Query 040987
Match_columns 762
No_of_seqs 855 out of 4775
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 03:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 9E-67 3.1E-71 577.4 68.6 534 34-679 21-577 (577)
2 1nr0_A Actin interacting prote 100.0 1.1E-64 3.8E-69 560.5 64.3 531 37-681 26-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 3.2E-64 1.1E-68 556.9 65.3 518 63-694 7-550 (577)
4 1nr0_A Actin interacting prote 100.0 7E-62 2.4E-66 538.1 64.4 506 70-684 16-569 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-60 4.3E-65 575.7 54.0 537 32-692 618-1217(1249)
6 1pgu_A Actin interacting prote 100.0 1.1E-57 3.8E-62 509.2 54.7 506 37-682 26-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-57 3.8E-62 550.0 54.0 552 43-681 669-1248(1249)
8 1pgu_A Actin interacting prote 100.0 1.4E-55 4.7E-60 492.2 55.1 486 69-692 15-583 (615)
9 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-55 7.3E-60 502.7 56.5 579 32-694 20-795 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-55 1.1E-59 501.4 55.0 544 66-689 11-739 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-49 9.4E-54 456.2 44.8 462 64-668 5-487 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-44 9.6E-49 414.4 53.9 512 34-683 18-602 (814)
13 3ow8_A WD repeat-containing pr 100.0 3.2E-42 1.1E-46 347.9 39.5 289 345-681 24-320 (321)
14 1got_B GT-beta; complex (GTP-b 100.0 2.2E-42 7.6E-47 353.1 38.7 291 63-474 46-340 (340)
15 1vyh_C Platelet-activating fac 100.0 2E-42 6.9E-47 362.6 36.5 294 58-476 94-410 (410)
16 3ow8_A WD repeat-containing pr 100.0 1.1E-41 3.7E-46 344.0 39.5 285 67-476 27-320 (321)
17 1vyh_C Platelet-activating fac 100.0 8.7E-42 3E-46 357.8 37.6 288 346-681 101-410 (410)
18 1got_B GT-beta; complex (GTP-b 100.0 5.3E-41 1.8E-45 342.9 40.4 289 344-679 46-340 (340)
19 4g56_B MGC81050 protein; prote 100.0 2E-41 6.7E-46 347.7 35.6 320 239-639 9-344 (357)
20 2ynn_A Coatomer subunit beta'; 100.0 1.8E-40 6E-45 333.1 40.9 290 64-477 5-302 (304)
21 1r5m_A SIR4-interacting protei 100.0 9.7E-41 3.3E-45 353.9 40.0 360 257-681 26-424 (425)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-40 8.5E-45 338.4 41.5 314 344-689 6-342 (345)
23 2ynn_A Coatomer subunit beta'; 100.0 2E-40 6.7E-45 332.8 38.7 292 345-683 5-303 (304)
24 2pbi_B Guanine nucleotide-bind 100.0 2.4E-40 8.3E-45 339.4 37.3 293 63-474 55-354 (354)
25 4g56_B MGC81050 protein; prote 100.0 2.7E-41 9.2E-46 346.7 30.1 324 78-541 10-346 (357)
26 2pbi_B Guanine nucleotide-bind 100.0 5.8E-40 2E-44 336.6 38.6 290 344-679 55-354 (354)
27 4gqb_B Methylosome protein 50; 100.0 3.2E-40 1.1E-44 335.4 33.7 300 56-479 17-333 (344)
28 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.3E-39 1.5E-43 329.3 40.8 312 103-544 4-341 (345)
29 3iz6_a 40S ribosomal protein R 100.0 3.1E-40 1.1E-44 342.6 32.3 316 56-479 49-377 (380)
30 3frx_A Guanine nucleotide-bind 100.0 3E-39 1E-43 326.4 38.5 289 345-683 9-318 (319)
31 1gxr_A ESG1, transducin-like e 100.0 2.8E-39 9.5E-44 331.0 38.6 319 280-680 8-335 (337)
32 3frx_A Guanine nucleotide-bind 100.0 5.9E-39 2E-43 324.3 39.6 297 229-587 11-318 (319)
33 4gqb_B Methylosome protein 50; 100.0 5.4E-39 1.8E-43 326.4 38.7 309 258-641 16-334 (344)
34 1erj_A Transcriptional repress 100.0 9E-39 3.1E-43 333.3 41.1 299 351-683 62-390 (393)
35 1r5m_A SIR4-interacting protei 100.0 1.9E-39 6.5E-44 344.0 36.5 338 53-476 25-424 (425)
36 3iz6_a 40S ribosomal protein R 100.0 4.7E-40 1.6E-44 341.3 31.0 308 342-685 55-378 (380)
37 1k32_A Tricorn protease; prote 100.0 5.1E-38 1.8E-42 368.9 52.0 541 45-684 26-639 (1045)
38 1gxr_A ESG1, transducin-like e 100.0 3.7E-39 1.3E-43 330.1 36.9 321 234-636 8-335 (337)
39 2xzm_R RACK1; ribosome, transl 100.0 5.1E-39 1.7E-43 328.8 37.3 292 345-684 13-342 (343)
40 2hes_X YDR267CP; beta-propelle 100.0 2.7E-38 9.2E-43 321.2 40.3 302 344-682 5-328 (330)
41 2xzm_R RACK1; ribosome, transl 100.0 4E-38 1.4E-42 322.2 40.8 251 275-588 70-342 (343)
42 4ery_A WD repeat-containing pr 100.0 4.9E-38 1.7E-42 317.5 40.0 289 64-476 15-311 (312)
43 4ery_A WD repeat-containing pr 100.0 7.6E-38 2.6E-42 316.1 40.9 291 344-681 14-311 (312)
44 2pm9_A Protein WEB1, protein t 100.0 3.9E-40 1.3E-44 348.2 24.7 336 281-683 12-415 (416)
45 1erj_A Transcriptional repress 100.0 7E-38 2.4E-42 326.6 41.0 313 215-586 41-389 (393)
46 2pm9_A Protein WEB1, protein t 100.0 1.4E-39 4.8E-44 343.9 28.4 346 236-639 13-415 (416)
47 3vl1_A 26S proteasome regulato 100.0 6.5E-38 2.2E-42 331.5 40.2 349 75-586 59-419 (420)
48 3vl1_A 26S proteasome regulato 100.0 9.8E-39 3.4E-43 337.8 33.5 345 237-682 58-419 (420)
49 2hes_X YDR267CP; beta-propelle 100.0 1.5E-37 5.3E-42 315.6 38.5 297 65-477 7-328 (330)
50 2j04_B YDR362CP, TAU91; beta p 100.0 3.7E-39 1.3E-43 343.8 25.8 355 231-683 129-518 (524)
51 4aow_A Guanine nucleotide-bind 100.0 5.4E-37 1.9E-41 314.4 40.2 292 345-684 30-339 (340)
52 3zwl_B Eukaryotic translation 100.0 9.3E-37 3.2E-41 316.6 41.2 298 63-480 23-349 (369)
53 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-38 8E-43 337.6 26.6 356 68-586 129-517 (524)
54 4aow_A Guanine nucleotide-bind 100.0 5E-36 1.7E-40 307.3 40.0 299 228-588 31-339 (340)
55 3zwl_B Eukaryotic translation 100.0 2.8E-36 9.5E-41 313.0 38.6 304 345-688 24-352 (369)
56 3dm0_A Maltose-binding peripla 100.0 2.8E-36 9.4E-41 339.4 38.6 298 66-476 376-692 (694)
57 3dm0_A Maltose-binding peripla 100.0 7E-36 2.4E-40 336.1 40.1 291 346-682 375-693 (694)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-35 5.7E-40 315.0 40.2 323 64-478 110-443 (445)
59 3v7d_B Cell division control p 100.0 2.6E-35 8.9E-40 315.7 40.8 313 275-672 115-455 (464)
60 1k8k_C P40, ARP2/3 complex 41 100.0 8E-36 2.8E-40 309.9 34.0 294 348-685 3-364 (372)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.6E-35 2.6E-39 309.9 41.9 323 275-683 112-443 (445)
62 3v7d_B Cell division control p 100.0 2.5E-35 8.5E-40 315.9 38.4 321 64-473 113-459 (464)
63 3i2n_A WD repeat-containing pr 100.0 1.1E-35 3.7E-40 307.0 33.7 299 347-685 12-356 (357)
64 1sq9_A Antiviral protein SKI8; 100.0 8.3E-36 2.8E-40 312.8 33.0 315 346-684 9-397 (397)
65 3gre_A Serine/threonine-protei 100.0 2.2E-36 7.4E-41 321.4 28.8 353 242-679 34-437 (437)
66 1k32_A Tricorn protease; prote 100.0 3.4E-34 1.2E-38 336.5 49.9 487 71-687 13-605 (1045)
67 3i2n_A WD repeat-containing pr 100.0 2.4E-35 8.2E-40 304.4 34.9 314 272-641 9-356 (357)
68 3ei3_B DNA damage-binding prot 100.0 3.7E-35 1.3E-39 305.9 36.4 299 274-638 66-382 (383)
69 3ei3_B DNA damage-binding prot 100.0 3.2E-35 1.1E-39 306.4 35.9 304 343-682 63-382 (383)
70 4h5i_A Guanine nucleotide-exch 100.0 3.1E-35 1.1E-39 302.4 33.9 300 280-638 13-343 (365)
71 4a11_B DNA excision repair pro 100.0 1.6E-35 5.6E-40 311.9 32.4 323 52-484 22-372 (408)
72 4h5i_A Guanine nucleotide-exch 100.0 2.5E-35 8.7E-40 303.0 32.8 292 73-478 15-344 (365)
73 3gre_A Serine/threonine-protei 100.0 7.7E-36 2.6E-40 317.1 29.8 340 57-535 47-437 (437)
74 4a11_B DNA excision repair pro 100.0 9.6E-36 3.3E-40 313.6 30.0 370 255-682 22-405 (408)
75 1k8k_C P40, ARP2/3 complex 41 100.0 9.9E-35 3.4E-39 301.7 36.5 298 231-590 4-365 (372)
76 3k26_A Polycomb protein EED; W 100.0 1.6E-35 5.5E-40 306.9 30.4 328 275-682 12-366 (366)
77 4gga_A P55CDC, cell division c 100.0 1.8E-34 6.2E-39 304.0 38.6 286 75-483 108-401 (420)
78 1sq9_A Antiviral protein SKI8; 100.0 7.1E-35 2.4E-39 305.7 35.2 316 273-640 8-397 (397)
79 2j04_A TAU60, YPL007P, hypothe 100.0 5.5E-37 1.9E-41 316.1 18.0 322 234-669 14-350 (588)
80 4e54_B DNA damage-binding prot 100.0 2.2E-35 7.5E-40 312.4 30.8 304 344-686 110-434 (435)
81 4e54_B DNA damage-binding prot 100.0 7.3E-36 2.5E-40 316.1 26.8 303 275-642 113-434 (435)
82 4ggc_A P55CDC, cell division c 100.0 5.3E-34 1.8E-38 289.1 38.4 281 75-478 28-316 (318)
83 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-34 9.8E-39 290.3 36.2 291 344-692 9-306 (313)
84 2j04_A TAU60, YPL007P, hypothe 100.0 2.1E-36 7.1E-41 311.9 20.4 315 111-627 12-349 (588)
85 2pm7_B Protein transport prote 100.0 1E-34 3.5E-39 290.1 31.0 253 66-425 3-285 (297)
86 3odt_A Protein DOA1; ubiquitin 100.0 7.2E-34 2.5E-38 287.4 37.2 297 100-544 3-302 (313)
87 3dwl_C Actin-related protein 2 100.0 3.1E-35 1.1E-39 306.0 26.5 339 276-680 6-377 (377)
88 3dwl_C Actin-related protein 2 100.0 1.7E-35 5.8E-40 307.9 24.3 315 68-475 7-377 (377)
89 3k26_A Polycomb protein EED; W 100.0 1.3E-34 4.5E-39 300.0 30.6 308 230-585 13-365 (366)
90 4aez_A CDC20, WD repeat-contai 100.0 9E-34 3.1E-38 296.9 36.9 291 68-484 87-387 (401)
91 4aez_A CDC20, WD repeat-contai 100.0 6.1E-34 2.1E-38 298.1 35.1 288 350-690 88-388 (401)
92 3bg1_A Protein SEC13 homolog; 100.0 1E-34 3.5E-39 292.8 26.7 253 66-425 7-293 (316)
93 2pm7_B Protein transport prote 100.0 4.4E-33 1.5E-37 278.2 35.0 257 275-585 3-284 (297)
94 3dw8_B Serine/threonine-protei 100.0 2.2E-33 7.5E-38 299.4 34.8 337 69-476 25-445 (447)
95 4gga_A P55CDC, cell division c 100.0 9.6E-33 3.3E-37 290.8 37.3 288 355-690 107-403 (420)
96 1yfq_A Cell cycle arrest prote 100.0 3.8E-33 1.3E-37 286.0 30.7 280 348-672 6-315 (342)
97 4ggc_A P55CDC, cell division c 100.0 4.5E-32 1.5E-36 274.9 36.6 281 356-684 28-317 (318)
98 3dw8_B Serine/threonine-protei 100.0 8.7E-33 3E-37 294.8 32.6 320 279-637 26-445 (447)
99 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-32 1.3E-36 279.6 36.1 309 347-691 5-346 (351)
100 3jrp_A Fusion protein of prote 100.0 7.2E-33 2.5E-37 288.4 30.5 257 65-428 4-290 (379)
101 1yfq_A Cell cycle arrest prote 100.0 2.2E-32 7.5E-37 280.3 33.6 285 275-635 5-321 (342)
102 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-32 8.1E-37 289.5 34.2 278 69-482 130-419 (435)
103 3mmy_A MRNA export factor; mRN 100.0 5.6E-32 1.9E-36 280.4 35.1 298 344-682 30-346 (368)
104 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-32 1E-36 280.3 32.7 312 65-485 4-345 (351)
105 3jrp_A Fusion protein of prote 100.0 2.5E-32 8.6E-37 284.3 32.5 260 275-588 5-289 (379)
106 3mmy_A MRNA export factor; mRN 100.0 3.5E-32 1.2E-36 281.9 31.5 291 275-641 33-352 (368)
107 3bg1_A Protein SEC13 homolog; 100.0 4.6E-32 1.6E-36 273.3 29.0 255 274-585 6-292 (316)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.4E-31 2.2E-35 279.7 38.1 287 72-478 4-392 (450)
109 1l0q_A Surface layer protein; 100.0 3.5E-30 1.2E-34 269.2 41.6 341 43-517 2-366 (391)
110 1p22_A F-BOX/WD-repeat protein 100.0 4.2E-31 1.4E-35 279.9 33.5 279 350-687 130-419 (435)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 4E-31 1.4E-35 277.1 31.4 292 283-641 36-345 (402)
112 3vu4_A KMHSV2; beta-propeller 100.0 5.3E-31 1.8E-35 270.1 31.5 290 58-425 4-336 (355)
113 1l0q_A Surface layer protein; 100.0 7.4E-30 2.5E-34 266.7 39.7 310 294-685 3-345 (391)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-30 3.7E-35 273.8 31.7 298 237-589 36-345 (402)
115 3bws_A Protein LP49; two-domai 100.0 3.9E-29 1.3E-33 265.2 43.2 301 49-477 95-432 (433)
116 3bws_A Protein LP49; two-domai 100.0 1.6E-29 5.5E-34 268.1 39.9 285 354-682 123-432 (433)
117 3jro_A Fusion protein of prote 100.0 9.1E-32 3.1E-36 303.8 23.3 255 66-427 3-287 (753)
118 3lrv_A PRE-mRNA-splicing facto 100.0 3.8E-30 1.3E-34 263.0 29.6 276 79-476 42-332 (343)
119 3vu4_A KMHSV2; beta-propeller 100.0 8.7E-30 3E-34 261.0 32.0 290 344-685 10-339 (355)
120 3jro_A Fusion protein of prote 100.0 1.1E-30 3.9E-35 294.9 27.0 261 275-589 3-288 (753)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-29 1E-33 266.8 36.0 295 354-682 5-391 (450)
122 1nir_A Nitrite reductase; hemo 100.0 3.5E-29 1.2E-33 269.4 35.0 347 288-691 144-523 (543)
123 4gq1_A NUP37; propeller, trans 100.0 4.2E-30 1.4E-34 267.4 25.2 277 351-682 87-389 (393)
124 3lrv_A PRE-mRNA-splicing facto 100.0 7E-29 2.4E-33 253.6 31.4 265 42-424 47-332 (343)
125 2xyi_A Probable histone-bindin 100.0 7.1E-29 2.4E-33 261.9 32.2 257 66-425 122-410 (430)
126 2w18_A PALB2, fancn, partner a 100.0 2E-28 6.8E-33 236.7 31.1 287 250-680 57-355 (356)
127 1nir_A Nitrite reductase; hemo 100.0 1.1E-27 3.9E-32 257.7 39.9 336 79-546 143-522 (543)
128 2xyi_A Probable histone-bindin 100.0 7.4E-29 2.5E-33 261.7 30.1 251 389-683 123-411 (430)
129 2w18_A PALB2, fancn, partner a 100.0 1.2E-28 4E-33 238.3 27.0 268 87-475 56-355 (356)
130 2ecf_A Dipeptidyl peptidase IV 100.0 5.6E-27 1.9E-31 266.6 37.3 365 281-684 36-461 (741)
131 4gq1_A NUP37; propeller, trans 100.0 3.1E-28 1.1E-32 253.3 24.7 257 232-538 86-389 (393)
132 2hqs_A Protein TOLB; TOLB, PAL 100.0 9.3E-27 3.2E-31 243.4 35.3 286 43-459 75-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 100.0 6.5E-27 2.2E-31 266.0 33.0 325 72-539 36-460 (741)
134 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.5E-27 2.6E-31 244.1 30.7 240 256-568 159-410 (415)
135 1xfd_A DIP, dipeptidyl aminope 100.0 5.8E-27 2E-31 265.8 28.3 350 74-575 18-429 (723)
136 2z3z_A Dipeptidyl aminopeptida 99.9 2.3E-25 7.7E-30 251.7 34.4 319 75-540 28-437 (706)
137 2z3z_A Dipeptidyl aminopeptida 99.9 3.7E-25 1.3E-29 250.0 36.1 354 284-684 28-437 (706)
138 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-25 6.4E-30 253.4 31.2 352 282-690 17-451 (723)
139 3u4y_A Uncharacterized protein 99.9 4.1E-24 1.4E-28 217.5 34.4 281 360-685 4-307 (331)
140 3u4y_A Uncharacterized protein 99.9 4.4E-23 1.5E-27 209.8 33.6 288 288-641 4-307 (331)
141 1ri6_A Putative isomerase YBHE 99.9 8.7E-23 3E-27 208.9 35.9 304 294-662 5-335 (343)
142 1pby_B Quinohemoprotein amine 99.9 2.2E-23 7.6E-28 212.7 30.4 274 44-436 2-321 (337)
143 1z68_A Fibroblast activation p 99.9 3.4E-24 1.2E-28 242.6 26.2 334 78-545 20-450 (719)
144 1ri6_A Putative isomerase YBHE 99.9 1.4E-22 4.7E-27 207.4 34.0 283 368-687 8-315 (343)
145 3vgz_A Uncharacterized protein 99.9 5.9E-23 2E-27 211.1 31.1 284 352-671 39-335 (353)
146 3vgz_A Uncharacterized protein 99.9 1.2E-22 4E-27 208.8 32.4 283 72-468 40-335 (353)
147 1pby_B Quinohemoprotein amine 99.9 1.2E-23 4.1E-28 214.7 24.5 280 366-693 2-321 (337)
148 2ojh_A Uncharacterized protein 99.9 3.6E-23 1.2E-27 206.8 26.8 253 49-416 18-293 (297)
149 1z68_A Fibroblast activation p 99.9 2.2E-23 7.4E-28 235.9 27.6 350 286-690 20-451 (719)
150 2ojh_A Uncharacterized protein 99.9 7E-23 2.4E-27 204.7 26.7 254 208-518 16-291 (297)
151 4a5s_A Dipeptidyl peptidase 4 99.9 1.1E-21 3.6E-26 221.7 38.2 389 115-646 17-457 (740)
152 4a5s_A Dipeptidyl peptidase 4 99.9 9.6E-22 3.3E-26 222.1 37.1 376 236-690 17-457 (740)
153 3hfq_A Uncharacterized protein 99.9 3.1E-21 1.1E-25 197.4 33.6 288 374-687 15-324 (347)
154 3hfq_A Uncharacterized protein 99.9 1E-20 3.4E-25 193.7 36.7 268 351-642 37-323 (347)
155 1jmx_B Amine dehydrogenase; ox 99.9 1.3E-21 4.3E-26 200.7 28.2 287 358-692 4-335 (349)
156 3o4h_A Acylamino-acid-releasin 99.9 6.6E-22 2.3E-26 217.6 27.8 275 352-682 20-315 (582)
157 3o4h_A Acylamino-acid-releasin 99.9 1.1E-21 3.8E-26 215.8 24.9 268 280-638 20-315 (582)
158 1jmx_B Amine dehydrogenase; ox 99.9 4.2E-20 1.4E-24 189.4 34.0 311 79-486 5-334 (349)
159 3scy_A Hypothetical bacterial 99.9 1.3E-19 4.3E-24 186.6 36.9 280 352-658 48-360 (361)
160 3scy_A Hypothetical bacterial 99.9 1.3E-19 4.6E-24 186.4 36.7 292 366-687 14-344 (361)
161 3pe7_A Oligogalacturonate lyas 99.9 8.4E-21 2.9E-25 197.7 26.1 296 346-681 23-383 (388)
162 3pe7_A Oligogalacturonate lyas 99.9 1.3E-20 4.5E-25 196.2 26.4 301 59-475 16-380 (388)
163 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.5E-19 8.5E-24 184.2 31.5 284 367-683 4-342 (365)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 6E-19 2E-23 181.4 29.7 274 53-426 14-342 (365)
165 2oiz_A Aromatic amine dehydrog 99.8 1.3E-18 4.6E-23 177.5 31.1 300 83-511 13-360 (361)
166 2oit_A Nucleoporin 214KDA; NH2 99.8 2.4E-18 8E-23 180.1 32.8 261 235-518 36-321 (434)
167 3c5m_A Oligogalacturonate lyas 99.8 2E-19 6.8E-24 187.9 23.0 288 355-686 37-388 (396)
168 3c5m_A Oligogalacturonate lyas 99.8 6.7E-19 2.3E-23 183.9 26.9 321 58-479 15-386 (396)
169 2oiz_A Aromatic amine dehydrog 99.8 4.2E-18 1.4E-22 173.8 30.1 299 292-662 14-360 (361)
170 1qks_A Cytochrome CD1 nitrite 99.8 4.7E-17 1.6E-21 174.1 38.6 346 291-690 165-546 (567)
171 2oit_A Nucleoporin 214KDA; NH2 99.8 4.3E-18 1.5E-22 178.1 26.1 271 282-585 37-332 (434)
172 3azo_A Aminopeptidase; POP fam 99.8 7.8E-18 2.7E-22 188.5 27.7 316 346-687 16-374 (662)
173 3azo_A Aminopeptidase; POP fam 99.8 1.5E-17 5.2E-22 186.1 28.8 298 276-652 18-383 (662)
174 1qks_A Cytochrome CD1 nitrite 99.8 1.7E-15 5.7E-20 162.2 42.4 330 42-435 166-548 (567)
175 2gop_A Trilobed protease; beta 99.8 6.2E-16 2.1E-20 158.0 31.3 266 355-684 16-332 (347)
176 2dg1_A DRP35, lactonase; beta 99.7 6.7E-16 2.3E-20 156.7 27.1 282 355-671 7-301 (333)
177 2gop_A Trilobed protease; beta 99.7 1.6E-15 5.5E-20 154.9 30.0 275 282-651 15-342 (347)
178 2xdw_A Prolyl endopeptidase; a 99.7 2.5E-15 8.4E-20 168.9 33.8 286 363-684 81-416 (710)
179 2dg1_A DRP35, lactonase; beta 99.7 1.8E-15 6.3E-20 153.4 29.6 278 282-627 6-298 (333)
180 3fvz_A Peptidyl-glycine alpha- 99.7 1.5E-15 5.1E-20 153.3 27.8 257 394-682 23-322 (329)
181 1q7f_A NHL, brain tumor CG1071 99.7 6E-15 2.1E-19 145.9 30.8 248 394-684 29-282 (286)
182 3fvz_A Peptidyl-glycine alpha- 99.7 2.9E-15 9.9E-20 151.2 28.9 262 281-587 23-323 (329)
183 1q7f_A NHL, brain tumor CG1071 99.7 1.2E-14 4E-19 143.8 31.8 248 111-478 26-281 (286)
184 3dsm_A Uncharacterized protein 99.7 3E-15 1E-19 150.7 27.0 274 373-693 15-312 (328)
185 3e5z_A Putative gluconolactona 99.7 4.8E-15 1.6E-19 147.4 27.9 254 393-687 26-291 (296)
186 3sjl_D Methylamine dehydrogena 99.7 5.6E-15 1.9E-19 147.5 26.5 300 287-660 38-384 (386)
187 2xdw_A Prolyl endopeptidase; a 99.7 1.7E-14 5.9E-19 162.1 32.9 277 82-479 80-416 (710)
188 2z2n_A Virginiamycin B lyase; 99.7 2.3E-13 7.9E-18 135.5 36.5 283 351-685 12-298 (299)
189 2mad_H Methylamine dehydrogena 99.7 1.2E-13 4.3E-18 140.5 34.7 293 361-689 28-357 (373)
190 2bkl_A Prolyl endopeptidase; m 99.7 7.8E-15 2.7E-19 164.3 28.1 276 81-479 75-399 (695)
191 3dsm_A Uncharacterized protein 99.7 3.1E-14 1.1E-18 143.2 29.6 265 355-657 45-319 (328)
192 3sjl_D Methylamine dehydrogena 99.7 3.6E-14 1.2E-18 141.7 29.3 300 359-693 38-374 (386)
193 3e5z_A Putative gluconolactona 99.7 3E-14 1E-18 141.6 29.0 252 345-642 19-290 (296)
194 2bkl_A Prolyl endopeptidase; m 99.7 3.1E-15 1.1E-19 167.6 23.5 287 361-686 75-401 (695)
195 4a2l_A BT_4663, two-component 99.7 3E-11 1E-15 137.4 55.7 505 73-685 88-617 (795)
196 4a2l_A BT_4663, two-component 99.7 5.9E-11 2E-15 135.1 56.3 515 54-682 108-659 (795)
197 2z2n_A Virginiamycin B lyase; 99.6 2.1E-12 7.1E-17 128.5 38.8 283 280-640 13-297 (299)
198 2mad_H Methylamine dehydrogena 99.6 2.2E-12 7.4E-17 131.4 37.2 284 288-645 27-357 (373)
199 3no2_A Uncharacterized protein 99.6 1.6E-13 5.4E-18 133.6 27.3 242 405-693 4-263 (276)
200 3c75_H MADH, methylamine dehyd 99.6 2E-13 7E-18 139.0 27.6 291 363-689 82-409 (426)
201 1yr2_A Prolyl oligopeptidase; 99.6 1.3E-13 4.5E-18 155.5 28.2 285 362-685 115-444 (741)
202 1rwi_B Serine/threonine-protei 99.6 2.3E-13 7.8E-18 133.3 24.4 241 396-685 25-267 (270)
203 1rwi_B Serine/threonine-protei 99.6 4.1E-13 1.4E-17 131.4 25.2 241 283-589 25-267 (270)
204 3no2_A Uncharacterized protein 99.6 1.4E-12 4.6E-17 127.0 27.8 193 237-465 38-231 (276)
205 3c75_H MADH, methylamine dehyd 99.6 1.1E-12 3.7E-17 133.7 27.7 282 83-484 82-409 (426)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 5.6E-12 1.9E-16 126.4 31.8 248 350-638 14-299 (314)
207 2qc5_A Streptogramin B lactona 99.6 1.9E-11 6.5E-16 121.6 35.0 278 352-681 18-299 (300)
208 2qc5_A Streptogramin B lactona 99.5 3.1E-11 1E-15 120.1 36.0 278 70-476 17-299 (300)
209 1yr2_A Prolyl oligopeptidase; 99.5 1.2E-12 4E-17 147.7 26.5 245 237-540 164-443 (741)
210 3v9f_A Two-component system se 99.5 3.7E-09 1.3E-13 120.0 55.4 501 49-684 83-613 (781)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 9.6E-12 3.3E-16 124.7 28.5 258 395-682 18-299 (314)
212 3g4e_A Regucalcin; six bladed 99.5 4.4E-11 1.5E-15 118.4 31.2 243 396-670 14-262 (297)
213 3v9f_A Two-component system se 99.5 1.5E-08 5E-13 115.1 53.6 488 53-682 137-656 (781)
214 3g4e_A Regucalcin; six bladed 99.5 1E-10 3.5E-15 115.7 31.4 237 352-627 11-260 (297)
215 1fwx_A Nitrous oxide reductase 99.5 8E-12 2.8E-16 129.7 23.5 286 363-693 99-442 (595)
216 2ghs_A AGR_C_1268P; regucalcin 99.4 4.8E-10 1.6E-14 112.5 33.2 236 397-671 51-293 (326)
217 3dr2_A Exported gluconolactona 99.4 9.3E-11 3.2E-15 116.6 27.5 248 392-680 42-304 (305)
218 3dr2_A Exported gluconolactona 99.4 1.6E-10 5.5E-15 114.9 29.1 248 347-635 38-303 (305)
219 2qe8_A Uncharacterized protein 99.4 1.5E-11 5.2E-16 124.5 20.6 268 73-473 17-317 (343)
220 1mda_H Methylamine dehydrogena 99.4 6.7E-12 2.3E-16 125.9 17.5 275 376-692 47-356 (368)
221 1mda_H Methylamine dehydrogena 99.4 2.5E-11 8.7E-16 121.7 21.7 268 54-436 47-357 (368)
222 3hrp_A Uncharacterized protein 99.4 1.2E-10 4.2E-15 120.2 26.6 261 354-636 131-408 (409)
223 3iuj_A Prolyl endopeptidase; h 99.4 4.8E-11 1.6E-15 133.2 25.3 250 394-686 128-409 (693)
224 3hrp_A Uncharacterized protein 99.4 1.2E-10 4E-15 120.5 26.4 253 74-423 132-408 (409)
225 1kb0_A Quinohemoprotein alcoho 99.4 3.5E-11 1.2E-15 132.7 23.5 312 365-693 77-518 (677)
226 1xip_A Nucleoporin NUP159; bet 99.4 3.6E-11 1.2E-15 120.7 20.1 185 237-464 39-231 (388)
227 1kb0_A Quinohemoprotein alcoho 99.4 1.2E-10 4.1E-15 128.5 25.8 329 293-667 77-537 (677)
228 2qe8_A Uncharacterized protein 99.3 3.5E-10 1.2E-14 114.5 27.1 275 354-672 17-313 (343)
229 3iuj_A Prolyl endopeptidase; h 99.3 1.3E-10 4.3E-15 129.7 26.1 196 240-479 179-407 (693)
230 2ece_A 462AA long hypothetical 99.3 1.6E-09 5.5E-14 108.5 30.8 249 404-668 93-399 (462)
231 2ghs_A AGR_C_1268P; regucalcin 99.3 1.5E-09 5.3E-14 108.7 30.9 228 355-627 50-290 (326)
232 1yiq_A Quinohemoprotein alcoho 99.3 1.7E-10 6E-15 127.4 26.0 305 365-694 70-517 (689)
233 1yiq_A Quinohemoprotein alcoho 99.3 3.6E-10 1.2E-14 124.9 27.2 328 293-666 70-534 (689)
234 1xip_A Nucleoporin NUP159; bet 99.3 6.1E-11 2.1E-15 119.1 18.5 174 447-668 38-232 (388)
235 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.7E-09 5.9E-14 111.2 29.5 318 293-679 53-375 (376)
236 3s94_A LRP-6, low-density lipo 99.3 2.5E-06 8.4E-11 92.5 53.5 450 87-685 11-513 (619)
237 3q7m_A Lipoprotein YFGL, BAMB; 99.2 5.6E-09 1.9E-13 107.4 29.2 280 365-692 53-347 (376)
238 3hxj_A Pyrrolo-quinoline quino 99.2 2.5E-10 8.6E-15 115.2 16.2 300 78-477 24-324 (330)
239 3s94_A LRP-6, low-density lipo 99.2 1.3E-05 4.4E-10 86.9 55.4 471 52-685 17-554 (619)
240 2ece_A 462AA long hypothetical 99.2 2.9E-08 9.8E-13 99.6 29.9 240 363-627 93-399 (462)
241 1fwx_A Nitrous oxide reductase 99.2 1.9E-10 6.3E-15 119.6 13.0 279 292-640 100-433 (595)
242 3hxj_A Pyrrolo-quinoline quino 99.1 1.3E-09 4.5E-14 109.9 19.0 319 100-539 5-325 (330)
243 1kv9_A Type II quinohemoprotei 99.1 2.2E-08 7.4E-13 110.4 26.4 311 365-693 66-499 (668)
244 1npe_A Nidogen, entactin; glyc 99.1 3.8E-07 1.3E-11 88.4 31.4 250 85-459 1-263 (267)
245 4a0p_A LRP6, LRP-6, low-densit 99.0 5.4E-05 1.9E-09 82.1 59.9 453 86-684 7-510 (628)
246 2hz6_A Endoplasmic reticulum t 99.0 2.6E-10 8.8E-15 116.3 6.3 257 364-681 8-278 (369)
247 2ad6_A Methanol dehydrogenase 99.0 5.9E-08 2E-12 104.5 24.6 311 365-693 62-505 (571)
248 2hz6_A Endoplasmic reticulum t 99.0 2.4E-10 8.1E-15 116.6 5.3 229 405-691 8-249 (369)
249 1npe_A Nidogen, entactin; glyc 99.0 6.5E-07 2.2E-11 86.7 29.5 256 247-568 1-263 (267)
250 1w6s_A Methanol dehydrogenase 99.0 1.4E-07 4.8E-12 101.3 26.7 314 365-694 62-515 (599)
251 2iwa_A Glutamine cyclotransfer 99.0 9.1E-08 3.1E-12 90.2 22.1 203 356-587 23-238 (266)
252 1kv9_A Type II quinohemoprotei 99.0 5.6E-07 1.9E-11 99.1 31.1 331 293-668 66-520 (668)
253 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00012 4.2E-09 79.3 63.1 528 51-692 13-559 (628)
254 3nol_A Glutamine cyclotransfer 98.9 8.4E-08 2.9E-12 89.0 20.2 191 356-575 45-244 (262)
255 2ad6_A Methanol dehydrogenase 98.9 2E-07 7E-12 100.3 25.8 281 365-667 115-524 (571)
256 2iwa_A Glutamine cyclotransfer 98.9 5.5E-07 1.9E-11 84.9 24.8 208 283-539 22-238 (266)
257 3nol_A Glutamine cyclotransfer 98.9 2.1E-07 7E-12 86.4 21.4 188 447-670 43-245 (262)
258 1w6s_A Methanol dehydrogenase 98.9 7.5E-07 2.6E-11 95.7 27.0 276 368-668 124-535 (599)
259 1flg_A Protein (quinoprotein e 98.9 6.7E-07 2.3E-11 96.3 26.3 313 366-694 69-528 (582)
260 3nok_A Glutaminyl cyclase; bet 98.8 2.9E-07 9.9E-12 85.3 19.9 188 357-574 58-253 (268)
261 3mbr_X Glutamine cyclotransfer 98.8 9.1E-07 3.1E-11 81.4 21.5 191 355-574 22-222 (243)
262 1flg_A Protein (quinoprotein e 98.8 2.4E-06 8.3E-11 92.0 28.6 280 365-666 117-545 (582)
263 3nok_A Glutaminyl cyclase; bet 98.8 5.9E-07 2E-11 83.3 19.7 186 447-669 55-254 (268)
264 2fp8_A Strictosidine synthase; 98.7 5E-06 1.7E-10 83.0 26.8 267 282-586 19-313 (322)
265 2fp8_A Strictosidine synthase; 98.7 5E-06 1.7E-10 82.9 26.8 258 396-682 20-313 (322)
266 3mbr_X Glutamine cyclotransfer 98.7 1.7E-06 5.8E-11 79.7 20.9 188 447-670 21-224 (243)
267 2p4o_A Hypothetical protein; p 98.7 1.8E-05 6.2E-10 78.1 29.4 236 354-627 32-276 (306)
268 2p4o_A Hypothetical protein; p 98.7 1.4E-05 4.7E-10 79.0 26.9 233 395-671 32-279 (306)
269 1k3i_A Galactose oxidase precu 98.6 4.9E-06 1.7E-10 91.9 24.9 292 286-627 190-529 (656)
270 1k3i_A Galactose oxidase precu 98.6 2.3E-06 8E-11 94.5 21.1 286 358-669 190-530 (656)
271 2xbg_A YCF48-like protein; pho 98.6 0.00029 1E-08 69.9 33.6 282 281-636 35-320 (327)
272 3v64_C Agrin; beta propeller, 98.5 0.00017 5.9E-09 72.3 31.4 245 399-694 38-287 (349)
273 3v64_C Agrin; beta propeller, 98.5 0.00016 5.3E-09 72.6 30.8 254 356-657 36-294 (349)
274 3v65_B Low-density lipoprotein 98.5 0.0001 3.5E-09 75.1 29.4 245 367-658 89-338 (386)
275 2xe4_A Oligopeptidase B; hydro 98.5 2.8E-05 9.5E-10 87.1 27.3 112 283-426 175-305 (751)
276 1ijq_A LDL receptor, low-densi 98.5 0.00032 1.1E-08 69.3 31.7 236 367-646 3-246 (316)
277 3tc9_A Hypothetical hydrolase; 98.5 3.3E-05 1.1E-09 80.0 25.2 253 355-637 138-429 (430)
278 4hw6_A Hypothetical protein, I 98.5 5.4E-05 1.8E-09 78.3 26.2 254 355-637 140-432 (433)
279 3ei3_A DNA damage-binding prot 98.5 0.0058 2E-07 71.0 60.2 443 79-638 467-999 (1158)
280 3v65_B Low-density lipoprotein 98.5 9.8E-05 3.3E-09 75.3 27.4 237 408-694 89-330 (386)
281 2xe4_A Oligopeptidase B; hydro 98.4 3.5E-05 1.2E-09 86.4 25.8 248 396-686 175-462 (751)
282 1ijq_A LDL receptor, low-densi 98.4 0.00044 1.5E-08 68.3 30.7 236 408-692 3-248 (316)
283 3qqz_A Putative uncharacterize 98.4 0.00054 1.9E-08 64.1 29.1 206 447-680 27-251 (255)
284 3qqz_A Putative uncharacterize 98.4 0.00025 8.5E-09 66.4 26.2 227 389-637 21-252 (255)
285 2xbg_A YCF48-like protein; pho 98.4 0.0015 5.1E-08 64.8 33.6 276 353-679 35-319 (327)
286 3p5b_L Low density lipoprotein 98.4 0.00078 2.7E-08 68.9 31.5 248 367-658 85-340 (400)
287 3tc9_A Hypothetical hydrolase; 98.3 0.00031 1.1E-08 72.6 28.3 247 396-681 138-429 (430)
288 3p5b_L Low density lipoprotein 98.3 0.0011 3.7E-08 67.8 31.7 232 414-694 90-332 (400)
289 4hw6_A Hypothetical protein, I 98.3 0.00048 1.6E-08 71.1 29.2 247 396-681 140-432 (433)
290 3sov_A LRP-6, low-density lipo 98.3 0.00082 2.8E-08 66.2 29.3 233 414-694 11-250 (318)
291 3ei3_A DNA damage-binding prot 98.2 0.017 5.9E-07 67.1 68.3 523 43-678 337-951 (1158)
292 3kya_A Putative phosphatase; s 98.2 0.00084 2.9E-08 69.3 26.1 262 355-644 140-481 (496)
293 3m0c_C LDL receptor, low-densi 98.1 0.0017 5.8E-08 72.0 30.2 234 414-692 402-642 (791)
294 2xzh_A Clathrin heavy chain 1; 98.1 0.0061 2.1E-07 57.9 31.6 235 212-487 47-300 (365)
295 2xzh_A Clathrin heavy chain 1; 98.1 0.0063 2.2E-07 57.8 34.6 278 374-683 48-333 (365)
296 3sov_A LRP-6, low-density lipo 98.1 0.002 7E-08 63.3 27.5 234 249-545 6-245 (318)
297 3kya_A Putative phosphatase; s 98.1 0.0025 8.6E-08 65.8 28.9 258 396-686 140-479 (496)
298 3amr_A 3-phytase; beta-propell 98.1 0.001 3.5E-08 64.6 23.5 203 457-693 39-275 (355)
299 3amr_A 3-phytase; beta-propell 98.1 0.00066 2.3E-08 65.9 22.2 205 405-646 39-272 (355)
300 3m0c_C LDL receptor, low-densi 98.0 0.0026 8.9E-08 70.6 28.6 235 367-646 397-640 (791)
301 1bpo_A Protein (clathrin); cla 98.0 0.015 5E-07 57.7 34.9 279 374-685 47-334 (494)
302 3ott_A Two-component system se 98.0 0.038 1.3E-06 62.1 54.8 381 237-684 147-547 (758)
303 2ism_A Putative oxidoreductase 98.0 0.0014 4.7E-08 65.7 23.6 74 235-312 30-114 (352)
304 3ott_A Two-component system se 97.9 0.051 1.8E-06 61.0 43.4 370 235-681 62-447 (758)
305 1n7d_A LDL receptor, low-densi 97.8 6.4E-05 2.2E-09 82.9 11.7 241 374-658 385-634 (699)
306 3a9g_A Putative uncharacterize 97.8 0.0067 2.3E-07 60.6 25.0 246 235-516 28-329 (354)
307 2p9w_A MAL S 1 allergenic prot 97.8 0.0083 2.8E-07 57.8 24.1 222 396-638 14-265 (334)
308 3sre_A PON1, serum paraoxonase 97.8 0.0083 2.9E-07 59.2 24.7 219 448-690 51-308 (355)
309 2ism_A Putative oxidoreductase 97.7 0.016 5.4E-07 58.0 26.5 253 396-668 32-333 (352)
310 3a9g_A Putative uncharacterize 97.7 0.021 7.3E-07 56.9 27.3 59 354-412 259-329 (354)
311 1n7d_A LDL receptor, low-densi 97.7 0.00019 6.5E-09 79.2 12.3 230 414-691 384-623 (699)
312 3s25_A Hypothetical 7-bladed b 97.7 0.04 1.4E-06 53.3 27.2 245 243-583 21-290 (302)
313 1bpo_A Protein (clathrin); cla 97.7 0.055 1.9E-06 53.7 33.2 235 212-487 46-299 (494)
314 3sre_A PON1, serum paraoxonase 97.7 0.043 1.5E-06 54.1 27.5 195 348-576 44-287 (355)
315 3s25_A Hypothetical 7-bladed b 97.6 0.044 1.5E-06 53.0 25.7 215 404-684 23-257 (302)
316 3das_A Putative oxidoreductase 97.5 0.064 2.2E-06 52.7 26.7 255 233-517 29-326 (347)
317 2g8s_A Glucose/sorbosone dehyd 97.5 0.085 2.9E-06 52.6 28.3 243 353-627 17-341 (353)
318 3das_A Putative oxidoreductase 97.5 0.1 3.5E-06 51.2 27.4 250 347-627 25-326 (347)
319 2g8s_A Glucose/sorbosone dehyd 97.4 0.052 1.8E-06 54.1 24.8 249 235-516 17-340 (353)
320 2vpj_A Kelch-like protein 12; 97.3 0.041 1.4E-06 53.6 22.9 240 405-684 14-280 (301)
321 2p9w_A MAL S 1 allergenic prot 97.3 0.15 5.3E-06 49.0 28.5 167 236-425 13-215 (334)
322 3ii7_A Kelch-like protein 7; p 97.2 0.11 3.7E-06 50.7 24.0 236 367-641 14-275 (306)
323 3sbq_A Nitrous-oxide reductase 97.2 0.29 9.9E-06 50.3 29.4 299 368-693 73-489 (638)
324 3ii7_A Kelch-like protein 7; p 97.1 0.089 3E-06 51.3 22.1 237 406-684 12-274 (306)
325 1xi4_A Clathrin heavy chain; a 97.0 0.088 3E-06 60.6 23.0 233 212-485 46-297 (1630)
326 3pbp_A Nucleoporin NUP82; beta 97.0 0.05 1.7E-06 54.0 18.5 162 453-634 27-208 (452)
327 2xn4_A Kelch-like protein 2; s 97.0 0.11 3.9E-06 50.4 21.8 228 416-684 30-278 (302)
328 1cru_A Protein (soluble quinop 96.9 0.49 1.7E-05 48.8 29.3 107 353-465 26-162 (454)
329 3pbp_A Nucleoporin NUP82; beta 96.9 0.053 1.8E-06 53.8 18.0 149 212-380 39-208 (452)
330 1zgk_A Kelch-like ECH-associat 96.8 0.15 5.2E-06 49.7 21.1 240 404-684 23-289 (308)
331 2vpj_A Kelch-like protein 12; 96.8 0.13 4.3E-06 50.0 20.4 217 214-478 31-279 (301)
332 4asc_A Kelch repeat and BTB do 96.7 0.27 9.2E-06 48.1 22.3 232 416-684 13-279 (315)
333 4asc_A Kelch repeat and BTB do 96.7 0.27 9.1E-06 48.1 22.2 179 214-429 13-225 (315)
334 1xi4_A Clathrin heavy chain; a 96.6 0.18 6.1E-06 58.2 21.5 280 374-686 47-335 (1630)
335 1zgk_A Kelch-like ECH-associat 96.3 0.29 1E-05 47.6 19.6 218 213-478 38-288 (308)
336 2be1_A Serine/threonine-protei 96.3 0.12 4.2E-06 50.4 15.9 207 407-643 11-236 (339)
337 2xn4_A Kelch-like protein 2; s 96.3 0.24 8.4E-06 48.0 18.6 217 214-478 30-277 (302)
338 2uvk_A YJHT; unknown function, 96.1 0.48 1.6E-05 47.2 20.4 63 364-428 19-98 (357)
339 1tl2_A L10, protein (tachylect 96.0 0.18 6.2E-06 45.0 13.9 149 236-412 41-199 (236)
340 1tl2_A L10, protein (tachylect 95.9 0.18 6.2E-06 45.1 13.5 93 44-150 6-114 (236)
341 2woz_A Kelch repeat and BTB do 95.8 0.93 3.2E-05 44.2 20.3 177 215-428 25-234 (318)
342 2be1_A Serine/threonine-protei 95.8 0.81 2.8E-05 44.6 19.1 110 134-269 11-134 (339)
343 1cru_A Protein (soluble quinop 95.5 1.6 5.4E-05 45.0 21.4 126 447-575 27-163 (454)
344 2uvk_A YJHT; unknown function, 95.4 1.1 3.8E-05 44.5 19.8 148 375-544 168-348 (357)
345 3sbq_A Nitrous-oxide reductase 95.0 3.9 0.00013 42.3 22.5 255 409-683 73-409 (638)
346 2woz_A Kelch repeat and BTB do 94.6 3.6 0.00012 39.9 23.3 106 364-479 109-233 (318)
347 2zwa_A Leucine carboxyl methyl 93.7 3.6 0.00012 45.1 19.9 208 363-589 396-638 (695)
348 2zwa_A Leucine carboxyl methyl 91.4 9.6 0.00033 41.7 19.4 196 245-479 396-637 (695)
349 4hvt_A Ritya.17583.B, post-pro 91.3 19 0.00066 39.3 26.4 240 285-585 132-429 (711)
350 2wg3_C Hedgehog-interacting pr 86.0 33 0.0011 35.1 28.1 56 236-292 14-79 (463)
351 3qhy_B Beta-lactamase inhibito 83.8 29 0.001 32.6 16.9 222 396-682 25-246 (282)
352 3q6k_A 43.2 kDa salivary prote 83.6 36 0.0012 33.6 23.8 184 469-667 124-341 (381)
353 2wg3_C Hedgehog-interacting pr 80.1 56 0.0019 33.4 27.7 116 396-517 15-157 (463)
354 4hvt_A Ritya.17583.B, post-pro 79.4 77 0.0026 34.5 23.9 259 398-685 132-432 (711)
355 3q6k_A 43.2 kDa salivary prote 78.2 55 0.0019 32.3 21.3 183 376-574 124-342 (381)
356 4a9v_A PHOX; hydrolase, beta-p 77.7 64 0.0022 33.7 15.6 62 609-670 476-551 (592)
357 3zwu_A Alkaline phosphatase PH 77.2 62 0.0021 34.2 15.8 59 610-668 477-549 (592)
358 3uc1_A DNA gyrase subunit A; D 70.8 77 0.0027 30.5 22.9 199 366-587 4-229 (327)
359 4gq2_M Nucleoporin NUP120; bet 69.8 1.5E+02 0.0053 33.6 19.2 39 652-692 238-276 (950)
360 4gq2_M Nucleoporin NUP120; bet 68.7 45 0.0015 38.0 13.4 37 609-645 236-273 (950)
361 3qhy_B Beta-lactamase inhibito 59.2 1.2E+02 0.004 28.4 22.1 206 213-478 41-247 (282)
362 3b7f_A Glycosyl hydrolase, BNR 57.1 1.5E+02 0.0052 29.2 21.4 72 235-308 54-143 (394)
363 3zwu_A Alkaline phosphatase PH 52.6 41 0.0014 35.5 8.6 59 397-464 478-548 (592)
364 3f7f_A Nucleoporin NUP120; nuc 51.7 18 0.00062 38.9 5.8 28 134-161 232-259 (729)
365 4fhn_B Nucleoporin NUP120; pro 50.8 12 0.00043 43.6 4.9 39 116-161 239-277 (1139)
366 3l6v_A GYRA, DNA gyrase subuni 49.5 2E+02 0.0068 28.2 25.7 159 244-424 4-179 (370)
367 4a9v_A PHOX; hydrolase, beta-p 47.6 40 0.0014 35.2 7.3 49 79-127 481-543 (592)
368 4h3o_A Lectin; cadmium, plant 45.7 98 0.0034 23.6 8.7 73 45-126 21-93 (105)
369 4fhn_B Nucleoporin NUP120; pro 41.6 2E+02 0.007 33.4 13.2 41 652-694 240-280 (1139)
370 3mez_B Mannose-specific lectin 41.1 1.2E+02 0.0042 23.4 8.0 53 212-265 32-84 (113)
371 3b7f_A Glycosyl hydrolase, BNR 40.6 2.7E+02 0.0093 27.3 32.4 118 354-473 55-204 (394)
372 1zi0_A DNA gyrase subunit A; b 40.3 2.4E+02 0.0084 26.6 25.9 121 280-424 93-225 (307)
373 3no0_A DNA gyrase subunit A; D 39.4 2.4E+02 0.0081 26.2 22.1 192 243-476 32-245 (276)
374 1zi0_A DNA gyrase subunit A; b 36.1 2.8E+02 0.0097 26.1 28.4 215 404-637 1-225 (307)
375 1wp5_A Topoisomerase IV; broke 32.2 3.4E+02 0.012 25.9 25.5 206 245-477 3-225 (323)
376 1suu_A DNA gyrase subunit A; t 28.9 3.8E+02 0.013 25.4 29.3 209 363-586 6-231 (312)
377 4h3o_A Lectin; cadmium, plant 27.9 2E+02 0.0068 21.8 8.9 47 239-299 53-99 (105)
378 3uc1_A DNA gyrase subunit A; D 25.3 4.5E+02 0.015 25.1 27.1 214 354-585 42-278 (327)
379 1wp5_A Topoisomerase IV; broke 23.4 4.8E+02 0.017 24.8 25.4 211 404-638 3-225 (323)
380 3mez_A Mannose-specific lectin 20.4 2.8E+02 0.0095 21.2 6.5 23 79-101 54-76 (111)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9e-67 Score=577.36 Aligned_cols=534 Identities=19% Similarity=0.298 Sum_probs=438.6
Q ss_pred EEeecCCcceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecC
Q 040987 34 LIERKPRSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG 112 (762)
Q Consensus 34 ~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~ 112 (762)
..+.+|+ +.++|+|+.||.|++||........+.+|.+.|.+ ++|||||++||+++ |++|+|||. +++++.++.+
T Consensus 21 ~~a~spd--g~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~-l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~ 96 (577)
T 2ymu_A 21 GVAFSPD--GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG-VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 96 (577)
T ss_dssp EEEECTT--SSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEE-EEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC
T ss_pred EEEECCC--CCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEE-EEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEEC
Confidence 4455665 66999999999999999877677788999999997 99999999999999 799999996 7889999999
Q ss_pred CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecc-cccCCcccCCC-------
Q 040987 113 HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPS-LLRQPAQSDEK------- 183 (762)
Q Consensus 113 h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~-~~~~~~~~~~~------- 183 (762)
|...|.+++|+|++ .+|++++.|+++++|+...... .....+. .+..+.+.. ...........
T Consensus 97 ~~~~v~~~~~s~d~-------~~l~~~~~d~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (577)
T 2ymu_A 97 HSSSVRGVAFSPDG-------QTIASASDDKTVKLWNRNGQLL-QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168 (577)
T ss_dssp CSSCEEEEEECTTS-------SEEEEEETTSCEEEEETTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCCEEEEEECCCC-------CEEEEEcCCCceeeccccccee-eeccCCCCceeeeeeecCCccceecccccceecccc
Confidence 99999999999999 7889999999999999865543 3344343 666665511 00000000000
Q ss_pred -----------CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE
Q 040987 184 -----------PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI 252 (762)
Q Consensus 184 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 252 (762)
...........+... .++++.|+.|++||. +++.+ .....|...|.+++|+||+++|++
T Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~--------l~~~~~d~~v~~w~~-~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~ 238 (577)
T 2ymu_A 169 NGQLLQTLTGHSSSVWGVAFSPDGQT--------IASASDDKTVKLWNR-NGQLL-QTLTGHSSSVRGVAFSPDGQTIAS 238 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSC--------EEEEETTSEEEEECT-TSCEE-EEEECCSSCEEEEEECTTSSCEEE
T ss_pred ceeeeeeccCCCcceeeeeecCCCCE--------EEEEcCCCEEEEEeC-CCcEE-EEEecCCCCEEEEEECCCCCEEEE
Confidence 000000000011111 178899999999996 44544 567789999999999999999985
Q ss_pred -EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccc
Q 040987 253 -RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNE 331 (762)
Q Consensus 253 -~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 331 (762)
+.|+.|++|+..... .....+|...|.+++|+|++++|++++.|+.|++|+....
T Consensus 239 ~~~d~~i~~w~~~~~~------~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------------------ 294 (577)
T 2ymu_A 239 ASDDKTVKLWNRNGQL------LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------------------ 294 (577)
T ss_dssp EETTSCEEEECTTSCE------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------------------
T ss_pred EeCCCEEEEEeCCCCE------EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------------
Confidence 578999999965432 2566789999999999999999999999999999996432
Q ss_pred cCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEE
Q 040987 332 EERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (762)
....+.+|...|.+++|+|++++|++++.|+.|++||........+..+...+.+++|+|+++++++
T Consensus 295 -------------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 295 -------------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp -------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred -------------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 3467788999999999999999999999999999999988777778888999999999999999999
Q ss_pred EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 412 SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
++.++.+++|+. +++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||.. ++.+..+. .|
T Consensus 362 ~~~dg~v~~~~~-~~~~~~~~~~~~----------~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~----~~ 425 (577)
T 2ymu_A 362 ASDDKTVKLWNR-NGQLLQTLTGHS----------SSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT----GH 425 (577)
T ss_dssp EETTSEEEEEET-TCCEEEEEECCS----------SCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE----CC
T ss_pred EeCCCEEEEEcC-CCCEEEEecCCC----------CCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec----CC
Confidence 999999999996 577888888877 789999999999999999999999999964 44433332 22
Q ss_pred cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEE
Q 040987 492 QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAV 571 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~ 571 (762)
...|.+++|+||+++|++++ .|+.|++||.. ++....+ .+| ...|++++|+||+++|+
T Consensus 426 ------~~~v~~~~~s~d~~~l~~~~---------~d~~v~~w~~~-~~~~~~~-----~~~-~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 426 ------SSSVWGVAFSPDDQTIASAS---------DDKTVKLWNRN-GQLLQTL-----TGH-SSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp ------SSCEEEEEECTTSSEEEEEE---------TTSEEEEEETT-SCEEEEE-----ECC-SSCEEEEEECTTSCEEE
T ss_pred ------CCCeEEEEECCCCCEEEEEc---------CCCEEEEEECC-CCEEEEE-----cCC-CCCEEEEEEcCCCCEEE
Confidence 67799999999999999999 88999999964 3333333 578 88999999999999999
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccC
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLT 650 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~ 650 (762)
+++.|+.|++||.. ++.... ..+|...|++++|+|||++||+++ |+.|++||. +++++..+.+|.+
T Consensus 484 s~~~d~~i~iw~~~-~~~~~~-----------~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 484 SASDDKTVKLWNRN-GQLLQT-----------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 550 (577)
T ss_dssp EEETTSEEEEEETT-SCEEEE-----------EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred EEeCCCEEEEEcCC-CCEEEE-----------EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC
Confidence 99999999999964 333332 346889999999999999999998 999999996 5888999999999
Q ss_pred ceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 651 PIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 651 ~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+|++++|+|||++|+|++.|+. |++||
T Consensus 551 ~v~~~~fs~dg~~l~s~~~D~~--i~~Wd 577 (577)
T 2ymu_A 551 SVWGVAFSPDGQTIASASSDKT--VKLWN 577 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSC--EEEEC
T ss_pred CEEEEEEcCCCCEEEEEeCCCE--EEEeC
Confidence 9999999999999999999998 99997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-64 Score=560.50 Aligned_cols=531 Identities=11% Similarity=0.096 Sum_probs=422.0
Q ss_pred ecCCcceeEEEEecCCCeEEEEecCCc-ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc--eEEeeecC
Q 040987 37 RKPRSRSFIFAVARSSGLCRTAEYPAV-NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSLEG 112 (762)
Q Consensus 37 ~~~~~~~~~~a~~~~~g~i~~~~~~~~-~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~--~~~~~l~~ 112 (762)
.+|+ +.++|++. ++.|++|++.++ ....+.+|...|.+ ++|||||++||+|+ |++|+|||+.++ ....++.+
T Consensus 26 ~spd--g~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~-~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~ 101 (611)
T 1nr0_A 26 NTPA--GDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTV-AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 101 (611)
T ss_dssp ECTT--SSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred eCCC--CCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEE-EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecc
Confidence 3554 55888876 569999999864 44567899999997 99999999999999 799999999754 35678899
Q ss_pred CccceeEEEEeCCCCcccceeeeEEeeecC----CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCce
Q 040987 113 HKAPVTTVIVVPASTPATKILSYCWTASLD----GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKL 187 (762)
Q Consensus 113 h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d----~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~ 187 (762)
|.+.|.+++|+|++ ++|++++.+ ++|++|| .++....+.+|. .+.+++| .+++.. .
T Consensus 102 ~~~~v~~v~fs~dg-------~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f--------~p~~~~--~ 162 (611)
T 1nr0_A 102 FSGPVKDISWDSES-------KRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDF--------KPSRPF--R 162 (611)
T ss_dssp SSSCEEEEEECTTS-------CEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEE--------CSSSSC--E
T ss_pred cCCceEEEEECCCC-------CEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEE--------CCCCCe--E
Confidence 99999999999999 577777765 3677776 567777788887 8888877 333221 0
Q ss_pred EEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCc
Q 040987 188 FAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDV 266 (762)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~ 266 (762)
+ ++|+.|+.|++||..++++. ..+.+|...|.+++|+|||++||+ +.|+.|++||+.++
T Consensus 163 l-------------------~s~s~D~~v~lwd~~~~~~~-~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 163 I-------------------ISGSDDNTVAIFEGPPFKFK-STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp E-------------------EEEETTSCEEEEETTTBEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred E-------------------EEEeCCCeEEEEECCCCeEe-eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 1 67889999999999988877 567789999999999999999985 57999999999887
Q ss_pred hhhhheeeeee-e------ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCccc
Q 040987 267 EAERVVMRKIT-L------HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRD 339 (762)
Q Consensus 267 ~~~~~~~~~~~-~------~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (762)
+.. ..+ . +|.+.|.+++|+|++++|++++.|++|++||+.+++.....
T Consensus 223 ~~~-----~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~-------------------- 277 (611)
T 1nr0_A 223 TKT-----GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI-------------------- 277 (611)
T ss_dssp CEE-----EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------------------
T ss_pred cEe-----eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee--------------------
Confidence 753 222 2 79999999999999999999999999999999876543211
Q ss_pred CCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 340 NDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 340 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
..-..+...+..+.| +++.+++++.|+.+++||..+++.. .+..|...|.+++|+|+|++|++++.|+.|
T Consensus 278 -------~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v 348 (611)
T 1nr0_A 278 -------PVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI 348 (611)
T ss_dssp -------ECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -------cCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Confidence 000123344556666 6788999999999999999988754 456788999999999999999999999999
Q ss_pred EEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee-------------eE
Q 040987 419 HLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS-------------EV 484 (762)
Q Consensus 419 ~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------~~ 484 (762)
++||+.+++....+ .+|. ..+.+++|++++ .+++++.|+.+++|+........ .+
T Consensus 349 ~~Wd~~~~~~~~~~~~~h~----------~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 417 (611)
T 1nr0_A 349 NSWDISTGISNRVFPDVHA----------TMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417 (611)
T ss_dssp EEEETTTCCEEECSSCSCS----------SCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred EEEECCCCceeeecccCCc----------ceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence 99999998876654 3343 789999999776 68888999999999986543211 00
Q ss_pred Eeeccc----------------c-cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 485 QVCERN----------------H-QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 485 ~~~~~~----------------~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
.....+ . .....+...+.+++|+|||++||+++ .|+.|++||+.++.... +..
T Consensus 418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs---------~D~~v~lwd~~~~~~~~-~~~ 487 (611)
T 1nr0_A 418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGG---------QDSKVHVYKLSGASVSE-VKT 487 (611)
T ss_dssp EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEE---------TTSEEEEEEEETTEEEE-EEE
T ss_pred EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeC---------CCCeEEEEEccCCceee-eec
Confidence 000000 0 00000134578999999999999999 89999999998764321 111
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc-ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND-ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
.+| ...|++++|+|||++|++++.|++|++||+.+ ++..... ....|...|.+++|+|||++||++
T Consensus 488 ---~~h-~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~---------~~~~H~~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 488 ---IVH-PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN---------SWTFHTAKVACVSWSPDNVRLATG 554 (611)
T ss_dssp ---EEC-SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC---------CCCCCSSCEEEEEECTTSSEEEEE
T ss_pred ---cCC-CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee---------eeeecccceeEEEECCCCCEEEEE
Confidence 467 88999999999999999999999999999987 4433221 123488999999999999999999
Q ss_pred c-CCeEEEEeCCCCe-EE-EEeccc-cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 627 A-ETVITLWDPDRNV-LV-AVIGET-LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 627 ~-d~~i~iwd~~~~~-~~-~~l~~~-~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
+ |++|++||+++++ .+ ..+.+| ...|.+++|+||++ |++++.|+. |++||+.
T Consensus 555 s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~--i~lW~~~ 610 (611)
T 1nr0_A 555 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSN--IKFWNVP 610 (611)
T ss_dssp ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSC--EEEEECC
T ss_pred ECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCC--EEEEecc
Confidence 8 9999999999865 33 577789 89999999999998 999999999 9999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.2e-64 Score=556.90 Aligned_cols=518 Identities=19% Similarity=0.296 Sum_probs=423.4
Q ss_pred cceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 63 VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 63 ~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
.++..|.||++.|++ ++|||||++||+++ |+.|+|||. +++++++|.+|.+.|++++|+||+ ++|++++.
T Consensus 7 ~e~~~L~GH~~~V~~-~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg-------~~las~~~ 77 (577)
T 2ymu_A 7 KERNRLEAHSSSVRG-VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-------QTIASASD 77 (577)
T ss_dssp CEEEEECCCSSCEEE-EEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS-------SEEEEEET
T ss_pred EEeeEECCCCCcEEE-EEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCC-------CEEEEEeC
Confidence 456678999999998 99999999999999 699999995 889999999999999999999999 78999999
Q ss_pred CCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccC--------------------
Q 040987 142 DGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETT-------------------- 200 (762)
Q Consensus 142 d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 200 (762)
|++|+|||+ +++++..+..|. ++.+++| ++++.. ++....+......
T Consensus 78 d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~--------s~d~~~---l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (577)
T 2ymu_A 78 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAF--------SPDGQT---IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 145 (577)
T ss_dssp TSCEEEEET-TSCEEEEECCCSSCEEEEEE--------CTTSSE---EEEEETTSCEEEEETTCCEEEEECCCSSCEEEE
T ss_pred CCEEEEEEC-CCCEEEEEECCCCCEEEEEE--------CCCCCE---EEEEcCCCceeecccccceeeeccCCCCceeee
Confidence 999999995 678899998887 8888888 233321 2211100000000
Q ss_pred --cCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeee
Q 040987 201 --KSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKIT 277 (762)
Q Consensus 201 --~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~ 277 (762)
.......+.++.++.+++|+...... .....+...+.+++++|++++|++ +.|+.|++||... +. ....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~-~~-----~~~~ 217 (577)
T 2ymu_A 146 AFSPDGQTIASASDDKTVKLWNRNGQLL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QL-----LQTL 217 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTTSCEE--EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-CE-----EEEE
T ss_pred eeecCCccceecccccceeccccceeee--eeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC-cE-----EEEE
Confidence 00000014445566666666543332 355668889999999999999985 4789999999654 32 2566
Q ss_pred eccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 278 LHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
.+|...|.+++|+|++++|++++.|+.|++|+... +.+..+.+|...|.
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-------------------------------~~~~~~~~~~~~v~ 266 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------------------------------QLLQTLTGHSSSVN 266 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-------------------------------CEEEEECCCSSCEE
T ss_pred ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------------------------CEEEEEecCCCCEE
Confidence 78999999999999999999999999999999643 23467788999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
+++|+|+++.|++++.|+.|++||........+..|...|.+++|+|+++.+++++.|+.|++||... ..+..+.+|.
T Consensus 267 ~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~- 344 (577)
T 2ymu_A 267 GVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHS- 344 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCS-
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCC-
Confidence 99999999999999999999999987655566788899999999999999999999999999999874 4556677766
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
..+.+++|+|++++|++++.|+.+++||.. ++.+..+. .| ...|.+++|+|||++|++++
T Consensus 345 ---------~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~----~~------~~~v~~~~~s~dg~~l~~~~ 404 (577)
T 2ymu_A 345 ---------SSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT----GH------SSSVRGVAFSPDGQTIASAS 404 (577)
T ss_dssp ---------SCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEE----CC------SSCEEEEEECTTSSCEEEEE
T ss_pred ---------CCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEec----CC------CCCeEEEEECCCCCEEEEEe
Confidence 788999999999999999999999999964 44443332 22 66799999999999999999
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
.|+.|++||.. ++....+ .+| ...|++++|+||+++|++++.|+.|++||.... ....
T Consensus 405 ---------~d~~v~~~~~~-~~~~~~~-----~~~-~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-~~~~----- 462 (577)
T 2ymu_A 405 ---------DDKTVKLWNRN-GQLLQTL-----TGH-SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-LLQT----- 462 (577)
T ss_dssp ---------TTSEEEEECTT-CCEEEEE-----ECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-EEEE-----
T ss_pred ---------CCCEEEEEeCC-CCEEEEe-----cCC-CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-EEEE-----
Confidence 88999999954 4333333 578 889999999999999999999999999997532 2222
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEE
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLS 676 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~ 676 (762)
...|...|++++|+||+++|++++ |+.|++||. +++++..+.+|...|++++|+|||++|++++.|+. |+
T Consensus 463 ------~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~--v~ 533 (577)
T 2ymu_A 463 ------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT--VK 533 (577)
T ss_dssp ------EECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE--EE
T ss_pred ------EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE--EE
Confidence 346889999999999999999998 999999995 58889999999999999999999999999999998 99
Q ss_pred EEECCCCceeeEEEEeec
Q 040987 677 VWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 677 vwd~~~~~~~~~~~~~~~ 694 (762)
+||. +++.+..+..|..
T Consensus 534 lwd~-~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 534 LWNR-NGQLLQTLTGHSS 550 (577)
T ss_dssp EECT-TSCEEEEEECCSS
T ss_pred EEeC-CCCEEEEEcCCCC
Confidence 9996 6778777777654
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7e-62 Score=538.09 Aligned_cols=506 Identities=16% Similarity=0.166 Sum_probs=403.8
Q ss_pred cCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEe
Q 040987 70 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWD 149 (762)
Q Consensus 70 ~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd 149 (762)
.+++.+.+ ++|||||++||++.++.|+|||+++++.+.++.+|...|++++|+|+| .+||||+.|++|+|||
T Consensus 16 ~~~g~~~~-~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg-------~~lasg~~d~~v~lWd 87 (611)
T 1nr0_A 16 TARGTAVV-LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG-------YYCASGDVHGNVRIWD 87 (611)
T ss_dssp CCTTCCCC-CEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS-------SEEEEEETTSEEEEEE
T ss_pred cccCceeE-EeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCC-------cEEEEEeCCCCEEEeE
Confidence 44666775 999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred CCCcc--eEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccc
Q 040987 150 FSVPE--LLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRL 226 (762)
Q Consensus 150 ~~~~~--~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~ 226 (762)
+.+++ ....+..|. ++.+++| +++++. ++....+ ....+.|++|| .++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~v~~v~f--------s~dg~~---l~~~~~~---------------~~~~~~v~~wd--~~~~ 139 (611)
T 1nr0_A 88 TTQTTHILKTTIPVFSGPVKDISW--------DSESKR---IAAVGEG---------------RERFGHVFLFD--TGTS 139 (611)
T ss_dssp SSSTTCCEEEEEECSSSCEEEEEE--------CTTSCE---EEEEECC---------------SSCSEEEEETT--TCCB
T ss_pred CCCCcceeeEeecccCCceEEEEE--------CCCCCE---EEEEECC---------------CCceeEEEEee--CCCC
Confidence 97654 455677776 8899988 455542 3322100 01235777887 4555
Q ss_pred cceeeeccCCCceEEEECCCCC-EEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 227 AGGVTLAEMKEPQVITISSSGK-YFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~-~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
. ..+.+|...|.+++|+|++. .|+ ++.|+.|++||..+++.. ..+.+|...|.+++|+||+++||+++.|+.
T Consensus 140 ~-~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-----~~l~~H~~~V~~v~fspdg~~las~s~D~~ 213 (611)
T 1nr0_A 140 N-GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-----STFGEHTKFVHSVRYNPDGSLFASTGGDGT 213 (611)
T ss_dssp C-BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred c-ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-----eeeccccCceEEEEECCCCCEEEEEECCCc
Confidence 4 45678999999999999997 466 557999999998877654 667799999999999999999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
|++||+.+++...... .......+|.+.|.+++|+|+|++|++++.|++|++||+.+
T Consensus 214 i~lwd~~~g~~~~~~~-----------------------~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 214 IVLYNGVDGTKTGVFE-----------------------DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp EEEEETTTCCEEEECB-----------------------CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEECCCCcEeeeec-----------------------cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 9999987765432100 00001227999999999999999999999999999999998
Q ss_pred CceeccCC----CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 385 GKKKFLPR----IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 385 ~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
++...... +......+.| +++.+++++.++.+++|+...++....+.+|. ..|.+++|+|++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~----------~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 271 LKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHN----------KAITALSSSADGKT 338 (611)
T ss_dssp TEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTSSE
T ss_pred CceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC----------CCEEEEEEeCCCCE
Confidence 87753222 2234556666 67899999999999999999998888888887 78999999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
|++++.|+.|++||+.++.....+ ... |...+.+++|++++ .+++++ .|+.+++|+..+..
