGGLVALRAEN-Y-----------------------------------C 469 (762)
Q Consensus 433 ~~~~~~~--~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d-g-----------------------------------~ 469 (762)
......+ ..++ .--+.-..+-||||+++|+....| . .
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~ 159 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS 159 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE
Confidence 3221100 0000 000223678999999999876433 1 1
Q ss_pred EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 470 IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
+.++|+.+++.. .+.... . .......+..+.|.++++.|+..-. ++......+.+.|..++.........
T Consensus 160 l~v~~~~~~~~~-~~~~~~-~---~~~~~~yl~~v~W~~d~~~l~~~~~----nR~q~~~~l~~~d~~tg~~~~~~~e~- 229 (353)
T PF00930_consen 160 LFVVDLASGKTT-ELDPPN-S---LNPQDYYLTRVGWSPDGKRLWVQWL----NRDQNRLDLVLCDASTGETRVVLEET- 229 (353)
T ss_dssp EEEEESSSTCCC-EE---H-H---HHTSSEEEEEEEEEETTEEEEEEEE----ETTSTEEEEEEEEECTTTCEEEEEEE-
T ss_pred EEEEECCCCcEE-Eeeecc-c---cCCCccCcccceecCCCcEEEEEEc----ccCCCEEEEEEEECCCCceeEEEEec-
Confidence 223344333221 111110 0 0012567899999999994444432 12224567888898887665444321
Q ss_pred ecCCCCCceEEEEEc-CCCCe-EEEEeCCCc--EEEEEcccccccccccCCceeeeeecccCCCCeE-EEEEcCCCcEEE
Q 040987 550 YEPHRDAGISAVAFH-PNRRA-AVSSSYGGD--FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT-AAAFSADGSVLA 624 (762)
Q Consensus 550 ~~~h~~~~v~~~~~s-pd~~~-l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~dg~~la 624 (762)
..+- -..-....|. +++.. +.....+|- |.+++..++...... ...-.|+ -+.++++++.|.
T Consensus 230 ~~~W-v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT------------~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 230 SDGW-VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT------------SGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp SSSS-SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-------------SSS-EEEEEEEECTSSEEE
T ss_pred CCcc-eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc------------cCceeecccceEcCCCCEEE
Confidence 1111 1222355554 65554 444556665 555566655533222 2344554 477888887665
Q ss_pred -EEc-C----CeEEEEeCC-CCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 625 -VAA-E----TVITLWDPD-RNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 625 -~~~-d----~~i~iwd~~-~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
++. + ..|+.-+++ .++. ..|.........+.|||||++++-...
T Consensus 297 f~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 297 FTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred EEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEEc
Confidence 343 2 356666777 4444 455433333368999999999886543
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=1.1e-08 Score=96.79 Aligned_cols=165 Identities=14% Similarity=0.105 Sum_probs=112.5
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee-EEEEEeecCCCCCceEEEEEcCCCCeEEEEe---C
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF-TLSTIVYEPHRDAGISAVAFHPNRRAAVSSS---Y 575 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~---~ 575 (762)
....+..+++++++|++. .+....++++....... .+..... ...-+++.|..+......+. .
T Consensus 64 a~~~~~~s~~~~llAv~~---------~~K~~~~f~~~~~~~~~kl~~~~~v----~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVAT---------SSKQRAVFDYRENPKGAKLLDVSCV----PKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEe---------CCCceEEEEEecCCCcceeeeEeec----ccCcceeeeeeccceEEEEeecCC
Confidence 345567788899999987 66676677776655411 1222111 11223344444444444333 3
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE-eccccCcee
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV-IGETLTPIM 653 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~-l~~~~~~v~ 653 (762)
...+.+|....+.....+ +|-..++.++||||+++|+++. |..|+|-....--.+.. +-||..-|.
T Consensus 131 ~~~~di~s~~~~~~~~~l------------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPIL------------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS 198 (390)
T ss_pred ceeeeeecccccCcchhh------------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence 344555555544444333 6889999999999999999999 99999988765544443 347999999
Q ss_pred EEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 654 NMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
.++.-++ ..|+++|.|++ |++||+.+|+.+..+...
T Consensus 199 ~isl~~~-~~LlS~sGD~t--lr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 199 TISLTDN-YLLLSGSGDKT--LRLWDITSGKLLDTCDLS 234 (390)
T ss_pred eeeeccC-ceeeecCCCCc--EEEEecccCCcccccchh
Confidence 9999875 56999999998 999999999988665544
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=1.9e-07 Score=83.41 Aligned_cols=246 Identities=9% Similarity=0.025 Sum_probs=155.2
Q ss_pred CCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
..+|+.|+..|...+|...+.+... ...+...|.-+.-..| ...+..++.|.++++.++..+.....+....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~----- 158 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN----- 158 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-----
Confidence 3578899899999999988765421 1222222211111111 2235566788888888877543332222111
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
-.+.++++++|++++++.++...|..|.+........-. ..... .+.-.+..|+.....+|++.
T Consensus 159 -----~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-~~a~t------~D~gF~~S~s~~~~~FAv~~---- 222 (344)
T KOG4532|consen 159 -----LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-YEAPT------SDHGFYNSFSENDLQFAVVF---- 222 (344)
T ss_pred -----cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-Eeccc------CCCceeeeeccCcceEEEEe----
Confidence 136789999999999999999999999987654322211 11111 33456788999999999999
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC--eEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR--AAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.|+++.|||++....+....... .+|+.+.++.+.|++.|. +|...-.-+.+.+-|+++......+...
T Consensus 223 -----Qdg~~~I~DVR~~~tpm~~~sst-rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~--- 293 (344)
T KOG4532|consen 223 -----QDGTCAIYDVRNMATPMAEISST-RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP--- 293 (344)
T ss_pred -----cCCcEEEEEecccccchhhhccc-CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC---
Confidence 89999999999776554443332 344499999999998664 4555544577899999887655443100
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCe
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNV 640 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~ 640 (762)
...........|..-.|+.++.-+.+.+.-.+.-|++.+..
T Consensus 294 ~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srs 334 (344)
T KOG4532|consen 294 DDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRS 334 (344)
T ss_pred ccccccccccccccccccCCCcccccccchhhheeeccccc
Confidence 00001112244777788888777777765556666666543
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=3.8e-08 Score=93.26 Aligned_cols=167 Identities=11% Similarity=0.132 Sum_probs=115.3
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
....+..++.++++|++..+....+++........++....-. ....+.+.|..+......+. ..|.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-------~~~~~ai~~~~~~~sv~v~d------kagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-------PKRPTAISFIREDTSVLVAD------KAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-------ccCcceeeeeeccceEEEEe------ecCC
Confidence 3455667888999999988888777777655431221111000 22234555555555555544 1125
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
...+.+|....+..... .|| -..++.++|+||+++++++..|..|++-.+...-.+..+ .-+|
T Consensus 131 ~~~~di~s~~~~~~~~~------lGh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf----------clGH 193 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPI------LGH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF----------CLGH 193 (390)
T ss_pred ceeeeeecccccCcchh------hhh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh----------cccc
Confidence 56677777665433322 588 889999999999999999999999999887765555444 3478
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l 645 (762)
..-|..++.-++. .|++++ |++|++||+.+|+++.++
T Consensus 194 ~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 194 KEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred HhheeeeeeccCc-eeeecCCCCcEEEEecccCCccccc
Confidence 9999999997654 467776 999999999999887665
No 302
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.87 E-value=1.6e-08 Score=112.57 Aligned_cols=198 Identities=14% Similarity=0.121 Sum_probs=151.3
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
..+-..|.++.-+|...+-++|+.||.+++|....++.+.. ......++.+.|+.+|+.+..+..||.+.+|... .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 33455677777778778899999999999999988887543 2334788999999999999999999999999988 44
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
+....+.|. ....++.|-. ..+++++ .++.+.+||..-.....-+. .. |...++++
T Consensus 2284 ~~~s~qchn----------k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~------H~~gaT~l 2342 (2439)
T KOG1064|consen 2284 PYTSWQCHN----------KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TC------HDGGATVL 2342 (2439)
T ss_pred ceeccccCC----------ccccceeeee--hhhhccccCCCCCcccchhcccCcccceee---ee------cCCCceEE
Confidence 555555554 5566777765 4566654 56889999976443333322 22 26779999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
++-|..+.|++|+ .+|.|++||++..+.+..++. +. ...++++++..|.++||++
T Consensus 2343 ~~~P~~qllisgg---------r~G~v~l~D~rqrql~h~~~~---------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGG---------RKGEVCLFDIRQRQLRHTFQA---------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred EEcCcceEEEecC---------CcCcEEEeehHHHHHHHHhhh---------------hh-hhheeeccCcccceEEEEc
Confidence 9999999999999 899999999998776554421 33 5678999999999999999
Q ss_pred cccccccccc
Q 040987 585 NDELQQKDLQ 594 (762)
Q Consensus 585 ~~~~~~~~~~ 594 (762)
.....+..++
T Consensus 2398 s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2398 SEFGLLHTFP 2407 (2439)
T ss_pred cccchhhcCc
Confidence 9887777664
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=2.2e-06 Score=82.63 Aligned_cols=230 Identities=11% Similarity=-0.006 Sum_probs=140.7
Q ss_pred CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCC
Q 040987 415 DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPG 494 (762)
Q Consensus 415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 494 (762)
+|.|..+|..+|+.+....-... . ...... ..+++..+++++.++.++.||..+++.+.+........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~-------~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~--- 69 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-I-------GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS--- 69 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-C-------SSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG---
T ss_pred CCEEEEEECCCCCEEEEEECCCC-C-------CCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc---
Confidence 67899999999999888754210 0 111111 33356678887899999999999998887776522211
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
.. . ..++..++++. .++.+..+|..+++..+.......... ..........++..++.+.
T Consensus 70 ----~~----~-~~~~~~v~v~~---------~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 129 (238)
T PF13360_consen 70 ----GA----P-VVDGGRVYVGT---------SDGSLYALDAKTGKVLWSIYLTSSPPA--GVRSSSSPAVDGDRLYVGT 129 (238)
T ss_dssp ----SG----E-EEETTEEEEEE---------TTSEEEEEETTTSCEEEEEEE-SSCTC--STB--SEEEEETTEEEEEE
T ss_pred ----ce----e-eeccccccccc---------ceeeeEecccCCcceeeeecccccccc--ccccccCceEecCEEEEEe
Confidence 11 1 22344445554 567999999999998887432111111 1112222333377888888
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCC------CCeEEEEEcCCCcEEEEEcCCe-EEEEeCCCCeEEEEecc
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKK------KAMTAAAFSADGSVLAVAAETV-ITLWDPDRNVLVAVIGE 647 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~s~dg~~la~~~d~~-i~iwd~~~~~~~~~l~~ 647 (762)
.++.+..+|..+|+.+-..+ ....... ..+..-....++..+++..++. +.+ |+.+++.+-...
T Consensus 130 ~~g~l~~~d~~tG~~~w~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~- 200 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWKYP-------VGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP- 200 (238)
T ss_dssp TCSEEEEEETTTTEEEEEEE-------SSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC-
T ss_pred ccCcEEEEecCCCcEEEEee-------cCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec-
Confidence 89999999999998754442 1000000 1122222223554444444775 555 999998664332
Q ss_pred ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 648 TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 648 ~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
...+.. ....++..|+.++.++. |..||+.+|+..|.+
T Consensus 201 -~~~~~~-~~~~~~~~l~~~~~~~~--l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 201 -ISGIYS-LPSVDGGTLYVTSSDGR--LYALDLKTGKVVWQQ 238 (238)
T ss_dssp -SS-ECE-CEECCCTEEEEEETTTE--EEEEETTTTEEEEEE
T ss_pred -CCCccC-CceeeCCEEEEEeCCCE--EEEEECCCCCEEeEC
Confidence 222332 24567888888888877 999999999999864
No 304
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.84 E-value=4.3e-06 Score=80.03 Aligned_cols=285 Identities=16% Similarity=0.132 Sum_probs=158.0
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeC-----------CEEEEEEcccceEEeeec--C-Cc----
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTS-----------NTVSIFSTSTGLQISSLE--G-HK---- 114 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~-----------~~i~iwd~~~~~~~~~l~--~-h~---- 114 (762)
+.+.++|..+++.+-... .+.... +.+||||+.+.+++- -.|.+||.+|-.+...+. + |.
T Consensus 17 ~rv~viD~d~~k~lGmi~-~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID-TGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEE-EESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEee-cccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 578899988877653311 112222 678999999987641 389999999987776442 1 11
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEee
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVE 194 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (762)
.....+++|.|| |.+ ++.-.+-...|.|-|+..++.+.++....
T Consensus 95 ~~~~~~~ls~dg----k~~-~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------------------------------- 138 (342)
T PF06433_consen 95 PYKNMFALSADG----KFL-YVQNFTPATSVTVVDLAAKKVVGEIDTPG------------------------------- 138 (342)
T ss_dssp --GGGEEE-TTS----SEE-EEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------------------
T ss_pred ccccceEEccCC----cEE-EEEccCCCCeEEEEECCCCceeeeecCCC-------------------------------
Confidence 223456888998 444 55556667789999999988887765432
Q ss_pred eccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheee
Q 040987 195 DTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMR 274 (762)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~ 274 (762)
+..+| =+++..+.+.|.||.+.-..+...........
T Consensus 139 --------------------C~~iy-----------------------P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 139 --------------------CWLIY-----------------------PSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp --------------------EEEEE-----------------------EEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred --------------------EEEEE-----------------------ecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 00000 01112233455555555555552222111111
Q ss_pred eeeeccCcCeE-EEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 275 KITLHHTKKLT-VLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 275 ~~~~~~~~~v~-~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
.++....+++. .-+++..+..++.-+.+|.|+--|+.+........... ..+.+ +.-.+..
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~----------------~t~~e--~~~~WrP 237 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL----------------LTDAE--KADGWRP 237 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES----------------S-HHH--HHTTEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc----------------cCccc--cccCcCC
Confidence 22222223332 44555555556656788888888886654221000000 00000 0001122
Q ss_pred cceeEEEEecCCCEEEEEec---C-------CeEEEEecCCCceeccCCCCCCeEEEEeCCCCC-eEEEEe-cCCcEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGK---E-------GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPS-LSSISC-ADNQVHLL 421 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~---d-------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~i~ 421 (762)
+.-.-+++++..++|+..-. + ..|.++|+.+++.+.......++.++..+.+.+ +|++.+ .++.+.+|
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 33445677776666665321 1 248888999999887666667788999998876 444433 47899999
Q ss_pred EcCCceEEEEEccCC
Q 040987 422 KMPSMEIIRSISGIK 436 (762)
Q Consensus 422 d~~~~~~~~~~~~~~ 436 (762)
|..+|+.++.+.+..
T Consensus 318 D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 318 DAATGKLVRSIEQLG 332 (342)
T ss_dssp ETTT--EEEEE---S
T ss_pred eCcCCcEEeehhccC
Confidence 999999999887543
No 305
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.84 E-value=1.8e-06 Score=87.88 Aligned_cols=281 Identities=15% Similarity=0.089 Sum_probs=157.1
Q ss_pred CCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEee-ecCC----------------c
Q 040987 52 SGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISS-LEGH----------------K 114 (762)
Q Consensus 52 ~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~-l~~h----------------~ 114 (762)
.+.+.++|+++++...+......+.. ..|||||++||+..++.|.+++..+++..+. ..|- -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~-~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQD-AKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSE-EEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCcccccc-ceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 36788999999888877666677776 9999999999999999999999988755432 2220 1
Q ss_pred cceeEEEEeCCCCcccceeeeEEee-ecCCeEEEEeCC---CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 115 APVTTVIVVPASTPATKILSYCWTA-SLDGTIKYWDFS---VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~-s~d~~i~vWd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
+.-.++-|||||+ +||.. -.+..|+.+.+. .... ....+..+.+|
T Consensus 101 ~~~~~~~WSpd~~-------~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YP------------------- 149 (353)
T PF00930_consen 101 DRRSAVWWSPDSK-------YLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYP------------------- 149 (353)
T ss_dssp SSSBSEEE-TTSS-------EEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE---------------------
T ss_pred ccccceEECCCCC-------EEEEEEECCcCCceEEeeccCCccc-----cCCcccccccC-------------------
Confidence 2346788999994 44444 334445544432 1110 00011111110
Q ss_pred EEeeeccccCcCCccCCCCCCccc--cEEEEecCCccccceee----eccCCCceEEEECCCCCEEE-EEe-----CCeE
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNG--RICKCNLTESRLAGGVT----LAEMKEPQVITISSSGKYFG-IRK-----QRKL 258 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~--~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~spdg~~la-~~~-----~~~i 258 (762)
-.|..+- .+.++|+++++...... ......+..+.|++|++.|+ .-. ...+
T Consensus 150 -----------------k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 150 -----------------KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp -----------------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred -----------------CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 2233333 45567888877642121 23455678999999999454 321 2346
Q ss_pred EEEEccCchhhhheee-eeeeccCcCeEEEEEc-CCCc-EEEEeecCCeEEEE--eccCCceeecccccccccccccccC
Q 040987 259 LIWKVPDVEAERVVMR-KITLHHTKKLTVLAFH-PTQR-IVAAGDVTGRILIW--RGFGDRTFATNDNKMNLNLMNNEEE 333 (762)
Q Consensus 259 ~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~s-p~~~-~l~~~~~dg~v~vw--~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (762)
.+.|..++... ... ....+--..-....|. +++. +|.....+|.-+|+ +..++.
T Consensus 213 ~~~d~~tg~~~--~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~------------------- 271 (353)
T PF00930_consen 213 VLCDASTGETR--VVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK------------------- 271 (353)
T ss_dssp EEEEECTTTCE--EEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-------------------
T ss_pred EEEECCCCcee--EEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-------------------
Confidence 66777776543 111 1111111222355554 5554 55555567755555 443332
Q ss_pred CCCcccCCccccceeeeccccceeE-EEEecCCCEEEE-Eec----CCeEEEEecC-CCceeccCCCCCCeEEEEeCCCC
Q 040987 334 RPGVRDNDDADLCTTWHWHPSEVSV-LIFSSDGAYLYS-GGK----EGVLVVWQLD-TGKKKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~g~~l~s-~~~----dg~i~~wd~~-~~~~~~~~~~~~~v~~~~~s~~~ 406 (762)
...+....-.|.. +.++++++.|+. +.. ...|+.-+++ .+....+......-..+.|||++
T Consensus 272 ------------~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 272 ------------PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp ------------EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred ------------eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 2344444555644 677888776654 433 2467777888 66666665554444799999999
Q ss_pred CeEEEEec
Q 040987 407 SLSSISCA 414 (762)
Q Consensus 407 ~~l~~~~~ 414 (762)
++++..+.
T Consensus 340 ~y~v~~~s 347 (353)
T PF00930_consen 340 KYYVDTYS 347 (353)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEc
Confidence 99886543
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.2e-09 Score=107.61 Aligned_cols=266 Identities=14% Similarity=0.143 Sum_probs=190.1
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCC--cEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADN--QVHL 420 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i 420 (762)
...+.++.|....+|++|+.+.++|+.|+..|.|+++++.+|... ....|+..++.+.-+.||..+++.+... -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 455677788899999999999999999999999999999999875 5778899999999999999887765533 4678
Q ss_pred EEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 421 LKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 421 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
|++.+ +...+++.+. .++.|+.....-+.|+......+||+.++....++....-.. ..
T Consensus 1172 W~~~s~~~~~Hsf~ed--------------~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~------~y 1231 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED--------------KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS------SY 1231 (1516)
T ss_pred hccccccCcccccccc--------------ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh------hh
Confidence 98865 5555555432 467787765555666666779999999987765532211111 33
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcE
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDF 579 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i 579 (762)
.-....|+|+.+++.--+ .+||.+..+.+..+..+... ..-.|+|.|..++.-+
T Consensus 1232 ~~n~a~FsP~D~LIlndG--------------vLWDvR~~~aIh~FD~ft~~-------~~G~FHP~g~eVIINS----- 1285 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLILNDG--------------VLWDVRIPEAIHRFDQFTDY-------GGGGFHPSGNEVIINS----- 1285 (1516)
T ss_pred hccccccCCCcceEeeCc--------------eeeeeccHHHHhhhhhheec-------ccccccCCCceEEeec-----
Confidence 347788999998877433 58999988777666543211 1236999999988766
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc---C---------------CeEEEEeCCCCeE
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA---E---------------TVITLWDPDRNVL 641 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~---d---------------~~i~iwd~~~~~~ 641 (762)
.|||+++.+.....+ .-.-..+.|...|..+...- | ...+-+|..+.+.
T Consensus 1286 EIwD~RTF~lLh~VP-------------~Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~ 1352 (1516)
T KOG1832|consen 1286 EIWDMRTFKLLHSVP-------------SLDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSD 1352 (1516)
T ss_pred hhhhhHHHHHHhcCc-------------cccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhcccccccccc
Confidence 389999998877663 33445677777776554321 1 2345556666677
Q ss_pred EEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 642 VAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 642 ~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
+.++.+ ...+..++-+|...+|..--.
T Consensus 1353 iaTi~v-~R~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1353 IATIPV-DRCLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred ceeeec-ccchhhhhcCCccceEEEEec
Confidence 777764 356778888887788777543
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.80 E-value=3.6e-07 Score=81.37 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE------eCCeEEEEEccCchhhhheeeeeeeccC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR------KQRKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~------~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
+++..||.+.+.+.+.-..+......-...-.+.++...+++|.++ .-+..++|+++..+.. .......
T Consensus 105 ~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~-----~~~~~~~ 179 (319)
T KOG4714|consen 105 CIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL-----IPSKKAL 179 (319)
T ss_pred EecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccc-----ccccccc
Confidence 6678999999999877433322222222222233333445555433 3456677777765543 1111223
Q ss_pred cCeEEEEEcCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 282 KKLTVLAFHPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 282 ~~v~~~~~sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
..|.+++-+|.. +.+++|+.||.+-+||.+... .+...+..|..+++.+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----------------------------~p~S~l~ahk~~i~eV~ 230 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----------------------------MPVSLLKAHKAEIWEVH 230 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEccccc-----------------------------chHHHHHHhhhhhhhee
Confidence 349999999954 567788999999999986552 24567888999999999
Q ss_pred Eec-CCCEEEEEecCCeEEEEecCC
Q 040987 361 FSS-DGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 361 ~s~-~g~~l~s~~~dg~i~~wd~~~ 384 (762)
|+| ++..|+++++||.+..||..+
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCCC
Confidence 998 568899999999999999875
No 308
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.78 E-value=6.2e-06 Score=85.54 Aligned_cols=264 Identities=13% Similarity=0.067 Sum_probs=148.9
Q ss_pred cCCCEEEEEec-CCeEEEEecCCCce---eccCC----CC---------CCeEE-----EEeCCCCCeEEEEe-cCCcEE
Q 040987 363 SDGAYLYSGGK-EGVLVVWQLDTGKK---KFLPR----IG---------SPLLY-----FTESPDPSLSSISC-ADNQVH 419 (762)
Q Consensus 363 ~~g~~l~s~~~-dg~i~~wd~~~~~~---~~~~~----~~---------~~v~~-----~~~s~~~~~l~~~~-~d~~i~ 419 (762)
.||++|+.-.. ...|...+++..+. +.++. |+ ..|.+ +=++|||+.+...+ ..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888887654 34566566555443 21111 11 11211 22456777654332 245688
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+.|.++.+...++.-. +....++++|+|+++++.+.+ .++...+..... ..+.....
T Consensus 219 vID~etmeV~~qV~Vd-----------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni~------ 279 (635)
T PRK02888 219 AVDAETMEVAWQVMVD-----------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNIA------ 279 (635)
T ss_pred EEECccceEEEEEEeC-----------CCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEchH------
Confidence 8888887777665432 244678999999999887632 122222221111 00000000
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-----CCceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-----QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
..-++.++|++...++ +.|.+.|..+ ......+.. ......+.++|||+++
T Consensus 280 ------~iea~vkdGK~~~V~g-----------n~V~VID~~t~~~~~~~v~~yIPV-------GKsPHGV~vSPDGkyl 335 (635)
T PRK02888 280 ------RIEEAVKAGKFKTIGG-----------SKVPVVDGRKAANAGSALTRYVPV-------PKNPHGVNTSPDGKYF 335 (635)
T ss_pred ------HHHHhhhCCCEEEECC-----------CEEEEEECCccccCCcceEEEEEC-------CCCccceEECCCCCEE
Confidence 0013455777666543 5899999887 233333322 4456689999999998
Q ss_pred EEEeC-CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC----------
Q 040987 571 VSSSY-GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR---------- 638 (762)
Q Consensus 571 ~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~---------- 638 (762)
++++. +.++.|.|+...+....-+...-.+......-.......+|.++|....+-. |..|..||+..
T Consensus 336 yVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~ 415 (635)
T PRK02888 336 IANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKV 415 (635)
T ss_pred EEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccC
Confidence 77664 7899999998765321100000000000001134455789999998666666 99999999886
Q ss_pred CeEEEEeccccCcee-----EEEEeCCCCEEEEEEc
Q 040987 639 NVLVAVIGETLTPIM-----NMSFVGSSEYLVATSW 669 (762)
Q Consensus 639 ~~~~~~l~~~~~~v~-----~~~~s~dg~~l~s~~~ 669 (762)
...+..+.-|..+.. .=.-.|||++|++...
T Consensus 416 ~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 416 DPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 345555555544322 1123679999999753
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.9e-07 Score=89.60 Aligned_cols=293 Identities=13% Similarity=0.110 Sum_probs=181.5
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
-|.+.|+.+.-. ..+++.+++.||.++.|.-..-... +.+..+..|...|.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGv---------------------------EfVKhFraHL~~I~s 58 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGV---------------------------EFVKHFRAHLGVILS 58 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccce---------------------------eehhhhHHHHHHHHh
Confidence 366666665544 5668999999999999975331111 245677889999999
Q ss_pred EEEecCCCEEEEEec-CCeEEEEecCCCceeccCC---CCCCeEEEEeCCCC--CeEEEE-ecCCcEEEEEcCCce-EEE
Q 040987 359 LIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPR---IGSPLLYFTESPDP--SLSSIS-CADNQVHLLKMPSME-IIR 430 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~~~--~~l~~~-~~d~~i~i~d~~~~~-~~~ 430 (762)
++.+-+|..+.+.+. |..++++|+++-....... .++.+.. ..++.. ..++++ ..++.+.++|-.... ...
T Consensus 59 l~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~ 137 (558)
T KOG0882|consen 59 LAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG 137 (558)
T ss_pred hhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccc
Confidence 999999999999777 9999999998766543222 2222222 223321 134433 347889999976533 222
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC-CC-----ceeeEEeecccccCCCCcceeEEEE
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD-DR-----GISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~-----~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
.+.+. |..+|..+.+++-+..+++....|.|.-|.... -+ ....+... ..............++
T Consensus 138 ~fkkl---------H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 138 YFKKL---------HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSF 207 (558)
T ss_pred eeccc---------ccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccccc-chhhcccccccCccce
Confidence 22221 237889999999999999998899999998873 11 11111000 0000001124567889
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
.|+|+|..+++-+ .|..|++++..+++..+.+.......| +-|... +.+-.+
T Consensus 208 Efsp~g~qistl~---------~DrkVR~F~~KtGklvqeiDE~~t~~~---------~q~ks~----------y~l~~V 259 (558)
T KOG0882|consen 208 EFSPDGAQISTLN---------PDRKVRGFVFKTGKLVQEIDEVLTDAQ---------YQPKSP----------YGLMHV 259 (558)
T ss_pred EEccccCcccccC---------cccEEEEEEeccchhhhhhhccchhhh---------hccccc----------ccccee
Confidence 9999999999888 889999999999988776643211111 111111 111111
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEe
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l 645 (762)
.-+....... .. .......-+.+.|...|++|..|+--.|++.++.++++.+.+
T Consensus 260 elgRRmaver--el-----ek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 260 ELGRRMAVER--EL-----EKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred ehhhhhhHHh--hH-----hhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 1111111100 00 000123345688999999999998666999999998877765
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=8.2e-07 Score=91.98 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=78.6
Q ss_pred ceeEEEEec----CCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeC-CEEEEEEcccceEEeeecCCccc
Q 040987 42 RSFIFAVAR----SSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAP 116 (762)
Q Consensus 42 ~~~~~a~~~----~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~-~~i~iwd~~~~~~~~~l~~h~~~ 116 (762)
...+||+++ .-|.|.+|-- +++..+-..-+-.+.+ ++|.|..-.||.|-+ |.+.+|...+.+....-..|..+
T Consensus 26 sePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt~P~hatS-LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~ 103 (1416)
T KOG3617|consen 26 SEPLFAVASFSPERGGSVTIFAD-TGEPQRDVTYPVHATS-LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAP 103 (1416)
T ss_pred CCceeEEEEecCCCCceEEEEec-CCCCCcccccceehhh-hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCC
Confidence 366888877 3577776633 3333332333344565 999999988888886 99999999888777777789999
Q ss_pred eeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 117 VTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 117 V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
|..+.||++| ..|.|+..-|.|.+|...-
T Consensus 104 i~~l~wS~~G-------~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 104 IQGLDWSHDG-------TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceeEEecCCC-------CeEEEcCCCceeEEEEeee
Confidence 9999999999 6788999999999998763
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=9.2e-08 Score=97.30 Aligned_cols=284 Identities=13% Similarity=0.146 Sum_probs=182.7
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-eccCCC--CCCeEEEEeCCCC--CeEEEEecCCcEEEEEcCC--
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRI--GSPLLYFTESPDP--SLSSISCADNQVHLLKMPS-- 425 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~--~~~v~~~~~s~~~--~~l~~~~~d~~i~i~d~~~-- 425 (762)
.+.+..+..+|.|+-++.++.-| +.+.|++..-. -....| +-.+....|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45677889999999999988765 55666664332 222222 2246667787654 4455555666777888754
Q ss_pred -ceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 426 -MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 426 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
......+-+|. ..++.+.|.|+. ..+++++-|-.+..||+++.....-....- ......
T Consensus 103 ~~aIef~lhghs----------raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w---------~s~asq 163 (1081)
T KOG0309|consen 103 SNAIEFVLHGHS----------RAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW---------RSAASQ 163 (1081)
T ss_pred ccceEEEEecCc----------cceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc---------cccCce
Confidence 23334455665 788999999864 478899999999999998764322111111 334567
Q ss_pred EEEecC-CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEE
Q 040987 504 VALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKV 581 (762)
Q Consensus 504 ~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~i 581 (762)
++|+-. +..+|+. ..+.|.+||.+.+..+... .++| ...|+.+.|..- ...+.+++.|++|+.
T Consensus 164 Vkwnyk~p~vlass----------hg~~i~vwd~r~gs~pl~s----~K~~-vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASS----------HGNDIFVWDLRKGSTPLCS----LKGH-VSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred eeecccCcchhhhc----------cCCceEEEeccCCCcceEE----eccc-ceeeehHHHhhhhhhhhcccCCCCceee
Confidence 888764 4555554 5578999999987654432 2457 778888888652 345778899999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc--EEEEE-cCCeE---------EEEeCCCC-eEEEEeccc
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS--VLAVA-AETVI---------TLWDPDRN-VLVAVIGET 648 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~--~la~~-~d~~i---------~iwd~~~~-~~~~~l~~~ 648 (762)
||........... .....+|..-.+-|-|+ ++.-- ++..+ ..|+..++ +.+..+.||
T Consensus 229 w~y~kSt~e~~~~----------vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH 298 (1081)
T KOG0309|consen 229 WDYSKSTTESKRT----------VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH 298 (1081)
T ss_pred eccccccccccee----------ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc
Confidence 9987544322110 01234455555555333 22111 12233 34444443 678899999
Q ss_pred cCceeEEEEeCCCC----------EEEEEEcCCCCeEEEEECCCC
Q 040987 649 LTPIMNMSFVGSSE----------YLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 649 ~~~v~~~~~s~dg~----------~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.+.|..+.|-..+. .|++-+.|.. +++|.+.+.
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~--lrlWpI~~~ 341 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT--LRLWPIDSQ 341 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCc--eEeeeccHH
Confidence 99888777755332 6999999998 999998763
No 312
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=3.5e-05 Score=69.15 Aligned_cols=141 Identities=11% Similarity=0.015 Sum_probs=89.5
Q ss_pred cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec
Q 040987 294 RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK 373 (762)
Q Consensus 294 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 373 (762)
.+++.|+..+.+.--|..++...- ...-+ .+|.+-+.- -|++++.|..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~W-----------------------------e~ilg--~RiE~sa~v-vgdfVV~GCy 71 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIW-----------------------------EAILG--VRIECSAIV-VGDFVVLGCY 71 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEe-----------------------------ehhhC--ceeeeeeEE-ECCEEEEEEc
Confidence 467778888888888887775432 11111 122222211 3668999999
Q ss_pred CCeEEEEecCCCceeccCCCCCCe-EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPL-LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.|.+++.+..+|.........+.| ......+++..+..++.|++.+..|..+...+...+... +...+.
T Consensus 72 ~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG----------~~f~sP 141 (354)
T KOG4649|consen 72 SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG----------GTFVSP 141 (354)
T ss_pred cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC----------ceeccc
Confidence 999999999999664322222222 234567899999999999999999999988777755433 334456
Q ss_pred EEeCCCCEEEEeecCceEEEEEcC
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
++.|-...|.++...|.+.--...
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred eecCCCceEEEEeccceEEEEccC
Confidence 666733344444555555444443
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=3e-08 Score=63.65 Aligned_cols=39 Identities=28% Similarity=0.649 Sum_probs=36.9
Q ss_pred ceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEe
Q 040987 104 GLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWD 149 (762)
Q Consensus 104 ~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd 149 (762)
|++++++++|.+.|++|+|+|++ .+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-------~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-------NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-------SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-------ccceeeCCCCEEEEEC
Confidence 57889999999999999999999 7999999999999997
No 314
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.75 E-value=2.7e-05 Score=76.23 Aligned_cols=274 Identities=12% Similarity=0.023 Sum_probs=137.9
Q ss_pred eEEEEecCCCEEEEEec---CCeEEEEecCCCceeccCCCCC-CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 357 SVLIFSSDGAYLYSGGK---EGVLVVWQLDTGKKKFLPRIGS-PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+.-+|.+||+.|+.++. ...+++.|+++++..++..... ......++++.+.++.......+...|+.+.+....+
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 34468899987776664 3568889999999887766542 2335667788888877767779999999998765555
Q ss_pred ccCCCCCCCCCcccCceeeEEE--eCCCCEEEEee----------------------cCceEEEEEcCCCCceeeEEeec
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAF--NHDGGLVALRA----------------------ENYCIHFYSLLDDRGISEVQVCE 488 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~ 488 (762)
.... ..+....| +.|+..++-.- -...|.-.|+.+++....+..
T Consensus 119 ~~p~----------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~-- 186 (386)
T PF14583_consen 119 EVPD----------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED-- 186 (386)
T ss_dssp E--T----------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE--
T ss_pred ECCc----------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec--
Confidence 5443 44444444 34566544321 113456667777654332222
Q ss_pred ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC-ceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 489 RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN-KEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
...+..+.|+|....+++-+...+.+. -|. +||-+.+.. ....+.. ... ...+.-=-|.|||
T Consensus 187 ---------~~wlgH~~fsP~dp~li~fCHEGpw~~--Vd~--RiW~i~~dg~~~~~v~~---~~~-~e~~gHEfw~~DG 249 (386)
T PF14583_consen 187 ---------TDWLGHVQFSPTDPTLIMFCHEGPWDL--VDQ--RIWTINTDGSNVKKVHR---RME-GESVGHEFWVPDG 249 (386)
T ss_dssp ---------SS-EEEEEEETTEEEEEEEEE-S-TTT--SS---SEEEEETTS---EESS------T-TEEEEEEEE-TTS
T ss_pred ---------CccccCcccCCCCCCEEEEeccCCcce--ece--EEEEEEcCCCcceeeec---CCC-CcccccccccCCC
Confidence 566889999996655555443333222 122 445554322 2222211 111 3345556799999
Q ss_pred CeEEEEeC-----CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC------------
Q 040987 568 RAAVSSSY-----GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET------------ 629 (762)
Q Consensus 568 ~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~------------ 629 (762)
..|..-+. +..|.-+|..+++..... .......+.-++||++++.=+ |.
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~-------------~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLM-------------EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEE-------------EE-SEEEEEE-TTSSEEEEEE---------------
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEE-------------eCCceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 98776432 334666677766543222 122344667789999887522 31
Q ss_pred ----eEEEEeCCCCeEEEEe---------ccccC-ceeEEEEeCCCCEEEEEEc-CCC
Q 040987 630 ----VITLWDPDRNVLVAVI---------GETLT-PIMNMSFVGSSEYLVATSW-GSK 672 (762)
Q Consensus 630 ----~i~iwd~~~~~~~~~l---------~~~~~-~v~~~~~s~dg~~l~s~~~-d~~ 672 (762)
-|++++++.++..... .++.. .-..+.|||||++++..|. .|.
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~ 374 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGP 374 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCC
Confidence 5677888877654222 22211 1356899999999888764 444
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=2.2e-06 Score=82.53 Aligned_cols=225 Identities=15% Similarity=0.072 Sum_probs=138.1
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEE--eCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFT--ESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
+|+|..||..+|+............... ..+++..+++++.++.+..||..+|+.+..+.... .+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-----------~~~~ 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-----------PISG 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-----------CGGS
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-----------cccc
Confidence 6889999999998864433321121122 23366777777899999999999999988877532 1111
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
.. ..++..+++++.++.++.+|..+++...+........ ...........++..++++. .++.|
T Consensus 71 ~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---------~~g~l 134 (238)
T PF13360_consen 71 AP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP------AGVRSSSSPAVDGDRLYVGT---------SSGKL 134 (238)
T ss_dssp GE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT------CSTB--SEEEEETTEEEEEE---------TCSEE
T ss_pred ee-eecccccccccceeeeEecccCCcceeeeeccccccc------cccccccCceEecCEEEEEe---------ccCcE
Confidence 11 2234566777788899999999999887743221100 00112222333377777776 67899
Q ss_pred EEEEecCCCceeEEEEEeecCCCCC------ce-EEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 532 KFWVSGTQNKEFTLSTIVYEPHRDA------GI-SAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 532 ~iwd~~~~~~~~~~~~~~~~~h~~~------~v-~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
..+|+.+++.+...... .+.... .+ ..+.+. ++ .++.++.++.+.-+|+.+++..-..
T Consensus 135 ~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~----------- 199 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVG--EPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSK----------- 199 (238)
T ss_dssp EEEETTTTEEEEEEESS--TT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEE-----------
T ss_pred EEEecCCCcEEEEeecC--CCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEe-----------
Confidence 99999999887766431 111011 11 233333 44 6666777775433499988744211
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA 643 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~ 643 (762)
....+.. ....++..|++++ ++.|..||+++|+.+-
T Consensus 200 --~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 200 --PISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp --CSS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred --cCCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 0111222 1346777888777 9999999999998763
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.3e-07 Score=87.97 Aligned_cols=261 Identities=13% Similarity=0.088 Sum_probs=174.8
Q ss_pred CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc---eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-Cc
Q 040987 393 IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-NY 468 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg 468 (762)
|...|+.+.. ...+++..++.||.++.|.-..- +.+..+..|. +.+.+++.+-++.++.+.+. |.
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL----------~~I~sl~~S~dg~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL----------GVILSLAVSYDGWLFRSVEDPDH 76 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHH----------HHHHhhhccccceeEeeccCccc
Confidence 3444444433 34578899999999999976541 2233344444 67889999999999999777 99
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC-CC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD-GS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
.++++|+.+-..+..+....- ...+. ...+|. -. .++++.. .++.+.++|-....+.....
T Consensus 77 s~KvfDvEn~DminmiKL~~l--------Pg~a~-wv~skGd~~s~IAVs~~--------~sg~i~VvD~~~d~~q~~~f 139 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDL--------PGFAE-WVTSKGDKISLIAVSLF--------KSGKIFVVDGFGDFCQDGYF 139 (558)
T ss_pred ceeEEEeeccchhhhcccccC--------CCceE-EecCCCCeeeeEEeecc--------cCCCcEEECCcCCcCcccee
Confidence 999999987665543332111 11111 112221 12 4444443 67899999987665332221
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc-cccccccCCceeeee-----ecccCCCCeEEEEEcCCC
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE-LQQKDLQSSGWSCHA-----VGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~s~dg 620 (762)
..-| ..+|..+.+.|-+..+++....|.|.-|..... +.... ...|.... ...-.....+++.|+|+|
T Consensus 140 ---kklH-~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~--~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 140 ---KKLH-FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT--NLNFELKHETDLYGFPKAKTEPTSFEFSPDG 213 (558)
T ss_pred ---cccc-cCceEEEEeeccccceeeccccceeEeecCCCcccCccc--cccccccccchhhcccccccCccceEEcccc
Confidence 1346 889999999999999999988999999998741 11110 00111110 111234677899999999
Q ss_pred cEEEEEc-CCeEEEEeCCCCeEEEEecc--------------------------------cc-CceeEEEEeCCCCEEEE
Q 040987 621 SVLAVAA-ETVITLWDPDRNVLVAVIGE--------------------------------TL-TPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 621 ~~la~~~-d~~i~iwd~~~~~~~~~l~~--------------------------------~~-~~v~~~~~s~dg~~l~s 666 (762)
..+++-+ |..|++++..+|++++.+.. |. -.-..+.|...|++|+.
T Consensus 214 ~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly 293 (558)
T KOG0882|consen 214 AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY 293 (558)
T ss_pred CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe
Confidence 9999887 99999999999876554421 11 12456789999999999
Q ss_pred EEcCCCCeEEEEECCCCceeeEEE
Q 040987 667 TSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
++-=| |++.++.+++..+.+-
T Consensus 294 ~t~~g---ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 294 GTILG---IKVINLDTNTVVRILG 314 (558)
T ss_pred eccee---EEEEEeecCeEEEEec
Confidence 99988 9999999998876553
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=0.00019 Score=64.57 Aligned_cols=161 Identities=10% Similarity=0.051 Sum_probs=97.1
Q ss_pred EEecCCccccceeeeccCCCceEEEECCCCCEEE-E-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-I-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
.|..+.++++ +. .-+..-+|.+.++ . +..+.+.--|..++... ....-...|.+-+.- -|++
T Consensus 2 rW~vd~~kCV-------Da--spLVV~~dskT~v~igSHs~~~~avd~~sG~~~------We~ilg~RiE~sa~v-vgdf 65 (354)
T KOG4649|consen 2 RWAVDLRKCV-------DA--SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLI------WEAILGVRIECSAIV-VGDF 65 (354)
T ss_pred ceeccchhhc-------cC--CcEEEecCCceEEEEecCCceEEEecCCCCcEE------eehhhCceeeeeeEE-ECCE
Confidence 4666666666 11 2233445555443 3 35677777788887753 222233445444433 4668
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce-eEEEEecCCCEEEEEecC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV-SVLIFSSDGAYLYSGGKE 374 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~g~~l~s~~~d 374 (762)
++.|...|.+++.+..++.... .+..- +.| ......+++..++.++.|
T Consensus 66 VV~GCy~g~lYfl~~~tGs~~w------------------------------~f~~~-~~vk~~a~~d~~~glIycgshd 114 (354)
T KOG4649|consen 66 VVLGCYSGGLYFLCVKTGSQIW------------------------------NFVIL-ETVKVRAQCDFDGGLIYCGSHD 114 (354)
T ss_pred EEEEEccCcEEEEEecchhhee------------------------------eeeeh-hhhccceEEcCCCceEEEecCC
Confidence 9999999999999998885432 11111 111 123456788999999999
Q ss_pred CeEEEEecCCCceeccCCCCCCe-EEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPL-LYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
++.+..|..+...++....++.+ .+.+..|-...|+++...|.+.-...++
T Consensus 115 ~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 115 GNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred CcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 99999999998887765555543 3455666334444455555555444443
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.65 E-value=4.8e-05 Score=83.05 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=148.1
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
+.|.++.|..+...++.+...|.|.+-|.++... .....-...|.+++|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------------eivg~vd~GI~aasw 117 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------------EIVGNVDNGISAASW 117 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------------------eeeeeccCceEEEee
Confidence 5899999999999999999999999998765432 223334568999999
Q ss_pred ecCCCEEEEEecCCeEEEEecC----C-------------------Cce-eccC---------------------CCCCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLD----T-------------------GKK-KFLP---------------------RIGSP 396 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~----~-------------------~~~-~~~~---------------------~~~~~ 396 (762)
+||++.++..+..+++.+-+-. . |+. ..+. ...+.