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~~~~~---~~~------h~~~v~~~~~s~~~-~l~s~s---------~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGISNRVF---PDV------HATMITGIKTTSKG-DLFTVS---------WDDHLKVVPAGGSG 399 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEECS---SCS------CSSCEEEEEECTTS-CEEEEE---------TTTEEEEECSSSSS
T ss_pred EEEEeCCCcEEEEECCCCceeeec---ccC------CcceEEEEEECCCC-cEEEEE---------cCCceEEeecCCcc
Confidence 999999999999999987643321 122 26779999999876 566776 78899999976543
Q ss_pred cee-------------EEE----------------------EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 541 KEF-------------TLS----------------------TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 541 ~~~-------------~~~----------------------~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
... .+. ......| ...+.+++|+|||++|++++.|++|++||+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~-~~~v~~va~spdg~~lasgs~D~~v~lwd~~ 478 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI-SYNSSCVALSNDKQFVAVGGQDSKVHVYKLS 478 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEEEE
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec-CCCceEEEEeCCCCEEEEeCCCCeEEEEEcc
Confidence 210 000 0000124 5678999999999999999999999999997
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC-CeEEEE--eccccCceeEEEEeCCC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR-NVLVAV--IGETLTPIMNMSFVGSS 661 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~-~~~~~~--l~~~~~~v~~~~~s~dg 661 (762)
++..... .. ..|...|++++|||||++|++++ |++|++||+.+ ++++.. +.+|...|.+++|+|||
T Consensus 479 ~~~~~~~---------~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg 548 (611)
T 1nr0_A 479 GASVSEV---------KT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 548 (611)
T ss_dssp TTEEEEE---------EE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred CCceeee---------ec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCC
Confidence 6542211 11 35789999999999999999998 99999999998 666554 34599999999999999
Q ss_pred CEEEEEEcCCCCeEEEEECCCCc
Q 040987 662 EYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 662 ~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
++|++++.|+. |++||++++.
T Consensus 549 ~~lasgs~D~~--v~lW~~~~~~ 569 (611)
T 1nr0_A 549 VRLATGSLDNS--VIVWNMNKPS 569 (611)
T ss_dssp SEEEEEETTSC--EEEEETTCTT
T ss_pred CEEEEEECCCc--EEEEECCCcc
Confidence 99999999999 9999999875
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-60 Score=575.65 Aligned_cols=537 Identities=17% Similarity=0.205 Sum_probs=455.9
Q ss_pred EEEEeecCCcceeEEEEecCCCeEEEEecCCcce-eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEee
Q 040987 32 HILIERKPRSRSFIFAVARSSGLCRTAEYPAVNS-KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS 109 (762)
Q Consensus 32 ~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~-~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~ 109 (762)
......++. +.++|+|+.||.|++||..+++. ..+.+|.+.|.+ ++|+|||++||+++ |+.|+|||+.+++++.+
T Consensus 618 v~~~~~s~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 618 VYHACFSQD--GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC-CAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp EEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEEECCC--CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEE-EEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 334455555 66999999999999999998665 466899999998 99999999999999 79999999999999999
Q ss_pred ecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceE
Q 040987 110 LEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 110 l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
+.+|...|.+++|+|+++. .++++++.|++|++||+.+++++..+..|. ++.+++| .+++.. +
T Consensus 695 ~~~~~~~v~~~~~~~~~~~-----~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~--------sp~~~~---l 758 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNH-----LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF--------SPDDEL---L 758 (1249)
T ss_dssp EECCSSCEEEEEECSSSSC-----CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEE--------CSSTTE---E
T ss_pred EcCCCCcEEEEEEecCCCc-----eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEE--------ecCCCE---E
Confidence 9999999999999996420 478899999999999999999999998887 8888877 333332 1
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee------------ccCCCceEEEECCCCCEEEEEeCC
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL------------AEMKEPQVITISSSGKYFGIRKQR 256 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~------------~~~~~v~~~~~spdg~~la~~~~~ 256 (762)
++|+.||.|++||+.+++....... .....+.+++|+|+|++++++.++
T Consensus 759 -------------------~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~ 819 (1249)
T 3sfz_A 759 -------------------ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819 (1249)
T ss_dssp -------------------EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred -------------------EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence 6678999999999999877633321 123478899999999999999899
Q ss_pred eEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCC
Q 040987 257 KLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPG 336 (762)
Q Consensus 257 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (762)
.+.+||+.++.. ......+|...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 820 ~v~~~d~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~---------------------- 873 (1249)
T 3sfz_A 820 KVLLFDIHTSGL----LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL---------------------- 873 (1249)
T ss_dssp EEEEEETTTCCE----EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE----------------------
T ss_pred cEEEEEecCCCc----eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----------------------
Confidence 999999998874 334555899999999999999999999999999999997664
Q ss_pred cccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-----------------------------
Q 040987 337 VRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK----------------------------- 387 (762)
Q Consensus 337 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~----------------------------- 387 (762)
....+.+|...|.+++|+|+|++|++++.|+.|++||+.+...
T Consensus 874 --------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1249)
T 3sfz_A 874 --------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945 (1249)
T ss_dssp --------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred --------eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence 3467789999999999999999999999999999999754211
Q ss_pred ---------eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 388 ---------KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 388 ---------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
.........+.+++++|+++++++++.+|.|++|++.+++....+.+|. ..|.+++|+|++
T Consensus 946 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~----------~~v~~l~~s~dg 1015 (1249)
T 3sfz_A 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK----------KAVRHIQFTADG 1015 (1249)
T ss_dssp EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS----------SCCCCEEECSSS
T ss_pred eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC----------CceEEEEECCCC
Confidence 0011124578999999999999999999999999999999998888877 788999999999
Q ss_pred CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 459 GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
+++++++.||.|++||+.+++.... ..| ...+.+++|+|++. +++++ .|+.|++||+.+
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~------~~~v~~~~~~~~~~-l~~~~---------~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTGDYVFL-----QAH------QETVKDFRLLQDSR-LLSWS---------FDGTVKVWNVIT 1074 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTTEEECC-----BCC------SSCEEEEEECSSSE-EEEEE---------SSSEEEEEETTT
T ss_pred CEEEEEcCCCEEEEEECCCCceEEE-----ecC------CCcEEEEEEcCCCc-EEEEE---------CCCcEEEEECCC
Confidence 9999999999999999998754321 122 67799999999775 45565 789999999999
Q ss_pred CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC
Q 040987 539 QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA 618 (762)
Q Consensus 539 ~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 618 (762)
++....+ .+| ...|.+++|+|+++++++++.|++|++||+.++.....+ ..|...|++++|+|
T Consensus 1075 ~~~~~~~-----~~~-~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-----------~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A 1075 GRIERDF-----TCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-----------KGHNGCVRCSAFSL 1137 (1249)
T ss_dssp TCCCEEE-----ECC-SSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-----------CCCSSCEEEEEECS
T ss_pred CceeEEE-----ccc-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-----------ccCCCcEEEEEECC
Confidence 9877665 568 889999999999999999999999999999988766554 36889999999999
Q ss_pred CCcEEEEEc-CCeEEEEeCCCCeEEEEe---------ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeE
Q 040987 619 DGSVLAVAA-ETVITLWDPDRNVLVAVI---------GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688 (762)
Q Consensus 619 dg~~la~~~-d~~i~iwd~~~~~~~~~l---------~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~ 688 (762)
||++|++++ ||.|++||+.+++++..+ .+|.+.|.+++|+|||++|++++ |. |++||+.+++....
T Consensus 1138 dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~--v~vwd~~~g~~~~~ 1213 (1249)
T 3sfz_A 1138 DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GY--LKWWNVATGDSSQT 1213 (1249)
T ss_dssp SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SS--EEEBCSSSCBCCCC
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--Ce--EEEEECCCCceeee
Confidence 999999998 999999999999877665 67889999999999999999985 66 99999999988765
Q ss_pred EEEe
Q 040987 689 YLLH 692 (762)
Q Consensus 689 ~~~~ 692 (762)
+..+
T Consensus 1214 ~~~~ 1217 (1249)
T 3sfz_A 1214 FYTN 1217 (1249)
T ss_dssp CCCS
T ss_pred eecc
Confidence 5544
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-57 Score=509.17 Aligned_cols=506 Identities=12% Similarity=0.104 Sum_probs=420.8
Q ss_pred ecCCcceeEEEEecCCCeEEEEecCCc-----ceeeeecCccc-ccCCceeec--CCCEEEEEe-CCEEEEEEcccc---
Q 040987 37 RKPRSRSFIFAVARSSGLCRTAEYPAV-----NSKMIRGGRSY-VSSPPAFSN--DVKRLLVCT-SNTVSIFSTSTG--- 104 (762)
Q Consensus 37 ~~~~~~~~~~a~~~~~g~i~~~~~~~~-----~~~~~~~h~~~-v~~~~~~s~--dg~~la~~~-~~~i~iwd~~~~--- 104 (762)
.+|. +.++|+++ ++.|++|++.++ ....+.+|... |.+ ++|+| ||++||+++ |+.|+|||+.++
T Consensus 26 ~spd--g~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~-~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~ 101 (615)
T 1pgu_A 26 YDPT--TNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT-VKFSPIKGSQYLCSGDESGKVIVWGWTFDKES 101 (615)
T ss_dssp EETT--TTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEE-EEECSSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred ECCC--CCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEE-EEECcCCCCCEEEEecCCCEEEEEeCCCCccc
Confidence 3444 55888877 889999999976 56678999999 997 99999 999999999 799999999855
Q ss_pred -----eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC----CeEEEEeCCCcceEEEEEecc-ceEEEeecccc
Q 040987 105 -----LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD----GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLL 174 (762)
Q Consensus 105 -----~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d----~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~ 174 (762)
+.+..+.+|...|.+++|+|++ .+|++++.| +.|.+|| .++.+..+..|. .+.++.|
T Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~---- 168 (615)
T 1pgu_A 102 NSVEVNVKSEFQVLAGPISDISWDFEG-------RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHL---- 168 (615)
T ss_dssp TEEEEEEEEEEECCSSCEEEEEECTTS-------SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEE----
T ss_pred ccccccccchhhcccccEEEEEEeCCC-------CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEE----
Confidence 7888999999999999999999 688888887 6888888 677888888877 7888877
Q ss_pred cCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCC---CceEEEECCC-CCEE
Q 040987 175 RQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMK---EPQVITISSS-GKYF 250 (762)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~spd-g~~l 250 (762)
.+++.. .+ ++++.|+.|++||+.+++.+ .....|.. .|.+++|+|+ +++|
T Consensus 169 ----~~~~~~--~l-------------------~~~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 169 ----KQSRPM--RS-------------------MTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp ----CSSSSC--EE-------------------EEEETTTEEEEEETTTBEEE-EEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred ----CCCCCc--EE-------------------EEEeCCCcEEEEeCCCccee-eeecccCCCCceEEEEEECCCCCCEE
Confidence 333321 01 56789999999999999888 55667888 9999999999 9999
Q ss_pred EEE-eCCeEEEEEccCchhhhheeeeee-e---ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccc
Q 040987 251 GIR-KQRKLLIWKVPDVEAERVVMRKIT-L---HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNL 325 (762)
Q Consensus 251 a~~-~~~~i~iwd~~~~~~~~~~~~~~~-~---~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 325 (762)
+++ .++.|++||+.+++.. ... . .|...|.+++|+ ++++|++++.||.|++||+.+++..
T Consensus 223 ~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~--------- 287 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSGEFL-----KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV--------- 287 (615)
T ss_dssp EEEETTCCEEEEETTTCCEE-----EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE---------
T ss_pred EEEeCCCeEEEEECCCCCEe-----EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE---------
Confidence 854 6899999999988754 333 4 899999999999 9999999999999999999876543
Q ss_pred cccccccCCCCcccCCccccceeeecc----ccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEE
Q 040987 326 NLMNNEEERPGVRDNDDADLCTTWHWH----PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYF 400 (762)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~ 400 (762)
..+..+ ...+.++.|+ +++++++++.|+.|++||+.+++.. .+..|...|.++
T Consensus 288 ---------------------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~ 345 (615)
T 1pgu_A 288 ---------------------QKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITAL 345 (615)
T ss_dssp ---------------------EEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred ---------------------EEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEE
Confidence 333333 4677888886 8899999999999999999987764 466788899999
Q ss_pred EeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC-
Q 040987 401 TESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR- 479 (762)
Q Consensus 401 ~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~- 479 (762)
+| |+ +++++.|+.|++|++. .+. .+|. ..|.+++| +++..+++++.|+.+++||+.+++
T Consensus 346 ~~-~~---l~~~~~dg~i~~w~~~---~~~--~~~~----------~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~ 405 (615)
T 1pgu_A 346 TV-NP---LISGSYDGRIMEWSSS---SMH--QDHS----------NLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF 405 (615)
T ss_dssp ET-TT---TEEEETTSCEEETTTT---EEE--CCCC----------SCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC
T ss_pred Ee-cC---cEEECCCCeEEEEEch---hhc--Cccc----------CceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc
Confidence 99 88 8889999999999988 222 4444 67888888 556788888888888888876432
Q ss_pred ---------------------------------ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 480 ---------------------------------GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 480 ---------------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
.+..+. +...+.+++|+ ++++++++
T Consensus 406 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~l~~~~--------- 463 (615)
T 1pgu_A 406 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-----------LNSPGSAVSLS--QNYVAVGL--------- 463 (615)
T ss_dssp SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-----------CSSCEEEEEEC--SSEEEEEE---------
T ss_pred cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-----------cCCCceEEEEc--CCEEEEee---------
Confidence 111111 15668899999 88999998
Q ss_pred c-eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc
Q 040987 527 S-LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 527 ~-d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
. ++.|++||+.++.... ..+.+| ...|++++|+|++++|++++.||.|++||+.+++....+. .
T Consensus 464 ~~d~~i~~~~~~~~~~~~----~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~----------~ 528 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSF----DLKTPL-RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW----------A 528 (615)
T ss_dssp TTTSCEEEEETTEEEEEE----ECSSCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS----------C
T ss_pred cCCCeEEEEECCCccccc----cccCCc-cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee----------c
Confidence 7 8999999998764331 234678 8899999999999999999999999999999887765542 1
Q ss_pred cCCCCeEEEEEcC----------CCcEEEEEc-CCeEEEEeCCCC-eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCC
Q 040987 606 YKKKAMTAAAFSA----------DGSVLAVAA-ETVITLWDPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKP 673 (762)
Q Consensus 606 ~~~~~i~~~~~s~----------dg~~la~~~-d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~ 673 (762)
.|...|++++|+| ++++|++++ |+.|++||+.++ +++..+.+|...|.+++|+||++ |++++.|+.
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~- 606 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADAC- 606 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSC-
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCce-
Confidence 2889999999999 999999998 999999999998 88889999999999999999999 999999998
Q ss_pred eEEEEECCC
Q 040987 674 QLSVWNMSK 682 (762)
Q Consensus 674 ~v~vwd~~~ 682 (762)
|++|++++
T Consensus 607 -v~iw~~~~ 614 (615)
T 1pgu_A 607 -IKRWNVVL 614 (615)
T ss_dssp -EEEEEEC-
T ss_pred -EEEEeeec
Confidence 99999875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-57 Score=549.96 Aligned_cols=552 Identities=13% Similarity=0.112 Sum_probs=444.6
Q ss_pred eeEEEEecCCCeEEEEecCCccee-eeecCcccccCCceeec--CCCEEEEEe-CCEEEEEEcccceEEeeecCCcccee
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSN--DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVT 118 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~--dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~ 118 (762)
+.++|+|+.||.|++||+.+++.. .+.+|...|.+ ++|+| ++.++++++ |+.|++||+.+++++.++.+|.+.|+
T Consensus 669 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC-CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE-EEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEE-EEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence 669999999999999999986654 56899999998 99999 556899998 79999999999999999999999999
Q ss_pred EEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccc--------------eEEEeecccccCCcccCCCC
Q 040987 119 TVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFS--------------IFSMVIPSLLRQPAQSDEKP 184 (762)
Q Consensus 119 ~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~~~~~ 184 (762)
+++|+|++ .+|++++.|++|++||+.+++....+..... +.+++| ++++..
T Consensus 748 ~~~~sp~~-------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~dg~~ 812 (1249)
T 3sfz_A 748 HCRFSPDD-------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW--------SADGDK 812 (1249)
T ss_dssp EEEECSST-------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB--------CTTSSE
T ss_pred EEEEecCC-------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE--------CCCCCE
Confidence 99999999 6889999999999999999998887764431 112211 222221
Q ss_pred CceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEc
Q 040987 185 PKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKV 263 (762)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~ 263 (762)
+..+.++.+.+||+.++........+|...+.+++|+|++++++++ .++.|++|++
T Consensus 813 -----------------------l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~ 869 (1249)
T 3sfz_A 813 -----------------------IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869 (1249)
T ss_dssp -----------------------EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET
T ss_pred -----------------------EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Confidence 1123478999999999999877777999999999999999999865 7899999999
Q ss_pred cCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccccc-ccccccc-------cCCC
Q 040987 264 PDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMN-LNLMNNE-------EERP 335 (762)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~ 335 (762)
.++... ....+|...|.+++|+|++++|++++.||.|++|++.+............ ...+... ....
T Consensus 870 ~~~~~~-----~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1249)
T 3sfz_A 870 DSRLKV-----ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944 (1249)
T ss_dssp TTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred CCCcee-----eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence 988754 66779999999999999999999999999999999754321110000000 0000000 0000
Q ss_pred CcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEec
Q 040987 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCA 414 (762)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (762)
..... ..........+...+.+++|+|+++++++++.+|.|++||+.+++.. ....|...|.+++|+|+++++++++.
T Consensus 945 ~~~~~-~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1023 (1249)
T 3sfz_A 945 GLQLI-AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023 (1249)
T ss_dssp SEEEE-EESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS
T ss_pred ceEEE-ecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC
Confidence 00000 00001111224567999999999999999999999999999988875 45678889999999999999999999
Q ss_pred CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCC
Q 040987 415 DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPG 494 (762)
Q Consensus 415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 494 (762)
|+.|++||+.+++... +..|. ..+.+++|+|++ .+++++.|+.|++||+.+++....+...
T Consensus 1024 dg~i~vwd~~~~~~~~-~~~~~----------~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~------- 1084 (1249)
T 3sfz_A 1024 DSVIQVWNWQTGDYVF-LQAHQ----------ETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCH------- 1084 (1249)
T ss_dssp SSBEEEEETTTTEEEC-CBCCS----------SCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECC-------
T ss_pred CCEEEEEECCCCceEE-EecCC----------CcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEccc-------
Confidence 9999999999987763 33444 789999999976 5788899999999999999877665432
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
...+.+++|+|+++++++++ .|+.|++||+.++.....+ .+| ...|++++|+|++++|++++
T Consensus 1085 ---~~~v~~~~~s~d~~~l~s~s---------~d~~v~iwd~~~~~~~~~l-----~~h-~~~v~~~~~s~dg~~lat~~ 1146 (1249)
T 3sfz_A 1085 ---QGTVLSCAISSDATKFSSTS---------ADKTAKIWSFDLLSPLHEL-----KGH-NGCVRCSAFSLDGILLATGD 1146 (1249)
T ss_dssp ---SSCCCCEEECSSSSSCEEEC---------CSSCCCEECSSSSSCSBCC-----CCC-SSCEEEEEECSSSSEEEEEE
T ss_pred ---CCcEEEEEECCCCCEEEEEc---------CCCcEEEEECCCcceeeee-----ccC-CCcEEEEEECCCCCEEEEEe
Confidence 66789999999999999999 8899999999988876655 578 88999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeE
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMN 654 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~ 654 (762)
.||.|++||+.+++...... ..........|...|++++|+|||++|++++ |.|++||+.+++.+..+..|...|.+
T Consensus 1147 ~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~~~~i~~ 1223 (1249)
T 3sfz_A 1147 DNGEIRIWNVSDGQLLHSCA--PISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKK 1223 (1249)
T ss_dssp TTSCCCEEESSSSCCCCCCC--CCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCSSCCCCC
T ss_pred CCCEEEEEECCCCceEEEec--cccccccccccCceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeeeccCCcccE
Confidence 99999999999888765542 1112222345788999999999999999886 89999999999999999999999999
Q ss_pred EEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 655 MSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 655 ~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
++|+|||++|++++.||. |++|++.
T Consensus 1224 ~~~s~dg~~l~~~~~dg~--v~vw~l~ 1248 (1249)
T 3sfz_A 1224 IHVSPDFRTYVTVDNLGI--LYILQVL 1248 (1249)
T ss_dssp CEECSSSCCEEEECTTCC--EEEECCC
T ss_pred EEECCCCCEEEEecCCcE--EEEEeec
Confidence 999999999999999998 9999974
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.4e-55 Score=492.21 Aligned_cols=486 Identities=13% Similarity=0.142 Sum_probs=406.0
Q ss_pred ecCcccccCCceeecCCCEEEEEeCCEEEEEEcccc----eEEeeecCCccc-eeEEEEeC--CCCcccceeeeEEeeec
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTG----LQISSLEGHKAP-VTTVIVVP--ASTPATKILSYCWTASL 141 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~----~~~~~l~~h~~~-V~~v~~s~--~~~~~~~l~~~l~s~s~ 141 (762)
..|.+.|.+ ++|||||++||+++++.|.|||++++ +.+..+.+|... |++++|+| ++ .+|++++.
T Consensus 15 ~~~~~~v~~-~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-------~~l~s~~~ 86 (615)
T 1pgu_A 15 STQRNFTTH-LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-------QYLCSGDE 86 (615)
T ss_dssp CCCTTCCCC-CEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-------CEEEEEET
T ss_pred CCccCceeE-EEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC-------CEEEEecC
Confidence 468899997 99999999999999999999999999 899999999999 99999999 99 78999999
Q ss_pred CCeEEEEeCCCc--------ceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCc
Q 040987 142 DGTIKYWDFSVP--------ELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTM 212 (762)
Q Consensus 142 d~~i~vWd~~~~--------~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 212 (762)
|++|++||+.++ +.+..+..+. ++.+++| +++++. ++ +++.
T Consensus 87 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~---l~-------------------~~~~ 136 (615)
T 1pgu_A 87 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW--------DFEGRR---LC-------------------VVGE 136 (615)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE--------CTTSSE---EE-------------------EEEC
T ss_pred CCEEEEEeCCCCcccccccccccchhhcccccEEEEEE--------eCCCCE---EE-------------------Eecc
Confidence 999999999855 6777777666 8888877 444432 22 2333
Q ss_pred c----ccEEEEecCCccccceeeeccCCCceEEEECCCCC-EEE-EEeCCeEEEEEccCchhhhheeeeeeeccCc---C
Q 040987 213 N----GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGK-YFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTK---K 283 (762)
Q Consensus 213 d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~---~ 283 (762)
+ +.|.+|| .++.. ....+|...|.+++|+|+++ +++ ++.|+.|++||+.+++.. ..+..|.. .
T Consensus 137 ~~~~~~~v~~~d--~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-----~~~~~~~~~~~~ 208 (615)
T 1pgu_A 137 GRDNFGVFISWD--SGNSL-GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-----ASDRTHHKQGSF 208 (615)
T ss_dssp CSSCSEEEEETT--TCCEE-EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-----EEECSSSCTTCC
T ss_pred CCCCccEEEEEE--CCCcc-eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee-----eeecccCCCCce
Confidence 3 6888888 45555 56678999999999999998 566 557899999999988754 56678888 9
Q ss_pred eEEEEEcCC-CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceee-e---ccccceeE
Q 040987 284 LTVLAFHPT-QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW-H---WHPSEVSV 358 (762)
Q Consensus 284 v~~~~~sp~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~ 358 (762)
|.+++|+|+ +++|++++.||.|++||+.+++.. ..+ . .|...|.+
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------------------~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL------------------------------KYIEDDQEPVQGGIFA 258 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE------------------------------EECCBTTBCCCSCEEE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe------------------------------EEecccccccCCceEE
Confidence 999999999 999999999999999999776433 444 4 79999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCceeccCCC-----CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI-----GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
++|+ ++++|++++.|+.|++||+.+++....... ...+.++.++ +++++++++.++.|++||+.+++.+..+.
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 9999 999999999999999999998887543222 3578888886 89999999999999999999999999998
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+|. ..|.+++| |+ +++++.||.|++|++. .+. ..| ...|.+++| +++..+
T Consensus 337 ~~~----------~~v~~~~~-~~---l~~~~~dg~i~~w~~~------~~~---~~~------~~~v~~~~~-~~~~~l 386 (615)
T 1pgu_A 337 GHN----------KGITALTV-NP---LISGSYDGRIMEWSSS------SMH---QDH------SNLIVSLDN-SKAQEY 386 (615)
T ss_dssp CCS----------SCEEEEET-TT---TEEEETTSCEEETTTT------EEE---CCC------CSCEEEEEC-CSTTCC
T ss_pred CCC----------CCEEEEEe-cC---cEEECCCCeEEEEEch------hhc---Ccc------cCceEEEEE-CCCcEE
Confidence 877 78999999 88 9999999999999987 111 222 667888888 666777
Q ss_pred EEEeeeccccCCCceeEEEEEEecCC----------------------------------CceeEEEEEeecCCCCCceE
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQ----------------------------------NKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~----------------------------------~~~~~~~~~~~~~h~~~~v~ 559 (762)
++++ .|+.+++|++.+. +....+ .| ...+.
T Consensus 387 ~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~ 450 (615)
T 1pgu_A 387 SSIS---------WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV------RL-NSPGS 450 (615)
T ss_dssp EEEE---------TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE------EC-SSCEE
T ss_pred EEEe---------CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec------cc-CCCce
Confidence 7777 6777777776542 222222 25 67899
Q ss_pred EEEEcCCCCeEEEEeC-CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 560 AVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 560 ~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
+++|+ +++|++++. |+.|++||+.++.... .....|...|++++|+|+|++|++++ |+.|++||+.
T Consensus 451 ~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 518 (615)
T 1pgu_A 451 AVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----------DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518 (615)
T ss_dssp EEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----------ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEc--CCEEEEeecCCCeEEEEECCCccccc----------cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence 99999 889999999 9999999998875531 12346889999999999999999998 9999999999
Q ss_pred CCeEEEEecc-ccCceeEEEEeC----------CCCEEEEEEcCCCCeEEEEECCCC-ceeeEEEEe
Q 040987 638 RNVLVAVIGE-TLTPIMNMSFVG----------SSEYLVATSWGSKPQLSVWNMSKL-SISWSYLLH 692 (762)
Q Consensus 638 ~~~~~~~l~~-~~~~v~~~~~s~----------dg~~l~s~~~d~~~~v~vwd~~~~-~~~~~~~~~ 692 (762)
+++++..+.+ |...|.+++|+| ++++|++++.|+. |++||+.++ +....+..|
T Consensus 519 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~h 583 (615)
T 1pgu_A 519 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN--IFIYSVKRPMKIIKALNAH 583 (615)
T ss_dssp TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC--EEEEESSCTTCCEEETTSS
T ss_pred CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCc--EEEEECCCCceechhhhcC
Confidence 9999999988 999999999999 9999999999998 999999998 555554444
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-55 Score=502.69 Aligned_cols=579 Identities=10% Similarity=0.030 Sum_probs=410.2
Q ss_pred EEEEeecCCcceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeee
Q 040987 32 HILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL 110 (762)
Q Consensus 32 ~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l 110 (762)
....+.+|. +.++|+|+.||.|++|+..+.+......|...|.+ ++|+| |++||+++ |++|+|||+++++++.++
T Consensus 20 V~~lafspd--g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~-l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 20 PIAAAFDFT--QNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKE-MRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp EEEEEEETT--TTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEE-EEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred cEEEEECCC--CCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEE-EEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence 344555665 56999999999999999998887777789999997 99999 88999999 799999999999999998
Q ss_pred cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEE------------Eecc-ceEEEeecccccCC
Q 040987 111 EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI------------DVKF-SIFSMVIPSLLRQP 177 (762)
Q Consensus 111 ~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~------------~~~~-~v~~~~~~~~~~~~ 177 (762)
. |.+.|++++|+|++ .+|++|+.||+|++||+.++++. .+ ..|. +|.+++|
T Consensus 96 ~-~~~~V~~v~~sp~g-------~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~------- 159 (902)
T 2oaj_A 96 F-VPGKITSIDTDASL-------DWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQW------- 159 (902)
T ss_dssp E-CSSCEEEEECCTTC-------SEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEE-------
T ss_pred c-CCCCEEEEEECCCC-------CEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEE-------
Confidence 6 67899999999999 78999999999999999988764 22 1222 4555544
Q ss_pred cccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee-----------------ccCCCceE
Q 040987 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL-----------------AEMKEPQV 240 (762)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~v~~ 240 (762)
.+.+. ..+ ++|+.|+.| +||+++++.++.... .|...|.+
T Consensus 160 -------------sp~~~-~~l--------~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 160 -------------NPRDI-GTV--------LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp -------------ETTEE-EEE--------EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred -------------ccCCC-CEE--------EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 22110 011 567899999 999999887733221 23578999
Q ss_pred EEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeee--ee-------------ccCcCeEEEEEc----CCC-cEEEEe
Q 040987 241 ITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKI--TL-------------HHTKKLTVLAFH----PTQ-RIVAAG 299 (762)
Q Consensus 241 ~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~--~~-------------~~~~~v~~~~~s----p~~-~~l~~~ 299 (762)
++|+|||++||++ .|+.|++||+.+++.. ..+.+ .. .|...|.+++|+ |++ .+|++|
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~--~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMI--MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCEE--EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEE--EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence 9999999999855 7999999999987753 11011 01 135579999995 544 567777
Q ss_pred ecC-----CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccccceeEEEEec----------
Q 040987 300 DVT-----GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSVLIFSS---------- 363 (762)
Q Consensus 300 ~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~---------- 363 (762)
+.+ +.+.+|++.....+.......... .....+....+. .|...|.++.+.+
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~ 362 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKN------------YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCH 362 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH------------HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTB
T ss_pred CCCCCCCCceEEEEecCCCCCccccchhhhhh------------hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCC
Confidence 665 378888852110000000000000 000001122222 3567788888755
Q ss_pred CCCEEEEEecCCeEEEEecCCCceec--------cCCCCCC----------------------------------eEEEE
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKF--------LPRIGSP----------------------------------LLYFT 401 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~--------~~~~~~~----------------------------------v~~~~ 401 (762)
+...+++++.|++|++||+.++.... +..+... +..++
T Consensus 363 d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~ 442 (902)
T 2oaj_A 363 NPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL 442 (902)
T ss_dssp SCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC
T ss_pred CceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc
Confidence 34478888999999999997764321 1222233 33455
Q ss_pred eCCCCCeEEEEecCCcEEEEEcCCceEE--EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC
Q 040987 402 ESPDPSLSSISCADNQVHLLKMPSMEII--RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 402 ~s~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
|+|++++|++++.|++|++||+.++... ..+.... .......|...|.+++|+||+++||+++.||+|++||+.+++
T Consensus 443 ~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l-~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 443 PAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNL-SRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp CCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEH-HHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred ccccCcEEEEecCCCcEEEEECCCccccCCceEEeec-hhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 6799999999999999999999876421 0010000 000001234789999999999999999999999999998763
Q ss_pred cee-----------------------------------------eEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 480 GIS-----------------------------------------EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 480 ~~~-----------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
... ...... ..|...|++++|+||| +||+++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l------~~h~~~V~svafSpdG-~lAsgs- 593 (902)
T 2oaj_A 522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV------HANKGKTSAINNSNIG-FVGIAY- 593 (902)
T ss_dssp C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE------CCCSCSEEEEEECBTS-EEEEEE-
T ss_pred ccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE------EcCCCcEEEEEecCCc-EEEEEe-
Confidence 210 001111 2247889999999999 999999
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeec-CCCCCceEEEEEc-----CCC---CeEEEEeCCCcEEEEEc---cc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE-PHRDAGISAVAFH-----PNR---RAAVSSSYGGDFKVWIC---ND 586 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~h~~~~v~~~~~s-----pd~---~~l~~~~~dg~i~iwd~---~~ 586 (762)
.|++|++||+++...+.......+. +| ...|++++|+ ||| ++|++++.|++|++||+ .+
T Consensus 594 --------~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~ 664 (902)
T 2oaj_A 594 --------AAGSLMLIDRRGPAIIYMENIREISGAQ-SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASG 664 (902)
T ss_dssp --------TTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGG
T ss_pred --------CCCcEEEEECCCCeEEEEeehhHhcccc-ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCC
Confidence 8999999998876554321111233 78 8999999999 885 89999999999999999 66
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEE-Ec----------------------CCCcEEEEEcCCeEEEEeCCCCeEEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAA-FS----------------------ADGSVLAVAAETVITLWDPDRNVLVA 643 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s----------------------~dg~~la~~~d~~i~iwd~~~~~~~~ 643 (762)
++....+. .+.. ..+...|..++ |+ ++|.+|+++ +..|+||++.++++..
T Consensus 665 g~~~~~~~-----~~~~-~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~ 737 (902)
T 2oaj_A 665 GKFDVQLM-----DITN-VTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTH 737 (902)
T ss_dssp GCEEEEEE-----EEEE-CCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEE
T ss_pred CcEEEEec-----Ccee-cCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCcccccee
Confidence 66544432 1111 11345666665 55 556555555 8899999999999988
Q ss_pred EeccccCceeEE---E------EeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 644 VIGETLTPIMNM---S------FVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 644 ~l~~~~~~v~~~---~------~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
....|...+.++ . |++++..|++.+.||. |++|++.+++.+..+..+..
T Consensus 738 k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~--i~~~s~p~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 738 KGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGH--LRVFTIPDFKEQMSEHIPFP 795 (902)
T ss_dssp EECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSE--EEEEETTTCCEEEEEECSSC
T ss_pred eEcccceeeeEEEEEEeccccccccCceEEEEEeCCCc--EEEEECcchHHHhhccCCcc
Confidence 776676666666 5 7899999999999998 99999999999988887443
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-55 Score=501.37 Aligned_cols=544 Identities=12% Similarity=0.084 Sum_probs=393.2
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCe
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGT 144 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~ 144 (762)
....||.+.|.+ ++|+|||++||+|+ ||.|+|||..+++.+..+. |...|.+++|+| + .+|++++.|++
T Consensus 11 ~~~~gh~~~V~~-lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g-------~~L~S~s~D~~ 80 (902)
T 2oaj_A 11 TNKYGMSSKPIA-AAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-G-------IYLVVINAKDT 80 (902)
T ss_dssp EEEEECSSCEEE-EEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-T-------TEEEEEETTCE
T ss_pred ccccCCCCCcEE-EEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-C-------CEEEEEECcCe
Confidence 345699999997 99999999999999 7999999998888777664 788999999999 7 68899999999
Q ss_pred EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 145 IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
|++||+.+++++..+..+..+.+++| .+++.. + ++|+.||.|++||++++
T Consensus 81 v~lWd~~~~~~~~~~~~~~~V~~v~~--------sp~g~~---l-------------------~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVFVPGKITSIDT--------DASLDW---M-------------------LIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp EEEEETTTCSEEEEEECSSCEEEEEC--------CTTCSE---E-------------------EEEETTSCEEEEETTTT
T ss_pred EEEEECCCCcEEEEEcCCCCEEEEEE--------CCCCCE---E-------------------EEEcCCCcEEEEECCCC
Confidence 99999999999999986668888877 334332 1 66789999999999988
Q ss_pred cccc----------eeeeccCCCceEEEECCCC-CEEEE-EeCCeEEEEEccCchhhhheeeeeee--------------
Q 040987 225 RLAG----------GVTLAEMKEPQVITISSSG-KYFGI-RKQRKLLIWKVPDVEAERVVMRKITL-------------- 278 (762)
Q Consensus 225 ~~~~----------~~~~~~~~~v~~~~~spdg-~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~-------------- 278 (762)
+... ....+|.+.|.+++|+|++ ..|++ +.|+.| +||+.+++.. ..+.
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~-----~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK-----QSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE-----EEECCCBCTTCCCSTTCC
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE-----EEEecccCCcCCCccccc
Confidence 7531 1235688999999999964 56664 478999 9999987653 2222
Q ss_pred ----ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 279 ----HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 279 ----~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
.|...|.+++|+|+|++||+++.||.|++||+.+++.+........ ..... ..... ..-..|..
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~------~~~~~-----~~~~~-~~~~~~~~ 272 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFET------EINVP-----QPDYI-RDSSTNAA 272 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCS------CTTSC-----CTTCC-CCCSSCCC
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccc------ccCCC-----CCcCC-CCCccccC
Confidence 2457899999999999999999999999999988765431000000 00000 00000 00002456
Q ss_pred ceeEEEEec----CC-CEEEEEecC-----CeEEEEecC------------------CCcee--ccCCCCCCeEEEEeCC
Q 040987 355 EVSVLIFSS----DG-AYLYSGGKE-----GVLVVWQLD------------------TGKKK--FLPRIGSPLLYFTESP 404 (762)
Q Consensus 355 ~v~~~~~s~----~g-~~l~s~~~d-----g~i~~wd~~------------------~~~~~--~~~~~~~~v~~~~~s~ 404 (762)
.|.+++|++ ++ ..|++++.+ ..+.+|++. +.+.. ....+...+..+.+.+
T Consensus 273 ~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 352 (902)
T 2oaj_A 273 KISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIP 352 (902)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECC
T ss_pred CeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECC
Confidence 799999964 43 467777665 378899853 11222 1224567888888765
Q ss_pred ----------CCCeEEEEecCCcEEEEEcCCceEEEE-------EccCCC------------------------CCCCCC
Q 040987 405 ----------DPSLSSISCADNQVHLLKMPSMEIIRS-------ISGIKL------------------------PCPLPE 443 (762)
Q Consensus 405 ----------~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~~~------------------------~~~~~~ 443 (762)
+...+++++.|+.+++|++.++..... +..|.. ......
T Consensus 353 ~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~ 432 (902)
T 2oaj_A 353 RQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLK 432 (902)
T ss_dssp SSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCC
T ss_pred CCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCccc
Confidence 344788888999999999977644322 111110 000112
Q ss_pred cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee--eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 444 EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS--EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
.|...+..++|+|++++|++++.|++|++||+.++.... .+..... ......|...|.+++|+|||++||+++
T Consensus 433 G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~-~~~~~~h~~~V~svafspdg~~LAsgs---- 507 (902)
T 2oaj_A 433 GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS-RTLNKAKELAVDKISFAAETLELAVSI---- 507 (902)
T ss_dssp CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH-HHTTCSSSCCEEEEEEETTTTEEEEEE----
T ss_pred CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech-hhcCCCCCCceeEEEecCCCCeEEEEe----
Confidence 233456677889999999999999999999998874321 1111110 000012367899999999999999999
Q ss_pred ccCCCceeEEEEEEecCCCcee---------------------------------------E-EEEEeecCCCCCceEEE
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEF---------------------------------------T-LSTIVYEPHRDAGISAV 561 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~---------------------------------------~-~~~~~~~~h~~~~v~~~ 561 (762)
.|++|++|++.+++... . .....+.+| .+.|+++
T Consensus 508 -----~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h-~~~V~sv 581 (902)
T 2oaj_A 508 -----ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN-KGKTSAI 581 (902)
T ss_dssp -----TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC-SCSEEEE
T ss_pred -----cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC-CCcEEEE
Confidence 89999999998763200 0 011235678 9999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc-cCCCCeEEEEEc-----CCC---cEEEEEc-CCeE
Q 040987 562 AFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS-YKKKAMTAAAFS-----ADG---SVLAVAA-ETVI 631 (762)
Q Consensus 562 ~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s-----~dg---~~la~~~-d~~i 631 (762)
+||||| +||+|+.|++|++||+.++..+... .+ .... +|...|++++|| ||| ++|++|+ |++|
T Consensus 582 afSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~-----~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 582 NNSNIG-FVGIAYAAGSLMLIDRRGPAIIYME-----NI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp EECBTS-EEEEEETTSEEEEEETTTTEEEEEE-----EG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred EecCCc-EEEEEeCCCcEEEEECCCCeEEEEe-----eh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 999999 9999999999999999876553211 01 1232 688999999999 886 8999998 9999
Q ss_pred EEEeC---CCCeEEEEecccc-----CceeEEE-Ee----------------------CCCCEEEEEEcCCCCeEEEEEC
Q 040987 632 TLWDP---DRNVLVAVIGETL-----TPIMNMS-FV----------------------GSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 632 ~iwd~---~~~~~~~~l~~~~-----~~v~~~~-~s----------------------~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
++||+ .+|++...+.+|. ++|.+++ |+ +++..|+++ +.. |++|++
T Consensus 655 ~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~--ir~~~~ 730 (902)
T 2oaj_A 655 ITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDD--IRLITL 730 (902)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSE--EEEECT
T ss_pred EEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccc--eEEEeC
Confidence 99999 8899988888774 6788777 76 455555554 544 999999
Q ss_pred CCCceeeEE
Q 040987 681 SKLSISWSY 689 (762)
Q Consensus 681 ~~~~~~~~~ 689 (762)
.+++.....
T Consensus 731 ~~~k~~~k~ 739 (902)
T 2oaj_A 731 GKSKSTHKG 739 (902)
T ss_dssp TCCCEEEEE
T ss_pred ccccceeeE
Confidence 998776433
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-49 Score=456.15 Aligned_cols=462 Identities=15% Similarity=0.142 Sum_probs=375.2
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
....+.+|.+.|.+ ++|||||++||+++ +|.|+|||+.+++.+.++.+|.+.|++++|+|++ .+|++++.|
T Consensus 5 ~~~~~~~h~~~v~~-i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~d 76 (814)
T 3mkq_A 5 IKKTFSNRSDRVKG-IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK-------NWIIVGSDD 76 (814)
T ss_dssp CEEEEEEECSCEEE-EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-------TEEEEEETT
T ss_pred cceeeecCCCceEE-EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC-------CEEEEEeCC
Confidence 34567999999998 99999999999999 7999999999999999999999999999999999 688999999
Q ss_pred CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
++|++||+.+++.+..+..|. .+.+++| .+++.. + ++++.||.|++||+
T Consensus 77 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~---l-------------------~~~~~dg~i~vw~~ 126 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAV--------HPTKPY---V-------------------LSGSDDLTVKLWNW 126 (814)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEE--------CSSSSE---E-------------------EEEETTSEEEEEEG
T ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEE--------eCCCCE---E-------------------EEEcCCCEEEEEEC
Confidence 999999999999999999887 7888877 333332 1 56789999999999
Q ss_pred CCccccceeeeccCCCceEEEECC-CCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--CCcEEE
Q 040987 222 TESRLAGGVTLAEMKEPQVITISS-SGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--TQRIVA 297 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~ 297 (762)
.++........+|...|.+++|+| +++.|++ +.|+.|++||+.++... ......+...+.+++|+| ++++|+
T Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS----EEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce----eEEecCCCCCEEEEEEEECCCCCEEE
Confidence 998555577888999999999999 8888875 47899999999887643 233445558999999999 999999
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
+++.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|
T Consensus 203 ~~~~dg~i~~~d~~~~~------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v 252 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKS------------------------------CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (814)
T ss_dssp EECTTSEEEEEETTTTE------------------------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred EEeCCCEEEEEECCCCc------------------------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999987664 346778899999999999999999999999999
Q ss_pred EEEecCCCcee-ccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 378 VVWQLDTGKKK-FLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 378 ~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
++||+.+++.. .+..+...+.+++|+|++.. +++++.++.+.+|++... ...+.++
T Consensus 253 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 310 (814)
T 3mkq_A 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND----------------------EPTLSLD 310 (814)
T ss_dssp EEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC----------------------SCCEEEC
T ss_pred EEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC----------------------CceeEEC
Confidence 99999998875 45566789999999999874 355556788899987532 2457788
Q ss_pred CCCCEEEEeecCce---EEE------EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 456 HDGGLVALRAENYC---IHF------YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 456 ~~~~~l~~~~~dg~---i~i------~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
|+++.+++++.+.. +.. |++..+............ +...+.+++|+|+|+++++++
T Consensus 311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~spdg~~la~~~--------- 375 (814)
T 3mkq_A 311 PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS------VDVFPQSLAHSPNGRFVTVVG--------- 375 (814)
T ss_dssp SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECC------CSSCCSEEEECTTSSEEEEEE---------
T ss_pred CCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCC------CccCCceeEECCCCCEEEEec---------
Confidence 99988888765532 221 222222222111111111 145688999999999999984
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
++.+.+|++..... .+ .+.+.+++|+|+++++++++.++.+++|+.. .+
T Consensus 376 -~~~~~i~~~~~~~~----------~~-~~~i~~~~~spdg~~la~~~~~g~v~l~~~~-------------------~~ 424 (814)
T 3mkq_A 376 -DGEYVIYTALAWRN----------KA-FGKCQDFVWGPDSNSYALIDETGQIKYYKNF-------------------KE 424 (814)
T ss_dssp -TTEEEEEETTTTEE----------EE-EEECSEEEECTTSSCEEEECTTCCEEEEETT-------------------EE
T ss_pred -CCEEEEEECccccc----------cC-CCceEEEEEeCCCCeEEEEeCCCcEEEEECC-------------------CC
Confidence 57899999764321 12 4578899999999999999999999999632 23
Q ss_pred CCCCeEEEEEcCCC---cEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEE
Q 040987 607 KKKAMTAAAFSADG---SVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 607 ~~~~i~~~~~s~dg---~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~ 668 (762)
|...+.+++|+||| ++|++++ |+.|++||+.+++++..+.+|.. .+.|+|||++|++++
T Consensus 425 ~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~ 487 (814)
T 3mkq_A 425 VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVN 487 (814)
T ss_dssp CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEE
T ss_pred ccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEE
Confidence 56678889999998 5677766 99999999999999999987764 899999999999993
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-44 Score=414.37 Aligned_cols=512 Identities=14% Similarity=0.180 Sum_probs=386.9
Q ss_pred EEeecCCcceeEEEEecCCCeEEEEecCCcce-eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeec
Q 040987 34 LIERKPRSRSFIFAVARSSGLCRTAEYPAVNS-KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE 111 (762)
Q Consensus 34 ~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~-~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~ 111 (762)
....+|. +.++|+|+.||.|++||+.+++. ..+.+|...|.+ ++|+|||++||+++ +|.|+|||+.+++.+.++.
T Consensus 18 ~i~~sp~--~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 94 (814)
T 3mkq_A 18 GIDFHPT--EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA-GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94 (814)
T ss_dssp EEEECSS--SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE-EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCC--CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 3344554 67999999999999999987655 466889999997 99999999999999 6999999999999999999
Q ss_pred CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc-ceEEEEEecc-ceEEEeecccccCCccc-CCCCCceE
Q 040987 112 GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP-ELLKTIDVKF-SIFSMVIPSLLRQPAQS-DEKPPKLF 188 (762)
Q Consensus 112 ~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~~~~-~~~~~~~~ 188 (762)
+|.+.|++++|+|++ .+|++++.|++|++||+.++ .....+..|. ++.+++| .+ ++.
T Consensus 95 ~~~~~v~~~~~s~~~-------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~--------~p~~~~----- 154 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTK-------PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF--------NPKDPS----- 154 (814)
T ss_dssp CCSSCEEEEEECSSS-------SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE--------ETTEEE-----
T ss_pred cCCCCEEEEEEeCCC-------CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE--------EcCCCC-----
Confidence 999999999999999 68889999999999999987 6777777776 7777765 11 111
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC--CCCEEEEE-eCCeEEEEEccC
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS--SGKYFGIR-KQRKLLIWKVPD 265 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~-~~~~i~iwd~~~ 265 (762)
.+ ++++.||.|++||+.++.........+...+.+++|+| ++++|+++ .++.|++||+.+
T Consensus 155 ---------~l--------~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 155 ---------TF--------ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp ---------EE--------EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred ---------EE--------EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 11 56789999999999998888666666669999999999 99999865 789999999998
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADL 345 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (762)
++.. ....+|...|.+++|+|++++|++++.||.|++||+.+++ .
T Consensus 218 ~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~------------------------------~ 262 (814)
T 3mkq_A 218 KSCV-----ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK------------------------------V 262 (814)
T ss_dssp TEEE-----EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS------------------------------E
T ss_pred CcEE-----EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------------------------E
Confidence 7754 5667899999999999999999999999999999997664 3
Q ss_pred ceeeeccccceeEEEEecCCCE-EEEEecCCeEEEEecCCCce----------ec-------------------------
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKK----------KF------------------------- 389 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~----------~~------------------------- 389 (762)
...+..|...+.+++|+|++.. +++++.++.+.+|++..... ..
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD 342 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence 4567778889999999999873 24444567788888754321 00
Q ss_pred ---------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 390 ---------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 390 ---------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
...+...+.+++|+|+|+++++++ ++.+.+|++........ +.+.+++|+|++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~---------------~~i~~~~~spdg~~ 406 (814)
T 3mkq_A 343 EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAF---------------GKCQDFVWGPDSNS 406 (814)
T ss_dssp SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEE---------------EECSEEEECTTSSC
T ss_pred ccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCC---------------CceEEEEEeCCCCe
Confidence 012334578999999999999987 89999999875543321 56789999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC---CeEEEEeeeccccCCCceeEEEEEEec
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG---SLMSTVDIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~ 537 (762)
+++++.++.+++|+...+ + ...+.+++|+|++ .+|++++ .++.|++||+.
T Consensus 407 la~~~~~g~v~l~~~~~~------------~------~~~v~~~~~s~dg~~~~~l~~~~---------~d~~v~~~d~~ 459 (814)
T 3mkq_A 407 YALIDETGQIKYYKNFKE------------V------TSWSVPMHSAIDRLFSGALLGVK---------SDGFVYFFDWD 459 (814)
T ss_dssp EEEECTTCCEEEEETTEE------------C------TTCCCCCSSCCCEEECSSSEEEE---------ETTEEEEECTT
T ss_pred EEEEeCCCcEEEEECCCC------------c------cceEEcCCcCccceecceEEEEe---------cCCEEEEEECC
Confidence 999999999999963211 1 4457788899998 6888887 78999999999
Q ss_pred CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE------eCCCcEEEEEccccccccccc----------CCceeee
Q 040987 538 TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS------SYGGDFKVWICNDELQQKDLQ----------SSGWSCH 601 (762)
Q Consensus 538 ~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~------~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~ 601 (762)
+++....+ ..| . ..++|+|||++|+++ +.++ +.+|..........+. .......
T Consensus 460 ~~~~~~~~-----~~~-~---~~v~~s~dg~~la~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (814)
T 3mkq_A 460 NGTLVRRI-----DVN-A---KDVIWSDNGELVMIVNTNSNGDEAS-GYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVL 529 (814)
T ss_dssp TCCEEEEE-----SSC-E---EEEEECTTSSEEEEEECCCSSCSCS-EEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEE
T ss_pred cCcEEEEE-----ecC-C---CEEEEcCCCCEEEEEEcCcccCCce-EEEEEechHHhhhhhhccCCccccchhhheeee
Confidence 98776655 334 2 389999999999999 5554 4444332211111100 0001110
Q ss_pred eecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 602 AVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 602 ~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
. .....+.+..|. +..++..+ .+.+..+- .++ ...+.....++..+.|.+++..++....++. +..|++
T Consensus 530 ~---~~~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~l 599 (814)
T 3mkq_A 530 Y---ELSESITSGKWV--GDVFIFTTATNRLNYFV--GGK-TYNLAHYTKEMYLLGYLARDNKVYLADREVH--VYGYEI 599 (814)
T ss_dssp E---EECSCCSEEEEE--TTEEEEECTTSEEEEEE--TTE-EEEEEECSSCCEEEEEEGGGTEEEEECTTCC--EEEEEC
T ss_pred e---EeccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCe-eEEEEECCccEEEEEEEecCCEEEEEcCCCC--EEEEEE
Confidence 0 112345566664 34444444 44554432 222 2333445566777888899999999988887 999997
Q ss_pred CCC
Q 040987 681 SKL 683 (762)
Q Consensus 681 ~~~ 683 (762)
...
T Consensus 600 ~~~ 602 (814)
T 3mkq_A 600 SLE 602 (814)
T ss_dssp CHH
T ss_pred CcH
Confidence 643
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=347.88 Aligned_cols=289 Identities=15% Similarity=0.217 Sum_probs=257.6
Q ss_pred cceeeeccccceeEEEEecC----CCEEEEEecCCeEEEEecCCCcee---ccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 345 LCTTWHWHPSEVSVLIFSSD----GAYLYSGGKEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~----g~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
....+.+|.+.|++++|+|+ +.+|++|+.|++|++|++..++.. .+..|...|.++++++++.++++++.|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 44667789999999999874 578999999999999999877642 46788899999999999999999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
|++||+.+++.+..+..+. ..+.+++|+|++++|++++.++.+++|++.+++....+...
T Consensus 104 i~lWd~~~~~~~~~~~~~~----------~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~---------- 163 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGP----------VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR---------- 163 (321)
T ss_dssp EEEEETTTTEEEEEEECCT----------TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS----------
T ss_pred EEEEECCCCCEEEEEeCCC----------ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC----------
Confidence 9999999999999988776 57789999999999999999999999999988766554432
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
...+.+++|+|+|++|++++ .|+.|++||+.+++....+ .+| ...|.+++|+|++++|++++.|+
T Consensus 164 ~~~v~~~~~spdg~~lasg~---------~dg~i~iwd~~~~~~~~~~-----~~h-~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGA---------IDGIINIFDIATGKLLHTL-----EGH-AMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEE-----CCC-SSCCCEEEECTTSCEEEEECTTS
T ss_pred CceEEEEEECCCCCEEEEEc---------CCCeEEEEECCCCcEEEEE-----ccc-CCceeEEEEcCCCCEEEEEcCCC
Confidence 55699999999999999999 8899999999988765554 678 88999999999999999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMS 656 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 656 (762)
.|++||+.++.....+ .+|...|.+++|+|++++|++++ |++|++||+.+++++..+.+|...|.+++
T Consensus 229 ~i~iwd~~~~~~~~~~-----------~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~ 297 (321)
T 3ow8_A 229 YIKIYDVQHANLAGTL-----------SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297 (321)
T ss_dssp CEEEEETTTCCEEEEE-----------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred eEEEEECCCcceeEEE-----------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE
Confidence 9999999877655443 46889999999999999999998 99999999999999999999999999999
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
|+|++++|++++.|+. |++||..
T Consensus 298 ~s~~g~~l~s~~~d~~--i~vwd~p 320 (321)
T 3ow8_A 298 YNGNGSKIVSVGDDQE--IHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEETTCC--EEEEECC
T ss_pred ECCCCCEEEEEeCCCe--EEEEeCC
Confidence 9999999999999998 9999963
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-42 Score=353.07 Aligned_cols=291 Identities=13% Similarity=0.179 Sum_probs=258.0
Q ss_pred cceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 63 VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 63 ~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
.....+.+|.+.|.+ ++|+|||++||+++ |++|+|||+.+++.+..+..|...|.+++|+|++ .+|++++.
T Consensus 46 ~~~~~l~gH~~~v~~-~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~s~~~ 117 (340)
T 1got_B 46 RTRRTLRGHLAKIYA-MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-------NYVACGGL 117 (340)
T ss_dssp CEEEEECCCSSCEEE-EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-------SEEEEEET
T ss_pred hhheeecCCCCceEE-EEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-------CEEEEEeC
Confidence 455678999999997 99999999999999 7999999999999999999999999999999999 78999999
Q ss_pred CCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 142 DGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 142 d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
|+.|++||+.+++....+.
T Consensus 118 d~~v~iw~~~~~~~~~~~~------------------------------------------------------------- 136 (340)
T 1got_B 118 DNICSIYNLKTREGNVRVS------------------------------------------------------------- 136 (340)
T ss_dssp TCEEEEEETTTCSBSCEEE-------------------------------------------------------------
T ss_pred CCeEEEEECccCCCcceeE-------------------------------------------------------------
Confidence 9999999998653211000
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV 301 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 301 (762)
....+|.+.+.++.|++++++++++.|+.|++||+.+++.. ..+.+|...|.+++|+|++++|++|+.
T Consensus 137 -------~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 137 -------RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT-----TTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp -------EEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -------EEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEE-----EEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 23456788899999999998777889999999999988754 567789999999999999999999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
||.|++||+.++. +...+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 205 d~~v~~wd~~~~~------------------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 205 DASAKLWDVREGM------------------------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254 (340)
T ss_dssp TSCEEEEETTTCS------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEECCCCe------------------------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 9999999997653 3467888999999999999999999999999999999
Q ss_pred cCCCceeccCCC---CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 382 LDTGKKKFLPRI---GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 382 ~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
+++++......+ ...+.+++|+|+|++|++++.|+.|++||+.+++.+..+.+|. +.|.+++|+|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~----------~~v~~~~~s~dg 324 (340)
T 1got_B 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD----------NRVSCLGVTDDG 324 (340)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS----------SCEEEEEECTTS
T ss_pred CCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC----------CcEEEEEEcCCC
Confidence 998876543333 3479999999999999999999999999999999999999887 789999999999
Q ss_pred CEEEEeecCceEEEEE
Q 040987 459 GLVALRAENYCIHFYS 474 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d 474 (762)
++|++++.|+.|++||
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 9999999999999996
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-42 Score=362.63 Aligned_cols=294 Identities=15% Similarity=0.221 Sum_probs=262.1
Q ss_pred EecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeE
Q 040987 58 AEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 58 ~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
|.........+.+|.+.|.+ ++|+|++++||+|+ |++|+|||+.+++.++++.+|...|++++|+|++ .+|
T Consensus 94 ~~~~~~~~~~l~gh~~~V~~-~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-------~~l 165 (410)
T 1vyh_C 94 WIPRPPEKYALSGHRSPVTR-VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-------KLL 165 (410)
T ss_dssp CCCCSSCSCEEECCSSCEEE-EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-------SEE
T ss_pred cccCCCceEeecccCCcEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-------CEE
Confidence 43333445678999999998 99999999999999 7999999999999999999999999999999999 689
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++|+.|++|++||+.++++++++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~~~--------------------------------------------------------- 188 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIRTM--------------------------------------------------------- 188 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEECC---------------------------------------------------------
T ss_pred EEEeCCCeEEEEeCCCCceeEEE---------------------------------------------------------
Confidence 99999999999999887765433
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
.+|...|.+++|+|++++|++ +.|+.|++||+.++... ..+.+|...|.+++|+|++++
T Consensus 189 ---------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~-----~~~~~h~~~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 189 ---------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-----KTFTGHREWVRMVRPNQDGTL 248 (410)
T ss_dssp ---------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSSE
T ss_pred ---------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-----EEEeCCCccEEEEEECCCCCE
Confidence 346678899999999999985 57999999999998754 667799999999999999999
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-----------
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD----------- 364 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----------- 364 (762)
|++|+.|+.|++||+.+++ +...+.+|...|.+++|+|+
T Consensus 249 l~s~s~D~~v~vwd~~~~~------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 298 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKE------------------------------CKAELREHRHVVECISWAPESSYSSISEATG 298 (410)
T ss_dssp EEEEETTSCEEEEETTTCC------------------------------EEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred EEEEcCCCeEEEEECCCCc------------------------------eeeEecCCCceEEEEEEcCcccccchhhhcc
Confidence 9999999999999997663 34577889999999999986
Q ss_pred ---------CCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 365 ---------GAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 365 ---------g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
|.+|++++.|++|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+
T Consensus 299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~ 378 (410)
T 1vyh_C 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378 (410)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence 678999999999999999998875 4667888999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
|. ..|.+++|+|++.+|++++.|+.|++|+.+
T Consensus 379 h~----------~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 379 HE----------HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CS----------SCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CC----------CcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 87 789999999999999999999999999863
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=344.01 Aligned_cols=285 Identities=19% Similarity=0.276 Sum_probs=252.5
Q ss_pred eeecCcccccCCceeecC----CCEEEEEe-CCEEEEEEcccce--EEeeecCCccceeEEEEeCCCCcccceeeeEEee
Q 040987 67 MIRGGRSYVSSPPAFSND----VKRLLVCT-SNTVSIFSTSTGL--QISSLEGHKAPVTTVIVVPASTPATKILSYCWTA 139 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~d----g~~la~~~-~~~i~iwd~~~~~--~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~ 139 (762)
.+.+|.+.|.+ ++|+|+ +++||+|+ |++|+|||+.+++ ....+.+|...|.+++|++++ .+++++
T Consensus 27 ~~~~H~~~V~~-v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-------~~l~s~ 98 (321)
T 3ow8_A 27 QEQAHDDAIWS-VAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-------PIAASS 98 (321)
T ss_dssp ETTSSSSCEEE-EEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-------SEEEEE
T ss_pred ecccCCCcEEE-EEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-------CEEEEE
Confidence 44689999998 999985 67999999 8999999998775 355789999999999999999 688999
Q ss_pred ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 140 s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+.|++|++||+.+++++..+..
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~---------------------------------------------------------- 120 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDA---------------------------------------------------------- 120 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEEC----------------------------------------------------------
T ss_pred eCCCcEEEEECCCCCEEEEEeC----------------------------------------------------------
Confidence 9999999999999987765542
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEE
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAA 298 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 298 (762)
+...+.+++|+|++++|+++ .++.+++|++.+++.. .....|...|.+++|+|++++|++
T Consensus 121 --------------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~-----~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 121 --------------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE-----YSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp --------------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-----EEEECSSSCEEEEEECTTSSEEEE
T ss_pred --------------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-----EEecCCCceEEEEEECCCCCEEEE
Confidence 34456778999999999966 6899999999988754 456678889999999999999999
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEE
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 182 g~~dg~i~iwd~~~~~------------------------------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 182 GAIDGIINIFDIATGK------------------------------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp EETTSCEEEEETTTTE------------------------------EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred EcCCCeEEEEECCCCc------------------------------EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 9999999999997764 3467788999999999999999999999999999
Q ss_pred EEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 379 VWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 379 ~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+||+++++.. .+..|...|.+++|+|++++|++++.|+.|++||+.+++++..+.+|. ..|.+++|+|+
T Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~----------~~v~~v~~s~~ 301 (321)
T 3ow8_A 232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ----------DQVWGVKYNGN 301 (321)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTT
T ss_pred EEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC----------CcEEEEEECCC
Confidence 9999988775 467788899999999999999999999999999999999999999887 78999999999
Q ss_pred CCEEEEeecCceEEEEEcC
Q 040987 458 GGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~ 476 (762)
+++|++++.|+.|++||..
T Consensus 302 g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 302 GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999963
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.7e-42 Score=357.81 Aligned_cols=288 Identities=17% Similarity=0.296 Sum_probs=261.4
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
...+.+|...|++++|+|++++|++++.|++|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 4678899999999999999999999999999999999998874 567788999999999999999999999999999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.++..+..+.. | ...+.++
T Consensus 181 ~~~~~~~~~~h~----------~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----h------~~~v~~~ 240 (410)
T 1vyh_C 181 GFECIRTMHGHD----------HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG----H------REWVRMV 240 (410)
T ss_dssp SSCEEECCCCCS----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC----C------SSCEEEE
T ss_pred CCceeEEEcCCC----------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC----C------CccEEEE
Confidence 999999998887 7899999999999999999999999999999877665542 2 6679999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC------------------
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN------------------ 566 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd------------------ 566 (762)
.++|++++|++++ .|+.|++||+.+++....+ .+| ...|.+++|+|+
T Consensus 241 ~~~~~g~~l~s~s---------~D~~v~vwd~~~~~~~~~~-----~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 241 RPNQDGTLIASCS---------NDQTVRVWVVATKECKAEL-----REH-RHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp EECTTSSEEEEEE---------TTSCEEEEETTTCCEEEEE-----CCC-SSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred EECCCCCEEEEEc---------CCCeEEEEECCCCceeeEe-----cCC-CceEEEEEEcCcccccchhhhccccccccC
Confidence 9999999999999 8999999999988766554 578 889999999996
Q ss_pred --CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE
Q 040987 567 --RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA 643 (762)
Q Consensus 567 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~ 643 (762)
+.+|++++.|+.|++||+.++.....+ .+|...|++++|+|+|++|++++ |+.|++||+.+++++.
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-----------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTL-----------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEE-----------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEE-----------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 668999999999999999987765443 46889999999999999999998 9999999999999999
Q ss_pred EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 644 VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.+.+|...|++++|+|++.+|++++.|+. |++|++.
T Consensus 375 ~~~~h~~~v~~l~~~~~~~~l~sgs~D~~--i~vW~~r 410 (410)
T 1vyh_C 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQT--VKVWECR 410 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTSE--EEEEC--
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEeCCCc--EEEEeCC
Confidence 99999999999999999999999999998 9999863
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.3e-41 Score=342.88 Aligned_cols=289 Identities=18% Similarity=0.277 Sum_probs=254.6
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
.....+.+|...|.+++|+|++++|++++.|++|++||..+++.. .+..+...+.+++|+|+++++++++.|+.+++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 345778999999999999999999999999999999999988774 4566788999999999999999999999999999
Q ss_pred cCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 423 MPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 423 ~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
+.+. .....+.+|. +.+.++.|++++. +++++.|+.|++||+.+++....+. +| .
T Consensus 126 ~~~~~~~~~~~~~~~~h~----------~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~----~h------~ 184 (340)
T 1got_B 126 LKTREGNVRVSRELAGHT----------GYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT----GH------T 184 (340)
T ss_dssp TTTCSBSCEEEEEEECCS----------SCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC----CC------S
T ss_pred CccCCCcceeEEEecCCC----------ccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc----CC------C
Confidence 9874 4566677776 7889999999875 8899999999999999887655443 22 6
Q ss_pred eeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCc
Q 040987 499 VVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGD 578 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~ 578 (762)
..|.+++|+|+++++++++ .|+.|++||+.++.....+ .+| ...|++++|+|++++|++++.|++
T Consensus 185 ~~v~~~~~~~~~~~l~sg~---------~d~~v~~wd~~~~~~~~~~-----~~h-~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGA---------CDASAKLWDVREGMCRQTF-----TGH-ESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCSEEEEE-----CCC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred CceEEEEECCCCCEEEEEe---------CCCcEEEEECCCCeeEEEE-----cCC-cCCEEEEEEcCCCCEEEEEcCCCc
Confidence 7799999999999999999 8999999999988766554 678 889999999999999999999999
Q ss_pred EEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 579 FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
|++||+.+++....+. ...+...|++++|+|+|++|++|+ |+.|++||+.+++.+..+.+|..+|.+++|
T Consensus 250 v~iwd~~~~~~~~~~~---------~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 320 (340)
T 1got_B 250 CRLFDLRADQELMTYS---------HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320 (340)
T ss_dssp EEEEETTTTEEEEEEC---------CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCCcEEEEEc---------cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEE
Confidence 9999998876554331 112345799999999999999998 999999999999999999999999999999
Q ss_pred eCCCCEEEEEEcCCCCeEEEEE
Q 040987 658 VGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 658 s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+|||++|++++.|+. |++||
T Consensus 321 s~dg~~l~s~s~D~~--i~iWd 340 (340)
T 1got_B 321 TDDGMAVATGSWDSF--LKIWN 340 (340)
T ss_dssp CTTSSCEEEEETTSC--EEEEC
T ss_pred cCCCCEEEEEcCCcc--EEecC
Confidence 999999999999998 99997
No 19
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-41 Score=347.71 Aligned_cols=320 Identities=13% Similarity=0.148 Sum_probs=236.9
Q ss_pred eEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec------CCeEEEEeccC
Q 040987 239 QVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV------TGRILIWRGFG 312 (762)
Q Consensus 239 ~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------dg~v~vw~~~~ 312 (762)
..+.+.+++.++....+.....|+++... ...|...|++++|+|||++||+++. |+.|++|+..+
T Consensus 9 sg~d~g~~~~~~~~~g~~~~~~w~~p~~~---------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~ 79 (357)
T 4g56_B 9 SGVDLGTENLYFQSNGSSKGSAWGRPVTA---------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE 79 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred cCCCCCccceEEecCCCccccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence 34556667777777677888999986543 3479999999999999999999997 77899998765
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--- 389 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--- 389 (762)
+.... .......+|...|.+++|+|+++ +++++.||+|++||+.+++...
T Consensus 80 ~~~~~--------------------------~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~ 132 (357)
T 4g56_B 80 GAPNE--------------------------SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNK 132 (357)
T ss_dssp ---CG--------------------------GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCC
T ss_pred CCcce--------------------------eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEe
Confidence 53221 22345567889999999999985 5567889999999999887532
Q ss_pred --cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeec
Q 040987 390 --LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAE 466 (762)
Q Consensus 390 --~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 466 (762)
...|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|. ..|.+++|+|++. ++++++.
T Consensus 133 ~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~----------~~v~~v~~s~~~~~~~~s~~~ 202 (357)
T 4g56_B 133 FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS----------SEVNCVAACPGKDTIFLSCGE 202 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTCSSCEEEEET
T ss_pred eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC----------CCEEEEEEccCCCceeeeecc
Confidence 34678899999999999999999999999999999999999999887 7899999999875 7889999
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
|+.|++||+++++....+.... +...+.+++|+|++ .+|++++ .|+.|++||+.+++....+
T Consensus 203 dg~v~~wd~~~~~~~~~~~~~~--------~~~~v~~v~~sp~~~~~la~g~---------~d~~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 203 DGRILLWDTRKPKPATRIDFCA--------SDTIPTSVTWHPEKDDTFACGD---------ETGNVSLVNIKNPDSAQTS 265 (357)
T ss_dssp TSCEEECCTTSSSCBCBCCCTT--------CCSCEEEEEECTTSTTEEEEEE---------SSSCEEEEESSCGGGCEEE
T ss_pred CCceEEEECCCCceeeeeeecc--------ccccccchhhhhcccceEEEee---------cccceeEEECCCCcEeEEE
Confidence 9999999999887655443221 15679999999985 5788888 8899999999998876655
Q ss_pred EEEeecCCCCCceEEEEEcCCC-CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC-CCcEE
Q 040987 546 STIVYEPHRDAGISAVAFHPNR-RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVL 623 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l 623 (762)
.+| ...|++++|+|++ ++|++++.|++|+|||+.+++....+ +|...|++++|+| |+++|
T Consensus 266 -----~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~------------~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 266 -----AVH-SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL------------SHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp -----CCC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC------------CCSSCEEEEEECSSSTTEE
T ss_pred -----ecc-ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC------------CCCCCEEEEEEeCCCCCEE
Confidence 578 8899999999987 57999999999999999988765443 5889999999998 89999
Q ss_pred EEEc-CCeEEEEeCCCC
Q 040987 624 AVAA-ETVITLWDPDRN 639 (762)
Q Consensus 624 a~~~-d~~i~iwd~~~~ 639 (762)
++++ |++|++|++.+.
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 9998 999999999764
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-40 Score=333.14 Aligned_cols=290 Identities=14% Similarity=0.180 Sum_probs=250.3
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
...++.+|.+.|.+ ++|+|||++||+++ |+.|+|||+++++.++.+.+|..+|.+++|+|++ .+|++|+.|
T Consensus 5 ~~~~~~~h~~~V~~-~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~s~s~d 76 (304)
T 2ynn_A 5 IKKTFSNRSDRVKG-IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-------NWIIVGSDD 76 (304)
T ss_dssp CEEEEEEECSCEEE-EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-------TEEEEEETT
T ss_pred eEEeecCCCCceEE-EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-------CEEEEECCC
Confidence 35578999999997 99999999999999 7999999999999999999999999999999999 689999999
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
++|++||+.+++++..+.
T Consensus 77 ~~i~vwd~~~~~~~~~~~-------------------------------------------------------------- 94 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDFE-------------------------------------------------------------- 94 (304)
T ss_dssp SEEEEEETTTCCEEEEEE--------------------------------------------------------------
T ss_pred CEEEEEECCCCcEEEEEe--------------------------------------------------------------
Confidence 999999999988766554
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEee
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGD 300 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~ 300 (762)
+|...|.+++|+|++++|+++ .|+.|++||+.++. .....+.+|...|.+++|+| ++.+|++|+
T Consensus 95 ----------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 95 ----------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ----------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT----EEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ----------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc----chhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 356778899999999999854 79999999998764 23356778999999999999 678999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec--CCCEEEEEecCCeEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS--DGAYLYSGGKEGVLV 378 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~i~ 378 (762)
.|+.|++||+...... .....+|...+..+.|+| ++++|++++.|++|+
T Consensus 161 ~D~~v~iwd~~~~~~~-----------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPN-----------------------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp TTSEEEEEETTCSSCS-----------------------------EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred CCCeEEEEECCCCCcc-----------------------------ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 9999999998654321 123345667899999986 778999999999999
Q ss_pred EEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 379 VWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 379 ~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+||+++++.. .+..|...|.+++|+|++++|++++.|+.|++||..+++....+..+. ..+.+++++|+
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----------~~~~~~~~~~~ 281 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL----------ERSWCIATHPT 281 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS----------SSEEEEEECTT
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC----------ccEEEEEECCC
Confidence 9999998875 467788999999999999999999999999999999999999998876 68899999998
Q ss_pred CC--EEEEeecCceEEEEEcCC
Q 040987 458 GG--LVALRAENYCIHFYSLLD 477 (762)
Q Consensus 458 ~~--~l~~~~~dg~i~i~d~~~ 477 (762)
+. ++++++.+| +.+|++..
T Consensus 282 ~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 282 GRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CGGGCEEEEETTE-EEEEECC-
T ss_pred CCceEEEEecCCc-eEEEEecc
Confidence 75 477776655 77887754
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-41 Score=353.95 Aligned_cols=360 Identities=15% Similarity=0.161 Sum_probs=281.3
Q ss_pred eEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc-EEEEeecCCeEEEEec----cCCce------eecccccccc
Q 040987 257 KLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRG----FGDRT------FATNDNKMNL 325 (762)
Q Consensus 257 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~----~~~~~------~~~~~~~~~~ 325 (762)
.+.+|++...... .....|.+.|.+++|+|+++ +||+|+.||.|++|++ .+++. .......
T Consensus 26 ~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--- 97 (425)
T 1r5m_A 26 IDSSDDLDGFVKI-----LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP--- 97 (425)
T ss_dssp --------CCCEE-----CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---
T ss_pred ccccccchhhhhh-----eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---
Confidence 3456777654421 23345668999999999999 9999999999999999 66652 1100000
Q ss_pred cccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC
Q 040987 326 NLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405 (762)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~ 405 (762)
........+|...|.+++|+|++++|++++.|+.|++||........+..|...|.+++|+|+
T Consensus 98 -----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (425)
T 1r5m_A 98 -----------------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKD 160 (425)
T ss_dssp -----------------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTT
T ss_pred -----------------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCC
Confidence 000012233788999999999999999999999999999544444567778899999999999
Q ss_pred CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC-----CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc
Q 040987 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL-----PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG 480 (762)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 480 (762)
+++|++++.++.|++||+.+++.+..+..+...... .......+.+++|+|++ .+++++.++.|++||+.+++.
T Consensus 161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 161 GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP 239 (425)
T ss_dssp SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC
T ss_pred CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce
Confidence 999999999999999999999999888776522100 00000118899999985 588889999999999998876
Q ss_pred eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEE
Q 040987 481 ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISA 560 (762)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~ 560 (762)
...+.. | ...+.+++|+|++++|++++ .++.|++||+.+++....+ .+| ...|.+
T Consensus 240 ~~~~~~----~------~~~i~~~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~-----~~~-~~~i~~ 294 (425)
T 1r5m_A 240 TGKLIG----H------HGPISVLEFNDTNKLLLSAS---------DDGTLRIWHGGNGNSQNCF-----YGH-SQSIVS 294 (425)
T ss_dssp SEEECC----C------SSCEEEEEEETTTTEEEEEE---------TTSCEEEECSSSBSCSEEE-----CCC-SSCEEE
T ss_pred eeeecc----C------CCceEEEEECCCCCEEEEEc---------CCCEEEEEECCCCccceEe-----cCC-CccEEE
Confidence 655432 2 66799999999999999998 8899999999988776655 467 889999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 561 VAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 561 ~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
++|+|++ ++++++.|+.|++||+.+++....+ ..|...|.+++|+|++++|++++ |+.|++||+.++
T Consensus 295 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS-----------IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EEEETTT-EEEEEETTSEEEEEETTTTEEEEEE-----------ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred EEECCCC-EEEEEeCCCcEEEEECCCCcEeEec-----------ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999 9999999999999999887655444 35788999999999999999998 999999999998
Q ss_pred e--------------------EEEEeccccC--ceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 640 V--------------------LVAVIGETLT--PIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 640 ~--------------------~~~~l~~~~~--~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
+ ++..+.+|.. .|.+++|+|++++|++++.||. |++||++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iw~~~ 424 (425)
T 1r5m_A 363 NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE--GSVVAIP 424 (425)
T ss_dssp HC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC--CEEEECC
T ss_pred ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce--EEEEeec
Confidence 8 8899999976 9999999999999999999998 9999986
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=338.43 Aligned_cols=314 Identities=15% Similarity=0.207 Sum_probs=253.6
Q ss_pred ccceeeecccc-ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee----ccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 344 DLCTTWHWHPS-EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK----FLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 344 ~~~~~~~~h~~-~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
.++..+.+|.. .|.+++|+|+|++|++++.|++|++||+.++... ....|...|.+++|+|++++|++++.|+.+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 35678889988 9999999999999999999999999999887532 235788899999999999999999999999
Q ss_pred EEEEcCCc--eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 419 HLLKMPSM--EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 419 ~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
++|+...+ +.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.++.....+.. ...|
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~----------~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~h----- 149 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHE----------NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-LNSH----- 149 (345)
T ss_dssp EEEEECCC-EEEEEEECCCS----------SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-ECCC-----
T ss_pred EEEEccCCCeEEEEEccCCC----------CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-ecCc-----
Confidence 99999875 4567788877 7899999999999999999999999999987654433222 2223
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
...|.+++|+|++++|++++ .|+.|++||..++..... ..+.+| ...|.+++|+|++++|++++.|
T Consensus 150 -~~~v~~~~~~p~~~~l~s~s---------~d~~i~~w~~~~~~~~~~---~~~~~h-~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 150 -TQDVKHVVWHPSQELLASAS---------YDDTVKLYREEEDDWVCC---ATLEGH-ESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp -CSCEEEEEECSSSSCEEEEE---------TTSCEEEEEEETTEEEEE---EEECCC-SSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCeEEEEECCCCCEEEEEe---------CCCcEEEEEecCCCEEEE---EEecCC-CCceEEEEECCCCCEEEEEeCC
Confidence 67799999999999999999 889999999987653221 124788 8999999999999999999999
Q ss_pred CcEEEEEccccccccccc----CCceeeeeeccc-CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe---------E
Q 040987 577 GDFKVWICNDELQQKDLQ----SSGWSCHAVGSY-KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV---------L 641 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~-~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~---------~ 641 (762)
++|++||........... ...|.+.....+ |...|.+++|+|++..|++++ |+.|++|+...+. .
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 999999975433222111 234445444443 888999999999999999998 9999999987642 1
Q ss_pred EEEeccccCceeEEEEeCCC-CEEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 642 VAVIGETLTPIMNMSFVGSS-EYLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 642 ~~~l~~~~~~v~~~~~s~dg-~~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
.....+|...|++++|+|++ .+|++++.||. |++|++.+++....+
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~--v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE--VAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSC--EEEEEECC-------
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCc--EEEEEecCCCCcccc
Confidence 22346899999999999987 59999999999 999999988765543
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-40 Score=332.80 Aligned_cols=292 Identities=13% Similarity=0.213 Sum_probs=256.1
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
..+++.+|.+.|.+++|+|++++|++++.||+|++||+.+++.. .+..+..++.+++|+|++++|++++.|+.|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45788999999999999999999999999999999999998774 45667889999999999999999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.++..... ...+| ...|.+
T Consensus 85 ~~~~~~~~~~~h~----------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~---~~~~h------~~~v~~ 145 (304)
T 2ynn_A 85 NTGEKVVDFEAHP----------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ---TFEGH------EHFVMC 145 (304)
T ss_dssp TTCCEEEEEECCS----------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE---EECCC------CSCEEE
T ss_pred CCCcEEEEEeCCC----------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh---hhccc------CCcEEE
Confidence 9999999999887 7899999999999999999999999999987643322 12233 677999
Q ss_pred EEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC--CCCeEEEEeCCCcEE
Q 040987 504 VALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP--NRRAAVSSSYGGDFK 580 (762)
Q Consensus 504 ~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp--d~~~l~~~~~dg~i~ 580 (762)
++|+| ++.+|++++ .|+.|++||+........+. .+| ...+..+.|+| ++++|++++.|++|+
T Consensus 146 v~~~p~~~~~l~sgs---------~D~~v~iwd~~~~~~~~~~~----~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 146 VAFNPKDPSTFASGC---------LDRTVKVWSLGQSTPNFTLT----TGQ-ERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp EEECTTCTTEEEEEE---------TTSEEEEEETTCSSCSEEEE----CCC-TTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred EEECCCCCCEEEEEe---------CCCeEEEEECCCCCccceec----cCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 99999 678999999 89999999998877665553 355 67899999987 778999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
+||+.+++....+ .+|...|.+++|+|++++|++|+ |++|++||+.+++++..+..|...+++++|+|
T Consensus 212 iWd~~~~~~~~~~-----------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 212 IWDYQTKSCVATL-----------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEETTTTEEEEEE-----------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEeCCCCccceee-----------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 9999987765544 47899999999999999999998 99999999999999999999999999999999
Q ss_pred CCC--EEEEEEcCCCCeEEEEECCCC
Q 040987 660 SSE--YLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 660 dg~--~l~s~~~d~~~~v~vwd~~~~ 683 (762)
++. ++++++.|| +.+|++.+.
T Consensus 281 ~~~~~~~asg~~~g---~~~~~~~~~ 303 (304)
T 2ynn_A 281 TGRKNYIASGFDNG---FTVLSLGND 303 (304)
T ss_dssp TCGGGCEEEEETTE---EEEEECC--
T ss_pred CCCceEEEEecCCc---eEEEEeccC
Confidence 875 588888887 899988753
No 24
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-40 Score=339.39 Aligned_cols=293 Identities=11% Similarity=0.135 Sum_probs=255.3
Q ss_pred cceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 63 VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 63 ~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
.....+.||.+.|.+ ++|+||+++||+++ |++|+|||..+++..+.+..|...|.+++|+|++ .+|++++.
T Consensus 55 ~~~~~l~gH~~~V~~-~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g-------~~lasg~~ 126 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLC-MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG-------CAIACGGL 126 (354)
T ss_dssp CEEEEEECCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS-------SEEEEEST
T ss_pred EEEEEecCCCCeEEE-EEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC-------CEEEEeeC
Confidence 456678999999998 99999999999999 7999999999999999999999999999999999 78999999
Q ss_pred CCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 142 DGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 142 d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
|+++++|++.......
T Consensus 127 d~~i~v~~~~~~~~~~---------------------------------------------------------------- 142 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNEN---------------------------------------------------------------- 142 (354)
T ss_dssp TSEEEEEECCCCTTCC----------------------------------------------------------------
T ss_pred CCCEEEEEEecccccc----------------------------------------------------------------
Confidence 9999999986432100
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--CCcEEEE
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--TQRIVAA 298 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~ 298 (762)
. .........|...|.+++|+|+++.|+ ++.|+.|++||+.+++.. ..+.+|...|.+++|+| ++++|++
T Consensus 143 -~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 143 -M-AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-----QSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp -S-GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred -c-cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE-----EEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 0 000023456888999999999999887 457999999999998754 66778999999999988 5689999
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEE
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
|+.||.|++||+.+++ ++..+.+|...|.+++|+|++++|++++.|++|+
T Consensus 216 gs~Dg~v~~wd~~~~~------------------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQ------------------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265 (354)
T ss_dssp EETTSCEEEEETTTCC------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeCCCeEEEEECCCCc------------------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence 9999999999997764 3467788999999999999999999999999999
Q ss_pred EEecCCCceeccCC---CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 379 VWQLDTGKKKFLPR---IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 379 ~wd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
+||+++++...... +...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|. +.|.+++|+
T Consensus 266 lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~----------~~v~~l~~s 335 (354)
T 2pbi_B 266 LYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE----------NRVSTLRVS 335 (354)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS----------SCEEEEEEC
T ss_pred EEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC----------CcEEEEEEC
Confidence 99999887643322 23478999999999999999999999999999999999998887 789999999
Q ss_pred CCCCEEEEeecCceEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d 474 (762)
|++++|++++.|+.|++|+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 9999999999999999996
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.7e-41 Score=346.71 Aligned_cols=324 Identities=13% Similarity=0.087 Sum_probs=232.9
Q ss_pred CceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC------CeEEEEeCC
Q 040987 78 PPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD------GTIKYWDFS 151 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d------~~i~vWd~~ 151 (762)
.+.+.+++.++.+.++.....|++.... ..+|...|++++||||| ++|+|++.| ++|++|+..
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG-------~~las~s~d~~~~wd~~v~~~~~~ 78 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDG-------ALLLAASSLSSRTWGGSIWVFKDP 78 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSS-------CEEEEEECSSSSSCCEEEEEESSC
T ss_pred CCCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCC-------CEEEEEcCCCCccccCeEEEEECC
Confidence 3667888888777777888999986443 35799999999999999 788999984 445555544
Q ss_pred CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceee
Q 040987 152 VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVT 231 (762)
Q Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~ 231 (762)
++.... ......
T Consensus 79 ~~~~~~--------------------------------------------------------------------~~~~~~ 90 (357)
T 4g56_B 79 EGAPNE--------------------------------------------------------------------SLCTAG 90 (357)
T ss_dssp C---CG--------------------------------------------------------------------GGCSEE
T ss_pred CCCcce--------------------------------------------------------------------eEeccc
Confidence 332110 011234
Q ss_pred eccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 232 LAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 232 ~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.+|...|.+++|+|++++|+++.++.|+|||+.+++.... ......+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~-~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLV-NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CC-CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEE-EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 5678889999999999999999999999999998875411 112344799999999999999999999999999999997
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEEEEecCCeEEEEecCCCceec-
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLYSGGKEGVLVVWQLDTGKKKF- 389 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~- 389 (762)
+++ ++..+.+|...|.+++|++++. ++++++.|+.|++||+++++...
T Consensus 170 ~~~------------------------------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 170 QKA------------------------------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp TTE------------------------------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CCc------------------------------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 764 3467888999999999999875 78899999999999999987643
Q ss_pred --cCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEee
Q 040987 390 --LPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRA 465 (762)
Q Consensus 390 --~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~ 465 (762)
...+...+.+++|+|++ .+|++++.|+.|++||+.+++.+..+.+|. ..|.+++|+|++ ++|++++
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~----------~~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS----------QNITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS----------SCEEEEEECSSSSCCEEEEE
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc----------eeEEEEEEcCCCCCEEEEEe
Confidence 33456689999999975 678889999999999999999999998877 789999999987 5789999
Q ss_pred cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 466 ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 466 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
.|+.|++||+.+++.+..+ +| ...|++++|+| |+++|++++ .|++|++|++.+...
T Consensus 290 ~D~~i~iwd~~~~~~~~~~-----~H------~~~V~~vafsP~d~~~l~s~s---------~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 290 EDCTVAVLDADFSEVFRDL-----SH------RDFVTGVAWSPLDHSKFTTVG---------WDHKVLHHHLPSEGR 346 (357)
T ss_dssp TTSCEEEECTTSCEEEEEC-----CC------SSCEEEEEECSSSTTEEEEEE---------TTSCEEEEECC----
T ss_pred CCCEEEEEECCCCcEeEEC-----CC------CCCEEEEEEeCCCCCEEEEEc---------CCCeEEEEECCCCCc
Confidence 9999999999887654332 23 67899999998 899999999 899999999976543
No 26
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.8e-40 Score=336.60 Aligned_cols=290 Identities=14% Similarity=0.184 Sum_probs=251.7
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
.....+.+|...|.+++|+|++++|++++.|++|++||..+++.. ....+...+.+++|+|+|.++++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 345788999999999999999999999999999999999888764 3455677899999999999999999999999999
Q ss_pred cCCc------eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 423 MPSM------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 423 ~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
+... .....+.+|. +.|.+++|+|++..|++++.|++|++||+.+++.+..+.. |
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~----h----- 195 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHT----------NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG----H----- 195 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECS----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC----C-----
T ss_pred EeccccccccccceeeeccC----------CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC----C-----
Confidence 8643 2334455555 7899999999999999999999999999999887665542 2
Q ss_pred cceeEEEEEEec--CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 497 VTVVVTLVALSQ--DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 497 ~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
...+.+++|+| ++++|++++ .|+.|++||+++++....+ .+| ...|++++|+|++++|++++
T Consensus 196 -~~~v~~~~~~~~~~g~~l~sgs---------~Dg~v~~wd~~~~~~~~~~-----~~h-~~~v~~v~~~p~~~~l~s~s 259 (354)
T 2pbi_B 196 -GADVLCLDLAPSETGNTFVSGG---------CDKKAMVWDMRSGQCVQAF-----ETH-ESDVNSVRYYPSGDAFASGS 259 (354)
T ss_dssp -SSCEEEEEECCCSSCCEEEEEE---------TTSCEEEEETTTCCEEEEE-----CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred -CCCeEEEEEEeCCCCCEEEEEe---------CCCeEEEEECCCCcEEEEe-----cCC-CCCeEEEEEeCCCCEEEEEe
Confidence 66799999987 578999999 8999999999998766554 678 88999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM 653 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~ 653 (762)
.|++|++||+..+.....+. ...+...+.+++|+|+|++|++|+ |+.|++||+.+++.+..+.+|...|.
T Consensus 260 ~D~~v~lwd~~~~~~~~~~~---------~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~ 330 (354)
T 2pbi_B 260 DDATCRLYDLRADREVAIYS---------KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS 330 (354)
T ss_dssp TTSCEEEEETTTTEEEEEEC---------CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred CCCeEEEEECCCCcEEEEEc---------CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEE
Confidence 99999999998775543331 112345789999999999999998 99999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 654 NMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+++|+|||++|++++.|+. |++|+
T Consensus 331 ~l~~spdg~~l~sgs~D~~--v~vW~ 354 (354)
T 2pbi_B 331 TLRVSPDGTAFCSGSWDHT--LRVWA 354 (354)
T ss_dssp EEEECTTSSCEEEEETTSE--EEEEC
T ss_pred EEEECCCCCEEEEEcCCCC--EEecC
Confidence 9999999999999999998 99996
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=335.41 Aligned_cols=300 Identities=14% Similarity=0.113 Sum_probs=235.1
Q ss_pred EEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccce-----------EEeeecCCccceeEEEEeC
Q 040987 56 RTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL-----------QISSLEGHKAPVTTVIVVP 124 (762)
Q Consensus 56 ~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~-----------~~~~l~~h~~~V~~v~~s~ 124 (762)
+.|+++.... ..|...|.+ ++|||||++|++++++++++||..... .......|...|.+++|+|
T Consensus 17 r~w~~~~~~~---~~~~~~v~~-~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 17 REWNLPPNAP---ACMERQLEA-ARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp ------CCSC---SSCCSEEEE-EEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred cccCCCCCCc---ccccCCEEE-EEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 5687765443 356777887 999999999999998888888743211 1111223567899999999
Q ss_pred CCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCc
Q 040987 125 ASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHK 204 (762)
Q Consensus 125 ~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
++ .|++|+.||+|+|||+.+++.+..+.
T Consensus 93 d~--------~l~~~s~dg~v~lWd~~~~~~~~~~~-------------------------------------------- 120 (344)
T 4gqb_B 93 ER--------GILVASDSGAVELWELDENETLIVSK-------------------------------------------- 120 (344)
T ss_dssp TT--------EEEEEETTSEEEEEEECTTSSCEEEE--------------------------------------------
T ss_pred CC--------eEEEEECCCEEEEEeccCCCceeEee--------------------------------------------
Confidence 97 45699999999999999887665443
Q ss_pred cCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 205 KEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 205 ~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
....+|...|.+++|+|||++|+++ .|+.|++||+.+++.. ..+.+|...
T Consensus 121 ------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~-----~~~~~h~~~ 171 (344)
T 4gqb_B 121 ------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL-----SSYRAHAAQ 171 (344)
T ss_dssp ------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----EEECCCSSC
T ss_pred ------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-----EEEcCcCCc
Confidence 2345688999999999999999965 7999999999998765 677899999
Q ss_pred eEEEEEcCCCc-EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 284 LTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 284 v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
|.+++|+|++. +|++++.|+.|++||+.+++.... .....|...+.+++|+
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ----------------------------IGCSAPGYLPTSLAWH 223 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE----------------------------CC----CCCEEEEEEC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee----------------------------eecceeeccceeeeec
Confidence 99999999885 789999999999999987754320 1123456678999999
Q ss_pred cC-CCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 363 SD-GAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 363 ~~-g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
|+ +++|++++.|++|++||+++++.. .+..|...|.+++|+|++ ++|++++.|+.|++||+.++++. .+.+|.
T Consensus 224 p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~--- 299 (344)
T 4gqb_B 224 PQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHR--- 299 (344)
T ss_dssp SSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCS---
T ss_pred CCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCC---
Confidence 85 578899999999999999998874 467788999999999998 57899999999999999988765 456776
Q ss_pred CCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCC
Q 040987 440 PLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~ 479 (762)
+.|.+++|+|+++ +|++++.|++|++|++.+..
T Consensus 300 -------~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 300 -------DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp -------SCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred -------CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 7899999999986 56789999999999997653
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-39 Score=329.29 Aligned_cols=312 Identities=13% Similarity=0.171 Sum_probs=249.6
Q ss_pred cceEEeeecCCcc-ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccC
Q 040987 103 TGLQISSLEGHKA-PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSD 181 (762)
Q Consensus 103 ~~~~~~~l~~h~~-~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (762)
..+++.++.+|.. .|.+++|+|+| .+||+|+.|++|+|||+.++......
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g-------~~las~~~D~~i~iw~~~~~~~~~~~---------------------- 54 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAG-------TLLASCGGDRRIRIWGTEGDSWICKS---------------------- 54 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTS-------SCEEEEETTSCEEEEEEETTEEEEEE----------------------
T ss_pred cEEEeeeecCCCCCcEEEEEECCCC-------CEEEEEcCCCeEEEEEcCCCcceeee----------------------
Confidence 3467889999988 99999999999 78999999999999998776533211
Q ss_pred CCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEE
Q 040987 182 EKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLI 260 (762)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~i 260 (762)
....+|...|.+++|+|+|++|+++ .|+.+++
T Consensus 55 -----------------------------------------------~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 55 -----------------------------------------------VLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp -----------------------------------------------EECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -----------------------------------------------eeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 1234678899999999999999855 6999999
Q ss_pred EEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccC
Q 040987 261 WKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDN 340 (762)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (762)
|++..+.. .....+.+|...|.+++|+|++++|++|+.|+.|++||+..+...
T Consensus 88 w~~~~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~------------------------ 140 (345)
T 3fm0_A 88 WKKNQDDF---ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY------------------------ 140 (345)
T ss_dssp EEECCC-E---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE------------------------
T ss_pred EEccCCCe---EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe------------------------
Confidence 99987653 223566789999999999999999999999999999998765322
Q ss_pred CccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 341 DDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 341 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
.++..+.+|...|.+++|+|++++|++++.|++|++||..+++. ..+..|...|.+++|+|++++|++++.|+.
T Consensus 141 ---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 141 ---ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp ---EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence 23467788999999999999999999999999999999988754 356788899999999999999999999999
Q ss_pred EEEEEcCCc---------------eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce-
Q 040987 418 VHLLKMPSM---------------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI- 481 (762)
Q Consensus 418 i~i~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~- 481 (762)
|++|+.... +++..+.+. |...|.+++|+|++..|++++.|+.|++|+.......
T Consensus 218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 288 (345)
T 3fm0_A 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF---------HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ 288 (345)
T ss_dssp EEEEEEECTTCTTCCCCC---CEEEEEEEECSS---------CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT
T ss_pred EEEeccccCCCCccceeeccCCccceeEEecCC---------CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc
Confidence 999996321 233344331 2378999999999999999999999999998765321
Q ss_pred ---eeEEe-ecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 482 ---SEVQV-CERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 482 ---~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
..+.. .... |...|.+++|+|++. +||+++ .|+.|++|++.+.+....
T Consensus 289 ~~~~~~~~~~~~~------h~~~V~~v~~~p~~~~~laS~s---------~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 289 QPTFSLTAHLHQA------HSQDVNCVAWNPKEPGLLASCS---------DDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp SCCEEEEEEETTS------SSSCEEEEEECSSSTTEEEEEE---------TTSCEEEEEECC------
T ss_pred eeeEEEEeeeccc------ccCcEeEeEEeCCCceEEEEcC---------CCCcEEEEEecCCCCccc
Confidence 11111 1122 377899999999984 899998 899999999998876543
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-40 Score=342.62 Aligned_cols=316 Identities=12% Similarity=0.165 Sum_probs=256.9
Q ss_pred EEEecCCc-ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCccccee
Q 040987 56 RTAEYPAV-NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKIL 133 (762)
Q Consensus 56 ~~~~~~~~-~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~ 133 (762)
..|+..+. ....+.||.+.|.+ ++|+|||++||+|+ |++|+|||+.+++.+..+.+|...|.+++|+|++
T Consensus 49 ~~~~~~~~~~~~~l~gH~~~V~~-~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g------- 120 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQGHSGKVYS-LDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG------- 120 (380)
T ss_dssp CCCCCCCCEEEEEECCCSSCEEE-EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS-------
T ss_pred cccccceeEEeecccccccEEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC-------
Confidence 34555443 34568999999998 99999999999999 7999999999999999999999999999999999
Q ss_pred eeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcc
Q 040987 134 SYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMN 213 (762)
Q Consensus 134 ~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 213 (762)
.+|++++.|++|++||+.+.... +..
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~------------------------~~~------------------------------ 146 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADR------------------------DGN------------------------------ 146 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSC------------------------CCS------------------------------
T ss_pred CEEEEeeCCCcEEEEECCCCccc------------------------cCC------------------------------
Confidence 78999999999999998754210 000
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCC-CEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSG-KYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
........+|.+.+.+++|+|++ ..|+ ++.|+.|++||+.+++...........+|...|.+++|++
T Consensus 147 -----------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 147 -----------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp -----------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred -----------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 00113456788999999999975 4455 5579999999999987541111112257999999999987
Q ss_pred -CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEE
Q 040987 292 -TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYS 370 (762)
Q Consensus 292 -~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 370 (762)
++++|++|+.||.|++||+.... ..+..+.+|...|.+++|+|++++|++
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~-----------------------------~~~~~~~~h~~~v~~v~~~p~~~~l~s 266 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITS-----------------------------RAVRTYHGHEGDINSVKFFPDGQRFGT 266 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTC-----------------------------CCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCCC-----------------------------cceEEECCcCCCeEEEEEecCCCeEEE
Confidence 88999999999999999986332 234678899999999999999999999
Q ss_pred EecCCeEEEEecCCCceeccC-C-------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC
Q 040987 371 GGKEGVLVVWQLDTGKKKFLP-R-------IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP 442 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~~-~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (762)
++.|++|++||+++++..... . +...+.+++|+|+|++|++++.||.|++||..+++....+....
T Consensus 267 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~------ 340 (380)
T 3iz6_a 267 GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ------ 340 (380)
T ss_dssp ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSC------
T ss_pred EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEeccc------
Confidence 999999999999998764322 1 12248899999999999999999999999999988887773211
Q ss_pred CcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
..|.+.|.+++|+|++++|++++.|+.|++|++...+
T Consensus 341 ~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 1233789999999999999999999999999997654
No 30
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3e-39 Score=326.43 Aligned_cols=289 Identities=16% Similarity=0.230 Sum_probs=249.4
Q ss_pred cceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
+...+.+|.+.|.+++|+|++ ++|++++.|++|++|++..... ..+..|...|.+++|+|++++|++++.|+.
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 446789999999999999965 8999999999999999875321 346678999999999999999999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
|++||+.+++.+..+.+|. ..|.+++|+|++.+|++++.|+.|++||+... .+..+ .+|
T Consensus 89 v~~wd~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~----~~h------ 147 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHK----------SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATL----LGH------ 147 (319)
T ss_dssp EEEEETTTTEEEEEEECCS----------SCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEE----CCC------
T ss_pred EEEEECCCCCeeEEEccCC----------CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEE----ecc------
Confidence 9999999999999999987 78999999999999999999999999999643 22222 222
Q ss_pred ceeEEEEEEecC------CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEE
Q 040987 498 TVVVTLVALSQD------GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAV 571 (762)
Q Consensus 498 ~~~v~~~~~sp~------g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~ 571 (762)
...+.+++|+|. +..+++++ .|+.|++||+.+.+....+ .+| ...|.+++|+|++++|+
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~-----~~h-~~~v~~~~~sp~g~~l~ 212 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAG---------NDKMVKAWNLNQFQIEADF-----IGH-NSNINTLTASPDGTLIA 212 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEE---------TTSCEEEEETTTTEEEEEE-----CCC-CSCEEEEEECTTSSEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEe---------CCCEEEEEECCcchhheee-----cCC-CCcEEEEEEcCCCCEEE
Confidence 677999999985 45899998 8999999999887654443 688 89999999999999999
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec-----
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG----- 646 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~----- 646 (762)
+++.||.|++||+.+++....+. +...|.+++|+|++.+|+++.++.+++|+++.+..+..+.
T Consensus 213 s~~~dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~ 280 (319)
T 3frx_A 213 SAGKDGEIMLWNLAAKKAMYTLS------------AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG 280 (319)
T ss_dssp EEETTCEEEEEETTTTEEEEEEE------------CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTT
T ss_pred EEeCCCeEEEEECCCCcEEEEec------------CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccc
Confidence 99999999999999887665542 3568999999999999999988889999999887776664
Q ss_pred ---cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 647 ---ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 647 ---~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.|...+.+++|+|||++|++++.|+. |++||+.++
T Consensus 281 ~~~~~~~~v~~~~~spdg~~l~sg~~Dg~--i~vWd~~t~ 318 (319)
T 3frx_A 281 YSKAAEPHAVSLAWSADGQTLFAGYTDNV--IRVWQVMTA 318 (319)
T ss_dssp CCGGGCCCEEEEEECTTSSEEEEEETTSC--EEEEEEEEC
T ss_pred cccCcCcceeEEEECCCCCEEEEeecCce--EEEEEEeec
Confidence 24566899999999999999999998 999999875
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-39 Score=331.03 Aligned_cols=319 Identities=12% Similarity=0.136 Sum_probs=270.8
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
+...|.+++|+|||++++++..++.+..|...... ......+|...|.++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~h~~~v~~~ 57 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA------------------------------RQINTLNHGEVVCAV 57 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE------------------------------EEEEEECCSSCCCEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc------------------------------ccceeccCCCceEEE
Confidence 45689999999999999988877766555432221 122344799999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecCCCceec------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce--EEEE
Q 040987 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKF------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME--IIRS 431 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~--~~~~ 431 (762)
+|+|++++|++++ |+.|++||+.+++... ...+...+.+++|+|+++++++++.++.|++||+.+++ ....
T Consensus 58 ~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 136 (337)
T 1gxr_A 58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136 (337)
T ss_dssp EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred EEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee
Confidence 9999999999998 9999999998876422 22678899999999999999999999999999999876 5556
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
+..+. ..+.+++|+|+++++++++.|+.|++||+.+++....+.. | ...+.+++|+|+++
T Consensus 137 ~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----~------~~~i~~~~~~~~~~ 196 (337)
T 1gxr_A 137 LTSSA----------PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG----H------TDGASCIDISNDGT 196 (337)
T ss_dssp EECSS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----C------SSCEEEEEECTTSS
T ss_pred cccCC----------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec----c------cCceEEEEECCCCC
Confidence 66665 7889999999999999999999999999998765554432 2 66799999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
+|++++ .++.|++||+.+++....+ .+ ...+.+++|+|+++++++++.|+.|++||+.+++...
T Consensus 197 ~l~~~~---------~dg~i~~~d~~~~~~~~~~------~~-~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 197 KLWTGG---------LDNTVRSWDLREGRQLQQH------DF-TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp EEEEEE---------TTSEEEEEETTTTEEEEEE------EC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred EEEEEe---------cCCcEEEEECCCCceEeee------cC-CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence 999998 8899999999988765554 24 6789999999999999999999999999998876432
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcC
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
. ..|...|.+++|+|++++|++++ |+.|++||+.+++.+... .|...+.+++|+|++++|++++.|
T Consensus 261 ~------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 261 L------------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp E------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETT
T ss_pred E------------cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCC
Confidence 2 35788999999999999999998 999999999999888655 488899999999999999999999
Q ss_pred CCCeEEEEEC
Q 040987 671 SKPQLSVWNM 680 (762)
Q Consensus 671 ~~~~v~vwd~ 680 (762)
|. |++|++
T Consensus 328 g~--i~iw~~ 335 (337)
T 1gxr_A 328 KK--ATVYEV 335 (337)
T ss_dssp SC--EEEEEE
T ss_pred Ce--EEEEEE
Confidence 98 999996
No 32
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.9e-39 Score=324.30 Aligned_cols=297 Identities=12% Similarity=0.147 Sum_probs=252.3
Q ss_pred eeeeccCCCceEEEECCCC-CEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEE
Q 040987 229 GVTLAEMKEPQVITISSSG-KYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg-~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 306 (762)
..+.+|.+.|.+++|+|++ ++|++ +.|+.|++|++.............+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 5677899999999999975 78874 579999999997654321223456779999999999999999999999999999
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+||+.+++ .+..+.+|...|.+++|+|++++|++++.|++|++||++...
T Consensus 91 ~wd~~~~~------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~ 140 (319)
T 3frx_A 91 LWDVATGE------------------------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140 (319)
T ss_dssp EEETTTTE------------------------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE
T ss_pred EEECCCCC------------------------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Confidence 99997764 346788999999999999999999999999999999998766
Q ss_pred eeccCCCCCCeEEEEeCCC------CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 387 KKFLPRIGSPLLYFTESPD------PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 387 ~~~~~~~~~~v~~~~~s~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
...+..|...+.++.++|+ +..+++++.|+.|++||+.+++....+.+|. ..|.+++|+|++++
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~----------~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN----------SNINTLTASPDGTL 210 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC----------SCEEEEEECTTSSE
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC----------CcEEEEEEcCCCCE
Confidence 6677889999999999985 4589999999999999999999999998887 78999999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
|++++.|+.|++||+.+++.+..+.. ...+.+++|+|++.+++++. . ..+++|++....
T Consensus 211 l~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~la~~~---------~-~~i~v~~~~~~~ 269 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKKAMYTLSA-----------QDEVFSLAFSPNRYWLAAAT---------A-TGIKVFSLDPQY 269 (319)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEEC-----------CSCEEEEEECSSSSEEEEEE---------T-TEEEEEEETTEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecC-----------CCcEEEEEEcCCCCEEEEEc---------C-CCcEEEEeCcCe
Confidence 99999999999999998877666543 34699999999999999986 3 469999998765
Q ss_pred ceeEEEEEe---ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 541 KEFTLSTIV---YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 541 ~~~~~~~~~---~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
....+.... ...| ...+.+++|+|||++|++++.|+.|++||+.++
T Consensus 270 ~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 270 LVDDLRPEFAGYSKAA-EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECCCCTTCCGGG-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeeccCccccccccCc-CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 544432110 1234 567899999999999999999999999999754
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.4e-39 Score=326.40 Aligned_cols=309 Identities=10% Similarity=0.103 Sum_probs=238.5
Q ss_pred EEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCc
Q 040987 258 LLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGV 337 (762)
Q Consensus 258 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (762)
.+.|++.... ...|...|.+++|+|||++|++++ |+++++||..... +... .
T Consensus 16 ~r~w~~~~~~---------~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~-~~~~---~-------------- 67 (344)
T 4gqb_B 16 AREWNLPPNA---------PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWL-FKDP---C-------------- 67 (344)
T ss_dssp -------CCS---------CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEE-ESSG---G--------------
T ss_pred ccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeee-eccc---c--------------
Confidence 3567665443 235677899999999999998877 7788888742110 0000 0
Q ss_pred ccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----ccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 338 RDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-----FLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
.............|...|.+++|+|++ .|++++.||+|++||+++++.. ....|...|.+++|+|+|++|+++
T Consensus 68 -~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg 145 (344)
T 4gqb_B 68 -AAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG 145 (344)
T ss_dssp -GTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred -ccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEE
Confidence 000001122334567789999999985 7889999999999999988753 234788999999999999999999
Q ss_pred ecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 413 CADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
+.|+.|++||+.+++.+..+.+|. +.|.+++|+|++. ++++++.|+.|++||+++++....+.....
T Consensus 146 s~d~~i~iwd~~~~~~~~~~~~h~----------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-- 213 (344)
T 4gqb_B 146 SKDICIKVWDLAQQVVLSSYRAHA----------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP-- 213 (344)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------
T ss_pred eCCCeEEEEECCCCcEEEEEcCcC----------CceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee--
Confidence 999999999999999999999987 7899999999885 688999999999999999887766543222
Q ss_pred cCCCCcceeEEEEEEecC-CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC-Ce
Q 040987 492 QPGDDVTVVVTLVALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR-RA 569 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~-~~ 569 (762)
...+.+++|+|+ +++|++++ .|+.|++||+++++.+..+ .+| ...|++++|+|++ ++
T Consensus 214 ------~~~~~~~~~~p~~~~~l~sg~---------~dg~v~~wd~~~~~~~~~~-----~~h-~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 214 ------GYLPTSLAWHPQQSEVFVFGD---------ENGTVSLVDTKSTSCVLSS-----AVH-SQCVTGLVFSPHSVPF 272 (344)
T ss_dssp ------CCCEEEEEECSSCTTEEEEEE---------TTSEEEEEESCC--CCEEE-----ECC-SSCEEEEEECSSSSCC
T ss_pred ------eccceeeeecCCCCcceEEec---------cCCcEEEEECCCCcEEEEE-----cCC-CCCEEEEEEccCCCeE
Confidence 456899999995 56788888 8899999999998887665 578 8999999999998 57
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc-CCeEEEEeCCCCeE
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~-d~~i~iwd~~~~~~ 641 (762)
|++++.|++|+|||+.+++.... .+|...|++++|+|+++ +|++++ |++|++|++.+...
T Consensus 273 lasgs~D~~i~vwd~~~~~~~~~------------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 273 LASLSEDCSLAVLDSSLSELFRS------------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEETTSCEEEECTTCCEEEEE------------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEeCCCeEEEEECCCCcEEEE------------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999999999999988765432 36899999999999986 567887 99999999987543
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9e-39 Score=333.30 Aligned_cols=299 Identities=16% Similarity=0.242 Sum_probs=248.5
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCC------------------CCCeEEEEeCCCCCeEEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRI------------------GSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~------------------~~~v~~~~~s~~~~~l~~ 411 (762)
+|...|.+++|+|||++|++++ ++.+++|++.+++.... ..+ ...|.+++|+|+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 68999999998876432 211 124899999999999999
Q ss_pred EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 412 SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
++.|+.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.+++....+..
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~----------~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----- 205 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHE----------QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI----- 205 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----
T ss_pred EcCCCeEEEEECCCCcEEEEEccCC----------CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-----
Confidence 9999999999999999999999887 7899999999999999999999999999998876554432
Q ss_pred cCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE--eecCCCCCceEEEEEcCCCC
Q 040987 492 QPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI--VYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~h~~~~v~~~~~spd~~ 568 (762)
...+.+++|+| ++++|++++ .|+.|++||+.++.....+... ...+| ...|.+++|+|+++
T Consensus 206 ------~~~v~~~~~~~~~~~~l~~~s---------~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 206 ------EDGVTTVAVSPGDGKYIAAGS---------LDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQ 269 (393)
T ss_dssp ------SSCEEEEEECSTTCCEEEEEE---------TTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTSS
T ss_pred ------CCCcEEEEEECCCCCEEEEEc---------CCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCCC
Confidence 45689999999 899999999 8999999999988766554321 12578 88999999999999
Q ss_pred eEEEEeCCCcEEEEEccccccccccc-CCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec
Q 040987 569 AAVSSSYGGDFKVWICNDELQQKDLQ-SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 569 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~ 646 (762)
+|++++.|+.|++||+.+........ .....+.....+|...|.+++|+|++++|++|+ |+.|++||+.+++++..+.
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 99999999999999998754432211 111224445567899999999999999999998 9999999999999999999
Q ss_pred cccCceeEEEEeC------CCCEEEEEEcCCCCeEEEEECCCC
Q 040987 647 ETLTPIMNMSFVG------SSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 647 ~~~~~v~~~~~s~------dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
+|...|.+++|++ ++++|++++.|+. |++|++...
T Consensus 350 ~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~--i~iW~~~~~ 390 (393)
T 1erj_A 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCK--ARIWKYKKI 390 (393)
T ss_dssp CCSSCEEEEEECSSCTTCTTCEEEEEEETTSE--EEEEEEEEC
T ss_pred CCCCCEEEEEecCCcCcCCCCCEEEEECCCCc--EEECccccc
Confidence 9999999999986 6889999999998 999998653
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-39 Score=343.99 Aligned_cols=338 Identities=13% Similarity=0.160 Sum_probs=275.8
Q ss_pred CeEEEEecCCccee-eeecCcccccCCceeecCCC-EEEEEe-CCEEEEEEc----ccce------EEeeecC-------
Q 040987 53 GLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFST----STGL------QISSLEG------- 112 (762)
Q Consensus 53 g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~dg~-~la~~~-~~~i~iwd~----~~~~------~~~~l~~------- 112 (762)
..+.+|+....... ....|.+.|.+ ++|+|+|+ +||+++ |+.|+|||+ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVS-STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ---------CCCEECEEEEECSCCSE-EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred cccccccchhhhhheeeeeccCceEE-EEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 44567887653333 33566799997 99999999 999999 699999999 8888 4555544
Q ss_pred ---CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceE
Q 040987 113 ---HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 113 ---h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
|...|++++|+|++ .+|++++.|+.|++|| .+++.+..+..|. ++.++.| .+++.. +
T Consensus 104 ~~~~~~~v~~~~~s~~~-------~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~--------~~~~~~---l 164 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDG-------NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKW--------NKDGTH---I 164 (425)
T ss_dssp ----CBCEEEEEECTTS-------SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEE--------CTTSSE---E
T ss_pred ccCCCCceEEEEEcCCC-------CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEE--------CCCCCE---E
Confidence 78899999999999 7889999999999999 7788888888776 8888877 333321 1
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCC---------------ceEEEECCCCCEEEEE
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE---------------PQVITISSSGKYFGIR 253 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------v~~~~~spdg~~la~~ 253 (762)
++++.|+.|++||+.+++.+ .....+... +.+++|+|++.+++++
T Consensus 165 -------------------~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (425)
T 1r5m_A 165 -------------------ISMDVENVTILWNVISGTVM-QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224 (425)
T ss_dssp -------------------EEEETTCCEEEEETTTTEEE-EEECCC---------------CCCBSCCEEEETTEEEEEC
T ss_pred -------------------EEEecCCeEEEEECCCCcEE-EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEc
Confidence 55678999999999999887 344444444 9999999998877788
Q ss_pred eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccC
Q 040987 254 KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEE 333 (762)
Q Consensus 254 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (762)
.++.|++||+.+++.. .....|...|.+++|+|++++|++++.||.|++||+..++
T Consensus 225 ~~g~i~~~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------------- 280 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPT-----GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN------------------- 280 (425)
T ss_dssp GGGCEEEEETTCSSCS-----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-------------------
T ss_pred CCCeEEEEEcCCCcee-----eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-------------------
Confidence 9999999999988754 5566899999999999999999999999999999987653
Q ss_pred CCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEE
Q 040987 334 RPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
....+..|...|.+++|+|++ ++++++.|+.|++||+.+++... +..+...+.+++|+|++++|+++
T Consensus 281 -----------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 281 -----------SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp -----------CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE
T ss_pred -----------cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE
Confidence 345677899999999999999 99999999999999999888754 45678899999999999999999
Q ss_pred ecCCcEEEEEcCCce--------------------EEEEEccCCCCCCCCCcccC--ceeeEEEeCCCCEEEEeecCceE
Q 040987 413 CADNQVHLLKMPSME--------------------IIRSISGIKLPCPLPEEYKG--LCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 413 ~~d~~i~i~d~~~~~--------------------~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
+.++.|++||+.+++ .+..+.++. . .|.+++|+|++++|++++.||.|
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ----------DNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEECCTT----------CCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcc----------cCCceEEEEccCCCceEEEEecCceE
Confidence 999999999999887 788888775 4 89999999999999999999999
Q ss_pred EEEEcC
Q 040987 471 HFYSLL 476 (762)
Q Consensus 471 ~i~d~~ 476 (762)
++||+.
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999985
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.7e-40 Score=341.30 Aligned_cols=308 Identities=17% Similarity=0.251 Sum_probs=254.8
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 420 (762)
+..+...+.+|.+.|++++|+|++++|++++.|++|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 33566789999999999999999999999999999999999988774 46678888999999999999999999999999
Q ss_pred EEcCCce-------EEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 421 LKMPSME-------IIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 421 ~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
|++.+.. ....+.+|. +.+.++.|.|+ +..|++++.|+.|++||+.+++.+..+....
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~----------~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~---- 200 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHK----------GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF---- 200 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCS----------SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS----
T ss_pred EECCCCccccCCccceeeccCCC----------cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc----
Confidence 9987532 223344444 78899999996 4579999999999999999987765542211
Q ss_pred CCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCC-CceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 493 PGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ-NKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
...|...+.+++|++ ++++|++++ .|+.|++||++.. ..... +.+| ...|.+++|+|++++|
T Consensus 201 -~~~h~~~v~~~~~~~~~~~~l~sgs---------~D~~v~~wd~~~~~~~~~~-----~~~h-~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 201 -PSGHTADVLSLSINSLNANMFISGS---------CDTTVRLWDLRITSRAVRT-----YHGH-EGDINSVKFFPDGQRF 264 (380)
T ss_dssp -SSSCCSCEEEEEECSSSCCEEEEEE---------TTSCEEEEETTTTCCCCEE-----ECCC-SSCCCEEEECTTSSEE
T ss_pred -CCCCccCeEEEEeecCCCCEEEEEE---------CCCeEEEEECCCCCcceEE-----ECCc-CCCeEEEEEecCCCeE
Confidence 122377899999987 889999999 8999999999844 33333 3688 8999999999999999
Q ss_pred EEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe----
Q 040987 571 VSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI---- 645 (762)
Q Consensus 571 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l---- 645 (762)
++++.|++|++||+.++.....+.... .....+...|++++|+|+|++|++|+ ||.|++||+.+++.+..+
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 340 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREP----DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ 340 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCC----SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSC
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccc----cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEeccc
Confidence 999999999999999887665442000 00112234589999999999999998 999999999999888777
Q ss_pred ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 646 GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 646 ~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
.+|.+.|.+++|+|||++|++++.|+. |++|++..++.
T Consensus 341 ~~h~~~v~~l~~s~dg~~l~sgs~D~~--i~iW~~~~~~~ 378 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDGSALCTGSWDKN--LKIWAFSGHRK 378 (380)
T ss_dssp SSCCCCCCEEEECSSSSEEEEECTTSC--EEEEECCSSSS
T ss_pred CCCCCceEEEEECCCCCEEEEeeCCCC--EEEEecCCCcc
Confidence 679999999999999999999999998 99999987643
No 37
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=5.1e-38 Score=368.91 Aligned_cols=541 Identities=7% Similarity=-0.036 Sum_probs=375.5
Q ss_pred EEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C------CEEEEEEcccceEEeeecCCccce
Q 040987 45 IFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S------NTVSIFSTSTGLQISSLEGHKAPV 117 (762)
Q Consensus 45 ~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~------~~i~iwd~~~~~~~~~l~~h~~~V 117 (762)
.+|..+. +.|++|+..+++...+.+|...+.+ ++|||||++||+++ + ..|++||+.+++ .+.+..|...+
T Consensus 26 ~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~-~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~ 102 (1045)
T 1k32_A 26 RIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINN-ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKS 102 (1045)
T ss_dssp EEEEEET-TEEEEEETTTCCEEEEECSSSEEEE-EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEE
T ss_pred EEEEEEC-CcEEEEECCCCcEEEeeeCCCcccC-eEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcc
Confidence 4444433 7899999999999999999999997 99999999999885 2 489999998877 67788999988
Q ss_pred -------eEEEEeCCCCcccceeeeEEeeecC------CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCC
Q 040987 118 -------TTVIVVPASTPATKILSYCWTASLD------GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKP 184 (762)
Q Consensus 118 -------~~v~~s~~~~~~~~l~~~l~s~s~d------~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 184 (762)
.+++||||| +++++++.+ ..|.+||+.+++... +..+ +...+.| ++ +
T Consensus 103 ~~~~~~~~~~~~SpDg-------~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~-~~~~~~~--------sp-G-- 162 (1045)
T 1k32_A 103 TGRRMFTDVAGFDPDG-------NLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG-PATHILF--------AD-G-- 162 (1045)
T ss_dssp ETTEECSEEEEECTTC-------CEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC-SCSEEEE--------ET-T--
T ss_pred cccccccccccCCCCC-------EEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC-Ccceeee--------CC-C--
Confidence 999999999 566777754 458888887776533 2222 1122222 11 1
Q ss_pred CceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEc
Q 040987 185 PKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKV 263 (762)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~ 263 (762)
+++... .... ...|.. ..+. ....+|....+... ..+.+|...+.+++|+++ ++++++ .++.+.||.+
T Consensus 163 --~l~~~~-~~~~-~~~~~~---~~g~--~~~~lw~~~~~~~~-~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 163 --RRVIGR-NTFE-LPHWKG---YRGG--TRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp --EEEEEE-SCSC-CTTSTT---CCST--TCCEEEEEEETTEE-EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred --EEEEec-cCCC-cccccc---ccCC--CcCCEEEECCCCCe-EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 122111 0000 000000 1223 34455543333333 344889999999999998 444444 5678888876
Q ss_pred cCc-hhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc
Q 040987 264 PDV-EAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD 342 (762)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (762)
... ... ..+..|. .+...+|+|||++|+++ .++.|++|++...+.. ..... .
T Consensus 232 ~~~g~~~-----~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~-------------------~ 284 (1045)
T 1k32_A 232 DLDGKDL-----RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIG-------------------D 284 (1045)
T ss_dssp ETTSCSC-----EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCC-------------------C
T ss_pred eCCCCcc-----eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccC-------------------c
Confidence 532 211 2333443 46778999999999887 5899999998433211 10000 0
Q ss_pred cccceeeeccccceeEEEEe-cCCCEEEEEecCCeEEEEecCCCceeccCCCCC-CeEEEEeCCCCCeEEEEecCCcEE-
Q 040987 343 ADLCTTWHWHPSEVSVLIFS-SDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS-PLLYFTESPDPSLSSISCADNQVH- 419 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~- 419 (762)
......+..|...+.+++|+ |||++|++++ ++.+++|+..+++...+..+.. .+..++|+ ||+.+++++.++.+.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~ 362 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLG 362 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEE
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEE
Confidence 00011223466779999999 9999999887 7899999999888777777777 89999999 999999988888888
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
+|++.+++... +.++. ..+..++|+|||++|++++.++.|++||+.+++....... + ..
T Consensus 363 ~~d~~~~~~~~-l~~~~----------~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~----~------~~ 421 (1045)
T 1k32_A 363 IYDYRTGKAEK-FEENL----------GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS----R------EA 421 (1045)
T ss_dssp EEETTTCCEEE-CCCCC----------CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----S------SS
T ss_pred EEECCCCCceE-ecCCc----------cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC----C------CC
Confidence 99998776543 33443 6789999999999999999999999999998865443321 1 45
Q ss_pred eEEEEEEecCCCeEEEEeeec--cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 500 VVTLVALSQDGSLMSTVDIKL--AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
.+..++|+|||++|++++.+. +. ....++.|++||+.+++ ...+ ..| ...+..++|+|||++|++++.++
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~-~~~~~~~i~l~d~~~g~-~~~l-----~~~-~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGET-DGYVMQAIHVYDMEGRK-IFAA-----TTE-NSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTT-CSCCEEEEEEEETTTTE-EEEC-----SCS-SSBEEEEEECTTSCEEEEEESCC
T ss_pred CccceEECCCCCeEEEEecCccccc-cCCCCCeEEEEECCCCc-EEEe-----eCC-CcccCCceEcCCCCEEEEEeccc
Confidence 678899999999999887320 00 00134699999999875 3222 456 67788999999999999999888
Q ss_pred cEEEEEccccccccc---------ccC-------------------Cce----eeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 578 DFKVWICNDELQQKD---------LQS-------------------SGW----SCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~---------~~~-------------------~~~----~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
...+|+......... +.. ..+ ........+...+..++++|||+++++
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~ 573 (1045)
T 1k32_A 494 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 573 (1045)
T ss_dssp CCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEE
T ss_pred CCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEE
Confidence 777776543221000 000 000 011122345677899999999998875
Q ss_pred ------------E-c-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 626 ------------A-A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 626 ------------~-~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
. . ...|++||+.+++..... ..+..++|||||++|++++.|+ |++||+.+++
T Consensus 574 ~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~~---i~~~d~~~~~ 639 (1045)
T 1k32_A 574 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDDG---KIYTFPLEKP 639 (1045)
T ss_dssp CCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETTS---CEEEEESSCT
T ss_pred ecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCCc---EEEEeCccCc
Confidence 1 1 457899999988754332 5588999999999999998874 9999999887
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.7e-39 Score=330.14 Aligned_cols=321 Identities=14% Similarity=0.203 Sum_probs=271.2
Q ss_pred cCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 234 EMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
+.+.+.+++|+|||++++++ .++.+.+|........ ....+|...|.+++|+|++++|++++ ||.|++|++.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-----INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE-----EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc-----ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCC
Confidence 45678999999999999855 4555555544443321 33447999999999999999999998 99999999976
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeee--ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH--WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--- 387 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--- 387 (762)
++... ....+. +|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 82 ~~~~~---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 134 (337)
T 1gxr_A 82 PGNKS---------------------------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp TTCCS---------------------------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred CCcee---------------------------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee
Confidence 54221 122333 6889999999999999999999999999999998873
Q ss_pred eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 388 KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 388 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.....+...+.+++|+|+++++++++.++.|++||+.+++....+..|. ..+.+++|+|+++++++++.|
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT----------DGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTSSEEEEEETT
T ss_pred eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc----------CceEEEEECCCCCEEEEEecC
Confidence 3456678889999999999999999999999999999999999998876 789999999999999999999
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
+.|++||+.+++....+.. ...+.+++|+|+++++++++ .++.|++||+.+.+.. .
T Consensus 205 g~i~~~d~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~~~---------~~~~i~~~~~~~~~~~-~--- 260 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHDF-----------TSQIFSLGYCPTGEWLAVGM---------ESSNVEVLHVNKPDKY-Q--- 260 (337)
T ss_dssp SEEEEEETTTTEEEEEEEC-----------SSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTSSCEE-E---
T ss_pred CcEEEEECCCCceEeeecC-----------CCceEEEEECCCCCEEEEEc---------CCCcEEEEECCCCCeE-E---
Confidence 9999999998876655432 55699999999999999998 8899999999987642 2
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
...| ...|.+++|+|++++|++++.||.|++||+.+++..... .|...+.+++|+|++++|++++
T Consensus 261 --~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 261 --LHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------------KESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp --ECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------------ECSSCEEEEEECTTSCEEEEEE
T ss_pred --EcCC-ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe------------cCCCcEEEEEECCCCCEEEEec
Confidence 3577 889999999999999999999999999999987765333 3678999999999999999998
Q ss_pred -CCeEEEEeC
Q 040987 628 -ETVITLWDP 636 (762)
Q Consensus 628 -d~~i~iwd~ 636 (762)
||.|++|++
T Consensus 326 ~dg~i~iw~~ 335 (337)
T 1gxr_A 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 999999996
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.1e-39 Score=328.78 Aligned_cols=292 Identities=14% Similarity=0.197 Sum_probs=242.9
Q ss_pred cceeeeccccceeEEEE-----ec-CCCEEEEEecCCeEEEEecCCCc-------e-eccCCCCCCeEEEEeCCCCCeEE
Q 040987 345 LCTTWHWHPSEVSVLIF-----SS-DGAYLYSGGKEGVLVVWQLDTGK-------K-KFLPRIGSPLLYFTESPDPSLSS 410 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~-----s~-~g~~l~s~~~dg~i~~wd~~~~~-------~-~~~~~~~~~v~~~~~s~~~~~l~ 410 (762)
....+.+|.+.|++++| ++ ++++|++++.|++|++||+.+.+ . ..+..|...|.+++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 45688999999999999 76 89999999999999999997643 1 34677889999999999999999
Q ss_pred EEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeeccc
Q 040987 411 ISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 411 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
+++.|+.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.... .... .
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~----------~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~----~- 156 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQ----------SEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSS----A- 156 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCC----------SCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEEC----C-
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCC----------CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeee----e-
Confidence 99999999999999999999999887 789999999999999999999999999997332 1111 0
Q ss_pred ccCCCCcceeEEEEEEecCC----------CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEE
Q 040987 491 HQPGDDVTVVVTLVALSQDG----------SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISA 560 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g----------~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~ 560 (762)
....|...+.+++|+|++ .+|++++ .|+.|++||.. ...... +.+| ...|.+
T Consensus 157 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~-~~~~~~-----~~~h-~~~v~~ 218 (343)
T 2xzm_R 157 --EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG---------WDGRLKVWNTN-FQIRYT-----FKAH-ESNVNH 218 (343)
T ss_dssp --TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE---------TTSEEEEEETT-TEEEEE-----EECC-SSCEEE
T ss_pred --cccCCCceeeeeeeccccccccccCCCCCEEEEEc---------CCCEEEEEcCC-CceeEE-----EcCc-cccceE
Confidence 011236779999999987 7899998 89999999943 322222 3678 889999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEcccccc-cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCC
Q 040987 561 VAFHPNRRAAVSSSYGGDFKVWICNDELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRN 639 (762)
Q Consensus 561 ~~~spd~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~ 639 (762)
++|+|+|++|++++.|+.|++||+..... ...+ .+...|.+++|+|++++++++.|+.|++||+.++
T Consensus 219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~------------~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQREF------------DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQ 286 (343)
T ss_dssp EEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE------------ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcccceee------------cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCC
Confidence 99999999999999999999999954322 2111 1356799999999999998888999999999887
Q ss_pred eEEE--Eec-----------cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 640 VLVA--VIG-----------ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 640 ~~~~--~l~-----------~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+... .+. +|...|.+++|+|+|++|++++.||. |++|++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~--v~~w~~~~g~ 342 (343)
T 2xzm_R 287 SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV--IRTFSFETSA 342 (343)
T ss_dssp CSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE--EEEEEEEEEE
T ss_pred CCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce--EEEEEEEccC
Confidence 6443 333 67788999999999999999999998 9999987653
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=321.16 Aligned_cols=302 Identities=15% Similarity=0.228 Sum_probs=235.3
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--e-cc-CC-CCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--K-FL-PR-IGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--~-~~-~~-~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
+++..+.+|...|.+++|+++ +|++++.|++|++||+.++.. . .+ .. |...|.+++|+|++++|++++.|+.|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 356788999999999999987 999999999999999987532 2 22 33 88899999999999999999999999
Q ss_pred EEEEcCC-------ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 419 HLLKMPS-------MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 419 ~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
++||+.. .+.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+...............|
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~----------~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHE----------NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp EEEEC-------CCCEEEEEEC--------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred EEEEcccCcCccccceeEEEEcCCC----------CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence 9999853 45667777776 789999999999999999999999999995432222222222333
Q ss_pred cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC--CCe
Q 040987 492 QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN--RRA 569 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd--~~~ 569 (762)
...|.+++|+|++++|++++ .|++|++||..++.... + ..+.+| ...|.+++|+|+ +.+
T Consensus 153 ------~~~v~~v~~~p~~~~l~s~s---------~D~~i~iW~~~~~~~~~-~--~~~~~h-~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 153 ------SQDVKHVIWHPSEALLASSS---------YDDTVRIWKDYDDDWEC-V--AVLNGH-EGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp ------SSCEEEEEECSSSSEEEEEE---------TTSCEEEEEEETTEEEE-E--EEECCC-SSCEEEEEECCSSSSCE
T ss_pred ------CCceEEEEECCCCCEEEEEc---------CCCeEEEEECCCCCeeE-E--EEccCC-CCcEEEEEecCCCCeeE
Confidence 67899999999999999999 89999999987653111 1 124789 899999999998 678
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeeccc-CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe--EEE-E
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY-KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV--LVA-V 644 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~--~~~-~ 644 (762)
|++++.|++|++||+.++..... ..|.+...... |...|.+++|++++ +|++++ |+.|++||..+++ .+. .
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQ---QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSC---EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCcccc---ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 99999999999999976543211 13344444443 88999999999776 677776 9999999998874 333 3
Q ss_pred eccccC-ceeEEEEeC--CCCEEEEEEcCCCCeEEEEECCC
Q 040987 645 IGETLT-PIMNMSFVG--SSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 645 l~~~~~-~v~~~~~s~--dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.+|.. .|.+++|+| ++++|++++.|+. |++||+++
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~--v~~W~~~~ 328 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATGGDDGI--VNFWSLEK 328 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEEETTSE--EEEEEC--
T ss_pred ccccccceEEEEEEecCCCceEEEEecCCCc--EEEEEecc
Confidence 356876 899999999 7999999999998 99999875
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4e-38 Score=322.16 Aligned_cols=251 Identities=13% Similarity=0.131 Sum_probs=207.0
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|...|.+++|+|++.+|++++.|+.|++||+.+++ .+..+.+|..
T Consensus 70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~------------------------------~~~~~~~h~~ 119 (343)
T 2xzm_R 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT------------------------------TYKRFVGHQS 119 (343)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC------------------------------EEEEEECCCS
T ss_pred chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc------------------------------EEEEEcCCCC
Confidence 3456899999999999999999999999999999997764 3467889999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc---CCCCCCeEEEEeCCCC----------CeEEEEecCCcEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL---PRIGSPLLYFTESPDP----------SLSSISCADNQVHLL 421 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~v~~~~~s~~~----------~~l~~~~~d~~i~i~ 421 (762)
.|.+++|+|++++|++++.|++|++||+........ ..+...+.+++|+|++ .++++++.|+.|++|
T Consensus 120 ~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 999999999999999999999999999985443332 3677889999999987 789999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCccee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~ 500 (762)
|. ..+....+.+|. ..|.+++|+|++++|++++.|+.|++||+..... ...+.. ...
T Consensus 200 d~-~~~~~~~~~~h~----------~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-----------~~~ 257 (343)
T 2xzm_R 200 NT-NFQIRYTFKAHE----------SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA-----------GST 257 (343)
T ss_dssp ET-TTEEEEEEECCS----------SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC-----------SSC
T ss_pred cC-CCceeEEEcCcc----------ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC-----------CCc
Confidence 94 467777788876 7899999999999999999999999999954432 222211 345
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--EEEEE------eecCCCCCceEEEEEcCCCCeEEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF--TLSTI------VYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~------~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
|.+++|+|++++++++ .|+.|++|++.+.+... .+... ...+| ...|.+++|+|+|++|++
T Consensus 258 v~~v~~sp~~~~la~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG----------TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp EEEEEECSSSCEEEEE----------ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEEEEECSSSCCEEE
T ss_pred EEEEEECCCCCEEEEE----------CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEEEEECCCCCeEEE
Confidence 9999999999988766 45679999998876543 22110 01257 778999999999999999
Q ss_pred EeCCCcEEEEEccccc
Q 040987 573 SSYGGDFKVWICNDEL 588 (762)
Q Consensus 573 ~~~dg~i~iwd~~~~~ 588 (762)
|+.||.|++|++.++.
T Consensus 327 g~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 327 GFTDGVIRTFSFETSA 342 (343)
T ss_dssp EETTSEEEEEEEEEEE
T ss_pred ecCCceEEEEEEEccC
Confidence 9999999999997653
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.9e-38 Score=317.47 Aligned_cols=289 Identities=19% Similarity=0.257 Sum_probs=249.1
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
....+.+|.+.|.+ ++|+|+|++||+++ |+.|+|||+.+++....+.+|...|.+++|+|++ .+|++++.|
T Consensus 15 ~~~~~~gh~~~v~~-~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~l~s~~~d 86 (312)
T 4ery_A 15 LKFTLAGHTKAVSS-VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-------NLLVSASDD 86 (312)
T ss_dssp EEEEECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-------SEEEEEETT
T ss_pred eEEEEcccCCcEEE-EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-------CEEEEECCC
Confidence 34567899999997 99999999999999 7999999999999999999999999999999999 688999999
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
++|++||+.+++++..+.
T Consensus 87 ~~i~vwd~~~~~~~~~~~-------------------------------------------------------------- 104 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLK-------------------------------------------------------------- 104 (312)
T ss_dssp SEEEEEETTTCCEEEEEE--------------------------------------------------------------
T ss_pred CEEEEEECCCCcEEEEEc--------------------------------------------------------------
Confidence 999999999988766544
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV 301 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 301 (762)
+|...|.+++|+|++++|+++ .|+.|++||+.+++.. ..+..|...|.+++|+|++++|++++.
T Consensus 105 ----------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 105 ----------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL-----KTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp ----------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ----------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE-----EEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 345677889999999999855 7999999999988754 566789999999999999999999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
||.|++||+.+++.+. .....+...+..++|+|++++|++++.|+.|++||
T Consensus 170 d~~i~~wd~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 170 DGLCRIWDTASGQCLK-----------------------------TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp TSCEEEEETTTCCEEE-----------------------------EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred CCcEEEEECCCCceee-----------------------------EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 9999999997765432 22344667899999999999999999999999999
Q ss_pred cCCCceec-cCCCCCC---eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 382 LDTGKKKF-LPRIGSP---LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 382 ~~~~~~~~-~~~~~~~---v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+.+++... +..+... +......+++.++++++.|+.|++||+.+++.+..+.+|. ..|.+++|+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~----------~~v~~~~~~p~ 290 (312)
T 4ery_A 221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT----------DVVISTACHPT 290 (312)
T ss_dssp TTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS----------SCEEEEEECSS
T ss_pred CCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC----------CcEEEEeecCc
Confidence 99988653 3344332 2333345688999999999999999999999999999887 78999999999
Q ss_pred CCEEEEee--cCceEEEEEcC
Q 040987 458 GGLVALRA--ENYCIHFYSLL 476 (762)
Q Consensus 458 ~~~l~~~~--~dg~i~i~d~~ 476 (762)
++++++++ .|+.|++|+..
T Consensus 291 ~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 291 ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSEEEEEECTTTCCEEEEECC
T ss_pred CCceEEEEccCCccEEEecCC
Confidence 99999987 69999999863
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.6e-38 Score=316.06 Aligned_cols=291 Identities=16% Similarity=0.272 Sum_probs=253.1
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
.....+.+|...|.+++|+|++++|++++.|+.|++|+..+++.. .+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 455778899999999999999999999999999999999988774 4667888999999999999999999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.. | ...+.
T Consensus 94 ~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~------~~~v~ 153 (312)
T 4ery_A 94 VSSGKCLKTLKGHS----------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA----H------SDPVS 153 (312)
T ss_dssp TTTCCEEEEEECCS----------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC----C------SSCEE
T ss_pred CCCCcEEEEEcCCC----------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC----C------CCcEE
Confidence 99999999998887 7899999999999999999999999999998876655432 2 56799
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
+++|+|++++|++++ .|+.|++||+.+++....+. ..+ ...+..++|+|++++|++++.|+.|++|
T Consensus 154 ~~~~~~~~~~l~~~~---------~d~~i~~wd~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 154 AVHFNRDGSLIVSSS---------YDGLCRIWDTASGQCLKTLI----DDD-NPPVSFVKFSPNGKYILAATLDNTLKLW 219 (312)
T ss_dssp EEEECTTSSEEEEEE---------TTSCEEEEETTTCCEEEEEC----CSS-CCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEEEcCCCCEEEEEe---------CCCcEEEEECCCCceeeEEe----ccC-CCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 999999999999999 88999999999887655442 345 6789999999999999999999999999
Q ss_pred EcccccccccccCCceeeeeecccCCCC---eEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKA---MTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
|+.+++....+. .|... +......+++++|++|+ |+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 220 d~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 220 DYSKGKCLKTYT-----------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 288 (312)
T ss_dssp ETTTTEEEEEEC-----------SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred ECCCCcEEEEEE-----------ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec
Confidence 999877655442 23322 22333346889999998 9999999999999999999999999999999
Q ss_pred CCCCEEEEEE--cCCCCeEEEEECC
Q 040987 659 GSSEYLVATS--WGSKPQLSVWNMS 681 (762)
Q Consensus 659 ~dg~~l~s~~--~d~~~~v~vwd~~ 681 (762)
|++++|++++ .|+. |++|+.+
T Consensus 289 p~~~~l~s~~~~~d~~--i~~W~~d 311 (312)
T 4ery_A 289 PTENIIASAALENDKT--IKLWKSD 311 (312)
T ss_dssp SSSSEEEEEECTTTCC--EEEEECC
T ss_pred CcCCceEEEEccCCcc--EEEecCC
Confidence 9999999998 5777 9999865
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-40 Score=348.17 Aligned_cols=336 Identities=11% Similarity=0.120 Sum_probs=271.4
Q ss_pred CcCeEEEEEcCCCc-EEEEe----------ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceee
Q 040987 281 TKKLTVLAFHPTQR-IVAAG----------DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW 349 (762)
Q Consensus 281 ~~~v~~~~~sp~~~-~l~~~----------~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (762)
...|.+++|+|+++ +|+++ +.|+.|++|++.++.... ++..
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~---------------------------~~~~- 63 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK---------------------------PIAS- 63 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS---------------------------CSCC-
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc---------------------------EEEE-
Confidence 34688999999987 99999 889999999997653211 1122
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCC----C-ceeccCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEc
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT----G-KKKFLPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKM 423 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~----~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~ 423 (762)
..|...|.+++|+|++++|++++.|+.|++||+.+ . ....+..|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 24888999999999999999999999999999988 2 33456778899999999998 899999999999999999
Q ss_pred CCce------EEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 424 PSME------IIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 424 ~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.+++ ....+. ....|...+.+++|+|+ +.++++++.|+.|++||+.+++.+..+... .....
T Consensus 144 ~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~ 212 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPG-------QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT----SPNSG 212 (416)
T ss_dssp TTTSSCTTTCCCBCCC-------CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC----CCSSC
T ss_pred CCCccccccccccccc-------cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc----ccccc
Confidence 9875 222221 11123478999999999 789999999999999999988766554332 11122
Q ss_pred cceeEEEEEEecCC-CeEEEEeeeccccCCCcee---EEEEEEecCCC-ceeEEEEEeec-CCCCCceEEEEEcC-CCCe
Q 040987 497 VTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLV---CLKFWVSGTQN-KEFTLSTIVYE-PHRDAGISAVAFHP-NRRA 569 (762)
Q Consensus 497 ~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~---~i~iwd~~~~~-~~~~~~~~~~~-~h~~~~v~~~~~sp-d~~~ 569 (762)
|...+.+++|+|++ .++++++ .++ .|++||+++.. ....+ . +| ...|.+++|+| ++++
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~---------~d~~~~~i~~~d~~~~~~~~~~~-----~~~~-~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATAT---------GSDNDPSILIWDLRNANTPLQTL-----NQGH-QKGILSLDWCHQDEHL 277 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEE---------CCSSSCCCCEEETTSTTSCSBCC-----CSCC-SSCEEEEEECSSCSSC
T ss_pred cCCceEEEEECCCCCCEEEEEE---------CCCCCceEEEEeCCCCCCCcEEe-----ecCc-cCceeEEEeCCCCCCe
Confidence 25679999999997 5788887 677 99999999864 33322 4 68 88999999999 9999
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCCeEEEEec-
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRNVLVAVIG- 646 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~~~~~~l~- 646 (762)
|++++.|+.|++||+.+++....+ ..|...|++++|+|++ ++|++++ |+.|++||+.+++......
T Consensus 278 l~s~~~dg~v~~wd~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 346 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPESAEQLSQF-----------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQE 346 (416)
T ss_dssp EEEEESSSEEEEECSSSCCEEEEE-----------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--
T ss_pred EEEEeCCCCEEEeeCCCCccceee-----------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccc
Confidence 999999999999999987665544 3678899999999999 8999998 9999999998765332221
Q ss_pred ----------------------------------cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 647 ----------------------------------ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 647 ----------------------------------~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.|..++.+++|+|||++|++++.|+. |++|++.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~--v~~w~~~~~ 415 (416)
T 2pm9_A 347 TETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKG--VSITNPKIS 415 (416)
T ss_dssp --------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSC--BCCBCCCCC
T ss_pred ccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCe--EEEEEeccC
Confidence 15677889999999999999999998 999999875
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7e-38 Score=326.58 Aligned_cols=313 Identities=17% Similarity=0.219 Sum_probs=251.1
Q ss_pred cEEEEecCCccccc---eeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeecc-----------
Q 040987 215 RICKCNLTESRLAG---GVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHH----------- 280 (762)
Q Consensus 215 ~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~----------- 280 (762)
...+|+....+... .....|...|.+++|+|||++||++.++.+++|++.+++.. ..+..|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~-----~~l~~~~~~~~~~~~~~ 115 (393)
T 1erj_A 41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLV-----ARLSDDSAANKDPENLN 115 (393)
T ss_dssp CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEE-----EEECC------------
T ss_pred eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEE-----EEecCcccccccccccc
Confidence 34467665544331 12346999999999999999999998999999999988753 222222
Q ss_pred -------CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 281 -------TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 281 -------~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
...|.+++|+|++++|++|+.|+.|++||+.+++ .+..+.+|.