T Consensus 118 S~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~ 197 (1265)
T KOG1920|consen 118 SPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH 197 (1265)
T ss_pred cCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC
Confidence 9999999988887777664320 0 000 0000 01122
Q ss_pred eEEEEeCCCCCeEEEEe-----cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCc
Q 040987 397 LLYFTESPDPSLSSISC-----ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENY 468 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg 468 (762)
=.++.|--||+++++.. ....|++||.+ |.+-..-.... +.-.+++|-|.|..+++.. .|+
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~----------~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE----------GLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc----------ccccceeecCCCCeEeeeeecCCCC
Confidence 34589999999999843 23789999987 43322211111 3446899999999988764 456
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
.|.+|.-+.-+. ..+...... ....+..++|+.++..||+.... .....|++|-...-.-. ++..
T Consensus 267 ~IvffErNGL~h-g~f~l~~p~------de~~ve~L~Wns~sdiLAv~~~~------~e~~~v~lwt~~NyhWY--LKq~ 331 (1265)
T KOG1920|consen 267 DIVFFERNGLRH-GEFVLPFPL------DEKEVEELAWNSNSDILAVVTSN------LENSLVQLWTTGNYHWY--LKQE 331 (1265)
T ss_pred cEEEEecCCccc-cccccCCcc------cccchheeeecCCCCceeeeecc------cccceEEEEEecCeEEE--EEEE
Confidence 788887643221 111111110 03348999999999999984311 04456999988765322 2221
Q ss_pred eecCCCCCceEEEEEcCCC-CeEEEEeCCCcEEEEEc
Q 040987 549 VYEPHRDAGISAVAFHPNR-RAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~i~iwd~ 584 (762)
..-+. . . -+.|+|.. ..|..-..+|...++++
T Consensus 332 l~~~~-~-~--~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 332 LQFSQ-K-A--LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred Eeccc-c-c--cccccCCCceeEEEEecCCcEEEEEE
Confidence 11111 1 1 17788742 23333335666555554
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.64 E-value=2.5e-05 Score=83.20 Aligned_cols=300 Identities=13% Similarity=0.041 Sum_probs=168.8
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC-------eE--EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP-------LL--YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-------v~--~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
+..++.++.++.++..|..+|+.+........ +. .++. .++..+++++.++.+.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34677777789999999999987543222211 00 0111 12267778889999999999999999887643
Q ss_pred CCCCCCCCcccCce-eeEEEeCCCCEEEEee---------cCceEEEEEcCCCCceeeEEeecccccCCCCc--------
Q 040987 436 KLPCPLPEEYKGLC-RDIAFNHDGGLVALRA---------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDV-------- 497 (762)
Q Consensus 436 ~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------- 497 (762)
.... ....+ ....+. +..+++++ .++.+..+|..+++..................
T Consensus 140 ~~~~-----~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 140 DQVP-----PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred CCcC-----cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 3100 00001 112222 23454543 36789999999999887765431100000000
Q ss_pred --ceeE-EEEEEecCCCeEEEEeeec-ccc--------CCCceeEEEEEEecCCCceeEEEEEeecCCCCC----ceEEE
Q 040987 498 --TVVV-TLVALSQDGSLMSTVDIKL-AEE--------GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDA----GISAV 561 (762)
Q Consensus 498 --~~~v-~~~~~sp~g~~l~~~~~~~-~~~--------~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~----~v~~~ 561 (762)
...+ ...++.+.+..++.++.+. +.. ....++.+.-+|..+++..+..+. ..| .. .....
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~---~~~-~~~~~~~~s~p 288 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT---TPH-DLWDYDGPNQP 288 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC---CCC-CCcccccCCCC
Confidence 0011 1345555566666665211 000 001234899999999999887653 111 10 00001
Q ss_pred EEc----CCCC---eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE---------
Q 040987 562 AFH----PNRR---AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV--------- 625 (762)
Q Consensus 562 ~~s----pd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~--------- 625 (762)
.+. -++. .++.++.+|.+...|..+++.+-..+ .. ...++.+| +...+.
T Consensus 289 ~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~-------~~-------~~~~~~~~-~~vyv~~~~~~~~~~ 353 (488)
T cd00216 289 SLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP-------EV-------EQPMAYDP-GLVYLGAFHIPLGLP 353 (488)
T ss_pred eEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE-------ee-------ccccccCC-ceEEEccccccccCc
Confidence 111 1333 57778889999999999998754431 00 11123333 221111
Q ss_pred --------Ec-CCeEEEEeCCCCeEEEEecccc--------CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeE
Q 040987 626 --------AA-ETVITLWDPDRNVLVAVIGETL--------TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688 (762)
Q Consensus 626 --------~~-d~~i~iwd~~~~~~~~~l~~~~--------~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~ 688 (762)
.. +|.+.-.|+.+|+.+-...... .+...-...-.+..|+.++.||. |+.+|.++|+++|+
T Consensus 354 ~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~--l~ald~~tG~~lW~ 431 (488)
T cd00216 354 PQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGY--FRAFDATTGKELWK 431 (488)
T ss_pred ccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCe--EEEEECCCCceeeE
Confidence 12 5778888888888766554220 11111111125578888888988 99999999999999
Q ss_pred EEEee
Q 040987 689 YLLHV 693 (762)
Q Consensus 689 ~~~~~ 693 (762)
++...
T Consensus 432 ~~~~~ 436 (488)
T cd00216 432 FRTPS 436 (488)
T ss_pred EECCC
Confidence 88753
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=1.3e-05 Score=87.18 Aligned_cols=281 Identities=11% Similarity=0.114 Sum_probs=159.3
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
.+.|.++.|..+...++.+..+|.|.+-|.++............|.+++||||+..++..+..+++.+-.- +..++..-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence 46799999999999999999999999999998888777778889999999999999999887777665432 22222211
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
.- ...-.+.++.+-+|-... =.-+.-..++....-................=+.+.|--||++
T Consensus 147 ~L----------------~~d~~~~sk~v~VGwGrk-eTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~ 209 (1265)
T KOG1920|consen 147 PL----------------DADDERKSKFVNVGWGRK-ETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY 209 (1265)
T ss_pred cc----------------ccccccccccceeccccc-ceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE
Confidence 10 111112222222221111 0111111111000000000000000000223467899999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe---CCCcEEEEEcccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS---YGGDFKVWICNDELQ 589 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~---~dg~i~iwd~~~~~~ 589 (762)
+|+...... .+...|++||.+ +.....- .+. .+.-.+++|-|.|..+++-. .|+.|.+|.-+.-..
T Consensus 210 fAVs~~~~~----~~~RkirV~drE-g~Lns~s-----e~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h 278 (1265)
T KOG1920|consen 210 FAVSFVESE----TGTRKIRVYDRE-GALNSTS-----EPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH 278 (1265)
T ss_pred EEEEEEecc----CCceeEEEeccc-chhhccc-----Ccc-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence 999652111 033799999988 3322111 111 33345899999999998764 456788888654322
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE---c-CCeEEEEeCCCCe--EEEEeccccCceeEEEEeCC-CC
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA---A-ETVITLWDPDRNV--LVAVIGETLTPIMNMSFVGS-SE 662 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~---~-d~~i~iwd~~~~~--~~~~l~~~~~~v~~~~~s~d-g~ 662 (762)
- .+. .........+..++|+.++..||+. . ...|++|-+.+.. +.+.+.-..... +.|+|- ..
T Consensus 279 g-~f~-------l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~ 348 (1265)
T KOG1920|consen 279 G-EFV-------LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEK 348 (1265)
T ss_pred c-ccc-------cCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCce
Confidence 1 110 0011123448999999999999984 3 4459999988763 222332222222 677773 22
Q ss_pred EEEEEEcCCC
Q 040987 663 YLVATSWGSK 672 (762)
Q Consensus 663 ~l~s~~~d~~ 672 (762)
.|..-..+|.
T Consensus 349 ~L~v~~~sG~ 358 (1265)
T KOG1920|consen 349 TLHVLRESGQ 358 (1265)
T ss_pred eEEEEecCCc
Confidence 3333334444
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=3.6e-06 Score=87.44 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=61.7
Q ss_pred CceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 237 EPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.+.+++|+|..-.|+.+ .-|.+.+|...+.+.- .....|..+|..+.|||+|..|+++..-|.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-----tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-----TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceee-----eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45679999998888876 6799999999887764 6777899999999999999999999999999999875
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=3.6e-08 Score=102.13 Aligned_cols=220 Identities=13% Similarity=0.129 Sum_probs=155.8
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
+.+..|....+|++|+-+.++|+.|+..|.|+++++.++.. .....+|..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~------------------------------e~s~ncH~S 1144 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM------------------------------EESVNCHQS 1144 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc------------------------------ccccccccc
Confidence 45567888999999999999999999999999999987743 346678999
Q ss_pred ceeEEEEecCCCEEEEEecCC--eEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEG--VLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
+|+.+.-+.||..+++.+.-. -..+|++..- .-..|. ..-.++.|+.....-+.|+......+||+.++..+.+
T Consensus 1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~---~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASST---GGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred ccccccccCCcceeeeeccccCchHHHhccccc---cCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 999999999998877665433 4678988651 111121 2345677877766666777778899999999877766
Q ss_pred -EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 432 -ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 432 -~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
+.+... . ...-....|+|+..+++ .|| .+||.+..+.+..+.... .-..-.|+|.|
T Consensus 1222 ylt~~~~-~------~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-----------~~~~G~FHP~g 1278 (1516)
T KOG1832|consen 1222 YLTDTVT-S------SYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-----------DYGGGGFHPSG 1278 (1516)
T ss_pred hcCcchh-h------hhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-----------ecccccccCCC
Confidence 332211 0 01226788999988765 455 579998876665554321 12233689999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
..++..+ .|||+++.+.....+. -.-..+.|+..|..+..
T Consensus 1279 ~eVIINS--------------EIwD~RTF~lLh~VP~--------Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1279 NEVIINS--------------EIWDMRTFKLLHSVPS--------LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ceEEeec--------------hhhhhHHHHHHhcCcc--------ccceEEEeccCccchhh
Confidence 9988876 6999999887665532 23356788888876543
No 323
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.56 E-value=0.00049 Score=67.61 Aligned_cols=322 Identities=14% Similarity=0.129 Sum_probs=135.6
Q ss_pred ecCCcceeeee------cCcccccCCceeecCCCEEEEEeC----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 59 EYPAVNSKMIR------GGRSYVSSPPAFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 59 ~~~~~~~~~~~------~h~~~v~~~~~~s~dg~~la~~~~----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
|-.++.+++.. .|..+-.. -+|.+||+.|+++++ ..+.+.|+++++..+.-.+-........++|+++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~-~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~- 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQ-NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR- 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS---B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS-
T ss_pred CCCCCceEEEecCCCCcccceeecC-CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC-
Confidence 44455555432 24455554 779999988888873 6889999999886664443333344566788883
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEE-EeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFS-MVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
.++-......|+--|+++++....+.....-.. ..+ +
T Consensus 94 ------~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~--------------------v---------------- 131 (386)
T PF14583_consen 94 ------ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTW--------------------V---------------- 131 (386)
T ss_dssp ------EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEE--------------------E----------------
T ss_pred ------eEEEEECCCeEEEEECCcCcEEEEEECCcccccccce--------------------e----------------
Confidence 433344456888999999876655554432111 110 0
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEE
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 287 (762)
...|++..+--....+.. ... . .+....++..+.-...|.-.|+.+++. +........+..+
T Consensus 132 --~n~d~t~~~g~e~~~~d~-~~l---~------~~~~f~e~~~a~p~~~i~~idl~tG~~------~~v~~~~~wlgH~ 193 (386)
T PF14583_consen 132 --ANSDCTKLVGIEISREDW-KPL---T------KWKGFREFYEARPHCRIFTIDLKTGER------KVVFEDTDWLGHV 193 (386)
T ss_dssp --E-TTSSEEEEEEEEGGG---------------SHHHHHHHHHC---EEEEEEETTT--E------EEEEEESS-EEEE
T ss_pred --eCCCccEEEEEEEeehhc-cCc---c------ccHHHHHHHhhCCCceEEEEECCCCce------eEEEecCccccCc
Confidence 011111111000000000 000 0 000000011112235677778888875 3444456678899
Q ss_pred EEcCCCcEEEEeecCC-----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc--cceeEEE
Q 040987 288 AFHPTQRIVAAGDVTG-----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP--SEVSVLI 360 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~ 360 (762)
.|+|....+++-+..| .-++|-+..... ....+..|. ..+..=-
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-----------------------------~~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-----------------------------NVKKVHRRMEGESVGHEF 244 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------------------------------EESS---TTEEEEEEE
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-----------------------------cceeeecCCCCccccccc
Confidence 9999655444433322 135665533211 111111121 2233346
Q ss_pred EecCCCEEEEEe-----cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC----------------cEE
Q 040987 361 FSSDGAYLYSGG-----KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN----------------QVH 419 (762)
Q Consensus 361 ~s~~g~~l~s~~-----~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----------------~i~ 419 (762)
|.|||..|..-+ .+..|.-+|..+++...+...+ ....+..++||++++-=+.|. .|+
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 889998876533 2456788899988765443333 345666789998876433321 456
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCccc-CceeeEEEeCCCCEEEEeec-CceEEEE
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYK-GLCRDIAFNHDGGLVALRAE-NYCIHFY 473 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~-dg~i~i~ 473 (762)
++++..++... +..|.........++ ..=....|+||+++++..+. .|...||
T Consensus 324 ~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 324 LFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp EEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred EeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 67777655432 222211000000000 01146899999999887764 3444444
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=3.3e-07 Score=84.97 Aligned_cols=150 Identities=11% Similarity=0.108 Sum_probs=115.7
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.+..+-+-|++++-..... . ...|.++.|...++++..|..+|.|..+|++.... ...|..+.. +
T Consensus 232 ~sqqv~L~nvetg~~qsf~-------s-ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-----G~~~~a~rl--y 296 (425)
T KOG2695|consen 232 LSQQVLLTNVETGHQQSFQ-------S-KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-----GNGWCAQRL--Y 296 (425)
T ss_pred ccceeEEEEeecccccccc-------c-chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-----CCCcceEEE--E
Confidence 5678889999988543322 2 67899999999899999999999999999987622 223433322 4
Q ss_pred CCCCeEEEEEcC-CCcEEEEEc-CCeEEEEeCCCCeE---EEEeccccCceeEE--EEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 607 KKKAMTAAAFSA-DGSVLAVAA-ETVITLWDPDRNVL---VAVIGETLTPIMNM--SFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 607 ~~~~i~~~~~s~-dg~~la~~~-d~~i~iwd~~~~~~---~~~l~~~~~~v~~~--~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
|...|+++..-. ++++|.+.+ +|.|.+||..--++ +....||...-.-+ -..+....++++++|.. .+||.
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy--tRiWs 374 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY--TRIWS 374 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE--EEEEe
Confidence 788999988766 777777777 99999999987777 88888986653333 34456778999999998 99999
Q ss_pred CCCCceeeEEEEee
Q 040987 680 MSKLSISWSYLLHV 693 (762)
Q Consensus 680 ~~~~~~~~~~~~~~ 693 (762)
++.|.++.++..+.
T Consensus 375 l~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 375 LDSGHLLCTIPFPY 388 (425)
T ss_pred cccCceeeccCCCC
Confidence 99999998776664
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.55 E-value=2.8e-07 Score=59.10 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=37.0
Q ss_pred CeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 639 NVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 639 ~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
++++..+.+|.++|++++|+|++.+|++++.|+. |++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~--i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT--IRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSE--EEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCE--EEEEC
Confidence 4788999999999999999999999999999998 99997
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.50 E-value=1.1e-05 Score=82.70 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=125.3
Q ss_pred CceeeEEEeCCCCEEEEee---cC-ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 447 GLCRDIAFNHDGGLVALRA---EN-YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
..+..-.|+|+++.++..+ .. ..+.++++.+++....... ...-...+|+|||+.|+....+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-----------~g~~~~P~fspDG~~l~f~~~r--- 258 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-----------NGNNGAPAFSPDGSKLAFSSSR--- 258 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-----------CCccCCccCCCCCCEEEEEECC---
Confidence 4556778999998776553 22 4689999998876554442 3334567899999999988741
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-C--cEEEEEcccccccccccCCcee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-G--DFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.+.-.|.++|+.+..... +.. + .+.-+.-.|+|||+.++..+.. | .|.+++.+.+.......
T Consensus 259 ---dg~~~iy~~dl~~~~~~~-Lt~----~--~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~----- 323 (425)
T COG0823 259 ---DGSPDIYLMDLDGKNLPR-LTN----G--FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF----- 323 (425)
T ss_pred ---CCCccEEEEcCCCCccee-ccc----C--CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-----
Confidence 034467777777776333 221 1 2233478899999999987753 3 46677777665433221
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc--CCe--EEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA--ETV--ITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~--i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
....-....|||||++|+..+ +|. |.+.|+.++...+.+. +........|.++|+.+...+.-+
T Consensus 324 -------~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 324 -------SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred -------cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 122222789999999999876 555 7788887776555554 344466788999999988877655
No 327
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=4.2e-07 Score=84.29 Aligned_cols=151 Identities=11% Similarity=0.105 Sum_probs=115.8
Q ss_pred EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCe
Q 040987 297 AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGV 376 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 376 (762)
++.+.+..|-+-|++++.. +.+. -.+.|.++.|...++.+..|...|.
T Consensus 228 fs~G~sqqv~L~nvetg~~-------------------------------qsf~-sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-------------------------------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred ecccccceeEEEEeecccc-------------------------------cccc-cchhHHHHHhcccCCeeEecccCCc
Confidence 4445566788888877632 2233 4567888889888899999999999
Q ss_pred EEEEecCCCc-----eeccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceE---EEEEccCCCCCCCCCcccC
Q 040987 377 LVVWQLDTGK-----KKFLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEI---IRSISGIKLPCPLPEEYKG 447 (762)
Q Consensus 377 i~~wd~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~ 447 (762)
|...|++... +....-|+..|+++..-. ++++|++.+.+|.|++||++.-++ +.+..+|....
T Consensus 276 I~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~-------- 347 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS-------- 347 (425)
T ss_pred EEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc--------
Confidence 9999998752 345566888888888766 788999999999999999987665 88888886432
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
.-.-+.+.+....++++++|...++|.+..+..+.+++..
T Consensus 348 a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 348 AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 2223445667778888999999999999999887776543
No 328
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.48 E-value=3.2e-06 Score=75.47 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=113.5
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCceec-------------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-------------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
+..+.++.+ ..|+++..++.+......++.+.. +..+.++-.+-..+.-++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 455555543 345566555555554443333321 112222222223334567889999999999998
Q ss_pred cCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-----cCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 423 MPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-----ENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 423 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.+.-. ..+.+.... ..-.+.++...++.+.++. .-+..+.|++...+... ...+.
T Consensus 118 ~~~~~~~~~~i~~~~----------~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~---~~~~~------ 178 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIH----------SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI---PSKKA------ 178 (319)
T ss_pred chHHHhhhhhccccc----------ccccccceeecccEEecCCcceEeeccceeeeccccccccc---ccccc------
Confidence 87511 111111100 1112233333444444332 11335566654433221 11111
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSY 575 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~ 575 (762)
...|.+++-+|..+.++.++. ++|.+.+||.+....+..+ +..| +..|..+.|+| ++..|+++++
T Consensus 179 -~~~v~~l~~hp~qq~~v~cgt--------~dg~~~l~d~rn~~~p~S~----l~ah-k~~i~eV~FHpk~p~~Lft~se 244 (319)
T KOG4714|consen 179 -LDAVTALCSHPAQQHLVCCGT--------DDGIVGLWDARNVAMPVSL----LKAH-KAEIWEVHFHPKNPEHLFTCSE 244 (319)
T ss_pred -cccchhhhCCcccccEEEEec--------CCCeEEEEEcccccchHHH----HHHh-hhhhhheeccCCCchheeEecC
Confidence 234889999997665554442 8999999999987544333 5788 99999999999 5778999999
Q ss_pred CCcEEEEEccc
Q 040987 576 GGDFKVWICND 586 (762)
Q Consensus 576 dg~i~iwd~~~ 586 (762)
||.+..||..+
T Consensus 245 dGslw~wdas~ 255 (319)
T KOG4714|consen 245 DGSLWHWDAST 255 (319)
T ss_pred CCcEEEEcCCC
Confidence 99999999875
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.48 E-value=1.8e-05 Score=81.19 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=90.9
Q ss_pred eeeeeEEEEEEeecCCcceeEEEEecCCCeEEEEecCCcceeee-ecCcccccCCceeecCCCEEEEEeC-CEEEEEEcc
Q 040987 25 KLKAIKIHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSKMI-RGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTS 102 (762)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~-~~h~~~v~~~~~~s~dg~~la~~~~-~~i~iwd~~ 102 (762)
.....++.-+.+...+ ..+++.|.+.|.+.+|+-..++...+ .+....++++...|++..++|+|++ |.|.|+-++
T Consensus 29 ~~~~~~~v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 29 PGFFPARVKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred cccCcceEEEEEeecC--CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 3345566667777777 66999999999999999887766655 3234444445889999999999984 999999887
Q ss_pred cceE-----Eeee-cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 103 TGLQ-----ISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 103 ~~~~-----~~~l-~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
.+.+ +..+ +.|...|+|++|++++ .-+++|...|+|..-.+++
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-------~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNG-------MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccc-------cEEeecCCCceEEEEEech
Confidence 6431 2222 2488999999999999 7888999999998887776
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.46 E-value=0.00023 Score=75.83 Aligned_cols=274 Identities=12% Similarity=0.053 Sum_probs=148.9
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCCCe---EEEEeCC--CCCeEEEEe---------cCCcEEEEEcCCceEEEE
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPL---LYFTESP--DPSLSSISC---------ADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v---~~~~~s~--~~~~l~~~~---------~d~~i~i~d~~~~~~~~~ 431 (762)
..++.++.++.|+.+|.++|+.+........+ ..+.-+| .+..+++++ .++.+..+|..+|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57888888999999999999986443332221 0111111 124455543 357899999999998887
Q ss_pred EccCCC-CCCCCCcc---------cCce-eeEEEeCCCCEEEEeecCc------------------eEEEEEcCCCCcee
Q 040987 432 ISGIKL-PCPLPEEY---------KGLC-RDIAFNHDGGLVALRAENY------------------CIHFYSLLDDRGIS 482 (762)
Q Consensus 432 ~~~~~~-~~~~~~~~---------~~~v-~~~~~s~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~ 482 (762)
+..... +...+... ...+ ...++.+.+..+++++.++ .|.-+|..+++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 754321 11000000 0111 2356666667788887665 79999999999887
Q ss_pred eEEeecccccCCCCcc-eeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCce
Q 040987 483 EVQVCERNHQPGDDVT-VVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGI 558 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v 558 (762)
................ ..+..+. .-+|. .++.++ .++.+...|..+++.++..... .
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~---------~~G~l~ald~~tG~~~W~~~~~---------~ 331 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAP---------KNGFFYVLDRTTGKLISARPEV---------E 331 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEEC---------CCceEEEEECCCCcEeeEeEee---------c
Confidence 7654211000000000 0111111 11333 456665 6789999999999988776431 0
Q ss_pred EEEEEcCCCCeEEEE------------------eCCCcEEEEEcccccccccccCCceeeeeecccC----CCCe--EEE
Q 040987 559 SAVAFHPNRRAAVSS------------------SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK----KKAM--TAA 614 (762)
Q Consensus 559 ~~~~~spd~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i--~~~ 614 (762)
..++.+| ..++.+ ..+|.+.-.|..+++.+-..+ .....+ .... ..+
T Consensus 332 ~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~-------~~~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 332 QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR-------EGTIRDSWNIGFPHWGGSL 402 (488)
T ss_pred cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee-------CCccccccccCCcccCcce
Confidence 1123333 222221 134667777777776543331 100000 0011 122
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee--EEEEeCCCCEEEEEEcCC
Q 040987 615 AFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM--NMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 615 ~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~--~~~~s~dg~~l~s~~~d~ 671 (762)
. -.+..|++++ ||.++.+|.++|+.+-..+-. ..+. -+.|..+| .+..+..+|
T Consensus 403 ~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g-~~yv~~~~g 458 (488)
T cd00216 403 A--TAGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNG-KQYVGVMVG 458 (488)
T ss_pred E--ecCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCC-EEEEEEEec
Confidence 2 2456788877 999999999999998877542 3332 23344555 344444444
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=5.8e-06 Score=85.85 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=134.0
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
+.+.|++++ +++++.|+.+|.|++.+..... .....|...
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--------------------------------~~~~~~s~~------ 79 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--------------------------------KTNFDHSSS------ 79 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--------------------------------ccccccccc------
Confidence 456677775 6689999999999999975441 122223322
Q ss_pred ecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC-----CCeEEEEecCCcEEEEEcCCceEEEEEccCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD-----PSLSSISCADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
..+|.++++|+.||.|.+-.+.+.+.........++.+++++|| .+.+++|+..| +.++.-+-.........+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 56899999999999999999999988888888899999999998 56788888888 7776543222111112222
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
.+|.|.++.|. |+++|-++.+| |++||+.+++.+..++......++ ......+.|.++.++++--
T Consensus 159 --------~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~----e~fpphl~W~~~~~LVIGW 223 (846)
T KOG2066|consen 159 --------GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP----ELFPPHLHWQDEDRLVIGW 223 (846)
T ss_pred --------CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc----ccCCCceEecCCCeEEEec
Confidence 23789999987 66888888887 999999998877766544322111 3345677887776555433
Q ss_pred eeeccccCCCceeEEEEEEec
Q 040987 517 DIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 517 ~~~~~~~~~~~d~~i~iwd~~ 537 (762)
+ .+|++..++
T Consensus 224 ~-----------d~v~i~~I~ 233 (846)
T KOG2066|consen 224 G-----------DSVKICSIK 233 (846)
T ss_pred C-----------CeEEEEEEe
Confidence 2 478888887
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.42 E-value=0.00032 Score=71.37 Aligned_cols=118 Identities=13% Similarity=0.185 Sum_probs=84.1
Q ss_pred CCceEEEECCCCC-EEEE-----EeCC----eEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 236 KEPQVITISSSGK-YFGI-----RKQR----KLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 236 ~~v~~~~~spdg~-~la~-----~~~~----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
..+.++.||-... .+-+ +.+| .-.+|++...+.. ............|.+++++|+...|+.|+.||.|
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq--rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ--RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee--EEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence 3456777776333 2322 1223 2456777766544 3334445678899999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
.+||...+. ..+....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~~~--------------------------------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGV--------------------------------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCe--------------------------------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999986542 122233345688999999999999999999999998765
Q ss_pred ce
Q 040987 386 KK 387 (762)
Q Consensus 386 ~~ 387 (762)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 43
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.39 E-value=0.00019 Score=73.97 Aligned_cols=227 Identities=15% Similarity=0.148 Sum_probs=121.0
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
.... +.++|+|++++.+++|.-.|+.....+... .+.-...+|.+.+ . .|+-...++|+|+.--+.
T Consensus 34 ~p~~-ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-------~-yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 34 YPQS-LSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-------R-YAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp --SE-EEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-------E-EEEE-TTS-EEEEETTEE
T ss_pred CCee-EEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCc-------c-EEEEECCCeEEEEEcCcc
Confidence 3454 999999999999999999999954333322 2445667899966 3 335555788888632222
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
+..+.++....
T Consensus 100 ~~~k~i~~~~~--------------------------------------------------------------------- 110 (443)
T PF04053_consen 100 EVVKSIKLPFS--------------------------------------------------------------------- 110 (443)
T ss_dssp -TT-----SS----------------------------------------------------------------------
T ss_pred ccceEEcCCcc---------------------------------------------------------------------
Confidence 22222221111
Q ss_pred cCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 234 EMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
+..+-. |.+|+...++.|.+||+.+++.. . .-.-.+|..+.|+++++++|..+.+ .+.+++....
T Consensus 111 ----~~~If~---G~LL~~~~~~~i~~yDw~~~~~i-----~--~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 111 ----VEKIFG---GNLLGVKSSDFICFYDWETGKLI-----R--RIDVSAVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp ----EEEEE----SSSEEEEETTEEEEE-TTT--EE-----E--EESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred ----cceEEc---CcEEEEECCCCEEEEEhhHccee-----e--EEecCCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 111111 78888888889999999998743 2 2223348999999999999988755 5777765322
Q ss_pred ceeecccccccccccccccCCCCcccCCcc--ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDA--DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP 391 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~ 391 (762)
.... ...++ .....+..-...|.+.+|..| .++..... .++. +-.|+.-.+.
T Consensus 176 ~~~~---------------------~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~ 229 (443)
T PF04053_consen 176 AVAA---------------------IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA 229 (443)
T ss_dssp HHHH---------------------BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE
T ss_pred hccc---------------------ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE
Confidence 0000 00000 122333333678899999766 44444443 6665 5556665555
Q ss_pred CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 392 RIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
..+.++.-+.+.++.+.++....++.+..+.+.
T Consensus 230 ~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 230 HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 556677777888877788888888888877665
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.38 E-value=3e-05 Score=79.46 Aligned_cols=206 Identities=16% Similarity=0.069 Sum_probs=126.9
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec---C-CcEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA---D-NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
..+.+-|.+......+......+....|+|+++.++.... . ..+.++++++++....+... +.-.
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-----------g~~~ 241 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-----------GNNG 241 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-----------CccC
Confidence 3455555553333444455566778899999988766532 2 35899999987665554421 3346
Q ss_pred eEEEeCCCCEEEEee-cCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 451 DIAFNHDGGLVALRA-ENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
..+|+|||+.|+... .|| .|+++|+.+..... +... .+.-..-.|+|||++++..+.+ ++
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~----------~gi~~~Ps~spdG~~ivf~Sdr------~G 304 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNG----------FGINTSPSWSPDGSKIVFTSDR------GG 304 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccC----------CccccCccCCCCCCEEEEEeCC------CC
Confidence 678999999988775 334 57777887765322 2221 2223367899999999998731 12
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-Cc--EEEEEcccccccccccCCceeeeeec
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-GD--FKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
.-.|.+++.+......... .+ +.-....|+|||++++..+.. |. |.+.|+.++.....+
T Consensus 305 ~p~I~~~~~~g~~~~riT~----~~---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l----------- 366 (425)
T COG0823 305 RPQIYLYDLEGSQVTRLTF----SG---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL----------- 366 (425)
T ss_pred CcceEEECCCCCceeEeec----cC---CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-----------
Confidence 3367777777665422211 11 122278899999999988753 43 556666555432222
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
..........|.++|+.+...+
T Consensus 367 -t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 367 -TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred -cccccCCCCCcCCCCceEEEec
Confidence 1233444678889999887654
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.37 E-value=0.00017 Score=74.26 Aligned_cols=223 Identities=12% Similarity=0.111 Sum_probs=118.3
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
........+.++|+|++++++ .||...++.....+. ...+.-..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~-----------------------------------k~~G~g~~ 73 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN-----------------------------------KAFGSGLS 73 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE-----------------------------------EEEEE-SE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc-----------------------------------cccCceeE
Confidence 344567899999999999884 578888887422211 12234456
Q ss_pred EEEecCCCEEEEEecCCeEEEE-ecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVW-QLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~w-d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
.+|.+.+ .+++-...++|.++ +++... ......+..+..+-. |.+|...+. +.|.+||..+++.++.+..
T Consensus 74 ~vw~~~n-~yAv~~~~~~I~I~kn~~~~~-~k~i~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v--- 144 (443)
T PF04053_consen 74 FVWSSRN-RYAVLESSSTIKIYKNFKNEV-VKSIKLPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV--- 144 (443)
T ss_dssp EEE-TSS-EEEEE-TTS-EEEEETTEE-T-T-----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---
T ss_pred EEEecCc-cEEEEECCCeEEEEEcCcccc-ceEEcCCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec---
Confidence 7898855 56666667889996 332222 111222223444433 888877644 4899999999999999874
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC---------C--ceeeEEeecccccCCCCcceeEEEEEE
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD---------R--GISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------~--~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
..|..+.|++++++++..+.+ .+.+++.... - ....+... ...|.+.+|
T Consensus 145 ---------~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~----------~~~IkSg~W 204 (443)
T PF04053_consen 145 ---------SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI----------SERIKSGCW 204 (443)
T ss_dssp ----------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----------S--SEEEE
T ss_pred ---------CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe----------cceeEEEEE
Confidence 347899999999999998766 4777665432 0 11111110 345788888
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
..| .++..+ .. .++. +-.+.. ..+... ..++.-+.+.|..+.+.....|+.+..+.+..
T Consensus 205 ~~d--~fiYtT---------~~-~lkY--l~~Ge~-~~i~~l------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 205 VED--CFIYTT---------SN-HLKY--LVNGET-GIIAHL------DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ETT--EEEEE----------TT-EEEE--EETTEE-EEEEE-------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EcC--EEEEEc---------CC-eEEE--EEcCCc-ceEEEc------CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 776 333333 22 5555 333322 222211 44666677788777888888888888887754
Q ss_pred c
Q 040987 587 E 587 (762)
Q Consensus 587 ~ 587 (762)
.
T Consensus 264 ~ 264 (443)
T PF04053_consen 264 S 264 (443)
T ss_dssp H
T ss_pred H
Confidence 3
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.34 E-value=0.0012 Score=70.69 Aligned_cols=313 Identities=10% Similarity=0.029 Sum_probs=176.5
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCC--CCeEE----------EEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIG--SPLLY----------FTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~v~~----------~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+..++.++.++.|+-.|.++|+.+...... ..+.. +++ .+..+++++.++.+.-+|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 346777777888999999999875432221 11111 111 2356777888999999999999998876
Q ss_pred ccCCCCCCCCCcccCcee-eEEEeCCCCEEEEee------cCceEEEEEcCCCCceeeEEeeccccc----------CCC
Q 040987 433 SGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRA------ENYCIHFYSLLDDRGISEVQVCERNHQ----------PGD 495 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~----------~~~ 495 (762)
....... ...+. ...+. ++ .++++. .+|.|.-+|.++++.+........... ...
T Consensus 147 ~~~~~~~------~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 147 KNGDYKA------GYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred ccccccc------cccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 5321100 00111 11111 33 445443 268899999999998877654332100 000
Q ss_pred -----------CcceeE-EEEEEecCCCeEEEEeeec-cccCC--Cc----eeEEEEEEecCCCceeEEEEEeecCCC--
Q 040987 496 -----------DVTVVV-TLVALSQDGSLMSTVDIKL-AEEGI--GS----LVCLKFWVSGTQNKEFTLSTIVYEPHR-- 554 (762)
Q Consensus 496 -----------~~~~~v-~~~~~sp~g~~l~~~~~~~-~~~~~--~~----d~~i~iwd~~~~~~~~~~~~~~~~~h~-- 554 (762)
.....+ ..+++.|+..++..+.... +..+. .. ...|.-.|+++++....++. .+|.
T Consensus 219 ~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~---~~~D~w 295 (527)
T TIGR03075 219 GAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT---TPHDEW 295 (527)
T ss_pred ccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC---CCCCCc
Confidence 001111 2346677666666554221 11000 01 23788889999999888765 2331
Q ss_pred ----CCceEEEEEcCCCC---eEEEEeCCCcEEEEEccccccccccc---CCceeeeee---------------------
Q 040987 555 ----DAGISAVAFHPNRR---AAVSSSYGGDFKVWICNDELQQKDLQ---SSGWSCHAV--------------------- 603 (762)
Q Consensus 555 ----~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~--------------------- 603 (762)
.....-+.+..+|+ .++.+..+|.+++.|-.+++.+...+ ...|.....
T Consensus 296 D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~ 375 (527)
T TIGR03075 296 DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGK 375 (527)
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCC
Confidence 01112233334666 78889999999999999998753211 112211100
Q ss_pred ----cccCCCC--eEEEEEcCCCcEEEEEc-C---------------------------------CeEEEEeCCCCeEEE
Q 040987 604 ----GSYKKKA--MTAAAFSADGSVLAVAA-E---------------------------------TVITLWDPDRNVLVA 643 (762)
Q Consensus 604 ----~~~~~~~--i~~~~~s~dg~~la~~~-d---------------------------------~~i~iwd~~~~~~~~ 643 (762)
..+..+. -..++++|+..++.+.. + +.|.-+|+.+|+.+-
T Consensus 376 ~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W 455 (527)
T TIGR03075 376 PVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVW 455 (527)
T ss_pred eeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceee
Confidence 0000000 12356666655554332 2 457778888887776
Q ss_pred EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 644 VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
..+.......+. ..-.+.+++.++.||. ++.+|.+||+++|.+....
T Consensus 456 ~~~~~~p~~~~~-l~t~g~lvf~g~~~G~--l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 456 EHKEDFPLWGGV-LATAGDLVFYGTLEGY--FKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred EecCCCCCCCcc-eEECCcEEEEECCCCe--EEEEECCCCCEeEEEeCCC
Confidence 654322112222 2224556777777887 9999999999999988763
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00016 Score=76.10 Aligned_cols=236 Identities=11% Similarity=0.076 Sum_probs=147.0
Q ss_pred EEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-----eEEEEE
Q 040987 400 FTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-----CIHFYS 474 (762)
Q Consensus 400 ~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d 474 (762)
-++++.+..++.|+.+|.|.+++-. .+.++.+..+.. +.+..+....+..+|++.+.|+ .+++|+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~---------siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQ---------SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc-ceeeehheecch---------hhhhHhhcccCceEEEEEeecCCCCceEEEEec
Confidence 3467888999999999999888754 444466665551 2234444444446777777664 589999
Q ss_pred cCCCCceeeEEeecccc---c-CCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 475 LLDDRGISEVQVCERNH---Q-PGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
++..+.... +.+...| . .......++..++.+.+-+.+|+|- .+|.|..+.-+-.+....-.. ..
T Consensus 99 lek~~~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf---------~nG~V~~~~GDi~RDrgsr~~-~~ 167 (933)
T KOG2114|consen 99 LEKVDKNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF---------TNGLVICYKGDILRDRGSRQD-YS 167 (933)
T ss_pred ccccCCCCC-cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe---------cCcEEEEEcCcchhcccccee-ee
Confidence 975432110 1111000 0 0011256789999999999999998 889999886543222111111 11
Q ss_pred cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCe
Q 040987 551 EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETV 630 (762)
Q Consensus 551 ~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~ 630 (762)
... ..+|+.+++..+++.++....-..|.+|.+.+..... .....++....|-.|++....++++++..
T Consensus 168 ~~~-~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~----------~~ld~~G~~lnCss~~~~t~qfIca~~e~ 236 (933)
T KOG2114|consen 168 HRG-KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSL----------KVLDNNGISLNCSSFSDGTYQFICAGSEF 236 (933)
T ss_pred ccC-CCCceeeEEecCCceeEEEEecceeEEEEecCCCcce----------eeeccCCccceeeecCCCCccEEEecCce
Confidence 222 6799999999999884444445679999998444111 22345778888999987766688888888
Q ss_pred EEEEeCCCCeEEEEec-cccCceeEEEEeCCCCEEEEEEcC
Q 040987 631 ITLWDPDRNVLVAVIG-ETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 631 i~iwd~~~~~~~~~l~-~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
+.+|+......-..+. ||.... -|..-|..|+....-
T Consensus 237 l~fY~sd~~~~cfaf~~g~kk~~---~~~~~g~~L~v~~~~ 274 (933)
T KOG2114|consen 237 LYFYDSDGRGPCFAFEVGEKKEM---LVFSFGLLLCVTTDK 274 (933)
T ss_pred EEEEcCCCcceeeeecCCCeEEE---EEEecCEEEEEEccC
Confidence 9999998665555555 554332 233334455544333
No 338
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.5e-05 Score=72.79 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=149.9
Q ss_pred EEEEecCCCce-eccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE
Q 040987 377 LVVWQLDTGKK-KFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF 454 (762)
Q Consensus 377 i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 454 (762)
+++.+..+.+. ..++.+...|..++|||..+ ++..++.++.|+|.|+++......+..+ ..+++++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-----------~~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-----------NQIWSCCW 243 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-----------CCceeeee
Confidence 44444333333 25666777899999999887 6778889999999999998888877765 37799999
Q ss_pred eCCCC-EEEEeecCceEEEEEcCCCCcee-eEEeecccccCCCCcceeEEEE------EEecCCCeEEEEeeeccccCCC
Q 040987 455 NHDGG-LVALRAENYCIHFYSLLDDRGIS-EVQVCERNHQPGDDVTVVVTLV------ALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 455 s~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~------~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
.-|.. +|..|-.+|.|.+||++..+... ++..... ..+|..+ ...+-|.+++...