T Consensus 116 ~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~------------------------------~~~~~~~h~ 165 (393)
T 1erj_A 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK------------------------------IVMILQGHE 165 (393)
T ss_dssp -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE------------------------------EEEEECCCS
T ss_pred ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc------------------------------EEEEEccCC
Confidence 2349999999999999999999999999997663 346788999
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
..|.+++|+|++++|++++.|++|++||+++++......+...+.+++++| +++++++++.|+.|++||+.+++.+..+
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~ 245 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence 999999999999999999999999999999998876666778899999999 8999999999999999999999888776
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE--------EeecccccCCCCcceeEEEE
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV--------QVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~ 504 (762)
..... ....|...|.+++|+|++++|++++.|+.|++||+.+....... .....+ |...|.++
T Consensus 246 ~~~~~---~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~ 316 (393)
T 1erj_A 246 DSENE---SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG------HKDFVLSV 316 (393)
T ss_dssp C---------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC------CSSCEEEE
T ss_pred ccccc---CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec------ccCcEEEE
Confidence 32110 01123478999999999999999999999999999765432111 111122 26779999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC------CCCeEEEEeCCCc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP------NRRAAVSSSYGGD 578 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp------d~~~l~~~~~dg~ 578 (762)
+|+|++++|++++ .|+.|++||..+++....+ .+| ...|.+++|++ ++++|++++.||+
T Consensus 317 ~~~~~~~~l~sgs---------~D~~v~iwd~~~~~~~~~l-----~~h-~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~ 381 (393)
T 1erj_A 317 ATTQNDEYILSGS---------KDRGVLFWDKKSGNPLLML-----QGH-RNSVISVAVANGSSLGPEYNVFATGSGDCK 381 (393)
T ss_dssp EECGGGCEEEEEE---------TTSEEEEEETTTCCEEEEE-----ECC-SSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred EECCCCCEEEEEe---------CCCeEEEEECCCCeEEEEE-----CCC-CCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence 9999999999999 8999999999998776554 578 88999999986 6889999999999
Q ss_pred EEEEEccc
Q 040987 579 FKVWICND 586 (762)
Q Consensus 579 i~iwd~~~ 586 (762)
|++|++..
T Consensus 382 i~iW~~~~ 389 (393)
T 1erj_A 382 ARIWKYKK 389 (393)
T ss_dssp EEEEEEEE
T ss_pred EEECcccc
Confidence 99999864
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=343.90 Aligned_cols=346 Identities=12% Similarity=0.175 Sum_probs=277.0
Q ss_pred CCceEEEECCCCC-EEEEE-----------eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCC
Q 040987 236 KEPQVITISSSGK-YFGIR-----------KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303 (762)
Q Consensus 236 ~~v~~~~~spdg~-~la~~-----------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 303 (762)
..+.+++|+|+|+ +|+++ .|+.|++||+.+++.. .. .....|...|.+++|+|++++|++++.||
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--KP-IASLQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--SC-SCCCCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--cE-EEEEecCCceEEEEECCCCCeEEEEccCC
Confidence 4577889999997 77765 6889999999987632 11 22336889999999999999999999999
Q ss_pred eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEec
Q 040987 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQL 382 (762)
Q Consensus 304 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~ 382 (762)
.|++|++..... .......+.+|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 90 ~v~vw~~~~~~~--------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 90 SLELYSTNEANN--------------------------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CEEEECCSSTTS--------------------------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred eEEEeecccccc--------------------------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 999999865210 01245677889999999999998 899999999999999999
Q ss_pred CCCc------eec----cCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 383 DTGK------KKF----LPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 383 ~~~~------~~~----~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.+++ ... ...+...+.+++|+|+ +.++++++.|+.|++||+.+++.+..+..+... ..+...+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~~~v~~ 219 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN----SGIKQQLSV 219 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS----SCCCCCEEE
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc----cccCCceEE
Confidence 9886 322 3467789999999999 789999999999999999999998888765311 111378999
Q ss_pred EEEeCCC-CEEEEeecCc---eEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCC
Q 040987 452 IAFNHDG-GLVALRAENY---CIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 452 ~~~s~~~-~~l~~~~~dg---~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~ 525 (762)
++|+|++ .++++++.|+ .|++||+.++. ....+. .. |...+.+++|+| ++++|++++
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~---~~------~~~~v~~~~~s~~~~~~l~s~~-------- 282 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN---QG------HQKGILSLDWCHQDEHLLLSSG-------- 282 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC---SC------CSSCEEEEEECSSCSSCEEEEE--------
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee---cC------ccCceeEEEeCCCCCCeEEEEe--------
Confidence 9999997 6899999998 99999998863 332221 01 267899999999 999999999
Q ss_pred CceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC-CeEEEEeCCCcEEEEEcccccccccccC---------
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR-RAAVSSSYGGDFKVWICNDELQQKDLQS--------- 595 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------- 595 (762)
.|+.|++||+.+++....+ .+| ...|.+++|+|++ .+|++++.|+.|++||+.+.........
T Consensus 283 -~dg~v~~wd~~~~~~~~~~-----~~~-~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 355 (416)
T 2pm9_A 283 -RDNTVLLWNPESAEQLSQF-----PAR-GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESE 355 (416)
T ss_dssp -SSSEEEEECSSSCCEEEEE-----ECS-SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------
T ss_pred -CCCCEEEeeCCCCccceee-----cCC-CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCc
Confidence 8899999999998776655 467 8899999999999 8999999999999999988765433210
Q ss_pred ----------------CceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 596 ----------------SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 596 ----------------~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
..+.. .....+...+.+++|+|||++|++++ |+.|+||++.+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 356 TDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -----------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 00000 11222567888999999999999998 999999999864
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.5e-38 Score=331.49 Aligned_cols=349 Identities=13% Similarity=0.092 Sum_probs=279.5
Q ss_pred ccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 75 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 75 v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
+++ ++|+|+|++|++++ |+.|++||+.+++....+..| ..+....|+|++ .+|++++.|+.|++||+.++
T Consensus 59 ~~~-~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~l~~~~~dg~i~iwd~~~~ 129 (420)
T 3vl1_A 59 GKG-NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQM-------RRFILGTTEGDIKVLDSNFN 129 (420)
T ss_dssp CTT-CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSS-------CEEEEEETTSCEEEECTTSC
T ss_pred ccc-eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCC-------CEEEEEECCCCEEEEeCCCc
Confidence 445 99999999999999 899999999999888888877 445666789999 68899999999999999877
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
+.... ...
T Consensus 130 ~~~~~------------------------------------------------------------------------~~~ 137 (420)
T 3vl1_A 130 LQREI------------------------------------------------------------------------DQA 137 (420)
T ss_dssp EEEEE------------------------------------------------------------------------TTS
T ss_pred ceeee------------------------------------------------------------------------ccc
Confidence 65432 234
Q ss_pred cCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 234 EMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
|...|.+++|+|++++|+++ .|+.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 212 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-----RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-----EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-----eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence 67889999999999999855 7899999999988765 56678999999999999999999999999999999987
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR 392 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~ 392 (762)
++.... ......|...+.+++|.+++... ....
T Consensus 213 ~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~~--------------------~~~~ 245 (420)
T 3vl1_A 213 GTTIHT---------------------------FNRKENPHDGVNSIALFVGTDRQ--------------------LHEI 245 (420)
T ss_dssp TEEEEE---------------------------ECBTTBTTCCEEEEEEEECCCSS--------------------CGGG
T ss_pred CceeEE---------------------------eecCCCCCCCccEEEEecCCcce--------------------eeec
Confidence 754321 11122467788888887764322 1223
Q ss_pred CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc-CCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceE
Q 040987 393 IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG-IKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCI 470 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i 470 (762)
+...+.+++|+|++++|++++.|+.|++||+.+++....+.. |. ..+.+++|+|+++ +|++++.||.|
T Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT----------CSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS----------SCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC----------CCceeEEEeCCCCCEEEEEeCCCeE
Confidence 446678899999999999999999999999999887777654 33 7899999999999 99999999999
Q ss_pred EEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEE---
Q 040987 471 HFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS--- 546 (762)
Q Consensus 471 ~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--- 546 (762)
++||+.+++. +..+... + ...+.++.+ +++++|++++ .|+.|++|++........+.
T Consensus 316 ~vwd~~~~~~~~~~~~~~---~------~~~v~~~~~-~~~~~l~s~~---------~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLIN---E------GTPINNVYF-AAGALFVSSG---------FDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp EEEETTCTTSCSEEEEES---T------TSCEEEEEE-ETTEEEEEET---------TTEEEEEEEECCTTCCSCEECTT
T ss_pred EEEEcCCCcCchhhhhcc---C------CCCceEEEe-CCCCEEEEec---------CCccEEEEeccCCCCCccceecc
Confidence 9999998754 4444321 1 456888854 5788999998 89999999998753322111
Q ss_pred -EEeecCCCCCceEEEEEcCCCC---eEEEEeCCCcEEEEEccc
Q 040987 547 -TIVYEPHRDAGISAVAFHPNRR---AAVSSSYGGDFKVWICND 586 (762)
Q Consensus 547 -~~~~~~h~~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~ 586 (762)
.....+| ...|.+++|+|+++ .+++++.+|.+.+|++.+
T Consensus 377 ~~~~~~~~-~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 377 TPTFLVSN-DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEEECCS-SCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccEEccC-CcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 1123567 88999999999999 777788899999999864
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.8e-39 Score=337.77 Aligned_cols=345 Identities=12% Similarity=0.083 Sum_probs=281.1
Q ss_pred CceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCce
Q 040987 237 EPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT 315 (762)
Q Consensus 237 ~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~ 315 (762)
.+.+++|+|+|++|++ +.|+.+++||+.+++.. .....| ..+....|+|++++|++|+.||.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccccee-----eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence 3457899999999985 47999999999988764 333344 4455557899999999999999999999876532
Q ss_pred eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCC
Q 040987 316 FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIG 394 (762)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~ 394 (762)
...+.+|...|.+++|+|++++|++++.|+.|++||+.+++.. .+..|.
T Consensus 132 ------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 181 (420)
T 3vl1_A 132 ------------------------------REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR 181 (420)
T ss_dssp ------------------------------EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS
T ss_pred ------------------------------eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC
Confidence 3566789999999999999999999999999999999988764 456788
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
..|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.... ..+.++++.|++...+ +
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~----------~- 243 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH-------DGVNSIALFVGTDRQL----------H- 243 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTT-------CCEEEEEEEECCCSSC----------G-
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCC-------CCccEEEEecCCccee----------e-
Confidence 999999999999999999999999999999999999988765332 6788888877643320 0
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
..+ ...+.+++|+|++++|++++ .|+.|++||+.+++....+. .+|
T Consensus 244 --------------~~~------~~~v~~~~~s~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~----~~~- 289 (420)
T 3vl1_A 244 --------------EIS------TSKKNNLEFGTYGKYVIAGH---------VSGVITVHNVFSKEQTIQLP----SKF- 289 (420)
T ss_dssp --------------GGC------CCCCCTTCSSCTTEEEEEEE---------TTSCEEEEETTTCCEEEEEC----CTT-
T ss_pred --------------ecc------cCcccceEEcCCCCEEEEEc---------CCCeEEEEECCCCceeEEcc----ccc-
Confidence 000 44577889999999999999 88999999999887665552 467
Q ss_pred CCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccc-cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeE
Q 040987 555 DAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVI 631 (762)
Q Consensus 555 ~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i 631 (762)
...|.+++|+|+++ +|++++.||.|++||+.++.. ...+ ...|...|+++.+ +++++|++++ |+.|
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~----------~~~~~~~v~~~~~-~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF----------LINEGTPINNVYF-AAGALFVSSGFDTSI 358 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----------EESTTSCEEEEEE-ETTEEEEEETTTEEE
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh----------hccCCCCceEEEe-CCCCEEEEecCCccE
Confidence 88999999999999 999999999999999988754 2222 1235677888855 5788999998 9999
Q ss_pred EEEeCCCC---------eEEEEeccccCceeEEEEeCCCC---EEEEEEcCCCCeEEEEECCC
Q 040987 632 TLWDPDRN---------VLVAVIGETLTPIMNMSFVGSSE---YLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 632 ~iwd~~~~---------~~~~~l~~~~~~v~~~~~s~dg~---~l~s~~~d~~~~v~vwd~~~ 682 (762)
++|++... .....+.+|...|.+++|+||++ .|++++.+|. +.+|++++
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~--~~~~~~~~ 419 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNF--CALYNLSN 419 (420)
T ss_dssp EEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTE--EEEEESCC
T ss_pred EEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCce--EEEEeccC
Confidence 99998863 12224557888999999999999 7888888887 99999875
No 49
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=315.55 Aligned_cols=297 Identities=18% Similarity=0.244 Sum_probs=229.2
Q ss_pred eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc--eEEeee-cC-CccceeEEEEeCCCCcccceeeeEEee
Q 040987 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSL-EG-HKAPVTTVIVVPASTPATKILSYCWTA 139 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~--~~~~~l-~~-h~~~V~~v~~s~~~~~~~~l~~~l~s~ 139 (762)
...+.+|.+.|.+ ++|+|+ +||+++ |++|+|||++++ +.+..+ .+ |...|.+++|+|++ .+|+++
T Consensus 7 ~~~~~~h~~~v~~-~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-------~~las~ 76 (330)
T 2hes_X 7 IKSLKLYKEKIWS-FDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-------SLLAAG 76 (330)
T ss_dssp EEEEECCSSCEEE-EEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-------SEEEEE
T ss_pred ceeeccCCCceee-eccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-------CEEEEE
Confidence 3467899999997 999998 999998 799999999875 456666 45 99999999999999 689999
Q ss_pred ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 140 s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+.|++|+|||+..+.... .
T Consensus 77 s~D~~v~iw~~~~~~~~~-~------------------------------------------------------------ 95 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRT-F------------------------------------------------------------ 95 (330)
T ss_dssp ETTSCEEEEEC--------C------------------------------------------------------------
T ss_pred eCCCcEEEEEcccCcCcc-c------------------------------------------------------------
Confidence 999999999986432100 0
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCc-hhhhheeeeeeeccCcCeEEEEEcCCCcEEE
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDV-EAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 297 (762)
..+.. ..+.+|...|.+++|+|+|++||++ .|+.|++||+... ... .....+.+|...|.+++|+|++++|+
T Consensus 96 ---~~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~ 169 (330)
T 2hes_X 96 ---EMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY--ECISVLQEHSQDVKHVIWHPSEALLA 169 (330)
T ss_dssp ---CCEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC--EEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred ---cceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe--EEEEEeccCCCceEEEEECCCCCEEE
Confidence 00000 2445688899999999999999955 6999999999533 211 22356678999999999999999999
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC--CCEEEEEecCC
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD--GAYLYSGGKEG 375 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg 375 (762)
+++.|+.|++||...+. .+++..+.+|...|.+++|+|+ +.+|++++.|+
T Consensus 170 s~s~D~~i~iW~~~~~~----------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 170 SSSYDDTVRIWKDYDDD----------------------------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EEETTSCEEEEEEETTE----------------------------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred EEcCCCeEEEEECCCCC----------------------------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence 99999999999975442 1245678899999999999998 77899999999
Q ss_pred eEEEEecCCCc--------ee-ccCC-CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce--EEEE-EccCCCCCCCC
Q 040987 376 VLVVWQLDTGK--------KK-FLPR-IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME--IIRS-ISGIKLPCPLP 442 (762)
Q Consensus 376 ~i~~wd~~~~~--------~~-~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~--~~~~-~~~~~~~~~~~ 442 (762)
+|++||+.++. .. .+.. |...|.+++|++++ +|++++.|+.|++|+..+++ .... ..+|.
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~------ 294 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG------ 294 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT------
T ss_pred eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc------
Confidence 99999987642 21 2333 78899999999765 88999999999999998764 2322 23443
Q ss_pred CcccC-ceeeEEEeC--CCCEEEEeecCceEEEEEcCC
Q 040987 443 EEYKG-LCRDIAFNH--DGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 443 ~~~~~-~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~ 477 (762)
. .|.+++|+| ++++|++++.||.|++||+..
T Consensus 295 ----~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 ----VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ----TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ----cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4 789999999 789999999999999999864
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-39 Score=343.81 Aligned_cols=355 Identities=11% Similarity=0.001 Sum_probs=249.3
Q ss_pred eeccCCCceEEEECCCC---------CEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec
Q 040987 231 TLAEMKEPQVITISSSG---------KYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV 301 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg---------~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 301 (762)
...+.+.|.+++|+|++ ++||++..... . -..+|+++.+++++.
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~-------------------~~~~~~~~~laS~s~ 181 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D-------------------EPLNEHLEMFDKEKH 181 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------------
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C-------------------CccchhhhhhccCCC
Confidence 34457889999999987 78887642210 0 013689999999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC------CCEEEEEecCC
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD------GAYLYSGGKEG 375 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------g~~l~s~~~dg 375 (762)
|++|+||++.+++... .....+.+|.+.|..++|+|+ +.+|++++.||
T Consensus 182 D~tI~iWd~~~~~~~~--------------------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg 235 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHC--------------------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG 235 (524)
T ss_dssp CEEEEEEEEETTTCCE--------------------------EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS
T ss_pred CceEEEEEccCCCCCc--------------------------eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC
Confidence 9999999986653210 012345678889999999996 57999999999
Q ss_pred eEEEEecCCCcee------------ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc-eEEEEEccCCCCCCCC
Q 040987 376 VLVVWQLDTGKKK------------FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM-EIIRSISGIKLPCPLP 442 (762)
Q Consensus 376 ~i~~wd~~~~~~~------------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~ 442 (762)
+|++||+.++... .+..|...|.+++|++++ .|++|+.||+|++||++++ .+...+.+|.
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~------ 308 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHD------ 308 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSS------
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeeccc------
Confidence 9999999876421 345677899999999864 8999999999999999876 3445577776
Q ss_pred CcccCceeeE--EEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee
Q 040987 443 EEYKGLCRDI--AFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK 519 (762)
Q Consensus 443 ~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 519 (762)
..|.++ +|+|++ ++|++++.|++|++||+++++....+..... ...+.+++|+|+++.+++++
T Consensus 309 ----~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~--------~~~v~~v~fsp~~~~l~s~~-- 374 (524)
T 2j04_B 309 ----SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR--------GSNLVPVVYCPQIYSYIYSD-- 374 (524)
T ss_dssp ----SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS--------CCSCCCEEEETTTTEEEEEC--
T ss_pred ----ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc--------cCcccceEeCCCcCeEEEeC--
Confidence 788998 578887 8999999999999999988776555443211 12378899999999999998
Q ss_pred ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 520 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.|++|++||++++.....+ .+| .+.|++++|+|+|++|++|+.|++|++||+... ......
T Consensus 375 -------~d~tv~lwd~~~~~~~~~l-----~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~----- 435 (524)
T 2j04_B 375 -------GASSLRAVPSRAAFAVHPL-----VSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIK----- 435 (524)
T ss_dssp -------SSSEEEEEETTCTTCCEEE-----EEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------
T ss_pred -------CCCcEEEEECcccccceee-----ecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccc-----
Confidence 8889999999988776554 468 899999999999999999999999999998654 211110
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC-CCeEEEEeccccCceeEEEEeCCC---CEEEEEEcCCCCeE
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD-RNVLVAVIGETLTPIMNMSFVGSS---EYLVATSWGSKPQL 675 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~-~~~~~~~l~~~~~~v~~~~~s~dg---~~l~s~~~d~~~~v 675 (762)
.. ....+...+.+++|+|+|+.+.. . ..+.+|+.. ++.++..+.+|..+|.+++|+|++ .+||+++.||. |
T Consensus 436 ~~-~~~~~~~~v~~v~~sp~g~~~~~-~-~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~--v 510 (524)
T 2j04_B 436 NS-SATQKSLRLWKWDYSIKDDKYRI-D-SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL--L 510 (524)
T ss_dssp ------CCCCEEEECBCCSSSCEEEE-C-CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE--E
T ss_pred cC-ccceeeeEEEEeccCCCCCeEEc-c-CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce--E
Confidence 00 00011235779999999986532 2 233345443 577888899999999999999995 49999999998 9
Q ss_pred EEEECCCC
Q 040987 676 SVWNMSKL 683 (762)
Q Consensus 676 ~vwd~~~~ 683 (762)
+||++...
T Consensus 511 rlw~l~~~ 518 (524)
T 2j04_B 511 TLEYLSLE 518 (524)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99998743
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.4e-37 Score=314.42 Aligned_cols=292 Identities=16% Similarity=0.237 Sum_probs=248.8
Q ss_pred cceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 345 LCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
+..+|++|.+.|++++|+|+ +++|++++.|++|++||+.+.+. ..+..|...|.+++|+|++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 34678999999999999997 68999999999999999987653 245678899999999999999999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
|++|+............+. ..+....++++++++++++.|+.+++||....... ......|
T Consensus 110 i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~---~~~~~~~------ 170 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHT----------KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY---TVQDESH------ 170 (340)
T ss_dssp EEEEETTTTEEEEEEECCS----------SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE---EECSSSC------
T ss_pred ceEEeecccceeeeecCCC----------CceeEEEEeecCccceeecCCCeEEEEEeCCCceE---EEEeccc------
Confidence 9999999988888777665 67788999999999999999999999998765322 1222222
Q ss_pred ceeEEEEEEecCC--CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 498 TVVVTLVALSQDG--SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 498 ~~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
...+..++|++++ .++++++ .|+.|++||+.+++....+ .+| ...|++++|+|++++|++++.
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~---------~d~~i~i~d~~~~~~~~~~-----~~h-~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCG---------WDKLVKVWNLANCKLKTNH-----IGH-TGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEE---------TTSCEEEEETTTTEEEEEE-----CCC-SSCEEEEEECTTSSEEEEEET
T ss_pred cCcccceEEccCCCCcEEEEEc---------CCCEEEEEECCCCceeeEe-----cCC-CCcEEEEEECCCCCEEEEEeC
Confidence 6779999998875 4677777 8899999999988765554 678 899999999999999999999
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec---------
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG--------- 646 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~--------- 646 (762)
|+.|++||+.+.+....+. +...+.+++|+|++.+++++.|+.|++||++++..+..+.
T Consensus 236 Dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 303 (340)
T 4aow_A 236 DGQAMLWDLNEGKHLYTLD------------GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSK 303 (340)
T ss_dssp TCEEEEEETTTTEEEEEEE------------CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------
T ss_pred CCeEEEEEeccCceeeeec------------CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeecc
Confidence 9999999999887665542 4578999999999988877779999999999987776653
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+|...|++++|+|||++|++++.||. |++||+++|+
T Consensus 304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~--v~iW~~~tGt 339 (340)
T 4aow_A 304 AEPPQCTSLAWSADGQTLFAGYTDNL--VRVWQVTIGT 339 (340)
T ss_dssp CCCCCEEEEEECTTSSEEEEEETTSC--EEEEEEEC--
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCE--EEEEeCCCcC
Confidence 57888999999999999999999998 9999999986
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-37 Score=316.61 Aligned_cols=298 Identities=17% Similarity=0.238 Sum_probs=260.2
Q ss_pred cceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 63 VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 63 ~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
.+...+.+|.+.|.+ ++|+|||++||+++ |+.|+|||+.+++.+.++.+|...|.+++|+|++ .+|++++.
T Consensus 23 ~~~~~l~~h~~~v~~-~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~l~s~~~ 94 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQ-VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-------KYCVTGSA 94 (369)
T ss_dssp EEEEEEECCSSCEEE-EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-------SEEEEEET
T ss_pred cccEEEEEeeceEEE-EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-------CEEEEEeC
Confidence 455678999999998 99999999999999 7999999999999999999999999999999999 68899999
Q ss_pred CCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 142 DGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 142 d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
|++|++||+.+++++..+.
T Consensus 95 dg~i~iwd~~~~~~~~~~~------------------------------------------------------------- 113 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWK------------------------------------------------------------- 113 (369)
T ss_dssp TTEEEEEETTTCCEEEEEE-------------------------------------------------------------
T ss_pred CCeEEEEECCCCcEEEEee-------------------------------------------------------------
Confidence 9999999999988766543
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEEEE-eC-----CeEEEEEccCchhhhh------eeeeeeeccCc--CeEEE
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQ-----RKLLIWKVPDVEAERV------VMRKITLHHTK--KLTVL 287 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~-----~~i~iwd~~~~~~~~~------~~~~~~~~~~~--~v~~~ 287 (762)
+...+.+++|+|++++++++ .+ +.|.+||+........ ........|.. .+.++
T Consensus 114 ------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 114 ------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp ------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred ------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 34567788999999999865 55 8999999987654210 01123334555 89999
Q ss_pred EEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCE
Q 040987 288 AFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAY 367 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 367 (762)
+|+|++++|++++.||.|++||+.+.. .....+..|...|.+++|+|++++
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNY-----------------------------EYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTT-----------------------------EEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCc-----------------------------EeEEEEecCCCceeEEEECCCCCE
Confidence 999999999999999999999997632 234677889999999999999999
Q ss_pred EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC--------------cEEEEEcCCceEEEEEc
Q 040987 368 LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN--------------QVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--------------~i~i~d~~~~~~~~~~~ 433 (762)
|++++.|+.|++||+.+++......+...+..++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 233 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred EEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 9999999999999999998877666888999999999999999999888 89999999999999998
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG 480 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 480 (762)
+|. ..|.+++|+|++++|++++.||.|++|++..+..
T Consensus 313 ~~~----------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 313 GHF----------GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CCS----------SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ccc----------CcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 887 7899999999999999999999999999986543
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-38 Score=337.63 Aligned_cols=356 Identities=9% Similarity=-0.016 Sum_probs=248.3
Q ss_pred eecCcccccCCceeecCC---------CEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEE
Q 040987 68 IRGGRSYVSSPPAFSNDV---------KRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCW 137 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg---------~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~ 137 (762)
...+.+.|.+ |+|+|++ ++||++. ++.. -..+|++ .+++
T Consensus 129 ~~~~~~~V~s-v~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~-------~~la 177 (524)
T 2j04_B 129 IYNVGGLVTD-IAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHL-------EMFD 177 (524)
T ss_dssp EEECCC--CC-CSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------
T ss_pred EEECCCceeE-EEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccchhh-------hhhc
Confidence 3446788997 9999997 8999998 3310 0137888 6789
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
|++.|++|+|||+.++++.....
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~--------------------------------------------------------- 200 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKV--------------------------------------------------------- 200 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEE---------------------------------------------------------
T ss_pred cCCCCceEEEEEccCCCCCceEE---------------------------------------------------------
Confidence 99999999999987765422110
Q ss_pred EEecCCccccceeeeccCCCceEEEECCC------CCEEEE-EeCCeEEEEEccCchhhh------heeeeeeeccCcCe
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSS------GKYFGI-RKQRKLLIWKVPDVEAER------VVMRKITLHHTKKL 284 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spd------g~~la~-~~~~~i~iwd~~~~~~~~------~~~~~~~~~~~~~v 284 (762)
..+.+|.+.|.+++|+|+ +.+||+ +.|++|++||+..+.... ......+.+|...|
T Consensus 201 -----------~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v 269 (524)
T 2j04_B 201 -----------QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI 269 (524)
T ss_dssp -----------EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCE
T ss_pred -----------EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCE
Confidence 123345678899999997 578884 579999999998764310 01123456899999
Q ss_pred EEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE--EEe
Q 040987 285 TVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL--IFS 362 (762)
Q Consensus 285 ~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~s 362 (762)
.+++|++++ .|++|+.||+|++||+.++. .+...+.+|...|.++ +|+
T Consensus 270 ~sv~~s~~~-~lasgs~DgtV~lWD~~~~~-----------------------------~~~~~~~~H~~~V~sv~~~~s 319 (524)
T 2j04_B 270 TTFDFLSPT-TVVCGFKNGFVAEFDLTDPE-----------------------------VPSFYDQVHDSYILSVSTAYS 319 (524)
T ss_dssp EEEEESSSS-EEEEEETTSEEEEEETTBCS-----------------------------SCSEEEECSSSCEEEEEEECC
T ss_pred EEEEecCCC-eEEEEeCCCEEEEEECCCCC-----------------------------CceEEeecccccEEEEEEEcC
Confidence 999999865 79999999999999997542 1235678899999999 578
Q ss_pred cCC-CEEEEEecCCeEEEEecCCCceec-cCCCC--CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCC
Q 040987 363 SDG-AYLYSGGKEGVLVVWQLDTGKKKF-LPRIG--SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 363 ~~g-~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
++| ++|++++.|++|++||+++++... +..+. ..+.+++|+|+++.+++++.|+.|++||++++.++..+.+|.
T Consensus 320 ~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~-- 397 (524)
T 2j04_B 320 DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE-- 397 (524)
T ss_dssp TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS--
T ss_pred CCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC--
Confidence 887 899999999999999998876532 22232 357889999999999999999999999999988888888887
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
+.|.+++|+|++++|++|+.|++|++||+... ........... .....+..++|+|+++.+...
T Consensus 398 --------~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~-----~~~~~v~~v~~sp~g~~~~~~-- 461 (524)
T 2j04_B 398 --------TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSAT-----QKSLRLWKWDYSIKDDKYRID-- 461 (524)
T ss_dssp --------SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC-----------CCCCEEEECBCCSSSCEEEEC--
T ss_pred --------CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccc-----eeeeEEEEeccCCCCCeEEcc--
Confidence 78999999999999999999999999998653 22111000000 012357899999999855332
Q ss_pred eccccCCCceeEEEEEEec-CCCceeEEEEEeecCCCCCceEEEEEcCCCC---eEEEEeCCCcEEEEEccc
Q 040987 519 KLAEEGIGSLVCLKFWVSG-TQNKEFTLSTIVYEPHRDAGISAVAFHPNRR---AAVSSSYGGDFKVWICND 586 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~ 586 (762)
. ..++|+.. ++..... +.+| ...|.+++|+|++. .+|+|+.||.|+||++..
T Consensus 462 --------~--~~~~~~~~~~g~~~~~-----l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 --------S--SYEVYPLTVNDVSKAK-----IDAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --------C--CCCCCC------------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred --------C--CceecccccCCcceee-----ecCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 2 22333322 2333333 3678 88999999999964 899999999999999864
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5e-36 Score=307.26 Aligned_cols=299 Identities=13% Similarity=0.181 Sum_probs=250.3
Q ss_pred ceeeeccCCCceEEEECCC-CCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 228 GGVTLAEMKEPQVITISSS-GKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 228 ~~~~~~~~~~v~~~~~spd-g~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
+..+.+|.+.|++++|+|+ +++|++ +.|++|+|||+.+.+.........+.+|...|.+++|+|++++|++++.|+.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 3567899999999999998 678885 57999999999887654334456678899999999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
++|+...... ......+...+..+.+++++++|++++.|+.+++||....
T Consensus 111 ~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~ 160 (340)
T 4aow_A 111 RLWDLTTGTT------------------------------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160 (340)
T ss_dssp EEEETTTTEE------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred eEEeecccce------------------------------eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence 9999876543 2455567778889999999999999999999999999876
Q ss_pred cee--ccCCCCCCeEEEEeCCCC--CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEE
Q 040987 386 KKK--FLPRIGSPLLYFTESPDP--SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV 461 (762)
Q Consensus 386 ~~~--~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 461 (762)
... ....+...+..++|++++ .++++++.|+.|++||+.+++....+.+|. +.|.+++|+|++++|
T Consensus 161 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~----------~~v~~~~~s~~~~~l 230 (340)
T 4aow_A 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT----------GYLNTVTVSPDGSLC 230 (340)
T ss_dssp EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTSSEE
T ss_pred ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC----------CcEEEEEECCCCCEE
Confidence 653 456678899999998875 567888999999999999999999999887 789999999999999
Q ss_pred EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 462 ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
++++.|+.|++||+.+.+.+..+.. ...+.+++|+|++.+++.+ .|+.|++||+++...
T Consensus 231 ~s~s~Dg~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~----------~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 231 ASGGKDGQAMLWDLNEGKHLYTLDG-----------GDIINALCFSPNRYWLCAA----------TGPSIKIWDLEGKII 289 (340)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEEC-----------SSCEEEEEECSSSSEEEEE----------ETTEEEEEETTTTEE
T ss_pred EEEeCCCeEEEEEeccCceeeeecC-----------CceEEeeecCCCCceeecc----------CCCEEEEEECCCCeE
Confidence 9999999999999998877665543 4569999999998766655 678999999998766
Q ss_pred eeEEEE----EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 542 EFTLST----IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 542 ~~~~~~----~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
...+.. ....+| ...|++++|+||+++|++|+.||.|+|||+.+|.
T Consensus 290 ~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 290 VDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 554432 123467 8899999999999999999999999999999875
No 55
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=313.00 Aligned_cols=304 Identities=11% Similarity=0.113 Sum_probs=260.5
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
....+.+|...|++++|+|++++|++++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 34568999999999999999999999999999999999998875 45668899999999999999999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCCceeeEEeecccc-cCCCCc
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDRGISEVQVCERNH-QPGDDV 497 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~ 497 (762)
.+++.+..+. +. ..+.+++|+|+++++++++.+ +.|++||+........+....... .....+
T Consensus 104 ~~~~~~~~~~-~~----------~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 104 SNGQCVATWK-SP----------VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTCCEEEEEE-CS----------SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCCcEEEEee-cC----------CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 9999988887 33 688999999999999999998 999999998776544433221100 000001
Q ss_pred --ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 498 --TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 498 --~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
...+.+++|+|++++|++++ .++.|++||+.+ ......+ ..| ...|.+++|+|++++|++++
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~-----~~~-~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGH---------KDGKISKYDVSNNYEYVDSI-----DLH-EKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEE---------TTSEEEEEETTTTTEEEEEE-----ECC-SSCEEEEEECTTSSEEEEEE
T ss_pred cCccceeEEEEcCCCCEEEEEc---------CCCEEEEEECCCCcEeEEEE-----ecC-CCceeEEEECCCCCEEEEec
Confidence 22799999999999999998 889999999998 4433333 567 88999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC--------------eEEEEeCCCC
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET--------------VITLWDPDRN 639 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~--------------~i~iwd~~~~ 639 (762)
.|+.|++||+.+++....+. +...+.+++|+|+++++++++ ++ .+++||..++
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYE------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEE------------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCceEEEEECCCCceeeeec------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 99999999999887665552 578899999999999999987 66 8999999999
Q ss_pred eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeE
Q 040987 640 VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688 (762)
Q Consensus 640 ~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~ 688 (762)
+.+..+.+|...|.+++|+||+++|++++.||. |++|+++++.....
T Consensus 306 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~--v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 306 EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF--IRLHHFEKSYFDFK 352 (369)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSE--EEEEEECHHHHTCC
T ss_pred cchhheecccCcEEEEEECCCCCEEEEEcCCCe--EEEEECccccchhH
Confidence 999999999999999999999999999999998 99999988765443
No 56
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.8e-36 Score=339.40 Aligned_cols=298 Identities=17% Similarity=0.296 Sum_probs=246.1
Q ss_pred eeeecCcccccCCceeecCC-CEEEEEe-CCEEEEEEccc-----ceEEeeecCCccceeEEEEeCCCCcccceeeeEEe
Q 040987 66 KMIRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTST-----GLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg-~~la~~~-~~~i~iwd~~~-----~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s 138 (762)
..+.+|.+.|.+ ++|+|++ ++|++|+ |++|+|||+.+ +...+.+.+|...|.+++|+|++ .+|+|
T Consensus 376 ~~l~~H~~~V~~-v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-------~~l~s 447 (694)
T 3dm0_A 376 GTMRAHTDMVTA-IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-------QFALS 447 (694)
T ss_dssp EEEECCSSCEEE-EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-------SEEEE
T ss_pred hhcccCCceeEE-EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-------CEEEE
Confidence 357899999998 9999875 7999999 79999999875 34667899999999999999999 68899
Q ss_pred eecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEE
Q 040987 139 ASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICK 218 (762)
Q Consensus 139 ~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (762)
|+.|++|+|||+.++++++.+.
T Consensus 448 gs~Dg~v~vwd~~~~~~~~~~~---------------------------------------------------------- 469 (694)
T 3dm0_A 448 GSWDGELRLWDLAAGVSTRRFV---------------------------------------------------------- 469 (694)
T ss_dssp EETTSEEEEEETTTTEEEEEEE----------------------------------------------------------
T ss_pred EeCCCcEEEEECCCCcceeEEe----------------------------------------------------------
Confidence 9999999999999887665443
Q ss_pred EecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC--cE
Q 040987 219 CNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ--RI 295 (762)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~ 295 (762)
+|...|.+++|+|++++|++ +.|+.|++||....... .......+|...|.+++|+|++ ..
T Consensus 470 --------------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 470 --------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY--TISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp --------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--EECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred --------------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce--eeccCCCCCCCcEEEEEEeCCCCcce
Confidence 46677889999999999985 47999999998654322 1112224788999999999987 58
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
|++++.|+.|++||+.+.+ +...+.+|...|.+++|+|++++|++++.|+
T Consensus 534 l~s~s~d~~v~vwd~~~~~------------------------------~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCK------------------------------LRSTLAGHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp EEEEETTSCEEEEETTTCC------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeCCCeEEEEECCCCc------------------------------EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 9999999999999997653 3467889999999999999999999999999
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC---------CCccc
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL---------PEEYK 446 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------~~~~~ 446 (762)
.|++||+.+++......+...+.+++|+|++.+++++ .++.|++||+.+++.+..+..+...... ...+.
T Consensus 584 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (694)
T 3dm0_A 584 VVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662 (694)
T ss_dssp BCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CC
T ss_pred eEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCcee
Confidence 9999999999887766777889999999999888776 5667999999999988887654321100 00111
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
..+.+++|+|+|++|++++.||.|++|++.
T Consensus 663 ~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 663 IYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 246889999999999999999999999985
No 57
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7e-36 Score=336.12 Aligned_cols=291 Identities=17% Similarity=0.238 Sum_probs=248.1
Q ss_pred ceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 346 CTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
...+.+|.+.|++++|+|++ ++|++++.|++|++||+.+... ..+..|...|.+++|+|++++|++++.|+.|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 34688999999999999864 7999999999999999976432 3467889999999999999999999999999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
++||+.++.....+.+|. ..|.+++|+|++++|++++.|++|++||...... ..+.... ..|.
T Consensus 455 ~vwd~~~~~~~~~~~~h~----------~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~------~~h~ 517 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHT----------KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGG------EGHR 517 (694)
T ss_dssp EEEETTTTEEEEEEECCS----------SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSST------TSCS
T ss_pred EEEECCCCcceeEEeCCC----------CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCC------CCCC
Confidence 999999999999999887 7899999999999999999999999999864321 1111111 2237
Q ss_pred eeEEEEEEecCC--CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 499 VVVTLVALSQDG--SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 499 ~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
..|.+++|+|++ ..+++++ .|+.|++||+.+.+....+ .+| ...|++++|+|++++|++++.|
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s---------~d~~v~vwd~~~~~~~~~~-----~~h-~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSAS---------WDKTVKVWNLSNCKLRSTL-----AGH-TGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEE---------TTSCEEEEETTTCCEEEEE-----CCC-SSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEEeCCCCcceEEEEe---------CCCeEEEEECCCCcEEEEE-----cCC-CCCEEEEEEeCCCCEEEEEeCC
Confidence 789999999987 5789998 8999999999988765544 678 8999999999999999999999
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecccc-------
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETL------- 649 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~------- 649 (762)
|.|++||+.+++....+. +...|.+++|+|++.+|+++.++.|++||+.+++.+..+..+.
T Consensus 583 g~i~iwd~~~~~~~~~~~------------~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 650 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLE------------ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA 650 (694)
T ss_dssp SBCEEEETTTTEEEECCB------------CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC------
T ss_pred CeEEEEECCCCceEEEec------------CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccc
Confidence 999999999887765542 4567999999999999999888889999999998887765332
Q ss_pred ------------CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 650 ------------TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 650 ------------~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
..+.+++|+|||++|++++.||. |++||+..
T Consensus 651 ~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~--i~iW~i~~ 693 (694)
T 3dm0_A 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV--IRVWGIGR 693 (694)
T ss_dssp ----------CCCCEEEEEECTTSSEEEEEETTSE--EEEEEC--
T ss_pred cccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe--EEEEeccC
Confidence 12788999999999999999998 99999863
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-35 Score=315.01 Aligned_cols=323 Identities=18% Similarity=0.233 Sum_probs=271.3
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
....+.+|.+.|.. +++++|++||+++ ||.|+|||+.+++++.++.+|.+.|.+++|+ + .++++++.|
T Consensus 110 ~~~~l~~h~~~v~~--~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~-------~~l~s~~~d 178 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--D-------NIIISGSTD 178 (445)
T ss_dssp CCEEEECSTTSCEE--EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--T-------TEEEEEETT
T ss_pred eeEEecccCCCcEE--EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--C-------CEEEEEeCC
Confidence 34567999998753 3677899999999 7999999999999999999999999999998 4 578899999
Q ss_pred CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
++|++||+.+++++..+..|. .+.++.+. +.. + ++|+.|+.|++||+
T Consensus 179 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------~~~---l-------------------~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 179 RTLKVWNAETGECIHTLYGHTSTVRCMHLH----------EKR---V-------------------VSGSRDATLRVWDI 226 (445)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEE----------TTE---E-------------------EEEETTSEEEEEES
T ss_pred CeEEEEECCcCcEEEEECCCCCcEEEEEec----------CCE---E-------------------EEEeCCCEEEEEEC
Confidence 999999999999999998887 77777541 110 1 66889999999999
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
.+++.+ ....+|...+.+++| ++++++ ++.|+.|++||+.+++.. ....+|...|.+++| +++++++++
T Consensus 227 ~~~~~~-~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 227 ETGQCL-HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL-----HTLQGHTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp SSCCEE-EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE-----EEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred CCCcEE-EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe-----EEecCCCCceEEEEE--CCCEEEEEe
Confidence 999888 566789999999999 677777 557999999999987754 566789999999999 888999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
.||.|++||+.+++ .+..+.+|...+.++.+ +++++++++.||.|++|
T Consensus 297 ~d~~i~i~d~~~~~------------------------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 297 LDTSIRVWDVETGN------------------------------CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIW 344 (445)
T ss_dssp TTSCEEEEETTTCC------------------------------EEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred CCCeEEEEECCCCC------------------------------EEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEE
Confidence 99999999997764 34567788888888877 46799999999999999
Q ss_pred ecCCCceecc-C---CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC
Q 040987 381 QLDTGKKKFL-P---RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 381 d~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 456 (762)
|+.+++.... . .+...|.+++|+ ++++++++.||.|++||+.+++.+..+..... ..+.+.|.+++|+|
T Consensus 345 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 345 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES-----GGSGGVVWRIRASN 417 (445)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT-----GGGTCEEEEEEECS
T ss_pred ECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc-----CCCCceEEEEEecC
Confidence 9999887532 2 277889999995 68999999999999999999999888732110 01237899999999
Q ss_pred CCCEEEEeecCce----EEEEEcCCC
Q 040987 457 DGGLVALRAENYC----IHFYSLLDD 478 (762)
Q Consensus 457 ~~~~l~~~~~dg~----i~i~d~~~~ 478 (762)
++.++++++.||. +.+||+...
T Consensus 418 ~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 418 TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999999997 999998753
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.6e-35 Score=315.73 Aligned_cols=313 Identities=16% Similarity=0.243 Sum_probs=259.7
Q ss_pred eeeeccCcCe-EEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 275 KITLHHTKKL-TVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 275 ~~~~~~~~~v-~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
..+.+|...+ .++.+ ++++|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~------------------------------~~~~~~~h~ 162 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK------------------------------FLLQLSGHD 162 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE------------------------------EEEEECCCS
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc------------------------------EEEEEeCCC
Confidence 4667888775 56555 56799999999999999997764 346778999
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeC--CCCCeEEEEecCCcEEEEEcCCceE--
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTES--PDPSLSSISCADNQVHLLKMPSMEI-- 428 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i~i~d~~~~~~-- 428 (762)
..|.+++|++++ .|++++.||+|++||+++++.. .+..|...|.+++|+ ++++++++++.|+.|++||+.++..
T Consensus 163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 999999999988 9999999999999999998875 456688999999998 6889999999999999999987653
Q ss_pred ---------------------EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 429 ---------------------IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 429 ---------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
...+.+|. ..+.++ +++++++++++.|+.|++||+.+++.+..+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~- 308 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHM----------ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG- 308 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCS----------SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-
T ss_pred cccccCCcceEeeccCCCeEEEEEccCcc----------ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-
Confidence 33344443 455554 78899999999999999999998876655432
Q ss_pred cccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 488 ERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
| ...+.+++|+|+++++++++ .|+.|++||+.+++....+ .+| ...|.+++|+ +
T Consensus 309 ---~------~~~v~~~~~~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~-----~~h-~~~v~~~~~~--~ 362 (464)
T 3v7d_B 309 ---H------TDRIYSTIYDHERKRCISAS---------MDTTIRIWDLENGELMYTL-----QGH-TALVGLLRLS--D 362 (464)
T ss_dssp ---C------SSCEEEEEEETTTTEEEEEE---------TTSCEEEEETTTTEEEEEE-----CCC-SSCEEEEEEC--S
T ss_pred ---C------CCCEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCcEEEEE-----eCC-CCcEEEEEEc--C
Confidence 2 67799999999999999999 8899999999998766555 578 8899999997 5
Q ss_pred CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEE-ec
Q 040987 568 RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAV-IG 646 (762)
Q Consensus 568 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~-l~ 646 (762)
++|++++.||.|++||+.++...... .+...+..++|+|++++|++++|+.|++||+.+++++.. +.
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~ 430 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSRKFSY------------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL 430 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEE------------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTT
T ss_pred CEEEEEeCCCcEEEEECCCCceeeee------------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhc
Confidence 79999999999999999886644333 256678889999999999999999999999999999885 67
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~ 672 (762)
+|...|.+++|+ +..++++++.|+.
T Consensus 431 ~~~~~v~~v~~~-~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 431 KDADQIWSVNFK-GKTLVAAVEKDGQ 455 (464)
T ss_dssp TTCSEEEEEEEE-TTEEEEEEEETTE
T ss_pred cCCCcEEEEEec-CCEEEEEEEeCCe
Confidence 788999999998 3455555566764
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8e-36 Score=309.91 Aligned_cols=294 Identities=11% Similarity=0.118 Sum_probs=247.2
Q ss_pred eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc--e-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--K-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~--~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
.+..|...|.+++|+|++++|++++.|+.|++||+.+++ . ..+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 345588999999999999999999999999999999985 3 4566788999999999999999999999999999999
Q ss_pred CceEEEEE--ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 425 SMEIIRSI--SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 425 ~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+++....+ ..+. ..+.+++|+|++++|++++.|+.|++||+..+............| ...+.
T Consensus 83 ~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~------~~~i~ 146 (372)
T 1k8k_C 83 GRTWKPTLVILRIN----------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI------RSTVL 146 (372)
T ss_dssp TTEEEEEEECCCCS----------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC------CSCEE
T ss_pred CCeeeeeEEeecCC----------CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc------CCCee
Confidence 88765554 3343 789999999999999999999999999999877544333333333 67799
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEec------------------CCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG------------------TQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
+++|+|++++|++++ .|+.|++||+. .++.... +.+| ...|.+++|+
T Consensus 147 ~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~v~~~~~~ 211 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGS---------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-----SSSS-CGWVHGVCFS 211 (372)
T ss_dssp EEEECTTSSEEEEEE---------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-----CCCC-SSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEc---------CCCCEEEEEcccccccccccccccccccchhhheEe-----cCCC-CCeEEEEEEC
Confidence 999999999999998 88999999964 3333332 3577 8899999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCC--CeE-
Q 040987 565 PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDR--NVL- 641 (762)
Q Consensus 565 pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~--~~~- 641 (762)
|++++|++++.|+.|++||+.+++....+ ..|...|.+++|+|++++|+++.|+.|++|++.+ ++.
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADKKMAVATL-----------ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS 280 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGTTEEEEE-----------ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceeEEE-----------ccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEE
Confidence 99999999999999999999988765544 3577899999999999999999899999999987 431
Q ss_pred -------------------------------E------EEe-ccccCceeEEEEe-CCC---CEEEEEEcCCCCeEEEEE
Q 040987 642 -------------------------------V------AVI-GETLTPIMNMSFV-GSS---EYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 642 -------------------------------~------~~l-~~~~~~v~~~~~s-~dg---~~l~s~~~d~~~~v~vwd 679 (762)
. ..+ .+|..+|.+++|. ++| ++|++++.||. |++||
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~--i~~W~ 358 (372)
T 1k8k_C 281 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG--MSIWD 358 (372)
T ss_dssp ECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE--EEEEE
T ss_pred EeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc--eEEEE
Confidence 0 223 4899999999966 677 99999999998 99999
Q ss_pred CCCCce
Q 040987 680 MSKLSI 685 (762)
Q Consensus 680 ~~~~~~ 685 (762)
+.+++.
T Consensus 359 ~~~~~~ 364 (372)
T 1k8k_C 359 VRSLES 364 (372)
T ss_dssp HHHHHH
T ss_pred ecChhH
Confidence 987543
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.6e-35 Score=309.93 Aligned_cols=323 Identities=16% Similarity=0.221 Sum_probs=272.3
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.+.. ++++++++|++|+.||.|++||+.+++ .+..+.+|..
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~------------------------------~~~~~~~h~~ 160 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK------------------------------CLRTLVGHTG 160 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC------------------------------EEEECCCCSS
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc------------------------------EEEEEcCCCC
Confidence 566788887643 355578999999999999999997664 3467789999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
.|.+++|+ ++.+++++.||+|++||+.+++.. .+..|...|.++.++ ++.+++++.|+.|++||+.+++.+..+.
T Consensus 161 ~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 236 (445)
T 2ovr_B 161 GVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM 236 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred CEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence 99999997 569999999999999999998875 456788899999985 6789999999999999999999999998
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+|. ..+.++++ +++++++++.||.|++||+.+++.+..+. .| ...+.+++| +++++
T Consensus 237 ~~~----------~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~------~~~v~~~~~--~~~~l 292 (445)
T 2ovr_B 237 GHV----------AAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ----GH------TNRVYSLQF--DGIHV 292 (445)
T ss_dssp CCS----------SCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC----CC------SSCEEEEEE--CSSEE
T ss_pred CCc----------ccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec----CC------CCceEEEEE--CCCEE
Confidence 877 78888888 78899999999999999999886655543 22 667899988 88999
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
++++ .|+.|++||+.+++....+ .+| ...+.++.+ +++++++++.||.|++||+.+++....+
T Consensus 293 ~~~~---------~d~~i~i~d~~~~~~~~~~-----~~~-~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 355 (445)
T 2ovr_B 293 VSGS---------LDTSIRVWDVETGNCIHTL-----TGH-QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTL 355 (445)
T ss_dssp EEEE---------TTSCEEEEETTTCCEEEEE-----CCC-CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEe---------CCCeEEEEECCCCCEEEEE-----cCC-cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9999 8899999999998876655 577 778888877 4679999999999999999887765544
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe-----ccccCceeEEEEeCCCCEEEEE
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI-----GETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l-----~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
. ....|...|++++|+ +++|++++ ||.|++||+.+++.+..+ .+|.+.|++++|+|++.+|+++
T Consensus 356 ~--------~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 356 Q--------GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp C--------STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred c--------cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 2 112377899999995 67999998 999999999999998888 5688889999999999999999
Q ss_pred EcCCC--CeEEEEECCCC
Q 040987 668 SWGSK--PQLSVWNMSKL 683 (762)
Q Consensus 668 ~~d~~--~~v~vwd~~~~ 683 (762)
+.||. ..|.+||....
T Consensus 426 ~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CSSSSSCCEEEEEECCCC
T ss_pred ccCCCCccEEEEEECCCC
Confidence 99983 34999998753
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.5e-35 Score=315.88 Aligned_cols=321 Identities=15% Similarity=0.208 Sum_probs=263.4
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
....+.+|...|.. ++++++++|++|+ ||.|++||+.+++.+.++.+|.+.|++++|+|++ +|++|+.|
T Consensus 113 ~~~~l~~h~~~v~~--~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--------~l~s~s~d 182 (464)
T 3v7d_B 113 QRTTLRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--------ILVSGSTD 182 (464)
T ss_dssp EEEEEECCSSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--------EEEEEETT
T ss_pred ceEEEcCCCCCcEE--EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--------EEEEEeCC
Confidence 44578999998753 2444678999999 7999999999999999999999999999999987 67799999
Q ss_pred CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
++|++||+.+++++..+..|. ++.++.|. ...+...+ ++|+.|+.|++||+
T Consensus 183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--------------------~~~~~~~l--------~s~s~d~~i~vwd~ 234 (464)
T 3v7d_B 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIV--------------------EYKNIKYI--------VTGSRDNTLHVWKL 234 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEE--------------------ESSSCEEE--------EEEETTSCEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCCccEEEEEe--------------------cCCCCCEE--------EEEcCCCcEEEeeC
Confidence 999999999999999998876 77777551 11111111 67889999999999
Q ss_pred CCccccc----------------------eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeee
Q 040987 222 TESRLAG----------------------GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITL 278 (762)
Q Consensus 222 ~~~~~~~----------------------~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~ 278 (762)
.++.... ....+|...+.++ ++++++++++ .|+.|++||+.+++.. ....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~-----~~~~ 307 (464)
T 3v7d_B 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCL-----YILS 307 (464)
T ss_dssp CCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEE-----EEEC
T ss_pred CCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE-----EEec
Confidence 9876541 2455677777765 6889999855 7999999999988754 5667
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
+|...|.+++|+|++++|++|+.||.|++||+.+++ ++..+.+|...|.+
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------------------------~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE------------------------------LMYTLQGHTALVGL 357 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE------------------------------EEEEECCCSSCEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------------------------EEEEEeCCCCcEEE
Confidence 899999999999999999999999999999997764 34678889999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE-EccCCC
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS-ISGIKL 437 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~ 437 (762)
++|+ +++|++++.||.|++||+.++.......+...+..++|+++++++++++ ++.|++||+.+++.+.. +..+.
T Consensus 358 ~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~- 433 (464)
T 3v7d_B 358 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDA- 433 (464)
T ss_dssp EEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTC-
T ss_pred EEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCC-
Confidence 9997 5799999999999999999988776666777888899999999999987 89999999999998876 44443
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEE
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFY 473 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 473 (762)
..|.+++|+ +..++++++.+|.+.+|
T Consensus 434 ---------~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 434 ---------DQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ---------SEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ---------CcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 789999998 34455555667655544
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=306.99 Aligned_cols=299 Identities=13% Similarity=0.159 Sum_probs=244.8
Q ss_pred eeeeccccceeEEEEecCCCEEE-EEec---CCeEEEEecCCCcee--ccCCCCCCeEEEEeCCC---CCeEEEEecCCc
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLY-SGGK---EGVLVVWQLDTGKKK--FLPRIGSPLLYFTESPD---PSLSSISCADNQ 417 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~-s~~~---dg~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~ 417 (762)
..+.+|...|.+++|+|++..++ +++. |+.|++||+.+++.. ....+...|.+++|+|+ +++|++++.|+.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45678999999999999996655 5555 899999999998774 33467889999999998 699999999999
Q ss_pred EEEEEcCCce-EEEEEccCCCCCCCCCcccCceeeEE------EeCCCCEEEEeecCceEEEEEcCCCC-ceeeEEeecc
Q 040987 418 VHLLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIA------FNHDGGLVALRAENYCIHFYSLLDDR-GISEVQVCER 489 (762)
Q Consensus 418 i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~ 489 (762)
|++||+.+++ .+..+.+|. ..|.++. |+|++++|++++.|+.|++||+.++. ....+.....
T Consensus 92 i~iwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHK----------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp EEEECTTSCSSCSEEECCCS----------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred EEEEeCCCCCccEEEEEecc----------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence 9999999887 788888877 7788885 56899999999999999999999876 4444432221
Q ss_pred cccCCCCcceeEEEEE----EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC
Q 040987 490 NHQPGDDVTVVVTLVA----LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~----~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
.. ...+.+++ |+|+++++++++ .++.|++||+.+++.... ..| ...|.+++|+|
T Consensus 162 ~~------~~~v~~~~~~~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~------~~~-~~~v~~~~~~~ 219 (357)
T 3i2n_A 162 EN------KRDCWTVAFGNAYNQEERVVCAGY---------DNGDIKLFDLRNMALRWE------TNI-KNGVCSLEFDR 219 (357)
T ss_dssp SC------CCCEEEEEEECCCC-CCCEEEEEE---------TTSEEEEEETTTTEEEEE------EEC-SSCEEEEEESC
T ss_pred CC------CCceEEEEEEeccCCCCCEEEEEc---------cCCeEEEEECccCceeee------cCC-CCceEEEEcCC
Confidence 11 34688888 789999999998 889999999998865332 346 78999999999
Q ss_pred ---CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc-CCeEEEEeCCCC-
Q 040987 566 ---NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA-ETVITLWDPDRN- 639 (762)
Q Consensus 566 ---d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~-d~~i~iwd~~~~- 639 (762)
++.+|++++.||.|++||+.++.....+. ......|...|++++|+|+++ +|++++ ||.|++||+.++
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFA------SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEE------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCccccee------eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 99999999999999999999876654431 112336889999999999999 788888 999999998754
Q ss_pred ------------------eEEEEeccccCceeEEEEeCCCCEEE-EEEcCCCCeEEEEECCCCce
Q 040987 640 ------------------VLVAVIGETLTPIMNMSFVGSSEYLV-ATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 640 ------------------~~~~~l~~~~~~v~~~~~s~dg~~l~-s~~~d~~~~v~vwd~~~~~~ 685 (762)
+++..+.+|..+|.+++|+|++++|+ +++.|+. |++||+.+.+.
T Consensus 294 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~--i~iw~~~~~~~ 356 (357)
T 3i2n_A 294 QRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT--VRVLIVTKLNK 356 (357)
T ss_dssp CC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE--EEEEEECC---
T ss_pred ccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc--EEEEECCCccc
Confidence 46778889999999999999999998 8999998 99999987654
No 64
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.3e-36 Score=312.77 Aligned_cols=315 Identities=11% Similarity=0.097 Sum_probs=251.0
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc-------eeccCCCCCCeEEEEeCCC----C---CeEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-------KKFLPRIGSPLLYFTESPD----P---SLSSI 411 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-------~~~~~~~~~~v~~~~~s~~----~---~~l~~ 411 (762)
...+.+|...|.+++|+| ++|++++.||.|++||+.+++ ...+..|...|.+++|+|+ + ++|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 467789999999999998 799999999999999999987 4556788899999999999 9 99999
Q ss_pred EecCCcEEEEEcCCceE-----EEEEccCCCCCCCCCcccCceeeEEEe----CCCCE-EEEeecCceEEEEEcCC----
Q 040987 412 SCADNQVHLLKMPSMEI-----IRSISGIKLPCPLPEEYKGLCRDIAFN----HDGGL-VALRAENYCIHFYSLLD---- 477 (762)
Q Consensus 412 ~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~-l~~~~~dg~i~i~d~~~---- 477 (762)
++.|+.|++|++.+++. ...+..+.... ....|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-----KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-----GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred EcCCCCEEEEEccCCcccccccceeeccccccc-----CCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 99999999999998776 77777763110 01689999999 99999 99999999999999988
Q ss_pred --CCcee-----eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 478 --DRGIS-----EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 478 --~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
++.+. .+..... ....+...+.+++|+|++ ++++++ .++.|++||+.+++....+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~-~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~-- 226 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVE---SPMTPSQFATSVDISERG-LIATGF---------NNGTVQISELSTLRPLYNFESQ-- 226 (397)
T ss_dssp HHHTTTCCCCEEEEEEEEC---CSSSSCCCCCEEEECTTS-EEEEEC---------TTSEEEEEETTTTEEEEEEECC--
T ss_pred cccceeeccCcceeeeeec---cccCCCCCceEEEECCCc-eEEEEe---------CCCcEEEEECCCCceeEEEecc--
Confidence 55554 3322000 001126679999999999 999998 8899999999988766555310
Q ss_pred cCCC--CCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccccccccccCCceee--eeecccCCCCeEEEEEcCCCcEE
Q 040987 551 EPHR--DAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDELQQKDLQSSGWSC--HAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 551 ~~h~--~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
.+|. ...|.+++|+|++++|++++.| +.|++||+.+++....+....... ......|...|.+++|+|++++|
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 306 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence 0021 4589999999999999999999 999999999877655542000000 00000178899999999999999
Q ss_pred EEEc-CCeEEEEeCCCCeEEEEec------cc---------------cCceeEEEEeCCC----------CEEEEEEcCC
Q 040987 624 AVAA-ETVITLWDPDRNVLVAVIG------ET---------------LTPIMNMSFVGSS----------EYLVATSWGS 671 (762)
Q Consensus 624 a~~~-d~~i~iwd~~~~~~~~~l~------~~---------------~~~v~~~~~s~dg----------~~l~s~~~d~ 671 (762)
++++ |+.|++||+.+++++..+. +| ..+|.+++|+|++ ++|++++.|+
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 9998 9999999999999999998 78 8999999999998 7999999999
Q ss_pred CCeEEEEECCCCc
Q 040987 672 KPQLSVWNMSKLS 684 (762)
Q Consensus 672 ~~~v~vwd~~~~~ 684 (762)
. |++||+.+|+
T Consensus 387 ~--i~iw~~~~g~ 397 (397)
T 1sq9_A 387 S--IRWFREAGGK 397 (397)
T ss_dssp E--EEEEEEEC--
T ss_pred c--EEEEEcCCCC
Confidence 8 9999998874
No 65
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=321.37 Aligned_cols=353 Identities=12% Similarity=0.135 Sum_probs=264.2
Q ss_pred EECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccC---Cceee
Q 040987 242 TISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFG---DRTFA 317 (762)
Q Consensus 242 ~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~---~~~~~ 317 (762)
.|+|+++.++.+. .|+... + .+..+..+|.+.|++++|+| ++++|++|+.||.|++||+.+ +...
T Consensus 34 ~f~~~~~~~~~~~-----~w~~~g-~----~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~- 102 (437)
T 3gre_A 34 EFGPIQEIVRSPN-----MGNLRG-K----LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY- 102 (437)
T ss_dssp GGCCCCCCCCCCC-----GGGCCC-C----EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC-
T ss_pred hcCCccccccccc-----cccccc-e----EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc-
Confidence 4788888887543 366433 2 22244478999999999999 999999999999999999865 2111
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecC---CCceec-----
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLD---TGKKKF----- 389 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~---~~~~~~----- 389 (762)
.....+ .|...|.+++|+|++++|++++.|+.|++||++ +++...
T Consensus 103 --------------------------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 155 (437)
T 3gre_A 103 --------------------------SSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE 155 (437)
T ss_dssp --------------------------SCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE
T ss_pred --------------------------ceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc
Confidence 111222 589999999999999999999999999999995 443321
Q ss_pred ------cCC--CCCCeEEEE--eCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc--CCCCCCCCCcccCceeeEEEeCC
Q 040987 390 ------LPR--IGSPLLYFT--ESPDPSLSSISCADNQVHLLKMPSMEIIRSISG--IKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 390 ------~~~--~~~~v~~~~--~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+.. +...+.++. +++++.++++++.|+.|++||+++++.+..+.+ |. +.|.+++|+|+
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~----------~~v~~~~~s~~ 225 (437)
T 3gre_A 156 CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRH----------GAVSSICIDEE 225 (437)
T ss_dssp EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGG----------CCEEEEEECTT
T ss_pred eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCC----------CceEEEEECCC
Confidence 111 556677777 678999999999999999999999999999987 44 78999999999
Q ss_pred CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe----cCCCeEEEEeeeccccCCCceeEEEE
Q 040987 458 GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS----QDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
+++|++++.||.|++||+++++.+..+.. .+ ...|.+++|+ |++++|++++ .|+.|++
T Consensus 226 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~------~~~v~~~~~~~~~s~~~~~l~s~~---------~dg~i~i 287 (437)
T 3gre_A 226 CCVLILGTTRGIIDIWDIRFNVLIRSWSF---GD------HAPITHVEVCQFYGKNSVIVVGGS---------SKTFLTI 287 (437)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEEBC---TT------CEEEEEEEECTTTCTTEEEEEEES---------TTEEEEE
T ss_pred CCEEEEEcCCCeEEEEEcCCccEEEEEec---CC------CCceEEEEeccccCCCccEEEEEc---------CCCcEEE
Confidence 99999999999999999998766555432 11 5679999655 5688999998 8999999
Q ss_pred EEecCCCceeEEEEE-------------------eecC--CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc
Q 040987 534 WVSGTQNKEFTLSTI-------------------VYEP--HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 534 wd~~~~~~~~~~~~~-------------------~~~~--h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
||+.+++....+... .+.+ | ...|++++|+ ++++|++++.|+.|++||+.+++....
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc-CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 999988766655411 0112 5 7789999999 789999999999999999999887665
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCC--CCEEEEEEcC
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGS--SEYLVATSWG 670 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~d--g~~l~s~~~d 670 (762)
+. ........+....++++..+++.. |+...+........|...|++++|+++ +.+|++++.|
T Consensus 366 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d 430 (437)
T 3gre_A 366 VI--------SPSRFSDVFIPTQVTANLTMLLRK-------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS 430 (437)
T ss_dssp EE--------CC--CCCEEEEEEEETTEEEEEEE-------CC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred Ee--------cccccCceEEEEEeecceEEEEEe-------cccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence 52 001123445566676766655544 333444455566679999999999998 8899999999
Q ss_pred CCCeEEEEE
Q 040987 671 SKPQLSVWN 679 (762)
Q Consensus 671 ~~~~v~vwd 679 (762)
|. |++|+
T Consensus 431 G~--I~iw~ 437 (437)
T 3gre_A 431 GL--IGIFQ 437 (437)
T ss_dssp SC--EEEEC
T ss_pred ce--EEEeC
Confidence 98 99995
No 66
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.4e-34 Score=336.46 Aligned_cols=487 Identities=11% Similarity=0.028 Sum_probs=347.2
Q ss_pred CcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC------Ce
Q 040987 71 GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD------GT 144 (762)
Q Consensus 71 h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d------~~ 144 (762)
+...+.. ++||+ ++||++..+.|++||+.+++ .+.+.+|...|.+++||||| ++||+++.+ ..
T Consensus 13 ~~~~~~~-~~~S~--~~iaf~~~~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG-------~~la~~s~~~~~~~~~~ 81 (1045)
T 1k32_A 13 MPNLLLN-PDIHG--DRIIFVCCDDLWEHDLKSGS-TRKIVSNLGVINNARFFPDG-------RKIAIRVMRGSSLNTAD 81 (1045)
T ss_dssp CCCCCEE-EEEET--TEEEEEETTEEEEEETTTCC-EEEEECSSSEEEEEEECTTS-------SEEEEEEEESTTCCEEE
T ss_pred ccceEeC-cEEeC--CEEEEEECCcEEEEECCCCc-EEEeeeCCCcccCeEECCCC-------CEEEEEEeeccCCCCCe
Confidence 3456665 89995 69999998999999998776 45677899999999999999 566666543 48
Q ss_pred EEEEeCCCcceEEEEEecc-ce-------EEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 145 IKYWDFSVPELLKTIDVKF-SI-------FSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~-~v-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
|.+||+.+++ .+.+..|. .+ ..++| ++|++ ++|....+. .-.....|
T Consensus 82 i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~--------SpDg~----ll~~~~~~~------------~~~~~~~l 136 (1045)
T 1k32_A 82 LYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGF--------DPDGN----LIISTDAMQ------------PFSSMTCL 136 (1045)
T ss_dssp EEEEETTTTE-EEECCCCCEEEETTEECSEEEEE--------CTTCC----EEEEECTTS------------SSTTCCEE
T ss_pred EEEEECCCCC-eEEcccCCCcccccccccccccC--------CCCCE----EEEEECCcC------------CCcccceE
Confidence 9999998887 45566655 44 56666 55664 333321100 00023468
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe-------------CCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK-------------QRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
.+|++.+++.. .+..+ ....++|+| | +++++. +....+|....+. .. ..+.+|...
T Consensus 137 ~~~~~~~g~~~--~l~~~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~----~~-~~l~~~~~~ 205 (1045)
T 1k32_A 137 YRVENDGINFV--PLNLG--PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG----AF-KKIVDMSTH 205 (1045)
T ss_dssp EEEEGGGTEEE--ECCSC--SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETT----EE-EEEECCSSC
T ss_pred EEEECCCCCeE--EecCC--CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCC----Ce-EECcCCCCc
Confidence 88888777654 22222 345778999 8 777642 2345666543322 12 233789999
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
+.++.|+++ .++++++.++.+.+|.+.... .....+..|. .+..++|+|
T Consensus 206 v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g-----------------------------~~~~~l~~~~-~~~~~~~Sp 254 (1045)
T 1k32_A 206 VSSPVIVGH-RIYFITDIDGFGQIYSTDLDG-----------------------------KDLRKHTSFT-DYYPRHLNT 254 (1045)
T ss_dssp CEEEEEETT-EEEEEECTTSSCEEEEEETTS-----------------------------CSCEECCCCC-SSCEEEEEE
T ss_pred ccceEEeCC-EEEEEEeccCceEEEEEeCCC-----------------------------CcceEecCCC-CcceeeEcC
Confidence 999999998 667777888999999864311 1123344444 356779999
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCC-----------CCCCeEEEEeC-CCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPR-----------IGSPLLYFTES-PDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~-----------~~~~v~~~~~s-~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
||++|+++ .++.|++||+...+...+.. +...+..++|+ |||++|++++ ++.+++|+..+++...
T Consensus 255 DG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~- 331 (1045)
T 1k32_A 255 DGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK- 331 (1045)
T ss_dssp SSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-
T ss_pred CCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-
Confidence 99999887 47999999996554443222 12358899999 9999999886 8899999998876543
Q ss_pred EccCCCCCCCCCcccC-ceeeEEEeCCCCEEEEeecCceEE-EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 432 ISGIKLPCPLPEEYKG-LCRDIAFNHDGGLVALRAENYCIH-FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+..+. . .+..++|+ ||+.+++++.++.+. +||+.+++.. .+. .+ ...+..++|+||
T Consensus 332 ~~~~~----------~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~----~~------~~~~~~~~~SpD 389 (1045)
T 1k32_A 332 VPEPL----------RIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE----EN------LGNVFAMGVDRN 389 (1045)
T ss_dssp CSCCS----------CEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC----CC------CCSEEEEEECTT
T ss_pred ccCCC----------cceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec----CC------ccceeeeEECCC
Confidence 44433 4 78899999 999999999888899 9998876432 111 11 456899999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC----------cE
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG----------DF 579 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg----------~i 579 (762)
|++|++++ .++.|++||+.+++....+ .+| ...+.+++|||||++|++++.++ .|
T Consensus 390 G~~la~~~---------~~~~v~~~d~~tg~~~~~~-----~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i 454 (1045)
T 1k32_A 390 GKFAVVAN---------DRFEIMTVDLETGKPTVIE-----RSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 454 (1045)
T ss_dssp SSEEEEEE---------TTSEEEEEETTTCCEEEEE-----ECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred CCEEEEEC---------CCCeEEEEECCCCceEEec-----cCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence 99999998 7789999999988754433 357 77889999999999999887654 89
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe------------------
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV------------------ 640 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~------------------ 640 (762)
++||+.+++.... ..+...+..++|+|||++|++++ ++...+|+.....