T Consensus 244 Dlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t--------~~pv~~i~~~~~n~~f~~gglLv~~l--------- 306 (463)
T KOG1645|consen 244 DLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVT--------INPVHKIAPVQPNKIFTSGGLLVFAL--------- 306 (463)
T ss_pred ccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhc--------cCcceeecccCccccccccceEEeee---------
Confidence 98765 45566688999999998754322 1111011 1223332 2333455555554
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEE-EEeCCCc------EEE-EEcccccccccccCCce
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAV-SSSYGGD------FKV-WICNDELQQKDLQSSGW 598 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~-~~~~dg~------i~i-wd~~~~~~~~~~~~~~~ 598 (762)
-.+.+|++........... ..+. .+...++.+.+..+.++ +.-.+.+ +-. -|-.+|.. .|
T Consensus 307 --t~l~f~ei~~s~~~~p~vl--ele~-pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~p-------Vc 374 (463)
T KOG1645|consen 307 --TVLQFYEIVFSAECLPCVL--ELEP-PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFP-------VC 374 (463)
T ss_pred --hhhhhhhhhccccCCCccc--ccCC-CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCce-------ee
Confidence 2466777654332111100 0122 44556666666444443 3322110 100 01111111 11
Q ss_pred eeeeeccc-CC---CCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEeC--CCCEEEEEEcC
Q 040987 599 SCHAVGSY-KK---KAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG--SSEYLVATSWG 670 (762)
Q Consensus 599 ~~~~~~~~-~~---~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~--dg~~l~s~~~d 670 (762)
.+.....+ .. ..-..+.-.++..+|+.-+ -+.+.+||..+++.++.+. -..+|.+++... .+.+|+.-.+|
T Consensus 375 ~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~ 453 (463)
T KOG1645|consen 375 GKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDD 453 (463)
T ss_pred eecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc-cCcceeecceeecCCcchhhheecc
Confidence 11110000 00 0011223345667766554 5889999999999999986 447888887665 35678888777
Q ss_pred CCCeEEEEECC
Q 040987 671 SKPQLSVWNMS 681 (762)
Q Consensus 671 ~~~~v~vwd~~ 681 (762)
. ++||..+
T Consensus 454 ~---v~Iyk~e 461 (463)
T KOG1645|consen 454 R---VHIYKNE 461 (463)
T ss_pred e---EEEEecC
Confidence 6 8888654
No 339
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.28 E-value=0.011 Score=64.06 Aligned_cols=535 Identities=14% Similarity=0.117 Sum_probs=256.8
Q ss_pred CCCEEEEEeC-C--EEEEEEcccceEEeeecC--------CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 84 DVKRLLVCTS-N--TVSIFSTSTGLQISSLEG--------HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 84 dg~~la~~~~-~--~i~iwd~~~~~~~~~l~~--------h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
+..+|..+.+ . .+.-||.+..+.+..-.+ ....=.-+...|.+ +.+.-.-.+|.+++-.+.+
T Consensus 72 ~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~~v~dr~gr~s~~g~~~~VDp~~-------R~Igl~~yqgl~~vIp~d~ 144 (1096)
T KOG1897|consen 72 DKDYLFVATDSYRYFILEWDEESIQVVTRAHGDVSDRSGRPSDNGQILLVDPKG-------RVIGLHLYQGLFKVIPIDS 144 (1096)
T ss_pred CcceEEEEECcceEEEEEEccccceEEEEecccccccccccCCCceEEEECCCC-------cEEEEEeecCeEEEEEecc
Confidence 4468888884 3 566678654443322211 11222345678888 4556667788888877766
Q ss_pred ------cceEEEEEec--c-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCC
Q 040987 153 ------PELLKTIDVK--F-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTE 223 (762)
Q Consensus 153 ------~~~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~ 223 (762)
+..+.-+... . .+..++|-. +...|. +++... .+.+..++.|++.-
T Consensus 145 ~~sht~~s~l~~fn~rfdel~v~Di~fly--------~~s~pt-~~vly~----------------Ds~~~Hv~~yelnl 199 (1096)
T KOG1897|consen 145 DESHTGGSLLKAFNVRFDELNVYDIKFLY--------GCSDPT-LAVLYK----------------DSDGRHVKTYELNL 199 (1096)
T ss_pred cccccCcccccccccccCcceEEEEEEEc--------CCCCCc-eEEEEE----------------cCCCcEEEEEEecc
Confidence 3333333222 2 455565521 111111 444432 23566777776654
Q ss_pred cccc--cee---eeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEE
Q 040987 224 SRLA--GGV---TLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAA 298 (762)
Q Consensus 224 ~~~~--~~~---~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 298 (762)
+..- ... ...+.....-..-+|.|-.|+.+....++... .... .+.........-+..-....++.+.+.
T Consensus 200 ~~ke~~~~~w~~~v~~~a~~li~VP~~~gGvlV~ge~~I~Y~~~---~~~~--ai~p~~~~~~t~~~~~~v~~~~~~yLl 274 (1096)
T KOG1897|consen 200 RDKEFVKGPWSNNVDNGASMLIPVPSPIGGVLVIGEEFIVYMSG---DNFV--AIAPLTAEQSTIVCYGRVDLQGSRYLL 274 (1096)
T ss_pred chhhccccccccccccCCceeeecCCCCceEEEEeeeEEEEeeC---Ccee--EecccccCCceEEEcccccCCccEEEE
Confidence 4211 111 12222233333334555566665544333332 1111 000000111112223345668888888
Q ss_pred eecCCeEEEEecc-CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 299 GDVTGRILIWRGF-GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 299 ~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
+..+|.+...-+. +++..... ......-+...-..++..-++| .+++|+.-|.=
T Consensus 275 ~d~~G~Lf~l~l~~~~e~~s~~------------------------~lkve~lge~siassi~~L~ng-~lFvGS~~gdS 329 (1096)
T KOG1897|consen 275 GDEDGMLFKLLLSHTGETVSGL------------------------DLKVEYLGETSIASSINYLDNG-VLFVGSRFGDS 329 (1096)
T ss_pred ecCCCcEEEEEeecccccccce------------------------EEEEEecCCcchhhhhhcccCc-eEEEeccCCce
Confidence 9999988776654 33322210 0112223334445566666666 78888877665
Q ss_pred EEEecCCCcee-------ccCCCCCCeEEEEeCC-C---CCeEEEEe---cCCcEEEEEcCCceE-E--EEEccCCCCCC
Q 040987 378 VVWQLDTGKKK-------FLPRIGSPLLYFTESP-D---PSLSSISC---ADNQVHLLKMPSMEI-I--RSISGIKLPCP 440 (762)
Q Consensus 378 ~~wd~~~~~~~-------~~~~~~~~v~~~~~s~-~---~~~l~~~~---~d~~i~i~d~~~~~~-~--~~~~~~~~~~~ 440 (762)
.+-.+.+.... .....-+||..++.-. + +..+++++ .||++++..-.-+-. . -.+.|.
T Consensus 330 qLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gi----- 404 (1096)
T KOG1897|consen 330 QLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGI----- 404 (1096)
T ss_pred eeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCc-----
Confidence 55555432221 1112224677766532 1 23455443 378888876432211 1 122221
Q ss_pred CCCcccCceeeEE--EeC--CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEE
Q 040987 441 LPEEYKGLCRDIA--FNH--DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMST 515 (762)
Q Consensus 441 ~~~~~~~~v~~~~--~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~ 515 (762)
..+..+. +++ |. +|+.+-- +.-++..+... ...... .+. ......+..|- .|..|+-
T Consensus 405 ------kg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e--~ee~~~--~gf------~~~~~Tif~S~i~g~~lvQ 466 (1096)
T KOG1897|consen 405 ------KGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEE--VEETED--PGF------STDEQTIFCSTINGNQLVQ 466 (1096)
T ss_pred ------cceeEeeccccccCCc-EEEEEec-cceEEEEEccc--eEEecc--ccc------cccCceEEEEccCCceEEE
Confidence 2344444 333 33 5554433 33455555432 111100 000 11122222222 2222222
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccC
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 595 (762)
. ....|++++-......+.- .+.++....+-+...++.++.++.+...++..+......+
T Consensus 467 v----------Ts~~iRl~ss~~~~~~W~~---------p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~- 526 (1096)
T KOG1897|consen 467 V----------TSNSIRLVSSAGLRSEWRP---------PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH- 526 (1096)
T ss_pred E----------ecccEEEEcchhhhhcccC---------CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee-
Confidence 2 1246777776622222211 3455555555666677777777777777776665322221
Q ss_pred CceeeeeecccCCCCeEEEEEcCCC------cEEEEEc--CCeEEEEeCCCCeEEEE--ecc--ccCceeEEEEeCCCCE
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADG------SVLAVAA--ETVITLWDPDRNVLVAV--IGE--TLTPIMNMSFVGSSEY 663 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg------~~la~~~--d~~i~iwd~~~~~~~~~--l~~--~~~~v~~~~~s~dg~~ 663 (762)
..-...|.|+.++|-| +++++|. +-.+.+.-..+...+.. +.+ -...|.-..|-.|..+
T Consensus 527 ---------~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 527 ---------KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHY 597 (1096)
T ss_pred ---------heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceE
Confidence 1235789999999742 3788886 44444444444433322 222 1223556677778899
Q ss_pred EEEEEcCCCCeEEEE--ECCCCceeeEEEEeecceeeeeeecCCCccccccCCccccCCCCCCCCCccccccCCcccCCC
Q 040987 664 LVATSWGSKPQLSVW--NMSKLSISWSYLLHVEGQFGYASIYGELPEFKLKRNQDLWAPSVPSEKPWETIFSGSSHNLPP 741 (762)
Q Consensus 664 l~s~~~d~~~~v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 741 (762)
|.++..||. +.-+ |+.+|.+.-.-..+.. ..+.. +-.|+.+..+... ..+.|||.-......+++-|
T Consensus 598 LlvalgdG~--l~~fv~d~~tg~lsd~Kk~~lG----t~P~~--Lr~f~sk~~t~vf---a~sdrP~viY~~n~kLv~sp 666 (1096)
T KOG1897|consen 598 LLVALGDGA--LLYFVLDINTGQLSDRKKVTLG----TQPIS--LRTFSSKSRTAVF---ALSDRPTVIYSSNGKLVYSP 666 (1096)
T ss_pred EEEEcCCce--EEEEEEEcccceEccccccccC----CCCcE--EEEEeeCCceEEE---EeCCCCEEEEecCCcEEEec
Confidence 999999997 5544 6666654332222221 11100 1122222222222 23468888777777777766
Q ss_pred ch
Q 040987 742 LT 743 (762)
Q Consensus 742 ~~ 743 (762)
++
T Consensus 667 ls 668 (1096)
T KOG1897|consen 667 LS 668 (1096)
T ss_pred cc
Confidence 64
No 340
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.27 E-value=0.012 Score=63.80 Aligned_cols=446 Identities=15% Similarity=0.132 Sum_probs=226.0
Q ss_pred ceeecCCCEEEEEe----------CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEE
Q 040987 79 PAFSNDVKRLLVCT----------SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYW 148 (762)
Q Consensus 79 ~~~s~dg~~la~~~----------~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vW 148 (762)
..|+.+-+.++... .+.|++++-+ ..+..... .+.++....+.+. ..++.++.++.+..-
T Consensus 445 ~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~-------sqVvvA~~~~~l~y~ 514 (1096)
T KOG1897|consen 445 PGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRP-PGKITIGVVSANA-------SQVVVAGGGLALFYL 514 (1096)
T ss_pred ccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccC-CCceEEEEEeecc-------eEEEEecCccEEEEE
Confidence 44555555555544 3456666643 23333433 4456666666665 466677777888888
Q ss_pred eCCCcceEEEEEec---cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE-ecCCc
Q 040987 149 DFSVPELLKTIDVK---FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC-NLTES 224 (762)
Q Consensus 149 d~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw-d~~~~ 224 (762)
++..+. ++....+ ..+.++.+ ...+...+ ...+++. |..+..+.+. -..+.
T Consensus 515 ~i~~~~-l~e~~~~~~e~evaCLDi---sp~~d~~~--~s~~~aV-------------------G~Ws~~~~~l~~~pd~ 569 (1096)
T KOG1897|consen 515 EIEDGG-LREVSHKEFEYEVACLDI---SPLGDAPN--KSRLLAV-------------------GLWSDISMILTFLPDL 569 (1096)
T ss_pred Eeeccc-eeeeeeheecceeEEEec---ccCCCCCC--cceEEEE-------------------EeecceEEEEEECCCc
Confidence 887766 3222222 25555544 11111111 1112322 2222222221 11122
Q ss_pred cccceeeecc---CCCceEEEECCCCCEEEEE-eCCeEEEEEcc--CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEE
Q 040987 225 RLAGGVTLAE---MKEPQVITISSSGKYFGIR-KQRKLLIWKVP--DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAA 298 (762)
Q Consensus 225 ~~~~~~~~~~---~~~v~~~~~spdg~~la~~-~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 298 (762)
..+......- +..+...+|-.|..+|.++ .||.+.-+.+. ++... ..++... ...++.--.|+..++.-+.
T Consensus 570 ~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls--d~Kk~~l-Gt~P~~Lr~f~sk~~t~vf 646 (1096)
T KOG1897|consen 570 ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS--DRKKVTL-GTQPISLRTFSSKSRTAVF 646 (1096)
T ss_pred ceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEc--ccccccc-CCCCcEEEEEeeCCceEEE
Confidence 2111111111 3344555666677787654 78888766544 44332 2222222 2345555567665554444
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee-EEEEecC--CCEEEEEecCC
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS-VLIFSSD--GAYLYSGGKEG 375 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~~--g~~l~s~~~dg 375 (762)
+..|.-..+|.....-.+.. +. - ..+. -+.|+.+ ...++++.. +
T Consensus 647 a~sdrP~viY~~n~kLv~sp------------------------------ls-~-kev~~~c~f~s~a~~d~l~~~~~-~ 693 (1096)
T KOG1897|consen 647 ALSDRPTVIYSSNGKLVYSP------------------------------LS-L-KEVNHMCPFNSDAYPDSLASANG-G 693 (1096)
T ss_pred EeCCCCEEEEecCCcEEEec------------------------------cc-h-HHhhhhcccccccCCceEEEecC-C
Confidence 44455555555432211110 00 0 0011 1123222 233555543 5
Q ss_pred eEEEEecCCCcee--ccCCCCCCeEEEEeCCCCCeEEEEec-----------C---CcEEEEEcCCceEEEEEccCCCCC
Q 040987 376 VLVVWQLDTGKKK--FLPRIGSPLLYFTESPDPSLSSISCA-----------D---NQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 376 ~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d---~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
.+.+..++.-+.. ...........+++.+....+.+.+. . ..++++|.++.+.+...+-...+.
T Consensus 694 ~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~ 773 (1096)
T KOG1897|consen 694 ALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET 773 (1096)
T ss_pred ceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce
Confidence 5666655543332 12334455666777664444443321 1 136777777766555433222110
Q ss_pred CCCCcccCceeeEEEeCC-CCEEEEee----------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 440 PLPEEYKGLCRDIAFNHD-GGLVALRA----------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
--.+.++.|..| +.++++|+ ..|.|.+|.......+.......- .+.+.++.. -
T Consensus 774 ------~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v--------~Gav~aL~~-f 838 (1096)
T KOG1897|consen 774 ------ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV--------KGAVYALVE-F 838 (1096)
T ss_pred ------eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee--------ccceeehhh-h
Confidence 024455568777 67777775 247788888776433332221110 233333322 2
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+|+++|.-+ ..|++|+..+.+....- ..+ ...+..+...-.|..++.|..-+.+.+...+..+
T Consensus 839 ngkllA~In-----------~~vrLye~t~~~eLr~e-----~~~-~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 839 NGKLLAGIN-----------QSVRLYEWTTERELRIE-----CNI-SNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CCeEEEecC-----------cEEEEEEccccceehhh-----hcc-cCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 677877765 58999999888544332 344 6678888888889999999877777765554333
Q ss_pred --ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 040987 589 --QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637 (762)
Q Consensus 589 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~ 637 (762)
....- ...+..+.+++.+-.+..++.+-.+|.+.+-..+
T Consensus 902 g~f~evA----------rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 902 GNFEEVA----------RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred CceEEee----------hhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 22211 2345678888888777666655557777776544
No 341
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.7e-05 Score=71.69 Aligned_cols=269 Identities=14% Similarity=0.087 Sum_probs=150.2
Q ss_pred EEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeeccccc
Q 040987 96 VSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLR 175 (762)
Q Consensus 96 i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (762)
|+..+..+-+.+.-+.+|...|..++|||..+ .++..++.+.+|+|.|+.+..++..+..+..+++++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~------GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~w----- 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNE------GLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCW----- 243 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCcccc------ceeeeeccCceEEEEecccceeeeheeccCCceeeee-----
Confidence 55555555555556678889999999999985 4677899999999999999999999999999999966
Q ss_pred CCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec--cCCCceEEEE------CCCC
Q 040987 176 QPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA--EMKEPQVITI------SSSG 247 (762)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~------spdg 247 (762)
.-|.+. .| +.|..+|.|.+||++..+.......+ ...+|..++. .+-|
T Consensus 244 ---Dlde~h--~I-------------------YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g 299 (463)
T KOG1645|consen 244 ---DLDERH--VI-------------------YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG 299 (463)
T ss_pred ---ccCCcc--ee-------------------EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc
Confidence 222211 11 67889999999999876655322222 2233443333 3334
Q ss_pred CEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEE-EeecCC------eEEEE-eccCCceeecc
Q 040987 248 KYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA-AGDVTG------RILIW-RGFGDRTFATN 319 (762)
Q Consensus 248 ~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~dg------~v~vw-~~~~~~~~~~~ 319 (762)
.+|++. --.+..|++.....- .......+..+...++++.+-.+.++ +.-.+. .+-.. |...+..+-
T Consensus 300 glLv~~-lt~l~f~ei~~s~~~--~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc-- 374 (463)
T KOG1645|consen 300 GLLVFA-LTVLQFYEIVFSAEC--LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVC-- 374 (463)
T ss_pred ceEEee-ehhhhhhhhhccccC--CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceee--
Confidence 444432 234556665533321 11111223345566666766444444 332210 01110 000010000
Q ss_pred cccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEE-EecCCeEEEEecCCCceeccCCCCCCeE
Q 040987 320 DNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYS-GGKEGVLVVWQLDTGKKKFLPRIGSPLL 398 (762)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~v~ 398 (762)
..+.... +. ..-+-++.. .+.=.++.++++. ++..+++.+||..+.+.........++.
T Consensus 375 ------------~~r~~~~----Gs--~~~kl~t~~--ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~ 434 (463)
T KOG1645|consen 375 ------------GKRRTYF----GS--KQTKLSTTQ--AIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVL 434 (463)
T ss_pred ------------eeccccc----CC--ccccccccc--ceeccccccEEEEecCCcceeEEeccchhheeeecccCccee
Confidence 0000000 00 000001111 1111344555554 4445789999999999887777778888
Q ss_pred EEEeCC-CCCeEEEEecCCcEEEEEcC
Q 040987 399 YFTESP-DPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 399 ~~~~s~-~~~~l~~~~~d~~i~i~d~~ 424 (762)
.++... ++.-++..-.|..++||..+
T Consensus 435 Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 435 DICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ecceeecCCcchhhheecceEEEEecC
Confidence 887643 44434444467778887654
No 342
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00012 Score=77.09 Aligned_cols=215 Identities=15% Similarity=0.159 Sum_probs=139.9
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
-++++.+..++.|+.+|.|.+++-.- +.+..++.... ..+..+-...+..+|++.+. +..+.-..+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~---------siv~~L~~~~~~~~L~sv~E----d~~~np~ll 94 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQ---------SIVQFLYILNKQNFLFSVGE----DEQGNPVLL 94 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-eeeehheecch---------hhhhHhhcccCceEEEEEee----cCCCCceEE
Confidence 46788889999999999998887532 22233333221 12344444444467777663 221122279
Q ss_pred EEEEecCCCc---eeEEEEEee----cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 532 KFWVSGTQNK---EFTLSTIVY----EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 532 ~iwd~~~~~~---~~~~~~~~~----~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
+||+++..+. +..+..... .+....++.+++.|.+-+.+|+|-.+|.|..+.=+--+.... .....
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-------r~~~~ 167 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-------RQDYS 167 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-------ceeee
Confidence 9999875422 112211111 121156789999999999999999999998874322111111 00112
Q ss_pred ccCCCCeEEEEEcCCCcE-EEEEcCCeEEEEeCCCCe-EEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 605 SYKKKAMTAAAFSADGSV-LAVAAETVITLWDPDRNV-LVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~-la~~~d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.....+|+.+++-.|++. ++++.-..|.+|.+.... ....+..|..++.+..|++....++.++... |.+|+.+.
T Consensus 168 ~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~---l~fY~sd~ 244 (933)
T KOG2114|consen 168 HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF---LYFYDSDG 244 (933)
T ss_pred ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce---EEEEcCCC
Confidence 234789999999999987 555567889999998544 2455777878899999998666577777766 99999998
Q ss_pred CceeeEEE
Q 040987 683 LSISWSYL 690 (762)
Q Consensus 683 ~~~~~~~~ 690 (762)
..+.+.|.
T Consensus 245 ~~~cfaf~ 252 (933)
T KOG2114|consen 245 RGPCFAFE 252 (933)
T ss_pred cceeeeec
Confidence 88888887
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=4.9e-05 Score=79.26 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=129.4
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
.+.+++++ +++++.|+.+|.+++++..... ..... | ... .-+|.++++++ .
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~----~------s~~------~~~Gey~asCS---------~ 91 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFD----H------SSS------ILEGEYVASCS---------D 91 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc--ccccc----c------ccc------ccCCceEEEec---------C
Confidence 44555555 5789999999999999976432 11100 0 111 56899999999 8
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-----CCeEEEEeCCCcEEEEEcccccccccccCCceeeee
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-----RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
||+|.|..+.+.+......- ..++.+++++|| .+.+++|+..| +.++.-+=-..... .
T Consensus 92 DGkv~I~sl~~~~~~~~~df-------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~---------v 154 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDF-------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS---------V 154 (846)
T ss_pred CCcEEEeeccCCccceeEec-------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc---------e
Confidence 99999999998887665532 568999999998 56899999888 76664321111000 1
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCc------eeEEEEeCCCCEEEEEEcCCCCeEE
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTP------IMNMSFVGSSEYLVATSWGSKPQLS 676 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~------v~~~~~s~dg~~l~s~~~d~~~~v~ 676 (762)
......++|.++.| .|.++|-++|-.|+|||+.+++.+..++..... -..+.|.++. .|+.|=.|. |+
T Consensus 155 ~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~---v~ 228 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDS---VK 228 (846)
T ss_pred eeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCe---EE
Confidence 23456789999999 577999999888999999999888877544333 3457787764 566665555 88
Q ss_pred EEECC
Q 040987 677 VWNMS 681 (762)
Q Consensus 677 vwd~~ 681 (762)
|..+.
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 88887
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.20 E-value=0.0014 Score=66.83 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=69.8
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCC
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
.-.+|++...+.. .... .--+. ...+.+.+++|+...++.|+.||.|.+||...+...... ..-
T Consensus 237 d~ciYE~~r~klq-rvsv-tsipL-~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k-------------a~~ 300 (545)
T PF11768_consen 237 DSCIYECSRNKLQ-RVSV-TSIPL-PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK-------------AEF 300 (545)
T ss_pred EEEEEEeecCcee-EEEE-EEEec-CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee-------------ecc
Confidence 3456777655432 2211 11245 778999999999999999999999999998766433221 234
Q ss_pred CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 610 AMTAAAFSADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 610 ~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
.++.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 301 ~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 301 IPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 567899999999999999 699999998643
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00027 Score=72.85 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=92.2
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC--CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR--IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
|...|.--+++..+++++.|+.-|.+++|+-..++...... ....+.....+++..++|+|+..|.|.++.+....+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44456666777889999999999999999988887755444 3445666778999999999999999999988763221
Q ss_pred EEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC
Q 040987 430 RSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 430 ~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 477 (762)
... ..+ ....|...|++++|++++..+.+|...|.|.+-.+..
T Consensus 112 ~~~~~t~-----~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTP-----CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeecc-----ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111 101 0111457999999999999999999999999888876
No 346
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.17 E-value=3e-05 Score=81.79 Aligned_cols=183 Identities=18% Similarity=0.218 Sum_probs=132.1
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCCCC-CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS-PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP 442 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (762)
++..++.|+....+..+|+.+.+......... .+.-+ -.+++.+.+|...|+|.+-|.++.+.++++..|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs------ 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS------ 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccc------
Confidence 44567788877888999999888765544443 34434 3578899999999999999999999999999998
Q ss_pred CcccCceeeEEEeCCCCEEEEeec---------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC-CCe
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAE---------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD-GSL 512 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~ 512 (762)
+.+.+ |+-.|+.|++++. |..|++||++..+.+..+... ....-+.|.|. ...
T Consensus 218 ----~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-----------~~P~flrf~Psl~t~ 280 (1118)
T KOG1275|consen 218 ----GSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-----------YGPQFLRFHPSLTTR 280 (1118)
T ss_pred ----cceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-----------cCchhhhhcccccce
Confidence 55544 5556888888874 456899999987766655442 12345667775 345
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCce-eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKE-FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
+++.+ ..|...+-|..+.... ..... ..+. ...+..+.+|++++.+|.+..+|.|.+|.
T Consensus 281 ~~V~S---------~sGq~q~vd~~~lsNP~~~~~~--v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 281 LAVTS---------QSGQFQFVDTATLSNPPAGVKM--VNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEEe---------cccceeeccccccCCCccceeE--EccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 56665 6678888884433222 11111 1333 55699999999999999999999999998
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.13 E-value=0.00082 Score=63.13 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=111.2
Q ss_pred ccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 389 FLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.+++....+..++|.|+.+ ++++....+.|..++.. |+.++.+.-... +....+++..++.++++.-.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~---------~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF---------GDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------SSEEEEEE-STTEEEEEETTT
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC---------CCceeEEEECCCEEEEEEcCC
Confidence 3455666799999999865 55555567788888864 788877653321 466889999888777776668
Q ss_pred ceEEEEEcCCCCce---eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC--C-Cc
Q 040987 468 YCIHFYSLLDDRGI---SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT--Q-NK 541 (762)
Q Consensus 468 g~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~--~-~~ 541 (762)
+.+.++++...... .......-+. .......+..++|+|.++.|.++- +..-..+|.+.. . ..
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~--~~~~N~G~EGla~D~~~~~L~v~k---------E~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGF--PNKGNKGFEGLAYDPKTNRLFVAK---------ERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE-----S---SS--EEEEEETTTTEEEEEE---------ESSSEEEEEEESTT-SS-
T ss_pred CcEEEEEEeccccccchhhceEEeccc--ccCCCcceEEEEEcCCCCEEEEEe---------CCCChhhEEEccccCccc
Confidence 99999998543321 1111111111 011245689999999988777775 333445555554 1 11
Q ss_pred eeEEEEE--e-ecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc
Q 040987 542 EFTLSTI--V-YEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS 617 (762)
Q Consensus 542 ~~~~~~~--~-~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 617 (762)
....... . .... ...+.+++++|. +.+++.+..+..+..+|. .++.+....... ........-...-.|+|.
T Consensus 155 ~~~~~~~~~~~~~~~-~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~--g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLF-VRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDR--GFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp -EEEE-HHHH-HT---SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-ST--TGGG-SS---SEEEEEE-
T ss_pred eeeccccccccccce-eccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCC--cccCcccccCCccEEEEC
Confidence 1111100 0 0112 446788999996 456666666777888884 444433221000 000000011345689999
Q ss_pred CCCcEEEEEcCCeEEEE
Q 040987 618 ADGSVLAVAAETVITLW 634 (762)
Q Consensus 618 ~dg~~la~~~d~~i~iw 634 (762)
++|++.+++--+..+++
T Consensus 231 ~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TT--EEEEETTTEEEEE
T ss_pred CCCCEEEEcCCceEEEe
Confidence 99988777765555544
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.11 E-value=0.013 Score=62.75 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=95.5
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCCC--eEEEEeCC---CCCeEEEEec------CCcEEEEEcCCceEEEEEcc
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP--LLYFTESP---DPSLSSISCA------DNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~---~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~ 434 (762)
..++.++.++.+...|.++|+.......... -..+.-+| ++ .++++.. +|.|..+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4677788899999999999998643322110 01111122 34 4444432 68899999999999887654
Q ss_pred CCCCCC----------CCC-----------cccCce-eeEEEeCCCCEEEEeecC-----c-----------eEEEEEcC
Q 040987 435 IKLPCP----------LPE-----------EYKGLC-RDIAFNHDGGLVALRAEN-----Y-----------CIHFYSLL 476 (762)
Q Consensus 435 ~~~~~~----------~~~-----------~~~~~v-~~~~~s~~~~~l~~~~~d-----g-----------~i~i~d~~ 476 (762)
...... ... ...+.+ ..+++.|...++..+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 322100 000 001122 235777766677666522 1 67778889
Q ss_pred CCCceeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCce
Q 040987 477 DDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE 542 (762)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 542 (762)
+++....++......-..+. .....-+.+..+|+ .++.+. .+|.+.+.|..+++.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~-~~~p~l~d~~~~G~~~~~v~~~~---------K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDG-VNEMILFDLKKDGKPRKLLAHAD---------RNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccC-CCCcEEEEeccCCcEEEEEEEeC---------CCceEEEEECCCCcee
Confidence 99887776654322111110 11122223335666 666666 8899999999998764
No 349
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0086 Score=61.60 Aligned_cols=275 Identities=12% Similarity=0.034 Sum_probs=173.2
Q ss_pred EEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC-cEEEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEE
Q 040987 377 LVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN-QVHLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAF 454 (762)
Q Consensus 377 i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~ 454 (762)
+.+++..+...............+...+++..+++..... .+...+.. ....... .... .....+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~----------~~p~~i~v 81 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGG----------VYPAGVAV 81 (381)
T ss_pred eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCC----------ccccceee
Confidence 4444444444332222223556677888886655544322 34444443 2111111 1100 23357888
Q ss_pred eCCCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 455 NHDGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 455 s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
++++..+... ..++.|.+.|..+.+........ .....++++|+++.+.++... ..++.+.+
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-----------~~P~~~~~~~~~~~vYV~n~~------~~~~~vsv 144 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-----------LGPVGLAVDPDGKYVYVANAG------NGNNTVSV 144 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-----------cCCceEEECCCCCEEEEEecc------cCCceEEE
Confidence 8888855544 44588999998777666655542 246789999999988888731 02578888
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCceeeeeecccCCCCeE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT 612 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 612 (762)
.|..+........ .+. .+ ..++++|+|..++... .++.+.+.|........ -. ............
T Consensus 145 id~~t~~~~~~~~----vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~------~~~~~~~~~~P~ 210 (381)
T COG3391 145 IDAATNKVTATIP----VGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS------VGSLVGVGTGPA 210 (381)
T ss_pred EeCCCCeEEEEEe----cCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc------cccccccCCCCc
Confidence 8888887766532 222 23 7899999999666555 67899999976655442 10 000011234456
Q ss_pred EEEEcCCCcEEEEEc--C--CeEEEEeCCCCeEEEE-eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 613 AAAFSADGSVLAVAA--E--TVITLWDPDRNVLVAV-IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 613 ~~~~s~dg~~la~~~--d--~~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
.+.++|+|.++.+.. + +.+...|..++..... .......-..+.++|+|+.+.+....+ +.+.+-|..+..+..
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~-~~V~vid~~~~~v~~ 289 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG-GTVSVIDGATDRVVK 289 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC-CeEEEEeCCCCceee
Confidence 789999999877664 3 6999999999877765 221111356789999999999985552 249999999888877
Q ss_pred EEEEeec
Q 040987 688 SYLLHVE 694 (762)
Q Consensus 688 ~~~~~~~ 694 (762)
.+.....
T Consensus 290 ~~~~~~~ 296 (381)
T COG3391 290 TGPTGNE 296 (381)
T ss_pred eeccccc
Confidence 6655544
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.10 E-value=0.0034 Score=61.78 Aligned_cols=250 Identities=12% Similarity=0.060 Sum_probs=136.5
Q ss_pred CCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee
Q 040987 404 PDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 482 (762)
..++.|+.|+.+| +.+++... ....+.... ..|..+...|+-+.+++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~------------~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL------------SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec------------ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 4578899998887 99999833 333322221 3588899999877766664 4899999987654443
Q ss_pred eEEeec--cc--ccCCCCcceeEEEEE---EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--EEEEEeecCC
Q 040987 483 EVQVCE--RN--HQPGDDVTVVVTLVA---LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF--TLSTIVYEPH 553 (762)
Q Consensus 483 ~~~~~~--~~--~~~~~~~~~~v~~~~---~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~h 553 (762)
...... .. ....-.....+...+ -......|+++. ...|.+|......... .+.... -
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~----------kk~i~i~~~~~~~~~f~~~~ke~~---l 137 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV----------KKKILIYEWNDPRNSFSKLLKEIS---L 137 (275)
T ss_pred ccccccccccccccccccccCCeeEEeeccccccceEEEEEE----------CCEEEEEEEECCcccccceeEEEE---c
Confidence 211000 00 000000022233333 223344556553 3488888887642221 222211 1
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee-eeeecccCCCCeEEEEEcCCCcEEEEEcCCeEE
Q 040987 554 RDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS-CHAVGSYKKKAMTAAAFSADGSVLAVAAETVIT 632 (762)
Q Consensus 554 ~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~ 632 (762)
...+.+++|. ++.++.+..+ ...+.|+.++..........-. ..........++..+.. +++.+|++- |..-.
T Consensus 138 -p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~~g~ 211 (275)
T PF00780_consen 138 -PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DNIGV 211 (275)
T ss_pred -CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cceEE
Confidence 4578899998 5577777654 4888999876554433100000 00000011223333343 345666654 33333
Q ss_pred EEeCCCCeEEE--EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 633 LWDPDRNVLVA--VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 633 iwd~~~~~~~~--~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
+.|.. |+..+ .+. -.....++++.. .+|+..+.++ |.||++.+++++..+..+.
T Consensus 212 fv~~~-G~~~r~~~i~-W~~~p~~~~~~~--pyli~~~~~~---iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 212 FVNKN-GEPSRKSTIQ-WSSAPQSVAYSS--PYLIAFSSNS---IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEcCC-CCcCcccEEE-cCCchhEEEEEC--CEEEEECCCE---EEEEECcCCcEEEEEECCC
Confidence 34443 43322 222 233455666644 5888887765 9999999999988877653
No 351
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.07 E-value=8.6e-05 Score=78.47 Aligned_cols=190 Identities=12% Similarity=0.125 Sum_probs=133.7
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
++..++.|+....+..+|+++.+..+...-.. +.+.-+ -.+++.+.+|...|+|.+-|..+.+.+.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a----------~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~ 213 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA----------SGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTF 213 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC----------CceEEE--EecCcEEEeecccceEEeecCCcCceeeee
Confidence 44567777778888999999887776654322 233333 345789999999999999999999888877
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
..+ .+.+. +|+-.|+.|++++.........-|.-|+|||++.-+.+..++. + . .-.-+.|.
T Consensus 214 ~aH----------s~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-----~-~-~P~flrf~ 274 (1118)
T KOG1275|consen 214 DAH----------SGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-----P-Y-GPQFLRFH 274 (1118)
T ss_pred ecc----------cccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc-----c-c-Cchhhhhc
Confidence 654 44454 4566799999998665554555688899999998776554432 1 1 12346677
Q ss_pred CC-CCeEEEEeCCCcEEEEEcc---cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEe
Q 040987 565 PN-RRAAVSSSYGGDFKVWICN---DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWD 635 (762)
Q Consensus 565 pd-~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd 635 (762)
|. ...+++++..|...+-|.. +....... .......+..+.+|++|..||.|. +|.|.+|.
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~----------v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM----------VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeE----------EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 74 3467778888999888833 22111111 112245589999999999999998 99999997
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.06 E-value=0.0019 Score=60.74 Aligned_cols=197 Identities=11% Similarity=0.144 Sum_probs=108.1
Q ss_pred CceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 447 GLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 447 ~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
..+..++|+|+.+ ++++....+.|..++. +++.+.++.... ......+++..++.++++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g---------~~D~EgI~y~g~~~~vl~~E-------- 83 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG---------FGDYEGITYLGNGRYVLSEE-------- 83 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS----------SSEEEEEE-STTEEEEEET--------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC---------CCCceeEEEECCCEEEEEEc--------
Confidence 4689999999755 5566667788888886 466666665432 34578889988887777664
Q ss_pred CceeEEEEEEecCCCc---eeEEEEEe--ec-CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc---ccccccccCC
Q 040987 526 GSLVCLKFWVSGTQNK---EFTLSTIV--YE-PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND---ELQQKDLQSS 596 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~---~~~~~~~~--~~-~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~ 596 (762)
.++.+.++++..... ........ .. .+ ...+-.++|+|.++.|+.+-+..-..+|.+.. ..........
T Consensus 84 -r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~-N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 84 -RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKG-NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp -TTTEEEEEEE----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-H
T ss_pred -CCCcEEEEEEeccccccchhhceEEecccccCC-CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccc
Confidence 678999999854322 11111111 11 23 56789999999888887777776677777764 1111111000
Q ss_pred ceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCCeEEEEecccc---------CceeEEEEeCCCCEEE
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRNVLVAVIGETL---------TPIMNMSFVGSSEYLV 665 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~~~~~~l~~~~---------~~v~~~~~s~dg~~l~ 665 (762)
.+.. .......+.+++++|.. .+++.+. ...|..+| .+|+.+..+.-.. ..-..++|.++|++.+
T Consensus 162 ~~~~---~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 162 DLDD---DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp HHH----HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccc---ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1110 11234567899999865 4555555 78999999 5576665542211 2367899999996555
Q ss_pred EE
Q 040987 666 AT 667 (762)
Q Consensus 666 s~ 667 (762)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 44
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.03 E-value=0.0053 Score=62.55 Aligned_cols=275 Identities=15% Similarity=0.105 Sum_probs=135.0
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC---------
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS--------- 425 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~--------- 425 (762)
.|+.+.|.++..-|+.+...|.|.+|.....+... .....+-..+.+.+- ...++.-.+.|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--------GGGSS-SEEE-GGG--TT-SEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccc------cccCCCcceEEehhhCCcccccc
Confidence 47899999998899999999999999876654321 000001111111110 00111112222211
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
..+...+.... +.|.+++.| |=-++++|+.+|.+.+.|++....+....... +.........++++.
T Consensus 76 f~P~~l~~~~~----------g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~--~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 76 FLPLTLLDAKQ----------GPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE--SFLSKSSSSYVTSIE 142 (395)
T ss_dssp EEEEEEE---S-----------SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEE
T ss_pred cCchhheeccC----------CcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc--cccccccccCeeEEE
Confidence 11222222222 788999987 44589999999999999998877666533222 111122255678888
Q ss_pred Eec-----CC---CeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEee-cCCCCCceEEEE-EcCC-C------
Q 040987 506 LSQ-----DG---SLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVY-EPHRDAGISAVA-FHPN-R------ 567 (762)
Q Consensus 506 ~sp-----~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~-~~h~~~~v~~~~-~spd-~------ 567 (762)
|+- |+ -.+.+|. ..|.+.+|.+.- ....+....... ..+ .+.|..+. ++.+ |
T Consensus 143 F~vm~~~~D~ySSi~L~vGT---------n~G~v~~fkIlp~~~g~f~v~~~~~~~~~-~~~i~~I~~i~~~~G~~a~At 212 (395)
T PF08596_consen 143 FSVMTLGGDGYSSICLLVGT---------NSGNVLTFKILPSSNGRFSVQFAGATTNH-DSPILSIIPINADTGESALAT 212 (395)
T ss_dssp EEEEE-TTSSSEEEEEEEEE---------TTSEEEEEEEEE-GGG-EEEEEEEEE--S-S----EEEEEETTT--B-B-B
T ss_pred EEEEecCCCcccceEEEEEe---------CCCCEEEEEEecCCCCceEEEEeeccccC-CCceEEEEEEECCCCCcccCc
Confidence 863 33 4677777 778999998752 222222221111 234 45555444 3222 1
Q ss_pred --------------CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc-----CCCcEEEEEc-
Q 040987 568 --------------RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS-----ADGSVLAVAA- 627 (762)
Q Consensus 568 --------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~dg~~la~~~- 627 (762)
.+++.++ +..++++...+.+...... ........+.+- ..+..|++-.
T Consensus 213 ~~~~~~l~~g~~i~g~vVvvS-e~~irv~~~~~~k~~~K~~-----------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~ 280 (395)
T PF08596_consen 213 ISAMQGLSKGISIPGYVVVVS-ESDIRVFKPPKSKGAHKSF-----------DDPFLCSSASVVPTISRNGGYCLVCLFN 280 (395)
T ss_dssp HHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE------------SS-EEEEEEEEEEEE-EEEEEEEEEEET
T ss_pred hhHhhccccCCCcCcEEEEEc-ccceEEEeCCCCcccceee-----------ccccccceEEEEeecccCCceEEEEEEC
Confidence 1444444 6679999988766544331 011122233342 2445555555
Q ss_pred CCeEEEEeCCCCeEEEEecccc----CceeEEEEeCCCCEEEEEEcCC
Q 040987 628 ETVITLWDPDRNVLVAVIGETL----TPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 628 d~~i~iwd~~~~~~~~~l~~~~----~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
+|.|++|.+-.-+.+..+.-+. ..+....|+++|..++-.+...
T Consensus 281 ~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE 328 (395)
T PF08596_consen 281 NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE 328 (395)
T ss_dssp TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE
T ss_pred CCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCccc
Confidence 9999999999988888775432 2356677888888777776654
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0074 Score=62.05 Aligned_cols=264 Identities=13% Similarity=0.055 Sum_probs=169.1
Q ss_pred ceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~ 431 (762)
....+...+++..++.... ...+...+............+ .....++.++++..+++.. .++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 3455677778755544432 224555554422222222222 3445678888888665554 468999999887766666
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec---CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE---NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
..... ....++++|+++.+.++.. ++.+.+.|..+.+........ .. ...++++|
T Consensus 112 ~~vG~-----------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG----------~~-P~~~a~~p 169 (381)
T COG3391 112 IPVGL-----------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG----------NT-PTGVAVDP 169 (381)
T ss_pred eeecc-----------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC----------CC-cceEEECC
Confidence 54322 3468999999987777655 689999999988877764331 12 28899999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICN 585 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~ 585 (762)
+|+.+..... .++.|.+.|..+..... -......+- ...-..+.++|+|.++...... +.+...|..
T Consensus 170 ~g~~vyv~~~--------~~~~v~vi~~~~~~v~~-~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 170 DGNKVYVTNS--------DDNTVSVIDTSGNSVVR-GSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred CCCeEEEEec--------CCCeEEEEeCCCcceec-ccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence 9998777753 67899999977664442 100000111 2344578999999976665443 588888888
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccC---ceeEEEEeCC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLT---PIMNMSFVGS 660 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~---~v~~~~~s~d 660 (762)
++....... ..... ....+..+|+|+.+.+.. .+.+.+-|..+............ .+..+++.+.
T Consensus 240 ~~~v~~~~~---------~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 240 TGNVTATDL---------PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CceEEEecc---------ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 776554310 00112 455789999999998885 58999999999877776543332 2555666553
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.00 E-value=0.004 Score=64.40 Aligned_cols=228 Identities=12% Similarity=0.092 Sum_probs=119.1
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.|.+|+.. |+.+..+.-.. +.+..+.|+.+.+ |++...||.+++||+.... ...+....... .-
T Consensus 62 ~I~iys~s-G~ll~~i~w~~----------~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~---~v 125 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS----------GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEE---KV 125 (410)
T ss_pred EEEEECCC-CCEeEEEEECC----------CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhcccc---Cc
Confidence 47777765 55555554433 5788999998654 5566799999999986433 11111100000 00
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC-ceeEEE---EEeecCCCCCceE-EEEEcCCCCeEE
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN-KEFTLS---TIVYEPHRDAGIS-AVAFHPNRRAAV 571 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~---~~~~~~h~~~~v~-~~~~spd~~~l~ 571 (762)
....+....+..+|-.+.+.+ +.+.+.+-.... ....+. ......+...... ...++.+....+
T Consensus 126 ~e~~i~~~~~~~~GivvLt~~-----------~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i 194 (410)
T PF04841_consen 126 LECRIFAIWFYKNGIVVLTGN-----------NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEI 194 (410)
T ss_pred ccccccccccCCCCEEEECCC-----------CeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEE
Confidence 012223334444554444432 333333221111 111111 0000001000111 123444555555
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc-c
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET-L 649 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~-~ 649 (762)
....++.+.+.+-..... . ...+++..|+.||+|++||.-. +|.+.+.+.+-.+.+..+... .