T Consensus 455 ~l~d~~~g~~~~l------------~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1045)
T 1k32_A 455 HVYDMEGRKIFAA------------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 522 (1045)
T ss_dssp EEEETTTTEEEEC------------SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred EEEECCCCcEEEe------------eCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCC
Confidence 9999988763322 24567788999999999999887 6666666533221
Q ss_pred -------------------------EEEEeccccCceeEEEEeCCCCEEEE-----------EEcCCCCeEEEEECCCCc
Q 040987 641 -------------------------LVAVIGETLTPIMNMSFVGSSEYLVA-----------TSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 641 -------------------------~~~~l~~~~~~v~~~~~s~dg~~l~s-----------~~~d~~~~v~vwd~~~~~ 684 (762)
.+..+..|.+.+..++|+|||+++++ .+.++...|.+||+.+++
T Consensus 523 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~ 602 (1045)
T 1k32_A 523 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 602 (1045)
T ss_dssp CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred CCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc
Confidence 12233446677899999999988886 122333348999999988
Q ss_pred eee
Q 040987 685 ISW 687 (762)
Q Consensus 685 ~~~ 687 (762)
...
T Consensus 603 ~~~ 605 (1045)
T 1k32_A 603 VTE 605 (1045)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=304.43 Aligned_cols=314 Identities=12% Similarity=0.133 Sum_probs=248.7
Q ss_pred eeeeeeeccCcCeEEEEEcCCCcEE-EEeec---CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccce
Q 040987 272 VMRKITLHHTKKLTVLAFHPTQRIV-AAGDV---TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT 347 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (762)
.......+|...|.+++|+|+++.+ ++|+. ||.|++||+.+++... .
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-----------------------------~ 59 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-----------------------------L 59 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-----------------------------E
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-----------------------------e
Confidence 3445667899999999999999655 56665 8999999998765322 2
Q ss_pred eeeccccceeEEEEecC---CCEEEEEecCCeEEEEecCCCc-e-eccCCCCCCeEEEE------eCCCCCeEEEEecCC
Q 040987 348 TWHWHPSEVSVLIFSSD---GAYLYSGGKEGVLVVWQLDTGK-K-KFLPRIGSPLLYFT------ESPDPSLSSISCADN 416 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~i~~wd~~~~~-~-~~~~~~~~~v~~~~------~s~~~~~l~~~~~d~ 416 (762)
...+|...|.+++|+|+ +++|++++.|+.|++||+.+++ . ..+..|...|.++. |+|++++|++++.|+
T Consensus 60 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~ 139 (357)
T 3i2n_A 60 REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139 (357)
T ss_dssp EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS
T ss_pred eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCC
Confidence 23478999999999998 6999999999999999999887 3 45677889999994 578999999999999
Q ss_pred cEEEEEcCCce-EEEEEccCCCCCCCCCcccCceeeEE----EeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 417 QVHLLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIA----FNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 417 ~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
.|++||+.+++ ....+..+.... ...+.+++ |+|+++++++++.|+.|++||+.+++...... +
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~ 208 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQGEN------KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-----I 208 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTTSC------CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-----C
T ss_pred eEEEEeCCCCCCcceeccccCCCC------CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-----C
Confidence 99999999876 677776554211 14678887 78899999999999999999999876533321 1
Q ss_pred cCCCCcceeEEEEEEec---CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC
Q 040987 492 QPGDDVTVVVTLVALSQ---DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp---~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~ 568 (762)
...+.+++|+| ++++|++++ .++.|++||+.+++....+......+| ...|.+++|+|+++
T Consensus 209 ------~~~v~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 209 ------KNGVCSLEFDRKDISMNKLVATS---------LEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNR 272 (357)
T ss_dssp ------SSCEEEEEESCSSSSCCEEEEEE---------STTEEEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEE
T ss_pred ------CCceEEEEcCCCCCCCCEEEEEC---------CCCeEEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCC
Confidence 56799999999 999999998 889999999998877665554444588 89999999999998
Q ss_pred -eEEEEeCCCcEEEEEccccccccccc--------CCceeeeeecccCCCCeEEEEEcCCCcEEE-EEc-CCeEEEEeCC
Q 040987 569 -AAVSSSYGGDFKVWICNDELQQKDLQ--------SSGWSCHAVGSYKKKAMTAAAFSADGSVLA-VAA-ETVITLWDPD 637 (762)
Q Consensus 569 -~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~s~dg~~la-~~~-d~~i~iwd~~ 637 (762)
+|++++.||.|++||+..+....... ...+.+......|...|++++|+|+|++|+ +++ |+.|++||+.
T Consensus 273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 89999999999999998765442211 012234455667899999999999999998 677 9999999998
Q ss_pred CCeE
Q 040987 638 RNVL 641 (762)
Q Consensus 638 ~~~~ 641 (762)
+.+.
T Consensus 353 ~~~~ 356 (357)
T 3i2n_A 353 KLNK 356 (357)
T ss_dssp C---
T ss_pred Cccc
Confidence 7654
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.7e-35 Score=305.89 Aligned_cols=299 Identities=14% Similarity=0.148 Sum_probs=239.9
Q ss_pred eeeeeccCcCeEEEEEcCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 274 RKITLHHTKKLTVLAFHPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
...+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++... .....+|
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------------------~~~~~~h 117 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS----------------------------FIQGMGP 117 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE----------------------------EECCCST
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce----------------------------eeecCCc
Confidence 35667899999999999999 899999999999999997664321 1233469
Q ss_pred ccceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCC---CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 353 PSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPR---IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 353 ~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
...|.+++|+| ++++|++++.|+.|++||+.+.....+.. +...+.+++|+|++++|++++.|+.|++||+ +++.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 99999999999 78999999999999999999755544433 3478999999999999999999999999999 5778
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
+..+.+|. ..|.+++|+|+++ ++++++.|+.|++||+.+.+......... .| ...+.+++|+
T Consensus 197 ~~~~~~h~----------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~------~~~v~~~~~s 259 (383)
T 3ei3_B 197 IFKEKLHK----------AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PH------EKPVNAAYFN 259 (383)
T ss_dssp EEEEECSS----------SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-EC------SSCEEEEEEC
T ss_pred EEEeccCC----------CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cC------CCceEEEEEc
Confidence 88888877 7899999999999 89999999999999998743221211111 12 6779999999
Q ss_pred c-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe--ecCC---------CCCceEEEEEcCCCCeEEEEeC
Q 040987 508 Q-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV--YEPH---------RDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 508 p-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~h---------~~~~v~~~~~spd~~~l~~~~~ 575 (762)
| ++++|++++ .|+.|++||+.+++....+.... ...| +...+..++|+|++++ +++.
T Consensus 260 ~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 260 PTDSTKLLTTD---------QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp TTTSCEEEEEE---------SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred CCCCCEEEEEc---------CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 9 999999999 88999999999888766554211 0111 0234555777777777 7778
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCC
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDR 638 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~ 638 (762)
|+.|++||+.+++....+. ...+...+..++|+|+|++|++++|+.|++||+++
T Consensus 329 d~~i~iwd~~~~~~~~~l~---------~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 329 KRTIDIYDANSGGLVHQLR---------DPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp CCCEEEEETTTCCEEEEEC---------BTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred CCeEEEEecCCCceeeeec---------CCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 9999999999887765542 22356778888999999999999999999999875
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.2e-35 Score=306.41 Aligned_cols=304 Identities=14% Similarity=0.180 Sum_probs=240.2
Q ss_pred cccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceecc---CCCCCCeEEEEeCC-CCCeEEEEecCCc
Q 040987 343 ADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKFL---PRIGSPLLYFTESP-DPSLSSISCADNQ 417 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~d~~ 417 (762)
......+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++.... ..|...|.+++|+| ++++|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 34567788999999999999999 9999999999999999998877533 35888999999999 7899999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
|++||+.+ .....+..+.. +...+.+++|+|++++|++++.|+.|++||+. ++.+..+. .|
T Consensus 143 i~iwd~~~-~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~----~h------ 203 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDS-------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK----LH------ 203 (383)
T ss_dssp EEEEETTS-CEEEEEECCCC-------SSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE----CS------
T ss_pred EEEEECCC-CceEEEeccCC-------CCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec----cC------
Confidence 99999996 55555554432 23679999999999999999999999999994 44444433 22
Q ss_pred ceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeC
Q 040987 498 TVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSY 575 (762)
Q Consensus 498 ~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~ 575 (762)
...|.+++|+|+++ +|++++ .|+.|++||+.+.+....+... .+| ...|.+++|+| ++++|++++.
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~--~~~-~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSS---------VDATVKLWDLRNIKDKNSYIAE--MPH-EKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEE---------TTSEEEEEEGGGCCSTTCEEEE--EEC-SSCEEEEEECTTTSCEEEEEES
T ss_pred CCcEEEEEECCCCCCEEEEEe---------CCCEEEEEeCCCCCcccceEEE--ecC-CCceEEEEEcCCCCCEEEEEcC
Confidence 67899999999999 899998 8999999999984432111111 257 88999999999 9999999999
Q ss_pred CCcEEEEEcccccccccccCCc-ee-----eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-
Q 040987 576 GGDFKVWICNDELQQKDLQSSG-WS-----CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE- 647 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~- 647 (762)
|+.|++||+.++.....+.... .. .....-.....+..++|+|||++ +++ |+.|++||+.+++++..+.+
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence 9999999999877654432000 00 00000011245556778888877 566 99999999999999999987
Q ss_pred -ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 648 -TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 648 -~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
|...+..++|+||+++|++++ |+. |++||+++
T Consensus 350 ~~~~~~~~~~~s~~g~~l~s~s-d~~--i~iw~~~~ 382 (383)
T 3ei3_B 350 NAAGIISLNKFSPTGDVLASGM-GFN--ILIWNRED 382 (383)
T ss_dssp TBCSCCCEEEECTTSSEEEEEE-TTE--EEEEECC-
T ss_pred CCCceEEEEEEecCccEEEEec-CCc--EEEEecCC
Confidence 456688889999999999997 877 99999875
No 70
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.1e-35 Score=302.38 Aligned_cols=300 Identities=13% Similarity=0.108 Sum_probs=224.2
Q ss_pred cCcCeEEEEEcCCCcEEEEeecC-------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVT-------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
-..+|++++|+||+++|++|+.+ +.|++|++............ ......+.+|
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~--------------------~~~~~~l~~~ 72 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH--------------------ILSEFALEDN 72 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE--------------------EEEEEECCTT
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee--------------------eeeEEEccCC
Confidence 34689999999999999998753 36999998655321100000 0011346678
Q ss_pred ccceeEEEEecCCCEEEEEe-----------cCCeEEEEecCCCcee----------ccCCCCCCeEEEEeCCCCCeEEE
Q 040987 353 PSEVSVLIFSSDGAYLYSGG-----------KEGVLVVWQLDTGKKK----------FLPRIGSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~-----------~dg~i~~wd~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~ 411 (762)
...|.+++++ ++.++++. .|+.+++|++.+.... ....+...+.+++|||||+++++
T Consensus 73 ~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~ 150 (365)
T 4h5i_A 73 DDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAI 150 (365)
T ss_dssp SCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEE
T ss_pred CCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEE
Confidence 8888887764 55666653 4678999998765421 11223446889999999999876
Q ss_pred Ee--cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecc
Q 040987 412 SC--ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 412 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 489 (762)
++ .|+.|++||+.+++.+..+. |. +.|.+++|+|||+++++++.+ .+++|+..++....... ..
T Consensus 151 as~~~d~~i~iwd~~~~~~~~~~~-~~----------~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~--~~ 216 (365)
T 4h5i_A 151 ASSKVPAIMRIIDPSDLTEKFEIE-TR----------GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT--DF 216 (365)
T ss_dssp EESCSSCEEEEEETTTTEEEEEEE-CS----------SCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC--CC
T ss_pred EECCCCCEEEEeECCCCcEEEEeC-CC----------CceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee--cC
Confidence 55 68999999999999988875 33 578999999999999998865 47777777766543322 12
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
.| ...+.+++|+|+++++++++.+ + +....+++|+........ .....+.+| ...|++++|+|||++
T Consensus 217 ~~------~~~v~~v~fspdg~~l~~~s~d----~-~~~~~i~~~~~~~~~~~~-~~~~~~~~~-~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 217 DK------NWSLSKINFIADDTVLIAASLK----K-GKGIVLTKISIKSGNTSV-LRSKQVTNR-FKGITSMDVDMKGEL 283 (365)
T ss_dssp CT------TEEEEEEEEEETTEEEEEEEES----S-SCCEEEEEEEEETTEEEE-EEEEEEESS-CSCEEEEEECTTSCE
T ss_pred CC------CCCEEEEEEcCCCCEEEEEecC----C-cceeEEeecccccceecc-eeeeeecCC-CCCeEeEEECCCCCc
Confidence 22 6789999999999999999832 0 012378889988765432 222334678 889999999999999
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
||+|+.|++|+|||+.+++.+..+ ..+|...|++++|||||++||+++ |++|+|||+..
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~----------~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIF----------KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE----------TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEe----------cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999988766543 357999999999999999999999 99999999864
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=311.85 Aligned_cols=323 Identities=14% Similarity=0.150 Sum_probs=248.0
Q ss_pred CCeEEEEecCCcc-eeeeecCcccccCCceeec-CCCEEEEEe-CCEEEEEEcccceEEeeec-------------CCcc
Q 040987 52 SGLCRTAEYPAVN-SKMIRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSLE-------------GHKA 115 (762)
Q Consensus 52 ~g~i~~~~~~~~~-~~~~~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~~~~~~~l~-------------~h~~ 115 (762)
++.+++|++...+ ...+.+|.+.|.+ ++|+| ++++||+++ ||.|+|||+.+++....+. +|..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINT-LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEE-EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCCcEEE-EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 4556788877544 4456889999998 99999 999999999 7999999999887655543 6999
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeee
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVED 195 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (762)
.|.+++|+|++. .+|++++.|+.|++||+.+++....+..
T Consensus 101 ~v~~~~~~~~~~------~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------------------------- 140 (408)
T 4a11_B 101 SVETVQWYPHDT------GMFTSSSFDKTLKVWDTNTLQTADVFNF---------------------------------- 140 (408)
T ss_dssp CEEEEEECTTCT------TCEEEEETTSEEEEEETTTTEEEEEEEC----------------------------------
T ss_pred cEEEEEEccCCC------cEEEEEeCCCeEEEeeCCCCccceeccC----------------------------------
Confidence 999999999443 6889999999999999999887766543
Q ss_pred ccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC---CCCEEE-EEeCCeEEEEEccCchhhhh
Q 040987 196 TRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS---SGKYFG-IRKQRKLLIWKVPDVEAERV 271 (762)
Q Consensus 196 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~la-~~~~~~i~iwd~~~~~~~~~ 271 (762)
...+.+++++| ++.+++ ++.++.|++||+.+++..
T Consensus 141 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-- 179 (408)
T 4a11_B 141 ---------------------------------------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-- 179 (408)
T ss_dssp ---------------------------------------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC--
T ss_pred ---------------------------------------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee--
Confidence 23345556666 445777 457899999999988765
Q ss_pred eeeeeeeccCcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCcee-ecccccccccccccccCCCCcccCCccccceee
Q 040987 272 VMRKITLHHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTF-ATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW 349 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (762)
..+..|...|.+++|+|+++ .|++++.||.|++||+...... ...... ............
T Consensus 180 ---~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 241 (408)
T 4a11_B 180 ---HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH---------------NGKKSQAVESAN 241 (408)
T ss_dssp ---EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT---------------TTCSCCCTTTSS
T ss_pred ---eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc---------------ccccceeecccc
Confidence 56678999999999999998 5889999999999999765421 100000 000111223445
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR------IGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
..|...|.+++|+|++++|++++.|+.|++||+.+++...... ....+........+..+++++.++.|++||+
T Consensus 242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence 6799999999999999999999999999999999887643211 1112222333344566777789999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
.+++.+..+.+|. +.|.+++|+|++++|++++.||.|++||+.+.+.+...
T Consensus 322 ~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 322 YSGEQITMLKGHY----------KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp TTCCEEEEECCCS----------SCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred cCCcceeeeccCC----------CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 9999999999887 78999999999999999999999999999988765443
No 72
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.5e-35 Score=303.04 Aligned_cols=292 Identities=14% Similarity=0.126 Sum_probs=220.9
Q ss_pred ccccCCceeecCCCEEEEEeC--------CEEEEEEcccceE----------EeeecCCccceeEEEEeCCCCccccee-
Q 040987 73 SYVSSPPAFSNDVKRLLVCTS--------NTVSIFSTSTGLQ----------ISSLEGHKAPVTTVIVVPASTPATKIL- 133 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~~--------~~i~iwd~~~~~~----------~~~l~~h~~~V~~v~~s~~~~~~~~l~- 133 (762)
-+|.+ ++|+|||++||+|++ +.|+||++..+.. ...|.+|...|.+++++++. ++
T Consensus 15 ~PV~s-v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~-----~~~ 88 (365)
T 4h5i_A 15 YPAYG-AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGI-----ILV 88 (365)
T ss_dssp SCEEE-EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTE-----EEE
T ss_pred CCEEE-EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCE-----EEE
Confidence 46887 999999999999973 2699999865431 13577899999999876542 00
Q ss_pred ------eeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 134 ------SYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 134 ------~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
..|++++.|+++++|++.++.....+. ....+
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~-----~~~~~------------------------------------- 126 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL-----TSVDF------------------------------------- 126 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE-----EEECS-------------------------------------
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEe-----eeece-------------------------------------
Confidence 123344556667777665433211110 00000
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE---eCCeEEEEEccCchhhhheeeeeeeccCcCe
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR---KQRKLLIWKVPDVEAERVVMRKITLHHTKKL 284 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 284 (762)
.....+...+.+++|||||++||++ .|+.|+|||+.+++.. ....|...|
T Consensus 127 ---------------------~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~------~~~~~~~~V 179 (365)
T 4h5i_A 127 ---------------------DASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK------FEIETRGEV 179 (365)
T ss_dssp ---------------------SCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE------EEEECSSCC
T ss_pred ---------------------eecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE------EEeCCCCce
Confidence 0112234567899999999998743 4799999999998753 223578889
Q ss_pred EEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC
Q 040987 285 TVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD 364 (762)
Q Consensus 285 ~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 364 (762)
.+++|+|||++|++++.++ +.+|+..+++... .....+|...|.+++|+|+
T Consensus 180 ~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~----------------------------~~~~~~~~~~v~~v~fspd 230 (365)
T 4h5i_A 180 KDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA----------------------------RKTDFDKNWSLSKINFIAD 230 (365)
T ss_dssp CEEEECTTSSEEEEECSSC-EEEEETTTCCEEE----------------------------EECCCCTTEEEEEEEEEET
T ss_pred EEEEEccCCceEEecccee-EEEEEeccCccee----------------------------eeecCCCCCCEEEEEEcCC
Confidence 9999999999999998555 6666655543321 1345668889999999999
Q ss_pred CCEEEEEecCC----eEEEEecCCCce-----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE-cc
Q 040987 365 GAYLYSGGKEG----VLVVWQLDTGKK-----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI-SG 434 (762)
Q Consensus 365 g~~l~s~~~dg----~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~ 434 (762)
++++++++.|+ .+++|++..... ..+..+...|.+++|+|||++|++++.|+.|+|||+.+++++..+ .+
T Consensus 231 g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 231 DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence 99999999887 688899877654 235677889999999999999999999999999999999999875 67
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
|. ..|.+++|+|||++|++++.|++|+|||+...
T Consensus 311 H~----------~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 311 HS----------FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SS----------SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cc----------CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 77 78999999999999999999999999999654
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-36 Score=317.12 Aligned_cols=340 Identities=10% Similarity=0.166 Sum_probs=257.0
Q ss_pred EEecCCcceeee-ecCcccccCCceeec-CCCEEEEEe-CCEEEEEEccc---ce---EEeeecCCccceeEEEEeCCCC
Q 040987 57 TAEYPAVNSKMI-RGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTST---GL---QISSLEGHKAPVTTVIVVPAST 127 (762)
Q Consensus 57 ~~~~~~~~~~~~-~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~---~~---~~~~l~~h~~~V~~v~~s~~~~ 127 (762)
.|+........+ .+|.+.|.+ ++|+| |+++||+|+ |+.|+|||+.+ +. ....+ +|...|++++|+|++
T Consensus 47 ~w~~~g~~~~~~~~~h~~~V~~-~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~- 123 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPNSITS-SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNF- 123 (437)
T ss_dssp GGGCCCCEEEEECTTTTSCEEE-EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTS-
T ss_pred cccccceEEeeeccCCCCceEE-EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCC-
Confidence 488666666667 889999998 99999 999999999 79999999987 44 22333 599999999999999
Q ss_pred cccceeeeEEeeecCCeEEEEeCC---CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCc
Q 040987 128 PATKILSYCWTASLDGTIKYWDFS---VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHK 204 (762)
Q Consensus 128 ~~~~l~~~l~s~s~d~~i~vWd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
.+|++++.|++|++||+. +++.+..+..+ .+..+.+.
T Consensus 124 ------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~--------------------------------- 163 (437)
T 3gre_A 124 ------DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLK--------------------------------- 163 (437)
T ss_dssp ------SEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGG---------------------------------
T ss_pred ------CEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEcc---------------------------------
Confidence 688999999999999995 77777766654 34433220
Q ss_pred cCCCCCCccccEEEEecCCccccceeeeccCCCceEEE--ECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeec--
Q 040987 205 KEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVIT--ISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLH-- 279 (762)
Q Consensus 205 ~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~-- 279 (762)
..++...+.++. ++|++++|+++ .|+.|++||+.+++.. ..+..
T Consensus 164 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~ 212 (437)
T 3gre_A 164 --------------------------NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL-----QIIENSP 212 (437)
T ss_dssp --------------------------GGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE-----EEEECCG
T ss_pred --------------------------CcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee-----EEEccCC
Confidence 000344566666 77999999855 7899999999988754 44445
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccccceeE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSV 358 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~ 358 (762)
|...|.+++|+|++++|++|+.||.|++||+..++.+ ..+. .|...|.+
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------~~~~~~~~~~v~~ 262 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI------------------------------RSWSFGDHAPITH 262 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE------------------------------EEEBCTTCEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE------------------------------EEEecCCCCceEE
Confidence 8899999999999999999999999999999776433 4443 67778999
Q ss_pred EEEe----cCCCEEEEEecCCeEEEEecCCCceec-cC--------------------------CCCCCeEEEEeCCCCC
Q 040987 359 LIFS----SDGAYLYSGGKEGVLVVWQLDTGKKKF-LP--------------------------RIGSPLLYFTESPDPS 407 (762)
Q Consensus 359 ~~~s----~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~--------------------------~~~~~v~~~~~s~~~~ 407 (762)
++|+ +++.+|++++.|+.|++||+.+++... +. .+...|.+++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 9665 568899999999999999999887532 11 145568899999 789
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
+|++++.|+.|++||+.+++....+.++.... ..+....++++..+++.. ++..........
T Consensus 342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--- 403 (437)
T 3gre_A 342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFS-------DVFIPTQVTANLTMLLRK--------MKRTSTHSVDDS--- 403 (437)
T ss_dssp EEEEEGGGTEEEEEETTCGGGCEEEECC--CC-------CEEEEEEEETTEEEEEEE--------CC-------------
T ss_pred EEEecCCCCeEEEEECCCcccceEEecccccC-------ceEEEEEeecceEEEEEe--------cccccccccCcc---
Confidence 99999999999999999999888888765322 455666677665554443 222222211111
Q ss_pred cccccCCCCcceeEEEEEEecC--CCeEEEEeeeccccCCCceeEEEEEE
Q 040987 488 ERNHQPGDDVTVVVTLVALSQD--GSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
.. |...|.+++|+++ +.+|++++ .||.|++|+
T Consensus 404 -~~------h~~~I~~i~~~~~~~~~~l~s~~---------~dG~I~iw~ 437 (437)
T 3gre_A 404 -LY------HHDIINSISTCEVDETPLLVACD---------NSGLIGIFQ 437 (437)
T ss_dssp ----------CCCEEEEEEEESSSSEEEEEEE---------TTSCEEEEC
T ss_pred -cc------cccceeeEeeeccCCceEEEEEc---------CCceEEEeC
Confidence 11 2778999999998 77999999 899999995
No 74
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.6e-36 Score=313.63 Aligned_cols=370 Identities=14% Similarity=0.137 Sum_probs=253.6
Q ss_pred CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccC
Q 040987 255 QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEE 333 (762)
Q Consensus 255 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (762)
+..+++|++...+.. ....+|.+.|++++|+| ++++|++|+.||.|++||+.+++...........
T Consensus 22 ~~~~~v~~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------- 88 (408)
T 4a11_B 22 ESTRRVLGLELNKDR-----DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC-------- 88 (408)
T ss_dssp HHHHHHHTEEECTTE-----EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE--------
T ss_pred cCcceeeccccCcce-----eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc--------
Confidence 345667776666544 66778999999999999 9999999999999999999776432211000000
Q ss_pred CCCcccCCccccceeeeccccceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC---CCeE
Q 040987 334 RPGVRDNDDADLCTTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD---PSLS 409 (762)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~---~~~l 409 (762)
........+|...|.+++|+| ++++|++++.|+.|++||+.+++......+...+.++.+++. +.++
T Consensus 89 ---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 89 ---------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp ---------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEE
T ss_pred ---------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEE
Confidence 000011235999999999999 778999999999999999999998777778889999999884 4599
Q ss_pred EEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCcee-eEEee
Q 040987 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGIS-EVQVC 487 (762)
Q Consensus 410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~ 487 (762)
++++.++.|++||+.+++.+..+.+|. ..|.+++|+|+++ ++++++.||.|++||++++.... .+...
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHR----------QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCC----------SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCC----------CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 999999999999999999888888876 7899999999998 58899999999999998765322 21110
Q ss_pred c-----ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEE
Q 040987 488 E-----RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA 562 (762)
Q Consensus 488 ~-----~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~ 562 (762)
. ........|...|.+++|+|++++|++++ .|+.|++||+.+++............. ...+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG---------TDNRMRLWNSSNGENTLVNYGKVCNNS-KKGLKFTV 299 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCCBCCCCCCCCCCCC-SSCCCCEE
T ss_pred ccccceeeccccccccCceeEEEEcCCCCEEEEec---------CCCeEEEEECCCCccceeccccccccc-cccceeEE
Confidence 0 00011133478899999999999999999 889999999998876544322111111 22233333
Q ss_pred EcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 563 FHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 563 ~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
....+..+++++.++.|++||+.+++....+ ..|...|++++|+|++++|++++ ||.|++||+.+++.
T Consensus 300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITML-----------KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp CCSSSSCEEEEEETTEEEEEETTTCCEEEEE-----------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ecCCCceEEEEecCCEEEEEECcCCcceeee-----------ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 3344566777788999999999988766554 46889999999999999999998 99999999999988
Q ss_pred EEEeccccCceeEEEEeC-CCCEEEEEEcCCCCeEEEEECCC
Q 040987 642 VAVIGETLTPIMNMSFVG-SSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 642 ~~~l~~~~~~v~~~~~s~-dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.....+.. ...+.+ +...+.+.+.|+. +++|+...
T Consensus 369 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~W~~~~ 405 (408)
T 4a11_B 369 VPDDDETTT---KSQLNPAFEDAWSSSDEEGG--TSAWSHPQ 405 (408)
T ss_dssp ------------------------------------------
T ss_pred cCCCCceEe---ccccccccceeecccCccCc--eeecCCcc
Confidence 766543322 233344 3344556667777 99998653
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.9e-35 Score=301.67 Aligned_cols=298 Identities=11% Similarity=0.133 Sum_probs=247.6
Q ss_pred eeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEe
Q 040987 231 TLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWR 309 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~ 309 (762)
...|...|.+++|+|++++|+++ .++.|++||+.+++. .....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 44588999999999999999976 899999999998752 12256678999999999999999999999999999999
Q ss_pred ccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--
Q 040987 310 GFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-- 387 (762)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-- 387 (762)
+.+++... ...+..|...|.+++|+|++++|++++.|+.|++||++.+..
T Consensus 81 ~~~~~~~~----------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 81 LKGRTWKP----------------------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp EETTEEEE----------------------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CCCCeeee----------------------------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 97664221 234467889999999999999999999999999999998762
Q ss_pred ---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc------------------CCceEEEEEccCCCCCCCCCccc
Q 040987 388 ---KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM------------------PSMEIIRSISGIKLPCPLPEEYK 446 (762)
Q Consensus 388 ---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~~~~~~~~~ 446 (762)
.....|...+.+++|+|+++++++++.|+.|++||+ ..++.+..+.+|.
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 202 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---------- 202 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS----------
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC----------
Confidence 233567889999999999999999999999999995 4677888887766
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
..+.+++|+|++++|++++.|+.|++||+.+++.+..+... ...+.+++|+|++++++++
T Consensus 203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~---------- 262 (372)
T 1k8k_C 203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE----------TLPLLAVTFITESSLVAAG---------- 262 (372)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS----------SCCEEEEEEEETTEEEEEE----------
T ss_pred CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC----------CCCeEEEEEecCCCEEEEE----------
Confidence 78999999999999999999999999999988877665432 5679999999999988877
Q ss_pred ceeEEEEEEecC--CCce----------------------------eEEE------EEeecCCCCCceEEEEEc-CCC--
Q 040987 527 SLVCLKFWVSGT--QNKE----------------------------FTLS------TIVYEPHRDAGISAVAFH-PNR-- 567 (762)
Q Consensus 527 ~d~~i~iwd~~~--~~~~----------------------------~~~~------~~~~~~h~~~~v~~~~~s-pd~-- 567 (762)
.|+.|++|++.. +... .... .....+| ...|++++|+ ++|
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~ 341 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAK 341 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTS
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcc
Confidence 678999999988 3100 0000 1112488 8999999966 676
Q ss_pred -CeEEEEeCCCcEEEEEccccccc
Q 040987 568 -RAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 568 -~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
++|++++.||.|++||+.+++..
T Consensus 342 ~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 342 CSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp CSEEEEEETTSEEEEEEHHHHHHH
T ss_pred eeeEEEecCCCceEEEEecChhHh
Confidence 99999999999999999876544
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-35 Score=306.87 Aligned_cols=328 Identities=13% Similarity=0.156 Sum_probs=256.8
Q ss_pred eeeeccCcCeEEEEEcCC----CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceee-
Q 040987 275 KITLHHTKKLTVLAFHPT----QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW- 349 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~----~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 349 (762)
....+|...|.+++|+|+ ...+++++.++.|++|++.+++.... +...
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~---------------------------~~~~~ 64 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL---------------------------LQSYV 64 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE---------------------------EEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe---------------------------eeecc
Confidence 455689999999999984 45666777788999999976644321 1111
Q ss_pred -eccccceeEEEEecC----CCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEE
Q 040987 350 -HWHPSEVSVLIFSSD----GAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESP-DPSLSSISCADNQVHLLK 422 (762)
Q Consensus 350 -~~h~~~v~~~~~s~~----g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d 422 (762)
..|...|.+++|+|+ +++|++++.|+.|++||+.+++... +..|...|.+++|+| ++++|++++.|+.|++||
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 65 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 126678999999999 6799999999999999999988754 556889999999999 999999999999999999
Q ss_pred cCCceEEEEE---ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 423 MPSMEIIRSI---SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 423 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
+.+++.+..+ .+|. ..|.+++|+|++++|++++.||.|++||+.+++....+..
T Consensus 145 ~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------- 201 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHR----------DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE------------- 201 (366)
T ss_dssp TTTTEEEEEECSTTSCS----------SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH-------------
T ss_pred eecCeEEEEeccccccc----------CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce-------------
Confidence 9999998888 4554 7899999999999999999999999999987654433211
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcE
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDF 579 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i 579 (762)
.+.++|++..++... .......+ ....+| ...|.+++|+ ++++++++.|+.|
T Consensus 202 ---~~~~~~~~~~~~~~~---------~~~~~~~~-------------~~~~~~-~~~v~~~~~~--~~~l~~~~~d~~i 253 (366)
T 3k26_A 202 ---SYDYNPNKTNRPFIS---------QKIHFPDF-------------STRDIH-RNYVDCVRWL--GDLILSKSCENAI 253 (366)
T ss_dssp ---HHTCCGGGCSSCCCC---------EEECCCSE-------------EECSSC-SSCCCEEEEE--TTEEEEECSSSEE
T ss_pred ---eEEecCCCCcccccc---------eeeccCcc-------------ccccCC-cceEEEEEEc--CCEEEEEecCCEE
Confidence 335566666555543 11100000 112457 8899999998 7799999999999
Q ss_pred EEEEccccccccccc---CCceeeeeecccCCCCeEEEEEcCC--CcEEEEEc-CCeEEEEeCCCCe----EEEEeccc-
Q 040987 580 KVWICNDELQQKDLQ---SSGWSCHAVGSYKKKAMTAAAFSAD--GSVLAVAA-ETVITLWDPDRNV----LVAVIGET- 648 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~d--g~~la~~~-d~~i~iwd~~~~~----~~~~l~~~- 648 (762)
++||+.++....... ............|...|++++|+|+ +++|++++ ||.|++||+.+++ ....+.+|
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 999998765422111 1122334455678889999999999 99999998 9999999999875 44577777
Q ss_pred -cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 649 -LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 649 -~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
...|.+++|+|++++|++++.||. |++||+.+
T Consensus 334 ~~~~v~~~~~s~~~~~l~s~~~dg~--i~iwd~~~ 366 (366)
T 3k26_A 334 CGAAIRQTSFSRDSSILIAVCDDAS--IWRWDRLR 366 (366)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSE--EEEEEC--
T ss_pred cCCceEEEEeCCCCCeEEEEeCCCE--EEEEEecC
Confidence 789999999999999999999998 99999863
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-34 Score=304.03 Aligned_cols=286 Identities=16% Similarity=0.208 Sum_probs=239.1
Q ss_pred ccCCceeecCCCEEEEEeCCEEEEEEcccceEEeee--cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 75 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSL--EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 75 v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l--~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
... ++||+++ +||+|.|++|+|||+++|++++.+ .+|...|++|+|+|+| .+|++|+.|++|+|||+.+
T Consensus 108 ~~~-l~wS~~n-~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-------~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 108 LNL-VDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-------NYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp CBC-EEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-------SEEEEEETTSCEEEEETTT
T ss_pred cee-EEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-------CEEEEEECCCeEEEEEcCC
Confidence 454 9999864 899999999999999999988765 4678889999999999 7899999999999999999
Q ss_pred cceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee
Q 040987 153 PELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL 232 (762)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 232 (762)
+++++.+..|
T Consensus 179 ~~~~~~~~~h---------------------------------------------------------------------- 188 (420)
T 4gga_A 179 QKRLRNMTSH---------------------------------------------------------------------- 188 (420)
T ss_dssp TEEEEEECCC----------------------------------------------------------------------
T ss_pred CcEEEEEeCC----------------------------------------------------------------------
Confidence 9887766543
Q ss_pred ccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 233 AEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
...+.++++ ++++|++ +.++.+.+||...... ....+.+|...+..+.|+|+++++++++.|+.+++|+..
T Consensus 189 --~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~----~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 189 --SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp --SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred --CCceEEEee--CCCEEEEEeCCCceeEeeecccce----eeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 334444444 5678875 4789999999887653 235567899999999999999999999999999999987
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEEE--EecCCeEEEEecCCCcee
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLYS--GGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s--~~~dg~i~~wd~~~~~~~ 388 (762)
.++... ..+.....|...|.+++|+|++. .+++ |+.|++|++||+.+++..
T Consensus 261 ~~~~~~--------------------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 261 PGEGGW--------------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp CCSSCS--------------------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred cccccc--------------------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 654221 23456778999999999999764 4554 457899999999999988
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEe--cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISC--ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
........+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|. +.|.+++|+|||++|++++.
T Consensus 315 ~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~----------~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT----------SRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS----------SCEEEEEECTTSSCEEEEET
T ss_pred eeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC----------CCEEEEEEcCCCCEEEEEec
Confidence 7777778899999999999988865 68999999999999999999987 78999999999999999999
Q ss_pred CceEEEEEcCCCCceee
Q 040987 467 NYCIHFYSLLDDRGISE 483 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~ 483 (762)
|++|++||+.......+
T Consensus 385 D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 385 DETLRLWRCFELDPARR 401 (420)
T ss_dssp TTEEEEECCSCSSCC--
T ss_pred CCeEEEEECCCCCccch
Confidence 99999999977654433
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.1e-35 Score=305.69 Aligned_cols=316 Identities=12% Similarity=0.138 Sum_probs=247.9
Q ss_pred eeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 273 MRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 273 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
....+.+|.+.|++++|+| ++|++++.||.|++|++.+++... .......+.+|
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~------------------------~~~~~~~~~~h 61 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN------------------------PKDKSYSHFVH 61 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC------------------------GGGGEEEEECC
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc------------------------CCCcceEEecC
Confidence 3456779999999999998 799999999999999997664111 11245677899
Q ss_pred ccceeEEEEecC----C---CEEEEEecCCeEEEEecCCCc------eeccCCC-----CCCeEEEEeC----CCCCe-E
Q 040987 353 PSEVSVLIFSSD----G---AYLYSGGKEGVLVVWQLDTGK------KKFLPRI-----GSPLLYFTES----PDPSL-S 409 (762)
Q Consensus 353 ~~~v~~~~~s~~----g---~~l~s~~~dg~i~~wd~~~~~------~~~~~~~-----~~~v~~~~~s----~~~~~-l 409 (762)
...|.+++|+|+ + ++|++++.|+.|++||+.+++ ...+..+ ...|.+++|+ |++++ |
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 141 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 141 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEE
Confidence 999999999999 9 999999999999999999887 4455666 4899999999 99999 9
Q ss_pred EEEecCCcEEEEEcCC------ceEEE-----EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 410 SISCADNQVHLLKMPS------MEIIR-----SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 410 ~~~~~d~~i~i~d~~~------~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
++++.++.|++||+.+ ++.+. .+.+. ......+...+.+++|+|++ ++++++.|+.|++||+.++
T Consensus 142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT---VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE---ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred EEEeCCCcEEEEeCCccccccccceeeccCcceeeee---eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 9999999999999988 55554 55320 00001123788999999999 9999999999999999988
Q ss_pred CceeeEEeecccccCCCCc---ceeEEEEEEecCCCeEEEEeeeccccCCCce---eEEEEEEecCCCceeEEEEEeecC
Q 040987 479 RGISEVQVCERNHQPGDDV---TVVVTLVALSQDGSLMSTVDIKLAEEGIGSL---VCLKFWVSGTQNKEFTLSTIVYEP 552 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~ 552 (762)
+.+..+... ..| ...+.+++|+|++++|++++ .+ +.|++||+.+++....+ .+
T Consensus 218 ~~~~~~~~~-------~~h~~~~~~i~~i~~~~~~~~l~~~~---------~d~~~g~i~i~d~~~~~~~~~~-----~~ 276 (397)
T 1sq9_A 218 RPLYNFESQ-------HSMINNSNSIRSVKFSPQGSLLAIAH---------DSNSFGCITLYETEFGERIGSL-----SV 276 (397)
T ss_dssp EEEEEEECC-------C---CCCCCEEEEEECSSTTEEEEEE---------EETTEEEEEEEETTTCCEEEEE-----CB
T ss_pred ceeEEEecc-------ccccccCCccceEEECCCCCEEEEEe---------cCCCCceEEEEECCCCccccee-----cc
Confidence 766655431 012 45699999999999999998 78 99999999988776655 34
Q ss_pred -------------CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee-ee---------eecccCCC
Q 040987 553 -------------HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS-CH---------AVGSYKKK 609 (762)
Q Consensus 553 -------------h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~---------~~~~~~~~ 609 (762)
| ...|.+++|+|++++|++++.|+.|++||+.+++....+...... .+ .....|..
T Consensus 277 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 355 (397)
T 1sq9_A 277 PTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 355 (397)
T ss_dssp C--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred Cccccccccccccc-CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCC
Confidence 7 889999999999999999999999999999988766554200000 00 00111388
Q ss_pred CeEEEEEcCCC----------cEEEEEc-CCeEEEEeCCCCe
Q 040987 610 AMTAAAFSADG----------SVLAVAA-ETVITLWDPDRNV 640 (762)
Q Consensus 610 ~i~~~~~s~dg----------~~la~~~-d~~i~iwd~~~~~ 640 (762)
.|++++|+|+| ++|++++ ||.|++||+++|+
T Consensus 356 ~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 356 GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999999998 7999998 9999999998764
No 79
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-37 Score=316.13 Aligned_cols=322 Identities=10% Similarity=-0.015 Sum_probs=250.6
Q ss_pred cCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 234 EMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
-..+|.+++|||||+++|++ .|++|+ |...++ ...+|...|.+++|+|+| .++.+.+|+.+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc--------eecCCCccEEEEEECCCC-------CcceEEEEeCCC
Confidence 35789999999999999965 788898 644443 236899999999999999 466666665433
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR 392 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~ 392 (762)
... ..+ .|...|.+++|+|||++|++++.||.|++||.++ ....+.
T Consensus 77 ~~~-------------------------------~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~- 122 (588)
T 2j04_A 77 NGL-------------------------------LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD- 122 (588)
T ss_dssp SCS-------------------------------STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-
T ss_pred ceE-------------------------------eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-
Confidence 221 111 3578899999999999999999999999999654 222233
Q ss_pred CCC-----CeEEEEeCCCCCeEEEEecCCcEEEEEcCCce-------EEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 393 IGS-----PLLYFTESPDPSLSSISCADNQVHLLKMPSME-------IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 393 ~~~-----~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
+.. .+.+++|||||++|++++.||+|++||+.++. .+.++..+.. .|...|.+++|+|||
T Consensus 123 ~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~------gh~~~V~sVawSPdg-- 194 (588)
T 2j04_A 123 SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDA------GSKDWVTHIVWYEDV-- 194 (588)
T ss_dssp CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCT------TCCCCEEEEEEETTE--
T ss_pred CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccc------cccccEEEEEEcCCc--
Confidence 443 59999999999999999999999999999875 3566633221 123799999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+++++.|+.+++||+.++............| ...|.+++|+ |+.||+++ ++.|++||+.+++
T Consensus 195 Laass~D~tVrlWd~~~~~~~~~~~tL~~~h------~~~V~svaFs--g~~LASa~----------~~tIkLWd~~~~~ 256 (588)
T 2j04_A 195 LVAALSNNSVFSMTVSASSHQPVSRMIQNAS------RRKITDLKIV--DYKVVLTC----------PGYVHKIDLKNYS 256 (588)
T ss_dssp EEEEETTCCEEEECCCSSSSCCCEEEEECCC------SSCCCCEEEE--TTEEEEEC----------SSEEEEEETTTTE
T ss_pred EEEEeCCCeEEEEECCCCccccceeeecccc------cCcEEEEEEE--CCEEEEEe----------CCeEEEEECCCCe
Confidence 8888999999999998876321011111122 5679999999 68888885 4899999999875
Q ss_pred ceeEEEEEeecCCCCCceEEEEE--cCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC
Q 040987 541 KEFTLSTIVYEPHRDAGISAVAF--HPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA 618 (762)
Q Consensus 541 ~~~~~~~~~~~~h~~~~v~~~~~--spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 618 (762)
..... .+| ...|.+++| +||+..+++++.||+ ++|..+ .++++|
T Consensus 257 ~~~~~-----~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------------------~~~~sp 302 (588)
T 2j04_A 257 ISSLK-----TGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------------------ELHVTA 302 (588)
T ss_dssp EEEEE-----CSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------------------SEEEEC
T ss_pred EEEEE-----cCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------------------cEEECC
Confidence 53221 378 899999999 999999999999999 999874 156999
Q ss_pred CCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 619 DGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 619 dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
|+..+++. |+++++|+...+. +..+++ ...|.+++|||||+.+|+++.
T Consensus 303 d~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 303 DNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 99888775 9999999987654 445554 667999999999999999864
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.2e-35 Score=312.43 Aligned_cols=304 Identities=13% Similarity=0.151 Sum_probs=229.5
Q ss_pred ccceeeeccccceeEEEEec-CCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCC-CCCeEEEEecCCcE
Q 040987 344 DLCTTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESP-DPSLSSISCADNQV 418 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i 418 (762)
.......+|...|++++|+| ++++|++|+.||+|++||+.+++. ....+|...|.+++|+| ++++|++++.|+.|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 34456678999999999999 567999999999999999987764 24567889999999998 68999999999999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
++||++++........+. +...+.+++|+|++++|++++.||.|++||+... .+..+ .. |.
T Consensus 190 ~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~----~~------h~ 250 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDT--------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL----RM------HK 250 (435)
T ss_dssp EEEETTSCEEEEEECCSS--------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS----BC------CS
T ss_pred EEeeccCCceeEEeccCC--------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE----ec------cc
Confidence 999998765444333332 1246789999999999999999999999998653 22222 22 26
Q ss_pred eeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 499 VVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 499 ~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
..|.+++|+|++. +|++++ .|+.|++||+.+.+....+.. ..+| ...|++++|+|+|++|++++.||
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s---------~d~~v~iwd~~~~~~~~~~~~--~~~h-~~~v~~~~~spdg~~l~s~~~D~ 318 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATAS---------VDQTVKIWDLRQVRGKASFLY--SLPH-RHPVNAACFSPDGARLLTTDQKS 318 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEE---------TTSBCCEEETTTCCSSSCCSB--CCBC-SSCEEECCBCTTSSEEEEEESSS
T ss_pred ceEEeeeecCCCceEEEEec---------CcceeeEEecccccccceEEE--eeec-cccccceeECCCCCeeEEEcCCC
Confidence 7899999999987 677777 889999999988765443321 2578 88999999999999999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE-----------c--CCeEEEEeCCCCeEEEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-----------A--ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-----------~--d~~i~iwd~~~~~~~~~ 644 (762)
.|++||+.++.....+. .+.........+....|+|++.+++++ + ++.|++||..+++++..
T Consensus 319 ~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 319 EIRVYSASQWDCPLGLI-----PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp CEEEEESSSSSSEEEEC-----CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred EEEEEECCCCccceEEe-----cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 99999998876554332 000000011122234455555554443 2 35799999999999888
Q ss_pred ec-cccCceeEE-EEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 645 IG-ETLTPIMNM-SFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 645 l~-~~~~~v~~~-~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
+. +|...|.++ +|+|||++|++++ |+. |+|||+++++..
T Consensus 394 l~~~~~~~v~s~~~fspdg~~lasg~-d~~--i~iW~~~~gk~r 434 (435)
T 4e54_B 394 LYDPESSGISSLNEFNPMGDTLASAM-GYH--ILIWSQQEARTR 434 (435)
T ss_dssp ECCSSCCCCCCEEEECTTSSCEEEEC-SSE--EEECCCC-----
T ss_pred EeCCCCCcEEEEEEECCCCCEEEEEc-CCc--EEEEECCcCeee
Confidence 64 677888887 6999999999886 655 999999998754
No 81
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.3e-36 Score=316.10 Aligned_cols=303 Identities=17% Similarity=0.163 Sum_probs=232.5
Q ss_pred eeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 275 KITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
.....|...|++++|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----------------------------~~~~~~gH~ 164 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----------------------------TFIKGIGAG 164 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----------------------------EEECCCSSS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----------------------------eEEEccCCC
Confidence 44557888999999999 5679999999999999998765321 234567899
Q ss_pred cceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccC---CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 354 SEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLP---RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 354 ~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
+.|++++|+| ++++|++++.|++|++||++++...... .+...+.+++|+|++++|++++.||.|++||++. +.+
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~ 243 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL 243 (435)
T ss_dssp CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee
Confidence 9999999998 6899999999999999999887654332 2334678899999999999999999999999874 455
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
..+.+|. ..|.+++|+|++. ++++++.|+.|++||+++.+....+.. . ..|...|.+++|+|
T Consensus 244 ~~~~~h~----------~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~-~------~~h~~~v~~~~~sp 306 (435)
T 4e54_B 244 WNLRMHK----------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY-S------LPHRHPVNAACFSP 306 (435)
T ss_dssp CCSBCCS----------SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB-C------CBCSSCEEECCBCT
T ss_pred EEEeccc----------ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE-e------eeccccccceeECC
Confidence 5666665 7899999999876 678899999999999988765443321 1 12367899999999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe------------CC
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS------------YG 576 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~------------~d 576 (762)
+|++|++++ .|+.|++||+.++.....+............+....|+|++.++++++ .+
T Consensus 307 dg~~l~s~~---------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 307 DGARLLTTD---------QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp TSSEEEEEE---------SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred CCCeeEEEc---------CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 999999999 899999999999887665532100000011233456777777776664 23
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEE-EEcCCCcEEEEEcCCeEEEEeCCCCeEE
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA-AFSADGSVLAVAAETVITLWDPDRNVLV 642 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~dg~~la~~~d~~i~iwd~~~~~~~ 642 (762)
+.|++||..+++....+ ...|...|.++ +|+|+|++||+|+|+.|+|||+++++..
T Consensus 378 ~~i~iwd~~~g~~~~~l----------~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 378 RTIDVFDGNSGKMMCQL----------YDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp CCEEEECSSSCCEEEEE----------CCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred CEEEEEECCCCcEEEEE----------eCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 57999999988766543 23577788887 6999999999999999999999998754
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=289.09 Aligned_cols=281 Identities=16% Similarity=0.205 Sum_probs=236.8
Q ss_pred ccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeec--CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 75 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE--GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 75 v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
..+ |+||+++ +||+|.|++|+|||+++|++++.+. +|...|++++|+|++ ++|++|+.|++|++||+.+
T Consensus 28 ~~~-l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-------~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 28 LNL-VDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-------NYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp CBC-EEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-------SEEEEEETTSEEEEEETTT
T ss_pred ceE-EEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-------CEEEEEECCCcEEEeecCC
Confidence 455 9999987 8999999999999999999888764 688889999999999 7899999999999999999
Q ss_pred cceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee
Q 040987 153 PELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL 232 (762)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 232 (762)
+++++.+..|.
T Consensus 99 ~~~~~~~~~h~--------------------------------------------------------------------- 109 (318)
T 4ggc_A 99 QKRLRNMTSHS--------------------------------------------------------------------- 109 (318)
T ss_dssp TEEEEEEECCS---------------------------------------------------------------------
T ss_pred ceeEEEecCcc---------------------------------------------------------------------
Confidence 99888776543
Q ss_pred ccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 233 AEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
..+. ++++++++++++ .++.+.+|+...... ......+|...+..+.+++++++|++++.||.|++||+.
T Consensus 110 ---~~~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 110 ---ARVG--SLSWNSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp ---SCEE--EEEEETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred ---ceEE--EeecCCCEEEEEecCCceEeeecCCCce----eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 2222 344556778754 689999999887653 335667899999999999999999999999999999997
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEE---EEEecCCeEEEEecCCCcee
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYL---YSGGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l---~s~~~dg~i~~wd~~~~~~~ 388 (762)
+++... ........|...|.++.++|++..+ ++++.+++|++||.......
T Consensus 181 ~~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 181 PGEGGW--------------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp CBTTBS--------------------------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred CCcccc--------------------------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 664321 2234556688899999999976543 35677899999999999888
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEe--cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISC--ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
....+...+..+.|++++..+++++ .|+.|++||+.+++++..+.+|. +.|.+++|+|++++|++++.
T Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~----------~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT----------SRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS----------SCEEEEEECTTSSCEEEEET
T ss_pred ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC----------CCEEEEEEcCCCCEEEEEec
Confidence 7778888999999999999888765 68999999999999999999987 78999999999999999999
Q ss_pred CceEEEEEcCCC
Q 040987 467 NYCIHFYSLLDD 478 (762)
Q Consensus 467 dg~i~i~d~~~~ 478 (762)
||+|++||+.+.
T Consensus 305 D~~v~iWd~~~~ 316 (318)
T 4ggc_A 305 DETLRLWRCFEL 316 (318)
T ss_dssp TTEEEEECCSCC
T ss_pred CCeEEEEECCCC
Confidence 999999999754
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=290.33 Aligned_cols=291 Identities=13% Similarity=0.174 Sum_probs=242.2
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
+....+.+|.+.|.+++| +++++|++++.||.|++||+.+++.. ....+...+.+++|+|+++++++++.|+.+++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 456789999999999999 99999999999999999999888764 4566788999999999999999999999999999
Q ss_pred cCCc---eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 423 MPSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 423 ~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
+... +....+.+|. ..+.+++| +++++++++.|+.|++|| .++....+.. | ..
T Consensus 88 ~~~~~~~~~~~~~~~~~----------~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~----~------~~ 143 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQ----------GNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA----H------NA 143 (313)
T ss_dssp TTCCTTSCC-CEECCCS----------SCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC----C------SS
T ss_pred eeecCCCCcccchhhcc----------cCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc----C------CC
Confidence 8763 5566666666 78899998 577999999999999999 3333333322 2 67
Q ss_pred eEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC-CCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 500 VVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP-HRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 500 ~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
.+.+++|.| +++++++++ .++.|++||. .+....+ .. | ...+.+++|+|++. +++++.|+
T Consensus 144 ~v~~~~~~~~~~~~l~~~~---------~d~~i~i~d~--~~~~~~~-----~~~~-~~~i~~~~~~~~~~-~~~~~~dg 205 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTAS---------ADKTIKLWQN--DKVIKTF-----SGIH-NDVVRHLAVVDDGH-FISCSNDG 205 (313)
T ss_dssp CEEEEEEEETTTTEEEEEE---------TTSCEEEEET--TEEEEEE-----CSSC-SSCEEEEEEEETTE-EEEEETTS
T ss_pred ceeEEEEccCCCCEEEEEE---------CCCCEEEEec--CceEEEE-----eccC-cccEEEEEEcCCCe-EEEccCCC
Confidence 799999998 999999998 8899999992 2222222 34 6 88999999999998 89999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMS 656 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 656 (762)
.|++||+.+++....+ ..|...|++++|+|+++ |++++ |+.|++||+.+++++..+..|..+|.+++
T Consensus 206 ~i~i~d~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~ 273 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTY-----------EGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD 273 (313)
T ss_dssp EEEEEETTTCCEEEEE-----------ECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEE
T ss_pred eEEEEECCchhhhhhh-----------hcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEE
Confidence 9999999987765544 36789999999999995 66666 99999999999999999999999999999
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
|+|+++ +++++.|+. |++||+.+++........
T Consensus 274 ~~~~~~-~~~~~~dg~--i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 274 CMSNGD-IIVGSSDNL--VRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp ECTTSC-EEEEETTSC--EEEEESCGGGCCC-----
T ss_pred EccCCC-EEEEeCCCc--EEEEeCCCCceeehhhhh
Confidence 999998 667999998 999999998877655443
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=311.86 Aligned_cols=315 Identities=11% Similarity=0.059 Sum_probs=246.4
Q ss_pred cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 111 EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 111 ~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
+.-...|.+|+|+||| .++||++.|++|+ |...+++
T Consensus 12 ~~~~~~v~sv~~SpDG-------~~iASas~D~TV~--d~~~~~~----------------------------------- 47 (588)
T 2j04_A 12 KEFEDWKNNLTWARDG-------TLYLTTFPDISIG--QPKYAKD----------------------------------- 47 (588)
T ss_dssp CCCSSSSCCEEECTTS-------CEEEECSSSEEEE--EECCCSC-----------------------------------
T ss_pred hHhhccEEEEEECCCC-------CEEEEEcCCceee--cccccce-----------------------------------
Confidence 3456889999999999 7899999999999 6333221
Q ss_pred EEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhh
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAER 270 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~ 270 (762)
..+|...|.+++|+|+| .++.+.+|+.....
T Consensus 48 ----------------------------------------l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~--- 78 (588)
T 2j04_A 48 ----------------------------------------INCNSKNLFHVKEFPLE------FENKLDFELAQQNG--- 78 (588)
T ss_dssp ----------------------------------------CSSBGGGTEEEEEECCC------CCCTTTTSCCCSSC---
T ss_pred ----------------------------------------ecCCCccEEEEEECCCC------CcceEEEEeCCCce---
Confidence 13578889999999999 44544455433222
Q ss_pred heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 271 VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
.....|...|.+++|||||++||+++.||.|++|+..+ ++..+.
T Consensus 79 ----~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--------------------------------~l~~l~ 122 (588)
T 2j04_A 79 ----LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--------------------------------MLTNLD 122 (588)
T ss_dssp ----SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--------------------------------EEEECC
T ss_pred ----EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--------------------------------eeeecc
Confidence 12225688999999999999999999999999999533 123444
Q ss_pred cccc-----ceeEEEEecCCCEEEEEecCCeEEEEecCCCce--------ecc----CCCCCCeEEEEeCCCCCeEEEEe
Q 040987 351 WHPS-----EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--------KFL----PRIGSPLLYFTESPDPSLSSISC 413 (762)
Q Consensus 351 ~h~~-----~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--------~~~----~~~~~~v~~~~~s~~~~~l~~~~ 413 (762)
|.. .|.+++|||||++|++|+.||+|++||+.++.. ..+ .+|...|.+++|+||| +++++
T Consensus 123 -~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass 199 (588)
T 2j04_A 123 -SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL 199 (588)
T ss_dssp -CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE
T ss_pred -CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe
Confidence 554 599999999999999999999999999998852 222 5577899999999999 78888
Q ss_pred cCCcEEEEEcCCceE---EEEEc-cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecc
Q 040987 414 ADNQVHLLKMPSMEI---IRSIS-GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 414 ~d~~i~i~d~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 489 (762)
.|+.+++||+.++.. .+++. +|. ..|.+++|+ ++.||+++ ++.|++||+.+++.... ..
T Consensus 200 ~D~tVrlWd~~~~~~~~~~~tL~~~h~----------~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~----~~ 262 (588)
T 2j04_A 200 SNNSVFSMTVSASSHQPVSRMIQNASR----------RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL----KT 262 (588)
T ss_dssp TTCCEEEECCCSSSSCCCEEEEECCCS----------SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE----EC
T ss_pred CCCeEEEEECCCCccccceeeeccccc----------CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE----Ec
Confidence 999999999988763 34553 554 688999999 58888887 69999999987654211 11
Q ss_pred cccCCCCcceeEEEEEE--ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 490 NHQPGDDVTVVVTLVAL--SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~--sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
+| ...+..++| +||+..+++++ .+|+ ++|..+ .++++||+
T Consensus 263 gh------~~~V~~va~~~s~d~~~La~a~---------edG~-klw~~d----------------------~~~~spd~ 304 (588)
T 2j04_A 263 GS------LENFHIIPLNHEKESTILLMSN---------KTSY-KVLLED----------------------ELHVTADN 304 (588)
T ss_dssp SC------CSCCCEEEETTCSSCEEEEECS---------SCEE-EEEESS----------------------SEEEECCC
T ss_pred CC------CceEEEEEeeeCCCCCEEEEEc---------CCCC-EEEeec----------------------cEEECCCc
Confidence 23 677999999 99999999998 8899 999876 14589999
Q ss_pred CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 568 RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 568 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
..+++. |+++++|+...+... .++ +...|.+++|||||+.+|+++
T Consensus 305 ~l~a~~--d~~v~lW~~~g~~l~-~~~------------~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 305 IIAPYL--EKKFKKWSTIWNEFN-NYE------------TTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SSHHHH--HHHHHHTTTTTTSSS-SSC------------CEEEEEEEEECTTSSEEEEEE
T ss_pred eEEEEc--CCEEEEEECCCCcee-eec------------cceEEEEEEECCCCCEEEEEE
Confidence 888875 899999998655422 321 356799999999999999886
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-34 Score=290.05 Aligned_cols=253 Identities=18% Similarity=0.245 Sum_probs=208.9
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEccc--ceEEeeecCCccceeEEEEeCC--CCcccceeeeEEeee
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--GLQISSLEGHKAPVTTVIVVPA--STPATKILSYCWTAS 140 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~--~~~~~~l~~h~~~V~~v~~s~~--~~~~~~l~~~l~s~s 140 (762)
..+.+|.+.|.+ ++|+|||++||+++ |++|+|||+++ ++++.++.+|.+.|++++|+++ + .+|+|++
T Consensus 3 ~~~~~h~~~V~~-~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-------~~l~s~s 74 (297)
T 2pm7_B 3 VIANAHNEMIHD-AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-------TILASCS 74 (297)
T ss_dssp EECCSCSSCEEE-EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-------SEEEEEE
T ss_pred eeccCCcCceEE-EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-------CEEEEEc
Confidence 356899999997 99999999999999 79999999974 4788999999999999999874 6 6889999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.|++|++||+.+++....
T Consensus 75 ~D~~v~iWd~~~~~~~~~-------------------------------------------------------------- 92 (297)
T 2pm7_B 75 YDGKVMIWKEENGRWSQI-------------------------------------------------------------- 92 (297)
T ss_dssp TTTEEEEEEBSSSCBCCC--------------------------------------------------------------
T ss_pred CCCEEEEEEcCCCceEEE--------------------------------------------------------------
Confidence 999999999987642110
Q ss_pred cCCccccceeeeccCCCceEEEECCC--CCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-----
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSS--GKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT----- 292 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----- 292 (762)
.....|...|.+++|+|+ |++|++ +.|+.|++||+.++... ......+|...|.+++|+|+
T Consensus 93 --------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 93 --------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp --------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB---CCEEEECCSSCEEEEEECCCC----
T ss_pred --------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce---eeeeeecccCccceEeecCCccccc
Confidence 122346778999999998 888874 57999999999876421 12456789999999999997
Q ss_pred --------CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC
Q 040987 293 --------QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD 364 (762)
Q Consensus 293 --------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 364 (762)
+++|++|+.|+.|++||+.+++... .....+.+|...|.+++|+|+
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~--------------------------~~~~~l~~H~~~V~~v~~sp~ 215 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------VLESTLEGHSDWVRDVAWSPT 215 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEE--------------------------EEEEEECCCSSCEEEEEECCC
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE--------------------------EEEEEecCCCCceEEEEECCC
Confidence 5799999999999999987653110 134578899999999999998
Q ss_pred C---CEEEEEecCCeEEEEecCCCce----ecc--CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 365 G---AYLYSGGKEGVLVVWQLDTGKK----KFL--PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 365 g---~~l~s~~~dg~i~~wd~~~~~~----~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+ ++|++++.|++|++||+++... ..+ ..+...+.+++|+|++++|++++.|+.|++|+...
T Consensus 216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 4 8999999999999999987531 122 45678899999999999999999999999999863
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-34 Score=287.38 Aligned_cols=297 Identities=15% Similarity=0.158 Sum_probs=246.4
Q ss_pred Ecccc-eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCc
Q 040987 100 STSTG-LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPA 178 (762)
Q Consensus 100 d~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (762)
|..++ ++++++.+|.+.|++++| |++ .+|++++.||.|++||+.+++....+.
T Consensus 3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~-------~~l~s~~~dg~v~vw~~~~~~~~~~~~------------------ 56 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQDVRDVVA-VDD-------SKVASVSRDGTVRLWSKDDQWLGTVVY------------------ 56 (313)
T ss_dssp --CCCCEEEEEECCCSSCEEEEEE-EET-------TEEEEEETTSEEEEEEESSSEEEEEEE------------------
T ss_pred CccccHHHHHHhhCCCCCcEEEEe-cCC-------CEEEEEEcCCcEEEEECCCCEEEEEee------------------
Confidence 33344 788899999999999999 888 688999999999999998876655433
Q ss_pred ccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCe
Q 040987 179 QSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRK 257 (762)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~ 257 (762)
.|...|.+++|+|++++|++ +.++.
T Consensus 57 ------------------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 57 ------------------------------------------------------TGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp ------------------------------------------------------ECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ------------------------------------------------------cCCccEEEEEECCCCCEEEEecCCCe
Confidence 34667889999999999985 57999
Q ss_pred EEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCc
Q 040987 258 LLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGV 337 (762)
Q Consensus 258 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (762)
+++|++...... ........|...|.+++| ++++|++++.||.|++||. .
T Consensus 83 i~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~------------------------ 132 (313)
T 3odt_A 83 INGVPLFATSGE--DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--G------------------------ 132 (313)
T ss_dssp EEEEETTCCTTS--CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--T------------------------
T ss_pred EEEEEeeecCCC--CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--C------------------------
Confidence 999999876533 233556789999999999 5779999999999999992 2
Q ss_pred ccCCccccceeeeccccceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 338 RDNDDADLCTTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
.....+..|...+.++.|.| +++++++++.|+.|++||...........+...+.+++|+|++. +++++.++
T Consensus 133 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg 205 (313)
T 3odt_A 133 ------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG 205 (313)
T ss_dssp ------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTS
T ss_pred ------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCC
Confidence 23467778999999999998 89999999999999999954433334444888999999999998 88999999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.|++||+.+++.+..+.+|. ..+.+++|+|++ .+++++.||.|++||+.+++....+...
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------- 265 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHE----------SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--------- 265 (313)
T ss_dssp EEEEEETTTCCEEEEEECCS----------SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS---------
T ss_pred eEEEEECCchhhhhhhhcCC----------ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc---------
Confidence 99999999999999998877 789999999999 6899999999999999998876665432
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
...+.+++|+|++++ ++++ .|+.|++||+.+++....
T Consensus 266 -~~~i~~~~~~~~~~~-~~~~---------~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 266 -AISIWSVDCMSNGDI-IVGS---------SDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp -SSCEEEEEECTTSCE-EEEE---------TTSCEEEEESCGGGCCC-
T ss_pred -CceEEEEEEccCCCE-EEEe---------CCCcEEEEeCCCCceeeh
Confidence 557999999999985 4566 889999999998766543
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-35 Score=305.97 Aligned_cols=339 Identities=9% Similarity=0.069 Sum_probs=230.3
Q ss_pred eeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 276 ITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 276 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
....+.+.|.+++|+|++++|++++.|+.|++||+.++.. +....+.+|...
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------~~~~~~~~h~~~ 57 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------KHARTFSDHDKI 57 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------------EECCCBCCCSSC
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------------EEEEEEecCCce
Confidence 3445677999999999999999999999999999976521 234677889999
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCc----eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce---E
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK----KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME---I 428 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~---~ 428 (762)
|.+++|+|++++|++++.|+.|++||+.+++ ...+..|...|.+++|+|++++|++++.|+.|++||+++++ .
T Consensus 58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 9999999999999999999999999999887 34567788999999999999999999999999999999876 3
Q ss_pred EEEEcc-CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce--------------eeEEeecccccC
Q 040987 429 IRSISG-IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI--------------SEVQVCERNHQP 493 (762)
Q Consensus 429 ~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~~~~~~ 493 (762)
...+.. |. ..|.+++|+|++++|++++.|+.|++||+...... .......
T Consensus 138 ~~~~~~~h~----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 202 (377)
T 3dwl_C 138 SKHLKRPLR----------STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----- 202 (377)
T ss_dssp CEEECSSCC----------SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-----
T ss_pred eeEeecccC----------CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-----
Confidence 566665 55 78999999999999999999999999999643311 1111111
Q ss_pred CCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 494 GDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 494 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
.|...|.+++|+|++++|++++ .|+.|++||+.+++...... ..+.+| ...|.+++|+|++++|+++
T Consensus 203 --~~~~~v~~~~~sp~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 203 --PSGGWVHAVGFSPSGNALAYAG---------HDSSVTIAYPSAPEQPPRAL-ITVKLS-QLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp --CCSSSEEEEEECTTSSCEEEEE---------TTTEEC-CEECSTTSCEEEC-CCEECS-SSCEEEEEEEETTEEEEEE
T ss_pred --cCCceEEEEEECCCCCEEEEEe---------CCCcEEEEECCCCCCcceee-EeecCC-CCceEEEEEcCCCCEEEEE
Confidence 2377899999999999999999 89999999999988722110 112578 8899999999999999998
Q ss_pred eCCCcEEEEEcccccccc--cccCCceeee----eecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec
Q 040987 574 SYGGDFKVWICNDELQQK--DLQSSGWSCH----AVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~--~~~~~~~~~~----~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~ 646 (762)
+.++.+ +|+........ .+....-... ............+.|++....+.... .+... .......
T Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~ 341 (377)
T 3dwl_C 270 YNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPT 341 (377)
T ss_dssp SSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSS
T ss_pred cCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCc
Confidence 866655 77765332111 1100000000 00000011244444544433332221 22211 1222334
Q ss_pred cccCceeEEEEeCCC-C---EEEEEEcCCCCeEEEEEC
Q 040987 647 ETLTPIMNMSFVGSS-E---YLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg-~---~l~s~~~d~~~~v~vwd~ 680 (762)
.|.+.|.++++.++. . .|+|++.||. |++||+
T Consensus 342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~--i~iWdl 377 (377)
T 3dwl_C 342 VHQNMIATLRPYAGTPGNITAFTSSGTDGR--VVLWTL 377 (377)
T ss_dssp SCSSCEEEEEEEEEETTEEEEEEEEETTSE--EEEECC
T ss_pred cccceeEEEeccCCCCCceEEEEeecCCCc--EEEecC
Confidence 699999999976643 3 6999999998 999986
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-35 Score=307.93 Aligned_cols=315 Identities=14% Similarity=0.128 Sum_probs=228.4
Q ss_pred eecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc--eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCe
Q 040987 68 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGT 144 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~ 144 (762)
...|.+.|.+ ++|+|||++||+++ |+.|+|||+.++ +++.++.+|...|++++|+|++ .+|++++.|++
T Consensus 7 ~~~~~~~v~~-~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------~~l~s~s~d~~ 78 (377)
T 3dwl_C 7 LHILPKPSYE-HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------NRIVTCSQDRN 78 (377)
T ss_dssp EEECSSCCSC-CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------CCEEEEETTSS
T ss_pred EecCCCcEEE-EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------CEEEEEeCCCe
Confidence 4556788997 99999999999997 799999999998 7889999999999999999999 68899999999
Q ss_pred EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 145 IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
|++||+.+++.....
T Consensus 79 v~vwd~~~~~~~~~~----------------------------------------------------------------- 93 (377)
T 3dwl_C 79 AYVYEKRPDGTWKQT----------------------------------------------------------------- 93 (377)
T ss_dssp EEEC------CCCCE-----------------------------------------------------------------
T ss_pred EEEEEcCCCCceeee-----------------------------------------------------------------
Confidence 999999876510000
Q ss_pred cccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeec-cCcCeEEEEEcCCCcEEEEeecC
Q 040987 225 RLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLH-HTKKLTVLAFHPTQRIVAAGDVT 302 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 302 (762)
.....|...|.+++|+|++++|+++ .|+.|++||+.+++.. .....+.. |...|.+++|+|++++|++++.|
T Consensus 94 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 94 ----LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW--WVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp ----EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C--CCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred ----eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc--eeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 1234577889999999999998854 7899999999987631 12244455 99999999999999999999999
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQL 382 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~ 382 (762)
|.|++||+............ ..-......+++..+ +|...|.+++|+|++++|++++.|+.|++||+
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEAS------------VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSC------------SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred CEEEEEEEEecccCCCcccc------------ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99999998644311100000 000000123445566 89999999999999999999999999999999
Q ss_pred CCCce-----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce--EEEEEc----------------------
Q 040987 383 DTGKK-----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME--IIRSIS---------------------- 433 (762)
Q Consensus 383 ~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~---------------------- 433 (762)
.+++. ..+..|...+.+++|+|++++|++++.++.+ +|+..... ....+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEG 313 (377)
T ss_dssp CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--
T ss_pred CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccc
Confidence 99875 3466788899999999999999988655555 77665211 000010
Q ss_pred ------------cCC------CCCCCCCcccCceeeEEEeCCC-C---EEEEeecCceEEEEEc
Q 040987 434 ------------GIK------LPCPLPEEYKGLCRDIAFNHDG-G---LVALRAENYCIHFYSL 475 (762)
Q Consensus 434 ------------~~~------~~~~~~~~~~~~v~~~~~s~~~-~---~l~~~~~dg~i~i~d~ 475 (762)
... ........|.+.|.++++.++. . .+++++.||.|++||+
T Consensus 314 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 314 PVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 0111223477899999976643 3 6999999999999985
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-34 Score=300.00 Aligned_cols=308 Identities=11% Similarity=0.103 Sum_probs=239.3
Q ss_pred eeeccCCCceEEEECCC---CC--EEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC----CcEEEEee
Q 040987 230 VTLAEMKEPQVITISSS---GK--YFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT----QRIVAAGD 300 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spd---g~--~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~ 300 (762)
...+|...|.+++|+|+ +. +++++.++.|++|++.+++............|...|.+++|+|+ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 45579999999999984 33 55677889999999998775411111111236788999999999 77999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec-CCCEEEEEecCCeEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVV 379 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~ 379 (762)
.||.|++||+.+++ .+..+.+|...|.+++|+| ++++|++++.|+.|++
T Consensus 93 ~dg~i~v~d~~~~~------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i 142 (366)
T 3k26_A 93 SRGIIRIINPITMQ------------------------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 142 (366)
T ss_dssp TTCEEEEECTTTCC------------------------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCCEEEEEEchhce------------------------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 99999999987664 3467788999999999999 9999999999999999
Q ss_pred EecCCCceecc----CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC------------------CC
Q 040987 380 WQLDTGKKKFL----PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI------------------KL 437 (762)
Q Consensus 380 wd~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------~~ 437 (762)
||+.+++.... ..+...|.+++|+|++++|++++.|+.|++||+.+++....+... ..