T Consensus 195 ~~~~g~~i~~i~~~~~~~---i------------~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 195 LLANGETIYIIDENSFKQ---I------------DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EEecCCEEEEEEcccccc---c------------cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 555555565444332111 1 1246899999999999999887 899999987766666666433 3
Q ss_pred CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEE
Q 040987 650 TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 650 ~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
.....+.|..+...++.- .+. |.+.........+.+.
T Consensus 260 ~~p~~~~WCG~dav~l~~-~~~---l~lvg~~~~~~~~~~~ 296 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW-EDE---LLLVGPDGDSISFWYD 296 (410)
T ss_pred CCCcEEEEECCCcEEEEe-CCE---EEEECCCCCceEEecc
Confidence 456788998876555444 333 7776655554444443
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.016 Score=60.03 Aligned_cols=263 Identities=11% Similarity=0.077 Sum_probs=128.0
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
.|.+|+..........-..+.+.++.|+.+..++ +...+|.+++||+.. +. .+.-.. ........+..+....+.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G-~~--~fsl~~-~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFG-EF--QFSLGE-EIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCC-ce--eechhh-hccccCcccccccccccC
Confidence 5889987755543333233789999999876555 455999999999873 33 221110 000000011222222333
Q ss_pred CCCCEEEEeecCceEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
.+| ++.-..++.+.+.+-.... ....+.....................++.+....+... .++.+.+.
T Consensus 137 ~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---------~g~~i~~i 205 (410)
T PF04841_consen 137 KNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---------NGETIYII 205 (410)
T ss_pred CCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---------cCCEEEEE
Confidence 344 3333445555444332221 11111100000000000000000123444444444333 33445433
Q ss_pred EecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEE
Q 040987 535 VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA 614 (762)
Q Consensus 535 d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 614 (762)
+...... + .. .+++..+++||+|+++|.-..+|.+.+....-.+...... . ........|
T Consensus 206 ~~~~~~~---i------~~-~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~---------~-~~~~~p~~~ 265 (410)
T PF04841_consen 206 DENSFKQ---I------DS-DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD---------T-DSKSPPKQM 265 (410)
T ss_pred Ecccccc---c------cC-CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee---------c-CcCCCCcEE
Confidence 3222111 1 11 4589999999999999999999999888765444332221 0 112344455
Q ss_pred EEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 615 AFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 615 ~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
.|.-+ |..+.-|+ ..+..+..... .+.|.-++..++..-.|| |+|..-+..+.+......
T Consensus 266 ~WCG~--------dav~l~~~----~~l~lvg~~~~---~~~~~~~~~~~l~~E~DG---~riit~~~~~~l~~Vp~~ 325 (410)
T PF04841_consen 266 AWCGN--------DAVVLSWE----DELLLVGPDGD---SISFWYDGPVILVSEIDG---VRIITSTSHEFLQRVPDS 325 (410)
T ss_pred EEECC--------CcEEEEeC----CEEEEECCCCC---ceEEeccCceEEeccCCc---eEEEeCCceEEEEECCHH
Confidence 55444 44444441 12222221221 245555666677777788 999977766666544433
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.0075 Score=59.01 Aligned_cols=238 Identities=15% Similarity=0.012 Sum_probs=130.7
Q ss_pred EEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 400 FTESPDPSLSSIS-CADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 400 ~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
..|.++...|+.. -..+.|.-|+..+++...-... +.+.++..-..+..|+++ ..| +.+++..++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p------------~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~ 95 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP------------GGFSSGALIDAGGRLIAC-EHG-VRLLDPDTG 95 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC------------CCcccceeecCCCeEEEE-ccc-cEEEeccCC
Confidence 3456666644443 3466788888876543322211 223333333333344443 333 667777555
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee--ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCC
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK--LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDA 556 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~ 556 (762)
.....+.....+.. ....+.....|+|.+.++.... ........-+.++.++. .+.....+ ..+ -.
T Consensus 96 ~~~t~~~~~~~~~~-----~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-----~~~-~~ 163 (307)
T COG3386 96 GKITLLAEPEDGLP-----LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-----DDD-LT 163 (307)
T ss_pred ceeEEeccccCCCC-----cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-----cCc-EE
Confidence 44333322222111 3556788899999877765430 01111112334444443 33333322 222 33
Q ss_pred ceEEEEEcCCCCeEEEEeCC-CcEEEEEccc--ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC-eE
Q 040987 557 GISAVAFHPNRRAAVSSSYG-GDFKVWICND--ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET-VI 631 (762)
Q Consensus 557 ~v~~~~~spd~~~l~~~~~d-g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~-~i 631 (762)
.-+.++||||++.|..+... +.|.-|++.. +..... ..........+..-.++...+|.+-+++. +| .|
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~------~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR------RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc------ceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 44689999999887776553 6777777763 111100 01111222345555677778888876554 43 99
Q ss_pred EEEeCCCCeEEEEeccccCceeEEEEeC-CCCEEEEEEcC
Q 040987 632 TLWDPDRNVLVAVIGETLTPIMNMSFVG-SSEYLVATSWG 670 (762)
Q Consensus 632 ~iwd~~~~~~~~~l~~~~~~v~~~~~s~-dg~~l~s~~~d 670 (762)
.+|+.+ |+++..+.-+...+++++|-. +.+.|...+..
T Consensus 238 ~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 999999 999998887777788888875 45555555443
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.91 E-value=0.0018 Score=65.92 Aligned_cols=273 Identities=12% Similarity=0.098 Sum_probs=137.0
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceee-cc---cccccccccccccCCCCccc---------CCccccceee
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFA-TN---DNKMNLNLMNNEEERPGVRD---------NDDADLCTTW 349 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 349 (762)
.|+.+.|+++..-|++|...|.|-||....++... .. ........+........+.. .....+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999998899999999999999887665443 00 00001111111111111111 0112344455
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc---CC------CCCCeEEEEeC-----CCC---CeEEEE
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL---PR------IGSPLLYFTES-----PDP---SLSSIS 412 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~---~~------~~~~v~~~~~s-----~~~---~~l~~~ 412 (762)
+...+.|++++.|.= -+++.|..+|.+.+.|++....++. .. ....++++.|+ .|+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 667889999999754 4999999999999999987766432 11 23357777775 233 468889
Q ss_pred ecCCcEEEEEcCC---ceEEEEEccCCCCCCCCCcccCceeeEE-EeCCC--------------------CEEEEeecCc
Q 040987 413 CADNQVHLLKMPS---MEIIRSISGIKLPCPLPEEYKGLCRDIA-FNHDG--------------------GLVALRAENY 468 (762)
Q Consensus 413 ~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~--------------------~~l~~~~~dg 468 (762)
+..|.+.+|.+.- +.-...+.+.. ..+++.+..+. ++.+. ..+++...+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGAT------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred eCCCCEEEEEEecCCCCceEEEEeecc------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 9999999997641 22111111111 00113333333 32211 1233344556
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE-----ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL-----SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
.++++...+.+...+... . ......+.+ ...+..|++-. .+|.+++|.+..-+.+.
T Consensus 236 ~irv~~~~~~k~~~K~~~--~--------~~~~~~~~vv~~~~~~~~~~Lv~l~---------~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFD--D--------PFLCSSASVVPTISRNGGYCLVCLF---------NNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp EEEEE-TT---EEEEE-S--S---------EEEEEEEEEEEE-EEEEEEEEEEE---------TTSEEEEEETTT--EEE
T ss_pred ceEEEeCCCCcccceeec--c--------ccccceEEEEeecccCCceEEEEEE---------CCCcEEEEECCCchHhh
Confidence 799999987765443321 1 122233334 23566677776 88999999999887776
Q ss_pred EEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 544 ~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
.+... ...+ ...+....++++|..++-.+. ..+.++.+
T Consensus 297 ~~~l~-~~~d-~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 297 SVSLP-PPLD-SRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEE-S-S----HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccCC-Cccc-cccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 66431 0112 234556778888987766653 34555444
No 359
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.86 E-value=4.3e-06 Score=84.38 Aligned_cols=190 Identities=17% Similarity=0.208 Sum_probs=121.5
Q ss_pred ceeEEEEecCCCeEEEEecCCcc---eeeeecCcccccCCceeec-CCCEEEEEeC-----CEEEEEEcccce--EE--e
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVN---SKMIRGGRSYVSSPPAFSN-DVKRLLVCTS-----NTVSIFSTSTGL--QI--S 108 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~---~~~~~~h~~~v~~~~~~s~-dg~~la~~~~-----~~i~iwd~~~~~--~~--~ 108 (762)
+..++|+|..+|.|.+-.+.... .....+|..+-++ ++|++ |-.+||+|-+ ..+.|||+.++- +. .
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~-lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~ 147 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTS-LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP 147 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceecccccccccc-cccccccHHHHHhhhhhhcccCCccceecccccCCCcccc
Confidence 46899999999999998877432 4456888888887 99987 5678888864 689999998761 11 1
Q ss_pred eecC-CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCce
Q 040987 109 SLEG-HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKL 187 (762)
Q Consensus 109 ~l~~-h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 187 (762)
.|.+ -.....+++|..+. +++.+|...+.+.++|++...
T Consensus 148 ~fs~~~l~gqns~cwlrd~-------klvlaGm~sr~~~ifdlRqs~--------------------------------- 187 (783)
T KOG1008|consen 148 LFSSSTLDGQNSVCWLRDT-------KLVLAGMTSRSVHIFDLRQSL--------------------------------- 187 (783)
T ss_pred ccccccccCccccccccCc-------chhhcccccchhhhhhhhhhh---------------------------------
Confidence 1222 23344566666555 555677777777777765210
Q ss_pred EEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC-CCCEEEEEeCCeEEEEEc-cC
Q 040987 188 FAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS-SGKYFGIRKQRKLLIWKV-PD 265 (762)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~~~i~iwd~-~~ 265 (762)
. ....-.+..+..+...| .+.|+++..++.|.+||. ..
T Consensus 188 --------------------------------------~--~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rn 227 (783)
T KOG1008|consen 188 --------------------------------------D--SVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRN 227 (783)
T ss_pred --------------------------------------h--hhhhhhhhhcccceecCCCCCceeccccCceeeccchhh
Confidence 0 00111234566778888 888999888999999994 33
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcCCCc-EEEEeec-CCeEEEEeccC
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHPTQR-IVAAGDV-TGRILIWRGFG 312 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~-dg~v~vw~~~~ 312 (762)
-+...+.+..........+..++|.|... .+++... .++|+++++..
T Consensus 228 ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 228 IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 22211111111111223589999999433 4555554 57899999753
No 360
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.01 Score=54.76 Aligned_cols=220 Identities=11% Similarity=0.056 Sum_probs=135.8
Q ss_pred ceeeEEEeCCC-CEEEEeecCce-EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 448 LCRDIAFNHDG-GLVALRAENYC-IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 448 ~v~~~~~s~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
....++++|.. +-++.+-.-|+ ..++|....+.+..+......| ..-.=.|||||.+|.....+. +
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH--------fyGHGvfs~dG~~LYATEndf--d-- 136 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH--------FYGHGVFSPDGRLLYATENDF--D-- 136 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce--------eecccccCCCCcEEEeecCCC--C--
Confidence 34568888854 44666666664 5689998888777766554422 334458999999999886443 1
Q ss_pred CceeEEEEEEecCCC-ceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC------------------CCcEEEEEccc
Q 040987 526 GSLVCLKFWVSGTQN-KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY------------------GGDFKVWICND 586 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~-~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~------------------dg~i~iwd~~~ 586 (762)
...|.|-+||.+.+- .+-++ ..| .-.-..+.|.+||+.++.+.. .-.+.+.|..+
T Consensus 137 ~~rGViGvYd~r~~fqrvgE~-----~t~-GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 137 PNRGVIGVYDAREGFQRVGEF-----STH-GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred CCCceEEEEecccccceeccc-----ccC-CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 256899999988432 22223 344 445567999999999987742 01233334334
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc------CCeEEEEeCCCCeEEEEeccc-------cCcee
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA------ETVITLWDPDRNVLVAVIGET-------LTPIM 653 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~------d~~i~iwd~~~~~~~~~l~~~-------~~~v~ 653 (762)
+..+.... . ....+...|..++..+||+.++.+- |.--.+=-...++.+..+... ..-|-
T Consensus 211 G~liekh~---L----p~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig 283 (366)
T COG3490 211 GNLIEKHT---L----PASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG 283 (366)
T ss_pred cchhhhcc---C----chhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence 43332221 0 0113456788888888888776542 111122222334444443221 23377
Q ss_pred EEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 654 NMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
+++.+.+..+++..+..|. ...+||..+|+++..-....
T Consensus 284 siA~n~~~glV~lTSP~GN-~~vi~da~tG~vv~~a~l~d 322 (366)
T COG3490 284 SIAANRRDGLVALTSPRGN-RAVIWDAATGAVVSEAALPD 322 (366)
T ss_pred heeecccCCeEEEecCCCC-eEEEEEcCCCcEEecccccc
Confidence 8888887778888887774 69999999999987665544
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.83 E-value=0.05 Score=57.23 Aligned_cols=250 Identities=14% Similarity=0.080 Sum_probs=134.5
Q ss_pred EEEEeCCCCCeEEEEec-CC----cEEEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-----
Q 040987 398 LYFTESPDPSLSSISCA-DN----QVHLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE----- 466 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~-d~----~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----- 466 (762)
....+||||++++.+-. .| .++++|+.+++.+... ... ....+.|.+|++.++....
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------------~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------------KFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------------ESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------------ccceEEEeCCCCEEEEEEeCcccc
Confidence 35788999999987643 33 5999999999776542 221 1233999999988776653
Q ss_pred ------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCce-eEEEEEEecCC
Q 040987 467 ------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSL-VCLKFWVSGTQ 539 (762)
Q Consensus 467 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d-~~i~iwd~~~~ 539 (762)
...|+.|.+.+...-..+....... ......+..++|+++|+..... + .+ ..+.+.++...
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~------~~~~~~~~~s~d~~~l~i~~~~----~--~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDE------PFWFVSVSRSKDGRYLFISSSS----G--TSESEVYLLDLDDG 262 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTC------TTSEEEEEE-TTSSEEEEEEES----S--SSEEEEEEEECCCT
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCC------CcEEEEEEecCcccEEEEEEEc----c--ccCCeEEEEecccc
Confidence 3347888887665443333322211 1225678899999998876531 1 33 67888888875
Q ss_pred ----CceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC---CCcEEEEEcccccccccccCCceeeeeecccCCC--C
Q 040987 540 ----NKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY---GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK--A 610 (762)
Q Consensus 540 ----~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 610 (762)
.....+. ... .+....+... .+.+++.... .+.|...++...... .|... ...+.. .
T Consensus 263 ~~~~~~~~~l~----~~~-~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~--l~~~~~~~~ 328 (414)
T PF02897_consen 263 GSPDAKPKLLS----PRE-DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTV--LIPEDEDVS 328 (414)
T ss_dssp TTSS-SEEEEE----ESS-SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEE--EE--SSSEE
T ss_pred CCCcCCcEEEe----CCC-CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc------cceeE--EcCCCCcee
Confidence 2222221 111 2222333333 4444444432 245655666655421 11111 112333 3
Q ss_pred eEEEEEcCCCcEEEEEc--C--CeEEEEeCCCCeEEEEecc-ccCceeEEEEeCCCCEEEE--EEcCCCCeEEEEECCCC
Q 040987 611 MTAAAFSADGSVLAVAA--E--TVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGSSEYLVA--TSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 611 i~~~~~s~dg~~la~~~--d--~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~dg~~l~s--~~~d~~~~v~vwd~~~~ 683 (762)
+..+. ..+.+|+... + ..|+++++..+.....+.. -.+.|..+...+++..+.. .|.-..++++.||+.++
T Consensus 329 l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 329 LEDVS--LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEE--EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEE--EECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 44444 4455555543 4 4689999994444333332 2344666665565554433 33333345999999999
Q ss_pred ceee
Q 040987 684 SISW 687 (762)
Q Consensus 684 ~~~~ 687 (762)
+...
T Consensus 407 ~~~~ 410 (414)
T PF02897_consen 407 ELTL 410 (414)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8754
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.75 E-value=0.019 Score=56.54 Aligned_cols=244 Identities=16% Similarity=0.099 Sum_probs=130.2
Q ss_pred cCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc---CCCC-
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG---IKLP- 438 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~- 438 (762)
..++.|+.|..+| +++++...............|..+...++-+.+++- .|+.++++++........... .+..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccccc
Confidence 3577899998888 899998332222222222339999998887777766 459999999987443331110 0000
Q ss_pred CCCCCcccCceeeEE--EeCCCCEEEEeecCceEEEEEcCCC-----CceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 439 CPLPEEYKGLCRDIA--FNHDGGLVALRAENYCIHFYSLLDD-----RGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~--~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
..........+..++ -...+...++......|.+|..... +...++.. ...+..++|. ++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-----------p~~~~~i~~~--~~ 149 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-----------PDPPSSIAFL--GN 149 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-----------CCCcEEEEEe--CC
Confidence 000000012333333 1123333333444458888887653 23333333 4568888888 55
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee-------cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY-------EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
.++.+. .....+.|+.++.....+..... ... ..++..+... ++.+|++. |..-.+.|.
T Consensus 150 ~i~v~~----------~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~ 215 (275)
T PF00780_consen 150 KICVGT----------SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS-SKPLGIFQLS-DNEFLLCY--DNIGVFVNK 215 (275)
T ss_pred EEEEEe----------CCceEEEecCCCCceEEeCccCCcchhhhcccC-CCceEEEEeC-CceEEEEe--cceEEEEcC
Confidence 666664 24678888886654332211000 000 1233333333 44555543 333333444
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccc
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGET 648 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~ 648 (762)
. |+..... .-.| ...+.++++ ...+|+.-.++.|.||++.++++++.+...
T Consensus 216 ~-G~~~r~~-~i~W---------~~~p~~~~~--~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 216 N-GEPSRKS-TIQW---------SSAPQSVAY--SSPYLIAFSSNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred C-CCcCccc-EEEc---------CCchhEEEE--ECCEEEEECCCEEEEEECcCCcEEEEEECC
Confidence 3 3222200 0012 234455665 334877777777999999999999988644
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.0055 Score=56.42 Aligned_cols=245 Identities=9% Similarity=0.016 Sum_probs=136.2
Q ss_pred eeEEEEecCC-CEEEEEecCCe-EEEEecCCCceec-cCCC--CCCeEEEEeCCCCCeEEEEecC-----CcEEEEEcCC
Q 040987 356 VSVLIFSSDG-AYLYSGGKEGV-LVVWQLDTGKKKF-LPRI--GSPLLYFTESPDPSLSSISCAD-----NQVHLLKMPS 425 (762)
Q Consensus 356 v~~~~~s~~g-~~l~s~~~dg~-i~~wd~~~~~~~~-~~~~--~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~ 425 (762)
-..++|+|.. .-++.+-.-|+ ..++|..+.+... +... ..-.-.-.|||||.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3457788754 34556655555 5678888776532 2111 1122234789999999986443 5799999875
Q ss_pred -ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------------------ceEEEEEcCCCCceeeEEe
Q 040987 426 -MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------------------YCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 426 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~~ 486 (762)
.+.+.++..|. -....+.+.+||+.++.+... -.+.+.|..++..+.+...
T Consensus 150 ~fqrvgE~~t~G----------iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 150 GFQRVGEFSTHG----------IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred ccceecccccCC----------cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 34455565554 344679999999998876431 1234445445544443333
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE--EeecCCCCCceEEEEEc
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST--IVYEPHRDAGISAVAFH 564 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~h~~~~v~~~~~s 564 (762)
.. +.+...+..++..+||..++.+....+.+ |.--.+=-...++....+.. .....- ...|-+++.+
T Consensus 220 p~------~l~~lSiRHld~g~dgtvwfgcQy~G~~~----d~ppLvg~~~~g~~l~~~~~pee~~~~~-anYigsiA~n 288 (366)
T COG3490 220 PA------SLRQLSIRHLDIGRDGTVWFGCQYRGPRN----DLPPLVGHFRKGEPLEFLDLPEEQTAAF-ANYIGSIAAN 288 (366)
T ss_pred ch------hhhhcceeeeeeCCCCcEEEEEEeeCCCc----cCCcceeeccCCCcCcccCCCHHHHHHH-Hhhhhheeec
Confidence 21 12266789999999998877765332111 11111111111221111110 000011 3467788888
Q ss_pred CCCCeEEEEeCC-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 565 PNRRAAVSSSYG-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 565 pd~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
.+..+++..+-. +...+||..++..+.... -.....++-. .+-+.++.++|.+.++.
T Consensus 289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~a~-------------l~daaGva~~-~~gf~vssg~G~~~~~s 346 (366)
T COG3490 289 RRDGLVALTSPRGNRAVIWDAATGAVVSEAA-------------LPDAAGVAAA-KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ccCCeEEEecCCCCeEEEEEcCCCcEEeccc-------------ccccccceec-cCceEEecCCceEEecc
Confidence 766666665544 457789999998765542 1122223321 23355555588888874
No 364
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.74 E-value=1.9e-05 Score=79.91 Aligned_cols=186 Identities=12% Similarity=0.161 Sum_probs=124.1
Q ss_pred CCCCccccEEEEecCCcccc-ceeeeccCCCceEEEECC-CCCEEEEE-----eCCeEEEEEccCchhhhheeeeeeecc
Q 040987 208 RPNTMNGRICKCNLTESRLA-GGVTLAEMKEPQVITISS-SGKYFGIR-----KQRKLLIWKVPDVEAERVVMRKITLHH 280 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~sp-dg~~la~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~ 280 (762)
+.|..+|.|.+-..+...-. .....++....++++|++ |.+.||+| .+..+.|||+.++-..+.....+..+-
T Consensus 74 avG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~ 153 (783)
T KOG1008|consen 74 AVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSST 153 (783)
T ss_pred hhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccccc
Confidence 78889999999988765544 456677888999999998 56788877 467899999988732211222233334
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
.....+++|..+.+.+.+|.....+.++|++-.. .....-.+..+..+.
T Consensus 154 l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-------------------------------~~~~svnTk~vqG~t 202 (783)
T KOG1008|consen 154 LDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-------------------------------DSVSSVNTKYVQGIT 202 (783)
T ss_pred ccCccccccccCcchhhcccccchhhhhhhhhhh-------------------------------hhhhhhhhhhcccce
Confidence 5567789999899999999988899999985211 011111233455677
Q ss_pred Eec-CCCEEEEEecCCeEEEEec-CCCce--eccCC----CCCCeEEEEeCCCCC--eEEEEecCCcEEEEEcCC
Q 040987 361 FSS-DGAYLYSGGKEGVLVVWQL-DTGKK--KFLPR----IGSPLLYFTESPDPS--LSSISCADNQVHLLKMPS 425 (762)
Q Consensus 361 ~s~-~g~~l~s~~~dg~i~~wd~-~~~~~--~~~~~----~~~~v~~~~~s~~~~--~l~~~~~d~~i~i~d~~~ 425 (762)
..| .++++++-. |+.|.+||. ..-+. +.... ....+..++|.|... ..+..-..++|++||+..
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 777 677887765 899999994 32222 11111 223589999998543 333333467899998753
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.74 E-value=0.066 Score=56.33 Aligned_cols=248 Identities=13% Similarity=0.055 Sum_probs=131.7
Q ss_pred CeEEEEEcCCCcEEEEe-ecC----CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 283 KLTVLAFHPTQRIVAAG-DVT----GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~-~~d----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
.+....+||||+++|.+ +.. ..++++|+.+++.+. ..+... ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-----------------------------d~i~~~--~~~ 173 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-----------------------------DGIENP--KFS 173 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-----------------------------EEEEEE--ESE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-----------------------------Cccccc--ccc
Confidence 34467899999999865 222 369999998885543 122211 112
Q ss_pred EEEEecCCCEEEEEecC-----------CeEEEEecCCCcee--c-cCCCC-CC-eEEEEeCCCCCeEEEEecC----Cc
Q 040987 358 VLIFSSDGAYLYSGGKE-----------GVLVVWQLDTGKKK--F-LPRIG-SP-LLYFTESPDPSLSSISCAD----NQ 417 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~d-----------g~i~~wd~~~~~~~--~-~~~~~-~~-v~~~~~s~~~~~l~~~~~d----~~ 417 (762)
.+.|.+|++.|+....+ ..|+.|.+.+.... . +.... .. ...+..++|+++++..... ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 39999998887766533 34888888776542 2 22222 23 6688899999998865442 35
Q ss_pred EEEEEcCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCceEEEEEcCCCCceeeE-Eeecc
Q 040987 418 VHLLKMPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENYCIHFYSLLDDRGISEV-QVCER 489 (762)
Q Consensus 418 i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~-~~~~~ 489 (762)
+++.++..+ .....+..... +....+... .+.+++... .++.|...++......... .....
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~---------~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPRED---------GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSS---------S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred EEEEeccccCCCcCCcEEEeCCCC---------ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC
Confidence 788888764 22333322220 222223333 333444332 2367777788776531111 11111
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
.. ...+..+.. .+.+|+..... +....|+++++..+.....+. .+- .+.|..+...++++.
T Consensus 324 ~~------~~~l~~~~~--~~~~Lvl~~~~------~~~~~l~v~~~~~~~~~~~~~----~p~-~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 324 DE------DVSLEDVSL--FKDYLVLSYRE------NGSSRLRVYDLDDGKESREIP----LPE-AGSVSGVSGDFDSDE 384 (414)
T ss_dssp SS------SEEEEEEEE--ETTEEEEEEEE------TTEEEEEEEETT-TEEEEEEE----SSS-SSEEEEEES-TT-SE
T ss_pred CC------ceeEEEEEE--ECCEEEEEEEE------CCccEEEEEECCCCcEEeeec----CCc-ceEEeccCCCCCCCE
Confidence 00 223444444 45555554321 155688999998333333332 222 445666666666654
Q ss_pred EEEE--eC--CCcEEEEEccccccc
Q 040987 570 AVSS--SY--GGDFKVWICNDELQQ 590 (762)
Q Consensus 570 l~~~--~~--dg~i~iwd~~~~~~~ 590 (762)
+... +. .+++..||+.+++..
T Consensus 385 ~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 385 LRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4332 22 357888888877653
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.73 E-value=0.0064 Score=65.55 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=96.4
Q ss_pred ccccCCceeecCCCEEEEEe-------C--CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC-
Q 040987 73 SYVSSPPAFSNDVKRLLVCT-------S--NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD- 142 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~-------~--~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d- 142 (762)
..+.. +++||||+.+|+.. + ..|.+++. .+.....+.+. ..+.-.|+||| ..|++.+..
T Consensus 350 ~~vss-paiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG-------~~lw~v~dg~ 418 (591)
T PRK13616 350 GNITS-AALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDA-------DAVWVVVDGN 418 (591)
T ss_pred cCccc-ceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCC-------CceEEEecCc
Confidence 45665 99999999998876 3 36666675 33332223333 38889999998 455565432
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
..+++.+- ...+.+.+.+++
T Consensus 419 ~~~~v~~~------------------------------------------------------------~~~gql~~~~vd 438 (591)
T PRK13616 419 TVVRVIRD------------------------------------------------------------PATGQLARTPVD 438 (591)
T ss_pred ceEEEecc------------------------------------------------------------CCCceEEEEecc
Confidence 12222221 112344444554
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEE---EEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLI---WKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~i---wd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
.++... ...+.|..+.|||||+.||...++.|.+ -....++............-...+.++.|.+++.++ ++
T Consensus 439 ~ge~~~----~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~ 513 (591)
T PRK13616 439 ASAVAS----RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VG 513 (591)
T ss_pred Cchhhh----ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EE
Confidence 444431 3356799999999999999766788887 444445421111122233334446889999999854 55
Q ss_pred ecCCeEEEEec
Q 040987 300 DVTGRILIWRG 310 (762)
Q Consensus 300 ~~dg~v~vw~~ 310 (762)
..++...+|.+
T Consensus 514 ~~~~~~~v~~v 524 (591)
T PRK13616 514 RSDPEHPVWYV 524 (591)
T ss_pred ecCCCCceEEE
Confidence 55555555654
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.72 E-value=0.0013 Score=71.74 Aligned_cols=146 Identities=14% Similarity=0.078 Sum_probs=95.0
Q ss_pred CCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-------CeEEEEeeeccccCCCce
Q 040987 457 DGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-------SLMSTVDIKLAEEGIGSL 528 (762)
Q Consensus 457 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-------~~l~~~~~~~~~~~~~~d 528 (762)
+.++|+.. .....|+-.|+..|+.+.++..... .+|.. +.|+. .....|- .+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~---------~~v~~--~~p~~K~aqlt~e~tflGl---------s~ 551 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD---------IPVVD--IAPDSKFAQLTNEQTFLGL---------SD 551 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCC---------cceeE--ecccccccccCCCceEEEE---------CC
Confidence 33444433 3457899999999999888876422 22333 33321 2223333 55
Q ss_pred eEEEEEEecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 529 VCLKFWVSGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 529 ~~i~iwd~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
+.+..||++-... +..-....+ .. ....+|++-+.+| +||+|+.+|.||+||-........ +++-
T Consensus 552 n~lfriDpR~~~~k~v~~~~k~Y-~~-~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~-----------lp~l 617 (794)
T PF08553_consen 552 NSLFRIDPRLSGNKLVDSQSKQY-SS-KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTA-----------LPGL 617 (794)
T ss_pred CceEEeccCCCCCceeecccccc-cc-CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhc-----------CCCC
Confidence 7899999886432 111111111 22 5567888888776 688999999999999543222222 3355
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 608 KKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
+.+|..+..+.||+||++..+..+.+++.
T Consensus 618 G~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 618 GDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 79999999999999999888888888885
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.62 E-value=0.042 Score=55.41 Aligned_cols=172 Identities=18% Similarity=0.194 Sum_probs=105.1
Q ss_pred ccEEEEecCCc-----cccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCch-hhhheeeeeeeccCcCeEEE
Q 040987 214 GRICKCNLTES-----RLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVE-AERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 214 ~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~ 287 (762)
|.|.++++... +..........++|.+++-- +.+|+++.++.|.+|++...+ .. . .........+.++
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~---~-~~~~~~~~~i~sl 135 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLL---K-KAFYDSPFYITSL 135 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEE---E-EEEE-BSSSEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccch---h-hheecceEEEEEE
Confidence 99999999984 33323344557888888766 445888888999999999887 32 1 2222223356666
Q ss_pred EEcCCCcEEEEeecCCeEEEEeccCC-ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC
Q 040987 288 AFHPTQRIVAAGDVTGRILIWRGFGD-RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 366 (762)
... ++++++|.....+.++..... ..+. . ..-......++++.|-++++
T Consensus 136 ~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~---------------------------~-va~d~~~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 136 SVF--KNYILVGDAMKSVSLLRYDEENNKLI---------------------------L-VARDYQPRWVTAAEFLVDED 185 (321)
T ss_dssp EEE--TTEEEEEESSSSEEEEEEETTTE-EE---------------------------E-EEEESS-BEEEEEEEE-SSS
T ss_pred ecc--ccEEEEEEcccCEEEEEEEccCCEEE---------------------------E-EEecCCCccEEEEEEecCCc
Confidence 554 558999988888888865432 1111 0 01112344578888886767
Q ss_pred EEEEEecCCeEEEEecCCC-------c--e--eccCCCCCCeEEE---EeCC--CCC------eEEEEecCCcEEEE
Q 040987 367 YLYSGGKEGVLVVWQLDTG-------K--K--KFLPRIGSPLLYF---TESP--DPS------LSSISCADNQVHLL 421 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~-------~--~--~~~~~~~~~v~~~---~~s~--~~~------~l~~~~~d~~i~i~ 421 (762)
.++.+..+|.+.++..... . . ......+..|+++ .+.| .+. .++.++.+|.|...
T Consensus 186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999999999999877531 1 1 2233455677777 5555 222 37778888888744
No 369
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.53 E-value=0.1 Score=50.83 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=83.6
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
+.+..+..++||++++++.......-||.-.. ... ...+.. ...+..+.|+|++.+.+.+
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~--~~~r~~------~~riq~~gf~~~~~lw~~~---------- 204 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQ--PHNRNS------SRRIQSMGFSPDGNLWMLA---------- 204 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-E--EEE--S------SS-EEEEEE-TTS-EEEEE----------
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCc--cce--EEccCc------cceehhceecCCCCEEEEe----------
Confidence 67888889999999988876666667765322 111 111111 5679999999998887665
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
..+.|++=+.................. .-.+..++|.+++...++|+ .|.+ +...+.++ +|........
T Consensus 205 ~Gg~~~~s~~~~~~~~w~~~~~~~~~~-~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk--------tW~~~~~~~~ 273 (302)
T PF14870_consen 205 RGGQIQFSDDPDDGETWSEPIIPIKTN-GYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK--------TWQKDRVGEN 273 (302)
T ss_dssp TTTEEEEEE-TTEEEEE---B-TTSS---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS--------S-EE-GGGTT
T ss_pred CCcEEEEccCCCCccccccccCCcccC-ceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc--------cceECccccC
Confidence 556777766221111111100000011 33588999999988877665 4543 34444443 4444433334
Q ss_pred CCCCeEEEEEcCCCcEEEEEcCCeEEEE
Q 040987 607 KKKAMTAAAFSADGSVLAVAAETVITLW 634 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~d~~i~iw 634 (762)
-....+.+.|.++.+-++.|.+|.|.-|
T Consensus 274 ~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 274 VPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 4667889999988888999999987655
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.52 E-value=0.014 Score=63.02 Aligned_cols=193 Identities=13% Similarity=-0.000 Sum_probs=104.9
Q ss_pred CceeeEEEeCCCCEEEEee------cCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 447 GLCRDIAFNHDGGLVALRA------ENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..+.+.+++|||+.++... .|+ .|.+++. +.....+.. ......-.|+|||+.+++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~-----------g~~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLE-----------GHSLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeec-----------CCCCCCceECCCCCceEEEec
Confidence 3567899999999988765 233 4555554 222222211 123677899999998888752
Q ss_pred eccc---cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE---EEccccccccc
Q 040987 519 KLAE---EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV---WICNDELQQKD 592 (762)
Q Consensus 519 ~~~~---~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i---wd~~~~~~~~~ 592 (762)
.... ......+.+.+.+++.+.... .. .+.|..+.|||||..++... ++.|++ -....+. ...
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~~--------~~-~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l 485 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVAS--------RV-PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YAL 485 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhhh--------cc-CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eee
Confidence 1000 000012334433444332211 11 45799999999999998876 477776 3433443 111
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEecc--ccCceeEEEEeCCCCEEEEEE
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGE--TLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~--~~~~v~~~~~s~dg~~l~s~~ 668 (762)
.. .......-...+.++.|.+++.+++... +..+...++.... ...+.+ ...++..++=+++ .|+...
T Consensus 486 ~~-----~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 486 TN-----PREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred cc-----cEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEc
Confidence 10 1111122234468899999999664433 3445555555332 222222 2455766766653 455555
Q ss_pred cCC
Q 040987 669 WGS 671 (762)
Q Consensus 669 ~d~ 671 (762)
.++
T Consensus 558 ~~g 560 (591)
T PRK13616 558 ARA 560 (591)
T ss_pred CCc
Confidence 565
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.52 E-value=0.02 Score=57.68 Aligned_cols=191 Identities=13% Similarity=0.088 Sum_probs=107.5
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC----CCeEEEEeeeccccCC-CceeEEEEEEecCC-Cc
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD----GSLMSTVDIKLAEEGI-GSLVCLKFWVSGTQ-NK 541 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----g~~l~~~~~~~~~~~~-~~d~~i~iwd~~~~-~~ 541 (762)
..|++.|..+.+.+..+......+ ...+..+.+..+ ..++++|......+.. ...|.|.++++... ..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~------~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~ 75 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEH------VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN 75 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEE------EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred cEEEEEeCCCCeEEEEEECCCCce------EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc
Confidence 358889988888776666553322 223334444433 5678887754322221 12399999999984 21
Q ss_pred eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc-ccccccCCceeeeeecccCCCCeEEEEEcCCC
Q 040987 542 EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL-QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 542 ~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 620 (762)
...+........ .+.|++++-- +++ |+.+. .+.|.+|++...+ ....- .. .....++++... +
T Consensus 76 ~~~l~~i~~~~~-~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~---------~~-~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 76 NFKLKLIHSTEV-KGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKA---------FY-DSPFYITSLSVF--K 139 (321)
T ss_dssp --EEEEEEEEEE-SS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEE---------EE--BSSSEEEEEEE--T
T ss_pred ceEEEEEEEEee-cCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhh---------ee-cceEEEEEEecc--c
Confidence 112221111233 6788888766 444 54444 4789999998877 22221 11 112355555544 5
Q ss_pred cEEEEEc-CCeEEEEeCCC-CeEEEEecc--ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 621 SVLAVAA-ETVITLWDPDR-NVLVAVIGE--TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 621 ~~la~~~-d~~i~iwd~~~-~~~~~~l~~--~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.++++|+ ...+.++..+. +..+..+.. ....+.++.|-+|++.++.+..+|. +.++....
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn--l~~l~~~~ 203 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN--LFVLRYNP 203 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE--EEEEEE-S
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe--EEEEEECC
Confidence 6999998 66677664432 332323322 2344889999977788888988887 99988763
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.014 Score=57.08 Aligned_cols=206 Identities=17% Similarity=0.072 Sum_probs=120.7
Q ss_pred eEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 451 DIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 451 ~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
+..|.++...| .+--..+.|.-|+..+++.. .+.. ...+.++..-.++..|+++. .
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-----------p~~~~~~~~~d~~g~Lv~~~-----------~ 85 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-----------PGGFSSGALIDAGGRLIACE-----------H 85 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-----------CCCcccceeecCCCeEEEEc-----------c
Confidence 44567766644 44446678888888755322 1111 22234444434444444443 3
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-----C----CcEEEEEcc-cccccccccCCcee
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-----G----GDFKVWICN-DELQQKDLQSSGWS 599 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-----d----g~i~iwd~~-~~~~~~~~~~~~~~ 599 (762)
.+.+++.+++.....+.. ...+......+.+...|+|.+.++... . ..-.+|-+. .+.......
T Consensus 86 g~~~~~~~~~~~~t~~~~-~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~----- 159 (307)
T COG3386 86 GVRLLDPDTGGKITLLAE-PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD----- 159 (307)
T ss_pred ccEEEeccCCceeEEecc-ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-----
Confidence 567777765554322221 223332456678899999987775443 0 111344444 333333221
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC--C----e-EEEEeccccCceeEEEEeCCCCEEEEEEcC
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR--N----V-LVAVIGETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~--~----~-~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
.+-..-+.++||||++.|..+. .+.|.-|++.. + + ....+....+.--.++...+|.+.+++..+
T Consensus 160 ------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 160 ------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred ------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 1233456899999999988885 68898887762 2 1 122222334556678888899888766555
Q ss_pred CCCeEEEEECCCCceeeEEEEee
Q 040987 671 SKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 671 ~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
| +.|.+|+-+ |+++..+..+.
T Consensus 234 g-~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 234 G-GRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred C-ceEEEECCC-CcEEEEEECCC
Confidence 4 239999988 99999988884
No 373
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.50 E-value=0.27 Score=54.93 Aligned_cols=223 Identities=12% Similarity=0.011 Sum_probs=123.5
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC---------eEEEEeC----------------CCCCeEEEEecCCcEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP---------LLYFTES----------------PDPSLSSISCADNQVH 419 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---------v~~~~~s----------------~~~~~l~~~~~d~~i~ 419 (762)
+..++.++.++.|.-.|.++|+.+........ ...+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44677777888999999999887533222111 1112221 1345788888999999
Q ss_pred EEEcCCceEEEEEccCCCC---CCCCCcccCceeeEEEeC--CCCEEEEeec----------CceEEEEEcCCCCceeeE
Q 040987 420 LLKMPSMEIIRSISGIKLP---CPLPEEYKGLCRDIAFNH--DGGLVALRAE----------NYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 484 (762)
-.|.++|+.+..+...... ....+...+. ..+.-.| .+..+++++. +|.|+-+|..+++.+..+
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~-~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGY-YYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcc-cccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999998876431100 0000000000 0011111 1335555542 688999999999998877
Q ss_pred EeecccccC--CCC-----cceeE-EEEEEecCCCeEEEEeeec----------cccCCCceeEEEEEEecCCCceeEEE
Q 040987 485 QVCERNHQP--GDD-----VTVVV-TLVALSQDGSLMSTVDIKL----------AEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 485 ~~~~~~~~~--~~~-----~~~~v-~~~~~sp~g~~l~~~~~~~----------~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
......... ..+ ....+ ..++++++...+....... +.++ ...+.|.-.|.++++..+.++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n-~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADE-KYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcc-cccceEEEEeCCCCceEEEec
Confidence 642111100 000 00111 3445666655555433111 0111 135678888999999888776
Q ss_pred EEeecCCC------CCceEEEEEcC-CCC---eEEEEeCCCcEEEEEccccccccc
Q 040987 547 TIVYEPHR------DAGISAVAFHP-NRR---AAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 547 ~~~~~~h~------~~~v~~~~~sp-d~~---~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
. ..|. .....-+.+.. +|+ .++.++.+|.+.+.|-++++.+..
T Consensus 432 ~---~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 432 T---VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred c---cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 4 2220 01111122322 553 788889999999999998876654
No 374
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.49 E-value=0.035 Score=49.75 Aligned_cols=163 Identities=11% Similarity=0.090 Sum_probs=92.2
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE-EeCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS-SSYG 576 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~-~~~d 576 (762)
..+..+-..+|+|++++-.-.+..++-....+.++.|-....-.. +. .. -.--+.++|+.+.+.+.. -+.+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~--i~-----~~-v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVEL--IW-----NC-VGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCcee--ee-----hh-ccCCccccccccCcEEEEEccCc
Confidence 445667788999999544332222221123455666655432111 10 11 223357899988776554 4556
Q ss_pred CcEEEEE--cccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee
Q 040987 577 GDFKVWI--CNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM 653 (762)
Q Consensus 577 g~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~ 653 (762)
-+|.-|| ..++.....-. .+.............-.+++..+|.+.++.- .++|...|..+|+.+..+.-....|+
T Consensus 180 ~~V~a~dyd~~tG~~snr~~--i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKV--IFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred eEEeeeecCCCcccccCcce--eEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence 6776787 55554332211 1111100001111223455666787766664 89999999999999999988888999
Q ss_pred EEEEeCC--CCEEEEEEcC
Q 040987 654 NMSFVGS--SEYLVATSWG 670 (762)
Q Consensus 654 ~~~~s~d--g~~l~s~~~d 670 (762)
+.+|-.- .-+.+++..+
T Consensus 258 sccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred EEEecCCCccEEEEEehhc
Confidence 9999764 2344444433
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.048 Score=51.02 Aligned_cols=178 Identities=9% Similarity=0.014 Sum_probs=114.1
Q ss_pred cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce
Q 040987 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC 469 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 469 (762)
..+....+.++.|+|+.+.|++......-.++-...|+.++++.-... .....+.+..+++++++--.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~---------~DpE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF---------SDPETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc---------CChhHeEEecCCEEEEEehhcce
Confidence 344555699999999999999988887777777777999988643221 34467889999998888888899
Q ss_pred EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 470 IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
+.++.+..+..........-..............++|+|..+.|..+- +..-+.||..............
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---------Er~P~~I~~~~~~~~~l~~~~~- 221 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---------ERNPIGIFEVTQSPSSLSVHAS- 221 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---------ccCCcEEEEEecCCcccccccc-
Confidence 999988776544333221111101111145578899999998888886 4556666666533311111100
Q ss_pred ecCCC------CCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccc
Q 040987 550 YEPHR------DAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 550 ~~~h~------~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~ 587 (762)
..+. -..|.++.|.+. +.+|+-+.+++.+.-.|....
T Consensus 222 -~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 222 -LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred -cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0110 235677888874 556666666777766666543
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.40 E-value=0.00037 Score=44.00 Aligned_cols=39 Identities=49% Similarity=0.805 Sum_probs=34.7
Q ss_pred ceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEe
Q 040987 104 GLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWD 149 (762)
Q Consensus 104 ~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd 149 (762)
++++..+..|...|.++.|.+++ .++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-------KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-------CEEEEecCCCeEEEcC
Confidence 45677888899999999999998 6888999999999996
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.38 E-value=0.13 Score=48.36 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=115.5
Q ss_pred CceeeEEEeCCCCEEEEeecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 447 GLCRDIAFNHDGGLVALRAENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.....+.|..++.++-+.+.-| .|+.+|+.+++.........+.+ -..++...|.-+..+-
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F---------gEGit~~~d~l~qLTW-------- 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF---------GEGITILGDKLYQLTW-------- 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------EEEEEEETTEEEEEES--------
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc---------ceeEEEECCEEEEEEe--------
Confidence 4567888888888777776555 79999999998776655543322 3344444443333333
Q ss_pred CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 525 IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 525 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
.++...+||..+.+...++. +.+ .=..++ .|++.|+.+.....++++|..+.+....+. ....
T Consensus 108 --k~~~~f~yd~~tl~~~~~~~---y~~----EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~------V~~~ 170 (264)
T PF05096_consen 108 --KEGTGFVYDPNTLKKIGTFP---YPG----EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ------VTDN 170 (264)
T ss_dssp --SSSEEEEEETTTTEEEEEEE----SS----S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-------EET
T ss_pred --cCCeEEEEccccceEEEEEe---cCC----cceEEE--cCCCEEEEECCccceEEECCcccceEEEEE------EEEC
Confidence 77899999999887766653 222 334555 467778777667789999988766555442 1111
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc------------c---cCceeEEEEeCCCCEEEEEE
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE------------T---LTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~------------~---~~~v~~~~~s~dg~~l~s~~ 668 (762)
...-..++.+.|- +|...|=.- ...|...|..+|+....+.- + .+-.+.+++.|....|...|
T Consensus 171 g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 171 GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 1223456778885 676666554 77888999999998876521 0 12378999999776666655
Q ss_pred c
Q 040987 669 W 669 (762)
Q Consensus 669 ~ 669 (762)
.
T Consensus 250 K 250 (264)
T PF05096_consen 250 K 250 (264)
T ss_dssp T
T ss_pred C
Confidence 4
No 378
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.042 Score=51.44 Aligned_cols=182 Identities=13% Similarity=0.020 Sum_probs=110.5
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC--CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 349 WHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI--GSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 349 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
+.+-...+.++.|+|+.+.|++......-.++=...|+.+..... -.....+.+..+|++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345555699999999999999888877766765566776433222 234556778788888887777888888887765
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
.....+...+.+.......+.....++|+|..+.|.++-+..-+.+|.....................+-.-..+..+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 43333322222221111223577899999999999998888878888776433111111110000000001345777888
Q ss_pred ecCC-CeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 507 SQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 507 sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
++.. .+++.+. +++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~---------ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSD---------ESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEec---------CCceEEEEecCCC
Confidence 8754 4555554 5666666666544
No 379
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.29 E-value=0.099 Score=52.59 Aligned_cols=54 Identities=13% Similarity=0.288 Sum_probs=37.3
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheee---eeeeccCcCeEEEEEcCC
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMR---KITLHHTKKLTVLAFHPT 292 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~ 292 (762)
.++.|+|.|||+++++-..|.|++++....... .+. .+..........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~--~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKT--PVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECE--EEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcc--eecccccccccccCCcccceeccc
Confidence 467899999999999888999999993333211 111 223345667899999994
No 380
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.26 E-value=0.13 Score=51.53 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=106.4
Q ss_pred CCCEEEEEe-cCCeEEEEecCCCce----eccCCC-----C---CCeEEEEeCCCCCeEEEEec------CCcEEEEEcC
Q 040987 364 DGAYLYSGG-KEGVLVVWQLDTGKK----KFLPRI-----G---SPLLYFTESPDPSLSSISCA------DNQVHLLKMP 424 (762)
Q Consensus 364 ~g~~l~s~~-~dg~i~~wd~~~~~~----~~~~~~-----~---~~v~~~~~s~~~~~l~~~~~------d~~i~i~d~~ 424 (762)
+.++|+..+ ..+.|++.|+.+... ....+. . .....+-.-|+|+.++++-. .|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 668899999885332 111110 0 11223334578888877532 2468899999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee--------------------cCceEEEEEcCCCCceeeE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA--------------------ENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~ 484 (762)
+.+............ ..-..+-|.|..+.+++.. ...++.+||+.+.+.+..+
T Consensus 166 tf~v~g~We~~~~~~-------~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQ-------PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp T--EEEE--SB-TT-------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred cccccceeccCCCCC-------CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 888887776543221 3446788888888777753 1358999999999888887
Q ss_pred EeecccccCCCCcceeEEEEEEec--CCCeEEEEeeeccccCCCceeEEEEEEe-cCCCce----eEEEEEeecCCC---
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVDIKLAEEGIGSLVCLKFWVS-GTQNKE----FTLSTIVYEPHR--- 554 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~d~~i~iwd~-~~~~~~----~~~~~~~~~~h~--- 554 (762)
..... ...+..+.|.. +..+=.+++. -..+|..|-- +.++-. ..+......+-.
T Consensus 239 dLg~~--------g~~pLEvRflH~P~~~~gFvg~a--------Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 239 DLGEE--------GQMPLEVRFLHDPDANYGFVGCA--------LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp ES-TT--------EEEEEEEEE-SSTT--EEEEEEE----------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred ecCCC--------CCceEEEEecCCCCccceEEEEe--------ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 76533 23455666644 4444444332 3344544443 333211 111110000000
Q ss_pred --------CCceEEEEEcCCCCeEEEEeC-CCcEEEEEcccccccccccCCcee---------eeeecccCCCCeEEEEE
Q 040987 555 --------DAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKDLQSSGWS---------CHAVGSYKKKAMTAAAF 616 (762)
Q Consensus 555 --------~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~ 616 (762)
..-|+.+..|.|.++|..++. .|.++.||+......+..- ..+. +......-.+...-+..
T Consensus 303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g-qv~lGG~~~~~~~~~v~g~~l~GgPqMvql 381 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG-QVFLGGSIRKGDHPVVKGKRLRGGPQMVQL 381 (461)
T ss_dssp GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE-EEE-BTTTT-B--TTS------S----EEE
T ss_pred cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe-EEEECcEeccCCCccccccccCCCCCeEEE
Confidence 234799999999999988775 7899999998755433221 0000 00000011234466788
Q ss_pred cCCCcEEEEE
Q 040987 617 SADGSVLAVA 626 (762)
Q Consensus 617 s~dg~~la~~ 626 (762)
|-||+.|.+.
T Consensus 382 S~DGkRlYvT 391 (461)
T PF05694_consen 382 SLDGKRLYVT 391 (461)
T ss_dssp -TTSSEEEEE
T ss_pred ccCCeEEEEE
Confidence 8888877654
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.26 E-value=0.014 Score=59.19 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=63.8
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCce-eEEEEeCC-----------------
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPI-MNMSFVGS----------------- 660 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v-~~~~~s~d----------------- 660 (762)
+...+......+.+++.+|++++.|+.+ -|+|.++|+.++..++..+|-++.- .-+....+
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 3334445567789999999999888876 5999999999998888887765541 11111111
Q ss_pred CCEE-EEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 661 SEYL-VATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 661 g~~l-~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
..+| +-+-..|. |.||++.+|..+..+....
T Consensus 379 ~l~LvIyaprRg~--lEvW~~~~g~Rv~a~~v~k 410 (415)
T PF14655_consen 379 ALFLVIYAPRRGI--LEVWSMRQGPRVAAFNVGK 410 (415)
T ss_pred eEEEEEEeccCCe--EEEEecCCCCEEEEEEeCC
Confidence 1122 33444555 9999999999998887654
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.21 E-value=0.25 Score=48.20 Aligned_cols=283 Identities=14% Similarity=0.098 Sum_probs=126.1
Q ss_pred ccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheee-eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 233 AEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMR-KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.-...+..|.|..+.+-.+++..+.| +...++....+... .......-...++.|..+ ..+++| ..+ +.+...+
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESS
T ss_pred CCCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecC
Confidence 34557889999977777788877753 44433332111110 000011224567777654 344444 445 4444455
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-e-c
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-K-F 389 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~-~ 389 (762)
.++..... ..-..-......+....++..++ ++..|.|+.=. +.|+. . .
T Consensus 89 gG~tW~~v---------------------------~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~ 139 (302)
T PF14870_consen 89 GGKTWERV---------------------------PLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAV 139 (302)
T ss_dssp TTSS-EE-------------------------------TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEE
T ss_pred CCCCcEEe---------------------------ecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEc
Confidence 55443311 00001112223343334443333 34445543322 22322 2 2
Q ss_pred cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC--ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS--MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.......+..+..++||++++++.......-||.-. .++..... . ..+..+.|.|++.+.+.+ +.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~--~----------~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS--S----------RRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S--S----------S-EEEEEE-TTS-EEEEE-TT
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc--c----------ceehhceecCCCCEEEEe-CC
Confidence 334446788888999999999886555566776543 22222221 1 689999999998766654 88
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
|.|++=+.... ......... +.......+..+++.+++...|+++ .+.+ +...+.++. .+...
T Consensus 207 g~~~~s~~~~~--~~~w~~~~~---~~~~~~~~~ld~a~~~~~~~wa~gg----------~G~l-~~S~DgGkt-W~~~~ 269 (302)
T PF14870_consen 207 GQIQFSDDPDD--GETWSEPII---PIKTNGYGILDLAYRPPNEIWAVGG----------SGTL-LVSTDGGKT-WQKDR 269 (302)
T ss_dssp TEEEEEE-TTE--EEEE---B----TTSS--S-EEEEEESSSS-EEEEES----------TT-E-EEESSTTSS--EE-G
T ss_pred cEEEEccCCCC--ccccccccC---CcccCceeeEEEEecCCCCEEEEeC----------CccE-EEeCCCCcc-ceECc
Confidence 88888772221 112211111 1111144589999999998888875 3322 333343432 22211
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
. ...- ...+..+.|.++.+-++.| .+|.+.-|
T Consensus 270 ~-~~~~-~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 270 V-GENV-PSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp G-GTTS-SS---EEEEEETTEEEEE--STTEEEEE
T ss_pred c-ccCC-CCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 0 0122 4567888887766666655 57766544
No 383
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0023 Score=65.46 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=71.3
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeE-EEEEcCCCcEEEEEc-CCeEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT-AAAFSADGSVLAVAA-ETVIT 632 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~dg~~la~~~-d~~i~ 632 (762)
...+.-+.|+|.-.++|++..+|.+.+..++ .+.+..+ +.++..++ +++|.|||++||+|- ||+|+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-----------p~p~~~v~~sL~W~~DGkllaVg~kdG~I~ 87 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-----------PIPGENVTASLCWRPDGKLLAVGFKDGTIR 87 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-----------cCCCCccceeeeecCCCCEEEEEecCCeEE
Confidence 4467889999999999999999999888876 3332222 23566666 999999999999997 99999
Q ss_pred EEeCCCCeEEEEe-ccccCceeEEEEeC
Q 040987 633 LWDPDRNVLVAVI-GETLTPIMNMSFVG 659 (762)
Q Consensus 633 iwd~~~~~~~~~l-~~~~~~v~~~~~s~ 659 (762)
+.|+.++..+... ......|.++-|++
T Consensus 88 L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 88 LHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEccCCCceeccccccccchheeeccc
Confidence 9999998776552 22345577777763
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.13 E-value=0.2 Score=48.10 Aligned_cols=190 Identities=14% Similarity=0.055 Sum_probs=104.0
Q ss_pred ceeeEEEeCCCCEEEEee---cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 448 LCRDIAFNHDGGLVALRA---ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.+.+.+++++++.++... ....++++.. +........ ...+....|++++...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-----------g~~l~~PS~d~~g~~W~v~~------- 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-----------GGSLTRPSWDPDGWVWTVDD------- 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-----------CCccccccccCCCCEEEEEc-------
Confidence 578899999999887766 2334555543 333322221 33577889999987777665
Q ss_pred CCceeEEEEEE-ecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe---CCCcEEEEEccccccc--ccccCCc
Q 040987 525 IGSLVCLKFWV-SGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS---YGGDFKVWICNDELQQ--KDLQSSG 597 (762)
Q Consensus 525 ~~~d~~i~iwd-~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~---~dg~i~iwd~~~~~~~--~~~~~~~ 597 (762)
.+...+++. ...+.. ...+.. ..- ...|+++.+||||..+|... .++.|.+--+.....- ..+
T Consensus 85 --~~~~~~~~~~~~~g~~~~~~v~~---~~~-~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l---- 154 (253)
T PF10647_consen 85 --GSGGVRVVRDSASGTGEPVEVDW---PGL-RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL---- 154 (253)
T ss_pred --CCCceEEEEecCCCcceeEEecc---ccc-CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee----
Confidence 445555553 223322 112211 111 22899999999999988766 2466776654322111 111
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEE-EeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEE
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITL-WDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~i-wd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~ 668 (762)
-............++.++|.+++.+++.+. ++.+.. .....+. ...+..-...+.-++...+...++...
T Consensus 155 ~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~-~~~l~~~~~~~~v~a~~~~~~~~~~t~ 227 (253)
T PF10647_consen 155 TGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP-STPLPSVNLGVPVVAVAASPSTVYVTD 227 (253)
T ss_pred ccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCc-ccccCCCCCCcceEEeeCCCcEEEEEC
Confidence 001122223356889999999999888775 554444 4444332 222222222333344444444444443
No 385
>PRK10115 protease 2; Provisional
Probab=97.12 E-value=0.48 Score=52.96 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=48.1
Q ss_pred CceeecCCCEEEEEeC------CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC-----CeEE
Q 040987 78 PPAFSNDVKRLLVCTS------NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD-----GTIK 146 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~------~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d-----~~i~ 146 (762)
.+.+||||++||.+.| ..|+|.|+.+|+.+...-.... ..++|++|++ .++++...+ ..|.
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~------~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSW------TFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCC------EEEEEEecCCCCCCCEEE
Confidence 4889999999999974 3899999998875433222222 4599999995 444554332 4678
Q ss_pred EEeCCCc
Q 040987 147 YWDFSVP 153 (762)
Q Consensus 147 vWd~~~~ 153 (762)
.+++.++
T Consensus 203 ~h~lgt~ 209 (686)
T PRK10115 203 RHTIGTP 209 (686)
T ss_pred EEECCCC
Confidence 8888887
No 386
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.10 E-value=0.069 Score=58.71 Aligned_cols=144 Identities=6% Similarity=0.015 Sum_probs=98.5
Q ss_pred EEeeecCCeEEEEeCCCcceEEEEEecc--ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcc
Q 040987 136 CWTASLDGTIKYWDFSVPELLKTIDVKF--SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMN 213 (762)
Q Consensus 136 l~s~s~d~~i~vWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 213 (762)
|........|.--|+..|+.+...+.+. ++..++-..-+.. ..... . ..|-.+
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aq---lt~e~----t------------------flGls~ 551 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQ---LTNEQ----T------------------FLGLSD 551 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccc---cCCCc----e------------------EEEECC
Confidence 3444556889999999999999998887 3444421000000 00000 1 446688
Q ss_pred ccEEEEecCCcc--ccc--eeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEE
Q 040987 214 GRICKCNLTESR--LAG--GVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAF 289 (762)
Q Consensus 214 ~~i~iwd~~~~~--~~~--~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 289 (762)
+.+..||.+-.. ++. ...........|++-+.+|.+++++.+|.|++||--... .+..+.+-..+|..|..
T Consensus 552 n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~-----AKT~lp~lG~pI~~iDv 626 (794)
T PF08553_consen 552 NSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKR-----AKTALPGLGDPIIGIDV 626 (794)
T ss_pred CceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchh-----hhhcCCCCCCCeeEEEe
Confidence 899999998643 221 112234557899999999988888999999999954433 33666677899999999
Q ss_pred cCCCcEEEEeecCCeEEEEec
Q 040987 290 HPTQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 290 sp~~~~l~~~~~dg~v~vw~~ 310 (762)
+.||++|++.+ +..+.+++.
T Consensus 627 t~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 627 TADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCcEEEEee-cceEEEEEE
Confidence 99999988665 456778775
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.07 E-value=0.24 Score=50.48 Aligned_cols=87 Identities=8% Similarity=-0.023 Sum_probs=55.3
Q ss_pred eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC-CCCCC-eEEEEeC-C---------------C-CC-
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP-RIGSP-LLYFTES-P---------------D-PS- 407 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~-v~~~~~s-~---------------~-~~- 407 (762)
.+......+.+++.+|++++.++...-|.|.++|+.++.....- +..+. +.-+... . . ..
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 34445567889999999988888777799999999988764322 22211 1111100 0 0 11
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+++.+...|.|.||.+++|..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 233455688999999998877766543
No 388
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.06 E-value=0.0017 Score=40.81 Aligned_cols=39 Identities=18% Similarity=0.468 Sum_probs=34.3
Q ss_pred CeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 639 NVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 639 ~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
++++..+..|...|.++.|.+++.++++++.|+. +++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~--~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT--IKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCe--EEEcC
Confidence 4566677788899999999999999999999998 99996
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.02 E-value=0.28 Score=47.14 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=88.8
Q ss_pred CCceEEEECCCCCEEEEEe--C--CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEe-c
Q 040987 236 KEPQVITISSSGKYFGIRK--Q--RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWR-G 310 (762)
Q Consensus 236 ~~v~~~~~spdg~~la~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~-~ 310 (762)
..+...++++||+.+|+-. + ..+.++....... ... ....+....|++++...+....+...+++. .
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------PVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------eec--cCCccccccccCCCCEEEEEcCCCceEEEEec
Confidence 3788999999999987543 4 4455554433221 222 233788899999988777766666666664 2
Q ss_pred cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe---cCCeEEEEecC---C
Q 040987 311 FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG---KEGVLVVWQLD---T 384 (762)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~dg~i~~wd~~---~ 384 (762)
..+.... .. .....-...|..+.+||||.+++... .++.|.+--+. .
T Consensus 96 ~~g~~~~--------------------------~~-v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~ 148 (253)
T PF10647_consen 96 ASGTGEP--------------------------VE-VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD 148 (253)
T ss_pred CCCccee--------------------------EE-ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC
Confidence 2221110 00 01111111799999999999988765 34677766443 2
Q ss_pred Cce------ec-cCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 385 GKK------KF-LPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 385 ~~~------~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
+.. .. .......+..+.|.+++.+++.+...+
T Consensus 149 g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 149 GVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 211 11 123346789999999998887765544
No 390
>PRK10115 protease 2; Provisional
Probab=96.80 E-value=1.3 Score=49.63 Aligned_cols=111 Identities=8% Similarity=-0.065 Sum_probs=68.2
Q ss_pred ceeEEEEecCCCEEEEEec-----CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC------CcEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGK-----EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD------NQVHLLKM 423 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~-----dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~i~d~ 423 (762)
.+..+.|+|||++|+.+.. ...|++.|+.+++..... ....-..++|++|++.|+....+ ..++.+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 4667889999998886532 246889999888632211 11111569999999887776542 35777888
Q ss_pred CCc--eEEEEEccCCCCCCCCCcccCcee-eEEEeCCCCEEEEeec---CceEEEEEcC
Q 040987 424 PSM--EIIRSISGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRAE---NYCIHFYSLL 476 (762)
Q Consensus 424 ~~~--~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---dg~i~i~d~~ 476 (762)
.++ +....+.... .... ....+.|+++++..+. ++.+.+++..
T Consensus 207 gt~~~~d~lv~~e~~----------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 207 GTPASQDELVYEEKD----------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCChhHCeEEEeeCC----------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 876 3333444322 1122 3344558887765543 3578888853
No 391
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0058 Score=62.67 Aligned_cols=79 Identities=6% Similarity=0.032 Sum_probs=70.1
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee-EEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM-NMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~-~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
...+..+.|+|.-.++|.+. +|.|.+..++ .+.+.++.-|..+++ +++|.|||+.||.|-.||+ |++-|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~--I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT--IRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe--EEEEEccCCCc
Confidence 45678899999999999998 9999999998 777778876777777 9999999999999999998 99999999988
Q ss_pred eeEE
Q 040987 686 SWSY 689 (762)
Q Consensus 686 ~~~~ 689 (762)
+.++
T Consensus 97 l~~~ 100 (665)
T KOG4640|consen 97 LVSF 100 (665)
T ss_pred eecc
Confidence 7763
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.73 E-value=0.53 Score=44.32 Aligned_cols=197 Identities=12% Similarity=-0.003 Sum_probs=117.1
Q ss_pred CcCeEEEEEcCCCcEEEEeecCC--eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTG--RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
..-...+.|..+|.++-+.+.-| .|+.+|+.+++..... .+.. .---..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~----------------------------~l~~-~~FgEG 94 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV----------------------------PLPP-RYFGEG 94 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE----------------------------E-TT-T--EEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE----------------------------ECCc-ccccee
Confidence 33456788877888777776655 7999999888654311 1111 001122
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC-
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL- 437 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~- 437 (762)
++.. +++...-.-.++...+||..+.+..........=..++ .|++.|+.+.....++.+|..+.+..+.+.....
T Consensus 95 it~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g 171 (264)
T PF05096_consen 95 ITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG 171 (264)
T ss_dssp EEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT
T ss_pred EEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC
Confidence 3333 22333344567899999999887754444444455555 6788888888888999999998877776644321
Q ss_pred -CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeeccccc-----CCCCcceeEEEEEEecCCC
Q 040987 438 -PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ-----PGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 438 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~sp~g~ 511 (762)
++ ..+..+.+- +|...|-.-....|...|..+|+....+....-... .......-.+.+|+.|+.+
T Consensus 172 ~pv-------~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 172 RPV-------SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp EE----------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred EEC-------CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 11 355667775 677777777788899999999988776654321110 0001145689999999877
Q ss_pred eEEEEe
Q 040987 512 LMSTVD 517 (762)
Q Consensus 512 ~l~~~~ 517 (762)
.|...+
T Consensus 244 ~l~vTG 249 (264)
T PF05096_consen 244 RLFVTG 249 (264)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 665554
No 393
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.70 E-value=0.16 Score=40.33 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=27.1
Q ss_pred eeEEEE---eCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceE
Q 040987 117 VTTVIV---VPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIF 166 (762)
Q Consensus 117 V~~v~~---s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~ 166 (762)
|+++++ ..||+ ..|+.||.|..||||+= .+.+..+.....+.
T Consensus 2 V~al~~~d~d~dg~------~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~ 46 (111)
T PF14783_consen 2 VTALCLFDFDGDGE------NELLVGSDDFEIRVFKG--DEIVAEITETDKVT 46 (111)
T ss_pred eeEEEEEecCCCCc------ceEEEecCCcEEEEEeC--CcEEEEEecccceE
Confidence 455544 45665 57779999999999983 35555555443333
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.038 Score=55.75 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=95.1
Q ss_pred CCCCEEE-EeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe--E-----EEEeeeccccCCCc
Q 040987 456 HDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL--M-----STVDIKLAEEGIGS 527 (762)
Q Consensus 456 ~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~--l-----~~~~~~~~~~~~~~ 527 (762)
.+.++|+ .+.....++-.|++.|+.+.+.... ..|.-+.+.|+.+. | +.|- .
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~-----------~di~mv~~t~d~K~~Ql~~e~TlvGL---------s 402 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE-----------DDINMVDITPDFKFAQLTSEQTLVGL---------S 402 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeecc-----------CCcceeeccCCcchhcccccccEEee---------c
Confidence 3444433 3444567888999999988887663 33667777776542 1 1222 5
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCC---CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHR---DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~---~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
+..|.-||++-...- .+.- .++|. .....|.+-..+| ++|+||.+|.|++||-- +...... +
T Consensus 403 ~n~vfriDpRv~~~~-kl~~--~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTA----------l 467 (644)
T KOG2395|consen 403 DNSVFRIDPRVQGKN-KLAV--VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTA----------L 467 (644)
T ss_pred CCceEEecccccCcc-eeee--eeccccccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhc----------c
Confidence 678888998744331 1110 11220 3355666666555 78999999999999983 3333222 3
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
++-..+|..+..+.||++|+...+..+.+.++
T Consensus 468 PgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred cccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 45688999999999999998888888887775
No 395
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.67 E-value=0.17 Score=40.12 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=67.0
Q ss_pred eeEEEEec---CC-CEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 356 VSVLIFSS---DG-AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 356 v~~~~~s~---~g-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
|+++++.. || +.|+.|+.|..|++|+-+ +........+.+.+++-... ..++.+..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence 55666643 33 679999999999999854 44555566677888887666 568888899999999864 23333
Q ss_pred EccCCCCCCCCCcccCceeeEEEeC-C--C-CEEEEeecCceEE
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNH-D--G-GLVALRAENYCIH 471 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~-~--~-~~l~~~~~dg~i~ 471 (762)
.+.. ..+.++++.. + | .-|++|-.+|.|-
T Consensus 77 iKSK-----------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK-----------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC-----------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3332 2345554433 2 2 2588888888764
No 396
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.54 E-value=1.1 Score=45.35 Aligned_cols=201 Identities=13% Similarity=0.058 Sum_probs=92.5
Q ss_pred EEEEecCCCEEEEEe--c----CCeEEEEecCCCceeccCCC----CCCeEEEEeCCCCCeEEEEe--------------
Q 040987 358 VLIFSSDGAYLYSGG--K----EGVLVVWQLDTGKKKFLPRI----GSPLLYFTESPDPSLSSISC-------------- 413 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~--~----dg~i~~wd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~-------------- 413 (762)
.+..-|+|+.++++= . -|.+.+.|-++.+....-.. ..--..+-|.|..+.++++.
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 344457888887742 2 25688888887665422111 22345566778777777653
Q ss_pred ------cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC--CCEEEEe-ecCceEEEEEc-CCCCceee
Q 040987 414 ------ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD--GGLVALR-AENYCIHFYSL-LDDRGISE 483 (762)
Q Consensus 414 ------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~-~~dg~i~i~d~-~~~~~~~~ 483 (762)
....+.+||..+.+.++++.-.... .....+.|..+ ..+=+++ .-..+|..|-- ..++-..+
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g--------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG--------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE 285 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTE--------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCC--------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee
Confidence 2357999999999999998754310 23456666554 3332222 23444554433 33321111
Q ss_pred E--Eeecccc---------cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC
Q 040987 484 V--QVCERNH---------QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP 552 (762)
Q Consensus 484 ~--~~~~~~~---------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 552 (762)
. ....... .+......-++.+.+|.|.++|..++. ..|.|+.||+..............-+
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W--------~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW--------LHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET--------TTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc--------cCCcEEEEecCCCCCCcEEeEEEECc
Confidence 1 1111100 000011245899999999999999886 78999999999876655443321111
Q ss_pred C------C-------CCceEEEEEcCCCCeEEEEe
Q 040987 553 H------R-------DAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 553 h------~-------~~~v~~~~~spd~~~l~~~~ 574 (762)
- . .+...-+..|-||++|...+
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 0 0 12335677888888877654
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.45 E-value=0.14 Score=55.57 Aligned_cols=238 Identities=11% Similarity=0.069 Sum_probs=117.1
Q ss_pred eEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecC------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCc
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCAD------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGL 448 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (762)
.+..||..+++...+...+.+... ....-++..+++|+.+ ..+..||..+..-. .+..... ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~---------~R 342 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIK---------NR 342 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcc---------hh
Confidence 577889888877655444332211 1122366677777643 34778887765421 1111110 11
Q ss_pred eeeEEEeCCCCEEEEeecCc-----eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 449 CRDIAFNHDGGLVALRAENY-----CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 449 v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
....+..-+++..+.|+.++ .+..||..+++-.. +..... + ..... +..-+|+..+.|+.+....
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~---~----r~~~~--~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPI---A----LSSYG--MCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCc---c----ccccc--EEEECCEEEEEeCCCcccc
Confidence 11122234677778887653 47889987653111 000000 0 11111 1223677777776321000
Q ss_pred --------------CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC------cEEEEE
Q 040987 524 --------------GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG------DFKVWI 583 (762)
Q Consensus 524 --------------~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg------~i~iwd 583 (762)
....-..+..||..+.+-... .. ...+. ... +++ .-++++.+.|+.++ .+..||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~-m~~~r--~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Yd 486 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PN-FWTGT--IRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYN 486 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeec-CC-CCccc--ccC-cEE-EECCEEEEEeCCCCCCccceeEEEec
Confidence 000124678888877643211 10 00111 111 122 23567777777542 356677
Q ss_pred ccc-ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC--eEEEEeCCCCeEEEEeccccC
Q 040987 584 CND-ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET--VITLWDPDRNVLVAVIGETLT 650 (762)
Q Consensus 584 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~--~i~iwd~~~~~~~~~l~~~~~ 650 (762)
..+ . .|................++ +|++.++|+ ++ .+..||..+.+-......|..
T Consensus 487 p~~~~---------~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 487 TNTYN---------GWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred CCCCC---------CeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 765 2 34333333322333333333 788888887 76 788899988876655554543
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.32 E-value=0.018 Score=51.62 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=71.3
Q ss_pred CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEE-EEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 567 RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA-AAFSADGSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
+.-+++|+.+|.|++|+........... . .....|.+ +.--.++.+..++. ||.|+.|++.-++.+..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~---------~-s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~ 139 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV---------C-SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY 139 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh---------h-cccccceeccccccccceeEEeccCCceeeeccccCceeee
Confidence 4568889999999999886221111110 0 01122222 22223444666666 99999999999999988
Q ss_pred ecccc-CceeEEEEeCCCCEEEEE--EcCCCCeEEEEECCCC
Q 040987 645 IGETL-TPIMNMSFVGSSEYLVAT--SWGSKPQLSVWNMSKL 683 (762)
Q Consensus 645 l~~~~-~~v~~~~~s~dg~~l~s~--~~d~~~~v~vwd~~~~ 683 (762)
..+|. .++..+..+..+++|+++ |.|.. ++.|+++.-
T Consensus 140 ~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~--~k~W~ve~~ 179 (238)
T KOG2444|consen 140 VGQHNFESGEELIVVGSDEFLKIADTSHDRV--LKKWNVEKI 179 (238)
T ss_pred eccccCCCcceeEEecCCceEEeeccccchh--hhhcchhhh
Confidence 88888 667777777778888888 78877 888888753
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.17 E-value=0.72 Score=50.12 Aligned_cols=237 Identities=10% Similarity=0.073 Sum_probs=123.7
Q ss_pred CCCCeEEEEecCC------cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------ceEE
Q 040987 404 PDPSLSSISCADN------QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIH 471 (762)
Q Consensus 404 ~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~ 471 (762)
..+..+++|+..+ .+..||..++.-.....-.. ...-.++++. ++...++|+.+ ..+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~---------~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS---------PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc---------ccccccEEEE-CCEEEEEccccCCCcccceEE
Confidence 3455667776653 57788887763332211111 0122334444 45777888887 3677
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
.||..+++=.. ..... ......-.-.-+|...|+|+.+ +...-.++..||..+.+-...-... .
T Consensus 353 ~YD~~~~~W~~--~a~M~--------~~R~~~~v~~l~g~iYavGG~d----g~~~l~svE~YDp~~~~W~~va~m~--~ 416 (571)
T KOG4441|consen 353 RYDPRTNQWTP--VAPMN--------TKRSDFGVAVLDGKLYAVGGFD----GEKSLNSVECYDPVTNKWTPVAPML--T 416 (571)
T ss_pred EecCCCCceec--cCCcc--------CccccceeEEECCEEEEEeccc----cccccccEEEecCCCCcccccCCCC--c
Confidence 88887765211 11111 1111111223367778888743 3224457888998876543221100 0
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCC------cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGG------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
. ......+ .-+|++.++|+.++ ++..||..+..-.... .......... .-.-++++.++
T Consensus 417 -~-r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---------~M~~~R~~~g--~a~~~~~iYvv 481 (571)
T KOG4441|consen 417 -R-RSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---------PMNTRRSGFG--VAVLNGKIYVV 481 (571)
T ss_pred -c-eeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---------Ccccccccce--EEEECCEEEEE
Confidence 0 1111222 22688888888654 4677887765433222 2222222222 22237778888
Q ss_pred Ec-CC-----eEEEEeCCCCeEEEE--eccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCC
Q 040987 626 AA-ET-----VITLWDPDRNVLVAV--IGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKL 683 (762)
Q Consensus 626 ~~-d~-----~i~iwd~~~~~~~~~--l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~ 683 (762)
|+ |+ +|..||..+.+.... +......+....+ +++..+.++.|+. .+|..||-.+.
T Consensus 482 GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 482 GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 87 54 478899888754433 3323333322222 6678888888874 24666665554
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.13 E-value=1.3 Score=42.21 Aligned_cols=234 Identities=12% Similarity=0.092 Sum_probs=123.5
Q ss_pred eEEEEeCCCCCeEEEEecCCcEEEEEcCC------c-eEEEEEccCCCCCCCCCcccCceeeEEEeCCCC----------
Q 040987 397 LLYFTESPDPSLSSISCADNQVHLLKMPS------M-EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG---------- 459 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~d~~i~i~d~~~------~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---------- 459 (762)
-..++++|.+.+-++....+...+||... . .+.-.+..... .......+.+.|+....
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-----~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-----LAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-----CCCCCCccEEEEeCCCceEEcCCCccc
Confidence 46789999988877777788899999861 1 12222221110 00113455666654322
Q ss_pred --EEEEeecCceEEEEEcCCCCc---eeeEEeecccccCCCCcceeEEEEEEec--CCCeEEEEeeeccccCCCceeEEE
Q 040987 460 --LVALRAENYCIHFYSLLDDRG---ISEVQVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 460 --~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
.++.+++||+|.-|...-+.. ...+... ... ....-..+++.. .+.+|..+.. ..++|.
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d-~s~-----~gavYkGLAi~~~~~~~~LYaadF--------~~g~ID 165 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVD-ASQ-----QGNVYKGLAVGPTGGGDYLYAANF--------RQGRID 165 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEc-cCC-----CcceeeeeEEeecCCCceEEEecc--------CCCceE
Confidence 367788999999998654433 1111111 100 022334555554 3677777765 678999
Q ss_pred EEEecCCCceeE--EEEEeec-CCCCCceEE---------EEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceee
Q 040987 533 FWVSGTQNKEFT--LSTIVYE-PHRDAGISA---------VAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSC 600 (762)
Q Consensus 533 iwd~~~~~~~~~--~~~~~~~-~h~~~~v~~---------~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 600 (762)
+||-.-...... +...... +-..-.|.. ..-.++++.=+.+..-|.|-+||....-..+..
T Consensus 166 VFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~a------- 238 (336)
T TIGR03118 166 VFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVA------- 238 (336)
T ss_pred EecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEec-------
Confidence 998653322100 0000000 000001111 111112211222223367888888654333221
Q ss_pred eeecccCCCCeEEEEEcC------CCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCc------eeEEEEeC
Q 040987 601 HAVGSYKKKAMTAAAFSA------DGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTP------IMNMSFVG 659 (762)
Q Consensus 601 ~~~~~~~~~~i~~~~~s~------dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~------v~~~~~s~ 659 (762)
..+.-...+.|+..| .|.+|+--. ||+|..+|..+|+.+..+....+. .+.+.|-.
T Consensus 239 ---s~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 239 ---SSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ---cCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 112234456677655 344554433 999999999999988888654433 67788866
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.24 Score=50.30 Aligned_cols=147 Identities=7% Similarity=-0.002 Sum_probs=99.6
Q ss_pred eEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccc
Q 040987 135 YCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNG 214 (762)
Q Consensus 135 ~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 214 (762)
+|.++.....+.--|++.|+.+.+.+.+..+.-+.+ .++....++.+--. ..|-+++
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~--------t~d~K~~Ql~~e~T---------------lvGLs~n 404 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDI--------TPDFKFAQLTSEQT---------------LVGLSDN 404 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeec--------cCCcchhccccccc---------------EEeecCC
Confidence 455666677888899999999998887765333333 11222111110000 5577899
Q ss_pred cEEEEecCCccc-c----ceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEE
Q 040987 215 RICKCNLTESRL-A----GGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAF 289 (762)
Q Consensus 215 ~i~iwd~~~~~~-~----~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 289 (762)
.|.-||.+-... . +.....-.....|.+-..+|..++++.+|.|++||--.... +..+.+-..+|..+..
T Consensus 405 ~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~A-----KTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 405 SVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRA-----KTALPGLGDAIKHVDV 479 (644)
T ss_pred ceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhh-----hhcccccCCceeeEEe
Confidence 999999874332 1 11112234467888888999888889999999999844333 3677788899999999
Q ss_pred cCCCcEEEEeecCCeEEEEec
Q 040987 290 HPTQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 290 sp~~~~l~~~~~dg~v~vw~~ 310 (762)
+.||++++..+ +..+.+.+.
T Consensus 480 tadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 480 TADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccCcEEEEec-ccEEEEEEE
Confidence 99999887654 556777765
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.12 E-value=0.017 Score=37.88 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=31.5
Q ss_pred cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 649 LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 649 ~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
...|..++|+|...+||.++.||. |.++.+ +++.+|
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~--v~v~Rl-~~qriw 46 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE--VLVYRL-NWQRIW 46 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe--EEEEEC-CCcCcc
Confidence 346999999999999999999998 999999 676655
No 403
>PHA02713 hypothetical protein; Provisional
Probab=96.11 E-value=0.32 Score=52.92 Aligned_cols=92 Identities=8% Similarity=0.004 Sum_probs=50.5
Q ss_pred eEEEEecCCCceeccCCCCCC-eEEEEeCCCCCeEEEEecC------CcEEEEEcCC-ceE--EEEEccCCCCCCCCCcc
Q 040987 376 VLVVWQLDTGKKKFLPRIGSP-LLYFTESPDPSLSSISCAD------NQVHLLKMPS-MEI--IRSISGIKLPCPLPEEY 445 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d------~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~ 445 (762)
.+..||..+.+.........+ ....+..-+++..+.|+.+ ..+..||..+ .+- +..+....
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--------- 503 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--------- 503 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc---------
Confidence 578899888877554443221 1111223356666777653 2367788876 332 22222111
Q ss_pred cCceeeEEEeCCCCEEEEeecCc--eEEEEEcCCCC
Q 040987 446 KGLCRDIAFNHDGGLVALRAENY--CIHFYSLLDDR 479 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~ 479 (762)
.. .+++ .-+++..++|+.++ .+..||..+++
T Consensus 504 -~~-~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 504 -SA-LHTI-LHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred -cc-ceeE-EECCEEEEEeeecceeehhhcCccccc
Confidence 11 1222 22678888998887 67777777653
No 404
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=1.3 Score=41.77 Aligned_cols=278 Identities=9% Similarity=0.022 Sum_probs=148.3
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc---eEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI-GSPLLYFTESPDPSLSSISCADNQVHLLKMPSM---EII 429 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~---~~~ 429 (762)
+-+..+.++ +++.+.+..+.-+++.|+.+...-.+... +..=..-.+.-.|++..++..+..+.++|+.+. .+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 345566775 45777777778899999988665332221 111222334456788888887777888888763 223
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
....... +....+++| |++-..+..|+-+.+.|+........+..... ...+..+..+++
T Consensus 165 grya~~~----------~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~--------g~g~~sv~vsdn 224 (370)
T COG5276 165 GRYALPG----------GDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT--------GPGTYSVSVSDN 224 (370)
T ss_pred eeeccCC----------CCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec--------CCceEEEEecCC
Confidence 3333222 233566666 55666677888899999987765443332211 335777777777
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
--+++... .-+.+-|..+.+.+..+... +......++.+..+ +++......+.-+.+-|+.+...
T Consensus 225 r~y~vvy~-----------egvlivd~s~~ssp~~~gsy--et~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~s 289 (370)
T COG5276 225 RAYLVVYD-----------EGVLIVDVSGPSSPTVFGSY--ETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPS 289 (370)
T ss_pred eeEEEEcc-----------cceEEEecCCCCCceEeecc--ccCCcccccceecc--cceeeeeccccCceeEeccCCCC
Confidence 77776654 35777777777665555432 11112233333443 55666666666677777765433
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
..... . .......-..+.. .|.++..+...+..+-+....+......+....+.+.+.+-+.+.+.+...
T Consensus 290 pfl~s------s--~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 290 PFLSS------S--LDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred Cchhc------c--ccCCCccccceEE--ecCeeEeccCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeec
Confidence 22210 0 0000001111221 223333333113333333332222222222222444444556667888877
Q ss_pred CCCCeEEEEEC
Q 040987 670 GSKPQLSVWNM 680 (762)
Q Consensus 670 d~~~~v~vwd~ 680 (762)
++. +.+|+.