T Consensus 143 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp EETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred EEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 99999887543 578889999999999999999999999999999986554333220 00
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee----------eEEeecccccCCCCcceeEEEEEEe
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS----------EVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.......|...|.+++|+ ++++++++.|+.|++||+.+..... ........| ...+.+++|+
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s 294 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS------QCDIWYMRFS 294 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS------SCCSSCCCCE
T ss_pred ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc------CCcEEEEEEc
Confidence 000011144789999999 6799999999999999998765411 111111122 5668899999
Q ss_pred cC--CCeEEEEeeeccccCCCceeEEEEEEecCCCceeE-EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 508 QD--GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT-LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 508 p~--g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
|+ +++|++++ .|+.|++||+.+++.... ........| ...|++++|+|++++|++++.||.|++||+
T Consensus 295 ~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 295 MDFWQKMLALGN---------QVGKLYVWDLEVEDPHKAKCTTLTHHKC-GAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECTTSSEEEEEC---------TTSCEEEEECCSSSGGGCEEEEECCTTC-CSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCCCCcEEEEEe---------cCCcEEEEECCCCCCccccceEEccccc-CCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 99 99999998 889999999998875442 222212223 589999999999999999999999999998
Q ss_pred c
Q 040987 585 N 585 (762)
Q Consensus 585 ~ 585 (762)
.
T Consensus 365 ~ 365 (366)
T 3k26_A 365 L 365 (366)
T ss_dssp -
T ss_pred c
Confidence 5
No 90
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-34 Score=296.87 Aligned_cols=291 Identities=14% Similarity=0.159 Sum_probs=235.4
Q ss_pred eecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecC-CccceeEEEEeCCCCcccceeeeEEeeecCCeE
Q 040987 68 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG-HKAPVTTVIVVPASTPATKILSYCWTASLDGTI 145 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i 145 (762)
..+|...+.+ .+++++++.+++++ ++.|+|||+++++....+.. |...|++++|+|++ .+|++++.||.|
T Consensus 87 ~~~~~~~~~~-~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-------~~l~~~~~dg~i 158 (401)
T 4aez_A 87 APGIIDDYYL-NLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-------SFLSVGLGNGLV 158 (401)
T ss_dssp CTTCCCCTTC-BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-------SEEEEEETTSCE
T ss_pred CCCCcCCceE-EEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-------CEEEEECCCCeE
Confidence 3577766554 55555555555555 89999999999998888776 89999999999999 688999999999
Q ss_pred EEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 146 KYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
++||+.+++.+..+.
T Consensus 159 ~iwd~~~~~~~~~~~----------------------------------------------------------------- 173 (401)
T 4aez_A 159 DIYDVESQTKLRTMA----------------------------------------------------------------- 173 (401)
T ss_dssp EEEETTTCCEEEEEC-----------------------------------------------------------------
T ss_pred EEEECcCCeEEEEec-----------------------------------------------------------------
Confidence 999999888766543
Q ss_pred ccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
.|...|.+++| ++++|+ ++.++.|++||+..... ......+|...|.+++|+|++++|++++.||.
T Consensus 174 -------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 174 -------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH----QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp -------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred -------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc----eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 34566777788 456777 45799999999985442 23566789999999999999999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEEEEe--cCCeEEEEe
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLYSGG--KEGVLVVWQ 381 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~--~dg~i~~wd 381 (762)
|++||+.+++ +...+..|...|.+++|+|++. .+++++ .|+.|++||
T Consensus 241 v~iwd~~~~~------------------------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 241 VQIWDARSSI------------------------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp EEEEETTCSS------------------------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred EEEccCCCCC------------------------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 9999997653 3456778999999999999764 555654 699999999
Q ss_pred cCCCceeccCCCCCCeEEEEeCCCCCeEEEEe--cCCcEEEEEcCCceEEEE--EccCCCCCCCCCcccCceeeEEEeCC
Q 040987 382 LDTGKKKFLPRIGSPLLYFTESPDPSLSSISC--ADNQVHLLKMPSMEIIRS--ISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 382 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+.+++......+...+.+++|+|+++.+++++ .++.|++|++.+++.... +.+|. ..|.+++|+|+
T Consensus 291 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~----------~~v~~~~~s~d 360 (401)
T 4aez_A 291 AATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD----------TRVLYSALSPD 360 (401)
T ss_dssp TTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCS----------SCCCEEEECTT
T ss_pred CCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCC----------CCEEEEEECCC
Confidence 99999877667788999999999999999954 899999999998665544 55665 78899999999
Q ss_pred CCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 458 GGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
+++|++++.||.|++|++.+++.+...
T Consensus 361 g~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp SSEEEEECTTSEEEEEECCC-------
T ss_pred CCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999999999999999999988766543
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-34 Score=298.13 Aligned_cols=288 Identities=16% Similarity=0.218 Sum_probs=234.8
Q ss_pred eccccce--eEEEEecCCCEEEEEecCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 350 HWHPSEV--SVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 350 ~~h~~~v--~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
.+|...+ .++.|+ +..+++++.|+.|++||+.+++.... ..+...|.+++|+|++++|++++.+|.|++||+.+
T Consensus 88 ~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 88 PGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp TTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 3565554 445555 45688888999999999999987543 33678999999999999999999999999999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
++.+..+.+|. ..|.+++|+ ++++++++.||.|++||+..... ...+. .| ...|.++
T Consensus 166 ~~~~~~~~~~~----------~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~------~~~v~~~ 223 (401)
T 4aez_A 166 QTKLRTMAGHQ----------ARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ----GH------SSEVCGL 223 (401)
T ss_dssp CCEEEEECCCS----------SCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE----CC------SSCEEEE
T ss_pred CeEEEEecCCC----------CceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc----CC------CCCeeEE
Confidence 99999998877 788999994 57999999999999999985433 33222 22 6789999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEe--CCCcEEE
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSS--YGGDFKV 581 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~--~dg~i~i 581 (762)
+|+|++++|++++ .|+.|++||+.+++....+ .+| ...|.+++|+|++. ++++++ .|+.|++
T Consensus 224 ~~~~~~~~l~s~~---------~d~~v~iwd~~~~~~~~~~-----~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 224 AWRSDGLQLASGG---------NDNVVQIWDARSSIPKFTK-----TNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EECTTSSEEEEEE---------TTSCEEEEETTCSSEEEEE-----CCC-SSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred EEcCCCCEEEEEe---------CCCeEEEccCCCCCccEEe-----cCC-cceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 9999999999999 8899999999987766554 567 88999999999775 455554 6999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE--Ec-CCeEEEEeCCCCeEEE--EeccccCceeEEE
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV--AA-ETVITLWDPDRNVLVA--VIGETLTPIMNMS 656 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~--~~-d~~i~iwd~~~~~~~~--~l~~~~~~v~~~~ 656 (762)
||+.+++....+. +...|.+++|+|+++++++ |+ |+.|++||+.+++... .+.+|...|.+++
T Consensus 289 ~d~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~ 356 (401)
T 4aez_A 289 WNAATGARVNTVD------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA 356 (401)
T ss_dssp EETTTCCEEEEEE------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE
T ss_pred EECCCCCEEEEEe------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE
Confidence 9999887665542 5678999999999999998 54 9999999999975544 4678999999999
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEE
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
|+|||++|++++.||. |++||+.+++.+....
T Consensus 357 ~s~dg~~l~s~~~dg~--i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 357 LSPDGRILSTAASDEN--LKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ECTTSSEEEEECTTSE--EEEEECCC--------
T ss_pred ECCCCCEEEEEeCCCc--EEEEECCCCccccccc
Confidence 9999999999999998 9999999988776543
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1e-34 Score=292.81 Aligned_cols=253 Identities=17% Similarity=0.241 Sum_probs=203.7
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccce--EEeeecCCccceeEEEEeCC--CCcccceeeeEEeee
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHKAPVTTVIVVPA--STPATKILSYCWTAS 140 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~--~~~~l~~h~~~V~~v~~s~~--~~~~~~l~~~l~s~s 140 (762)
..+.+|.+.|.+ ++|+|||++||+++ |++|+|||+++++ ++.++.+|.+.|.+++|+|+ + .+|+|++
T Consensus 7 ~~~~~H~~~V~~-v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-------~~l~s~s 78 (316)
T 3bg1_A 7 TVDTSHEDMIHD-AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-------NILASCS 78 (316)
T ss_dssp -------CCEEE-EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-------SCEEEEE
T ss_pred eecccccCeEEE-eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-------CEEEEEE
Confidence 456899999998 99999999999999 7999999998875 57889999999999999864 6 6889999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.|++|++||+.+++....
T Consensus 79 ~D~~v~iWd~~~~~~~~~-------------------------------------------------------------- 96 (316)
T 3bg1_A 79 YDRKVIIWREENGTWEKS-------------------------------------------------------------- 96 (316)
T ss_dssp TTSCEEEECCSSSCCCEE--------------------------------------------------------------
T ss_pred CCCEEEEEECCCCcceEE--------------------------------------------------------------
Confidence 999999999987642111
Q ss_pred cCCccccceeeeccCCCceEEEECCC--CCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-----
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSS--GKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT----- 292 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----- 292 (762)
....+|...|.+++|+|+ +.+|+++ .|+.|++||+..+... .......+|...|.+++|+|+
T Consensus 97 --------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 97 --------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--EVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp --------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--EECCBTTSSSSCBCCCEECCCCCC--
T ss_pred --------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--ceeeeeccccCCcceEEEccccCCcc
Confidence 123357788999999998 7788855 7999999999876421 122455689999999999997
Q ss_pred ------------CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 293 ------------QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 293 ------------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
+++|++|+.|+.|++||+...... .+...+.+|...|.+++
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~---------------------------~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW---------------------------KEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE---------------------------EEEECCBCCSSCEEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCcc---------------------------ceeeecccCCCceEEEE
Confidence 468999999999999998644211 13457789999999999
Q ss_pred EecCC----CEEEEEecCCeEEEEecCCCc-----eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 361 FSSDG----AYLYSGGKEGVLVVWQLDTGK-----KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 361 ~s~~g----~~l~s~~~dg~i~~wd~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
|+|++ ++|++++.|++|++|++++.. ...+..+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99986 899999999999999998632 123445778999999999999999999999999999763
No 93
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.4e-33 Score=278.22 Aligned_cols=257 Identities=13% Similarity=0.127 Sum_probs=211.0
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.|.+++|+|+|++||+|+.|+.|++|++.+.. .+++..+.+|.+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------------------~~~~~~l~gH~~ 54 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------------------HKLIDTLTGHEG 54 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC----------------------------BCCCEEECCCSS
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC----------------------------cEEEEEEccccC
Confidence 3566899999999999999999999999999999986431 124578899999
Q ss_pred ceeEEEEec--CCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSS--DGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~--~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
.|.+++|++ ++++|++++.|++|++||+++++. ..+..|...|.+++|+|+ +.+|++++.|+.|++||++++.
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 999999986 489999999999999999998753 235568889999999998 8999999999999999998753
Q ss_pred E--EEEEccCCCCCCCCCcccCceeeEEEeCC-------------CCEEEEeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 428 I--IRSISGIKLPCPLPEEYKGLCRDIAFNHD-------------GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 428 ~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
. ...+.+|. ..|.+++|+|+ +++|++++.|+.|++||+.++...........+|
T Consensus 135 ~~~~~~~~~h~----------~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H- 203 (297)
T 2pm7_B 135 TTSPIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH- 203 (297)
T ss_dssp CBCCEEEECCS----------SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-
T ss_pred ceeeeeeeccc----------CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-
Confidence 2 34556665 78999999997 5799999999999999998776443333333444
Q ss_pred CCCCcceeEEEEEEecCC---CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 493 PGDDVTVVVTLVALSQDG---SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
...|.+++|+|++ ++|++++ .|++|++||+.+..............| ...|.+++|+|++++
T Consensus 204 -----~~~V~~v~~sp~~~~~~~las~s---------~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ 268 (297)
T 2pm7_B 204 -----SDWVRDVAWSPTVLLRSYMASVS---------QDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNV 268 (297)
T ss_dssp -----SSCEEEEEECCCCSSSEEEEEEE---------TTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCC
T ss_pred -----CCceEEEEECCCCCCceEEEEEE---------CCCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCE
Confidence 7789999999995 8999999 899999999987543222111112456 789999999999999
Q ss_pred EEEEeCCCcEEEEEcc
Q 040987 570 AVSSSYGGDFKVWICN 585 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~ 585 (762)
||+++.|+.|++|+..
T Consensus 269 las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 269 LALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEETTSCEEEEEEC
T ss_pred EEEEcCCCcEEEEEEC
Confidence 9999999999999986
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=299.42 Aligned_cols=337 Identities=13% Similarity=0.118 Sum_probs=236.3
Q ss_pred ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccce-----------EEeeecCCc------------cceeEEEEeC
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-----------QISSLEGHK------------APVTTVIVVP 124 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-----------~~~~l~~h~------------~~V~~v~~s~ 124 (762)
..|.+.|.+ ++|+|||++||+|+ ||.|+|||+.+++ ++..+.+|. ..|++++|+|
T Consensus 25 ~~~~~~V~~-v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIIST-VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEE-EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEE-EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 567889997 99999999999999 7999999999887 588999998 8899999999
Q ss_pred CCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccc-eEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCC
Q 040987 125 ASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFS-IFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSH 203 (762)
Q Consensus 125 ~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (762)
+++. .+|++++.|++|++||+.+++.......... .-.+.. .........+ .+.+
T Consensus 104 ~~~~-----~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~---~~~~----------- 159 (447)
T 3dw8_B 104 QKNA-----AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRD-----PTTVTTLRVP---VFRP----------- 159 (447)
T ss_dssp CCSS-----SEEEEEECSSCEEEEEEEEEEEEEECCSCC-------------CCCCCSCCCC---EEEE-----------
T ss_pred CCCc-----ceEEEeCCCCeEEEEecccccCCcceecccCccccccC-----cccccceEec---cccc-----------
Confidence 9720 2677999999999999987664322100000 000000 0000000000 0000
Q ss_pred ccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeee------ee
Q 040987 204 KKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRK------IT 277 (762)
Q Consensus 204 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~------~~ 277 (762)
.. |.. ..........+|...|.+++|+|++++|+++.|+.|++||+...... ... ..
T Consensus 160 ----------~~---~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~---~~~~~~~~~~~ 222 (447)
T 3dw8_B 160 ----------MD---LMV-EASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRS---FNIVDIKPANM 222 (447)
T ss_dssp ----------EE---EEE-EEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEE---EEEEECCCSSG
T ss_pred ----------hh---eee-eccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCce---eeeeecccccc
Confidence 00 000 01111123467999999999999999999889999999999854321 111 24
Q ss_pred eccCcCeEEEEEcCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec-----
Q 040987 278 LHHTKKLTVLAFHPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW----- 351 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 351 (762)
.+|...|.+++|+|++ ++|++|+.||.|++||+.+++... .....+.+
T Consensus 223 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------~~~~~~~~~~~~~ 276 (447)
T 3dw8_B 223 EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD--------------------------RHSKLFEEPEDPS 276 (447)
T ss_dssp GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC--------------------------TTCEEECCC----
T ss_pred cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc--------------------------ceeeEeccCCCcc
Confidence 5899999999999998 999999999999999997765311 01233344
Q ss_pred -------cccceeEEEEecCCCEEEEEecCCeEEEEecCC-Cceec-cCCCCC---------------CeEEEEeCCCCC
Q 040987 352 -------HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT-GKKKF-LPRIGS---------------PLLYFTESPDPS 407 (762)
Q Consensus 352 -------h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~-~~~~~-~~~~~~---------------~v~~~~~s~~~~ 407 (762)
|...|.+++|+|+|++|++++. +.|++||+.+ ++... +..|.. .+..++|+|+++
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~ 355 (447)
T 3dw8_B 277 NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS 355 (447)
T ss_dssp -CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS
T ss_pred ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCC
Confidence 4459999999999999999998 9999999987 55532 223321 133499999999
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC-----------------------CCcccCceeeEEEeCCCCEEEEe
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL-----------------------PEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
+|++++.|+.|++||+.+++.+ .+..+..+... ...+...+..++|+|++++|+++
T Consensus 356 ~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~ 434 (447)
T 3dw8_B 356 VVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVA 434 (447)
T ss_dssp EEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred EEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEE
Confidence 9999999999999999998776 33333221110 01223568899999999999999
Q ss_pred ecCceEEEEEcC
Q 040987 465 AENYCIHFYSLL 476 (762)
Q Consensus 465 ~~dg~i~i~d~~ 476 (762)
+.++ +++|..+
T Consensus 435 ~~~~-~~~~~~~ 445 (447)
T 3dw8_B 435 TTNN-LYIFQDK 445 (447)
T ss_dssp CSSC-EEEEECC
T ss_pred ecce-eeeeccc
Confidence 8876 7888643
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.6e-33 Score=290.85 Aligned_cols=288 Identities=11% Similarity=0.189 Sum_probs=235.6
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.+..++|+++ +.|++| .|++|++||..+++... ...+...|++++|+|+|++|++|+.|+.|++||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3567999976 467665 58999999999998753 345677899999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
+.+|. ..+.++++ ++..+++++.|+.+++||.......... ...| ...+..+.++|+++
T Consensus 185 ~~~h~----------~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~---~~~h------~~~~~~~~~~~~g~ 243 (420)
T 4gga_A 185 MTSHS----------ARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT---LSGH------SQEVCGLRWAPDGR 243 (420)
T ss_dssp ECCCS----------SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE---EECC------SSCEEEEEECTTSS
T ss_pred EeCCC----------CceEEEee--CCCEEEEEeCCCceeEeeecccceeeEE---eccc------ccceeeeeecCCCC
Confidence 99887 66676665 5679999999999999999875443221 1222 67799999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEE--EeCCCcEEEEEccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVS--SSYGGDFKVWICNDEL 588 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~--~~~dg~i~iwd~~~~~ 588 (762)
++++++ .|+.+++|+..+++...... .....| ...|.+++|+|++. ++++ |+.|++|++||+.++.
T Consensus 244 ~l~s~~---------~D~~v~i~~~~~~~~~~~~~-~~~~~~-~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~ 312 (420)
T 4gga_A 244 HLASGG---------NDNLVNVWPSAPGEGGWVPL-QTFTQH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312 (420)
T ss_dssp EEEEEE---------TTSCEEEEESSCCSSCSCCS-EEECCC-SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred eeeeee---------ccccceEEeeccccccceee-eeeccc-CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence 999999 89999999998876432211 113567 88999999999765 4444 3479999999999887
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc---CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA---ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLV 665 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~---d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~ 665 (762)
....+. +...+.++.|+|+++.+++++ |+.|+|||+.+++++..+.+|.+.|++++|+|||++|+
T Consensus 313 ~~~~~~------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 313 CLSAVD------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EEEEEE------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred cceeec------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 766552 456889999999999888753 89999999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEECCCCceeeEEE
Q 040987 666 ATSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 666 s~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
|++.|++ |++||+.+.......+
T Consensus 381 S~s~D~t--vriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 381 SAAADET--LRLWRCFELDPARRRE 403 (420)
T ss_dssp EEETTTE--EEEECCSCSSCC----
T ss_pred EEecCCe--EEEEECCCCCccchhh
Confidence 9999998 9999998766554443
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-33 Score=286.03 Aligned_cols=280 Identities=12% Similarity=0.119 Sum_probs=234.4
Q ss_pred eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc----eeccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEE
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK----KKFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLK 422 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d 422 (762)
...+|.+.|.+++|+|++++|++++.|+.|++||+.+++ ......+...|.+++|+|+++ +|++++.++.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 445799999999999999999999999999999999888 556668889999999999999 999999999999999
Q ss_pred c-CCceEEEEEcc--CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC---------CCceeeEEeeccc
Q 040987 423 M-PSMEIIRSISG--IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD---------DRGISEVQVCERN 490 (762)
Q Consensus 423 ~-~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~ 490 (762)
+ .+++. ..+.+ |. ..|.+++|+| ++++++++.|+.|++||+.+ ++.+..+.
T Consensus 86 ~~~~~~~-~~~~~~~~~----------~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----- 148 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEAN----------LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----- 148 (342)
T ss_dssp SSSSSSE-EECBSCCCC----------SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-----
T ss_pred eccCCce-EeccccCCC----------CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-----
Confidence 9 87755 55665 55 7899999999 99999999999999999976 44333221
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEeecCCCCCceEEEEEcC-CCC
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVYEPHRDAGISAVAFHP-NRR 568 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~ 568 (762)
+...+.+++|+|++ +++++ .++.|++||+.+ ........ ...| ...+.+++|+| +++
T Consensus 149 ------~~~~v~~~~~~~~~--l~~~~---------~d~~i~i~d~~~~~~~~~~~~---~~~~-~~~i~~i~~~~~~~~ 207 (342)
T 1yfq_A 149 ------VKNKIFTMDTNSSR--LIVGM---------NNSQVQWFRLPLCEDDNGTIE---ESGL-KYQIRDVALLPKEQE 207 (342)
T ss_dssp ------SCCCEEEEEECSSE--EEEEE---------STTEEEEEESSCCTTCCCEEE---ECSC-SSCEEEEEECSGGGC
T ss_pred ------eCCceEEEEecCCc--EEEEe---------CCCeEEEEECCccccccceee---ecCC-CCceeEEEECCCCCC
Confidence 26779999999988 77887 889999999998 55432222 2466 78999999999 999
Q ss_pred eEEEEeCCCcEEEEEcccc------cccccccCCceeeeee---cccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 569 AAVSSSYGGDFKVWICNDE------LQQKDLQSSGWSCHAV---GSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 569 ~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
++++++.||.+++|++... .....+. ++.. ...|...|.+++|+|++++|++++ ||.|++||+.+
T Consensus 208 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR-----CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEEEEETTSEEEEEECCTTCCSTTCTTCEEEE-----CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EEEEEecCCcEEEEEEcCCCcccccccceeee-----cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 9999999999999999876 3322221 1100 112345999999999999999998 99999999999
Q ss_pred CeEEEEeccc-cCceeEEEEeCCCCEEEEEEcCCC
Q 040987 639 NVLVAVIGET-LTPIMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 639 ~~~~~~l~~~-~~~v~~~~~s~dg~~l~s~~~d~~ 672 (762)
++++..+.+| ..+|.+++ ||+++|++++.||.
T Consensus 283 ~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 283 RKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp TEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred HhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 9999999998 99999999 99999999999984
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=274.90 Aligned_cols=281 Identities=11% Similarity=0.195 Sum_probs=231.6
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCceec---cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
...++||+++ .|++| .|++|++||+.+++... ...|...|.+++|+|+++++++|+.|+.|++|++++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999886 66655 58999999999998753 3467778999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
.+|. ..+. ++++++..+++++.++.+++|+........... ..| ...+..+.+++++++
T Consensus 106 ~~h~----------~~~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~ 164 (318)
T 4ggc_A 106 TSHS----------ARVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL---SGH------SQEVCGLRWAPDGRH 164 (318)
T ss_dssp ECCS----------SCEE--EEEEETTEEEEEETTSEEEEEETTSSSCEEEEE---ECC------SSCEEEEEECTTSSE
T ss_pred cCcc----------ceEE--EeecCCCEEEEEecCCceEeeecCCCceeEEEE---cCc------cCceEEEEEcCCCCE
Confidence 9887 4444 455667899999999999999988765432221 222 667999999999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE---EEEeCCCcEEEEEcccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA---VSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l---~~~~~dg~i~iwd~~~~~~ 589 (762)
+++++ .|+.|++||+.+++....... ....+ .+.|.+++++|++..+ ++++.++.|++||......
T Consensus 165 l~s~~---------~d~~i~iwd~~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 165 LASGG---------NDNLVNVWPSAPGEGGWVPLQ-TFTQH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp EEEEE---------TTSCEEEEESSCBTTBSCCSE-EECCC-CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred EEEEe---------cCcceeEEECCCCccccccee-eeccc-CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 99999 899999999998765332211 12456 7789999999987644 3556789999999987765
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE--c-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEE
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA--A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~--~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s 666 (762)
.... .+...+..+.|+|+++.++++ + |+.|++||+.+++++..+.+|.+.|++++|+|||++|+|
T Consensus 234 ~~~~------------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 234 LSAV------------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp EEEE------------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred cccc------------cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 5443 357789999999999988765 3 899999999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEECCCCc
Q 040987 667 TSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~ 684 (762)
++.|+. |++||+.+..
T Consensus 302 ~s~D~~--v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADET--LRLWRCFELD 317 (318)
T ss_dssp EETTTE--EEEECCSCCC
T ss_pred EecCCe--EEEEECCCCC
Confidence 999998 9999997653
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.7e-33 Score=294.79 Aligned_cols=320 Identities=13% Similarity=0.174 Sum_probs=232.5
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-----
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP----- 353 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----- 353 (762)
.+.+.|.+++|+|+|++||+|+.||.|++|++.+++..... .....+....+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-------------------~~~~~~~~~~~~~h~~~~~~ 86 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-------------------SRGEYNVYSTFQSHEPEFDY 86 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-------------------CCCCEEEEEEEECCCCEEEG
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-------------------cccceeEecccccccccccc
Confidence 46789999999999999999999999999998765421100 001123456778888
Q ss_pred -------cceeEEEEecCC--CEEEEEecCCeEEEEecCCCce-------------------------------------
Q 040987 354 -------SEVSVLIFSSDG--AYLYSGGKEGVLVVWQLDTGKK------------------------------------- 387 (762)
Q Consensus 354 -------~~v~~~~~s~~g--~~l~s~~~dg~i~~wd~~~~~~------------------------------------- 387 (762)
..|.+++|+|++ .+|++++.|++|++||+.++..
T Consensus 87 ~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
T 3dw8_B 87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA 166 (447)
T ss_dssp GGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred cccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence 889999999998 7999999999999999987443
Q ss_pred ----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEE
Q 040987 388 ----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLV 461 (762)
Q Consensus 388 ----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 461 (762)
.....|...|.+++|+|++++|+++ .|+.|++||+.+ ++.+..+.... .....|...|.+++|+|++ ++|
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l 242 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKP---ANMEELTEVITAAEFHPNSCNTF 242 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCC---SSGGGCCCCEEEEEECSSCTTEE
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccc---ccccccCcceEEEEECCCCCcEE
Confidence 1235688899999999999999998 899999999994 44444331110 0111234789999999998 999
Q ss_pred EEeecCceEEEEEcCCCCc----eeeEEeecccc--cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 462 ALRAENYCIHFYSLLDDRG----ISEVQVCERNH--QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
++++.||.|++||+.+++. ...+....... .....|...|.+++|+|+|++|++++ . +.|++||
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------~-~~v~iwd 312 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD---------Y-LSVKVWD 312 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE---------S-SEEEEEE
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee---------C-CeEEEEe
Confidence 9999999999999998875 33332211000 00000113799999999999999997 7 9999999
Q ss_pred ecC-CCceeEEEEEeecCCCCCc---------------eEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCC---
Q 040987 536 SGT-QNKEFTLSTIVYEPHRDAG---------------ISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSS--- 596 (762)
Q Consensus 536 ~~~-~~~~~~~~~~~~~~h~~~~---------------v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--- 596 (762)
+.. ++....+ .+| ... +..++|+|++++|++++.||.|++||+.+++........
T Consensus 313 ~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 386 (447)
T 3dw8_B 313 LNMENRPVETY-----QVH-EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENN 386 (447)
T ss_dssp TTCCSSCSCCE-----ESC-GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTC
T ss_pred CCCCcccccee-----ecc-ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccc
Confidence 987 6655554 344 321 334999999999999999999999999987654321100
Q ss_pred ----cee--------------eeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 040987 597 ----GWS--------------CHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637 (762)
Q Consensus 597 ----~~~--------------~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~ 637 (762)
... ...........|..++|+|++.+||+++.+.+++|..+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 387 KPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp CTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred ccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence 000 00001123567899999999999999996668888754
No 99
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.7e-32 Score=279.55 Aligned_cols=309 Identities=11% Similarity=0.088 Sum_probs=231.5
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCC--CCCeEEEEecCCcEE
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESP--DPSLSSISCADNQVH 419 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~ 419 (762)
..+.+|.+.|.+++|+|++++|++++.||.|++||+.++.. ..+..|...|.+++|+| ++++|++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 56788999999999999999999999999999999987642 23567889999999999 699999999999999
Q ss_pred EEEcCCc---------eEEEEEccCCCCCCCCCcccCceeeEEEeCC--CCEEEEeecCceEEEEEcCCCCceeeEEeec
Q 040987 420 LLKMPSM---------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHD--GGLVALRAENYCIHFYSLLDDRGISEVQVCE 488 (762)
Q Consensus 420 i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 488 (762)
+||+.++ +....+..|. ..+.+++|+|+ ++++++++.|+.|++||+.+++.+..+....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSK----------GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCS----------SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred EEecCCCcccccccCcceeeeecccC----------CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc
Confidence 9999886 5677777776 78999999999 9999999999999999999887655443211
Q ss_pred cc---ccCCCCcceeEEEEEEecC---CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEE
Q 040987 489 RN---HQPGDDVTVVVTLVALSQD---GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA 562 (762)
Q Consensus 489 ~~---~~~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~ 562 (762)
.. ......+...+.+++|+|+ +.++++++ .++.+.+|+...+.... +. .+.+| ...|++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~-~~--~~~~h-~~~i~~~~ 221 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA---------LEQAIIYQRGKDGKLHV-AA--KLPGH-KSLIRSIS 221 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE---------TTEEEEEEECTTSCEEE-EE--ECCCC-CSCEEEEE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEec---------CCCcEEEEccCCCceee-ee--ecCCC-CcceeEEE
Confidence 11 0111234677999999997 89999998 88888777776664322 21 24678 89999999
Q ss_pred EcCCC----CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-----CCeEEE
Q 040987 563 FHPNR----RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-----ETVITL 633 (762)
Q Consensus 563 ~spd~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-----d~~i~i 633 (762)
|+|++ ++|++++.||.|++||+..+....... .+.........+++...++.+. ...+.+
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE-----------ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL 290 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------------------
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC-----------CcccceeccCCCcccccccccccccccceeeee
Confidence 99998 899999999999999998765443321 1223334444555555555442 456777
Q ss_pred EeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEE
Q 040987 634 WDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLL 691 (762)
Q Consensus 634 wd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~ 691 (762)
|+....+++..+.+|...|++++|+|++++|++++.||. |++||+.+++....+..
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~--v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGK--VRLWKATYSNEFKCMSV 346 (351)
T ss_dssp CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSC--EEEEEECTTSCEEEEEE
T ss_pred cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCc--EEEEecCcCcchhheee
Confidence 787788899999999999999999999999999999998 99999999887766554
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-33 Score=288.45 Aligned_cols=257 Identities=19% Similarity=0.234 Sum_probs=216.4
Q ss_pred eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc--cceEEeeecCCccceeEEEEeCC--CCcccceeeeEEee
Q 040987 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--TGLQISSLEGHKAPVTTVIVVPA--STPATKILSYCWTA 139 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~--~~~~~~~l~~h~~~V~~v~~s~~--~~~~~~l~~~l~s~ 139 (762)
...+.+|.+.|.+ ++|+|||++||+++ |+.|+|||+. +++.+..+.+|...|++++|+++ + .+|+++
T Consensus 4 ~~~~~~h~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~l~s~ 75 (379)
T 3jrp_A 4 VVIANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-------TILASC 75 (379)
T ss_dssp -CCEEECCCCEEE-EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-------SEEEEE
T ss_pred cEEecCCcccEEE-EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-------CEEEEe
Confidence 3567899999998 99999999999998 7999999998 77888999999999999999987 7 688999
Q ss_pred ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 140 s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+.|++|++||+.+++....
T Consensus 76 ~~dg~v~iwd~~~~~~~~~------------------------------------------------------------- 94 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQI------------------------------------------------------------- 94 (379)
T ss_dssp ETTSCEEEEEEETTEEEEE-------------------------------------------------------------
T ss_pred ccCCEEEEEEcCCCceeEe-------------------------------------------------------------
Confidence 9999999999988752211
Q ss_pred ecCCccccceeeeccCCCceEEEECCC--CCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-----
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSS--GKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP----- 291 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----- 291 (762)
.....|...|.+++|+|+ +++|++ +.|+.|++||+...... .......|...|.+++|+|
T Consensus 95 ---------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 95 ---------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp ---------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---CEEEEECCTTCEEEEEECCCC---
T ss_pred ---------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---eeEEecCCCCceEEEEEcCccccc
Confidence 122346778899999999 888885 57999999999987542 2245568999999999999
Q ss_pred --------CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 292 --------TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 292 --------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
++++|++++.||.|++||+..+.... .....+.+|...|.+++|+|
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------------------~~~~~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------VLESTLEGHSDWVRDVAWSP 216 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEE--------------------------EEEEEECCCSSCEEEEEECC
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcce--------------------------eeEEEEecccCcEeEEEECC
Confidence 69999999999999999997653221 23467788999999999999
Q ss_pred C---CCEEEEEecCCeEEEEecCCCc----ee--ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 364 D---GAYLYSGGKEGVLVVWQLDTGK----KK--FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 364 ~---g~~l~s~~~dg~i~~wd~~~~~----~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
+ +++|++++.||.|++||+.++. .. ....+...+.+++|+|++++|++++.||.|++|++.....
T Consensus 217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 9 8999999999999999999874 12 2334778999999999999999999999999999985433
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-32 Score=280.34 Aligned_cols=285 Identities=11% Similarity=0.091 Sum_probs=236.1
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
.+..+|.+.|.+++|+|++++|++++.||.|++|++.++... .....+.+|..
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---------------------------~~~~~~~~~~~ 57 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------------VDLLQSLRYKH 57 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE---------------------------EEEEEEEECSS
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc---------------------------ccceeeeecCC
Confidence 445589999999999999999999999999999998765411 11245568999
Q ss_pred ceeEEEEecCCC-EEEEEecCCeEEEEec-CCCceeccCC--CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-----
Q 040987 355 EVSVLIFSSDGA-YLYSGGKEGVLVVWQL-DTGKKKFLPR--IGSPLLYFTESPDPSLSSISCADNQVHLLKMPS----- 425 (762)
Q Consensus 355 ~v~~~~~s~~g~-~l~s~~~dg~i~~wd~-~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~----- 425 (762)
.|.+++|+|+++ +|++++.|+.|++||+ .+++...+.. |...|.+++|+| ++++++++.|+.|++||+.+
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 999999999999 9999999999999999 9888877888 999999999999 99999999999999999886
Q ss_pred ----ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC-CCceeeEEeecccccCCCCccee
Q 040987 426 ----MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD-DRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 426 ----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
++++..+. +...+.+++|+|++ +++++.++.|++||+.+ +......... .+ ...
T Consensus 137 ~~~~~~~~~~~~-----------~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~------~~~ 195 (342)
T 1yfq_A 137 IAVKNLNSNNTK-----------VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEES--GL------KYQ 195 (342)
T ss_dssp EEEEESCSSSSS-----------SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEEC--SC------SSC
T ss_pred ccccCCeeeEEe-----------eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeec--CC------CCc
Confidence 44433333 23789999999987 99999999999999987 5443222211 11 567
Q ss_pred EEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCC------CceeEEEEEeecCCC--------CCceEEEEEcC
Q 040987 501 VTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ------NKEFTLSTIVYEPHR--------DAGISAVAFHP 565 (762)
Q Consensus 501 v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~h~--------~~~v~~~~~sp 565 (762)
+.+++|+| +++++++++ .++.|++|+++.. +....+. .|. ...|.+++|+|
T Consensus 196 i~~i~~~~~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 196 IRDVALLPKEQEGYACSS---------IDGRVAVEFFDDQGDDYNSSKRFAFR-----CHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp EEEEEECSGGGCEEEEEE---------TTSEEEEEECCTTCCSTTCTTCEEEE-----CCCCCTTCCSSCCCEEEEEECT
T ss_pred eeEEEECCCCCCEEEEEe---------cCCcEEEEEEcCCCcccccccceeee-----cccccccccccceeEEEEEEcC
Confidence 99999999 999999999 8899999999887 5554443 340 34899999999
Q ss_pred CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC-CCCeEEEEEcCCCcEEEEEc-CCe-EEEEe
Q 040987 566 NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK-KKAMTAAAFSADGSVLAVAA-ETV-ITLWD 635 (762)
Q Consensus 566 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~dg~~la~~~-d~~-i~iwd 635 (762)
++++|++++.||.|++||+.+++....+ ..| ...|++++ |+|++|++++ ||. .+.|.
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTRKKIKNF-----------AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEEEC-----------CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCCEEEEecCCceEEEEcCccHhHhhhh-----------hcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9999999999999999999988766554 355 88999999 9999999998 998 55444
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.4e-32 Score=289.47 Aligned_cols=278 Identities=16% Similarity=0.272 Sum_probs=229.9
Q ss_pred ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEE
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKY 147 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~v 147 (762)
.+|...|.+ +++|+++||+|+ ||.|+|||+.+++.+..+.+|.+.|++++| ++ .+|++|+.||+|++
T Consensus 130 ~~~~~~v~~---~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-------~~l~sg~~dg~i~v 197 (435)
T 1p22_A 130 SETSKGVYC---LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-------RVIITGSSDSTVRV 197 (435)
T ss_dssp CSSCCCEEE---EECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-------SEEEEEETTSCEEE
T ss_pred cCCCCcEEE---EEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-------CEEEEEcCCCeEEE
Confidence 345566765 555999999999 799999999999999999999999999999 67 68899999999999
Q ss_pred EeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccc
Q 040987 148 WDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLA 227 (762)
Q Consensus 148 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~ 227 (762)
||+.+++++..+..
T Consensus 198 wd~~~~~~~~~~~~------------------------------------------------------------------ 211 (435)
T 1p22_A 198 WDVNTGEMLNTLIH------------------------------------------------------------------ 211 (435)
T ss_dssp EESSSCCEEEEECC------------------------------------------------------------------
T ss_pred EECCCCcEEEEEcC------------------------------------------------------------------
Confidence 99999887765543
Q ss_pred ceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEE
Q 040987 228 GGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306 (762)
Q Consensus 228 ~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 306 (762)
|...|.+++|++ .+++ ++.|+.|++||+.+++.. .......+|...|.+++| ++++|++|+.||.|+
T Consensus 212 ------h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 212 ------HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI--TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp ------CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC--EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred ------CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc--eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 455667777764 3565 567999999999887654 334567789999999999 788999999999999
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+||+.+++ .+..+.+|...|.++.| +++++++++.|+.|++||+++++
T Consensus 280 vwd~~~~~------------------------------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 280 VWNTSTCE------------------------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp EEETTTCC------------------------------EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC
T ss_pred EEECCcCc------------------------------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC
Confidence 99997764 34677889999999998 46799999999999999999988
Q ss_pred ee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce---------EEEEEccCCCCCCCCCcccCceeeEEEeC
Q 040987 387 KK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME---------IIRSISGIKLPCPLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 387 ~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 456 (762)
.. .+..|...+.+++| +++++++++.||.|++||+.++. .+..+.+|. +.|.+++|
T Consensus 328 ~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~l~~-- 393 (435)
T 1p22_A 328 CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS----------GRVFRLQF-- 393 (435)
T ss_dssp EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS----------SCCCCEEE--
T ss_pred EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC----------CCeEEEEe--
Confidence 75 46668889999998 78999999999999999998765 788888877 78899999
Q ss_pred CCCEEEEeecCceEEEEEcCCCCcee
Q 040987 457 DGGLVALRAENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 457 ~~~~l~~~~~dg~i~i~d~~~~~~~~ 482 (762)
++++|++++.||.|++||+.+.....
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp CSSCEEECCSSSEEEEEC--------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 78899999999999999998765433
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.6e-32 Score=280.44 Aligned_cols=298 Identities=16% Similarity=0.168 Sum_probs=236.9
Q ss_pred ccceeeeccccceeEEEEecC---CCEEEEEecCCeEEEEecCC-Cce--eccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 344 DLCTTWHWHPSEVSVLIFSSD---GAYLYSGGKEGVLVVWQLDT-GKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~i~~wd~~~-~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
+.+..+.+|...|.+++|+|+ |++|++++.||.|++||+.+ +.. ..+..|...|.+++|+|++++|++++.|+.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 455678899999999999999 69999999999999999997 444 356678899999999999999999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE--eCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF--NHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
|++||+.+++.... ..|. ..|.+++| +|++++|++++.|+.|++||+.+++.+..+..
T Consensus 110 v~iwd~~~~~~~~~-~~~~----------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------- 169 (368)
T 3mmy_A 110 AKMWDLSSNQAIQI-AQHD----------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL--------- 169 (368)
T ss_dssp EEEEETTTTEEEEE-EECS----------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC---------
T ss_pred EEEEEcCCCCceee-cccc----------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec---------
Confidence 99999999887764 4454 78999999 89999999999999999999999887776654
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe----EE
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA----AV 571 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~----l~ 571 (762)
...+.++.+.+ ..+++++ .++.+.+|++........... ..+ ...+.++++.++... ++
T Consensus 170 --~~~~~~~~~~~--~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 170 --PERCYCADVIY--PMAVVAT---------AERGLIVYQLENQPSEFRRIE---SPL-KHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp --SSCEEEEEEET--TEEEEEE---------GGGCEEEEECSSSCEEEEECC---CSC-SSCEEEEEEEECTTSCEEEEE
T ss_pred --CCCceEEEecC--CeeEEEe---------CCCcEEEEEeccccchhhhcc---ccc-cCCCceEEEcccCCCCCCeEE
Confidence 23455666554 4677777 788999999987755433221 233 456677777766655 99
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeee------ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHA------VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
+++.||.|++||+.......... .+..+. ....|...|++++|+|++++|++++ ||.|++||+.+++++..
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNF--TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSE--EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred EecCCCcEEEEecCCCCccccce--eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 99999999999998774311110 111110 0112223799999999999999998 99999999999999999
Q ss_pred eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 645 IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 645 l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.+|..+|.+++|+|||++|++++.|+. .+.|++-+
T Consensus 311 ~~~~~~~v~~~~~s~~g~~l~~~s~d~~--~~~~~~~~ 346 (368)
T 3mmy_A 311 SEQLDQPISACCFNHNGNIFAYASSYDW--SKGHEFYN 346 (368)
T ss_dssp CCCCSSCEEEEEECTTSSCEEEEECCCS--TTCGGGCC
T ss_pred ecCCCCCceEEEECCCCCeEEEEecccc--cccccccC
Confidence 9999999999999999999999999875 44444433
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.9e-32 Score=280.33 Aligned_cols=312 Identities=11% Similarity=0.152 Sum_probs=225.4
Q ss_pred eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc----eEEeeecCCccceeEEEEeC--CCCcccceeeeEE
Q 040987 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----LQISSLEGHKAPVTTVIVVP--ASTPATKILSYCW 137 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~----~~~~~l~~h~~~V~~v~~s~--~~~~~~~l~~~l~ 137 (762)
+..+.+|.+.|.+ ++|+|+|++||+++ |+.|+|||+.++ +.+..+.+|...|++++|+| ++ .+|+
T Consensus 4 ~~~~~gH~~~v~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-------~~l~ 75 (351)
T 3f3f_A 4 QPFDSGHDDLVHD-VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-------RIIA 75 (351)
T ss_dssp CCEECCCSSCEEE-EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-------SEEE
T ss_pred cccCcccccceeE-EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-------CEEE
Confidence 3456899999998 99999999999999 799999999877 57788899999999999999 57 6889
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
+++.|++|++||+.+++...... .
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~---~----------------------------------------------------- 99 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGR---R----------------------------------------------------- 99 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSC---S-----------------------------------------------------
T ss_pred EEcCCCeEEEEecCCCccccccc---C-----------------------------------------------------
Confidence 99999999999998764210000 0
Q ss_pred EEecCCccccceeeeccCCCceEEEECCC--CCEEEE-EeCCeEEEEEccCchhhhheee--------eeeeccCcCeEE
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSS--GKYFGI-RKQRKLLIWKVPDVEAERVVMR--------KITLHHTKKLTV 286 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~-~~~~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~v~~ 286 (762)
.+.. .....|...|.+++|+|+ +++|++ +.|+.|++||+.+++....... .....|...+.+
T Consensus 100 ------~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 100 ------WNKL-CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp ------EEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred ------ccee-eeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 0000 233457788999999999 998885 5799999999998775411100 011267889999
Q ss_pred EEEcCC---CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 287 LAFHPT---QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 287 ~~~sp~---~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
++|+|+ +.++++++.++.+.+|+...++. ..+..+.+|...|.+++|+|
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~h~~~i~~~~~~p 224 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL----------------------------HVAAKLPGHKSLIRSISWAP 224 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCE----------------------------EEEEECCCCCSCEEEEEECC
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCce----------------------------eeeeecCCCCcceeEEEECC
Confidence 999997 89999999999998887655432 12467788999999999999
Q ss_pred CC----CEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEe----cCCcEEEEEcCCceEEEEEcc
Q 040987 364 DG----AYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISC----ADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 364 ~g----~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~ 434 (762)
++ ++|++++.|+.|++||+.++..... ............++....+..+. ....+.+|+....+.+..+.+
T Consensus 225 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 225 SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence 98 8999999999999999987655322 22222233333334333333332 334556666666778888888
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQ 485 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 485 (762)
|. ..|.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 305 h~----------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 305 HN----------GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp TS----------SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred cc----------ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 77 789999999999999999999999999999887665544
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-32 Score=284.34 Aligned_cols=260 Identities=13% Similarity=0.130 Sum_probs=220.2
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|...|.+++|+|++++|++|+.||.|++|++..... .....+.+|..
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------------------------~~~~~~~~h~~ 56 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH----------------------------KLIDTLTGHEG 56 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE----------------------------EEEEEECCCSS
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc----------------------------eeeeEecCCCC
Confidence 56789999999999999999999999999999999863321 23467889999
Q ss_pred ceeEEEEecC--CCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSSD--GAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~--g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
.|.+++|+++ +++|++++.|+.|++||+.+++. .....+...+.+++|+|+ +.++++++.|+.|++||+.++.
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 9999999977 89999999999999999999862 456668889999999999 9999999999999999998863
Q ss_pred --EEEEEccCCCCCCCCCcccCceeeEEEeC-------------CCCEEEEeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 428 --IIRSISGIKLPCPLPEEYKGLCRDIAFNH-------------DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 428 --~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
....+..|. ..+.+++|+| ++.++++++.|+.|++||+.++............|
T Consensus 137 ~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h- 205 (379)
T 3jrp_A 137 TTSPIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH- 205 (379)
T ss_dssp CCCEEEEECCT----------TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-
T ss_pred ceeeEEecCCC----------CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-
Confidence 334455555 7899999999 69999999999999999998877665554444444
Q ss_pred CCCCcceeEEEEEEecC---CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 493 PGDDVTVVVTLVALSQD---GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
...|.+++|+|+ +++|++++ .|+.|++||+.++.............| ...|.+++|+|++++
T Consensus 206 -----~~~v~~~~~sp~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ 270 (379)
T 3jrp_A 206 -----SDWVRDVAWSPTVLLRSYLASVS---------QDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNV 270 (379)
T ss_dssp -----SSCEEEEEECCCCSSSEEEEEEE---------TTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCC
T ss_pred -----cCcEeEEEECCCCCCCCeEEEEe---------CCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCE
Confidence 678999999999 89999999 889999999998765433333333457 889999999999999
Q ss_pred EEEEeCCCcEEEEEccccc
Q 040987 570 AVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~ 588 (762)
|++++.||.|++|++....
T Consensus 271 l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 271 LALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEESSSSEEEEEEEETT
T ss_pred EEEecCCCcEEEEeCCCCC
Confidence 9999999999999998643
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.5e-32 Score=281.95 Aligned_cols=291 Identities=15% Similarity=0.233 Sum_probs=237.0
Q ss_pred eeeeccCcCeEEEEEcCC---CcEEEEeecCCeEEEEeccC-CceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 275 KITLHHTKKLTVLAFHPT---QRIVAAGDVTGRILIWRGFG-DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~---~~~l~~~~~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +.. ....+.
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----------------------------~~~~~~ 83 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----------------------------IPKAQQ 83 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----------------------------EEEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----------------------------eEEEec
Confidence 567799999999999999 69999999999999999976 322 125778
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEe--CCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTE--SPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
+|...|.+++|+|++++|++++.|+.|++||+.+++......|...|.+++| ++++++|++++.|+.|++||+.+++.
T Consensus 84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 8999999999999999999999999999999999998888889999999999 99999999999999999999999988
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
+..+..+. .+.++.+. ...+++++.++.+++|++.............. .....++++.+
T Consensus 164 ~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 222 (368)
T 3mmy_A 164 MMVLQLPE-----------RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPL--------KHQHRCVAIFK 222 (368)
T ss_dssp SEEEECSS-----------CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSC--------SSCEEEEEEEE
T ss_pred EEEEecCC-----------CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccc--------cCCCceEEEcc
Confidence 88887653 44555555 45888899999999999987654332222111 34466777776
Q ss_pred CCCe----EEEEeeeccccCCCceeEEEEEEecCCCc---eeEEEEEeecCCCCC------------ceEEEEEcCCCCe
Q 040987 509 DGSL----MSTVDIKLAEEGIGSLVCLKFWVSGTQNK---EFTLSTIVYEPHRDA------------GISAVAFHPNRRA 569 (762)
Q Consensus 509 ~g~~----l~~~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~h~~~------------~v~~~~~spd~~~ 569 (762)
+... +++++ .++.|++|++..... ...+ .+| .. .|++++|+|++++
T Consensus 223 ~~~~~~~~~~~~~---------~dg~i~i~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~ 287 (368)
T 3mmy_A 223 DKQNKPTGFALGS---------IEGRVAIHYINPPNPAKDNFTF-----KCH-RSNGTNTSAPQDIYAVNGIAFHPVHGT 287 (368)
T ss_dssp CTTSCEEEEEEEE---------TTSEEEEEESSCSCHHHHSEEE-----ECS-EEC----CCCEEECCEEEEEECTTTCC
T ss_pred cCCCCCCeEEEec---------CCCcEEEEecCCCCccccceee-----eee-ecccccccccccccceEEEEEecCCCE
Confidence 6655 88888 899999999998743 3333 344 33 6999999999999
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCe---EEEEeCCCCeE
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETV---ITLWDPDRNVL 641 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~---i~iwd~~~~~~ 641 (762)
|++++.||.|++||+.+++....+ ..|...|++++|+|||++|++++ |+. +.+|+.+....
T Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~-----------~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~ 352 (368)
T 3mmy_A 288 LATVGSDGRFSFWDKDARTKLKTS-----------EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNY 352 (368)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEC-----------CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCE
T ss_pred EEEEccCCeEEEEECCCCcEEEEe-----------cCCCCCceEEEECCCCCeEEEEecccccccccccCCCccce
Confidence 999999999999999987766554 36789999999999999999997 654 44555554443
No 107
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.6e-32 Score=273.32 Aligned_cols=255 Identities=12% Similarity=0.092 Sum_probs=199.9
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
...+.+|.+.|++++|+|+|++||+|+.|++|++||+.++.. ..+..+.+|.
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~----------------------------~~~~~l~gH~ 57 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ----------------------------ILIADLRGHE 57 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE----------------------------EEEEEEECCS
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc----------------------------EEEEEEcCCC
Confidence 355678999999999999999999999999999999876532 1246788999
Q ss_pred cceeEEEEec--CCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCc
Q 040987 354 SEVSVLIFSS--DGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 354 ~~v~~~~~s~--~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~ 426 (762)
..|.+++|++ ++++|++++.|++|++||+++++. ..+..|...|.+++|+|+ +.+|++++.|+.|++||+..+
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 9999999985 489999999999999999998742 345678889999999998 789999999999999999875
Q ss_pred eEE---EEEccCCCCCCCCCcccCceeeEEEeCC-----------------CCEEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 427 EII---RSISGIKLPCPLPEEYKGLCRDIAFNHD-----------------GGLVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 427 ~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
... ..+.+|. ..+.+++|+|+ +++|++++.|+.|++||+......... .
T Consensus 138 ~~~~~~~~~~~h~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-~ 206 (316)
T 3bg1_A 138 GQWEVKKINNAHT----------IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE-Q 206 (316)
T ss_dssp SCEEECCBTTSSS----------SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE-E
T ss_pred CCcceeeeecccc----------CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee-e
Confidence 322 2334444 67889999997 478999999999999999754322221 1
Q ss_pred ecccccCCCCcceeEEEEEEecCC----CeEEEEeeeccccCCCceeEEEEEEecCCCce-eEEEEEeecCCCCCceEEE
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDG----SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE-FTLSTIVYEPHRDAGISAV 561 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g----~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~h~~~~v~~~ 561 (762)
...+| ...|.+++|+|++ ++|++++ .|++|++|++.+.... ... .....| ...|.++
T Consensus 207 ~l~~h------~~~V~~v~~sp~~~~~~~~las~s---------~D~~v~iw~~~~~~~~~~~~--~~~~~~-~~~v~~v 268 (316)
T 3bg1_A 207 KLEAH------SDWVRDVAWAPSIGLPTSTIASCS---------QDGRVFIWTCDDASSNTWSP--KLLHKF-NDVVWHV 268 (316)
T ss_dssp CCBCC------SSCEEEEECCCCSSCSCCEEEEEE---------TTCEEEEEECSSTTCCCCBC--CEEEEC-SSCEEEE
T ss_pred ecccC------CCceEEEEecCCCCCCCceEEEEc---------CCCeEEEEEccCccccchhh--hhhhcC-CCcEEEE
Confidence 22333 7789999999987 7899999 8999999999863210 000 012457 7899999
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 562 AFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 562 ~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
+|+|++++|++++.|++|++|+..
T Consensus 269 ~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 269 SWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999999975
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-31 Score=279.68 Aligned_cols=287 Identities=15% Similarity=0.102 Sum_probs=228.6
Q ss_pred cccccCCceeecCCCEEEEEeCCEEEEEEcccce---EEeeecC------------------------------------
Q 040987 72 RSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL---QISSLEG------------------------------------ 112 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~---~~~~l~~------------------------------------ 112 (762)
..++.+ ++|++||++|+++.++.|++||+++|+ .+..+..
T Consensus 4 ~~p~~~-v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQN-LLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCE-EEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEE-EEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 356776 999999999888889999999999998 6666653
Q ss_pred ------------------CccceeEEEEeCCCCcccceeee-EEeeecCCeEEEEeCC--CcceEEEEEeccceEEEeec
Q 040987 113 ------------------HKAPVTTVIVVPASTPATKILSY-CWTASLDGTIKYWDFS--VPELLKTIDVKFSIFSMVIP 171 (762)
Q Consensus 113 ------------------h~~~V~~v~~s~~~~~~~~l~~~-l~s~s~d~~i~vWd~~--~~~~~~~~~~~~~v~~~~~~ 171 (762)
|.+.|++++|+|++ .+ +++++.|++|++||+. +++++..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-------~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---------- 145 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-------SRLIACADSDKSLLVFDVDKTSKNVLKLRKR---------- 145 (450)
T ss_dssp -----------------CCCCCEEEEEECTTS-------SEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCC-------CEEEEEECCCCeEEEEECcCCCCceeeeeec----------
Confidence 33379999999999 56 4899999999999998 7777665532
Q ss_pred ccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE
Q 040987 172 SLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG 251 (762)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 251 (762)
..+...|.+++|+|++++|+
T Consensus 146 ------------------------------------------------------------~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 146 ------------------------------------------------------------FCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp ------------------------------------------------------------EECSSCEEEEEECTTSSEEE
T ss_pred ------------------------------------------------------------ccCCCCceEEEEcCCCCEEE
Confidence 12456788999999999998
Q ss_pred EE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC---CcEEEEeecCCeEEEEeccCCceeecccccccccc
Q 040987 252 IR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT---QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNL 327 (762)
Q Consensus 252 ~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 327 (762)
++ .++.+++|++.+++.... ....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++...
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---------- 234 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKF-TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD---------- 234 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSC-CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE----------
T ss_pred EEeCCCcEEEEecCCcccccc-cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee----------
Confidence 65 679999999988765300 22356789999999999999 9999999999999999997664322
Q ss_pred cccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC----------------
Q 040987 328 MNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP---------------- 391 (762)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~---------------- 391 (762)
..+.+|...|.+++|+ ++++|++++.|+.|++||+.+++.....
T Consensus 235 -------------------~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 235 -------------------KWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp -------------------EECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred -------------------eeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence 2256899999999999 9999999999999999999998864221
Q ss_pred ----------CCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEc--CCc---eEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 392 ----------RIGSPLLYFTESPDPSLSSISC-ADNQVHLLKM--PSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 392 ----------~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~--~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
.....+..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ +.+.+++|+
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-----------~~v~~~~~~ 363 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-----------YNVISLSAH 363 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-----------SCEEEEEEE
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-----------CceEEEEec
Confidence 2235789999999999999998 8999999999 555 666666654 478999999
Q ss_pred CCCCEEEEeec------CceEEEEEcCCC
Q 040987 456 HDGGLVALRAE------NYCIHFYSLLDD 478 (762)
Q Consensus 456 ~~~~~l~~~~~------dg~i~i~d~~~~ 478 (762)
|++.++++++. +..|.+|.+...
T Consensus 364 ~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 364 NDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp TTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 96544444333 445788876543
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.5e-30 Score=269.20 Aligned_cols=341 Identities=14% Similarity=0.081 Sum_probs=252.8
Q ss_pred eeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEE-EEe-CCEEEEEEcccceEEeeecCCccceeEE
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLL-VCT-SNTVSIFSTSTGLQISSLEGHKAPVTTV 120 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la-~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v 120 (762)
..++++++.|+.|++||..+++......+...+.+ ++|+|||++|+ +++ ++.|++||+++++.+..+..|. .|.++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE-EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcce-EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 46888999999999999998877765555556786 99999999874 554 6999999999999999998766 89999
Q ss_pred EEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccC
Q 040987 121 IVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETT 200 (762)
Q Consensus 121 ~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (762)
+|+|+++ .++++++.|++|++||+.+++.+..+..
T Consensus 80 ~~spdg~------~l~~~~~~~~~v~v~d~~~~~~~~~~~~--------------------------------------- 114 (391)
T 1l0q_A 80 AVSPDGK------QVYVTNMASSTLSVIDTTSNTVAGTVKT--------------------------------------- 114 (391)
T ss_dssp EECTTSS------EEEEEETTTTEEEEEETTTTEEEEEEEC---------------------------------------
T ss_pred EECCCCC------EEEEEECCCCEEEEEECCCCeEEEEEeC---------------------------------------
Confidence 9999994 2345666789999999999887655432
Q ss_pred cCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-EE-eCCeEEEEEccCchhhhheeeeeee
Q 040987 201 KSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IR-KQRKLLIWKVPDVEAERVVMRKITL 278 (762)
Q Consensus 201 ~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~-~~~~i~iwd~~~~~~~~~~~~~~~~ 278 (762)
...+.+++|+|+|++|+ ++ .++.|++||+.+++.. ....
T Consensus 115 ----------------------------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~ 155 (391)
T 1l0q_A 115 ----------------------------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI-----NTVS 155 (391)
T ss_dssp ----------------------------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEE
T ss_pred ----------------------------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-----EEEe
Confidence 23457889999999884 44 5899999999988753 3333
Q ss_pred ccCcCeEEEEEcCCCcEE-EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 279 HHTKKLTVLAFHPTQRIV-AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l-~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
. ...+.+++|+|++++| ++++.++.|++||+.+++.. ..+ .+...+.
T Consensus 156 ~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~------------------------------~~~-~~~~~~~ 203 (391)
T 1l0q_A 156 V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI------------------------------DTV-KVEAAPS 203 (391)
T ss_dssp C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE------------------------------EEE-ECSSEEE
T ss_pred c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE------------------------------EEE-ecCCCcc
Confidence 3 3567999999999887 56778899999999776432 222 2456789
Q ss_pred EEEEecCCCEEEEEe---cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcCCceEEEEEc
Q 040987 358 VLIFSSDGAYLYSGG---KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLS-SISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
+++|+|++++|++++ .++.|++||+.+++..........+.+++|+|+++++ ++++.++.|++||+.+++.+..+.
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 999999999999888 6899999999998876555555678999999999988 455779999999999999998887
Q ss_pred cCCCCCCCCCc----c-cCceeeEEEeCCC----------CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 434 GIKLPCPLPEE----Y-KGLCRDIAFNHDG----------GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 434 ~~~~~~~~~~~----~-~~~v~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
.+..+...... . ........|+.+. ..+...+.+...++|++..+.... . .
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~-----~---------~ 349 (391)
T 1l0q_A 284 VGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK-----K---------Q 349 (391)
T ss_dssp CSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC-----S---------S
T ss_pred CCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC-----c---------C
Confidence 76543210000 0 0001111222221 235555678889999997764311 0 1
Q ss_pred eeEEEEEEecCCCeEEEEe
Q 040987 499 VVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~~ 517 (762)
. ....|+++|.|.+...
T Consensus 350 ~--~~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 350 N--PTHTYSETGIYTVRLT 366 (391)
T ss_dssp S--CEECCSSCEEEEEEEE
T ss_pred C--CeEEeCCCceEEEEEE
Confidence 1 2357889988877654
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.2e-31 Score=279.86 Aligned_cols=279 Identities=18% Similarity=0.293 Sum_probs=234.0
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
.+|...|.++.+ ++++|++|+.||.|++||+.+++.. .+..|...|.+++| +++++++++.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 456677888776 7899999999999999999998875 46678889999998 789999999999999999999999
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
+..+.+|. ..|.+++|++ ..+++++.||.|++||+.++........ ..+| ...|.+++|
T Consensus 206 ~~~~~~h~----------~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~------~~~v~~~~~-- 264 (435)
T 1p22_A 206 LNTLIHHC----------EAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRV-LVGH------RAAVNVVDF-- 264 (435)
T ss_dssp EEEECCCC----------SCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEE-ECCC------SSCEEEEEE--
T ss_pred EEEEcCCC----------CcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeE-ecCC------CCcEEEEEe--
Confidence 99998877 7889999874 5999999999999999998776532222 2222 677899988
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+++++++++ .|+.|++||+.+++....+ .+| ...|.++.| +++++++++.||.|++||+.+++
T Consensus 265 ~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~-----~~~-~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 265 DDKYIVSAS---------GDRTIKVWNTSTCEFVRTL-----NGH-KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp ETTEEEEEE---------TTSEEEEEETTTCCEEEEE-----ECC-SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC
T ss_pred CCCEEEEEe---------CCCeEEEEECCcCcEEEEE-----cCC-CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC
Confidence 788999999 8999999999998876665 467 889999999 46799999999999999999877
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe---------EEEEeccccCceeEEEEe
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV---------LVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~---------~~~~l~~~~~~v~~~~~s 658 (762)
....+ ..|...|.+++| ++++|++|+ ||.|++||+.+++ ++..+.+|.+.|.+++|
T Consensus 328 ~~~~~-----------~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 393 (435)
T 1p22_A 328 CLRVL-----------EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF- 393 (435)
T ss_dssp EEEEE-----------CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-
T ss_pred EEEEE-----------eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-
Confidence 65544 468899999999 788999998 9999999998776 88899999999999999
Q ss_pred CCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 659 GSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 659 ~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
|+++|++++.||. |++||+.+.....
T Consensus 394 -~~~~l~s~s~Dg~--i~iwd~~~~~~~~ 419 (435)
T 1p22_A 394 -DEFQIVSSSHDDT--ILIWDFLNDPAAQ 419 (435)
T ss_dssp -CSSCEEECCSSSE--EEEEC--------
T ss_pred -CCCEEEEEeCCCE--EEEEECCCCCCcc
Confidence 7899999999998 9999998865543
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4e-31 Score=277.11 Aligned_cols=292 Identities=11% Similarity=0.126 Sum_probs=234.5
Q ss_pred CeEEEEEcCCCcEEE-EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 283 KLTVLAFHPTQRIVA-AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....++++|+...++ +++.||.|++|++....... .....+.+|...|.+++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~--------------------------~~~~~~~~h~~~V~~~~~ 89 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD--------------------------KNVPLVCGHTAPVLDIAW 89 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC--------------------------TTCCCBCCCSSCEEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC--------------------------CCCceEecCCCCEEEEEe
Confidence 344688888876444 57889999999985542211 234567889999999999
Q ss_pred ec-CCCEEEEEecCCeEEEEecCCCc-------e-eccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEE
Q 040987 362 SS-DGAYLYSGGKEGVLVVWQLDTGK-------K-KFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 362 s~-~g~~l~s~~~dg~i~~wd~~~~~-------~-~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
+| ++++|++++.||.|++||+.++. . ..+..|...|.+++|+|++ ++|++++.|+.|++||+.+++.+..
T Consensus 90 ~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 169 (402)
T 2aq5_A 90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT 169 (402)
T ss_dssp CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEE
Confidence 99 99999999999999999999873 2 3466788999999999998 6999999999999999999999998
Q ss_pred E--ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 432 I--SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 432 ~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+ ..|. ..|.+++|+|++++|++++.|+.|++||+++++.+..+.. .|. ...+.+++|+|+
T Consensus 170 ~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~ 231 (402)
T 2aq5_A 170 LGPDVHP----------DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR---PHE-----GTRPVHAVFVSE 231 (402)
T ss_dssp ECTTTCC----------SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC---SSC-----SSSCCEEEECST
T ss_pred EecCCCC----------CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc---CCC-----CCcceEEEEcCC
Confidence 8 6666 7899999999999999999999999999998876655421 110 223789999999
Q ss_pred CCeEEEE---eeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE-EeCCCcEEEEEcc
Q 040987 510 GSLMSTV---DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS-SSYGGDFKVWICN 585 (762)
Q Consensus 510 g~~l~~~---~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~-~~~dg~i~iwd~~ 585 (762)
+++|+++ + .++.|++||+.+......... ..| ...+.+++|+|++++|++ ++.|+.|++||+.
T Consensus 232 ~~~l~~g~~~~---------~d~~i~iwd~~~~~~~~~~~~---~~~-~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 232 GKILTTGFSRM---------SERQVALWDTKHLEEPLSLQE---LDT-SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp TEEEEEEECTT---------CCEEEEEEETTBCSSCSEEEE---CCC-CSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred CcEEEEeccCC---------CCceEEEEcCccccCCceEEe---ccC-CCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 9999998 5 789999999998765333321 345 678999999999999875 4579999999999
Q ss_pred cccc-cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeE
Q 040987 586 DELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVL 641 (762)
Q Consensus 586 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~ 641 (762)
+++. ...+. ...+...|.+++|+|++.++++ +++.+++|++.++++
T Consensus 299 ~~~~~~~~l~---------~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 299 SEAPFLHYLS---------MFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHERKC 345 (402)
T ss_dssp SSTTCEEEEE---------EECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEETTEE
T ss_pred CCCcceEeec---------ccccCCcccceEEeccccccee-cceeEEEEEcCCCcE
Confidence 8763 22221 1125689999999999998764 477999999988754
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.3e-31 Score=270.07 Aligned_cols=290 Identities=13% Similarity=0.114 Sum_probs=214.8
Q ss_pred EecCCccee-eeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeE
Q 040987 58 AEYPAVNSK-MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 58 ~~~~~~~~~-~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
|++...+.+ ...+|.+.|.+ ++|||||++||+|++..++|||+++++.+.....+ .+..++++++++ .++
T Consensus 4 ~s~~~~~~~~~~~~h~~~V~~-v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~ 74 (355)
T 3vu4_A 4 GSMITRNPIVPENHVSNPVTD-YEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR--HLSKVRMLHRTN------YVA 74 (355)
T ss_dssp ---------------CCCCCE-EEECTTSSEEEEECSSEEEEEEETTEEEEEEEECS--CCCEEEECTTSS------EEE
T ss_pred ccccccCCccccccCCCceEE-EEECCCCCEEEEEcCCEEEEEecCCcceeeeeecC--CeEEEEEcCCCC------EEE
Confidence 444544443 45889999998 99999999999999877899999988877665433 588899999984 334
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++++.|++|++||+.+++++..+..+.++.++.+. .+. ++ ...++.|
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~--------~~~-----~~--------------------~~~~~~i 121 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLS--------REF-----IV--------------------VSYGDVI 121 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEECSSCEEEEEEC--------SSE-----EE--------------------EEETTEE
T ss_pred EEECCccEEEEEECCCCcEEEEEECCCceEEEEEc--------CCE-----EE--------------------EEEcCEE
Confidence 67888999999999999999999877788888661 110 11 1257899
Q ss_pred EEEecCCc-cccceeeeccCCCceEEEECCCCCEEEEE---eCCeEEEEEccCchhhh-----------heeeeeeeccC
Q 040987 217 CKCNLTES-RLAGGVTLAEMKEPQVITISSSGKYFGIR---KQRKLLIWKVPDVEAER-----------VVMRKITLHHT 281 (762)
Q Consensus 217 ~iwd~~~~-~~~~~~~~~~~~~v~~~~~spdg~~la~~---~~~~i~iwd~~~~~~~~-----------~~~~~~~~~~~ 281 (762)
++||+.++ +.+..... ....+++++ .+++++ .++.|++||+.++.... .+....+.+|.
T Consensus 122 ~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~ 195 (355)
T 3vu4_A 122 SVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT 195 (355)
T ss_dssp EEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS
T ss_pred EEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC
Confidence 99999998 66533322 445567777 677643 68999999999865100 00135677999
Q ss_pred cCeEEEEEcCCCcEEEEeecCCe-EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-c-cccceeE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGR-ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-W-HPSEVSV 358 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~ 358 (762)
..|.+++|+|++++||+|+.||+ |++||+.+++. +..+. + |...|.+
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~------------------------------~~~~~~g~h~~~v~~ 245 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL------------------------------VREFRRGLDRADVVD 245 (355)
T ss_dssp SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE------------------------------EEEEECTTCCSCEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE------------------------------EEEEEcCCCCCcEEE
Confidence 99999999999999999999998 99999977643 35666 5 9999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCceec---c---------------------CCCCCCeEEEEeCCCCCeEEEEec
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---L---------------------PRIGSPLLYFTESPDPSLSSISCA 414 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~---------------------~~~~~~v~~~~~s~~~~~l~~~~~ 414 (762)
++|+|+|++|++++.|++|++||++.+.... + .....+...++|++|++.+++++.
T Consensus 246 ~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~ 325 (355)
T 3vu4_A 246 MKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH 325 (355)
T ss_dssp EEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT
T ss_pred EEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC
Confidence 9999999999999999999999998654211 0 001123467899999999999999
Q ss_pred CCcEEEEEcCC
Q 040987 415 DNQVHLLKMPS 425 (762)
Q Consensus 415 d~~i~i~d~~~ 425 (762)
||.+++|++..
T Consensus 326 dg~~~~~~~~~ 336 (355)
T 3vu4_A 326 TRMIETFKVVF 336 (355)
T ss_dssp TTEEEEEEEEE
T ss_pred CCeEEEEEEEc
Confidence 99999998764
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=7.4e-30 Score=266.74 Aligned_cols=310 Identities=14% Similarity=0.116 Sum_probs=242.2
Q ss_pred cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEE-EEEe
Q 040987 294 RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYL-YSGG 372 (762)
Q Consensus 294 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~ 372 (762)
..+++++.|+.|++||+.+++.. ..+..|. .+.+++|+|+++++ ++++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~------------------------------~~~~~~~-~~~~~~~s~dg~~l~~~~~ 51 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVT------------------------------ATIPVGS-NPMGAVISPDGTKVYVANA 51 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE------------------------------EEEECSS-SEEEEEECTTSSEEEEEEG
T ss_pred EEEEEcCCCCEEEEEECCCCeEE------------------------------EEeecCC-CcceEEECCCCCEEEEECC
Confidence 46778889999999999776433 4555554 58999999999987 5667
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.|+.|++||+.+++..........+.+++|+|+++++++++ .++.|++||+.+++.+..+..+ ..+.+
T Consensus 52 ~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-----------~~~~~ 120 (391)
T 1l0q_A 52 HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----------KSPLG 120 (391)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----------SSEEE
T ss_pred CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-----------CCcce
Confidence 89999999999998876666666999999999999886655 5699999999999988887754 36789
Q ss_pred EEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeE
Q 040987 452 IAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVC 530 (762)
Q Consensus 452 ~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~ 530 (762)
++|+|+++++ ++++.++.|++||+.+++....+.. ...+..++|+|+++++++++. .++.
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~--------~~~~ 181 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-----------GRSPKGIAVTPDGTKVYVANF--------DSMS 181 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------CSSEEEEEECTTSSEEEEEET--------TTTE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-----------CCCcceEEECCCCCEEEEEeC--------CCCE
Confidence 9999999987 6777899999999998876655443 234689999999998854431 7789
Q ss_pred EEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe---CCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 531 LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS---YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 531 i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
|++||+.+++....+. + ...+.+++|+|++++|++++ .++.|++||+.+++....++ .
T Consensus 182 v~~~d~~~~~~~~~~~------~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~------------~ 242 (391)
T 1l0q_A 182 ISVIDTVTNSVIDTVK------V-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP------------V 242 (391)
T ss_dssp EEEEETTTTEEEEEEE------C-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE------------C
T ss_pred EEEEECCCCeEEEEEe------c-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe------------c
Confidence 9999999886554442 3 55789999999999999888 68999999999877655442 2
Q ss_pred CCCeEEEEEcCCCcEEE-EEc-CCeEEEEeCCCCeEEEEeccccCcee---EEE------------EeCCC---------
Q 040987 608 KKAMTAAAFSADGSVLA-VAA-ETVITLWDPDRNVLVAVIGETLTPIM---NMS------------FVGSS--------- 661 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la-~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~---~~~------------~s~dg--------- 661 (762)
...+.+++|+|||++|+ +++ |+.|++||+.+++++..+..|..+.. .+. |+.+.
T Consensus 243 ~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~ 322 (391)
T 1l0q_A 243 GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSE 322 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTC
T ss_pred CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccc
Confidence 34578999999999884 556 99999999999999988876655421 122 33221
Q ss_pred -CEEEEEEcCCCCeEEEEECCCCce
Q 040987 662 -EYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 662 -~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
..+...+.|.. +++||+.+|..
T Consensus 323 ~~~~~~~~~~~~--~~~W~~~~g~~ 345 (391)
T 1l0q_A 323 PVQFTDLSKDAT--EWKWDFGDGSS 345 (391)
T ss_dssp CEEEEECCBSCS--EEEEECSSSCE
T ss_pred eEEEEeCCCCce--EEEEECCCCcc
Confidence 33555566776 99999988764
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-30 Score=273.81 Aligned_cols=298 Identities=13% Similarity=0.162 Sum_probs=237.6
Q ss_pred CceEEEECCCCCEEE--EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCC
Q 040987 237 EPQVITISSSGKYFG--IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 237 ~v~~~~~spdg~~la--~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
....++++|+...++ ++.+|.|+||++....... .....+.+|.+.|.+++|+| ++++|++|+.||.|++|++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345688998887665 3479999999996543210 11244668999999999999 9999999999999999999765
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceec-c-
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKF-L- 390 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~-~- 390 (762)
.... ...+++..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++... +
T Consensus 115 ~~~~-----------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 115 GLVL-----------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp CCSS-----------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCcc-----------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 3211 0113457788999999999999998 699999999999999999988754 3
Q ss_pred -CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEe---e
Q 040987 391 -PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR---A 465 (762)
Q Consensus 391 -~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~ 465 (762)
..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|.. ..+..++|+|++++|+++ +
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~g~~~~ 242 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG---------TRPVHAVFVSEGKILTTGFSRM 242 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS---------SSCCEEEECSTTEEEEEEECTT
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC---------CcceEEEEcCCCcEEEEeccCC
Confidence 568889999999999999999999999999999999999888 66652 247899999999999999 7
Q ss_pred cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-eeE
Q 040987 466 ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-EFT 544 (762)
Q Consensus 466 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~ 544 (762)
.|+.|++||+.+.+........ .+ ...+.+++|+|++++|++++. .|+.|++||+.+++. ...
T Consensus 243 ~d~~i~iwd~~~~~~~~~~~~~--~~------~~~v~~~~~s~~~~~l~~~g~--------~dg~i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 243 SERQVALWDTKHLEEPLSLQEL--DT------SSGVLLPFFDPDTNIVYLCGK--------GDSSIRYFEITSEAPFLHY 306 (402)
T ss_dssp CCEEEEEEETTBCSSCSEEEEC--CC------CSSCEEEEEETTTTEEEEEET--------TCSCEEEEEECSSTTCEEE
T ss_pred CCceEEEEcCccccCCceEEec--cC------CCceeEEEEcCCCCEEEEEEc--------CCCeEEEEEecCCCcceEe
Confidence 9999999999887653222211 11 456899999999999975541 689999999998875 444
Q ss_pred EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 545 LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 545 ~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
+.. ..| ...|.+++|+|++.++++ .++.+++|++.++..
T Consensus 307 l~~---~~~-~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 307 LSM---FSS-KESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEE---ECC-SSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ecc---ccc-CCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 433 225 689999999999998875 467999999987543
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=3.9e-29 Score=265.16 Aligned_cols=301 Identities=9% Similarity=0.015 Sum_probs=237.6
Q ss_pred ecCCC--eEEEEecCCc--ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEe-----eecCCcccee
Q 040987 49 ARSSG--LCRTAEYPAV--NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-----SLEGHKAPVT 118 (762)
Q Consensus 49 ~~~~g--~i~~~~~~~~--~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~-----~l~~h~~~V~ 118 (762)
+..++ .|..+|..++ +......+...+.+ ++|+|+++++++++ ++.|++||+++++.+. .+.+|.+.|.
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTGFQPKS-VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECSSCBCC-CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCCCCceE-EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence 33444 4444555433 33332333445665 99999777777776 5899999999999887 5568999999
Q ss_pred EEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccc
Q 040987 119 TVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRE 198 (762)
Q Consensus 119 ~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (762)
+++|+|++ .++++++.|++|++||+.+++.+..+.
T Consensus 174 ~~~~~~~~-------~~~~s~~~d~~v~~~d~~~~~~~~~~~-------------------------------------- 208 (433)
T 3bws_A 174 TISIPEHN-------ELWVSQMQANAVHVFDLKTLAYKATVD-------------------------------------- 208 (433)
T ss_dssp EEEEGGGT-------EEEEEEGGGTEEEEEETTTCCEEEEEE--------------------------------------
T ss_pred EEEEcCCC-------EEEEEECCCCEEEEEECCCceEEEEEc--------------------------------------
Confidence 99999999 788999999999999999887766543
Q ss_pred cCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-EE-eCCeEEEEEccCchhhhheeeee
Q 040987 199 TTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IR-KQRKLLIWKVPDVEAERVVMRKI 276 (762)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~-~~~~i~iwd~~~~~~~~~~~~~~ 276 (762)
.|...+.+++|+|++++++ ++ .++.|++||+.+++.. ..
T Consensus 209 ----------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-----~~ 249 (433)
T 3bws_A 209 ----------------------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI-----RK 249 (433)
T ss_dssp ----------------------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----EE
T ss_pred ----------------------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-----EE
Confidence 2345677889999999885 55 5899999999987653 33
Q ss_pred eeccCcCeEEEEEcCCCcEEEEee--------cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccccee
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGD--------VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTT 348 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~--------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (762)
.. +...+.+++|+|++++|++++ .||.|++||+.+++...
T Consensus 250 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~------------------------------- 297 (433)
T 3bws_A 250 TD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID------------------------------- 297 (433)
T ss_dssp CC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-------------------------------
T ss_pred ec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe-------------------------------
Confidence 32 345699999999999999887 48899999997664322
Q ss_pred eeccccceeEEEEecCCCEE-EEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-------------
Q 040987 349 WHWHPSEVSVLIFSSDGAYL-YSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA------------- 414 (762)
Q Consensus 349 ~~~h~~~v~~~~~s~~g~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------- 414 (762)
...|...+.+++|+|+++.+ ++++.++.|++||+.+++......+...+.+++|+|+++++++++.
T Consensus 298 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g 377 (433)
T 3bws_A 298 TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG 377 (433)
T ss_dssp EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence 22455678899999999755 5668899999999999888766667788999999999999988876
Q ss_pred --CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCC
Q 040987 415 --DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLD 477 (762)
Q Consensus 415 --d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~ 477 (762)
||.|++||+.+++.+..+..+ ..+.+++|+|++++|++++. |+.|++|++..
T Consensus 378 ~~dg~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 378 LVLGKVYVIDTTTDTVKEFWEAG-----------NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSCCEEEEEETTTTEEEEEEECS-----------SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccceEEEEEECCCCcEEEEecCC-----------CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 469999999999998888763 46799999999999988875 99999999863
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=1.6e-29 Score=268.14 Aligned_cols=285 Identities=12% Similarity=0.082 Sum_probs=230.5
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceec------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
..+.+++|+|++.++++++.++.|++||+.+++... ...+...+.+++|+++++++++++.++.|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 346689999987788888888999999999988753 33567789999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
.+..+..+. ..+.+++|+|+++++++++ .++.|++||+.+++....+.. ...+.+++|
T Consensus 203 ~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~~~~~~ 261 (433)
T 3bws_A 203 YKATVDLTG----------KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----------IGLPRGLLL 261 (433)
T ss_dssp EEEEEECSS----------SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----------CSEEEEEEE
T ss_pred EEEEEcCCC----------CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----------CCCceEEEE
Confidence 988887665 6789999999999885554 789999999988765444322 345899999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE-EEEeCCCcEEEEEcc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA-VSSSYGGDFKVWICN 585 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l-~~~~~dg~i~iwd~~ 585 (762)
+|+|+++++++.....-. ..++.|++||+.+++....+ .| ...+.+++|+|+++.+ ++++.|+.|++||+.
T Consensus 262 ~~~g~~l~~~~~~~~~~~-~~dg~i~~~d~~~~~~~~~~------~~-~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQE-SGGGRLGIYSMDKEKLIDTI------GP-PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp CTTSSEEEEEEEESCTTC-SCCEEEEEEETTTTEEEEEE------EE-EECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred cCCCCEEEEEECCCCccc-cCCCeEEEEECCCCcEEeec------cC-CCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 999999998873200000 03789999999988655443 23 5578899999999755 566889999999999
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C---------------CeEEEEeCCCCeEEEEecccc
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E---------------TVITLWDPDRNVLVAVIGETL 649 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d---------------~~i~iwd~~~~~~~~~l~~~~ 649 (762)
+++....+. +...+.+++|+|+|++|++++ + |.|++||+.+++.+..+.. .
T Consensus 334 ~~~~~~~~~------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~ 400 (433)
T 3bws_A 334 EKKVQKSIP------------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-G 400 (433)
T ss_dssp TTEEEEEEE------------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-S
T ss_pred CCcEEEEec------------CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-C
Confidence 877655442 467789999999999888875 2 5999999999999988875 4
Q ss_pred CceeEEEEeCCCCEEEEEEc-CCCCeEEEEECCC
Q 040987 650 TPIMNMSFVGSSEYLVATSW-GSKPQLSVWNMSK 682 (762)
Q Consensus 650 ~~v~~~~~s~dg~~l~s~~~-d~~~~v~vwd~~~ 682 (762)
..+.+++|+|||++|++++. |+. |++|+++.
T Consensus 401 ~~~~~~~~s~dg~~l~~~~~~d~~--i~v~~~~~ 432 (433)
T 3bws_A 401 NQPTGLDVSPDNRYLVISDFLDHQ--IRVYRRDG 432 (433)
T ss_dssp SSEEEEEECTTSCEEEEEETTTTE--EEEEEETT
T ss_pred CCCceEEEcCCCCEEEEEECCCCe--EEEEEecC
Confidence 57899999999999998875 877 99999864
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.1e-32 Score=303.84 Aligned_cols=255 Identities=19% Similarity=0.231 Sum_probs=212.9
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc--cceEEeeecCCccceeEEEEeCC--CCcccceeeeEEeee
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--TGLQISSLEGHKAPVTTVIVVPA--STPATKILSYCWTAS 140 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~--~~~~~~~l~~h~~~V~~v~~s~~--~~~~~~l~~~l~s~s 140 (762)
..+.+|.+.|.+ ++|+|||++||+|+ ||.|+|||+. +++.+.++.+|.+.|++++|+|+ + .+|++|+
T Consensus 3 ~~l~gH~~~V~~-l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-------~~l~s~s 74 (753)
T 3jro_A 3 VIANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-------TILASCS 74 (753)
T ss_dssp -----CCCCEEE-ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-------SEEEEEE
T ss_pred eecccCcceeEE-EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-------CEEEEEe
Confidence 457899999998 99999999999999 7999999998 67888999999999999999998 7 6889999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.||+|++||+.+++....
T Consensus 75 ~Dg~I~vwd~~~~~~~~~-------------------------------------------------------------- 92 (753)
T 3jro_A 75 YDGKVLIWKEENGRWSQI-------------------------------------------------------------- 92 (753)
T ss_dssp TTSCEEEEEEETTEEEEE--------------------------------------------------------------
T ss_pred CCCeEEEEECCCCccccc--------------------------------------------------------------
Confidence 999999999887652211
Q ss_pred cCCccccceeeeccCCCceEEEECCC--CCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC------
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSS--GKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP------ 291 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------ 291 (762)
.....|...|.+++|+|+ ++++++ +.|+.|++||+.++... ......+|...|.+++|+|
T Consensus 93 --------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 93 --------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp --------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---CCEEEECCSSCEEEEEECCCC----
T ss_pred --------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---ceeEeecCCCceEEEEecCcccccc
Confidence 123346788999999999 999885 47899999999987432 2245568999999999999
Q ss_pred -------CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC
Q 040987 292 -------TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD 364 (762)
Q Consensus 292 -------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 364 (762)
++++|++|+.||.|++||+.++.... .....+.+|...|.+++|+|+
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~--------------------------~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------VLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEE--------------------------EEEEEECCCSSCEEEEEECCC
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccc--------------------------eeeeeecCCCCcEEEEEeccC
Confidence 58999999999999999997653211 234677889999999999999
Q ss_pred ---CCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 365 ---GAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 365 ---g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
+++|++++.||.|++||+.+++. .....+...+.+++|+|+|+++++++.||.|++|++.++.
T Consensus 216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 89999999999999999998742 2344577889999999999999999999999999998643
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-30 Score=263.02 Aligned_cols=276 Identities=8% Similarity=0.011 Sum_probs=216.9
Q ss_pred ceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEE
Q 040987 79 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLK 157 (762)
Q Consensus 79 ~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~ 157 (762)
..+.+|+++||+|+ ||.|+|||+++++.+.++. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----------~~s~s~D~~i~~w~~~~----- 104 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----------IISRGPCNRLLLLYPGN----- 104 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----------EEEECSTTEEEEEETTT-----
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----------eEEecCCCeEEEEEccC-----
Confidence 55678999999999 8999999999999988887 567888887774 56999999999999653
Q ss_pred EEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCC
Q 040987 158 TIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237 (762)
Q Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (762)
.+.+|++.+++.+......|...
T Consensus 105 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 127 (343)
T 3lrv_A 105 ---------------------------------------------------------QITILDSKTNKVLREIEVDSANE 127 (343)
T ss_dssp ---------------------------------------------------------EEEEEETTTCCEEEEEECCCSSC
T ss_pred ---------------------------------------------------------ceEEeecCCcceeEEeecCCCCC
Confidence 34567777777665666678889
Q ss_pred ceEEEECC--CCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCc
Q 040987 238 PQVITISS--SGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314 (762)
Q Consensus 238 v~~~~~sp--dg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~ 314 (762)
|.+++|+| +++++++ +.|+.|++||+.+++.. ......|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY----IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp EEEEECCC---CCEEEEEETTCCEEEEESSSSCEE----EEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE----EEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 99999999 9999985 57999999999988753 12223566689999999999999999999999999997764
Q ss_pred eeecccccccccccccccCCCCcccCCccccceeeec-cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCC
Q 040987 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW-HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPR 392 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~ 392 (762)
.. ...+.. |...|.+++|+|+|.+|++++. +.|++||+++++... +..
T Consensus 204 ~~-----------------------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 204 QA-----------------------------SSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp SC-----------------------------CEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCC
T ss_pred CC-----------------------------ccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecc
Confidence 32 145666 9999999999999999999994 599999999887642 221
Q ss_pred ---CCCCe--EEEEeCCCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC---CCCEEEE
Q 040987 393 ---IGSPL--LYFTESPDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH---DGGLVAL 463 (762)
Q Consensus 393 ---~~~~v--~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~ 463 (762)
+...+ .+++|+|+|++|++++. ++.+++|++......... ..+..++|.+ +.+.+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------------EEEEECCC----CCCCEEEE
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--------------cCceeEecCccccccceeEE
Confidence 22233 46999999999999988 999999999764322221 2446677888 8889999
Q ss_pred eecCceEEEEEcC
Q 040987 464 RAENYCIHFYSLL 476 (762)
Q Consensus 464 ~~~dg~i~i~d~~ 476 (762)
++.|+.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999887543
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=8.7e-30 Score=261.01 Aligned_cols=290 Identities=11% Similarity=0.137 Sum_probs=213.9
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEE-EEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSS-ISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~i~d 422 (762)
.++.....|...|.+++|+|||++|++++.++ +++||..+++......+. .+..+++.++++.++ +++.++.|++||
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 34456688999999999999999999988765 789999887765433332 477788888888874 566788999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC-CceeeEEeecccccCCCCcceeE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
..+++.+..+.. . ..|.+++++++. ++++ .++.|++||+.++ +.+..+.. ..
T Consensus 88 ~~~~~~~~~~~~-~----------~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-------------~~ 140 (355)
T 3vu4_A 88 DVKKQDVSRIKV-D----------APVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-------------FG 140 (355)
T ss_dssp TTTTEEEEEEEC-S----------SCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-------------EE
T ss_pred CCCCcEEEEEEC-C----------CceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-------------CC
Confidence 999999888863 2 578999998874 4443 4788999999987 55544432 24
Q ss_pred EEEEEecCCCeEEEE--eeeccccCCCceeEEEEEEecCCCceeE---------E-E-EEeecCCCCCceEEEEEcCCCC
Q 040987 502 TLVALSQDGSLMSTV--DIKLAEEGIGSLVCLKFWVSGTQNKEFT---------L-S-TIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~--~~~~~~~~~~~d~~i~iwd~~~~~~~~~---------~-~-~~~~~~h~~~~v~~~~~spd~~ 568 (762)
..+++++ .+++++ + .++.|++||+.++..... + + ...+.+| ...|++++|+|+|+
T Consensus 141 ~~~~~s~--~~la~~sg~---------~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~~~~s~~g~ 208 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEF---------NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKMVRLNRKSD 208 (355)
T ss_dssp EEEEEET--TEEEEEESS---------CTTCEEEEECCC------------------CCEEECCC-SSCEEEEEECTTSS
T ss_pred ceEEEEc--cEEEEeCCC---------cCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEEEEECCCCC
Confidence 4566777 677764 4 789999999997651100 0 0 1234789 99999999999999
Q ss_pred eEEEEeCCCc-EEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE--EEE
Q 040987 569 AAVSSSYGGD-FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL--VAV 644 (762)
Q Consensus 569 ~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~--~~~ 644 (762)
+|++++.|++ |++||+.+++....+. ...|...|++++|+|||++|++++ |++|++||+..+.. ...
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~---------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~ 279 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFR---------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHA 279 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEE---------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEE---------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccc
Confidence 9999999998 9999999887665541 012789999999999999999998 99999999976531 111
Q ss_pred ec---------------------cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 645 IG---------------------ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 645 l~---------------------~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
+. .+..+...++|++||++|++++.||. +++|++..++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~--~~~~~~~~~~~ 339 (355)
T 3vu4_A 280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM--IETFKVVFDDE 339 (355)
T ss_dssp TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE--EEEEEEEEETT
T ss_pred ccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe--EEEEEEEcCCC
Confidence 11 11223467999999999999999998 99999877554
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=294.89 Aligned_cols=261 Identities=13% Similarity=0.131 Sum_probs=216.0
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++.. .....+.+|.+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~----------------------------~~~~~l~~h~~ 54 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH----------------------------KLIDTLTGHEG 54 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE----------------------------EEEEEECCCSS
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC----------------------------ccceeccCCcC
Confidence 45679999999999999999999999999999999864321 24567889999
Q ss_pred ceeEEEEecC--CCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSSD--GAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~--g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
.|.+++|+++ +++|++++.||.|++||+.+++. .....|...|.+++|+|+ ++.+++++.||.|++||+.++.
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 9999999988 99999999999999999999862 456778899999999999 9999999999999999998763
Q ss_pred --EEEEEccCCCCCCCCCcccCceeeEEEeC-------------CCCEEEEeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 428 --IIRSISGIKLPCPLPEEYKGLCRDIAFNH-------------DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 428 --~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
....+.+|. ..|.+++|+| ++.++++++.||.|++||+.++............|
T Consensus 135 ~~~~~~~~~~~----------~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h- 203 (753)
T 3jro_A 135 TTSPIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH- 203 (753)
T ss_dssp CCCCEEEECCS----------SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-
T ss_pred CcceeEeecCC----------CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-
Confidence 333455555 7899999999 58999999999999999999886655544444444
Q ss_pred CCCCcceeEEEEEEecC---CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 493 PGDDVTVVVTLVALSQD---GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
...|.+++|+|+ +++|++++ .|+.|++||+.++............+| ...|++++|+|++++
T Consensus 204 -----~~~V~~l~~sp~~~~~~~l~s~s---------~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~ 268 (753)
T 3jro_A 204 -----SDWVRDVAWSPTVLLRSYLASVS---------QDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNV 268 (753)
T ss_dssp -----SSCEEEEEECCCCSSSEEEEEEE---------SSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCC
T ss_pred -----CCcEEEEEeccCCCCCCEEEEEe---------cCCEEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCE
Confidence 778999999999 89999999 899999999998754322222223456 889999999999999
Q ss_pred EEEEeCCCcEEEEEcccccc
Q 040987 570 AVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~ 589 (762)
+++++.||.|++||+..+..
T Consensus 269 l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 269 LALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EEEECSSSCEECCBCCSSSC
T ss_pred EEEEcCCCEEEEEecCCCCC
Confidence 99999999999999986543
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-29 Score=266.79 Aligned_cols=295 Identities=12% Similarity=0.043 Sum_probs=227.1
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCc---eec-cC--------------------------------------
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK---KKF-LP-------------------------------------- 391 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~---~~~-~~-------------------------------------- 391 (762)
.++.+++|+++|++|+++ .++.|++||+.+++ ... ..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999966655 57899999999888 321 11
Q ss_pred ----------------CCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcC--CceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 392 ----------------RIGSPLLYFTESPDPSLS-SISCADNQVHLLKMP--SMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 392 ----------------~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.+...|.+++|+|++++| ++++.|+.|++||+. +++.+..+..+. +...+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------~~~~v~~~ 155 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC--------FSKRPNAI 155 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE--------CSSCEEEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc--------CCCCceEE
Confidence 223369999999999996 888899999999999 888888876432 12688999
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC---CCeEEEEeeeccccCCCcee
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD---GSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~d~ 529 (762)
+|+|++++|++++.+|.+++|++.++............| ...|.+++|+|+ +++|++++ .|+
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~sp~~~~~~~l~s~~---------~d~ 220 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH------VSMLTDVHLIKDSDGHQFIITSD---------RDE 220 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC------SSCEEEEEEEECTTSCEEEEEEE---------TTS
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc------cCceEEEEEcCCCCCCcEEEEEc---------CCC
Confidence 999999999999999999999998776543111111222 677999999999 99999999 889
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCce-ee--------
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGW-SC-------- 600 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~-------- 600 (762)
.|++||+.++.....+ ..+| ...|.+++|+ ++++|++++.|+.|++||+.+++....+..... ..
T Consensus 221 ~i~vwd~~~~~~~~~~----~~~h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 221 HIKISHYPQCFIVDKW----LFGH-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp CEEEEEESCTTCEEEE----CCCC-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred cEEEEECCCCceeeee----ecCC-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence 9999999988776553 2578 8999999999 999999999999999999998876554420000 00
Q ss_pred -----eeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeC--CCC---eEEEEeccccCceeEEEEeCCCCEEEEE-
Q 040987 601 -----HAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDP--DRN---VLVAVIGETLTPIMNMSFVGSSEYLVAT- 667 (762)
Q Consensus 601 -----~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~--~~~---~~~~~l~~~~~~v~~~~~s~dg~~l~s~- 667 (762)
..........|.+++|+|++++|++++ |+.|++|++ .++ +.+..+.+| ..|.+++|+|++ ++++.
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~ 372 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLD 372 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEEC
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEe
Confidence 000012346789999999999999885 899999999 666 778888888 889999999964 44444
Q ss_pred Ec------CCCCeEEEEECCC
Q 040987 668 SW------GSKPQLSVWNMSK 682 (762)
Q Consensus 668 ~~------d~~~~v~vwd~~~ 682 (762)
+. +.. |.+|.+..
T Consensus 373 ~~~~~~~~~~~--i~v~~~~~ 391 (450)
T 2vdu_B 373 NKESSGVQKNF--AKFIEYNL 391 (450)
T ss_dssp CTTCCSSCCCS--EEEEEEET
T ss_pred cccCCCCCCcc--eEEEEEEc
Confidence 33 333 78887654
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=3.5e-29 Score=269.44 Aligned_cols=347 Identities=12% Similarity=0.067 Sum_probs=260.1
Q ss_pred EEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCE
Q 040987 288 AFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAY 367 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 367 (762)
+|+|++..+++++.|+.|.+||..+++.. ..+..+.. +..++|+|||++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~------------------------------~~i~~g~~-~~~v~~spdg~~ 192 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV------------------------------KVIDTGYA-VHISRMSASGRY 192 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE------------------------------EEEECSTT-EEEEEECTTSCE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE------------------------------EEEecCcc-cceEEECCCCCE
Confidence 48899999999999999999999777543 44542222 889999999999
Q ss_pred EEEEecCCeEEEEec--CCCceeccCCCCCCeEEEEeCC----CCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 368 LYSGGKEGVLVVWQL--DTGKKKFLPRIGSPLLYFTESP----DPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 368 l~s~~~dg~i~~wd~--~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
|++++.|++|.+||+ .+++..........+..++|+| ||+++++++. ++.|.+||..+++++..+..+.....
T Consensus 193 l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 193 LLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred EEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence 999999999999999 7877765445667789999999 9999999875 89999999999999988865321110
Q ss_pred CCCcc-cCceeeEEEeCCCCE-EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 441 LPEEY-KGLCRDIAFNHDGGL-VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 441 ~~~~~-~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
....| ...+..+.++|++.. +++...++.|.+||..+.+.+....... ...+.+++|+|+|+++++++.
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---------~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---------APFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---------CSSCCCEEECTTSCEEEEEEG
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---------CcCccCceECCCCCEEEEEec
Confidence 00011 136889999997665 5566678999999998876544211111 234678899999998877653
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEEe-CCCcEEEEEcccccccccccCC
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSSS-YGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
.+++|.+||..+++....+.. -..+| .+....+ ++|+ +..++++. .|++|.+||+.+.... ..
T Consensus 344 --------~~~~v~v~D~~tg~l~~~i~~-g~~ph-~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~----~~ 408 (543)
T 1nir_A 344 --------NSNKVAVIDSKDRRLSALVDV-GKTPH-PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP----QY 408 (543)
T ss_dssp --------GGTEEEEEETTTTEEEEEEEC-SSSBC-CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT----TT
T ss_pred --------CCCeEEEEECCCCeEEEeecc-CCCCC-CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc----hh
Confidence 578999999999977665542 11236 4433333 5777 66667765 5799999999873211 11
Q ss_pred ceeeeeecccCCCCeEEEEEcCCCcEEEEEc--------CCeEEEEeCCCCeEE-EEe--------ccccCceeEEEEeC
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--------ETVITLWDPDRNVLV-AVI--------GETLTPIMNMSFVG 659 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--------d~~i~iwd~~~~~~~-~~l--------~~~~~~v~~~~~s~ 659 (762)
.|.+......+...+..++|+|||++|++++ +++|.|||+++++.. ..+ ..+...+.+++|+|
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred cCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 3555556667778888999999999999986 569999999998766 443 34567799999999
Q ss_pred CCCEEEEEEc-----CCCCeEEEEECCCCceeeEEEE
Q 040987 660 SSEYLVATSW-----GSKPQLSVWNMSKLSISWSYLL 691 (762)
Q Consensus 660 dg~~l~s~~~-----d~~~~v~vwd~~~~~~~~~~~~ 691 (762)
||+.|+++.. |+. |.|||.+++++...+..
T Consensus 489 ~g~~~~~s~~~~~~~~~~--i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSA--LVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp SSSEEEEEEECCTTSCCE--EEEEETTTTEEEEEECC
T ss_pred CCCEEEEEeecCCCCCCe--EEEEECCCceEEEeecC
Confidence 9999998743 555 99999999999877663
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.2e-30 Score=267.39 Aligned_cols=277 Identities=9% Similarity=0.005 Sum_probs=184.5
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee------ccCCCCCCeEEEEeCC--------CCCeEEEEecCC
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK------FLPRIGSPLLYFTESP--------DPSLSSISCADN 416 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~------~~~~~~~~v~~~~~s~--------~~~~l~~~~~d~ 416 (762)
.|........+++++.+|++++.|++|++||.++++.. .+.+|.+.|.+++|+| |+++|++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 34444555566777889999999999999999988652 3567899999999997 889999999999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+|++||+.++..+..+.+|. ..+.+++|+|++. +|++++.|+.|++||+.+++...........+
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~----------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~---- 232 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLS----------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK---- 232 (393)
T ss_dssp EEEEEEEETTEEEEEEEECS----------SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS----
T ss_pred eEEEEECCCCceeeeecCCC----------CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc----
Confidence 99999999888877777776 7889999999874 79999999999999999876544432211110
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc-CCCCeEEEEe
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH-PNRRAAVSSS 574 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s-pd~~~l~~~~ 574 (762)
... .++++...+.. .. ...+| ...+.++.|+ ||++.|++++
T Consensus 233 --~~~----~~s~~~~~~~~----------------------------~~---~~~~~-~~~v~~v~~~~~dg~~l~s~s 274 (393)
T 4gq1_A 233 --NPW----LLTLNTLPLVN----------------------------TC---HSSGI-ASSLANVRWIGSDGSGILAMC 274 (393)
T ss_dssp --CCC----SEEEESGGGC-------------------------------------CC-SSSCSEEEEETTTTCEEEEEC
T ss_pred --cce----EEeccccccee----------------------------ee---ecccc-cccceeeeeecCCCCEEEEEe
Confidence 000 01110000000 00 01356 7788899986 7999999999
Q ss_pred CCCcEEEEEcccccccccccCCcee--------eeeecccCCCCeEEEEEcC-CCcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWS--------CHAVGSYKKKAMTAAAFSA-DGSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~s~-dg~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
.|+++++||+..+.....+...... .......+...+..+.+.+ ++.++++|+ |+.|++||+.+++++..
T Consensus 275 ~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~ 354 (393)
T 4gq1_A 275 KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI 354 (393)
T ss_dssp TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 9999999999877655443200000 0000111122222333333 444667777 99999999999998888
Q ss_pred eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 645 IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 645 l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.+|..+|.+++|+|||++||+++.|| +.+|++..
T Consensus 355 ~~~~~~~V~svafspdG~~LA~as~~G---v~lvrL~g 389 (393)
T 4gq1_A 355 PIQLGMPIVDFCWHQDGSHLAIATEGS---VLLTRLMG 389 (393)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEESSE---EEEEEEGG
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEEeC
Confidence 888999999999999999999999988 88887653
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7e-29 Score=253.63 Aligned_cols=265 Identities=8% Similarity=0.061 Sum_probs=203.1
Q ss_pred ceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc---------cceEEeeec
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS---------TGLQISSLE 111 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~---------~~~~~~~l~ 111 (762)
++.++++|+.||.|++||+.+++...... ...|.+ ++|+|+ +++++ |++|++|+.. +++.++.+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~-~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRT-GGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCT-TCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCcee-eeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 57899999999999999999876654433 567886 999998 88887 7999999654 555555554
Q ss_pred -CCccceeEEEEeC--CCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceE
Q 040987 112 -GHKAPVTTVIVVP--ASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 112 -~h~~~V~~v~~s~--~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
+|.+.|.+++|+| ++ .++++++.|++|++||+.+++++....
T Consensus 122 ~~~~~~v~~~~~~~~~~~-------~~l~s~s~dg~i~~wd~~~~~~~~~~~---------------------------- 166 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNT-------EYFIWADNRGTIGFQSYEDDSQYIVHS---------------------------- 166 (343)
T ss_dssp CCCSSCEEEEECCC---C-------CEEEEEETTCCEEEEESSSSCEEEEEC----------------------------
T ss_pred cCCCCCEEEEEcCCCCCC-------CEEEEEeCCCcEEEEECCCCcEEEEEe----------------------------
Confidence 7888999999999 99 789999999999999999887644321
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCch
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVE 267 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~ 267 (762)
..+...+.+++|+|||++||++ .|+.|++||+.+++
T Consensus 167 -------------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 167 -------------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp -------------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred -------------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 1234568899999999999965 79999999999887
Q ss_pred hhhheeeeeeec-cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccc
Q 040987 268 AERVVMRKITLH-HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLC 346 (762)
Q Consensus 268 ~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (762)
.. ...+.. |...|.+++|+|++.+|++++ ++.|++||+...+... .+
T Consensus 204 ~~----~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~---------------------------~~ 251 (343)
T 3lrv_A 204 QA----SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL---------------------------AY 251 (343)
T ss_dssp SC----CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB---------------------------SS
T ss_pred CC----ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce---------------------------ee
Confidence 42 123344 999999999999999999999 5599999997764322 11
Q ss_pred eeeeccccce--eEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCCCCeEEEEeCC---CCCeEEEEecCCcEEE
Q 040987 347 TTWHWHPSEV--SVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIGSPLLYFTESP---DPSLSSISCADNQVHL 420 (762)
Q Consensus 347 ~~~~~h~~~v--~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~i 420 (762)
..+..|...+ .+++|+|+|++|++++. |+.+++|++++....... .++..+.|++ +.+.+++++.|+.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEecCCceEE
Confidence 2222233334 36999999999999988 999999999765542221 4567788888 8899999999999888
Q ss_pred EEcC
Q 040987 421 LKMP 424 (762)
Q Consensus 421 ~d~~ 424 (762)
+-..
T Consensus 329 ~~~~ 332 (343)
T 3lrv_A 329 ILKT 332 (343)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7544
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=7.1e-29 Score=261.85 Aligned_cols=257 Identities=18% Similarity=0.250 Sum_probs=209.8
Q ss_pred eeeecCcccccCCceeecC-CCEEEEEe-CCEEEEEEccc----------ceEEeeecCCccceeEEEEeCCCCccccee
Q 040987 66 KMIRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTST----------GLQISSLEGHKAPVTTVIVVPASTPATKIL 133 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~d-g~~la~~~-~~~i~iwd~~~----------~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~ 133 (762)
....+|.+.|.+ ++|+|+ +++||+++ +|.|+|||+.+ .+.+.++.+|...|++++|+|+++
T Consensus 122 ~~~~~h~~~v~~-l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~------ 194 (430)
T 2xyi_A 122 EIKINHEGEVNR-ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN------ 194 (430)
T ss_dssp EEEEEESSCCSE-EEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST------
T ss_pred EEEEcCCCcEEE-EEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC------
Confidence 456889999998 999998 68899988 69999999987 678889999999999999999994
Q ss_pred eeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcc
Q 040987 134 SYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMN 213 (762)
Q Consensus 134 ~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 213 (762)
.+|++++.||+|++||+.++..... ....
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~------~~~~--------------------------------------------- 223 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHR------VIDA--------------------------------------------- 223 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGG------EEEC---------------------------------------------
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCc------eecc---------------------------------------------
Confidence 3889999999999999987432100 0000
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECC-CCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISS-SGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
......|...|.+++|+| ++.+++++ .++.|++||+.++... ........|...|++++|+|
T Consensus 224 --------------~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~i~~~p 287 (430)
T 2xyi_A 224 --------------KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--KPSHTVDAHTAEVNCLSFNP 287 (430)
T ss_dssp --------------SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--SCSEEEECCSSCEEEEEECS
T ss_pred --------------ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--cceeEeecCCCCeEEEEeCC
Confidence 023446788899999999 67777754 7999999999987421 12244568999999999999
Q ss_pred CCc-EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEE
Q 040987 292 TQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLY 369 (762)
Q Consensus 292 ~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~ 369 (762)
+++ ++++|+.||.|++||+.... .++..+.+|...|.+++|+|+++ +|+
T Consensus 288 ~~~~~l~tg~~dg~v~vwd~~~~~-----------------------------~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 288 YSEFILATGSADKTVALWDLRNLK-----------------------------LKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTT-----------------------------SCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCC-----------------------------CCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 987 68899999999999997532 23567888999999999999985 699
Q ss_pred EEecCCeEEEEecCCC--------------ce-eccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCC
Q 040987 370 SGGKEGVLVVWQLDTG--------------KK-KFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPS 425 (762)
Q Consensus 370 s~~~dg~i~~wd~~~~--------------~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~ 425 (762)
+++.|+.|++||+... +. .....|...|.+++|+|+++ ++++++.|+.|++|++..
T Consensus 339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 9999999999999872 22 23456778899999999999 899999999999999975
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2e-28 Score=236.68 Aligned_cols=287 Identities=14% Similarity=0.044 Sum_probs=203.1
Q ss_pred EEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccc
Q 040987 250 FGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMN 329 (762)
Q Consensus 250 la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 329 (762)
++++....|++|+..++..- ........|+.+|..+.+.||..-|+.. .+=++
T Consensus 57 ~~~~~~~~v~lw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~------------------- 109 (356)
T 2w18_A 57 IITACEDVVSLWKALDAWQW--EKLYTWHFAEVPVLQIVPVPDVYNLVCV------ALGNL------------------- 109 (356)
T ss_dssp EEEEESSEEEEEEESSSSBE--EEEEEEECCSSCEEEECCCTTCCSCEEE------EECSS-------------------
T ss_pred EEEeccceEEEcccCCCccc--eeeEEEeccCceeEEEEEcCcccceeee------eeccc-------------------
Confidence 45678899999999987322 3346777899999999999986544432 11112
Q ss_pred cccCCCCcccCCccccceeeeccccceeEEEEecC----CCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC
Q 040987 330 NEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD----GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405 (762)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~ 405 (762)
+...|..++|+|| ++.+++++. .+.+|++. +
T Consensus 110 ----------------------~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~---------------------~ 144 (356)
T 2w18_A 110 ----------------------EIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLT---------------------K 144 (356)
T ss_dssp ----------------------SEEEEEEECC------CCEEEEEEEE--EEEEEEET---------------------T
T ss_pred ----------------------cccceEEEEECCCccccccEEEeCCC--eEEEEecC---------------------C
Confidence 4456899999999 999999875 47778653 3
Q ss_pred CCeEEEEe--cCCcEEEEEc-CCceEEEEEccCCCCCCCCCcccCceeeEEEeC---CCCEEEEeecCceEEEEEcCCCC
Q 040987 406 PSLSSISC--ADNQVHLLKM-PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH---DGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 406 ~~~l~~~~--~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
++++.++. .|+.|++|++ .+++.+..+.+|. ..+..++|++ ++.+|++++.|++|++||+.+++
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~----------~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP----------PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC----------CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred CcEEEecccCCCCcEEEEEECCCCceeeeeccCC----------CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence 44444432 4788888888 4477777777776 5678889998 78999999999999999999999
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~ 559 (762)
.+..+..... +...+.+++|+|+|+++++++. + . .+
T Consensus 215 ~l~tL~g~~~-------~v~~v~~vafSpdG~~lvs~s~---------~------------------------~---~~- 250 (356)
T 2w18_A 215 LLKKMHIDDS-------YQASVCHKAYSEMGLLFIVLSH---------P------------------------C---AK- 250 (356)
T ss_dssp EEEEEECCC----------CCCEEEEEEETTEEEEEEC------------------------------------------
T ss_pred EEEEEcCCCc-------ceeeeEEEEECCCCCEEEEecc---------C------------------------C---Cc-
Confidence 8887753110 1345788899999999888761 0 0 00
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 560 AVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 560 ~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
..+++|+.|++|++||..+++....+. .....+|...+.+..+ ++.++|+++ |++|+|||+.+
T Consensus 251 --------w~laSGs~D~tIklWd~~tgk~l~v~~------~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~t 314 (356)
T 2w18_A 251 --------ESESLRSPVFQLIVINPKTTLSVGVML------YCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLL 314 (356)
T ss_dssp ---------------CCEEEEEEETTTTEEEEEEE------ECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred --------ceeeccCCCcEEEEEECCCCEEEEEEE------eeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCC
Confidence 146788888899999988877654320 0001234444444444 488999998 99999999999
Q ss_pred CeEEEEeccccCcee-EEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 639 NVLVAVIGETLTPIM-NMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 639 ~~~~~~l~~~~~~v~-~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
++++.++.+|...+. .++|||||++|++++.|++ |+|||+
T Consensus 315 Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T--IklWd~ 355 (356)
T 2w18_A 315 GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN--IFVYHY 355 (356)
T ss_dssp CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC--EEEEEE
T ss_pred CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc--EEEecC
Confidence 999999999987755 5899999999999999999 999985
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.1e-27 Score=257.71 Aligned_cols=336 Identities=12% Similarity=0.086 Sum_probs=250.8
Q ss_pred ceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeC--CCcce
Q 040987 79 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDF--SVPEL 155 (762)
Q Consensus 79 ~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~--~~~~~ 155 (762)
.+|+|++++++++. +++|.+||..+++++.++..+.. +.+++|+||| ++|++++.|++|++||+ .++++
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg-------~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG-------RYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS-------CEEEEEETTSEEEEEETTSSSCEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC-------CEEEEECCCCeEEEEECcCCCCcE
Confidence 56999999888888 69999999999999999984333 8999999999 78899999999999999 77777
Q ss_pred EEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccC
Q 040987 156 LKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEM 235 (762)
Q Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (762)
+.++.. .
T Consensus 215 ~~~i~~-------------------------------------------------------------------------g 221 (543)
T 1nir_A 215 VAEIKI-------------------------------------------------------------------------G 221 (543)
T ss_dssp EEEEEC-------------------------------------------------------------------------C
T ss_pred EEEEec-------------------------------------------------------------------------C
Confidence 665542 2
Q ss_pred CCceEEEECC----CCCEEEEE--eCCeEEEEEccCchhhhheeeeeeec----------c-CcCeEEEEEcCCCc-EEE
Q 040987 236 KEPQVITISS----SGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLH----------H-TKKLTVLAFHPTQR-IVA 297 (762)
Q Consensus 236 ~~v~~~~~sp----dg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~----------~-~~~v~~~~~sp~~~-~l~ 297 (762)
..+..++|+| ||++|+++ .++.|.+||..+++.. ..... | ...+.++.++|+++ +++
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~-----~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-----QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-----EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc-----eeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 2356789999 99999865 4899999999988754 22221 2 23789999999766 555
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCe
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGV 376 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~ 376 (762)
+...++.|.+||..+.+.+. +..+ .+...+..+.|+|+|+++++++ .+++
T Consensus 297 s~~~~g~i~vvd~~~~~~l~----------------------------~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLT----------------------------VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp EETTTTEEEEEECTTSSSCE----------------------------EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred EECCCCeEEEEEecCCCcce----------------------------eEEe-ccCcCccCceECCCCCEEEEEecCCCe
Confidence 66778999999987653221 1122 2455678899999999877655 5789
Q ss_pred EEEEecCCCceeccCC-----CCCCeEEEEeCCC-CCeEEEEe-cCCcEEEEEcCC-------ceEEEEEccCCCCCCCC
Q 040987 377 LVVWQLDTGKKKFLPR-----IGSPLLYFTESPD-PSLSSISC-ADNQVHLLKMPS-------MEIIRSISGIKLPCPLP 442 (762)
Q Consensus 377 i~~wd~~~~~~~~~~~-----~~~~v~~~~~s~~-~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~ 442 (762)
|.+||..+++...... |......+ ++|+ +..++++. .+++|.+||..+ +++++++.++.
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g------ 420 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG------ 420 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC------
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC------
Confidence 9999999998754222 33333333 4677 55555554 579999999998 89999998876
Q ss_pred CcccCceeeEEEeCCCCEEEEee-------cCceEEEEEcCCCCceeeE-EeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRA-------ENYCIHFYSLLDDRGISEV-QVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
+.+..++++|++++|++++ .+++|.+||+.+++...+. .... ......+...+..++|+|+|+.++
T Consensus 421 ----~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 421 ----GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE--WADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp ----SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH--HHCCCSSCCEEEEEEECSSSSEEE
T ss_pred ----CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh--hcccCCCCCceEeccCCCCCCEEE
Confidence 5668899999999999987 2679999999998876332 2110 000011156799999999999999
Q ss_pred EEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
++... +...++.|.+||..+++....++
T Consensus 495 ~s~~~----~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 495 FSVWN----GKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEC----CTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEeec----CCCCCCeEEEEECCCceEEEeec
Confidence 87420 11146899999999998776653
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=7.4e-29 Score=261.74 Aligned_cols=251 Identities=15% Similarity=0.211 Sum_probs=206.6
Q ss_pred ccCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCC----------ceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 389 FLPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPS----------MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
....|...|.+++|+|+ +.++++++.+|.|++|++.+ ......+.+|. ..+.+++|+|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~l~~~~~ 192 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ----------KEGYGLSWNPN 192 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS----------SCCCCEEECTT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC----------CCeEEEEeCCC
Confidence 34567889999999997 68899999999999999986 56667777776 78899999999
Q ss_pred CC-EEEEeecCceEEEEEcCCCCceeeE---EeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEE
Q 040987 458 GG-LVALRAENYCIHFYSLLDDRGISEV---QVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 458 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
+. +|++++.||.|++||+..+...... ...... |...|.+++|+| ++.+|++++ .++.|+
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------h~~~v~~v~~~p~~~~~l~s~~---------~dg~i~ 257 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG------HTAVVEDVAWHLLHESLFGSVA---------DDQKLM 257 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC------CSSCEEEEEECSSCTTEEEEEE---------TTSEEE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC------CCCCEeeeEEeCCCCCEEEEEe---------CCCeEE
Confidence 88 9999999999999999875432111 111112 267799999999 677888888 899999
Q ss_pred EEEecCCC---ceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccc-cccccCCceeeeeecccC
Q 040987 533 FWVSGTQN---KEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQ-QKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 533 iwd~~~~~---~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 607 (762)
+||+++.. ....+ .+| ...|++++|+|+++ ++++++.||.|++||+++... ... ...|
T Consensus 258 i~d~~~~~~~~~~~~~-----~~~-~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~-----------~~~h 320 (430)
T 2xyi_A 258 IWDTRNNNTSKPSHTV-----DAH-TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS-----------FESH 320 (430)
T ss_dssp EEETTCSCSSSCSEEE-----ECC-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE-----------EECC
T ss_pred EEECCCCCCCcceeEe-----ecC-CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE-----------eecC
Confidence 99999873 33333 467 88999999999987 688999999999999987432 222 3357
Q ss_pred CCCeEEEEEcCCCc-EEEEEc-CCeEEEEeCCC--------------CeEEEEeccccCceeEEEEeCCCC-EEEEEEcC
Q 040987 608 KKAMTAAAFSADGS-VLAVAA-ETVITLWDPDR--------------NVLVAVIGETLTPIMNMSFVGSSE-YLVATSWG 670 (762)
Q Consensus 608 ~~~i~~~~~s~dg~-~la~~~-d~~i~iwd~~~--------------~~~~~~l~~~~~~v~~~~~s~dg~-~l~s~~~d 670 (762)
...|++++|+|+++ +|++++ |+.|+|||+.. .+++..+.+|...|.+++|+|+++ +|++++.|
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence 89999999999995 678887 99999999987 367778889999999999999999 89999999
Q ss_pred CCCeEEEEECCCC
Q 040987 671 SKPQLSVWNMSKL 683 (762)
Q Consensus 671 ~~~~v~vwd~~~~ 683 (762)
+. |++|++.++
T Consensus 401 g~--i~iw~~~~~ 411 (430)
T 2xyi_A 401 NI--MQVWQMAEN 411 (430)
T ss_dssp SE--EEEEEECHH
T ss_pred CC--EEEeEcccc
Confidence 98 999999764
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.2e-28 Score=238.28 Aligned_cols=268 Identities=12% Similarity=0.112 Sum_probs=184.4
Q ss_pred EEEEEeCCEEEEEEcccc---eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc
Q 040987 87 RLLVCTSNTVSIFSTSTG---LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF 163 (762)
Q Consensus 87 ~la~~~~~~i~iwd~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~ 163 (762)
-+++++...|++|+..++ +.++++++|+.+|..+.|+||.. .++..+=..-.+ .
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~-----------------~ 112 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVY------NLVCVALGNLEI-----------------R 112 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCC------SCEEEEECSSSE-----------------E
T ss_pred EEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCccc------ceeeeeeccccc-----------------c
Confidence 577888999999999999 89999999999999999999884 222222111100 1
Q ss_pred ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEE
Q 040987 164 SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243 (762)
Q Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 243 (762)
.+.+++| +++++...... ++++ ..+.+|++.
T Consensus 113 ~v~sla~--------spd~~~~~~~l------------------~s~g--~~~~v~~l~--------------------- 143 (356)
T 2w18_A 113 EIRALFC--------SSDDESEKQVL------------------LKSG--NIKAVLGLT--------------------- 143 (356)
T ss_dssp EEEEECC--------------CCEEE------------------EEEE--EEEEEEEET---------------------
T ss_pred ceEEEEE--------CCCccccccEE------------------EeCC--CeEEEEecC---------------------
Confidence 2223322 22221111111 1111 234555443
Q ss_pred CCCCCEEEEEe---CCeEEEEEccC-chhhhheeeeeeeccCcCeEEEEEcC---CCcEEEEeecCCeEEEEeccCCcee
Q 040987 244 SSSGKYFGIRK---QRKLLIWKVPD-VEAERVVMRKITLHHTKKLTVLAFHP---TQRIVAAGDVTGRILIWRGFGDRTF 316 (762)
Q Consensus 244 spdg~~la~~~---~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~dg~v~vw~~~~~~~~ 316 (762)
+|+++.++. ++.|++|++.. ++.. .....|...+..++|+| ++.+|++++.|++|+|||+.+++.+
T Consensus 144 --~g~lv~ss~~g~d~~V~~~~~s~dG~~~-----~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l 216 (356)
T 2w18_A 144 --KRRLVSSSGTLSDQQVEVMTFAEDGGGK-----ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL 216 (356)
T ss_dssp --TTEEEEEESSSTTCEEEEEEECTTSCEE-----EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE
T ss_pred --CCcEEEecccCCCCcEEEEEECCCCcee-----eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE
Confidence 444444432 66666666633 3322 34557888999999999 7799999999999999999887543
Q ss_pred ecccccccccccccccCCCCcccCCccccceeeeccc---cceeEEEEecCCCEE------------EEEecCCeEEEEe
Q 040987 317 ATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP---SEVSVLIFSSDGAYL------------YSGGKEGVLVVWQ 381 (762)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~s~~g~~l------------~s~~~dg~i~~wd 381 (762)
+++.+|. ..+.+++|+|+|+++ ++|+.|++|++||
T Consensus 217 ------------------------------~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 217 ------------------------------KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp ------------------------------EEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred ------------------------------EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence 4565543 467788999999876 5678899999999
Q ss_pred cCCCceecc------CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCce-eeEEE
Q 040987 382 LDTGKKKFL------PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC-RDIAF 454 (762)
Q Consensus 382 ~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~ 454 (762)
..+++.... .++...+.+..+ ++.++++++.|++|+|||+.+++++.++.+|. ..+ ..++|
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~----------~~vvs~vaf 334 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVS----------DQHWSFVKW 334 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC------------CCCCEEEE
T ss_pred CCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCC----------CCeEEEEEE
Confidence 999987432 233334443333 37789999999999999999999999999886 343 45899
Q ss_pred eCCCCEEEEeecCceEEEEEc
Q 040987 455 NHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 455 s~~~~~l~~~~~dg~i~i~d~ 475 (762)
+|||++|++|+.|++|++||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999995
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=5.6e-27 Score=266.62 Aligned_cols=365 Identities=11% Similarity=0.016 Sum_probs=247.9
Q ss_pred CcCeEEEEEcCCCcEEEEeec-CC-----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 281 TKKLTVLAFHPTQRIVAAGDV-TG-----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~-dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
...+.+++|||||++|++++. |+ .|++||+.+++........... +....... ..........+. ...
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~-~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLSD-EEKARRERQRIA-AMT 109 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------------CCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----cccccccc-hhhhhhhhhhhc-ccc
Confidence 457999999999999999988 88 8999999887643321110000 00000000 000000000000 013
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCC---ceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG---KKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.+.+++|+|||++|++++. +.|++||+.++ +...+..+...+..++|||||++|++++ ++.|++||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 4788999999999999886 89999999998 6677777788899999999999999886 56999999998877655
Q ss_pred EccCCCCCCC--C----CcccCceeeEEEeCCCCEEEEeecCc---------------------------------eEEE
Q 040987 432 ISGIKLPCPL--P----EEYKGLCRDIAFNHDGGLVALRAENY---------------------------------CIHF 472 (762)
Q Consensus 432 ~~~~~~~~~~--~----~~~~~~v~~~~~s~~~~~l~~~~~dg---------------------------------~i~i 472 (762)
...+...... . ......+..++|+|||++|++++.|+ .|++
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 4433210000 0 00001247899999999999987765 7889
Q ss_pred EEcCC-CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 473 YSLLD-DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 473 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
||+.+ ++.... ... . .+...+..++| |||++|+++..+ ....+..|++||+.+++....+..
T Consensus 268 ~d~~~~~~~~~~-~~~-~------~~~~~~~~~~~-pDg~~l~~~~~~----~~~~~~~i~~~d~~~g~~~~~~~~---- 330 (741)
T 2ecf_A 268 ISPAEQAQTQWI-DLG-K------EQDIYLARVNW-RDPQHLSFQRQS----RDQKKLDLVEVTLASNQQRVLAHE---- 330 (741)
T ss_dssp ECSSTTCCCEEE-CCC-S------CSSEEEEEEEE-EETTEEEEEEEE----TTSSEEEEEEEETTTCCEEEEEEE----
T ss_pred EECCCCCceEEe-cCC-C------CcceEEEEEEe-CCCCEEEEEEec----ccCCeEEEEEEECCCCceEEEEEc----
Confidence 99987 654321 110 0 12677999999 999999987631 112468999999998876554432
Q ss_pred CCCCC---ceEEEEEcCCCCeEEEEeCCCcEEEEEccc-ccccccccCCceeeeeecccCCCCeEEE-EEcCCCcEEEEE
Q 040987 552 PHRDA---GISAVAFHPNRRAAVSSSYGGDFKVWICND-ELQQKDLQSSGWSCHAVGSYKKKAMTAA-AFSADGSVLAVA 626 (762)
Q Consensus 552 ~h~~~---~v~~~~~spd~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~dg~~la~~ 626 (762)
+... .+..++|+|||+++++++.||.++||.+.. +. ...+ ..+...+..+ .|+|||+.|+..
T Consensus 331 -~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-----------~~~~~~v~~~~~~s~dg~~l~~~ 397 (741)
T 2ecf_A 331 -TSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-----------THGNWSVDELLAVDEKAGLAYFR 397 (741)
T ss_dssp -ECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-----------CCSSSCEEEEEEEETTTTEEEEE
T ss_pred -CCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-----------eecceEEEeEeEEeCCCCEEEEE
Confidence 2012 456899999999999999999888887752 22 2222 2356677777 599999987654
Q ss_pred -c-CC--eEEEEeCCC-CeEEEEeccccCceeEEEEeCCCCEEEEEEcCC--CCeEEEEECCCCc
Q 040987 627 -A-ET--VITLWDPDR-NVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS--KPQLSVWNMSKLS 684 (762)
Q Consensus 627 -~-d~--~i~iwd~~~-~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~--~~~v~vwd~~~~~ 684 (762)
+ ++ .++||++.. ++....+.. ...+..++|||||++|+....+- ...+.+|+...+.
T Consensus 398 ~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 398 AGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp ECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred EeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 4 55 899999864 555666765 56688999999999998875442 1248999886543
No 131
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.1e-28 Score=253.30 Aligned_cols=257 Identities=10% Similarity=-0.015 Sum_probs=176.3
Q ss_pred eccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--------CCcEEEEeecC
Q 040987 232 LAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--------TQRIVAAGDVT 302 (762)
Q Consensus 232 ~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--------~~~~l~~~~~d 302 (762)
..|........+++++++||++ .|++|+|||..+++.........+.+|.+.|++++|+| |+++||+++.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3455566667778888888854 79999999999887643334455679999999999998 88999999999
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEe
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd 381 (762)
++|+|||+.++. ++..+.+|...|.+++|+|++ ++|++++.|++|++||
T Consensus 166 ~tv~~Wd~~~~~------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd 215 (393)
T 4gq1_A 166 CTLIIWRLTDEG------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215 (393)
T ss_dssp SEEEEEEEETTE------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CeEEEEECCCCc------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEE
Confidence 999999987653 235667788999999999987 4799999999999999
Q ss_pred cCCCceec--------------------------cCCCCCCeEEEEeC-CCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 382 LDTGKKKF--------------------------LPRIGSPLLYFTES-PDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 382 ~~~~~~~~--------------------------~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+.+++... ...+...+.++.|+ +|++.+++++.|+.+++||+..++....+..
T Consensus 216 ~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~ 295 (393)
T 4gq1_A 216 WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD 295 (393)
T ss_dssp TTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------
T ss_pred CCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee
Confidence 98875421 12345567788875 8999999999999999999998777666655
Q ss_pred CCCCCCCCCc--------ccCceeeEEEeC--CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 435 IKLPCPLPEE--------YKGLCRDIAFNH--DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 435 ~~~~~~~~~~--------~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
+......... .........++| ++.++++++.||.|++||+.+++........ ...|.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~----------~~~V~sv 365 (393)
T 4gq1_A 296 STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL----------GMPIVDF 365 (393)
T ss_dssp --------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC----------SSCEEEE
T ss_pred ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC----------CCcEEEE
Confidence 5432211000 011222334444 4446777889999999999988776654332 5679999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
+|+|||++||+++ .+ .+.+|.+..
T Consensus 366 afspdG~~LA~as---------~~-Gv~lvrL~g 389 (393)
T 4gq1_A 366 CWHQDGSHLAIAT---------EG-SVLLTRLMG 389 (393)
T ss_dssp EECTTSSEEEEEE---------SS-EEEEEEEGG
T ss_pred EEcCCCCEEEEEe---------CC-CeEEEEEeC
Confidence 9999999999997 44 566776643
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=9.3e-27 Score=243.39 Aligned_cols=286 Identities=10% Similarity=0.083 Sum_probs=224.7
Q ss_pred eeEEEEec----CCC----eEEEEec--CCccee---eeecCcccccCCceeec--------------CCCEEEEEe-C-
Q 040987 43 SFIFAVAR----SSG----LCRTAEY--PAVNSK---MIRGGRSYVSSPPAFSN--------------DVKRLLVCT-S- 93 (762)
Q Consensus 43 ~~~~a~~~----~~g----~i~~~~~--~~~~~~---~~~~h~~~v~~~~~~s~--------------dg~~la~~~-~- 93 (762)
..++++|+ .+| .|++||+ .+++.+ .+.+|...+.. +++++ .+..||+++ +
T Consensus 75 ~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~ 153 (415)
T 2hqs_A 75 IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRY-AGHTASDEVFEKLTGIKGAFRTRIAYVVQTN 153 (415)
T ss_dssp CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHH-HHHHHHHHHHHHHHSSCCCTTCEEEEEEECS
T ss_pred CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHH-HHHHHHHHHHHHHcCCCCcCCCEEEEEEecC
Confidence 44677775 568 8999999 776643 47899999886 88875 266677666 4
Q ss_pred -----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC---eEEEEeCCCcceEEEEEeccce
Q 040987 94 -----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG---TIKYWDFSVPELLKTIDVKFSI 165 (762)
Q Consensus 94 -----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~---~i~vWd~~~~~~~~~~~~~~~v 165 (762)
+.|++||++ +..++.+.+|...|.+++|+||| ++|++++.|+ +|++||+.++++.. +
T Consensus 154 ~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg-------~~la~~s~~~~~~~i~~~d~~tg~~~~-l------ 218 (415)
T 2hqs_A 154 GGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG-------SKLAYVTFESGRSALVIQTLANGAVRQ-V------ 218 (415)
T ss_dssp SSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS-------SEEEEEECTTSSCEEEEEETTTCCEEE-E------
T ss_pred CCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC-------CEEEEEEecCCCcEEEEEECCCCcEEE-e------
Confidence 699999996 55577888899999999999999 6788888775 89999998876532 1
Q ss_pred EEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC
Q 040987 166 FSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS 245 (762)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 245 (762)
..+...+.+++|+|
T Consensus 219 ------------------------------------------------------------------~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 219 ------------------------------------------------------------------ASFPRHNGAPAFSP 232 (415)
T ss_dssp ------------------------------------------------------------------ECCSSCEEEEEECT
T ss_pred ------------------------------------------------------------------ecCCCcccCEEEcC
Confidence 12345677899999
Q ss_pred CCCEEE-EEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec-CC--eEEEEeccCCceeec
Q 040987 246 SGKYFG-IRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV-TG--RILIWRGFGDRTFAT 318 (762)
Q Consensus 246 dg~~la-~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg--~v~vw~~~~~~~~~~ 318 (762)
||++|+ ++. +..|++||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|++||+.+++.
T Consensus 233 dg~~la~~~~~~g~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~--- 303 (415)
T 2hqs_A 233 DGSKLAFALSKTGSLNLYVMDLASGQI------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--- 303 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCE------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---
T ss_pred CCCEEEEEEecCCCceEEEEECCCCCE------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---
Confidence 999988 442 35699999988764 345577889999999999999998876 44 677778866532
Q ss_pred ccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC---CeEEEEecCCCceeccCCCCC
Q 040987 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGS 395 (762)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~ 395 (762)
..+..|...+.+++|+|||++|++++.+ ..|++||+.+++...+..+.
T Consensus 304 ----------------------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~- 354 (415)
T 2hqs_A 304 ----------------------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF- 354 (415)
T ss_dssp ----------------------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-
T ss_pred ----------------------------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-
Confidence 2344466678899999999999988764 58999999999887666554
Q ss_pred CeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 396 PLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.+.+++|+|||++|++++.++ .|++||+. +.....+..+. +.|.+++|+|...
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~----------~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD----------GQVKFPAWSPYLH 410 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSS----------SEEEEEEECCCCC
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCC----------CCCcCCccccccc
Confidence 899999999999999988776 79999987 55566777766 7899999999654
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=6.5e-27 Score=266.03 Aligned_cols=325 Identities=10% Similarity=0.060 Sum_probs=234.9
Q ss_pred cccccCCceeecCCCEEEEEe--CC-----EEEEEEcccceEEeeecCCcc------------------------ceeEE
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT--SN-----TVSIFSTSTGLQISSLEGHKA------------------------PVTTV 120 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~--~~-----~i~iwd~~~~~~~~~l~~h~~------------------------~V~~v 120 (762)
...+.. ++|||||++||+++ ++ .|.+||+++++....+..|.. .|.++
T Consensus 36 ~~~~~~-~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMK-PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEE-EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCC-ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 345776 99999999999988 46 899999999988777765543 38999
Q ss_pred EEeCCCCcccceeeeEEeeecCCeEEEEeCCCc---ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeecc
Q 040987 121 IVVPASTPATKILSYCWTASLDGTIKYWDFSVP---ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTR 197 (762)
Q Consensus 121 ~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (762)
+||||| ++|++++. ++|.+||+.++ +..
T Consensus 115 ~~SpDg-------~~l~~~~~-~~i~~~d~~~~~~~~~~----------------------------------------- 145 (741)
T 2ecf_A 115 QWSPDA-------QRLLFPLG-GELYLYDLKQEGKAAVR----------------------------------------- 145 (741)
T ss_dssp EECTTS-------SEEEEEET-TEEEEEESSSCSTTSCC-----------------------------------------
T ss_pred EECCCC-------CEEEEEeC-CcEEEEECCCCCcceEE-----------------------------------------
Confidence 999999 57777775 89999998876 321
Q ss_pred ccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeee
Q 040987 198 ETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKIT 277 (762)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~ 277 (762)
.+..+...+..++|||||++||.+.++.|++||+.+++.. ...
T Consensus 146 --------------------------------~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~-----~~~ 188 (741)
T 2ecf_A 146 --------------------------------QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQM-----QLT 188 (741)
T ss_dssp --------------------------------BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEE-----ECC
T ss_pred --------------------------------EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEE-----Eec
Confidence 1223455678899999999999888899999999987643 333
Q ss_pred eccCcC----------------eEEEEEcCCCcEEEEeecCC---------------------------------eEEEE
Q 040987 278 LHHTKK----------------LTVLAFHPTQRIVAAGDVTG---------------------------------RILIW 308 (762)
Q Consensus 278 ~~~~~~----------------v~~~~~sp~~~~l~~~~~dg---------------------------------~v~vw 308 (762)
..+... +.+++|||||++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 333322 47899999999999987765 67778
Q ss_pred eccC-CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-----CCeEEEEec
Q 040987 309 RGFG-DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-----EGVLVVWQL 382 (762)
Q Consensus 309 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-----dg~i~~wd~ 382 (762)
|+.+ ++... +.....|...+..++| |||++|++++. +..|++||+
T Consensus 269 d~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 269 SPAEQAQTQW----------------------------IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp CSSTTCCCEE----------------------------ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred ECCCCCceEE----------------------------ecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence 8765 53221 0011146778999999 99999997654 568999999
Q ss_pred CCCceeccCCC-CC----CeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEccCCCCCCCCCcccCceeeE-EEe
Q 040987 383 DTGKKKFLPRI-GS----PLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISGIKLPCPLPEEYKGLCRDI-AFN 455 (762)
Q Consensus 383 ~~~~~~~~~~~-~~----~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s 455 (762)
.+++...+... .. .+..++|+|||++++++..++.+++|.++ .++ ...+..+. ..+..+ .|+
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~----------~~v~~~~~~s 388 (741)
T 2ecf_A 320 ASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN----------WSVDELLAVD 388 (741)
T ss_dssp TTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS----------SCEEEEEEEE
T ss_pred CCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc----------eEEEeEeEEe
Confidence 99887543322 11 34678999999988888888887887765 344 66666554 566676 599
Q ss_pred CCCCEEEEee-cCc--eEEEEEcCC-CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 456 HDGGLVALRA-ENY--CIHFYSLLD-DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 456 ~~~~~l~~~~-~dg--~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
|+++.|++.+ .++ .+++|++.. +.....+.. ...+..++|+|||++|+...... ..-..+
T Consensus 389 ~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-----------~~~~~~~~~spdg~~l~~~~~~~-----~~p~~~ 452 (741)
T 2ecf_A 389 EKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-----------APGMHSASFARNASVYVDSWSNN-----STPPQI 452 (741)
T ss_dssp TTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-----------SCSEEEEEECTTSSEEEEEEEET-----TEEEEE
T ss_pred CCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-----------CCCceEEEECCCCCEEEEEecCC-----CCCCeE
Confidence 9999876554 444 889998864 333333321 23467999999999998875310 022578
Q ss_pred EEEEecCC
Q 040987 532 KFWVSGTQ 539 (762)
Q Consensus 532 ~iwd~~~~ 539 (762)
.+|+....
T Consensus 453 ~l~~~~~~ 460 (741)
T 2ecf_A 453 ELFRANGE 460 (741)
T ss_dssp EEEETTSC
T ss_pred EEEEcCCC
Confidence 88887543
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=7.5e-27 Score=244.09 Aligned_cols=240 Identities=17% Similarity=0.120 Sum_probs=187.2
Q ss_pred CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCC---eEEEEeccCCceeeccccccccccccccc
Q 040987 256 RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG---RILIWRGFGDRTFATNDNKMNLNLMNNEE 332 (762)
Q Consensus 256 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 332 (762)
+.|++||+..... ..+..|...+.+++|+|||++|++++.++ .|++||+.+++.
T Consensus 159 ~~i~i~d~~g~~~------~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----------------- 215 (415)
T 2hqs_A 159 YELRVSDYDGYNQ------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------- 215 (415)
T ss_dssp EEEEEEETTSCSC------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----------------
T ss_pred ceEEEEcCCCCCC------EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----------------
Confidence 7999999986443 45667889999999999999999998875 999999977642
Q ss_pred CCCCcccCCccccceeeeccccceeEEEEecCCCEEE-EEecCC--eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeE
Q 040987 333 ERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLY-SGGKEG--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLS 409 (762)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (762)
..+..|...+.+++|+|||++|+ +++.++ .|++||+.+++...+..+...+.+++|+|||++|
T Consensus 216 --------------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l 281 (415)
T 2hqs_A 216 --------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNL 281 (415)
T ss_dssp --------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEE
T ss_pred --------------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEE
Confidence 34556778899999999999888 555554 5999999999888788888899999999999999
Q ss_pred EEEecC-C--cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCCCCceee
Q 040987 410 SISCAD-N--QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLDDRGISE 483 (762)
Q Consensus 410 ~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~ 483 (762)
++++.+ + .|++||+.+++.. .+..+. ..+..++|+|||++|++++.+ ..|++||+.+++.. .
T Consensus 282 ~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~----------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~ 349 (415)
T 2hqs_A 282 AFTSDQAGRPQVYKVNINGGAPQ-RITWEG----------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V 349 (415)
T ss_dssp EEEECTTSSCEEEEEETTSSCCE-ECCCSS----------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-E
T ss_pred EEEECCCCCcEEEEEECCCCCEE-EEecCC----------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-E
Confidence 988763 4 6888899887643 333333 577899999999999988864 68999999887542 1
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
+. . ...+.+++|+|||++|++++.+ +....|++||+.++. ...+ .+| .+.|.+++|
T Consensus 350 l~----~-------~~~~~~~~~spdg~~l~~~s~~------~~~~~l~~~d~~g~~-~~~l-----~~~-~~~v~~~~~ 405 (415)
T 2hqs_A 350 LS----S-------TFLDETPSLAPNGTMVIYSSSQ------GMGSVLNLVSTDGRF-KARL-----PAT-DGQVKFPAW 405 (415)
T ss_dssp CC----C-------SSSCEEEEECTTSSEEEEEEEE------TTEEEEEEEETTSCC-EEEC-----CCS-SSEEEEEEE
T ss_pred ec----C-------CCCcCCeEEcCCCCEEEEEEcC------CCccEEEEEECCCCc-EEEe-----eCC-CCCCcCCcc
Confidence 11 1 1257899999999999988731 012389999987543 3333 567 889999999
Q ss_pred cCCCC
Q 040987 564 HPNRR 568 (762)
Q Consensus 564 spd~~ 568 (762)
+|.-.
T Consensus 406 ~~~~~ 410 (415)
T 2hqs_A 406 SPYLH 410 (415)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 99643
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=5.8e-27 Score=265.77 Aligned_cols=350 Identities=11% Similarity=0.033 Sum_probs=240.7
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCcc---ceeEEEEeCCCCcccceeeeEEeeecC--------
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKA---PVTTVIVVPASTPATKILSYCWTASLD-------- 142 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~---~V~~v~~s~~~~~~~~l~~~l~s~s~d-------- 142 (762)
.+.+ ++|||||++++++.++.|++||+++++....+.+|.. .|.+++||||| ++|++++.+
T Consensus 18 ~~~~-~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg-------~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 18 HDPE-AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-------EYALFSYNVEPIYQHSY 89 (723)
T ss_dssp CCCC-CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-------SEEEEEESCCCCSSSCC
T ss_pred cccc-cEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC-------CEEEEEecCccceeecc
Confidence 3554 9999999988875589999999999999888888775 49999999999 677787764
Q ss_pred -CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 -GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 -~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
+.|.+||+.+++. ..+.