T Consensus 360 ~~g--l~i~~~ 368 (370)
T COG5276 360 NGG--LSIIEY 368 (370)
T ss_pred CCC--EEEEEe
Confidence 776 888875
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.06 E-value=2.3 Score=44.38 Aligned_cols=153 Identities=10% Similarity=0.130 Sum_probs=88.6
Q ss_pred eeeccCCCceEEEECCCC-----CEEEEEeCCeEEEEEccCchhhhhe-eeeeeeccC----cCeEEEEEcCCCcEEEEe
Q 040987 230 VTLAEMKEPQVITISSSG-----KYFGIRKQRKLLIWKVPDVEAERVV-MRKITLHHT----KKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg-----~~la~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~----~~v~~~~~sp~~~~l~~~ 299 (762)
...+.-..|..+.|.|-+ .+||+-....|.||.+......... ......... ---..+.|+|....|++-
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence 345566788999999864 5788889999999998632221001 111111111 123468899999888876
Q ss_pred ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEE
Q 040987 300 DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLV 378 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~ 378 (762)
.....-.++++...... ....+ ...+.|.|.+|.+||++|+.+-. .=.-+
T Consensus 131 T~~dvSV~~sV~~d~sr----------------------------VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSy 181 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSR----------------------------VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSY 181 (671)
T ss_pred ecCceeEeeeeeeCCce----------------------------EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEE
Confidence 55544445555332111 01122 34567999999999998876543 34568
Q ss_pred EEecCCCcee-----ccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 379 VWQLDTGKKK-----FLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 379 ~wd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
+||-...... .....++.|.++.-.-| ..+|++
T Consensus 182 iWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sqVAva 219 (671)
T PF15390_consen 182 IWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQVAVA 219 (671)
T ss_pred EecCchhhhhhCCcceeecCCCceEEEEEecc-ceEEEE
Confidence 8986544321 23344556666654443 334444
No 406
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.035 Score=60.96 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=78.4
Q ss_pred CCCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
.+..++.|+..|.+...|..+.-. ..-.....+|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~-- 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV-- 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc--
Confidence 445688888889999888776432 2233445799999999999999999999999999999999999988776544
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
..+.-+.+..++..++++...|. +|.+
T Consensus 176 -----t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 -----TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -----ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 45555666666677777777775 4544
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.02 E-value=1.1 Score=40.54 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=84.1
Q ss_pred cccccCCceeecCCCEEEEEe-C---------CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT-S---------NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~-~---------~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
+++... -..+|+|++.+-.- + |.++.|-+ +..+..+...-+--+.++|+.+.+ ++-++-+.
T Consensus 108 knR~ND-gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K------~fY~iDsl 178 (310)
T KOG4499|consen 108 KNRLND-GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAK------KFYYIDSL 178 (310)
T ss_pred hccccc-CccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCc------EEEEEccC
Confidence 455554 77899999944322 2 34444432 222222333334456788888875 55667777
Q ss_pred CCeEEEEe--CCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 142 DGTIKYWD--FSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 142 d~~i~vWd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+-+|.-|| ..+|.... .=.++
T Consensus 179 n~~V~a~dyd~~tG~~sn---------------------------------------------------------r~~i~ 201 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSN---------------------------------------------------------RKVIF 201 (310)
T ss_pred ceEEeeeecCCCcccccC---------------------------------------------------------cceeE
Confidence 88888888 44554321 11234
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
|++..+.. .....-.+++..+|++.+ +-..++|...|..+++.+ ....-....|+|++|--
T Consensus 202 dlrk~~~~------e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L-----~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 202 DLRKSQPF------ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL-----LEIKLPTPQITSCCFGG 263 (310)
T ss_pred EeccCCCc------CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEE-----EEEEcCCCceEEEEecC
Confidence 44433222 122233455566777765 457899999999999865 33333477899999964
No 408
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.95 E-value=2.1 Score=43.11 Aligned_cols=265 Identities=14% Similarity=0.023 Sum_probs=123.4
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC----CCEEEEeecC----
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD----GGLVALRAEN---- 467 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d---- 467 (762)
....|+|.|||+++++ ...|.|++++ ..+.....+.... . .....+.....++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~-~--v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLP-E--VFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-T-T--TBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccc-c--ccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 3578999999877665 5699999999 4444312211111 0 01112357789999994 3333333321
Q ss_pred ----ceEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc----ccCCCceeEEEEEEecC
Q 040987 468 ----YCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA----EEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 468 ----g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~----~~~~~~d~~i~iwd~~~ 538 (762)
..|.-|....+ .........................++|.|||.+.++.+.... .+.....+.|.-.+...
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence 24444555443 1111111111110000011334567999999977666553322 11111234454445432
Q ss_pred CC------------ceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEE-eCCCcEEEEEcccccccc----c--------
Q 040987 539 QN------------KEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSS-SYGGDFKVWICNDELQQK----D-------- 592 (762)
Q Consensus 539 ~~------------~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~-~~dg~i~iwd~~~~~~~~----~-------- 592 (762)
.- ....+ -.++ . ....++|+|. |.++++= +.++.=.|--+..+..-- .
T Consensus 158 ~~p~dnP~~~~~~~~~~i~----A~Gl-R-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~ 231 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIY----AYGL-R-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGP 231 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEE----EE---S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS
T ss_pred cCCCCCccccCCCceEEEE----EeCC-C-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCC
Confidence 20 01111 1244 3 3457999998 6665542 223322332232222100 0
Q ss_pred -----ccCCce-eeeeecccCCCCeEEEEEcC-------CCcEEEEEc-CCeEEEEeCCCCeEEE----EeccccCceeE
Q 040987 593 -----LQSSGW-SCHAVGSYKKKAMTAAAFSA-------DGSVLAVAA-ETVITLWDPDRNVLVA----VIGETLTPIMN 654 (762)
Q Consensus 593 -----~~~~~~-~~~~~~~~~~~~i~~~~~s~-------dg~~la~~~-d~~i~iwd~~~~~~~~----~l~~~~~~v~~ 654 (762)
...... .+..... +...++.+.|-. .|.+++... .+.|....++.+..+. .+.....++..
T Consensus 232 ~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~ 310 (331)
T PF07995_consen 232 PIGDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRD 310 (331)
T ss_dssp -ECTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEE
T ss_pred ccccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceE
Confidence 000000 0111112 235666777754 445666555 7788888887553222 23334447999
Q ss_pred EEEeCCCCEEEEEEcCCC
Q 040987 655 MSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 655 ~~~s~dg~~l~s~~~d~~ 672 (762)
+++.|||.+.++...+|.
T Consensus 311 v~~~pDG~Lyv~~d~~G~ 328 (331)
T PF07995_consen 311 VAQGPDGALYVSDDSDGK 328 (331)
T ss_dssp EEEETTSEEEEEE-TTTT
T ss_pred EEEcCCCeEEEEECCCCe
Confidence 999999999998887776
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.91 E-value=0.023 Score=51.00 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=70.3
Q ss_pred eeEEEEecCCCeEEEEecCC-ccee-eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCc-ccee
Q 040987 43 SFIFAVARSSGLCRTAEYPA-VNSK-MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHK-APVT 118 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~-~~~~-~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~-~~V~ 118 (762)
..-+++|..+|.|.+|+... ++.. ........|.+-+.--.++.+..+++ +|.|+-|+++-++.+....+|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34678899999999998772 2221 22334444544233334444555555 7999999999999888888888 6677
Q ss_pred EEEEeCCCCcccceeeeEEee--ecCCeEEEEeCCC
Q 040987 119 TVIVVPASTPATKILSYCWTA--SLDGTIKYWDFSV 152 (762)
Q Consensus 119 ~v~~s~~~~~~~~l~~~l~s~--s~d~~i~vWd~~~ 152 (762)
.+..+..+ .+++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd-------~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSD-------EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCC-------ceEEeeccccchhhhhcchhh
Confidence 76666666 466666 7788888888764
No 410
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=1.1 Score=47.88 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=102.5
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
..-.|+|++. +|..+......|. .+-.+.|+.+..+|+...+|++.+|++...... ............|..+.|..
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie--~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIE--SNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhc--ccccccccccCceeEEEEec
Confidence 3446788876 4555533334444 888999999999999999999999999876543 10011122334567777776
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe-cCCCEEEE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS-SDGAYLYS 370 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s 370 (762)
+|-.+. ..+|.+.+-+-.+..........+.. .-+..+...+..|.....-+... +.+..
T Consensus 138 ~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~--------------~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~--- 198 (829)
T KOG2280|consen 138 NGVAVL--TVSGQVILINGVEEPKLRKMPDIPYN--------------ELPKSCWTVFQPHRQSTILLDVDVAVGLH--- 198 (829)
T ss_pred CceEEE--ecCCcEEEEcCCCcchhhhCCCCCCc--------------cCCCcceeEecCCCcceeEEeechhhhhc---
Confidence 774333 34555555432211110000000000 00001111111121111111110 11111
Q ss_pred EecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 371 GGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+..-+....+...+....+.+..+..||+.++|+.-...|.+.+-+.+..+....+..
T Consensus 199 ------~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 199 ------ICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred ------ccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 1111111222222333346788899999999999999999999999887777766653
No 411
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.052 Score=59.68 Aligned_cols=101 Identities=22% Similarity=0.346 Sum_probs=73.6
Q ss_pred CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 566 NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 566 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
.+..++.|+..|.+-..|....-.. + .......++|++++|+.||+.++.|- +|.|.+||+..++.++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~--------~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--L--------HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--h--------hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 3557888888888888887654211 0 01123468999999999999999997 99999999999999998
Q ss_pred eccccCceeEE---EEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 645 IGETLTPIMNM---SFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 645 l~~~~~~v~~~---~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
+..|..+...+ .+..++..++++...|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs----f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS----FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeCCCcEEEEccCCCc----eEEE
Confidence 87777775544 34456666777766553 5654
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=95.73 E-value=2.6 Score=42.47 Aligned_cols=158 Identities=14% Similarity=0.036 Sum_probs=84.3
Q ss_pred CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEE
Q 040987 394 GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFY 473 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 473 (762)
...+..+.+.+++.+++++ ..|.+..-....++......... ...+.++.+.++++.++++ ..|.+++-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~---------~~~l~~i~~~~~g~~~~vg-~~G~~~~~ 240 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNS---------SRRLQSMGFQPDGNLWMLA-RGGQIRFN 240 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCC---------cccceeeeEcCCCCEEEEe-cCCEEEEc
Confidence 4578889999998777665 45544432112223222222211 1577889999999877665 55765432
Q ss_pred EcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCC
Q 040987 474 SLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH 553 (762)
Q Consensus 474 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h 553 (762)
....+..-......... ....+..+.+.|++..++++ .++.+. ...+.++.-...... ..-
T Consensus 241 s~d~G~sW~~~~~~~~~------~~~~l~~v~~~~~~~~~~~G----------~~G~v~-~S~d~G~tW~~~~~~--~~~ 301 (334)
T PRK13684 241 DPDDLESWSKPIIPEIT------NGYGYLDLAYRTPGEIWAGG----------GNGTLL-VSKDGGKTWEKDPVG--EEV 301 (334)
T ss_pred cCCCCCccccccCCccc------cccceeeEEEcCCCCEEEEc----------CCCeEE-EeCCCCCCCeECCcC--CCC
Confidence 23333221111111000 02457888999988877776 345444 333433322221100 111
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 554 RDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 554 ~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
......+.|..+++.+++| ..|.|..|+
T Consensus 302 -~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 302 -PSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred -CcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 3357778887777666654 568776665
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.63 E-value=4.6 Score=45.47 Aligned_cols=259 Identities=7% Similarity=-0.074 Sum_probs=126.7
Q ss_pred CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe----------------CCCCEEEEeecCce
Q 040987 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN----------------HDGGLVALRAENYC 469 (762)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------~~~~~l~~~~~dg~ 469 (762)
+..+++++.++.|.-+|..+|+.+..+.......... .+ .....+++- ..+..++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~-~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR-QH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc-cc-ccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 4567777788899999999999988876543211000 00 011222221 13457888999999
Q ss_pred EEEEEcCCCCceeeEEeeccc-c-cCCCCcceeEEEEEEec--CCCeEEEEeeecc-ccCCCceeEEEEEEecCCCceeE
Q 040987 470 IHFYSLLDDRGISEVQVCERN-H-QPGDDVTVVVTLVALSQ--DGSLMSTVDIKLA-EEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
+.-.|..+++....+...... . .........-..+.-.| .+..+++++.... ......++.|+-+|..+++..+.
T Consensus 272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999999887665321100 0 00000000000111112 1234444431100 00001368899999999999888
Q ss_pred EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC-cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEE
Q 040987 545 LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG-DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 545 ~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
.... .+. . ... -+.+.....++.+. ...-+|.+.+...... +. .+..+-...+..
T Consensus 352 ~~~g--~p~-~---~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt------------Gn----~~pd~~g~~r~~ 407 (764)
T TIGR03074 352 WDPG--NPD-P---TAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM------------GN----QTPDQWGGDRTP 407 (764)
T ss_pred EecC--CCC-c---ccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC------------CC----ccccccCCcccc
Confidence 7531 111 0 000 01233222121111 1222333322211100 00 000010001100
Q ss_pred EEEc-CCeEEEEeCCCCeEEEEeccccCceeE---------EEEeC-CCC---EEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 624 AVAA-ETVITLWDPDRNVLVAVIGETLTPIMN---------MSFVG-SSE---YLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 624 a~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~---------~~~s~-dg~---~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
.... .+.|.-.|.++|+..-.++.....+++ +.+.. +|+ .++.++.+|. +++.|-++|++++..
T Consensus 408 ~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~--~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 408 ADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ--IYVLDRRTGEPIVPV 485 (764)
T ss_pred CcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE--EEEEECCCCCEEeec
Confidence 0011 466777888888877665431111111 22322 564 7888888887 999999999999986
Q ss_pred EEe
Q 040987 690 LLH 692 (762)
Q Consensus 690 ~~~ 692 (762)
+..
T Consensus 486 ~e~ 488 (764)
T TIGR03074 486 EEV 488 (764)
T ss_pred eee
Confidence 654
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=95.61 E-value=2.9 Score=42.16 Aligned_cols=158 Identities=13% Similarity=0.071 Sum_probs=87.5
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
+.+..+.+.|++.+++++ ..|.+..- ...+..... ...... ...+..+.+.++++.++++.
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~--~~~~~~------~~~l~~i~~~~~g~~~~vg~--------- 233 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWT--PHQRNS------SRRLQSMGFQPDGNLWMLAR--------- 233 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEE--EeeCCC------cccceeeeEcCCCCEEEEec---------
Confidence 577889999998766554 45544432 112211111 111111 45689999999999888774
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.+.+.+=..+.+..-...... .... ...+.++.+.|++..++++ .+|.+. .....++ .|........
T Consensus 234 -~G~~~~~s~d~G~sW~~~~~~-~~~~-~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~--------tW~~~~~~~~ 300 (334)
T PRK13684 234 -GGQIRFNDPDDLESWSKPIIP-EITN-GYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGK--------TWEKDPVGEE 300 (334)
T ss_pred -CCEEEEccCCCCCccccccCC-cccc-ccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCC--------CCeECCcCCC
Confidence 355543223333221111100 0001 3457889999988766554 566554 3444443 2222211111
Q ss_pred CCCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 607 KKKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
-....+.+.|..+++.+++|..|.|.-|+-
T Consensus 301 ~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 301 VPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 234678888888888999888999887763
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=3.1 Score=44.76 Aligned_cols=184 Identities=13% Similarity=0.153 Sum_probs=94.8
Q ss_pred CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCC
Q 040987 256 RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERP 335 (762)
Q Consensus 256 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (762)
-.|+|+++...... +....|. .+..+.|+.+.. |++-..+|++++|++.+...-...
T Consensus 64 ~~I~If~~sG~lL~-----~~~w~~~-~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~s---------------- 120 (829)
T KOG2280|consen 64 PYIRIFNISGQLLG-----RILWKHG-ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNS---------------- 120 (829)
T ss_pred eeEEEEeccccchH-----HHHhcCC-CeeeecccCCce-EEEEeccceEEEeecchhhhcccc----------------
Confidence 45889988876544 5555555 788999997776 455568999999998544211100
Q ss_pred CcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEE-EecCCCceeccCCCCC---CeEEEEeCCCCC---e
Q 040987 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVV-WQLDTGKKKFLPRIGS---PLLYFTESPDPS---L 408 (762)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~-wd~~~~~~~~~~~~~~---~v~~~~~s~~~~---~ 408 (762)
.-.......|..+.|..+|-.+.+ .+|++.+ -+.........+..+. +-.|-...+++. .
T Consensus 121 -----------vg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ 187 (829)
T KOG2280|consen 121 -----------VGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI 187 (829)
T ss_pred -----------cccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCccee
Confidence 001112234555666656633333 3344443 3333323322222111 112222222211 1
Q ss_pred EEEEecCCcEEEEEcCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEE
Q 040987 409 SSISCADNQVHLLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQ 485 (762)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 485 (762)
++-....-...++...... ....+... .+.+..+.+||+.++|+.-...|.+.+-+....+...++.
T Consensus 188 ll~v~~~v~~~~~q~~~~~~q~~~~~~~----------~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 188 LLDVDVAVGLHICQVEESRVQLHALSWP----------NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEeechhhhhcccceecccccccccCCC----------CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1111000001111111110 01111111 1577889999999999999999999998887766555544
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.47 E-value=0.051 Score=35.67 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=28.8
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
...|.+++|+|...+||.+..+|.|.++++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45699999999999999999999999999843
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.46 E-value=1 Score=49.06 Aligned_cols=220 Identities=9% Similarity=0.064 Sum_probs=117.5
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC------CeEEEEEccCchhhhheeeeeeeccCcCeEEE
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ------RKLLIWKVPDVEAERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 287 (762)
..+..+|..++.-...........-.++++..+--|+++|.+ ..+..||..+.+-. .. .............
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~--~~-a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT--PV-APMNTKRSDFGVA 377 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee--cc-CCccCccccceeE
Confidence 688899998886554444444445566666655444445555 45778888777643 11 1111111111112
Q ss_pred EEcCCCcEEEEeecCCe-----EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 288 AFHPTQRIVAAGDVTGR-----ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg~-----v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.+ +|...|+|+.||. +..||..+.+. ..+..+.........+ .
T Consensus 378 ~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W----------------------------~~va~m~~~r~~~gv~--~ 425 (571)
T KOG4441|consen 378 VL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW----------------------------TPVAPMLTRRSGHGVA--V 425 (571)
T ss_pred EE--CCEEEEEeccccccccccEEEecCCCCcc----------------------------cccCCCCcceeeeEEE--E
Confidence 22 7888889988863 66677655432 1122221111112222 2
Q ss_pred cCCCEEEEEecC------CeEEEEecCCCceeccCCCCCCeEEE-EeCCCCCeEEEEecCC-----cEEEEEcCCceEEE
Q 040987 363 SDGAYLYSGGKE------GVLVVWQLDTGKKKFLPRIGSPLLYF-TESPDPSLSSISCADN-----QVHLLKMPSMEIIR 430 (762)
Q Consensus 363 ~~g~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~-----~i~i~d~~~~~~~~ 430 (762)
-+|+..+.||.+ .++..||..++..........+=... .-.-++...++|+.++ .+..||..+.+-..
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 367777777754 45788999998886655544321111 2234677777787765 36778877654332
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-----eEEEEEcCCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-----CIHFYSLLDD 478 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~ 478 (762)
. .....+. ..+ .+ ..-+++..++|+.|| +|..||..++
T Consensus 506 v-~~m~~~r-------s~~-g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 506 V-APMTSPR-------SAV-GV-VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred c-ccCcccc-------ccc-cE-EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 2 1111000 111 11 122466777777664 5667776655
No 418
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.44 Score=42.24 Aligned_cols=177 Identities=12% Similarity=0.066 Sum_probs=95.1
Q ss_pred CCCEEEEEe--C-CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEE
Q 040987 84 DVKRLLVCT--S-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTID 160 (762)
Q Consensus 84 dg~~la~~~--~-~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~ 160 (762)
||.++.+.+ . ..|++||+.+|+.+..-.-....+..=-...-|+ .+-+-.-.|+.-.++|.++.+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd------~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD------YFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc------eEEEEEeccceeEEEChHHhhhhcccc
Confidence 456666665 2 7999999999988764432212222111112221 222334567888999999999998887
Q ss_pred eccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCC----
Q 040987 161 VKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMK---- 236 (762)
Q Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~---- 236 (762)
....-+.++ .|+.+. +++.....++.-|.++............+
T Consensus 129 y~GeGWgLt----------~d~~~L----------------------imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~ 176 (262)
T COG3823 129 YEGEGWGLT----------SDDKNL----------------------IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVS 176 (262)
T ss_pred cCCcceeee----------cCCcce----------------------EeeCCceEEEecCHHHhhhcceEEEEECCeecc
Confidence 776666663 233331 34445556666677666555333222211
Q ss_pred CceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhh-------eeeeeeeccCcCeEEEEEcCCC-cEEEEe
Q 040987 237 EPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERV-------VMRKITLHHTKKLTVLAFHPTQ-RIVAAG 299 (762)
Q Consensus 237 ~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp~~-~~l~~~ 299 (762)
.++-+.|- ||...| +-.+..|...+..+++.... ........|.+-.+.+++.|++ +++++|
T Consensus 177 ~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 177 KLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 22233332 455554 33344444444444432200 0112223455677899999987 455555
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.99 E-value=1.8 Score=45.18 Aligned_cols=157 Identities=11% Similarity=0.050 Sum_probs=91.4
Q ss_pred ccceeEEEEecCCCEEEEEe---cCCeEEEEecCCCceeccCCCCCCeEEEEeCCC----CCeEEEEecCCcEEEEEcCC
Q 040987 353 PSEVSVLIFSSDGAYLYSGG---KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD----PSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d~~i~i~d~~~ 425 (762)
-.++..++|. ||+.++-.. .+|.+++=|- ...+.-..|..+.|.|- -..+++.-....|.||.+..
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3468889997 666655432 1222222111 12333456889999884 33455555788999999862
Q ss_pred -----ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 426 -----MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 426 -----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
.+.+..-..+-. +...--...+.|+|....|++-+....-.++++......-...... .+.
T Consensus 92 s~~e~~K~l~sQtcEi~-----e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---------~G~ 157 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIR-----EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---------SGL 157 (671)
T ss_pred Cccccccceeeeeeecc-----CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---------Cce
Confidence 222222111110 0001233578899998888877766655666766544333332221 567
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
|.|.+|.+||+.|+++-. ..-.-++||-..
T Consensus 158 IhCACWT~DG~RLVVAvG--------SsLHSyiWd~~q 187 (671)
T PF15390_consen 158 IHCACWTKDGQRLVVAVG--------SSLHSYIWDSAQ 187 (671)
T ss_pred EEEEEecCcCCEEEEEeC--------CeEEEEEecCch
Confidence 999999999999888752 334567787553
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.99 E-value=0.76 Score=47.20 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=79.5
Q ss_pred CCceEEEECCCCCEEEEEe------------C-CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC
Q 040987 236 KEPQVITISSSGKYFGIRK------------Q-RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT 302 (762)
Q Consensus 236 ~~v~~~~~spdg~~la~~~------------~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 302 (762)
..+..|+|.++|+++++.. . ..|.+++-.++.-..... ..+.........+++.+++ .++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~-~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS-NVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee-EEeecCCCCccceeEecCC-EEE-eCCC
Confidence 5678899999999887642 2 277777654332211111 2333334456889999998 444 4444
Q ss_pred CeEEEE-eccCCceeecccccccccccccccCCCCcccCCccccceeeec----cccceeEEEEecCCCEEEEEecC---
Q 040987 303 GRILIW-RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW----HPSEVSVLIFSSDGAYLYSGGKE--- 374 (762)
Q Consensus 303 g~v~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~s~~g~~l~s~~~d--- 374 (762)
. |..+ +.......... ....+..+.. +......++|.|||.+.++.+..
T Consensus 91 ~-i~~~~d~~gdg~ad~~----------------------~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 91 D-ILFLRDKDGDDKADGE----------------------REVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred e-EEEEeCCCCCCCCCCc----------------------cEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 3 4433 44321100000 0000111211 23446789999999766654421
Q ss_pred ----------------CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEE
Q 040987 375 ----------------GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 375 ----------------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (762)
+.|..++.++++...+...-.....++|+++|+++++
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 3455666665554333322334567888888877654
No 421
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.85 E-value=3 Score=37.88 Aligned_cols=161 Identities=11% Similarity=0.136 Sum_probs=82.7
Q ss_pred CEEEEeecCceEEEEEcCCCC--ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE--
Q 040987 459 GLVALRAENYCIHFYSLLDDR--GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW-- 534 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw-- 534 (762)
..|+.+...+.|.+|++.... ....+.. -+.|..++++..|++|++--.+.... ....+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-----------v~~V~~l~y~~~GDYlvTlE~k~~~~---~~~fvR~Y~N 94 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-----------VGRVLQLVYSEAGDYLVTLEEKNKRS---PVDFVRAYFN 94 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-----------hhheeEEEeccccceEEEEEeecCCc---cceEEEEEEE
Confidence 455555677789999998332 2333332 45689999999999999986431111 11255664
Q ss_pred -Eec-CC-Ccee-EEE----------------EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc-cccc
Q 040987 535 -VSG-TQ-NKEF-TLS----------------TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ-QKDL 593 (762)
Q Consensus 535 -d~~-~~-~~~~-~~~----------------~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~-~~~~ 593 (762)
+.. .. .+.. .+. ..+.-+- .....+++-.|-..-|+.|+ ++.+.+|.+..... ...+
T Consensus 95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~ 172 (215)
T PF14761_consen 95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKF 172 (215)
T ss_pred hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccc
Confidence 222 11 1110 000 0001122 44567777777433444454 46799998876544 1111
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~ 637 (762)
.--.+.........+-....+++. +.|+|..++..+++..+.
T Consensus 173 ~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 173 SFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred cEEechhhhhheecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 000000000000112223455553 458888888888877653
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.82 E-value=5.1 Score=44.72 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=55.2
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCC----ceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD----RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
-.|..+.++|+|++||..|..| |.|-.+... ..+...........+..+. ......+...|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-------------~~~~~~~~~~i~ 150 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-------------RFFTSNSSLEIK 150 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech-------------hhccCCCCceEE
Confidence 4688999999999999888766 555544211 1111111111111111110 001123456788
Q ss_pred EEEEecC---CCEEEEEecCCeEEEEecCCCc
Q 040987 358 VLIFSSD---GAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 358 ~~~~s~~---g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
.+.|+|. +..|+.-..|+++++||+....
T Consensus 151 qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 151 QVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 9999986 4788889999999999997543
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.75 E-value=1.3 Score=45.63 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=52.3
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEE-ecCCC-----ce-ec---cCC----CCCCeEEEEeCCCCCeEEEEecC----
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVW-QLDTG-----KK-KF---LPR----IGSPLLYFTESPDPSLSSISCAD---- 415 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~w-d~~~~-----~~-~~---~~~----~~~~v~~~~~s~~~~~l~~~~~d---- 415 (762)
.....+++.++| .+ .+... .|..+ |.... +. .. +.. .......++|.|||.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-ly-V~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVGG-VY-VATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecCC-EE-EeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 345788998888 44 44443 45444 44321 21 11 111 12346789999999876654421
Q ss_pred ---------------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 416 ---------------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 416 ---------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
+.+..++..+++....-.+. .....++|+++|+++++-
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-----------rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-----------QNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCc-----------CCCccceECCCCCEEEEc
Confidence 33555555544332222222 234678899988876653
No 424
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=1.4 Score=39.27 Aligned_cols=181 Identities=14% Similarity=0.109 Sum_probs=95.1
Q ss_pred CCCEEEEEecC--CeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEE-EecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 364 DGAYLYSGGKE--GVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSI-SCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 364 ~g~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+|.++.+.+.- ..|++||+.+++........ ..+..=-...-|..+.. .-.+|.-..+|.++.+++..+.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC----
Confidence 55666666543 46999999999886443333 12211111111222222 236788889999887777665422
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK 519 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 519 (762)
+.-.. ...|++.|+.+....+++.-|.++-....++.....+.. -..++.+.|- ||...|-.-
T Consensus 131 -------GeGWg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p-----v~~LNELE~V-dG~lyANVw-- 193 (262)
T COG3823 131 -------GEGWG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP-----VSKLNELEWV-DGELYANVW-- 193 (262)
T ss_pred -------Cccee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee-----cccccceeee-ccEEEEeee--
Confidence 22233 345666687777777888888887766666655443221 1112223331 343333322
Q ss_pred ccccCCCceeEEEEEEecCCCceeEEEEE-------eecCCCCCceEEEEEcCCCC-eEEEE
Q 040987 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTI-------VYEPHRDAGISAVAFHPNRR-AAVSS 573 (762)
Q Consensus 520 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~h~~~~v~~~~~spd~~-~l~~~ 573 (762)
....|...+.++++....+... ....| .+-.+.+++.|++. ++++|
T Consensus 194 -------~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~-~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 194 -------QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSN-DNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred -------eecceEEEcCCCCcEEEEEEccCCchhcCccccc-cccccceeecCcCCeEEEec
Confidence 2233444444444433222110 01123 45678899999874 55554
No 425
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.61 E-value=6.3 Score=40.57 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=87.3
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce-eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI-SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
+....+..++|+.+++++.....++-||- +... ....... ...+..+.+.+++..++++.
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~---------~~~l~~v~~~~dg~l~l~g~-------- 299 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRAS---------ARRIQNMGWRADGGLWLLTR-------- 299 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCC---------ccceeeeeEcCCCCEEEEeC--------
Confidence 34455677888887777654433333443 2211 1111110 45588999999999888774
Q ss_pred CceeEEEEEEecCCCce--eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeee
Q 040987 526 GSLVCLKFWVSGTQNKE--FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~--~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 603 (762)
.+.+. +....+..- ..+........ ...+.++.|.+++..+++| ..|.+.... ..++ .|.....
T Consensus 300 --~G~l~-~S~d~G~~~~~~~f~~~~~~~~-~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~--------tW~~~~~ 365 (398)
T PLN00033 300 --GGGLY-VSKGTGLTEEDFDFEEADIKSR-GFGILDVGYRSKKEAWAAG-GSGILLRST-DGGK--------SWKRDKG 365 (398)
T ss_pred --CceEE-EecCCCCcccccceeecccCCC-CcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCc--------ceeEccc
Confidence 34433 333333211 02221111111 3358899999887766655 567655543 3333 2333222
Q ss_pred cccCCCCeEEEEEcCCCcEEEEEcCCeEEEE
Q 040987 604 GSYKKKAMTAAAFSADGSVLAVAAETVITLW 634 (762)
Q Consensus 604 ~~~~~~~i~~~~~s~dg~~la~~~d~~i~iw 634 (762)
...-....+.+.|.++++.+++|.+|.|.-|
T Consensus 366 ~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 366 ADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred cCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 2223467889999999999999989887655
No 426
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.30 E-value=4 Score=37.06 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=38.4
Q ss_pred eecCCCEEEEEeCCEEEEEEcc--cceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 81 FSNDVKRLLVCTSNTVSIFSTS--TGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 81 ~s~dg~~la~~~~~~i~iwd~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
-++.+.++++++++.|.+|+++ ..+++.+|..- +.|..+.++..| .||+|-=.
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~G-------DYlvTlE~ 79 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAG-------DYLVTLEE 79 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecccc-------ceEEEEEe
Confidence 3343445455667999999987 34566777644 789999999999 78888633
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.27 E-value=1.9 Score=46.54 Aligned_cols=118 Identities=14% Similarity=0.251 Sum_probs=72.5
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc--CCCCeEEEEeCCCcE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH--PNRRAAVSSSYGGDF 579 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s--pd~~~l~~~~~dg~i 579 (762)
.-+.-+.-++..++.+ ....+.|||...+...++.. + .. .+.|.++.|. |||+.+.+.+..+.|
T Consensus 33 ~li~gss~~k~a~V~~---------~~~~LtIWD~~~~~lE~~~~---f-~~-~~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDS---------SRSELTIWDTRSGVLEYEES---F-SE-DDPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred ceEeecccCcEEEEEC---------CCCEEEEEEcCCcEEEEeee---e-cC-CCceeeceeeecCCCCEEEEEEcCcEE
Confidence 3444444455444443 56799999999887443332 1 33 5689999885 588888888889999
Q ss_pred EEEEcccccccccccCCceeeee---ecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 580 KVWICNDELQQKDLQSSGWSCHA---VGSYKKKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
.+|.-........ .+.|.... .......+|.+..|.+||.++ +|+++.+.|+|-
T Consensus 99 ~l~~Q~R~dy~~~--~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk 155 (631)
T PF12234_consen 99 LLYTQLRYDYTNK--GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDK 155 (631)
T ss_pred EEEEccchhhhcC--CcccceeEEEEeecCCCCCccceeEecCCeEE-EEeCCEEEEECC
Confidence 9885432111111 11232221 112223688999999998555 455677888864
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.64 Score=51.95 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=95.1
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC-----CCceEEEEEcCCCC-eEE
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-----DAGISAVAFHPNRR-AAV 571 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~spd~~-~l~ 571 (762)
...+..+...+|+...++.... ++-.|..||+++-..........+..|. .....++.|.|.=. ..+
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~ts-------ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTS-------NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred cccceEEEeccCCceEEEEEec-------CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence 3456777888888877666532 4558999998764332211111111110 33456778888532 345
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc---
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE--- 647 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~--- 647 (762)
.+..|+.|++..+......... .......++++|+|.|+.+++|. .|++.-|...- +....+.+
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s-----------~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~ 240 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTS-----------FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPV 240 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcc-----------cCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCc
Confidence 5667888888876543322211 12356789999999999999997 89998887653 32223322
Q ss_pred -ccCceeEEEEeCCCCEEEEEE
Q 040987 648 -TLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 648 -~~~~v~~~~~s~dg~~l~s~~ 668 (762)
....|.+++|-..-.+|++-+
T Consensus 241 ~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 241 EENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CCCcceeEEEEecceeEEEEec
Confidence 135699999999877777653
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.19 E-value=2.3 Score=46.00 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=69.3
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc--CCCcEEEEEc-CCeEEE
Q 040987 557 GISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS--ADGSVLAVAA-ETVITL 633 (762)
Q Consensus 557 ~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~dg~~la~~~-d~~i~i 633 (762)
...-+.-|.-++..++-+....+.|||...+....... + ...+.|.++.|. |||+.+.+.+ ...|.+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~---------f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES---------F-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee---------e-cCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 33444445555555554445679999998877443331 1 346788999885 6888765554 999998
Q ss_pred EeCC-----C----CeEEEEe--cccc-CceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 634 WDPD-----R----NVLVAVI--GETL-TPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 634 wd~~-----~----~~~~~~l--~~~~-~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
|.-. . ...+..+ ..|+ .+|.+..|.+||..++.+|.. +.|+|-
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq----lfv~dk 155 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ----LFVFDK 155 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCE----EEEECC
Confidence 8532 1 1222222 3333 579999999999766666432 888864
No 430
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.19 E-value=5 Score=37.66 Aligned_cols=240 Identities=10% Similarity=0.009 Sum_probs=140.8
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
..-..++-+|||..-+++...+.|--.|..+|+....--+.. .....+...|||...++-+.. -|.-+|
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G----------a~Phgiv~gpdg~~Witd~~~-aI~R~d 130 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG----------ASPHGIVVGPDGSAWITDTGL-AIGRLD 130 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC----------CCCceEEECCCCCeeEecCcc-eeEEec
Confidence 345667888999888888888888888988888765543332 345678888998877664444 455556
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec--cccCCCceeEEEEEEecCCCceeEEEEEeecC
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL--AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP 552 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 552 (762)
-++.+ +.+++..... .........|.+.|++-.++.... ..+ ...+.|++|+...
T Consensus 131 pkt~e-vt~f~lp~~~------a~~nlet~vfD~~G~lWFt~q~G~yGrLd--Pa~~~i~vfpaPq-------------- 187 (353)
T COG4257 131 PKTLE-VTRFPLPLEH------ADANLETAVFDPWGNLWFTGQIGAYGRLD--PARNVISVFPAPQ-------------- 187 (353)
T ss_pred Ccccc-eEEeeccccc------CCCcccceeeCCCccEEEeeccccceecC--cccCceeeeccCC--------------
Confidence 55442 3333333221 145678889999999988885210 000 0234555555442
Q ss_pred CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeE
Q 040987 553 HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVI 631 (762)
Q Consensus 553 h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i 631 (762)
...-..++..|||..-++.-.+..|-..|..++....... ..........+--+|.|+.-++-. .+.+
T Consensus 188 --G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~---------P~~~~~gsRriwsdpig~~wittwg~g~l 256 (353)
T COG4257 188 --GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ---------PNALKAGSRRIWSDPIGRAWITTWGTGSL 256 (353)
T ss_pred --CCCCcceEECCCCcEEEEeccccceEEcccccCCcceecC---------CCcccccccccccCccCcEEEeccCCcee
Confidence 3344578889999988776667777777776663322221 111123344555567777766654 7888
Q ss_pred EEEeCCCCeEEE-EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 632 TLWDPDRNVLVA-VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 632 ~iwd~~~~~~~~-~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.-+|..+..-+. .|.+....-.++.....++.-.+--.-+. |.-+|-+
T Consensus 257 ~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~aga--i~rfdpe 305 (353)
T COG4257 257 HRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGA--IGRFDPE 305 (353)
T ss_pred eEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCc--eeecCcc
Confidence 888877654221 33443344455555555544433322332 4444443
No 431
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.01 E-value=5 Score=41.81 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=37.4
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--EEEEEeecCCCCCceEEEEEcCCC
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF--TLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
....++|.|||++|++-- ..+.|++++..+..... .+........ .+....|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER---------~~G~I~~v~~~~~~~~~~~~l~~v~~~~g-e~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTER---------ATGKILRVNPETGEVKVVFTLPEIVNDAQ-HNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEe---------cCCEEEEEeCCCCceeeeecCCceeccCC-CCceeeEEECCCc
Confidence 478899999998887763 25889998865543211 1111111112 5678999999884
No 432
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.00 E-value=4.9 Score=40.46 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=91.0
Q ss_pred ccceeEEEEecCCCEEEEEecCCe------EEEEecCC--Cc---e-----eccCCCCC--------CeEEEEeCCCCCe
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGV------LVVWQLDT--GK---K-----KFLPRIGS--------PLLYFTESPDPSL 408 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~------i~~wd~~~--~~---~-----~~~~~~~~--------~v~~~~~s~~~~~ 408 (762)
-+.+..+.+.+++..+++.+++|. ++.+++.. +. . ..+....+ ...++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356778889866667777777777 66665543 11 1 11111111 3446788778887
Q ss_pred EEEEecC------CcEEEEEcCCceEEEEEccCCCC--CC---CCCcccCceeeEEEeCCCCEEEEeecC-----c--e-
Q 040987 409 SSISCAD------NQVHLLKMPSMEIIRSISGIKLP--CP---LPEEYKGLCRDIAFNHDGGLVALRAEN-----Y--C- 469 (762)
Q Consensus 409 l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~--~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g--~- 469 (762)
+++.-.+ ..|..++.. |+....+.-...- .. .....+....+++++|||+.|+++.+. + .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776556 678888876 6666655221110 00 122234678899999999976665432 1 1
Q ss_pred ------EEE--EEcCC-CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 470 ------IHF--YSLLD-DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 470 ------i~i--~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
+++ ||..+ +.....+........... ....+..+.+-+++++|+.=
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~-~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAP-GDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCcccccc-CCCCceeEEEECCCcEEEEE
Confidence 444 45444 223333333322100000 15668888999998866653
No 433
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.53 E-value=21 Score=42.74 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=63.2
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
...|+.++.-.+.++++.- ..+.+.... ..+. ...+.. .+- .+.|..++.....++.|.. .+|
T Consensus 702 ~~~i~a~Avv~~~~fvald----------~qg~lt~h~-k~g~-p~~l~~---~gl-~G~ik~l~lD~~~nL~Alt-~~G 764 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALD----------DQGDLTAHQ-KPGR-PVPLSR---PGL-SGEIKDLALDEKQNLYALT-STG 764 (1774)
T ss_pred cCcceeEEEEcCCceEEec----------cCCcccccc-CCCC-CccCCC---CCC-CcchhheeeccccceeEec-CCC
Confidence 4568888887776666655 667888887 5444 333332 344 6889999999887766654 466
Q ss_pred cEEEEEcccccccccc--cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcC
Q 040987 578 DFKVWICNDELQQKDL--QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAE 628 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d 628 (762)
.++--+-........- ....|...... ....+.++.-..|....+.-.|
T Consensus 765 ~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP--~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 765 ELFRLPKEAWQGNAEGDQMAAKWQKVALP--DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ceeecCHHHhhCcccCCccccCceeccCC--CCCchhhhhcCCCCceEEEecC
Confidence 6554332222111111 12456655433 3456666655555544444334
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=9.4 Score=38.60 Aligned_cols=159 Identities=8% Similarity=0.098 Sum_probs=100.3
Q ss_pred ceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceee
Q 040987 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFA 317 (762)
Q Consensus 238 v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~ 317 (762)
.+.+-|....+.|.+...|.+.-|........ .+..+.....++|.++.||+|.+.||+--.+.+|.+++....+...
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndD--VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDD--VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCC--CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555666666666666677777776654422 2334445567799999999999999999999999999975443221
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecC--CCceeccCCCCC
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLD--TGKKKFLPRIGS 395 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~ 395 (762)
+.....+..+..|....|+.+ .-++.....| +-+|... .........+.-
T Consensus 103 --------------------------~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~ 154 (657)
T KOG2377|consen 103 --------------------------EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL 154 (657)
T ss_pred --------------------------HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhccc
Confidence 112233334456888889865 4566555444 4555443 333345566777
Q ss_pred CeEEEEeCCCCCeEEEEec--CCcEEEEEcCCc
Q 040987 396 PLLYFTESPDPSLSSISCA--DNQVHLLKMPSM 426 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~--d~~i~i~d~~~~ 426 (762)
.|.-..|.++.+.++.++. .+.+.=+.++++
T Consensus 155 nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 155 NVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred CccEEEEccccceEeeeccccccccccEEEeec
Confidence 8888999998876554433 344444444443
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=3.1 Score=41.81 Aligned_cols=107 Identities=7% Similarity=0.101 Sum_probs=76.9
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLW 634 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iw 634 (762)
.+.|.++.||+|.+.+|.--.+.+|.+++....+..... ...| ......|....|+.+ +-+|.-.+..+.+|
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~---~~~c----k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y 137 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY---TQEC----KTKNANILGFCWTSS-TEIAFITDQGIEFY 137 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH---HHHh----ccCcceeEEEEEecC-eeEEEEecCCeEEE
Confidence 679999999999999999999999999998544433322 1112 234567899999877 56666666667777
Q ss_pred eCCCC-eEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 635 DPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 635 d~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
.+... +.++..+.|.-.|....|.++-+.+.-++.
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 66543 345556678888999999998876555543
No 436
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=0.82 Score=51.17 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=91.0
Q ss_pred CceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeE-EeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 447 GLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEV-QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
-.+..+...+|+...++.. .+-.|..||+++-...... ......+...........++.|.|.-......+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l----- 175 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL----- 175 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc-----
Confidence 4556677778876554443 3447899998764332211 1112222211112344567788875433222221
Q ss_pred CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeee
Q 040987 524 GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603 (762)
Q Consensus 524 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 603 (762)
.|+.|++..+........- -+- ....++++|+|.|+.++.|-..|++.-|...-... ..++ |..
T Consensus 176 ---~dlsl~V~~~~~~~~~v~s-----~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~~ip-----~Pp- 239 (1405)
T KOG3630|consen 176 ---SDLSLRVKSTKQLAQNVTS-----FPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-SEIP-----EPP- 239 (1405)
T ss_pred ---cccchhhhhhhhhhhhhcc-----cCc-ccceeeEEeccccceeeEecCCCeEEEeeccccee-eccc-----CCC-
Confidence 5677877766543322111 012 56789999999999999999999998887643321 1111 111
Q ss_pred cccCCCCeEEEEEcCCCcEEEEE
Q 040987 604 GSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 604 ~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
......|.++.|-....++++-
T Consensus 240 -~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 240 -VEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred -cCCCcceeEEEEecceeEEEEe
Confidence 1125789999998877777653
No 437
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.10 E-value=12 Score=38.63 Aligned_cols=144 Identities=8% Similarity=0.075 Sum_probs=85.9
Q ss_pred CCCEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCC-----CCCeEEEEecCCcEEEEEcCC--ce----
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESP-----DPSLSSISCADNQVHLLKMPS--ME---- 427 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~i~d~~~--~~---- 427 (762)
+...|++|+..|.+++|+...... ........+|..+..-. +...|++ -.-..+.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 346899999999999999865442 23445667888887532 2234444 5777888888732 11
Q ss_pred ---EEEEEccCCCCCCCCCcccCceeeEEEeC----C-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 428 ---IIRSISGIKLPCPLPEEYKGLCRDIAFNH----D-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 428 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
.+..+..|..+ .....+++-| . ..++.+-+-||.+.+|+-+.-.-...++. .-
T Consensus 115 ~~~~L~~~yeh~l~--------~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-----------~l 175 (418)
T PF14727_consen 115 NQYQLELIYEHSLQ--------RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-----------FL 175 (418)
T ss_pred cEEEEEEEEEEecc--------cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-----------CC
Confidence 22333333321 2334455444 2 35788889999999999764321111111 11
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEe
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVS 536 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~ 536 (762)
-...+++.+.-..+++++ ....+.-|..
T Consensus 176 lPgPl~Y~~~tDsfvt~s---------ss~~l~~Yky 203 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTAS---------SSWTLECYKY 203 (418)
T ss_pred CCcCeEEeecCCEEEEec---------CceeEEEecH
Confidence 134567777777777776 4456666654
No 438
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.06 E-value=7.9 Score=36.39 Aligned_cols=234 Identities=15% Similarity=0.065 Sum_probs=137.1
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
.-..++-.|||..-+++...+.|--.|-.+|+.... ...+..-..+...|||..-++-+.. .|.-+|-++.+..+ +.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-f~ 140 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-FP 140 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE-ee
Confidence 345678889998888888888888889999987543 3445566778888888776653222 55556665543322 21
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
-.. +..........|.+.|++.+++... +.|++|+... ......+
T Consensus 141 lp~------~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--------------------G~gpyGi 194 (353)
T COG4257 141 LPL------EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--------------------GGGPYGI 194 (353)
T ss_pred ccc------ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--------------------CCCCcce
Confidence 110 1112567788999999988887522 3344444432 2345678
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
+..|||..-++.- .++.|-..|..++... .+.. ..+. ....+.+--+|.|+.-++....+.+..+|.
T Consensus 195 ~atpdGsvwyasl---------agnaiaridp~~~~ae-v~p~--P~~~-~~gsRriwsdpig~~wittwg~g~l~rfdP 261 (353)
T COG4257 195 CATPDGSVWYASL---------AGNAIARIDPFAGHAE-VVPQ--PNAL-KAGSRRIWSDPIGRAWITTWGTGSLHRFDP 261 (353)
T ss_pred EECCCCcEEEEec---------cccceEEcccccCCcc-eecC--CCcc-cccccccccCccCcEEEeccCCceeeEeCc
Confidence 8899998777754 4456766676665322 1211 0121 223445556777887777666677777776
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE-cCCeEEEEeCCCC
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-AETVITLWDPDRN 639 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-~d~~i~iwd~~~~ 639 (762)
.... |.... +.+....-.++.....|+.-.+- +.+.|.-+|.++.
T Consensus 262 s~~s---------W~eyp-LPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 262 SVTS---------WIEYP-LPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cccc---------ceeee-CCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 5433 22111 22333444555555555433322 2456666666654
No 439
>PHA03098 kelch-like protein; Provisional
Probab=92.97 E-value=5.9 Score=43.37 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=93.9
Q ss_pred cCCCEEEEEecCC------eEEEEecCCCceeccCCCCCCe-EEEEeCCCCCeEEEEecC-----CcEEEEEcCCceEEE
Q 040987 363 SDGAYLYSGGKEG------VLVVWQLDTGKKKFLPRIGSPL-LYFTESPDPSLSSISCAD-----NQVHLLKMPSMEIIR 430 (762)
Q Consensus 363 ~~g~~l~s~~~dg------~i~~wd~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~~~ 430 (762)
.++..++.||.++ .+..||..+.+.........+- ......-+++.++.|+.+ ..+..||..+.+-..
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 3556666666432 5788998888776544433211 111122366777777754 346778877654321
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
......+ . .. .++ ..-+++..+.|+.+ ..+..||..+++-.. ...... ......
T Consensus 373 -~~~lp~~------r-~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~---------~r~~~~ 432 (534)
T PHA03098 373 -EPPLIFP------R-YN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPI---------SHYGGC 432 (534)
T ss_pred -CCCcCcC------C-cc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCc---------cccCce
Confidence 1111100 0 11 112 22356777777632 457888887653211 100000 001111
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-----CcE
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-----GDF 579 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-----g~i 579 (762)
+...+++.++.|+...... .+.-..+.+||..+.+-... .. .+.+......+.+ ++++++.|+.+ ..+
T Consensus 433 ~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~-~~---~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v 505 (534)
T PHA03098 433 AIYHDGKIYVIGGISYIDN-IKVYNIVESYNPVTNKWTEL-SS---LNFPRINASLCIF--NNKIYVVGGDKYEYYINEI 505 (534)
T ss_pred EEEECCEEEEECCccCCCC-CcccceEEEecCCCCceeeC-CC---CCcccccceEEEE--CCEEEEEcCCcCCccccee
Confidence 2334566666665321000 00123488888877643221 11 0110111122222 67777777754 367
Q ss_pred EEEEcccc
Q 040987 580 KVWICNDE 587 (762)
Q Consensus 580 ~iwd~~~~ 587 (762)
.+||..+.
T Consensus 506 ~~yd~~~~ 513 (534)
T PHA03098 506 EVYDDKTN 513 (534)
T ss_pred EEEeCCCC
Confidence 78887654
No 440
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.88 E-value=0.52 Score=46.94 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=99.8
Q ss_pred eeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCc----CeE-EEEEcCCCcEEEEeecCCeE
Q 040987 231 TLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTK----KLT-VLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~----~v~-~~~~sp~~~~l~~~~~dg~v 305 (762)
+......+..+-..|||+.|..-....+.++++.+.... .++......+ .|+ .+..-..|..|.+++.||.|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~---~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQ---IRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccc---hhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 444556788899999999998777789999998876543 1122222111 122 22223356678888899999
Q ss_pred EEE-eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 306 LIW-RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 306 ~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
.-| |+.....-. -..++.++-....+..+.-..+.+-+++-+..|++.++....
T Consensus 293 sQWFdvr~~~~p~-------------------------l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~ 347 (733)
T COG4590 293 SQWFDVRRDGQPH-------------------------LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS 347 (733)
T ss_pred eeeeeeecCCCCc-------------------------ceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc
Confidence 888 332211000 001111111122232222222345577778888888887665
Q ss_pred CceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 385 GKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
.+.......-..+.-+++||++.++++- ..|.++++.+++.
T Consensus 348 ~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 348 EKLLLFERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred CcceehhhhhcCcceeeeCcccchheee-cCCceEEEEecCC
Confidence 5554444444467778999999998875 6678999888754
No 441
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.71 E-value=4.3 Score=43.47 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=49.4
Q ss_pred CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEE-ECCCCc
Q 040987 607 KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVW-NMSKLS 684 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vw-d~~~~~ 684 (762)
|.+.|--+.....+..|..-. --.+.++|+.+.+....+. -.+-+.|.|-...|+.-+.|+ +++| +++-.+
T Consensus 336 h~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~dn---l~iwyn~d~pe 408 (1636)
T KOG3616|consen 336 HEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGDN---LCIWYNIDAPE 408 (1636)
T ss_pred ccccccceeccchhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCCc---eEEEecCCcch
Confidence 455555555555555555554 5667788887654332221 245688999888888888887 8888 666555
Q ss_pred eeeEEEEe
Q 040987 685 ISWSYLLH 692 (762)
Q Consensus 685 ~~~~~~~~ 692 (762)
.+-.+...
T Consensus 409 qvt~~kik 416 (1636)
T KOG3616|consen 409 QVTMFKIK 416 (1636)
T ss_pred hheeeEec
Confidence 55444443
No 442
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.64 E-value=5.2 Score=33.19 Aligned_cols=112 Identities=9% Similarity=0.041 Sum_probs=70.7
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC--------ceeEEEEEeecCCCCCceEEEEEcC-----CCCeEE
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN--------KEFTLSTIVYEPHRDAGISAVAFHP-----NRRAAV 571 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~h~~~~v~~~~~sp-----d~~~l~ 571 (762)
.|......|+.++ ..++|.|++..... .+..+.. ...|++++-.+ +...|+
T Consensus 5 kfDG~~pcL~~aT---------~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-------n~~italaaG~l~~~~~~D~Ll 68 (136)
T PF14781_consen 5 KFDGVHPCLACAT---------TGGKVFIHNPHERGQRTGRQDSDISFLNI-------NQEITALAAGRLKPDDGRDCLL 68 (136)
T ss_pred EeCCCceeEEEEe---------cCCEEEEECCCccccccccccCceeEEEC-------CCceEEEEEEecCCCCCcCEEE
Confidence 3444455666666 56788888766432 2222221 44677775544 345677
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC----CCcEEEEEcCCeEEEEeCCCCeEEEEe
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA----DGSVLAVAAETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----dg~~la~~~d~~i~iwd~~~~~~~~~l 645 (762)
.|+. ..+..||+.........+ -...+.++.+-. +..++++|++..|.-||.+..+..-+.
T Consensus 69 iGt~-t~llaYDV~~N~d~Fyke------------~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 69 IGTQ-TSLLAYDVENNSDLFYKE------------VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred Eecc-ceEEEEEcccCchhhhhh------------CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 7764 569999998776554332 346777777742 456777788999999998877665544
No 443
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.62 E-value=8.4 Score=38.76 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCCeEEEEeCC------CcEEEEEcccccccccccC-Cceeeee---ecccCCCCeEEEEEcCCCcEEEEE
Q 040987 557 GISAVAFHPNRRAAVSSSYG------GDFKVWICNDELQQKDLQS-SGWSCHA---VGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 557 ~v~~~~~spd~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
...++++.++|.++++.-.+ ..|+.++.. +.....+.. ..+.... .....+....+|+++|||+.|.++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 44578887888888877666 677777766 444333310 0110000 122356788999999999955543
Q ss_pred c------CC--e-------EEE--EeCCC-C----eEEEEecc-----ccCceeEEEEeCCCCEEEEE
Q 040987 627 A------ET--V-------ITL--WDPDR-N----VLVAVIGE-----TLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 627 ~------d~--~-------i~i--wd~~~-~----~~~~~l~~-----~~~~v~~~~~s~dg~~l~s~ 667 (762)
. |+ . ++| ||..+ + +....+.. ....+..+.+-+|+++|+--
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 2 32 1 444 55554 2 22223332 34568899999999977654
No 444
>PHA03098 kelch-like protein; Provisional
Probab=92.58 E-value=5.4 Score=43.66 Aligned_cols=153 Identities=12% Similarity=0.095 Sum_probs=74.9
Q ss_pred CCCEEEEEecC-----CeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecC------CcEEEEEcCCceEEEE
Q 040987 364 DGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCAD------NQVHLLKMPSMEIIRS 431 (762)
Q Consensus 364 ~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d------~~i~i~d~~~~~~~~~ 431 (762)
+++..+.||.+ ..+..||..+++.......+.+-.. .+..-+++..+.|+.+ +.+..||..+.+-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~- 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK- 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee-
Confidence 56677777754 3577889888776544333222111 1122356666666632 357888887654322
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC--------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN--------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
..... . ......+...+++..+.|+.+ ..+..||..+++-... ..... + ......
T Consensus 421 ~~~~p--~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~---~----r~~~~~ 483 (534)
T PHA03098 421 GSPLP--I-------SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-SSLNF---P----RINASL 483 (534)
T ss_pred cCCCC--c-------cccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-CCCCc---c----cccceE
Confidence 11111 0 011112233456666777643 2378888876542211 00000 0 111111
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+ .-+++.++.|+.. .......+.+||..+.+
T Consensus 484 ~--~~~~~iyv~GG~~----~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 484 C--IFNNKIYVVGGDK----YEYYINEIEVYDDKTNT 514 (534)
T ss_pred E--EECCEEEEEcCCc----CCcccceeEEEeCCCCE
Confidence 2 2267777777531 00013578888877654
No 445
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.03 E-value=13 Score=36.45 Aligned_cols=206 Identities=15% Similarity=0.109 Sum_probs=106.9
Q ss_pred eeeEEEeCCCCEEEEeec------------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-----C
Q 040987 449 CRDIAFNHDGGLVALRAE------------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-----S 511 (762)
Q Consensus 449 v~~~~~s~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-----~ 511 (762)
|..+...+++++.+.=+. .-.|..||+.+++.+.++........ ....+..+.+.... .
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~----~~s~lndl~VD~~~~~~~~~ 78 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP----PDSFLNDLVVDVRDGNCDDG 78 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-----TCGGEEEEEEECTTTTS-SE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc----cccccceEEEEccCCCCcce
Confidence 456666666665443111 13788999999998887766543322 14567888887632 2
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCC--------------CCCceEEEEEcC---CCCeEEEEe
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH--------------RDAGISAVAFHP---NRRAAVSSS 574 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h--------------~~~~v~~~~~sp---d~~~l~~~~ 574 (762)
++..++. ....|.++|+.+++..+.+.. ..... ....+..++.+| +++.|....
T Consensus 79 ~aYItD~--------~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ 149 (287)
T PF03022_consen 79 FAYITDS--------GGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHP 149 (287)
T ss_dssp EEEEEET--------TTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEE
T ss_pred EEEEeCC--------CcCcEEEEEccCCcEEEEecC-CcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEe
Confidence 4444432 446899999998765333221 00000 023466777766 777787776
Q ss_pred CCCcEEEEEcccccccccccCCce---eeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC------eEEEE
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGW---SCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN------VLVAV 644 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~------~~~~~ 644 (762)
..+ -++|.+.+...........- ...............++++++|.+..+-- .+.|..|+..+. +.+..
T Consensus 150 lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~ 228 (287)
T PF03022_consen 150 LSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ 228 (287)
T ss_dssp TT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE
T ss_pred CCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE
Confidence 544 34555544332221100000 00000111123556789999888777765 899999999862 22221
Q ss_pred eccccCceeEEEEeC--CCCEEEEEE
Q 040987 645 IGETLTPIMNMSFVG--SSEYLVATS 668 (762)
Q Consensus 645 l~~~~~~v~~~~~s~--dg~~l~s~~ 668 (762)
-...-.....+.+.+ +|.+.+.+.
T Consensus 229 d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 229 DPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp -CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred cCceeeccceeeeccccCceEEEEEC
Confidence 111124578889988 777666653
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=91.94 E-value=7.3 Score=41.75 Aligned_cols=148 Identities=9% Similarity=0.067 Sum_probs=73.8
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC---cEEEEEc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG---DFKVWIC 584 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg---~i~iwd~ 584 (762)
-+++..+.|+.+ ....+..||..+++-.. +.. -+.+......+ .-+|+..+.|+.++ .+..||.
T Consensus 317 ~~~~iYviGG~~-------~~~sve~ydp~~n~W~~-~~~---l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp 383 (480)
T PHA02790 317 ANNKLYVVGGLP-------NPTSVERWFHGDAAWVN-MPS---LLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLP 383 (480)
T ss_pred ECCEEEEECCcC-------CCCceEEEECCCCeEEE-CCC---CCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeC
Confidence 467777777632 22457788876543211 111 11101111222 23677888887653 4667777
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEE--EEeccccCceeEEEEeCCCC
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLV--AVIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~--~~l~~~~~~v~~~~~s~dg~ 662 (762)
.+.. |............. .+..-+|++.+.| |.+.+||.++++-. ..+.........+ .-+|+
T Consensus 384 ~~~~---------W~~~~~m~~~r~~~--~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~ 448 (480)
T PHA02790 384 NHDQ---------WQFGPSTYYPHYKS--CALVFGRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNK 448 (480)
T ss_pred CCCE---------EEeCCCCCCccccc--eEEEECCEEEEEC--CceEEecCCCCcEeEcCCCCCCccccEEE--EECCE
Confidence 6543 33222221111121 2223467777776 35678888877543 2332222222222 23678
Q ss_pred EEEEEEcCCC---CeEEEEECCCC
Q 040987 663 YLVATSWGSK---PQLSVWNMSKL 683 (762)
Q Consensus 663 ~l~s~~~d~~---~~v~vwd~~~~ 683 (762)
..+.||.++. ..+..||..++
T Consensus 449 IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 449 LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEEECCcCCCcccceEEEEECCCC
Confidence 8888876532 23777777654
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.93 E-value=0.15 Score=55.10 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=57.5
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCC-CCEEEEEeCCeEEEEEcc--CchhhhheeeeeeeccCcCeEEEE
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS-GKYFGIRKQRKLLIWKVP--DVEAERVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~ 288 (762)
..+.+++-|..+....+....+..+.+..++|..- -..++ -.-|.+.||+++ .|+...+...+........+.-+.
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 44556666655544333556666777777777421 11111 223677888876 344433333344444444555555
Q ss_pred EcC---CCcEEEEeecCCeEEEEeccC
Q 040987 289 FHP---TQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 289 ~sp---~~~~l~~~~~dg~v~vw~~~~ 312 (762)
|.| +.-++..+..++.+++.+...
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINR 214 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeech
Confidence 555 666777888888888887643
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.65 E-value=0.94 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCC---cEEEEEc-CCeEEEEeCCC
Q 040987 609 KAMTAAAFSADG---SVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 609 ~~i~~~~~s~dg---~~la~~~-d~~i~iwd~~~ 638 (762)
+.+.++.|||+. .+|+.+. -+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357899999854 4888887 79999999995
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.62 E-value=8.7 Score=39.42 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=46.4
Q ss_pred CCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 619 DGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 619 dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
...++|+++ .|.|++||--.-+....+.+-...|..+..+.+|+++++.+..- +.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y---llL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY---LLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce---EEEEecc
Confidence 445888888 89999999775555556666777899999999999988877654 6666654
No 450
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.60 E-value=30 Score=39.68 Aligned_cols=172 Identities=12% Similarity=0.026 Sum_probs=100.8
Q ss_pred CCCCCeEEEEeC---C----CCCeEEEEecCCcEEEEEcCCc---------------eEEEEEccCCCCCCCCCcccCce
Q 040987 392 RIGSPLLYFTES---P----DPSLSSISCADNQVHLLKMPSM---------------EIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 392 ~~~~~v~~~~~s---~----~~~~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
....+|..++|+ . ..++|++- ....+.|+...-. .++..+..+. ......
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~-------tgg~~~ 148 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSD-------TGGFPH 148 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhh-------cCCCcc
Confidence 566789999987 2 22355544 5567777772211 1222232211 122466
Q ss_pred eeEEEeC-CCCEEEEeecCceEEEEEcCCCCce--eeEEee--ccccc-CCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 450 RDIAFNH-DGGLVALRAENYCIHFYSLLDDRGI--SEVQVC--ERNHQ-PGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 450 ~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~--~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
.+++|+| +.+.+|+....|...+|++...... ..+... ..+.. ........-..+.|.++...|++++
T Consensus 149 aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~------ 222 (765)
T PF10214_consen 149 ADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN------ 222 (765)
T ss_pred ceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc------
Confidence 7899998 4568999999999999999222111 111111 11111 1111123456888999988888884
Q ss_pred CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC--CCeEEEEeCCCcEEEEEcccc
Q 040987 524 GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN--RRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 524 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd--~~~l~~~~~dg~i~iwd~~~~ 587 (762)
...+.++|+++......+. .... ...|..+.-+|+ +..++.. ...|...++...
T Consensus 223 ----r~~l~~~d~~~~~~~~~l~---~~~~-~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 223 ----RSKLMLIDFESNWQTEYLV---TAKT-WSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred ----CCceEEEECCCCCccchhc---cCCC-hhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 4689999999876533221 1223 568899998887 3333332 356777777763
No 451
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.59 E-value=0.76 Score=29.22 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=26.1
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
++|.++.|||+. ....+|+-+-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~----~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEP----GGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCC----CcccEEEEEccCCeEEEEEcccC
Confidence 468999999865 11136667777799999999853
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.58 E-value=5.3 Score=43.72 Aligned_cols=75 Identities=11% Similarity=0.242 Sum_probs=51.1
Q ss_pred cCCCceEEEEC--CCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC---c---EEEEeecCCe
Q 040987 234 EMKEPQVITIS--SSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ---R---IVAAGDVTGR 304 (762)
Q Consensus 234 ~~~~v~~~~~s--pdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~---~l~~~~~dg~ 304 (762)
.....+.+++. ...++||++ ....|.||-....... ........|...|-+++|-++. . +|++++-.|.
T Consensus 162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r--~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~ 239 (717)
T PF08728_consen 162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER--FYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE 239 (717)
T ss_pred cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc--cccccccccccCCCeeEeecCCCCCccceEEEEEeccCc
Confidence 34577899998 888899876 4566777755442111 0011122467789999998744 2 7888899999
Q ss_pred EEEEec
Q 040987 305 ILIWRG 310 (762)
Q Consensus 305 v~vw~~ 310 (762)
+.+|++
T Consensus 240 v~~~~I 245 (717)
T PF08728_consen 240 VWTFKI 245 (717)
T ss_pred EEEEEE
Confidence 999887
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.35 E-value=1.7 Score=43.57 Aligned_cols=165 Identities=15% Similarity=0.037 Sum_probs=94.5
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec--cCCC-CC----CeE-EEEeCCCCCeEEEEecCC
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRI-GS----PLL-YFTESPDPSLSSISCADN 416 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~-~~----~v~-~~~~s~~~~~l~~~~~d~ 416 (762)
.+..+......+..+-..|||+.++.-+. .++.++++.+..... +... ++ .|+ .+..-..|..+++...||
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 33445555667888889999999887765 678888887655421 1111 11 111 111233566778888888
Q ss_pred cEEEE-EcCCc-e----EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeeccc
Q 040987 417 QVHLL-KMPSM-E----IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 417 ~i~i~-d~~~~-~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
-|.-| |.+.+ . .++.++-.. ..+..+.-..+.+-++.-+.+|++..+.....+.+..-..
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~p----------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---- 356 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAP----------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---- 356 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCc----------ccceeeccccccceEEEEcCCCceeeeecccCcceehhhh----
Confidence 88776 33321 1 111111110 1222222222334466667778888776554433221111
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
...+..+++||.+.++++- +.+.++++.+++...
T Consensus 357 -------~~~~~~~~~Sp~~~~Ll~e----------~~gki~~~~l~Nr~P 390 (733)
T COG4590 357 -------YQAPQLVAMSPNQAYLLSE----------DQGKIRLAQLENRNP 390 (733)
T ss_pred -------hcCcceeeeCcccchheee----------cCCceEEEEecCCCC
Confidence 2346778999999999887 457899998886543
No 454
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.29 E-value=21 Score=38.53 Aligned_cols=87 Identities=7% Similarity=0.122 Sum_probs=57.8
Q ss_pred EecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 380 WQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 380 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.|+-.|+......|.+.|--+.++..+..|+.-...-.+.++|+.+.+....+ +.+.-+.|-|...
T Consensus 323 vdli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil--------------nfcsymqwvp~sd 388 (1636)
T KOG3616|consen 323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL--------------NFCSYMQWVPGSD 388 (1636)
T ss_pred eecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH--------------HHhhhheeccCcc
Confidence 56666776777788888888888888877777666667888888753322111 2345678888877
Q ss_pred EEEEeecCceEEEE-EcCCCCce
Q 040987 460 LVALRAENYCIHFY-SLLDDRGI 481 (762)
Q Consensus 460 ~l~~~~~dg~i~i~-d~~~~~~~ 481 (762)
.++.-+.|+ +.+| ++...+.+
T Consensus 389 vivaqn~dn-l~iwyn~d~peqv 410 (1636)
T KOG3616|consen 389 VIVAQNGDN-LCIWYNIDAPEQV 410 (1636)
T ss_pred eEEecCCCc-eEEEecCCcchhh
Confidence 777666665 6665 44444433
No 455
>PHA02790 Kelch-like protein; Provisional
Probab=91.24 E-value=13 Score=39.84 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=52.8
Q ss_pred CCCEEEEEecC---CeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 364 DGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 364 ~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+|+..+.||.+ ..+..||.++.+.........+... .+..-+++..+.| |.+.+||..+.+-.. +.....+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~-~~~m~~~- 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTL-IDDPIYP- 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeE-cCCCCCC-
Confidence 66666777654 3477899888877654443322211 1223455555555 456788887643321 1111100
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCC
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDD 478 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~ 478 (762)
.... +++ .-+++..++|+.+ ..+..||..++
T Consensus 437 ------r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 437 ------RDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ------cccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 0111 222 2356777777754 34666666544
No 456
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.22 E-value=1.4 Score=41.12 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=56.9
Q ss_pred EcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc-------cCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 563 FHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS-------YKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 563 ~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
+..++.+|++.+.+|.+++||+.+++...... ....... .....|..+.++.+|.-|++-++|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~----Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV----SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc----cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 44568899999999999999999887654431 0111111 356788999999999988887888899998
Q ss_pred CCCCeEEEE
Q 040987 636 PDRNVLVAV 644 (762)
Q Consensus 636 ~~~~~~~~~ 644 (762)
.+-+.-+..
T Consensus 94 ~~L~~W~~v 102 (219)
T PF07569_consen 94 PDLGCWIRV 102 (219)
T ss_pred cccceeEEe
Confidence 876655443
No 457
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.04 E-value=9.6 Score=37.39 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=91.0
Q ss_pred eEEEEecCCCceeccC-------CCCCCeEEEEeCCCC-----CeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCC-
Q 040987 376 VLVVWQLDTGKKKFLP-------RIGSPLLYFTESPDP-----SLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPL- 441 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~-------~~~~~v~~~~~s~~~-----~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~- 441 (762)
.|.+||+.+++..... ...+.+..+.+.... .+++.+.. .+.+.|+|+.+++..+.+..+..+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5777888887763221 123456677765522 23444433 358999999999888877664332210
Q ss_pred --------CCcccCceeeEEEeC---CCCEEEEeecCceEEEEEcCC-----CCceeeEEeecccccCCCCcceeEEEEE
Q 040987 442 --------PEEYKGLCRDIAFNH---DGGLVALRAENYCIHFYSLLD-----DRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 442 --------~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
.......+..++.+| ++++|....-.+ -++|.+.+ ....... ..................++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~-~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ-ALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH--HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccc-cccccceeccccCCCCceEE
Confidence 000112355556555 555555544322 12222211 1100000 00000000000012456788
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC--CCCeEEEEe
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP--NRRAAVSSS 574 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp--d~~~l~~~~ 574 (762)
++++|.++.+-- ..+.|..|+..+.-....+.........-....++.+.+ +|.+.+.+.
T Consensus 193 ~D~~G~ly~~~~---------~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 193 IDPNGNLYFTDV---------EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EETTTEEEEEEC---------CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ECCCCcEEEecC---------CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899888887776 778999999887332222222211222134678888888 776666553
No 458
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.04 E-value=6.9 Score=43.70 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=55.4
Q ss_pred CCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC----------CCeE--EEE-e--------ccccCceeEEEEeCC---CC
Q 040987 607 KKKAMTAAAFSADGSVLAVAAETVITLWDPD----------RNVL--VAV-I--------GETLTPIMNMSFVGS---SE 662 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~----------~~~~--~~~-l--------~~~~~~v~~~~~s~d---g~ 662 (762)
..-.|..+.++|+|++||..+...|.|-.+- .|+. .+. + ..+...|..+.|+|. +.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3468899999999999999885555554442 1211 111 1 123345899999995 58
Q ss_pred EEEEEEcCCCCeEEEEECCCCceee
Q 040987 663 YLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 663 ~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
.|+.-..|+. +++||+......+
T Consensus 163 ~l~vLtsdn~--lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 163 HLVVLTSDNT--LRLYDISDPQHPW 185 (717)
T ss_pred eEEEEecCCE--EEEEecCCCCCCe
Confidence 9999999998 9999998755433
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.79 E-value=1.1 Score=28.45 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=24.9
Q ss_pred cCCCEEEEEe--CCEEEEEEcccceEEeeecC
Q 040987 83 NDVKRLLVCT--SNTVSIFSTSTGLQISSLEG 112 (762)
Q Consensus 83 ~dg~~la~~~--~~~i~iwd~~~~~~~~~l~~ 112 (762)
||+++|.++. ++.|.++|..+++.+.++.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6788877776 49999999999998887765
No 460
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.60 E-value=8.9 Score=31.86 Aligned_cols=124 Identities=12% Similarity=0.146 Sum_probs=77.2
Q ss_pred EEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec--
Q 040987 286 VLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS-- 363 (762)
Q Consensus 286 ~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-- 363 (762)
.-.|......|+.++..|+|.|++.......... ....+..+ .-...|++++-.+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~----------------------~~~~i~~L-Nin~~italaaG~l~ 59 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR----------------------QDSDISFL-NINQEITALAAGRLK 59 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc----------------------ccCceeEE-ECCCceEEEEEEecC
Confidence 3456666678899999999999987554322110 00112222 2345566664432
Q ss_pred ---CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCC---CCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 364 ---DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESP---DPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 364 ---~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
+...|+.|+. ..+..||++.....+.......+.++.+-. ...-++..+.+-.|.-||....+...+..
T Consensus 60 ~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 60 PDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CCCCcCEEEEecc-ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 2345666654 689999999999888888888888887732 22334444456677777777666555543
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.47 E-value=24 Score=36.49 Aligned_cols=150 Identities=10% Similarity=0.107 Sum_probs=82.8
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcE
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDF 579 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i 579 (762)
....+..++||.+++.+. ....++-||-. ...+.... .+. ...+.++.+.+++..++++ .+|.+
T Consensus 240 sf~~v~~~~dG~~~~vg~---------~G~~~~s~d~G--~~~W~~~~---~~~-~~~l~~v~~~~dg~l~l~g-~~G~l 303 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSS---------RGNFYLTWEPG--QPYWQPHN---RAS-ARRIQNMGWRADGGLWLLT-RGGGL 303 (398)
T ss_pred ceeeEEEcCCCCEEEEEC---------CccEEEecCCC--CcceEEec---CCC-ccceeeeeEcCCCCEEEEe-CCceE
Confidence 345567788998888885 22222233322 11111110 222 5578899999999887766 45654
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEe---ccccCceeEEE
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVI---GETLTPIMNMS 656 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l---~~~~~~v~~~~ 656 (762)
++....+..-... .|.... .......++++.|.+++..+++|..|.+.... +.|+--... ..-..+.+.+.
T Consensus 304 -~~S~d~G~~~~~~---~f~~~~-~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~ 377 (398)
T PLN00033 304 -YVSKGTGLTEEDF---DFEEAD-IKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVK 377 (398)
T ss_pred -EEecCCCCccccc---ceeecc-cCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEE
Confidence 3333333211000 000000 00123458899999999999999888776664 334332222 22345688999
Q ss_pred EeCCCCEEEEEEcCCC
Q 040987 657 FVGSSEYLVATSWGSK 672 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~ 672 (762)
|.++++.++++ .+|.
T Consensus 378 f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 378 FFDDKKGFVLG-NDGV 392 (398)
T ss_pred EcCCCceEEEe-CCcE
Confidence 98876655554 5554
No 462
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.38 E-value=14 Score=40.65 Aligned_cols=125 Identities=10% Similarity=0.072 Sum_probs=72.1
Q ss_pred ceeeEEEeC--CCCEEEEeecCceEEEEEcCCCC-----ceeeEEe-ec-ccccC--CCCcceeEEEEEEe--cCCCeEE
Q 040987 448 LCRDIAFNH--DGGLVALRAENYCIHFYSLLDDR-----GISEVQV-CE-RNHQP--GDDVTVVVTLVALS--QDGSLMS 514 (762)
Q Consensus 448 ~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~-~~-~~~~~--~~~~~~~v~~~~~s--p~g~~l~ 514 (762)
.|..+.... +...|+++.+||.|.+|.+++-- ....... .. ....| .......+..++++ ...++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 344443333 45678999999999999763210 0000000 00 00000 00114568889998 8888999
Q ss_pred EEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC---C---eEEEEeCCCcEEEEEc
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR---R---AAVSSSYGGDFKVWIC 584 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~---~---~l~~~~~dg~i~iwd~ 584 (762)
+++ ....|.||-............. ..+ ...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 182 VSs---------Ns~~VTVFaf~l~~~r~~~~~s--~~~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSS---------NSQEVTVFAFALVDERFYHVPS--HQH-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Eec---------CCceEEEEEEeccccccccccc--ccc-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 998 5667777665542211111100 123 4588899997753 2 7788888999999888
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.05 E-value=6.9 Score=40.10 Aligned_cols=148 Identities=13% Similarity=0.076 Sum_probs=85.4
Q ss_pred EeCCCCEEEE-eecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC--------CeEEEEeeeccccC
Q 040987 454 FNHDGGLVAL-RAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG--------SLMSTVDIKLAEEG 524 (762)
Q Consensus 454 ~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--------~~l~~~~~~~~~~~ 524 (762)
...|..+|.. +.....++-.|+..|+.+.+.... ..+ -+.|.|+. +.|+-.+
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~-----------ddv-vVqy~p~~kf~qmt~eqtlvGlS------- 535 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLK-----------DDV-VVQYNPYFKFQQMTDEQTLVGLS------- 535 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecC-----------Ccc-eeecCCchhHHhcCccceEEeec-------
Confidence 3444444443 445567888888888887776653 223 55666643 2333332
Q ss_pred CCceeEEEEEEecCCC-ceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeee
Q 040987 525 IGSLVCLKFWVSGTQN-KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603 (762)
Q Consensus 525 ~~~d~~i~iwd~~~~~-~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 603 (762)
+..|.-.|.+-.. .+.......+.+ .....+..-. ...++|.++..|.|++||--.......+
T Consensus 536 ---~~svFrIDPR~~gNKi~v~esKdY~t--Kn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtal---------- 599 (776)
T COG5167 536 ---DYSVFRIDPRARGNKIKVVESKDYKT--KNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTAL---------- 599 (776)
T ss_pred ---ccceEEecccccCCceeeeeehhccc--cccccccccc-cCceEEEecCCCceeeehhhcchhhhcC----------
Confidence 2334333443222 222111101111 1222222222 3458999999999999997654444333
Q ss_pred cccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 040987 604 GSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637 (762)
Q Consensus 604 ~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~ 637 (762)
++-...|..+..+.+|+++.+.....+.+-|+.
T Consensus 600 -P~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 600 -PGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred -cccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 245788999999999999888777788888764
No 464
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.58 E-value=3 Score=38.88 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=48.3
Q ss_pred EecCCCEEEEEecCCeEEEEecCCCceeccC---------------CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 361 FSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP---------------RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+..++++|++.+.+|.+++||+.+++..... .....|..+.++.+|.-+++- .+|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 4457889999999999999999998763211 244577888888888777665 457788888764
Q ss_pred c
Q 040987 426 M 426 (762)
Q Consensus 426 ~ 426 (762)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 465
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.33 E-value=1.9 Score=27.41 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 618 ADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 618 ~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
|+++.|.++. +++|.++|..+++.+..+.... .-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence 6788887775 7999999999998888776532 2334444
No 466
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.99 E-value=28 Score=35.29 Aligned_cols=211 Identities=13% Similarity=0.106 Sum_probs=105.4
Q ss_pred CCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE----eCCCCE--EEEeecC----ceEEEE
Q 040987 404 PDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF----NHDGGL--VALRAEN----YCIHFY 473 (762)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~--l~~~~~d----g~i~i~ 473 (762)
|...+++....++.+.+||+. |+.++.+.. +.+..+.. .-+|+. |++++.. ..|++|
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~------------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f 132 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV------------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLF 132 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S------------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC------------CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEE
Confidence 445567777778899999998 556666542 22333222 113443 4555432 579999
Q ss_pred EcCCCC-ceeeEEeecccccCCCCcceeEEEEEE--ec-CCCeEEEEeeeccccCCCceeEEEEEEecC---CCceeEEE
Q 040987 474 SLLDDR-GISEVQVCERNHQPGDDVTVVVTLVAL--SQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGT---QNKEFTLS 546 (762)
Q Consensus 474 d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~~ 546 (762)
.+.... .+..+.... + +.......+..+++ +| +|++.+.... .+|.+..|.+.. +....++.
T Consensus 133 ~id~~~g~L~~v~~~~--~-p~~~~~~e~yGlcly~~~~~g~~ya~v~~--------k~G~~~Qy~L~~~~~g~v~~~lV 201 (381)
T PF02333_consen 133 RIDPDTGELTDVTDPA--A-PIATDLSEPYGLCLYRSPSTGALYAFVNG--------KDGRVEQYELTDDGDGKVSATLV 201 (381)
T ss_dssp EEETTTTEEEE-CBTT--C--EE-SSSSEEEEEEEE-TTT--EEEEEEE--------TTSEEEEEEEEE-TTSSEEEEEE
T ss_pred EecCCCCcceEcCCCC--c-ccccccccceeeEEeecCCCCcEEEEEec--------CCceEEEEEEEeCCCCcEeeEEE
Confidence 876422 222211100 0 00000223566666 43 4665555542 667788887753 22211111
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc--CCC-cEE
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS--ADG-SVL 623 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~dg-~~l 623 (762)
. .+.. ...+..++......+|+.+-++.-|+-|+.+........ .............|..|++- ++| .||
T Consensus 202 R-~f~~--~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~----~v~~~~g~~l~aDvEGlaly~~~~g~gYL 274 (381)
T PF02333_consen 202 R-EFKV--GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRT----LVASADGDGLVADVEGLALYYGSDGKGYL 274 (381)
T ss_dssp E-EEE---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--E----EEEEBSSSSB-S-EEEEEEEE-CCC-EEE
T ss_pred E-EecC--CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcce----eeecccccccccCccceEEEecCCCCeEE
Confidence 1 1111 447888889888889999988877777776532211100 00001122335677777774 344 366
Q ss_pred EEEc--CCeEEEEeCCCC-eEEEEe
Q 040987 624 AVAA--ETVITLWDPDRN-VLVAVI 645 (762)
Q Consensus 624 a~~~--d~~i~iwd~~~~-~~~~~l 645 (762)
++++ +++..||+.+.. ..+..+
T Consensus 275 ivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 275 IVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEEcCCCCeEEEEecCCCCcccceE
Confidence 6665 899999998853 444433
No 467
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.58 E-value=0.68 Score=50.37 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=76.4
Q ss_pred ceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCcee-----------ecCCCEEEEEe-CCEEEEEEc-----ccc
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAF-----------SNDVKRLLVCT-SNTVSIFST-----STG 104 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~-----------s~dg~~la~~~-~~~i~iwd~-----~~~ 104 (762)
...++..+..+|.|++.+...-.+..+++|..+++. ++| ||||+.+|.+. ||.+..|-+ ..-
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d-~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTD-MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHHHHHHhcCCCccc-HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 356888888999999999888777888889988886 665 89999999988 776666654 334
Q ss_pred eEEeeecCCc-cceeEEEEeCCCCcc---cceeeeEEeee-cCCeEEEEeCCCcceE
Q 040987 105 LQISSLEGHK-APVTTVIVVPASTPA---TKILSYCWTAS-LDGTIKYWDFSVPELL 156 (762)
Q Consensus 105 ~~~~~l~~h~-~~V~~v~~s~~~~~~---~~l~~~l~s~s-~d~~i~vWd~~~~~~~ 156 (762)
++++..+.|+ .+-.|.-|......- ++- .++++++ ....+++|.-..-+|+
T Consensus 273 rclhewkphd~~p~vC~lc~~~~~~~v~i~~w-~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW-VLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCCCCCCCceeeeeccccccCCcccee-EEEEecccCCcceeEeeccchhhh
Confidence 4666667777 333333344432100 011 2344444 3567999998877776
No 468
>PRK13615 lipoprotein LpqB; Provisional
Probab=88.47 E-value=40 Score=36.44 Aligned_cols=161 Identities=11% Similarity=-0.083 Sum_probs=89.2
Q ss_pred EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC
Q 040987 398 LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 477 (762)
.+++.++++..++....++.+.++... +.....+.+ ..+..-.|.+++ .+-+.-.....++.....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~------------~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~ 402 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTR------------PGLVAPSLDAQG-YVWSTPASDPRGLVAWGP 402 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-CcceeeccC------------CccccCcCcCCC-CEEEEeCCCceEEEEecC
Confidence 678999999999888777767766554 222222222 234566777776 444433333344444332
Q ss_pred CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEE-EE-EeecCCC
Q 040987 478 DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTL-ST-IVYEPHR 554 (762)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~-~~-~~~~~h~ 554 (762)
............ ....|..+..|+||-.++..... ++.++|.+--+.. +.....+ .. ......
T Consensus 403 ~G~~~~v~v~~~-------~~~~I~~lrvSrDG~R~Avi~~~------~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~- 468 (557)
T PRK13615 403 DGVGHPVAVSWT-------ATGRVVSLEVARDGARVLVQLET------GAGPQLLVASIVRDGGVPTSLTTTPLELLAS- 468 (557)
T ss_pred CCceEEeecccc-------CCCeeEEEEeCCCccEEEEEEec------CCCCEEEEEEEEeCCCcceEeeeccEEcccC-
Confidence 112222221111 14579999999999988876410 1335566643332 3323333 21 112222
Q ss_pred CCceEEEEEcCCCCeEEEEe---CCCcEEEEEccc
Q 040987 555 DAGISAVAFHPNRRAAVSSS---YGGDFKVWICND 586 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~---~dg~i~iwd~~~ 586 (762)
...+.++.|..++.+++.+. .+..+++..+..
T Consensus 469 l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 469 PGTPLDATWVDELDVATLTLAPDGERQVELHQVGG 503 (557)
T ss_pred cCcceeeEEcCCCEEEEEeccCCCCceEEEEECCC
Confidence 44889999999998766653 234566666653
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.20 E-value=2.4 Score=37.90 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=26.1
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
.|.+++|||.|=. ..---+|+....++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~-~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG-PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC-CCCceEEEEEcCCCeEEEEecCC
Confidence 7999999996510 00014688889999999998764
No 470
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=88.05 E-value=42 Score=36.18 Aligned_cols=187 Identities=13% Similarity=0.079 Sum_probs=110.8
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
+.|.++| .+.+.+..+..... ...|.++.|--|--+++|-- .---+.+.|+...+.+..+..
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~--------gE~IysvRF~Gd~~Y~VTFr---------qvDPLfviDLsdP~~P~vlGe 365 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAP--------GERIYSVRFMGDRAYLVTFR---------QVDPLFVIDLSDPANPKVLGE 365 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCC--------CceEEEEEEeCCeEEEEEEe---------ecCceEEEECCCCCCCceeeE
Confidence 5677777 55555555543332 56799999998888888875 334688899988887777665
Q ss_pred EeecCCCCCceEEEEEcC--CCCeEEEEeCCC-----------cEEEEEcccccccccccCCceeeeeecccCCCCeEEE
Q 040987 548 IVYEPHRDAGISAVAFHP--NRRAAVSSSYGG-----------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA 614 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~sp--d~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 614 (762)
+...|. ..- ++| ++.+|-.|-... .|.+||+......................-...-.++
T Consensus 366 LKIPGf-S~Y-----LHP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAf 439 (521)
T PF09826_consen 366 LKIPGF-SDY-----LHPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAF 439 (521)
T ss_pred EECccc-hhc-----eeECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEE
Confidence 544444 222 334 334444443221 3678999876654443200000000000111223478
Q ss_pred EEcCCCcEEEEEc--------CCeEEEEeCC--CC-eEEEEeccccC------ceeEEEEeCCCCEEEEEEcCCCCeEEE
Q 040987 615 AFSADGSVLAVAA--------ETVITLWDPD--RN-VLVAVIGETLT------PIMNMSFVGSSEYLVATSWGSKPQLSV 677 (762)
Q Consensus 615 ~~s~dg~~la~~~--------d~~i~iwd~~--~~-~~~~~l~~~~~------~v~~~~~s~dg~~l~s~~~d~~~~v~v 677 (762)
.|.++.++|+.-- -..+.|+++. .| +....+..... .+....+..| .|.+.+.++ |++
T Consensus 440 l~~~~~~ll~~Pv~~~~~~~~~~g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~lyi~d--~lYtvS~~~---i~~ 514 (521)
T PF09826_consen 440 LFDKEKNLLAFPVSSSYGYFNFQGAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLYIGD--TLYTVSDNG---IKA 514 (521)
T ss_pred EEeCCCCEEEEEEEEccCccccceEEEEEEeCCCCeEEEEEEEccCcccccccceeEEEEECC--EEEEEECCE---EEE
Confidence 8888888877532 2567788777 33 45555553332 2666667654 788888777 999
Q ss_pred EECCCC
Q 040987 678 WNMSKL 683 (762)
Q Consensus 678 wd~~~~ 683 (762)
+|+++.
T Consensus 515 ~~l~t~ 520 (521)
T PF09826_consen 515 YDLNTL 520 (521)
T ss_pred EehHhc
Confidence 998875
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.74 E-value=37 Score=35.19 Aligned_cols=59 Identities=8% Similarity=0.205 Sum_probs=44.2
Q ss_pred CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
..++.+-+.||.+.+|+-+.....+.+.+.. -...++|.+....+++++.+..+..|..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l-----------lPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFL-----------LPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCC-----------CCcCeEEeecCCEEEEecCceeEEEecH
Confidence 3577888899999999988655455554422 2245788888888999998888888865
No 472
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.54 E-value=19 Score=34.02 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=79.4
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCCCCceeeEEeecccccCC
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLDDRGISEVQVCERNHQPG 494 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~ 494 (762)
-.+||+.+++... +.-.. +-.+.+-++.+||++|.+|+.. ..+++++.................
T Consensus 48 s~~yD~~tn~~rp-l~v~t---------d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m--- 114 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQT---------DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM--- 114 (243)
T ss_pred EEEEecCCCcEEe-ccCCC---------CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc---
Confidence 4578888765432 22211 1344556788999999988743 357788765411111111000000
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC-CceeEEEEEee--cCCCCCceEEEEEcCCCCeEE
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ-NKEFTLSTIVY--EPHRDAGISAVAFHPNRRAAV 571 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~--~~h~~~~v~~~~~spd~~~l~ 571 (762)
.....-..+..-|||+.|+.|+. ...+..+|..... .....+..... ......----+...|||++++
T Consensus 115 -~~~RWYpT~~~L~DG~vlIvGG~--------~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi 185 (243)
T PF07250_consen 115 -QSGRWYPTATTLPDGRVLIVGGS--------NNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFI 185 (243)
T ss_pred -cCCCccccceECCCCCEEEEeCc--------CCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEE
Confidence 00334445566789999999974 2334455554221 11111110000 000011223467789999999
Q ss_pred EEeCCCcEEEEEcccccccccc
Q 040987 572 SSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
.+..+ -.|||..+.+.+..+
T Consensus 186 ~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 186 FANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred EEcCC--cEEEeCCCCeEEeeC
Confidence 88764 457798887665544
No 473
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.34 E-value=42 Score=35.42 Aligned_cols=112 Identities=10% Similarity=0.128 Sum_probs=61.5
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEccc-ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICND-ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVIT 632 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~ 632 (762)
...|+.+++..+|+.- .++...-+..|+.++ +...... .......|..+.=.|+++ |..|+ +|-++
T Consensus 375 g~nit~~~~d~~g~lW-lgs~q~GLsrl~n~n~~avlde~----------agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 375 GMNITTTLEDSRGRLW-LGSMQNGLSRLDNKNEWAVLDED----------AGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred ccccchhhhccCCcEE-EEecccchhhhccCCcccccccc----------cCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 4466667776655544 344443355566554 2111111 122356788888888988 55666 66544
Q ss_pred EEeCCCCeEEEEec--cc---cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 633 LWDPDRNVLVAVIG--ET---LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 633 iwd~~~~~~~~~l~--~~---~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
. +.+.++....+. .| .+.+..+.+-|+|+.-+.+ .+| |..|+....
T Consensus 443 ~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g---va~~~sq~~ 493 (671)
T COG3292 443 R-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAA-GSG---VAAWESQRR 493 (671)
T ss_pred c-CccccchhcccccccCcCCcchhhhhccCCCCceEEEe-cce---eeeeccccc
Confidence 3 555544333322 12 2337788899998754433 355 777765543
No 474
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.26 E-value=11 Score=35.58 Aligned_cols=150 Identities=13% Similarity=0.032 Sum_probs=79.6
Q ss_pred EEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEecC---CcEEEEEcCC---ceEEEEEccCCCCCCCCCcccCce
Q 040987 377 LVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCAD---NQVHLLKMPS---MEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 377 i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
-.+||+.+++...+.-.. .-...-.+-+||+++.+|+.. ..+++++..+ .......... . ....+-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~---m----~~~RWY 120 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND---M----QSGRWY 120 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc---c----cCCCcc
Confidence 457888888775443222 223334577899999988752 3577777543 1111110000 0 011344
Q ss_pred eeEEEeCCCCEEEEeecCc-eEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 450 RDIAFNHDGGLVALRAENY-CIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
.....-|||+.|+.|+... ...+|..... .....+........ .....--..+-..|||+.++.+. .
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~--~~~~nlYP~~~llPdG~lFi~an---------~ 189 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD--TLPNNLYPFVHLLPDGNLFIFAN---------R 189 (243)
T ss_pred ccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc--cCccccCceEEEcCCCCEEEEEc---------C
Confidence 5667788999999998774 3444443221 11112111111000 00012223566789999999886 2
Q ss_pred eeEEEEEEecCCCceeEEE
Q 040987 528 LVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~ 546 (762)
.-.|||..+.+.+..+.
T Consensus 190 --~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 190 --GSIIYDYKTNTVVRTLP 206 (243)
T ss_pred --CcEEEeCCCCeEEeeCC
Confidence 45677888776555543
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=7.8 Score=44.84 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=53.2
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEcc----Cchhh----------------hheeeeeeeccCcCeEEEEEcCCCc
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVP----DVEAE----------------RVVMRKITLHHTKKLTVLAFHPTQR 294 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~----~~~~~----------------~~~~~~~~~~~~~~v~~~~~sp~~~ 294 (762)
...|.++....+|+.+.+|.|| .+|.+. .+-.. ...+.++...+.++|..++....-+
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 4467888888999999998888 444432 11000 0001122235678999999988888
Q ss_pred EEEEeecCCeEEEEeccCC
Q 040987 295 IVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 295 ~l~~~~~dg~v~vw~~~~~ 313 (762)
.+.+-+..|+|++|++..+
T Consensus 256 IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeeeccCceEEEEEccCC
Confidence 8889999999999998763
No 476
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.76 E-value=39 Score=34.35 Aligned_cols=192 Identities=14% Similarity=0.155 Sum_probs=105.7
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE----EecCCCE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI----FSSDGAY 367 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~----~s~~g~~ 367 (762)
...+++....++-+.+||+.+.+... +. .+.++.+. |.-+|+.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~-------------------------------~~--~Gr~NNVDvrygf~l~g~~ 113 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQS-------------------------------LP--VGRPNNVDVRYGFPLNGKT 113 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEE-------------------------------E---SS-EEEEEEEEEEEETTEE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEe-------------------------------ec--CCCcceeeeecceecCCce
Confidence 44567777788899999997764322 11 11222221 1224443
Q ss_pred --EEEEe-cC---CeEEEEecC--CCceeccCC-------CCCCeEEEEe--CC-CCC-eEEEEecCCcEEEEEcC---C
Q 040987 368 --LYSGG-KE---GVLVVWQLD--TGKKKFLPR-------IGSPLLYFTE--SP-DPS-LSSISCADNQVHLLKMP---S 425 (762)
Q Consensus 368 --l~s~~-~d---g~i~~wd~~--~~~~~~~~~-------~~~~v~~~~~--s~-~~~-~l~~~~~d~~i~i~d~~---~ 425 (762)
|+.++ .+ .+|++|.+. ++....+.. .-..+..+++ ++ +|. +.++...+|.+..|.+. .
T Consensus 114 vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~ 193 (381)
T PF02333_consen 114 VDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGD 193 (381)
T ss_dssp EEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TT
T ss_pred EEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCC
Confidence 34443 22 468888765 344332221 1123566665 44 455 45556678888877764 2
Q ss_pred c----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce-eeEEeecccccCCCCccee
Q 040987 426 M----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI-SEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 426 ~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 500 (762)
+ ++++.|... +.+..++.......|..+-++.-|+-|+....... ..+.....+ ......
T Consensus 194 g~v~~~lVR~f~~~-----------sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g----~~l~aD 258 (381)
T PF02333_consen 194 GKVSATLVREFKVG-----------SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG----DGLVAD 258 (381)
T ss_dssp SSEEEEEEEEEE-S-----------S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS----SSB-S-
T ss_pred CcEeeEEEEEecCC-----------CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccc----cccccC
Confidence 3 456666643 46788999998889999999988888888644322 122211111 112566
Q ss_pred EEEEEEec--CC-CeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 501 VTLVALSQ--DG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 501 v~~~~~sp--~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
+..+++-. ++ .||++++. ++++..+|+.+..
T Consensus 259 vEGlaly~~~~g~gYLivSsQ--------G~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 259 VEGLALYYGSDGKGYLIVSSQ--------GDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEEEE-CCC-EEEEEEEG--------GGTEEEEEESSTT
T ss_pred ccceEEEecCCCCeEEEEEcC--------CCCeEEEEecCCC
Confidence 77777743 44 36666664 7889999998864
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.34 E-value=69 Score=36.82 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=49.8
Q ss_pred ccCCCceEEEEC---C----CCCEEEEEeCCeEEEEEccCchh-----------hhheeeeeeec--cCcCeEEEEEcC-
Q 040987 233 AEMKEPQVITIS---S----SGKYFGIRKQRKLLIWKVPDVEA-----------ERVVMRKITLH--HTKKLTVLAFHP- 291 (762)
Q Consensus 233 ~~~~~v~~~~~s---p----dg~~la~~~~~~i~iwd~~~~~~-----------~~~~~~~~~~~--~~~~v~~~~~sp- 291 (762)
....+|..|+|+ . ..++|++-....+.|+...-.+. ...++..+... ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788889998 2 23578888888888888221111 11122222211 233567888988
Q ss_pred CCcEEEEeecCCeEEEEec
Q 040987 292 TQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~ 310 (762)
+.+.||+-...|.-.||++
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEEEeccCcEEEEEe
Confidence 5568888889999999998
No 478
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.32 E-value=33 Score=33.18 Aligned_cols=236 Identities=10% Similarity=0.037 Sum_probs=123.0
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCC-----CceeeEEeecccccCCCCcceeEEEEEEecCCCe----------
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDD-----RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL---------- 512 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~---------- 512 (762)
.-+.++++|.+.+.++....+...+||.... ............- .......+.+.|+....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~---~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP---LAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC---CCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 4478999999988888888899999998621 1111111111000 001334667777654333
Q ss_pred --EEEEeeeccccCCCceeEEEEEEecCCCce--eEEEEEeecCCCCCceEEEEEcCC--CCeEEEE-eCCCcEEEEEcc
Q 040987 513 --MSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--FTLSTIVYEPHRDAGISAVAFHPN--RRAAVSS-SYGGDFKVWICN 585 (762)
Q Consensus 513 --l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~h~~~~v~~~~~spd--~~~l~~~-~~dg~i~iwd~~ 585 (762)
++.++ ++++|.-|...-.... ..... ........--..+++... +.+|..+ -..++|.+||-.
T Consensus 101 a~Fif~t---------EdGTisaW~p~v~~t~~~~~~~~-~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 101 SRFLFVT---------EDGTLSGWAPALGTTRMTRAEIV-VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred eeEEEEe---------CCceEEeecCcCCcccccccEEE-EccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 34444 7889999986543321 10100 011110122344555533 4455444 356889998865
Q ss_pred ccccccc--ccCCceeeeeecccCCCCeEE---------EEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec--cccCc
Q 040987 586 DELQQKD--LQSSGWSCHAVGSYKKKAMTA---------AAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG--ETLTP 651 (762)
Q Consensus 586 ~~~~~~~--~~~~~~~~~~~~~~~~~~i~~---------~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~--~~~~~ 651 (762)
-.+.... +.++... ..+..-.|.. ..-.++++.=+.|. -|.|-+||.. |.+++.+. +.-..
T Consensus 171 f~~~~~~g~F~DP~iP----agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNa 245 (336)
T TIGR03118 171 FRPPPLPGSFIDPALP----AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNA 245 (336)
T ss_pred cccccCCCCccCCCCC----CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccC
Confidence 4432211 1000000 0000111111 11111221111121 4789999988 66777663 23334
Q ss_pred eeEEEEeC------CCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeecceeeeeeec
Q 040987 652 IMNMSFVG------SSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVEGQFGYASIY 703 (762)
Q Consensus 652 v~~~~~s~------dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 703 (762)
-+.|+..| .|.+|+---.||+ |..+|..+|+.+-.+.......+....++
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~--InaFD~~sG~~~g~L~~~~G~pi~i~GLW 301 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGT--INAYDPQSGAQLGQLLDPDNHPVKVDGLW 301 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCce--eEEecCCCCceeeeecCCCCCeEEecCeE
Confidence 56777755 5777887777887 99999999988776666554444444333
No 479
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.56 E-value=74 Score=36.46 Aligned_cols=101 Identities=9% Similarity=0.046 Sum_probs=55.2
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC--eEEEEe-----------CCCcEEEEEccc-ccccccccC
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR--AAVSSS-----------YGGDFKVWICND-ELQQKDLQS 595 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~--~l~~~~-----------~dg~i~iwd~~~-~~~~~~~~~ 595 (762)
.|+++|..++..+..+..... .. .-.+..+.|+.... +++++. .+|.++.|++-. ++....+.+
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~n-e~-a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~ 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQN-EA-AFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCC-cc-hhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec
Confidence 588888887776555432211 11 23466667765433 334333 234567776533 332222211
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEE
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVA 643 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~ 643 (762)
.. -.+.+ .+..|-..++.+|-...+++||+...++++
T Consensus 932 T~---------~~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLR 968 (1205)
T KOG1898|consen 932 TE---------IPGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLR 968 (1205)
T ss_pred cC---------CCccc--eEEeccCCEEEEecccEEEEeeCChHHHHh
Confidence 11 12233 455677778777778899999998765544
No 480
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=20 Score=37.18 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=21.1
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
-.|..+..++.|..++-.|.+|.+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 357788889999999988888865543
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=20 Score=41.98 Aligned_cols=72 Identities=7% Similarity=0.040 Sum_probs=45.6
Q ss_pred CCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 607 KKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
+...+.+..+....+.+.....+.+-+|+.........+ .+....++.++..++++..||. +.+||...+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~h~Dgs--~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAY-----LPNGQLESRDGSHFVSYHTDGS--YAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCcceeeeeeeeeehhcccccchhhc-----ccccccCccCCceEEEEEecCC--EEeeecCCCce
Confidence 344555555555555555555666777766544332222 2222222889999999999998 99999999866
No 482
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=85.17 E-value=61 Score=35.14 Aligned_cols=261 Identities=12% Similarity=0.068 Sum_probs=113.6
Q ss_pred cCCCcEEEEeecCCeEEEEeccCCce-eecccccccccccccccCCCCcccCCccccceeeecc-ccceeEEEEecCC-C
Q 040987 290 HPTQRIVAAGDVTGRILIWRGFGDRT-FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH-PSEVSVLIFSSDG-A 366 (762)
Q Consensus 290 sp~~~~l~~~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~g-~ 366 (762)
..++..++.+..+|.+....+..... +. +..+ +. .....++.+..+| .
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~----------------------------i~~~-g~~~~~~s~l~~l~~g~d 269 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSIS----------------------------ITYL-GTLCSIASSLTYLKNGGD 269 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEE----------------------------EEEE-EE--S-ESEEEEESTT--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEE----------------------------EEEc-CCcCChhheEEEEcCCCE
Confidence 45677888889999999888754321 00 1111 12 3345566666554 3
Q ss_pred EEEEEecCCe--EEEEecCCCceeccCCCCCCeEEEEeCCC----CC------eEEEEe---cCCcEEEEEcCCceE--E
Q 040987 367 YLYSGGKEGV--LVVWQLDTGKKKFLPRIGSPLLYFTESPD----PS------LSSISC---ADNQVHLLKMPSMEI--I 429 (762)
Q Consensus 367 ~l~s~~~dg~--i~~wd~~~~~~~~~~~~~~~v~~~~~s~~----~~------~l~~~~---~d~~i~i~d~~~~~~--~ 429 (762)
+|+.|+.-|. +..|....-+.......-+++..++..+. .. .|++++ .+|.+++..-.-+-. .
T Consensus 270 ~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~ 349 (504)
T PF10433_consen 270 YLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLE 349 (504)
T ss_dssp EEEEEESSS-EEEEEEESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--E
T ss_pred EEEEEEecCCcEEEEEeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeee
Confidence 6777776544 44444322222333344467888877421 11 455544 356777764322111 1
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcC---CCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLL---DDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
........ + ..++.+.... ++.+|+....+ .-+++.+. ....+.++ ... ++... ...+.+-.
T Consensus 350 ~~~~~l~~-v-------~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~-~~~-~f~~~---~~Tl~~~~ 415 (504)
T PF10433_consen 350 LASSELPG-V-------TGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEV-EED-GFDTD---EPTLAAGN 415 (504)
T ss_dssp EEEEEEST-E-------EEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE-----TS-SS---S-EEEEEE
T ss_pred eeccCCCC-c-------eEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhh-hhc-cCCCC---CCCeEEEE
Confidence 11111110 0 2333333322 24566665544 44566654 23333222 111 11110 12222222
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
+. + ..++=.. ...|++.+....+...... .+. ...|.+.+.. +.+++.+-.++.+..+.+.
T Consensus 416 ~~-~-~~ivQVt----------~~~i~l~~~~~~~~~~~w~----~~~-~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~ 476 (504)
T PF10433_consen 416 VG-D-GRIVQVT----------PKGIRLIDLEDGKLTQEWK----PPA-GSIIVAASIN--DPQVLVALSGGELVYFELD 476 (504)
T ss_dssp ET-T-TEEEEEE----------SSEEEEEESSSTSEEEEEE-----TT-S---SEEEES--SSEEEEEE-TTEEEEEEEE
T ss_pred cC-C-CeEEEEe----------cCeEEEEECCCCeEEEEEe----CCC-CCeEEEEEEC--CCEEEEEEeCCcEEEEEEE
Confidence 22 3 3333332 2468888877665544332 122 4566666664 3566666668889999887
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA 618 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 618 (762)
......... ..........|.|+..+|
T Consensus 477 ~~~~~~~~~------~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 477 DNKISVSDN------DETILELDNEISCLSIEP 503 (504)
T ss_dssp TTEEEEEEE----------EE-SS-EEEEE---
T ss_pred CCceeeeee------ccccccCCCceEEEEeCC
Confidence 665532221 000001356777877765
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.87 E-value=6.8 Score=35.03 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=25.0
Q ss_pred CeEEEEEcCCC------cEEEEeecCCeEEEEeccC
Q 040987 283 KLTVLAFHPTQ------RIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 283 ~v~~~~~sp~~------~~l~~~~~dg~v~vw~~~~ 312 (762)
.+..++|||-| -.||+...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 3788889999999998643
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.45 E-value=4.6 Score=25.14 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=17.7
Q ss_pred ccCceeEEEEeCCCCEEEEEEcC
Q 040987 648 TLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 648 ~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
.........|||||++|+.++..
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred CCccccCEEEecCCCEEEEEecC
Confidence 44567889999999999988755
No 485
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=84.12 E-value=1.1e+02 Score=37.28 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLW 634 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iw 634 (762)
...|++++.-.+ +.+++....|.+.... ..+...... ..+-.+.|..++...+..+.|...+|.++--
T Consensus 702 ~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~p~~l~----------~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 702 DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGRPVPLS----------RPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred cCcceeEEEEcC-CceEEeccCCcccccc-CCCCCccCC----------CCCCCcchhheeeccccceeEecCCCceeec
Confidence 456788887755 5566677788898888 555533322 2244688999999988888888788887765
Q ss_pred e
Q 040987 635 D 635 (762)
Q Consensus 635 d 635 (762)
+
T Consensus 770 ~ 770 (1774)
T PF11725_consen 770 P 770 (1774)
T ss_pred C
Confidence 4
No 486
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=83.95 E-value=69 Score=34.80 Aligned_cols=261 Identities=13% Similarity=0.031 Sum_probs=136.3
Q ss_pred CeEEEEeCCCCCeEEEEecC-----CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc--
Q 040987 396 PLLYFTESPDPSLSSISCAD-----NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-- 468 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-- 468 (762)
.+-.++.|||+++++.+-.. -.+++.|+.+++.+..... +...+++|.+|++.+.....|.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~------------~~~~~~~Wa~d~~~lfYt~~d~~~ 197 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT------------NTSGSFAWAADGKTLFYTRLDENH 197 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc------------ccccceEEecCCCeEEEEEEcCCC
Confidence 45667889999999876432 2688899988776544322 3457899999999888776542
Q ss_pred ---eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 469 ---CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 469 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
.+....+.+.....++...... ......+.-+...++|+....+ .....+++.+.+.......+
T Consensus 198 rp~kv~~h~~gt~~~~d~lvyeE~d-------~~f~~~v~~s~s~~yi~i~~~~------~~tsE~~ll~a~~p~~~p~v 264 (682)
T COG1770 198 RPDKVWRHRLGTPGSSDELVYEEKD-------DRFFLSVGRSRSEAYIVISLGS------HITSEVRLLDADDPEAEPKV 264 (682)
T ss_pred CcceEEEEecCCCCCcceEEEEcCC-------CcEEEEeeeccCCceEEEEcCC------CcceeEEEEecCCCCCceEE
Confidence 2333333332122222222111 2223444445566666655411 14567888887766554333
Q ss_pred EEEeecCCCCCceEEEEEcCCCC-eEEEEeCCC-cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEE
Q 040987 546 STIVYEPHRDAGISAVAFHPNRR-AAVSSSYGG-DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
......+| . ..+ ...+. +++-...+| ..+|+.... ......|... -.|...+.--.|+--.++|
T Consensus 265 v~pr~~g~-e---Y~~--eh~~d~f~i~sN~~gknf~l~~ap~-----~~~~~~w~~~---I~h~~~~~l~~~~~f~~~l 330 (682)
T COG1770 265 VLPRENGV-E---YSV--EHGGDRFYILSNADGKNFKLVRAPV-----SADKSNWREL---IPHREDVRLEGVDLFADHL 330 (682)
T ss_pred EEEcCCCc-E---Eee--eecCcEEEEEecCCCcceEEEEccC-----CCChhcCeee---eccCCCceeeeeeeeccEE
Confidence 22111222 1 111 12233 344444444 455555443 0111244322 2355556555666666677
Q ss_pred EEEc--C--CeEEEEeCCCCeEEEEeccccCceeEEEEeC--CCC--EEEEEEcCCCCeEEEEECCCCceeeEEEEeecc
Q 040987 624 AVAA--E--TVITLWDPDRNVLVAVIGETLTPIMNMSFVG--SSE--YLVATSWGSKPQLSVWNMSKLSISWSYLLHVEG 695 (762)
Q Consensus 624 a~~~--d--~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~--dg~--~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~~ 695 (762)
+... + ..|++++.++++....--.-..-...+..++ +.. ++-..|.--..++.=+|+.+++.....+.+.-+
T Consensus 331 Vl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~ 410 (682)
T COG1770 331 VLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG 410 (682)
T ss_pred EEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC
Confidence 7664 3 5788999988766542111111122333333 222 222233333334888899999887766666553
No 487
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=83.25 E-value=74 Score=34.60 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=41.1
Q ss_pred cCcccccCCceeecCCCEEEEEeC--C----EEEEEEcccceEEeeecCCccceeEEEEeCCCC
Q 040987 70 GGRSYVSSPPAFSNDVKRLLVCTS--N----TVSIFSTSTGLQISSLEGHKAPVTTVIVVPAST 127 (762)
Q Consensus 70 ~h~~~v~~~~~~s~dg~~la~~~~--~----~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~ 127 (762)
+|.-....+++.|||++++|.+-| | +++|-|+++|+.+-..- .+....++|.+|++
T Consensus 125 g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~ 186 (682)
T COG1770 125 GHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGK 186 (682)
T ss_pred cccceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCC
Confidence 333333335889999999999985 2 89999999998664332 33467789999995
No 488
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.11 E-value=21 Score=41.66 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=86.3
Q ss_pred ecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE--------EeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 413 CADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA--------FNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
+.|+.+.+|+.+++.....+.+.. ..|..+. |-|.=+++++.+..-.|.++-+.-.+.....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~s----------htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLS----------HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchh----------hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence 378999999999977777776655 3333332 3333344444444455666544322211111
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-------------------eeEE
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-------------------EFTL 545 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-------------------~~~~ 545 (762)
........ ..-....|.++....+|+.+.+| .|+.|+-.-...... ...+
T Consensus 166 ~~f~~~~~-i~~dg~~V~~I~~t~nGRIF~~G----------~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 166 SIFNTSFK-ISVDGVSVNCITYTENGRIFFAG----------RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred ccccccee-eecCCceEEEEEeccCCcEEEee----------cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 10000000 00004568899988999999888 455443222221110 0011
Q ss_pred EEEeec-CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 546 STIVYE-PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 546 ~~~~~~-~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
. ... .+ ..+|..++.......+.+-+..|+|++||+..
T Consensus 235 ~--~~~~~~-~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 L--SVPGSS-KDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred h--cCCCCC-CCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1 112 34 67899999998888999999999999999977
No 489
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.69 E-value=5.4 Score=43.75 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=30.8
Q ss_pred cceeEEEEeC----CCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEec
Q 040987 115 APVTTVIVVP----ASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVK 162 (762)
Q Consensus 115 ~~V~~v~~s~----~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~ 162 (762)
..+..++++. +. .+|++.+.|+++|+||+.+++++.+....
T Consensus 215 ~~~~~~~~~~~~~~~~-------~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-------TFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETT-------TEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCC-------CEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 3456666666 44 68899999999999999999998887644
No 490
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.12 E-value=27 Score=36.26 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=52.4
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEec---cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRG---FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
.|..+..++.|..++..+.+|.+..+=. -....++..........++...+ +.. ....-.+..+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~------------~ft-ss~~ltl~Qa 171 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER------------FFT-SSTSLTLKQA 171 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce------------eec-cCCceeeeec
Confidence 4667778888888888888885544321 11111111111122222211111 000 1112235677
Q ss_pred EEecCC---CEEEEEecCCeEEEEecCCCceecc
Q 040987 360 IFSSDG---AYLYSGGKEGVLVVWQLDTGKKKFL 390 (762)
Q Consensus 360 ~~s~~g---~~l~s~~~dg~i~~wd~~~~~~~~~ 390 (762)
+|+|+. ..|..-..|..|++||+......++
T Consensus 172 ~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 172 AWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred cccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence 898865 5677778899999999988776543
No 491
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.97 E-value=6.5 Score=24.43 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=21.8
Q ss_pred eecCCccceeEEEEeCCCCcccceeeeEEeeecC--CeEEEE
Q 040987 109 SLEGHKAPVTTVIVVPASTPATKILSYCWTASLD--GTIKYW 148 (762)
Q Consensus 109 ~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d--~~i~vW 148 (762)
.+....+.-....|||||+ .+++++..+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk------~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGK------YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSS------EEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCC------EEEEEecCCCCCCcCEE
Confidence 3444556778899999996 455666666 666665
No 492
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.97 E-value=45 Score=36.64 Aligned_cols=268 Identities=10% Similarity=0.061 Sum_probs=126.4
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
|-..++.+.|.-++--++..-.|.+ .........-...+.|...+||.|.+.++....+..|.+++-. ..++..
T Consensus 75 hf~~~~~~~f~~~~gDii~~~~dp~-----p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~-fd~ise 148 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDIIHLVNDPT-----PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKY-FDPISE 148 (1243)
T ss_pred hhhhhheeeEEecCCcEEEEEcCCC-----cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecc-ccccch
Confidence 5556666777665544444444432 0111112334456789999999999988888788888887643 122211
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
..-..... .. . +.-..+-|......+- +..-..++-|. .....+... .. .+....-.-+.|-.|..
T Consensus 149 ~~L~~~dl--~e-f-~khi~VgWgkketqfr--gk~~raqlrdp---tmp~~vD~G--~l---~avd~~k~~i~wrgD~~ 214 (1243)
T COG5290 149 YHLKKSDL--VE-F-GKHIRVGWGKKETQFR--GKGARAQLRDP---TMPYMVDYG--DL---FAVDTNKKIIFWRGDTE 214 (1243)
T ss_pred hhcchhHH--HH-h-ccceEeeecccchhcc--ccchhhhccCC---CCccccccc--ce---eEeeCCceEEEEccCcc
Confidence 11000000 00 0 0111222221111100 00000111111 111111000 00 00011123456667777
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC-----cEEEEEccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG-----DFKVWICND 586 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg-----~i~iwd~~~ 586 (762)
+.+++.... +....+++|..+..-.... .+. .+.-..+.|-|.|..+++-..|| .|.++.-+.
T Consensus 215 y~~v~r~Ee-----~prra~rvysreg~lds~s------ep~-~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG 282 (1243)
T COG5290 215 YNLVGRSEE-----RPRRAFRVYSREGQLDSAS------EPV-TGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG 282 (1243)
T ss_pred eeeecchhc-----ccccceeeecccccccccc------CCc-ccchhccccccCCceeeeeccCCCCCcceEEEEccCC
Confidence 777775210 1234677776542211100 122 33445689999999999987665 355554432
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCC
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~d 660 (762)
-+ ...+. ...+....+..++|.-....+|++..+.+.+|-..+-..-....-.-..+.-+.|+|.
T Consensus 283 Lr-HGef~--------lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 283 LR-HGEFD--------LRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred cc-cCCcc--------ccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence 11 11110 0011234455677766666777777889999988775433222222334667889984
No 493
>PLN02153 epithiospecifier protein
Probab=81.82 E-value=63 Score=32.80 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCEEEEEecC-----------CeEEEEecCCCceeccCCCCC----Ce-EEEEeCCCCCeEEEEec-------------
Q 040987 364 DGAYLYSGGKE-----------GVLVVWQLDTGKKKFLPRIGS----PL-LYFTESPDPSLSSISCA------------- 414 (762)
Q Consensus 364 ~g~~l~s~~~d-----------g~i~~wd~~~~~~~~~~~~~~----~v-~~~~~s~~~~~l~~~~~------------- 414 (762)
+++..+.|+.+ ..+.+||.++.+...+..... .. .+++ .-+++.++.++.
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~ 215 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYE 215 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCcccee
Confidence 55666666643 257889998877755433221 11 1122 235566555542
Q ss_pred CCcEEEEEcCCceE
Q 040987 415 DNQVHLLKMPSMEI 428 (762)
Q Consensus 415 d~~i~i~d~~~~~~ 428 (762)
.+.+.+||..+.+-
T Consensus 216 ~~~v~~yd~~~~~W 229 (341)
T PLN02153 216 SNAVQFFDPASGKW 229 (341)
T ss_pred cCceEEEEcCCCcE
Confidence 24588888876543
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=81.47 E-value=2.9 Score=32.06 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=35.9
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEE
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLI 260 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~i 260 (762)
..+..+|.+..||..+++.. .+...-.-.+.+++++|+.+|+.+....-+|
T Consensus 31 le~~~~GRll~ydp~t~~~~--vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri 81 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETT--VLLDGLYFPNGVALSPDESFVLVAETGRYRI 81 (89)
T ss_dssp HHT---EEEEEEETTTTEEE--EEEEEESSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ecCCCCcCEEEEECCCCeEE--EehhCCCccCeEEEcCCCCEEEEEeccCceE
Confidence 34678899999999999875 4444456789999999999998886544443
No 495
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=81.03 E-value=54 Score=31.52 Aligned_cols=275 Identities=8% Similarity=0.016 Sum_probs=138.3
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
.+-+..+.++.+ +...+..+.-+++.|+.+...-. ++..+.- .+--++
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~---------------------------~~~~lnt-~gyayg-- 133 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPT---------------------------LIGFLNT-DGYAYG-- 133 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcc---------------------------eeccccC-CceEEE--
Confidence 445667777644 56666677779999986653211 1111111 122223
Q ss_pred EecCCCEEEEEecCCeEEEEecCCCceecc----CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce---EEEEEc
Q 040987 361 FSSDGAYLYSGGKEGVLVVWQLDTGKKKFL----PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME---IIRSIS 433 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~ 433 (762)
|.-.|++.+.+..|.-+.+.|+.+...-.+ .........++.| |++-+.+..++.+.+.|+.... .+....
T Consensus 134 v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n 211 (370)
T COG5276 134 VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN 211 (370)
T ss_pred EEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe
Confidence 334688888888666677888876554221 1112223445554 5677777789999999987632 222222
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
. ...+.++..+++-.+++.. ..| +.+-|..+.+....+..... ...+..-.+.-.+++.
T Consensus 212 ~-----------g~g~~sv~vsdnr~y~vvy-~eg-vlivd~s~~ssp~~~gsyet--------~~p~~~s~v~Vs~~~~ 270 (370)
T COG5276 212 T-----------GPGTYSVSVSDNRAYLVVY-DEG-VLIVDVSGPSSPTVFGSYET--------SNPVSISTVPVSGEYA 270 (370)
T ss_pred c-----------CCceEEEEecCCeeEEEEc-ccc-eEEEecCCCCCceEeecccc--------CCcccccceeccccee
Confidence 1 1256777777765555543 333 77778777665544433221 1112211333345555
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
.... .+.-+.+-|.......+........+- .-..+..+ +.++..+..+ +..+-+....+.....
T Consensus 271 Yvad---------ga~gl~~idisnp~spfl~ss~~t~g~---~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~ 335 (370)
T COG5276 271 YVAD---------GAKGLPIIDISNPPSPFLSSSLDTAGY---QAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKR 335 (370)
T ss_pred eeec---------cccCceeEeccCCCCCchhccccCCCc---cccceEEe--cCeeEeccCC-ceEEEeCCChhhcccc
Confidence 5554 445566666665443332222111111 11222222 3344333333 3444444433322222
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
+ +...-+.+.+.+-+.+.+.+.. ++.+.||+.
T Consensus 336 ~-----------g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 336 P-----------GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred c-----------CcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1 1122233444444556555555 777888875
No 496
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.65 E-value=0.29 Score=49.30 Aligned_cols=142 Identities=11% Similarity=0.142 Sum_probs=97.3
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE-EeCCCcE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS-SSYGGDF 579 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~-~~~dg~i 579 (762)
.-...|-|.+.-++.++ -+..+..||-...... .. .+++....++|.-++..++. +-..+.+
T Consensus 37 pi~~~w~~e~~nlavac---------a~tiv~~YD~agq~~l-e~-------n~tg~aldm~wDkegdvlavlAek~~pi 99 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVAC---------ANTIVIYYDKAGQVIL-EL-------NPTGKALDMAWDKEGDVLAVLAEKTGPI 99 (615)
T ss_pred cceeeEecCCCceehhh---------hhhHHHhhhhhcceec-cc-------CCchhHhhhhhccccchhhhhhhcCCCe
Confidence 34456778777777776 5667778886544221 11 11455667888887776544 4556889
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
.+||+.+........ +....-.-+.|++.+..++.+. .|.+.|++..+.+.+.....|..++.++++.
T Consensus 100 ylwd~n~eytqqLE~-----------gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 100 YLWDVNSEYTQQLES-----------GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred eechhhhhhHHHHhc-----------cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 999998765443321 1111122278999999999998 8999999999888777776599999999999
Q ss_pred CCCCEEEEEEcCC
Q 040987 659 GSSEYLVATSWGS 671 (762)
Q Consensus 659 ~dg~~l~s~~~d~ 671 (762)
+.+ +.+.++.|.
T Consensus 169 lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 169 LED-YVILCDCDN 180 (615)
T ss_pred ccc-eeeecCcHH
Confidence 975 455555554
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.63 E-value=20 Score=37.73 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.2
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
..|..++..+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999964
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.62 E-value=1.2e+02 Score=35.05 Aligned_cols=188 Identities=9% Similarity=0.100 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC--eEEEEeee-ccccC-CCceeEEEEEEecCCCceeE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS--LMSTVDIK-LAEEG-IGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~~-~~~~~-~~~d~~i~iwd~~~~~~~~~ 544 (762)
.|+++|..+++.+..+....... ...+..+.|+.... +++++... ...+. .-.++.++.|+.-.......
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~------a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~le 927 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEA------AFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLE 927 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcc------hhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceee
Confidence 48888888877666554432211 44567777766444 33443321 11110 01445677777654433222
Q ss_pred EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEE
Q 040987 545 LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLA 624 (762)
Q Consensus 545 ~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la 624 (762)
+-.. ..- .+.+ .+..|-..++.+| ....+++||+...+..+..+ ...-...|+.+.+ .+..++
T Consensus 928 llh~--T~~-~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e---------~k~~p~~Is~iqt--~~~RI~ 990 (1205)
T KOG1898|consen 928 LLHK--TEI-PGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCE---------LKFIPNRISSIQT--YGARIV 990 (1205)
T ss_pred eeec--cCC-Cccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhh---------hccCceEEEEEee--cceEEE
Confidence 2110 111 2233 4566766655544 35689999998887766543 1112455666665 566788
Q ss_pred EEc--CC-eEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 625 VAA--ET-VITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 625 ~~~--d~-~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+|. ++ ....|+-+..+++....... ..|+.+.+-.. ..+|.+..-|. +.+-.+..
T Consensus 991 VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~-~tvagaDrfGN--i~~vR~P~ 1049 (1205)
T KOG1898|consen 991 VGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDY-DTVAGADRFGN--IAVVRIPP 1049 (1205)
T ss_pred EeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecC-CceeeccccCc--EEEEECCC
Confidence 886 33 34556666666654443221 22555555443 34665644443 66665543
No 499
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=79.47 E-value=90 Score=33.15 Aligned_cols=324 Identities=14% Similarity=0.076 Sum_probs=147.3
Q ss_pred cCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec-cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 234 EMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH-HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
....|.++.+.-.|.+-++..+| +..||..+++.. +.... ....|..+..+-.|+ |.+|+.+| |.+.+.++
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkal-----ql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKAL-----QLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccceEE-----EcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhh
Confidence 35678888888888777665554 566676666543 22222 225566666665665 56676666 77777655
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccC
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLP 391 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~ 391 (762)
.+..... ..-....|..+.-..+| .+-.|+..|..+ ......... ...
T Consensus 235 ~~~sn~~-----------------------------~~lp~~~I~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~ 283 (671)
T COG3292 235 WRASNWG-----------------------------PMLPSGNILLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLS 283 (671)
T ss_pred ccccccC-----------------------------CCCcchheeeeecccCC-CEEEeeccccee-EecCCCCcccccc
Confidence 2211000 00011223333222333 233344433322 222222221 111
Q ss_pred CC---CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC--CCCEEEEeec
Q 040987 392 RI---GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH--DGGLVALRAE 466 (762)
Q Consensus 392 ~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~ 466 (762)
.. -+.+.++....+|.+ -+++.++.+++-+.+ ......+..... ..+...+.+| .+..+-....
T Consensus 284 ~~~l~~S~vnsL~~D~dGsL-Wv~t~~giv~~~~a~-w~~ma~in~~dG---------~v~~~~~~a~~ll~~~v~~~ns 352 (671)
T COG3292 284 KMHLGVSTVNSLWLDTDGSL-WVGTYGGIVRYLTAD-WKRMAVINDSDG---------GVSQYEAVAPALLSWGVRQLNS 352 (671)
T ss_pred ccCCccccccceeeccCCCE-eeeccCceEEEecch-hhheeeeecCCC---------chhhhhccCchhcccceeeccc
Confidence 11 234555555556654 334455544443322 111111211110 1111122222 2222222333
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
.|.+.+-+-.++..+.... ..+ ...|+.+.+..+|+.-+ ++ ...-+..|+..+........
T Consensus 353 ~g~L~van~stG~~v~sv~-q~R--------g~nit~~~~d~~g~lWl-gs---------~q~GLsrl~n~n~~avlde~ 413 (671)
T COG3292 353 IGELMVANGSTGELVRSVH-QLR--------GMNITTTLEDSRGRLWL-GS---------MQNGLSRLDNKNEWAVLDED 413 (671)
T ss_pred cceEEEecCCCCcEEEEee-ecc--------ccccchhhhccCCcEEE-Ee---------cccchhhhccCCcccccccc
Confidence 3445555555555444421 111 33466666666554333 33 22235555555521211111
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
.+-....|..+.=.|+++ |..|+.+|.++. +.+.++....+. ... .......+..+.+.|+|++-+..
T Consensus 414 ----agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln---~~~---~~l~~s~~~~lg~~~~g~Lw~a~ 481 (671)
T COG3292 414 ----AGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLN---PGS---HGLDGSRVEQLGLGPDGRLWLAA 481 (671)
T ss_pred ----cCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhcccc---ccc---CcCCcchhhhhccCCCCceEEEe
Confidence 222256788888889988 677887875543 333333332221 000 01123457788899999864433
Q ss_pred cCCeEEEEeCCCC
Q 040987 627 AETVITLWDPDRN 639 (762)
Q Consensus 627 ~d~~i~iwd~~~~ 639 (762)
++| |..|+.+..
T Consensus 482 g~g-va~~~sq~~ 493 (671)
T COG3292 482 GSG-VAAWESQRR 493 (671)
T ss_pred cce-eeeeccccc
Confidence 333 456665543
No 500
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.22 E-value=3.9 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 663 YLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 663 ~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
.++.++.++. +..+|.++|+.+|.+
T Consensus 8 ~v~~~~~~g~--l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGT--LYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCE--EEEEEcccCcEEEEc
Confidence 5777888887 999999999999975
Done!