T Consensus 90 ~~~i~~~d~~~~~~-~~l~------------------------------------------------------------- 107 (723)
T 1xfd_A 90 TGYYVLSKIPHGDP-QSLD------------------------------------------------------------- 107 (723)
T ss_dssp CSEEEEEESSSCCC-EECC-------------------------------------------------------------
T ss_pred eeeEEEEECCCCce-Eecc-------------------------------------------------------------
Confidence 4555666665543 1110
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcC------------------
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKK------------------ 283 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------ 283 (762)
....+...+..++|||||++||.+.++.|++|++.+++.. .....+...
T Consensus 108 --------~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~-----~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 108 --------PPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI-----RVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp --------CTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE-----EEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred --------CCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE-----EEecCCCCCceECcccceeEEEEeccC
Confidence 1112344578899999999999888899999999987754 333333333
Q ss_pred eEEEEEcCCCcEEEEeecC-CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 284 LTVLAFHPTQRIVAAGDVT-GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
+.+++|||||++|++++.+ +.+.+|++.... ..+...+..+.|.
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----------------------------------GSIYPTVKPYHYP 219 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCS-----------------------------------SSSSCCCEEEECC
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccC-----------------------------------CcCCCcceeccCC
Confidence 3789999999999988765 467777763211 0122346778888
Q ss_pred cCCCEEEEEecCCeEEEEecCCCce-eccCCC------CCCeEEEEeCCCCCeEEEEecC----CcEEEEEcCCceEEEE
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRI------GSPLLYFTESPDPSLSSISCAD----NQVHLLKMPSMEIIRS 431 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~------~~~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~~~~~~ 431 (762)
++|.. ..+..|++||+.+++. ..+..+ ...+..++|+|||+++++.... ..|++||+.+++....
T Consensus 220 ~~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 220 KAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp BTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 88753 3446899999998875 333332 4578899999999988776543 4799999999887766
Q ss_pred EccCCCCCCCCCcccCce----eeEEEeCCCCEEEEe--ecCc------eEEEEEc-CCCCc--eeeEEeecccccCCCC
Q 040987 432 ISGIKLPCPLPEEYKGLC----RDIAFNHDGGLVALR--AENY------CIHFYSL-LDDRG--ISEVQVCERNHQPGDD 496 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~--~~dg------~i~i~d~-~~~~~--~~~~~~~~~~~~~~~~ 496 (762)
+..+.. +.+ ..++|+|||+.|+.. ..++ .|++||. .++.. ...+.. +
T Consensus 296 ~~~~~~---------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~---~------ 357 (723)
T 1xfd_A 296 HEDESE---------AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS---G------ 357 (723)
T ss_dssp EEEECS---------SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC---S------
T ss_pred EEeccC---------CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec---C------
Confidence 543321 222 378999999988764 3555 5777773 33331 222211 0
Q ss_pred cceeEE-EEEEecCCCeEEEEeeeccccCCCce--eEEEEEEecCCCc--eeEEEEEeecCCCCCceEEEEEcCCCCeEE
Q 040987 497 VTVVVT-LVALSQDGSLMSTVDIKLAEEGIGSL--VCLKFWVSGTQNK--EFTLSTIVYEPHRDAGISAVAFHPNRRAAV 571 (762)
Q Consensus 497 ~~~~v~-~~~~sp~g~~l~~~~~~~~~~~~~~d--~~i~iwd~~~~~~--~~~~~~~~~~~h~~~~v~~~~~spd~~~l~ 571 (762)
...+. .++|+|||+.|+..+. .+ +.+++|++..... ...+.. ...| ...+..++|+|||++|+
T Consensus 358 -~~~~~~~~~~spdg~~l~~~~~--------~~~~~~~~l~~~~~~~~~~~~~l~~--~~~~-~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 358 -DWDVTKILAYDEKGNKIYFLST--------EDLPRRRQLYSANTVGNFNRQCLSC--DLVE-NCTYFSASFSHSMDFFL 425 (723)
T ss_dssp -SSCEEEEEEEETTTTEEEEEES--------SSCTTCCEEEEECSSTTCCCBCSST--TSSS-SCCCCEEEECTTSSEEE
T ss_pred -CeEEEeeeEEcCCCCEEEEEEc--------CCCCcceEEEEEeCCCCCCcceecc--cccC-CCCeEEEEECCCCCEEE
Confidence 22233 4799999999987762 33 6789999875432 222210 0014 56788999999999888
Q ss_pred EEeC
Q 040987 572 SSSY 575 (762)
Q Consensus 572 ~~~~ 575 (762)
....
T Consensus 426 ~~~~ 429 (723)
T 1xfd_A 426 LKCE 429 (723)
T ss_dssp EECC
T ss_pred EEcc
Confidence 7543
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=2.3e-25 Score=251.75 Aligned_cols=319 Identities=14% Similarity=0.100 Sum_probs=223.9
Q ss_pred ccCCceeecCCCEEEEEe-CCEEEEEEcccceEE-eeecCCc-----------------cceeEEEEeCCCCcccceeee
Q 040987 75 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI-SSLEGHK-----------------APVTTVIVVPASTPATKILSY 135 (762)
Q Consensus 75 v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~-~~l~~h~-----------------~~V~~v~~s~~~~~~~~l~~~ 135 (762)
+.. +.|+ |+.++++. ++ | +||+++|+.+ ..+..|. ..|.+++||||+ .+
T Consensus 28 ~~~-~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~-------~~ 95 (706)
T 2z3z_A 28 VVG-LQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG-------LV 95 (706)
T ss_dssp CTT-CEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTT-------EE
T ss_pred CCC-CcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCC-------eE
Confidence 454 8899 55666666 46 8 9999999874 4454443 469999999995 55
Q ss_pred EEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcccc
Q 040987 136 CWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGR 215 (762)
Q Consensus 136 l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 215 (762)
+++ .|++|++||+.+++.....
T Consensus 96 ~~~--~~~~i~~~d~~~~~~~~l~-------------------------------------------------------- 117 (706)
T 2z3z_A 96 VLF--TQGGLVGFDMLARKVTYLF-------------------------------------------------------- 117 (706)
T ss_dssp EEE--ETTEEEEEETTTTEEEEEE--------------------------------------------------------
T ss_pred EEE--ECCEEEEEECCCCceEEcc--------------------------------------------------------
Confidence 555 3599999999887643321
Q ss_pred EEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccC-----chhhhheeeeeeeccCcC-------
Q 040987 216 ICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPD-----VEAERVVMRKITLHHTKK------- 283 (762)
Q Consensus 216 i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~------- 283 (762)
.+...+..++|||||++||++.++.|++|++.+ ++.. .....+...
T Consensus 118 -----------------~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~-----~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 118 -----------------DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI-----AVTIDGTETLVYGQAV 175 (706)
T ss_dssp -----------------CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE-----ESCSCCBTTEEESSCC
T ss_pred -----------------CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE-----EeccCCCCCeEcccch
Confidence 123346678999999999988999999999998 6643 223333332
Q ss_pred -------eEEEEEcCCCcEEEEee---------------------------------cCCeEEEEeccCCceeecccccc
Q 040987 284 -------LTVLAFHPTQRIVAAGD---------------------------------VTGRILIWRGFGDRTFATNDNKM 323 (762)
Q Consensus 284 -------v~~~~~sp~~~~l~~~~---------------------------------~dg~v~vw~~~~~~~~~~~~~~~ 323 (762)
+.+++|||||++|++++ .+..|++||+.+++...
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~------ 249 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY------ 249 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE------
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe------
Confidence 48999999999999987 44679999987664321
Q ss_pred cccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC-----eEEEEecCCC-ceeccC--CCC-
Q 040987 324 NLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG-----VLVVWQLDTG-KKKFLP--RIG- 394 (762)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~i~~wd~~~~-~~~~~~--~~~- 394 (762)
+.....|...+..++|+|||++|++++.++ .|++||+.++ ....+. ...
T Consensus 250 ----------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 250 ----------------------LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp ----------------------CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred ----------------------eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 111124667789999999999999887765 8999999998 443222 111
Q ss_pred --CCeEEEEeCC--CCCeEEEEecCCcEEEEEcC-CceEEEEEccCCCCCCCCCcccCceee-EEEeCCCCEEEEeecC-
Q 040987 395 --SPLLYFTESP--DPSLSSISCADNQVHLLKMP-SMEIIRSISGIKLPCPLPEEYKGLCRD-IAFNHDGGLVALRAEN- 467 (762)
Q Consensus 395 --~~v~~~~~s~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d- 467 (762)
..+..++|+| ||++++++..++.+++|+++ ++..+..+..+. ..+.. ++|+|+++.|++++.+
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~----------~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE----------WEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS----------SCEEEEEEECTTSSEEEEEESSS
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC----------eEEEeeeEEcCCCCEEEEEecCC
Confidence 1246789999 99999998889989999876 566777776654 45665 7999999988766544
Q ss_pred c----eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 468 Y----CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 468 g----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+ .|+.||+.++. ...+. + ...+..++|+|||++++...... ...+.|++||+.+++
T Consensus 378 ~~~~~~l~~~d~~~~~-~~~l~-----~------~~~~~~~~~spdg~~l~~~~~~~-----~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGK-TKDLT-----P------ESGMHRTQLSPDGSAIIDIFQSP-----TVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTCBEEEEEETTCCC-CEESC-----C------SSSEEEEEECTTSSEEEEEEECS-----SCSCEEEEEESSSCE
T ss_pred CCceEEEEEEEcCCCC-ceecc-----C------CCceEEEEECCCCCEEEEEecCC-----CCCcEEEEEECCCCe
Confidence 3 67777877654 22221 1 34578999999999998875210 022579999998876
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=3.7e-25 Score=249.99 Aligned_cols=354 Identities=10% Similarity=0.047 Sum_probs=231.8
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCce--eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT--FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
+..+.|+ |+.+++++.++ | +||+.+++. ............++.. + .....+...|.+++|
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~------------~--~~~~~~~~~v~~~~~ 89 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEG------------C--KFQTTDAFPSFRTLD 89 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-------------------------CCCEEEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccch------------h--ccccccccCceeEEE
Confidence 4457777 55667777777 8 999987754 2110000000000000 0 000112256999999
Q ss_pred ecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-----ceEEEEEccCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS-----MEIIRSISGIK 436 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~ 436 (762)
+|| +.++.+. ++.|++||+.+++...+..+...+.+++|||||++|+++ .++.|++|++.+ ++.........
T Consensus 90 spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~ 166 (706)
T 2z3z_A 90 AGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT 166 (706)
T ss_dssp TTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred CCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence 999 6666554 599999999999887776677788899999999999985 789999999998 77665443332
Q ss_pred CCC----CCCCcccCceeeEEEeCCCCEEEEee---------------------------------cCceEEEEEcCCCC
Q 040987 437 LPC----PLPEEYKGLCRDIAFNHDGGLVALRA---------------------------------ENYCIHFYSLLDDR 479 (762)
Q Consensus 437 ~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~ 479 (762)
... .........+.+++|+|||++|++++ .+..|++||+.+++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 100 00000002258899999999999987 44789999998775
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~ 559 (762)
...... . ..+...+..++|+|||++|++++.+ .......|++||+.+++....+........ ...+.
T Consensus 247 ~~~~~~--~------~~~~~~~~~~~~spdg~~l~~~~~~----~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~-~~~~~ 313 (706)
T 2z3z_A 247 TVYLQT--G------EPKEKFLTNLSWSPDENILYVAEVN----RAQNECKVNAYDAETGRFVRTLFVETDKHY-VEPLH 313 (706)
T ss_dssp EEECCC--C------SCTTCEEEEEEECTTSSEEEEEEEC----TTSCEEEEEEEETTTCCEEEEEEEEECSSC-CCCCS
T ss_pred eEeecc--C------CCCceeEeeEEEECCCCEEEEEEeC----CCCCeeEEEEEECCCCceeeEEEEccCCCe-ECccC
Confidence 322111 0 1125679999999999999987631 111335999999998844333322110111 12346
Q ss_pred EEEEcC--CCCeEEEEeCCCcEEEEEcc-cccccccccCCceeeeeecccCCCCeEE-EEEcCCCcEEEEEc--CC----
Q 040987 560 AVAFHP--NRRAAVSSSYGGDFKVWICN-DELQQKDLQSSGWSCHAVGSYKKKAMTA-AAFSADGSVLAVAA--ET---- 629 (762)
Q Consensus 560 ~~~~sp--d~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~dg~~la~~~--d~---- 629 (762)
+++|+| ||+++++++.|+.++||++. ++.....+ ..+...+.. ++|+|||+.|+.++ ++
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-----------~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-----------TKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-----------CCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-----------CCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 789999 99999999999999999886 33333322 234556766 89999999887664 44
Q ss_pred eEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC--CCeEEEEECCCCc
Q 040987 630 VITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS--KPQLSVWNMSKLS 684 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~--~~~v~vwd~~~~~ 684 (762)
.|+.||+.+++ ...+. |...+.+++|||||++|++.+.+. .+.|++||+.+++
T Consensus 383 ~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 383 HFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 77888888776 34444 667799999999999998875442 1359999999887
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.9e-25 Score=253.40 Aligned_cols=352 Identities=14% Similarity=0.081 Sum_probs=237.5
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc---ceeE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS---EVSV 358 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~ 358 (762)
..+.+++|+|||+++++ +.||.|++||+.+++.. ..+..|.. .|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~------------------------------~~~~~~~~~~~~v~~ 65 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST------------------------------VLIEGKKIESLRAIR 65 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE------------------------------EEECTTTTTTTTCSE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE------------------------------EEeccccccccccce
Confidence 34678999999997766 68999999999776432 33444443 4899
Q ss_pred EEEecCCCEEEEEecC---------CeEEEEecCCCceeccCC---CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 359 LIFSSDGAYLYSGGKE---------GVLVVWQLDTGKKKFLPR---IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~d---------g~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
++|+|||++|++++.+ +.+++||+.+++...+.. +...+..++|||||+.|++++. +.|++||+.++
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g 144 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK 144 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence 9999999999998764 789999999988644433 3334888999999999999865 79999999998
Q ss_pred eEEEEEccCCCCCCC---C-----CcccCceeeEEEeCCCCEEEEeecCc------------------------------
Q 040987 427 EIIRSISGIKLPCPL---P-----EEYKGLCRDIAFNHDGGLVALRAENY------------------------------ 468 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~---~-----~~~~~~v~~~~~s~~~~~l~~~~~dg------------------------------ 468 (762)
+.......+...... . +...+.+.+++|+|||++|++++.++
T Consensus 145 ~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (723)
T ss_dssp CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Confidence 877665543311000 0 00001237899999999999987553
Q ss_pred ----eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 469 ----CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 469 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
.|++||+.+++....+.... ....+...+..++|+|||+++++...+ ...+..|++||+.+++....
T Consensus 225 ~~~~~l~~~d~~~~~~~~~l~~~~----~~~~~~~~~~~~~~SpDg~~l~~~~~~-----~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 225 NPSISLHVIGLNGPTHDLEMMPPD----DPRMREYYITMVKWATSTKVAVTWLNR-----AQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp CCEEEEEEEESSSSCCCEECCCCC----CGGGSSEEEEEEEESSSSEEEEEEEET-----TSCEEEEEEEETTTCCEEEE
T ss_pred CCeeEEEEEECCCCceeEEeeCCc----cCCCccceeEEEEEeCCCeEEEEEEcC-----CCCeEEEEEEeCCCCcceEE
Confidence 78999998876433332110 000114678999999999998776521 11457899999998875544
Q ss_pred EEEEeecCCCCCce----EEEEEcCCCCeEEEE--eCCC------cEEEEE-cccccc--cccccCCceeeeeecccCCC
Q 040987 545 LSTIVYEPHRDAGI----SAVAFHPNRRAAVSS--SYGG------DFKVWI-CNDELQ--QKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 545 ~~~~~~~~h~~~~v----~~~~~spd~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~ 609 (762)
+.. .+ ...+ ..++|+|||+.|+.. ..++ .|++|| ..++.. ...+ ..+..
T Consensus 296 ~~~----~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-----------~~~~~ 359 (723)
T 1xfd_A 296 HED----ES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI-----------TSGDW 359 (723)
T ss_dssp EEE----EC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS-----------CCSSS
T ss_pred EEe----cc-CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe-----------ecCCe
Confidence 321 22 3333 378999999988764 4566 466677 333330 2222 11223
Q ss_pred CeEE-EEEcCCCcEEEEEc--C--CeEEEEeCCCC--eEEEEecc---ccCceeEEEEeCCCCEEEEEEcC-CCCeEEEE
Q 040987 610 AMTA-AAFSADGSVLAVAA--E--TVITLWDPDRN--VLVAVIGE---TLTPIMNMSFVGSSEYLVATSWG-SKPQLSVW 678 (762)
Q Consensus 610 ~i~~-~~~s~dg~~la~~~--d--~~i~iwd~~~~--~~~~~l~~---~~~~v~~~~~s~dg~~l~s~~~d-~~~~v~vw 678 (762)
.+.. ++|||||+.|+..+ + +.++||++... .....+.. |...+..++|+|||++|+..... ......++
T Consensus 360 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~ 439 (723)
T 1xfd_A 360 DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH 439 (723)
T ss_dssp CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE
T ss_pred EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE
Confidence 3444 69999999997664 4 78999988643 23344543 56678999999999998876432 21125566
Q ss_pred ECCCCceeeEEE
Q 040987 679 NMSKLSISWSYL 690 (762)
Q Consensus 679 d~~~~~~~~~~~ 690 (762)
+..++..+..+.
T Consensus 440 ~~~~~~~~~~~~ 451 (723)
T 1xfd_A 440 NTTDKKKMFDLE 451 (723)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEEEEec
Confidence 776666555443
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=4.1e-24 Score=217.49 Aligned_cols=281 Identities=14% Similarity=0.116 Sum_probs=203.0
Q ss_pred EEecCCCE-EEEEecCCeEEEEecCCCceeccCC-CCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCCceE-EEEEccC
Q 040987 360 IFSSDGAY-LYSGGKEGVLVVWQLDTGKKKFLPR-IGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPSMEI-IRSISGI 435 (762)
Q Consensus 360 ~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~-~~~~~~~ 435 (762)
.|.+++++ +++.+.++.|.+||..+++...... ..... .++|+|+|+++++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45555555 6677788999999999998854333 33445 9999999997777666 88999999999887 6666554
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCc---eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY---CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
. ....+++|+|+++++++...++ .|.+||+.+++.+..+.. ...+..++|+|||++
T Consensus 83 ~----------~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 83 Q----------SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----------PYDAVGIAISPNGNG 141 (331)
T ss_dssp S----------SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----------CTTEEEEEECTTSSC
T ss_pred C----------CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----------CCCccceEECCCCCE
Confidence 4 3334499999999999655553 899999998876655433 233689999999997
Q ss_pred EEEEeeeccccCCCceeE-EEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccc-
Q 040987 513 MSTVDIKLAEEGIGSLVC-LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQ- 589 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~- 589 (762)
+++++. .++. |.+|++............. ... ......++|+|||+++++++ .++.|++||+.+++.
T Consensus 142 l~~~~~--------~~~~~i~~~~~~~~g~~~~~~~~~-~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 142 LILIDR--------SSANTVRRFKIDADGVLFDTGQEF-ISG-GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp EEEEEE--------TTTTEEEEEEECTTCCEEEEEEEE-ECS-SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred EEEEec--------CCCceEEEEEECCCCcEeecCCcc-ccC-CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 777653 4456 9999998765543332111 133 44688999999999665554 688999999988776
Q ss_pred --cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeE--EEEeccc----cCc---eeEEE
Q 040987 590 --QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVL--VAVIGET----LTP---IMNMS 656 (762)
Q Consensus 590 --~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~--~~~l~~~----~~~---v~~~~ 656 (762)
...++ ....+..++|+|||++|++++ ++.|.+||+.+++. +..+..+ ..+ ...++
T Consensus 212 ~~~~~~~------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (331)
T 3u4y_A 212 TLLNAVG------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMA 279 (331)
T ss_dssp EEEEEEE------------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEE
T ss_pred ceeeecc------------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceE
Confidence 33331 246678899999999887765 78899999999877 4433322 222 35589
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
|+|||++|++++.++ +.|.+||+.+...
T Consensus 280 ~spdg~~l~v~~~~~-~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 280 LNKTETKLFISANIS-RELKVFTISGKVV 307 (331)
T ss_dssp ECTTSSEEEEEETTT-TEEEEEETTSCEE
T ss_pred ECCCCCEEEEecCCC-CcEEEEEecCCcc
Confidence 999999998877655 2499999987543
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=4.4e-23 Score=209.84 Aligned_cols=288 Identities=9% Similarity=0.006 Sum_probs=199.9
Q ss_pred EEcCCCcE-EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC
Q 040987 288 AFHPTQRI-VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366 (762)
Q Consensus 288 ~~sp~~~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 366 (762)
.|.+++++ +++.+.++.|.+||..+++.. ..+..+...+ .++|+|+|+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~------------------------------~~~~~~~~~~-~~~~s~dg~ 52 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL------------------------------NQITLGYDFV-DTAITSDCS 52 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEE------------------------------EEEECCCCEE-EEEECSSSC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccccee------------------------------eeEEccCCcc-eEEEcCCCC
Confidence 45565554 667778999999999877543 3333445556 999999999
Q ss_pred EEEEEec-CCeEEEEecCCCce-eccC-CCCCCeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCCC
Q 040987 367 YLYSGGK-EGVLVVWQLDTGKK-KFLP-RIGSPLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 367 ~l~s~~~-dg~i~~wd~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
++++++. ++.|.+||..+++. .... .+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+...
T Consensus 53 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----- 127 (331)
T 3u4y_A 53 NVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP----- 127 (331)
T ss_dssp EEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-----
T ss_pred EEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-----
Confidence 7777665 78999999999886 4333 3334444499999999999554443 8999999999988877653
Q ss_pred CCCcccCceeeEEEeCCCCEEEEee-cCce-EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRA-ENYC-IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
.....++|+|||++++++. .++. +.+|++.....+.......... ...+..++|+|||+++++++.
T Consensus 128 ------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~spdg~~l~v~~~ 195 (331)
T 3u4y_A 128 ------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG------GTRPFNITFTPDGNFAFVANL 195 (331)
T ss_dssp ------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS------SSSEEEEEECTTSSEEEEEET
T ss_pred ------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC------CCCccceEECCCCCEEEEEeC
Confidence 3458999999998666654 4477 9999998655443322110000 334789999999997766652
Q ss_pred eccccCCCceeEEEEEEecCCCc---eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEccccccccccc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNK---EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQ 594 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 594 (762)
.++.|.+||+.+++. ...+. . ...+..++|+|||+++++++ .++.|.+||+.+++......
T Consensus 196 --------~~~~v~v~d~~~~~~~~~~~~~~------~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 196 --------IGNSIGILETQNPENITLLNAVG------T-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp --------TTTEEEEEECSSTTSCEEEEEEE------C-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred --------CCCeEEEEECCCCcccceeeecc------C-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecc
Confidence 578999999998887 44332 2 45678899999999776665 46789999998876622110
Q ss_pred CCceeeee-ecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeE
Q 040987 595 SSGWSCHA-VGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVL 641 (762)
Q Consensus 595 ~~~~~~~~-~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~ 641 (762)
..... ...........++|+|||++|++++ ++.|.+||+.....
T Consensus 261 ---~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 261 ---FGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp ---EECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ---cccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 00000 0011112235689999999987765 68999999987543
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=8.7e-23 Score=208.87 Aligned_cols=304 Identities=13% Similarity=0.183 Sum_probs=202.1
Q ss_pred cEEE-EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 294 RIVA-AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 294 ~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
++++ +++.++.|++|++....... . .....|...+.+++|+|+|++|++++
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~---------------------------~-~~~~~~~~~~~~~~~spdg~~l~~~~ 56 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALT---------------------------L-TQVVDVPGQVQPMVVSPDKRYLYVGV 56 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEE---------------------------E-EEEEECSSCCCCEEECTTSSEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEE---------------------------E-eeeEecCCCCceEEECCCCCEEEEee
Confidence 3444 44779999999985321111 1 11234666788999999999999888
Q ss_pred cC-CeEEEEecC--CCceec--cCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcC---CceEEEEEccCCCCCCCCC
Q 040987 373 KE-GVLVVWQLD--TGKKKF--LPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMP---SMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 373 ~d-g~i~~wd~~--~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~ 443 (762)
.+ +.|.+|++. +++... .......+..++|+|+++++++++. ++.|.+||+. ..+....+..+
T Consensus 57 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------- 128 (343)
T 1ri6_A 57 RPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-------- 128 (343)
T ss_dssp TTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--------
T ss_pred cCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC--------
Confidence 76 899999998 555432 2222337889999999998877765 7889999994 34445554433
Q ss_pred cccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEE--eecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 444 EYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQ--VCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
..+.+++|+|+++++++++ .++.|++||+.+...+.... ...... ...+..++|+|+|+++++++.
T Consensus 129 ---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~pdg~~l~~~~~-- 197 (343)
T 1ri6_A 129 ---DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE------GAGPRHMVFHPNEQYAYCVNE-- 197 (343)
T ss_dssp ---TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST------TCCEEEEEECTTSSEEEEEET--
T ss_pred ---CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC------CCCcceEEECCCCCEEEEEeC--
Confidence 3578899999999888877 88999999998733232221 111100 345788999999998766652
Q ss_pred cccCCCceeEEEEEEecC--CCceeEEEEEe--ecCCC-CCceEEEEEcCCCCeEEEEe-CCCcEEEEEccc--cccccc
Q 040987 521 AEEGIGSLVCLKFWVSGT--QNKEFTLSTIV--YEPHR-DAGISAVAFHPNRRAAVSSS-YGGDFKVWICND--ELQQKD 592 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~--~~~h~-~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~--~~~~~~ 592 (762)
.++.|.+|++.. +.... ..... ..++. ...+..++|+|+|++|+++. .++.|.+||+.. +.....
T Consensus 198 ------~~~~i~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 198 ------LNSSVDVWELKDPHGNIEC-VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp ------TTTEEEEEESSCTTSCCEE-EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred ------CCCEEEEEEecCCCCcEEE-EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 678999999964 33211 11111 11110 23567899999999877554 789999999983 221111
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEE--eCCCCe--EEEEeccccCceeEEEEeCCCC
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLW--DPDRNV--LVAVIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iw--d~~~~~--~~~~l~~~~~~v~~~~~s~dg~ 662 (762)
.....+ ..+..++|+|||++|++++ ++.|.+| |.++++ .+..+... ....+++|.++.+
T Consensus 271 ---------~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 271 ---------GFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp ---------EEEECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred ---------eeecCC-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence 111112 3388999999999888876 7999999 555664 34444432 3456788887644
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=2.2e-23 Score=212.69 Aligned_cols=274 Identities=8% Similarity=-0.041 Sum_probs=205.2
Q ss_pred eEEEEecCCCeEEEEecCCcceeeeecCcc---cccCCceeecCCCEEEEEe--CCEEEEEEcccceEEeeecC-C----
Q 040987 44 FIFAVARSSGLCRTAEYPAVNSKMIRGGRS---YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEG-H---- 113 (762)
Q Consensus 44 ~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~---~v~~~~~~s~dg~~la~~~--~~~i~iwd~~~~~~~~~l~~-h---- 113 (762)
.+++++..++.|.+||..+++......+.. .+.. ++|+|||++++++. ++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMV-PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCC-EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccc-eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 478888999999999999877765544333 4676 99999998876665 48999999999998877753 2
Q ss_pred ccceeEEEEeCCCCcccceeeeEEeee------------cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccC
Q 040987 114 KAPVTTVIVVPASTPATKILSYCWTAS------------LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSD 181 (762)
Q Consensus 114 ~~~V~~v~~s~~~~~~~~l~~~l~s~s------------~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (762)
...+.+++|+|+| ++|++++ .++.|.+||+.+++.+..+..
T Consensus 81 ~~~~~~~~~s~dg-------~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------------- 133 (337)
T 1pby_B 81 VKSLFGAALSPDG-------KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------------- 133 (337)
T ss_dssp EECTTCEEECTTS-------SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--------------------
T ss_pred cccccceEECCCC-------CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--------------------
Confidence 2368899999999 4666664 468899999887776544321
Q ss_pred CCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEE
Q 040987 182 EKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIW 261 (762)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iw 261 (762)
...+..++|+|||++|+++ ++.|.+|
T Consensus 134 -----------------------------------------------------~~~~~~~~~s~dg~~l~~~-~~~i~~~ 159 (337)
T 1pby_B 134 -----------------------------------------------------PRQITMLAWARDGSKLYGL-GRDLHVM 159 (337)
T ss_dssp -----------------------------------------------------CSSCCCEEECTTSSCEEEE-SSSEEEE
T ss_pred -----------------------------------------------------CCCcceeEECCCCCEEEEe-CCeEEEE
Confidence 2235678899999988876 7899999
Q ss_pred EccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC-C-----------------------eEEEEeccCCceee
Q 040987 262 KVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT-G-----------------------RILIWRGFGDRTFA 317 (762)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g-----------------------~v~vw~~~~~~~~~ 317 (762)
|+.+++.. .....+. ....+.|+|++++++..+.. + .|.+||+.+++...
T Consensus 160 d~~~~~~~-----~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 233 (337)
T 1pby_B 160 DPEAGTLV-----EDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233 (337)
T ss_dssp ETTTTEEE-----EEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred ECCCCcEe-----eeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence 99987743 2222222 01133789999877654432 2 46788876654321
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCe
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPL 397 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v 397 (762)
..+..+...+..++|+|||++++++ ++.|.+||+.+++..........+
T Consensus 234 -----------------------------~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~ 282 (337)
T 1pby_B 234 -----------------------------REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSY 282 (337)
T ss_dssp -----------------------------EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCC
T ss_pred -----------------------------eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCce
Confidence 2334456678899999999999988 689999999998876555555678
Q ss_pred EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCC
Q 040987 398 LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
.+++|+|+|+++++++.++.|.+||+.+++.+..+....
T Consensus 283 ~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp CEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred eeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 899999999999999889999999999999888876543
No 143
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.92 E-value=3.4e-24 Score=242.58 Aligned_cols=334 Identities=14% Similarity=0.050 Sum_probs=224.6
Q ss_pred CceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCcc---ceeEEEEeCCCCcccceeeeEEeeec---------CCeE
Q 040987 78 PPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKA---PVTTVIVVPASTPATKILSYCWTASL---------DGTI 145 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~---~V~~v~~s~~~~~~~~l~~~l~s~s~---------d~~i 145 (762)
.++|+|||++++++.++.|++||+++++....+.+|.. .|.+++||||| ++|++++. |++|
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-------~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-------QFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-------SEEEEEEEEEECSSSCEEEEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-------CeEEEEecCceeEEeecceEE
Confidence 48999999877776689999999999998888876655 49999999999 56777765 5777
Q ss_pred EEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 146 KYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
++||+.+++.+..
T Consensus 93 ~~~d~~~g~~~~~------------------------------------------------------------------- 105 (719)
T 1z68_A 93 YIYDLSNGEFVRG------------------------------------------------------------------- 105 (719)
T ss_dssp EEEETTTTEECCS-------------------------------------------------------------------
T ss_pred EEEECCCCccccc-------------------------------------------------------------------
Confidence 7787776653110
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeee-eccCcCe-----------------EEE
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKIT-LHHTKKL-----------------TVL 287 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v-----------------~~~ 287 (762)
. .. ...+..++|||||+.||.+.++.|++|++.+++.. ++. .++...| .++
T Consensus 106 -~-~l----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~-----~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 106 -N-EL----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF-----QITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp -S-CC----CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE-----ECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred -e-ec----CcccccceECCCCCEEEEEECCeEEEEeCCCCCcE-----EEecCCCcCCeEcccccceeeeecccCcccE
Confidence 0 00 13467899999999999889999999999887653 222 2222222 489
Q ss_pred EEcCCCcEEEEeecCC----------------------------------eEEEEeccCCcee---eccccccccccccc
Q 040987 288 AFHPTQRIVAAGDVTG----------------------------------RILIWRGFGDRTF---ATNDNKMNLNLMNN 330 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg----------------------------------~v~vw~~~~~~~~---~~~~~~~~~~~~~~ 330 (762)
+|||||++||+++.|. .|++||+.+++.. ..
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~------------ 242 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV------------ 242 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC------------
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc------------
Confidence 9999999999987652 6677777654321 00
Q ss_pred ccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC----CeEEEEe----cCCCceeccC-----CCCCCe
Q 040987 331 EEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE----GVLVVWQ----LDTGKKKFLP-----RIGSPL 397 (762)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----g~i~~wd----~~~~~~~~~~-----~~~~~v 397 (762)
.....+.+|...+..++|+||++.+++.... ..|.+|| +.+++...+. .+...+
T Consensus 243 -------------~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 243 -------------PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp -------------CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred -------------cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 0002244677889999999998777664432 3588999 8887765544 445555
Q ss_pred E-----EEEeCCCCCeEEE--EecCC--cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-
Q 040987 398 L-----YFTESPDPSLSSI--SCADN--QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN- 467 (762)
Q Consensus 398 ~-----~~~~s~~~~~l~~--~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 467 (762)
. .+.|+|||+.++. ...++ .|.+|++.+++ ...+..+. ..+..+.+. +++.|+..+.+
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~----------~~v~~~~~~-d~~~i~~~~~~~ 377 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK----------WEAINIFRV-TQDSLFYSSNEF 377 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS----------SCEEEEEEE-CSSEEEEEESCG
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCc----------eEEEEEEEE-eCCEEEEEEecC
Confidence 5 7899999997665 33444 57777877665 34444332 456677777 88887777654
Q ss_pred ----ceEEEEEcCC--CCc-eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 468 ----YCIHFYSLLD--DRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 468 ----g~i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+..++|.+.. +.. ...+.... .++...+..+.|+||+++++..... . ....+.+||+.+++
T Consensus 378 ~~~~~~~~l~~~~~~~g~~~~~~l~~~~------~~~~~~~~~~~~s~dg~~l~~~~s~---~---~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 378 EEYPGRRNIYRISIGSYPPSKKCVTCHL------RKERCQYYTASFSDYAKYYALVCYG---P---GIPISTLHDGRTDQ 445 (719)
T ss_dssp GGCTTCBEEEEEECSSSSCCEEESSTTT------TTTTBCBEEEEECGGGSSEEEEECC---B---SSCEEEEECSSSCC
T ss_pred CCCCceEEEEEEeCCCCCCCceeccCcc------CCCCCceEEEEECCCCCEEEEEcCC---C---CCCeEEEEECCCCC
Confidence 7788887754 221 11111000 0013457789999999988865421 0 22468899988776
Q ss_pred ceeEE
Q 040987 541 KEFTL 545 (762)
Q Consensus 541 ~~~~~ 545 (762)
....+
T Consensus 446 ~~~~~ 450 (719)
T 1z68_A 446 EIKIL 450 (719)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 54333
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.4e-22 Score=207.40 Aligned_cols=283 Identities=15% Similarity=0.149 Sum_probs=193.5
Q ss_pred EEEEecCCeEEEEecC-CCce--eccCCCCCCeEEEEeCCCCCeEEEEecC-CcEEEEEcC--Cce--EEEEEccCCCCC
Q 040987 368 LYSGGKEGVLVVWQLD-TGKK--KFLPRIGSPLLYFTESPDPSLSSISCAD-NQVHLLKMP--SME--IIRSISGIKLPC 439 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~-~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~i~d~~--~~~--~~~~~~~~~~~~ 439 (762)
+++++.++.|++||+. +++. .....+...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+...
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---- 83 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---- 83 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS----
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC----
Confidence 3444778999999995 3332 3334566678899999999999888876 899999997 444 33334322
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..+..++|+|+++++++++. ++.|.+||+..+........... ...+.+++|+|+|+++++++.
T Consensus 84 -------~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~~~~~ 148 (343)
T 1ri6_A 84 -------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--------LDGCHSANISPDNRTLWVPAL 148 (343)
T ss_dssp -------SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--------CTTBCCCEECTTSSEEEEEEG
T ss_pred -------CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC--------CCCceEEEECCCCCEEEEecC
Confidence 35688999999998877664 78999999963322222211111 234778999999998887763
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEE-EeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEccc--cccccccc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLST-IVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICND--ELQQKDLQ 594 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~--~~~~~~~~ 594 (762)
.++.|.+||+.+......... ...... ...+..++|+|+++++++++ .++.+.+|++.. +......
T Consensus 149 --------~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~- 218 (343)
T 1ri6_A 149 --------KQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ- 218 (343)
T ss_dssp --------GGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE-
T ss_pred --------CCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe-
Confidence 578999999987333222210 111222 45788999999999776555 789999999954 3221110
Q ss_pred CCceeeeeecc---cCCCCeEEEEEcCCCcEEEEE-c-CCeEEEEeCC--C--CeEEEEeccccCceeEEEEeCCCCEEE
Q 040987 595 SSGWSCHAVGS---YKKKAMTAAAFSADGSVLAVA-A-ETVITLWDPD--R--NVLVAVIGETLTPIMNMSFVGSSEYLV 665 (762)
Q Consensus 595 ~~~~~~~~~~~---~~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd~~--~--~~~~~~l~~~~~~v~~~~~s~dg~~l~ 665 (762)
...... .....+..++|+|||++|+++ . ++.|.+||+. + .+.+..+..+.. +..++|+|||++|+
T Consensus 219 -----~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 219 -----TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLI 292 (343)
T ss_dssp -----EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEE
T ss_pred -----eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEE
Confidence 000011 113467789999999988755 4 8999999998 3 355555654444 88999999999999
Q ss_pred EEE-cCCCCeEEEEEC--CCCceee
Q 040987 666 ATS-WGSKPQLSVWNM--SKLSISW 687 (762)
Q Consensus 666 s~~-~d~~~~v~vwd~--~~~~~~~ 687 (762)
+++ .++. |.+|++ .++++..
T Consensus 293 ~~~~~~~~--v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 293 AAGQKSHH--ISVYEIVGEQGLLHE 315 (343)
T ss_dssp EECTTTCE--EEEEEEETTTTEEEE
T ss_pred EecCCCCe--EEEEEEcCCCceeeE
Confidence 888 4666 999954 4665543
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=5.9e-23 Score=211.07 Aligned_cols=284 Identities=10% Similarity=-0.010 Sum_probs=214.7
Q ss_pred cccceeEEEEecCCCEEEEEec-------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEc
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGK-------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKM 423 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~-------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~ 423 (762)
....+..++|+|+++++++++. ++.|.+||..+++..........+..++++|+|++++++.. ++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456789999999999888773 56899999999987655555566788999999997665544 789999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+++.+..+..+.... ........+.+++|+|++++++++. .++.|.+||..+++....+... ...+
T Consensus 119 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~ 187 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKR-TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT----------GKMS 187 (353)
T ss_dssp TTCCEEEEEESCCCCC-CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC----------CTTC
T ss_pred CCCeeEEEEecCCCcc-ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC----------CCcc
Confidence 9999888876543110 0000001367899999999888776 4788999999988766554311 2236
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFK 580 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~ 580 (762)
..++|+|+|+++++++ .++.|.+||..+++....+... ..++ ...+.+++|+|+++++++++. ++.|.
T Consensus 188 ~~~~~s~dg~~l~~~~---------~~~~i~~~d~~~~~~~~~~~~~-~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTN---------ADGELITIDTADNKILSRKKLL-DDGK-EHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp CCCEEETTTTEEEEEC---------TTSEEEEEETTTTEEEEEEECC-CSSS-CCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred ceEEECCCCCEEEEEc---------CCCeEEEEECCCCeEEEEEEcC-CCCC-CcccceEEECCCCCEEEEEeCCCCEEE
Confidence 7789999999999988 7789999999988766554321 1123 456888999999998777665 48999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
+||..+++...... ......++|+|||+++++++ ++.|.+||..+++.+..+..+ ..+.+++|+
T Consensus 257 ~~d~~~~~~~~~~~-------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 322 (353)
T 3vgz_A 257 VVDTRNGNILAKVA-------------APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALS 322 (353)
T ss_dssp EEETTTCCEEEEEE-------------CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEEC
T ss_pred EEECCCCcEEEEEE-------------cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEc
Confidence 99998887665542 11125699999999766654 899999999999998888654 467899999
Q ss_pred CCCCEEEEEEcCC
Q 040987 659 GSSEYLVATSWGS 671 (762)
Q Consensus 659 ~dg~~l~s~~~d~ 671 (762)
|||++|+.+..++
T Consensus 323 ~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 323 ADGKTLYVSVKQK 335 (353)
T ss_dssp TTSCEEEEEEECC
T ss_pred CCCCEEEEEEccc
Confidence 9999888877664
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.2e-22 Score=208.81 Aligned_cols=283 Identities=8% Similarity=0.065 Sum_probs=211.7
Q ss_pred cccccCCceeecCCCEEEEEe--------CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT--------SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG 143 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~--------~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~ 143 (762)
...+.. ++|+|||++|+++. ++.|.+||.++++.+..+... ..+..++|+|+|+ .++++...++
T Consensus 40 ~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~------~l~v~~~~~~ 111 (353)
T 3vgz_A 40 GKGAYE-MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQ------TLWFGNTVNS 111 (353)
T ss_dssp ESSEEE-EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTT------EEEEEETTTT
T ss_pred ccCccc-eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCC------EEEEEecCCC
Confidence 344555 99999999999888 458999999999998888643 4588999999994 3556667789
Q ss_pred eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCC
Q 040987 144 TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTE 223 (762)
Q Consensus 144 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~ 223 (762)
.|.+||..+++.+..+..+....
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~--------------------------------------------------------- 134 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKR--------------------------------------------------------- 134 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCC---------------------------------------------------------
T ss_pred EEEEEeCCCCeeEEEEecCCCcc---------------------------------------------------------
Confidence 99999999998877665321000
Q ss_pred ccccceeeeccCCCceEEEECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 224 SRLAGGVTLAEMKEPQVITISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 224 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
........+.+++|+|||++++++. ++.|.+||..+++.. .....+...+.+++|+|++++|++++
T Consensus 135 ------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~ 203 (353)
T 3vgz_A 135 ------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK-----TAIQNTGKMSTGLALDSEGKRLYTTN 203 (353)
T ss_dssp ------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-----EEECCCCTTCCCCEEETTTTEEEEEC
T ss_pred ------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-----EEecCCCCccceEEECCCCCEEEEEc
Confidence 0000112356789999999887543 788999999988753 33333555688999999999999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC-CeEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE-GVLVV 379 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~i~~ 379 (762)
.++.|.+||..+++...... ..-.++...+..++|+|+|++++.++.+ +.|.+
T Consensus 204 ~~~~i~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 204 ADGELITIDTADNKILSRKK--------------------------LLDDGKEHFFINISLDTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp TTSEEEEEETTTTEEEEEEE--------------------------CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE
T ss_pred CCCeEEEEECCCCeEEEEEE--------------------------cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEE
Confidence 99999999998775442110 0011245567889999999987776654 89999
Q ss_pred EecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 380 WQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 380 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
||..+++.........+ ..++|+|+|++++++. .++.|.+||..+++.+..+... ..+..++|+||+
T Consensus 258 ~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~s~dg 325 (353)
T 3vgz_A 258 VDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-----------THPNSLALSADG 325 (353)
T ss_dssp EETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-----------SEEEEEEECTTS
T ss_pred EECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-----------CCCCeEEEcCCC
Confidence 99999887543333333 5689999999777666 5899999999999988887653 367899999999
Q ss_pred CEEEEeecCc
Q 040987 459 GLVALRAENY 468 (762)
Q Consensus 459 ~~l~~~~~dg 468 (762)
++|+++..++
T Consensus 326 ~~l~v~~~~~ 335 (353)
T 3vgz_A 326 KTLYVSVKQK 335 (353)
T ss_dssp CEEEEEEECC
T ss_pred CEEEEEEccc
Confidence 9888776654
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1.2e-23 Score=214.68 Aligned_cols=280 Identities=11% Similarity=0.037 Sum_probs=210.9
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEEEccCCCCCCC
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSIS-CADNQVHLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
+++++++.++.|.+||..+++......... .+..++|+|+|+.++++ ..++.|.+||+.+++.+..+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 478899999999999999988765444444 57889999999876554 45789999999999888776532100
Q ss_pred CCcccCceeeEEEeCCCCEEEEee------------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRA------------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.+...+..++|+|++++++++. .++.|.+||+.+++....+.. ...+..++|+|+
T Consensus 79 --~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~d 145 (337)
T 1pby_B 79 --ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARD 145 (337)
T ss_dssp --EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTT
T ss_pred --cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------CCCcceeEECCC
Confidence 0012567899999999998886 578999999988766555433 223667899999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC------------
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG------------ 577 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg------------ 577 (762)
|++|++++ +.|.+||+.+++....+.. ..+ .. .+.|+||++.++..+.++
T Consensus 146 g~~l~~~~-----------~~i~~~d~~~~~~~~~~~~---~~~-~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 207 (337)
T 1pby_B 146 GSKLYGLG-----------RDLHVMDPEAGTLVEDKPI---QSW-EA---ETYAQPDVLAVWNQHESSGVMATPFYTARK 207 (337)
T ss_dssp SSCEEEES-----------SSEEEEETTTTEEEEEECS---TTT-TT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred CCEEEEeC-----------CeEEEEECCCCcEeeeeec---ccc-CC---CceeCCCccEEeeeccCCCceeeeeecccc
Confidence 99888875 4799999998876544421 111 12 237899998776554332
Q ss_pred ------------cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEe
Q 040987 578 ------------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 578 ------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l 645 (762)
.|.+||+.+++.. ... ...+...+.+++|+|||++++++ ++.|++||+.+++.+..+
T Consensus 208 ~~~~~~~~~~~~~v~~~d~~~~~~~-~~~---------~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 208 DIDPADPTAYRTGLLTMDLETGEMA-MRE---------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCCEE-EEE---------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEE
T ss_pred ccccccccccccceEEEeCCCCCce-Eee---------cCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCccee
Confidence 3688999887654 221 12345678899999999999888 899999999999988877
Q ss_pred ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 646 GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 646 ~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
..+ ..+.+++|+|||++|++++.++. |.+||+.+++.+..+..+.
T Consensus 277 ~~~-~~~~~~~~s~dg~~l~~~~~~~~--i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 277 PLP-HSYYSVNVSTDGSTVWLGGALGD--LAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp ECS-SCCCEEEECTTSCEEEEESBSSE--EEEEETTTCCEEEEEECGG
T ss_pred cCC-CceeeEEECCCCCEEEEEcCCCc--EEEEECcCCcEEEEEEcCC
Confidence 643 46789999999999999988877 9999999999988776653
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=3.6e-23 Score=206.79 Aligned_cols=253 Identities=13% Similarity=0.016 Sum_probs=194.2
Q ss_pred ecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEccc-ceEEeeecCC-ccceeEEEEeCCC
Q 040987 49 ARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTST-GLQISSLEGH-KAPVTTVIVVPAS 126 (762)
Q Consensus 49 ~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~-~~~~~~l~~h-~~~V~~v~~s~~~ 126 (762)
++.++.|++||..+++...+..|...|.+ ++|||||++||++.++.|.+||+++ ++....+.+| ...|.+++|+|++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~-~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEA-PNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEE-EEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEe-eEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 45789999999999999889999999997 9999999999999999999999999 8888777776 4789999999999
Q ss_pred CcccceeeeEEeee--cCCeEEEEeC--CCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcC
Q 040987 127 TPATKILSYCWTAS--LDGTIKYWDF--SVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKS 202 (762)
Q Consensus 127 ~~~~~l~~~l~s~s--~d~~i~vWd~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (762)
++|++++ .++.++||.+ .+++. ..+
T Consensus 97 -------~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------------------------------------------- 125 (297)
T 2ojh_A 97 -------ALYAISDKVEFGKSAIYLLPSTGGTP-RLM------------------------------------------- 125 (297)
T ss_dssp -------SEEEEEECTTTSSCEEEEEETTCCCC-EEC-------------------------------------------
T ss_pred -------CEEEEEEeCCCCcceEEEEECCCCce-EEe-------------------------------------------
Confidence 5777777 3455666654 33221 111
Q ss_pred CccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-E-EeCCeEEEEEccCchhhhheeeeeeecc
Q 040987 203 HKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-I-RKQRKLLIWKVPDVEAERVVMRKITLHH 280 (762)
Q Consensus 203 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 280 (762)
.+...+..++|+|||++|+ + ..++.+.||++...... ......+
T Consensus 126 ------------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~ 171 (297)
T 2ojh_A 126 ------------------------------TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV----ETRLTHG 171 (297)
T ss_dssp ------------------------------CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC----EEECCCS
T ss_pred ------------------------------ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc----ceEcccC
Confidence 1122367789999999887 3 36898999986432211 1344567
Q ss_pred CcCeEEEEEcCCCcEEEEee-cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGD-VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
...+.+++|+|++++|++++ .++.+++|++.... .....+..|...+..+
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 222 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-----------------------------SSVERITDSAYGDWFP 222 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-----------------------------SCEEECCCCSEEEEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCC-----------------------------CCcEEEecCCcccCCe
Confidence 78899999999999888766 58899999875211 1234556677788999
Q ss_pred EEecCCCEEEEEecC-----------CeEEEEecCCCceec---cCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 360 IFSSDGAYLYSGGKE-----------GVLVVWQLDTGKKKF---LPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 360 ~~s~~g~~l~s~~~d-----------g~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
+|+|+|++|++++.+ +.|++||+.+++... ...+...+..++|+|++++|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999988765 569999999887643 235677889999999999998887653
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.92 E-value=2.2e-23 Score=235.93 Aligned_cols=350 Identities=11% Similarity=0.012 Sum_probs=229.3
Q ss_pred EEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc---ceeEEEEe
Q 040987 286 VLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS---EVSVLIFS 362 (762)
Q Consensus 286 ~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s 362 (762)
+++|+|||++++++ .|+.|++||+.+++.. ..+.+|.. .+.+++||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~------------------------------~~~~~~~~~~~~~~~~~~S 68 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY------------------------------TILSNRTMKSVNASNYGLS 68 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE------------------------------EEECHHHHHTTTCSEEEEC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE------------------------------EEEccccccccceeeEEEC
Confidence 78999999766554 6999999999877532 23333433 48899999
Q ss_pred cCCCEEEEEec---------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 363 SDGAYLYSGGK---------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 363 ~~g~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
|||++|++++. ++.|++||+.+++..........+..++|||||+.|+++ .++.|++|++.+++......
T Consensus 69 pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 69 PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCC
T ss_pred CCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEec
Confidence 99999998876 689999999998873212233568889999999999988 47899999999887654332
Q ss_pred cCCCCCCCCCccc---------CceeeEEEeCCCCEEEEeecCc----------------------------------eE
Q 040987 434 GIKLPCPLPEEYK---------GLCRDIAFNHDGGLVALRAENY----------------------------------CI 470 (762)
Q Consensus 434 ~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg----------------------------------~i 470 (762)
...... ....+. +...+++|+|||++|++++.|. .|
T Consensus 148 ~~~~~~-v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 148 NGRENK-IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCBTTT-EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred CCCcCC-eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 111000 000000 1125899999999999987652 78
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE----ecCCCceeEEE
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV----SGTQNKEFTLS 546 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd----~~~~~~~~~~~ 546 (762)
++||+.+++....+...... ....+...+..++|+||++++++...+ ......|.+|| ..+++....+.
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~SpD~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPA--MIASSDYYFSWLTWVTDERVCLQWLKR-----VQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp EEEESSCHHHHCCEECCCCH--HHHTSCEEEEEEEESSSSEEEEEEEES-----STTEEEEEEEEECSSSSSEECCGGGE
T ss_pred EEEECCCCCccceeEccCCc--cCCCCcceEEEeEEeCCCeEEEEEecc-----ccCeEEEEEEcccCCCCCCceEEEEe
Confidence 89999876542111110000 000126678999999998877764421 01335788999 66655433221
Q ss_pred EEeecCCCCCceE-----EEEEcCCCCeEEE--EeCCC--cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc
Q 040987 547 TIVYEPHRDAGIS-----AVAFHPNRRAAVS--SSYGG--DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS 617 (762)
Q Consensus 547 ~~~~~~h~~~~v~-----~~~~spd~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 617 (762)
....+| ...+. .++|+|||+.++. ...+| .|++||+.+++... + ..+...+..+.++
T Consensus 300 -~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~-l-----------t~~~~~v~~~~~~ 365 (719)
T 1z68_A 300 -HIEESR-TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ-I-----------TSGKWEAINIFRV 365 (719)
T ss_dssp -EEEECS-SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE-C-----------SCSSSCEEEEEEE
T ss_pred -cccccC-CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEe-c-----------ccCceEEEEEEEE
Confidence 000245 55565 7899999997665 33455 46677776655222 2 1234567777777
Q ss_pred CCCcEEEEEc-C-----CeEEEEeCCC--Ce-EEEEec----cccCceeEEEEeCCCCEEEE-EEcCCCCeEEEEECCCC
Q 040987 618 ADGSVLAVAA-E-----TVITLWDPDR--NV-LVAVIG----ETLTPIMNMSFVGSSEYLVA-TSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 618 ~dg~~la~~~-d-----~~i~iwd~~~--~~-~~~~l~----~~~~~v~~~~~s~dg~~l~s-~~~d~~~~v~vwd~~~~ 683 (762)
+++.|+..+ + +..++|.+.. +. ....+. +|...+..+.|+||+++++. ++.+....+.+||+.++
T Consensus 366 -d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 366 -TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp -CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred -eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 888777665 5 7788887653 42 123332 25567889999999998875 44443345899999998
Q ss_pred ceeeEEE
Q 040987 684 SISWSYL 690 (762)
Q Consensus 684 ~~~~~~~ 690 (762)
+....+.
T Consensus 445 ~~~~~~~ 451 (719)
T 1z68_A 445 QEIKILE 451 (719)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 8655444
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=7e-23 Score=204.68 Aligned_cols=254 Identities=15% Similarity=0.085 Sum_probs=193.2
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccC-chhhhheeeeeeecc-CcCeE
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPD-VEAERVVMRKITLHH-TKKLT 285 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~-~~~v~ 285 (762)
..++.++.|.+||+.+++.. ....|...+.+++|+|||++|+++.++.|.+||+.+ ++.. .....+ ...+.
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~ 88 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE-----KVDTGFATICNN 88 (297)
T ss_dssp --CCCCEEEEEEETTTTEEE--EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE-----ECCCTTCCCBCS
T ss_pred CCCCcceeEEEEeCCCCcee--eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce-----Eecccccccccc
Confidence 34568899999999998876 556688999999999999999988899999999998 7643 334344 46789
Q ss_pred EEEEcCCCcEEEEee--cCCeEEEEec--cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 286 VLAFHPTQRIVAAGD--VTGRILIWRG--FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 286 ~~~~sp~~~~l~~~~--~dg~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
+++|+|++++|++++ .++...||.+ .++. ...+..+. .+..++|
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-------------------------------~~~~~~~~-~~~~~~~ 136 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-------------------------------PRLMTKNL-PSYWHGW 136 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-------------------------------CEECCSSS-SEEEEEE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-------------------------------eEEeecCC-CccceEE
Confidence 999999999999988 3345555554 3332 12233232 4888999
Q ss_pred ecCCCEEE-EEecCCeEEEEec--CCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcC-CceEEEEEccCC
Q 040987 362 SSDGAYLY-SGGKEGVLVVWQL--DTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMP-SMEIIRSISGIK 436 (762)
Q Consensus 362 s~~g~~l~-s~~~dg~i~~wd~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~ 436 (762)
+||+++|+ +++.++.+.+|++ .+++...+..+...+.+++|+|+++.+++++ .++.+.+|++. .+.....+..+.
T Consensus 137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence 99999887 6778898888884 5566666777788899999999999888776 48889999886 455566665554
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeecC-----------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
..+..++|+|++++|++++.+ +.|++||+.+++........ .+ ...+..++
T Consensus 217 ----------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~------~~~~~~~~ 278 (297)
T 2ojh_A 217 ----------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF--GG------QGTMNSPN 278 (297)
T ss_dssp ----------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE--ES------TTTSCSCC
T ss_pred ----------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC--CC------Ccccccce
Confidence 678899999999999988765 67999999887653332221 11 34577889
Q ss_pred EecCCCeEEEEee
Q 040987 506 LSQDGSLMSTVDI 518 (762)
Q Consensus 506 ~sp~g~~l~~~~~ 518 (762)
|+|+|++|++++.
T Consensus 279 ~spdg~~l~~~~~ 291 (297)
T 2ojh_A 279 WSPDGDEFAYVRY 291 (297)
T ss_dssp BCTTSSEEEEEEE
T ss_pred ECCCCCEEEEEEe
Confidence 9999999998873
No 151
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.91 E-value=1.1e-21 Score=221.73 Aligned_cols=389 Identities=8% Similarity=0.021 Sum_probs=242.8
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEee
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVE 194 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (762)
....+++|+||| .+++++ |++|++||+.++++...+..+..
T Consensus 17 ~~~~~~~w~~dg-------~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~------------------------------ 57 (740)
T 4a5s_A 17 LKLYSLRWISDH-------EYLYKQ--ENNILVFNAEYGNSSVFLENSTF------------------------------ 57 (740)
T ss_dssp CCCCCEEECSSS-------EEEEEE--TTEEEEEETTTCCEEEEECTTTT------------------------------
T ss_pred ccccccEECCCC-------cEEEEc--CCcEEEEECCCCceEEEEechhh------------------------------
Confidence 446789999999 688886 99999999999987655543210
Q ss_pred eccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC----------CeEEEEEcc
Q 040987 195 DTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ----------RKLLIWKVP 264 (762)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----------~~i~iwd~~ 264 (762)
.........++|||||++|+.+.+ +.+.+||+.
T Consensus 58 -------------------------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~ 100 (740)
T 4a5s_A 58 -------------------------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (740)
T ss_dssp -------------------------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred -------------------------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence 001112345799999999986643 678899999
Q ss_pred CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccc
Q 040987 265 DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD 344 (762)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (762)
+++.. .+..|...+..++|||||+.||.+ .++.|++|++.+++..... .++.
T Consensus 101 ~~~~~------~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt---------------------~~g~ 152 (740)
T 4a5s_A 101 KRQLI------TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT---------------------WTGK 152 (740)
T ss_dssp TTEEC------CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC---------------------SCCB
T ss_pred CCcEE------EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEc---------------------CCCC
Confidence 98753 345677789999999999999988 4789999999776543211 0111
Q ss_pred cceeeecccc---------ceeEEEEecCCCEEEEEecCCe-EEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec
Q 040987 345 LCTTWHWHPS---------EVSVLIFSSDGAYLYSGGKEGV-LVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA 414 (762)
Q Consensus 345 ~~~~~~~h~~---------~v~~~~~s~~g~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (762)
....+.++.+ ....+.|||||++|+.++.|.+ +.+|++....... .+...+..+.+.+.|... .
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~--~~~~~~~~~~yp~~G~~~----~ 226 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES--LQYPKTVRVPYPKAGAVN----P 226 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT--CSSCEEEEEECCBTTSCC----C
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC--CCCCcceeecCCCCcCcC----C
Confidence 1122333332 2345899999999999876544 7788764221110 233456677777766431 1
Q ss_pred CCcEEEEEcCC---ce--EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec----CceEEEEEcCCCCc-----
Q 040987 415 DNQVHLLKMPS---ME--IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE----NYCIHFYSLLDDRG----- 480 (762)
Q Consensus 415 d~~i~i~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~----- 480 (762)
...|++||+.+ ++ ....+..... ...+...+..++|+|||+.++.... +..|++||+.+++.
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPAS----MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHH----HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCcc----CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 23689999998 73 2223322000 0002267899999999997766543 34799999998861
Q ss_pred -eeeEEeecccccCCCCccee-----EEEEEEecCCCeEE-EEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCC
Q 040987 481 -ISEVQVCERNHQPGDDVTVV-----VTLVALSQDGSLMS-TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH 553 (762)
Q Consensus 481 -~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~g~~l~-~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h 553 (762)
...+.. ..+ ... ....+|+|||+.++ ..+.+ .+...|++||..++.... + ...
T Consensus 303 ~~~~l~~--~~~------~~~v~~~~~~~p~fspDG~~l~~~~s~~------~G~~~l~~~~~~~~~~~~-l-----T~g 362 (740)
T 4a5s_A 303 VARQHIE--MST------TGWVGRFRPSEPHFTLDGNSFYKIISNE------EGYRHICYFQIDKKDCTF-I-----TKG 362 (740)
T ss_dssp GGGCEEE--ECS------SSCSSSSSCCCCEECTTSSEEEEEEECT------TSCEEEEEEETTCSSCEE-S-----CCS
T ss_pred EEEEeee--ccC------CceEccCcCCCceEcCCCCEEEEEEEcC------CCceEEEEEECCCCceEe-c-----ccC
Confidence 111111 111 112 23678999999887 55421 145789999988765432 2 122
Q ss_pred CCCceEEEEEcCCCCeEEEEeCC-----C--cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 554 RDAGISAVAFHPNRRAAVSSSYG-----G--DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 554 ~~~~v~~~~~spd~~~l~~~~~d-----g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
...+..+.. +|++.|+..+.. + .|+..++.++.....+. + ...........+.|||||++++..
T Consensus 363 -~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt-----~--~~~~~~~~~~~~~~S~dg~~~~~~ 433 (740)
T 4a5s_A 363 -TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS-----C--ELNPERCQYYSVSFSKEAKYYQLR 433 (740)
T ss_dssp -SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS-----T--TTSTTTBCBEEEEECTTSSEEEEE
T ss_pred -CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeec-----c--ccCCCCCceEEEEECCCCCEEEEE
Confidence 345555442 446666655543 3 34444554443221110 0 001124567899999999987765
Q ss_pred c----CCeEEEEeCCCCeEEEEec
Q 040987 627 A----ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 627 ~----d~~i~iwd~~~~~~~~~l~ 646 (762)
. -..+.+++..+++.+..+.
T Consensus 434 ~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 434 CSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp ECSBSSCEEEEEETTTTEEEEEEE
T ss_pred eCCCCCCEEEEEECCCCcEEEEec
Confidence 4 2578999999887766654
No 152
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.91 E-value=9.6e-22 Score=222.07 Aligned_cols=376 Identities=9% Similarity=-0.028 Sum_probs=246.1
Q ss_pred CCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcC-----eEEEEEcCCCcEEEEeecC--------
Q 040987 236 KEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKK-----LTVLAFHPTQRIVAAGDVT-------- 302 (762)
Q Consensus 236 ~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~~~~~d-------- 302 (762)
.....++|+|||++++++ ++.|++||+.+++.. ..+..|... ...++|||||++|++++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSS-----VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEE-----EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccccccEECCCCcEEEEc-CCcEEEEECCCCceE-----EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 346689999999999887 999999999998864 445555432 2448899999999998875
Q ss_pred -CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 303 -GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 303 -g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
+.+.+||+.+++. ..+..|...+..++|||||+.|+.+. ++.|++|+
T Consensus 91 ~~~~~~~d~~~~~~-------------------------------~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 91 TASYDIYDLNKRQL-------------------------------ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp EEEEEEEETTTTEE-------------------------------CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceEEEEEECCCCcE-------------------------------EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence 5677999987742 23455677899999999999999885 68999999
Q ss_pred cCCCceeccCCCC--CCe-----------------EEEEeCCCCCeEEEEecCC-cEEEEEcCCceEEEEEccCCCCCCC
Q 040987 382 LDTGKKKFLPRIG--SPL-----------------LYFTESPDPSLSSISCADN-QVHLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 382 ~~~~~~~~~~~~~--~~v-----------------~~~~~s~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
+.+++...+...+ ..+ ..+.|||||+.|+....|. .+.+|++...... ..+.
T Consensus 139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~---~~~~----- 210 (740)
T 4a5s_A 139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQY----- 210 (740)
T ss_dssp STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST---TCSS-----
T ss_pred CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC---CCCC-----
Confidence 9988865543322 222 3489999999999887654 4777775321000 0011
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC---CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD---DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..+..+.+.+.|.. .....|++||+.+ ++.+......... ....+...+..++|+|||+.++....
T Consensus 211 -----~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~wspdg~~~~~~~~ 279 (740)
T 4a5s_A 211 -----PKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPA--SMLIGDHYLCDVTWATQERISLQWLR 279 (740)
T ss_dssp -----CEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCH--HHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred -----CcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCc--cCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence 34566777776643 2234799999988 6422221111100 00012667999999999997776642
Q ss_pred eccccCCCceeEEEEEEecCCC----c--eeEEEEEeecCCCCCceE-----EEEEcCCCCeEE-EEeC-CC--cEEEEE
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQN----K--EFTLSTIVYEPHRDAGIS-----AVAFHPNRRAAV-SSSY-GG--DFKVWI 583 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~----~--~~~~~~~~~~~h~~~~v~-----~~~~spd~~~l~-~~~~-dg--~i~iwd 583 (762)
+ ...+..|++||+.+++ + ...+. ..+| ...+. .++|+|||+.|+ ..+. +| .|++||
T Consensus 280 r-----~~~~~~i~~~d~~tg~~~~~~~~~~~l~---~~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 280 R-----IQNYSVMDICDYDESSGRWNCLVARQHI---EMST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp S-----STTEEEEEEEEEETTTTEEEECGGGCEE---EECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred C-----CCCEEEEEEEECCCCccccceeEEEEee---eccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 1 1145689999999987 1 11111 1344 44444 789999999877 6653 33 588889
Q ss_pred cccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C-------CeEEEEeCCCCeEEEEecc----ccCc
Q 040987 584 CNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E-------TVITLWDPDRNVLVAVIGE----TLTP 651 (762)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d-------~~i~iwd~~~~~~~~~l~~----~~~~ 651 (762)
..++....... ....+..+. ++|++.|+..+ . ..|+..++..++....+.. ....
T Consensus 351 ~~~~~~~~lT~------------g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~ 417 (740)
T 4a5s_A 351 IDKKDCTFITK------------GTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQ 417 (740)
T ss_dssp TTCSSCEESCC------------SSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBC
T ss_pred CCCCceEeccc------------CCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCc
Confidence 88765543331 234455443 24576665543 3 3566666666554434432 2356
Q ss_pred eeEEEEeCCCCEEEEEEcC-CCCeEEEEECCCCceeeEEE
Q 040987 652 IMNMSFVGSSEYLVATSWG-SKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d-~~~~v~vwd~~~~~~~~~~~ 690 (762)
...+.||||+++++..... +...+.+++..+++....+.
T Consensus 418 ~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 418 YYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp BEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 8899999999987765433 33458899998887655443
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=3.1e-21 Score=197.44 Aligned_cols=288 Identities=10% Similarity=0.064 Sum_probs=186.7
Q ss_pred CCeEEEEecC--CCceec--cCCCCCCeEEEEeCCCCCeEEEEec---CCcEEEEEcCCceE--EEEEccCCCCCCCCCc
Q 040987 374 EGVLVVWQLD--TGKKKF--LPRIGSPLLYFTESPDPSLSSISCA---DNQVHLLKMPSMEI--IRSISGIKLPCPLPEE 444 (762)
Q Consensus 374 dg~i~~wd~~--~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~ 444 (762)
++.|.+|+++ +++... ...+......++|+|||+ +++++. ++.|.+|++.+++. +..+..+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-------- 85 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-------- 85 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES--------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC--------
Confidence 4566666554 455432 333445677899999999 555554 58999999977653 33333333
Q ss_pred ccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecc-cccCC-CCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 445 YKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCER-NHQPG-DDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
..+..++|+|||++|++++ .++.+.+|++........+..... +..+. ......+.+++|+|||+++++..
T Consensus 86 --~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~---- 159 (347)
T 3hfq_A 86 --TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL---- 159 (347)
T ss_dssp --CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET----
T ss_pred --CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC----
Confidence 5678899999999888887 679999999964333333222111 10000 00133588999999999544443
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEccc--ccccccccCCce
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICND--ELQQKDLQSSGW 598 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~--~~~~~~~~~~~~ 598 (762)
.++.|.+|++............. ... ......++|+|||++++++ ..++.+.+|++.. ++...... .
T Consensus 160 -----~~~~v~~~~~~~~g~~~~~~~~~-~~~-g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~---~ 229 (347)
T 3hfq_A 160 -----GSDKVYVYNVSDAGQLSEQSVLT-MEA-GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI---V 229 (347)
T ss_dssp -----TTTEEEEEEECTTSCEEEEEEEE-CCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE---E
T ss_pred -----CCCEEEEEEECCCCcEEEeeeEE-cCC-CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee---e
Confidence 67899999998333222222111 122 3467889999999966664 5678999999874 33211100 0
Q ss_pred eeeeecccCCCCeEEEEEcCCCcEEEEE-c-CCeEEEEeCCC---CeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCC
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSVLAVA-A-ETVITLWDPDR---NVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKP 673 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd~~~---~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~ 673 (762)
............+..++|+|||++|+++ . ++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.+. +
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~ 308 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-D 308 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-T
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-C
Confidence 0000000112458899999999988655 4 89999999973 356666666666789999999999999988763 2
Q ss_pred eEEEE--ECCCCceee
Q 040987 674 QLSVW--NMSKLSISW 687 (762)
Q Consensus 674 ~v~vw--d~~~~~~~~ 687 (762)
.|.+| |.++|++..
T Consensus 309 ~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 309 NATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEECTTTCCEEE
T ss_pred cEEEEEEeCCCCeEEe
Confidence 49999 556677653
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=1e-20 Score=193.66 Aligned_cols=268 Identities=16% Similarity=0.140 Sum_probs=176.3
Q ss_pred ccccceeEEEEecCCCEEEEEec---CCeEEEEecCCCceecc---CCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEc
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGK---EGVLVVWQLDTGKKKFL---PRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKM 423 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~---dg~i~~wd~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~ 423 (762)
.+...+..++|+|||+ |++++. ++.|++|++.+++...+ ..+...+..++|+|||++|++++ .++.+.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3556678899999998 666554 58999999987765332 33566788999999999988887 6789999999
Q ss_pred CC-c--eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 424 PS-M--EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 424 ~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
.. + +.+..+........ .......+.+++|+|||+++++...++.|++|++.....+.......... ...
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~------g~~ 188 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA------GFG 188 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT------TCC
T ss_pred CCCCCeeecceeecCCCCCC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC------CCC
Confidence 63 2 33333322110000 01112357889999999966666678899999998333222222111100 234
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce-eEEEEEeecCC---CCCceEEEEEcCCCCeEE-EEeC
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE-FTLSTIVYEPH---RDAGISAVAFHPNRRAAV-SSSY 575 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~h---~~~~v~~~~~spd~~~l~-~~~~ 575 (762)
+..++|+|||+++++++. .++.|.+|++...... ..+......+. ....+..++|+|||++|+ +...
T Consensus 189 p~~~~~spdg~~l~v~~~--------~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 189 PRHLVFSPDGQYAFLAGE--------LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp EEEEEECTTSSEEEEEET--------TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred CceEEECCCCCEEEEEeC--------CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 678999999997777652 6789999999852222 11211111111 014588999999999874 5556
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEE--eCCCCeEE
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLW--DPDRNVLV 642 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iw--d~~~~~~~ 642 (762)
++.|.+|++......... .....+...+..++|+|||++|++++ ++.|.+| |.++|++.
T Consensus 261 ~~~v~v~~~~~~g~~~~~--------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 261 YNTLAVFAVTADGHLTLI--------QQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTEEEEEEECGGGCEEEE--------EEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEEEe--------EEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 899999999743211111 11223355678999999999988886 5899999 55667654
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.3e-21 Score=200.75 Aligned_cols=287 Identities=12% Similarity=0.014 Sum_probs=200.3
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCC--CeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEEEcc
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS--PLLYFTESPDPSLSSIS-CADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
.++++++++++++++.+++|++||..+++......... .+..++|+|+|+.++++ ..++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 35677888899999999999999999988754433333 57889999999876655 4678999999999988877653
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
...+ ......+..++|+|||+++++++.+ +.|.+||+.+++....+..... ...+.
T Consensus 84 ~~~~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~ 151 (349)
T 1jmx_B 84 SSVP----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--------PRQVY 151 (349)
T ss_dssp CCST----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--------CSSCC
T ss_pred cccc----ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC--------CCccc
Confidence 2200 0001236789999999999998865 8999999987544332222111 22477
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec---------------CCCC---CceEEEEEc
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE---------------PHRD---AGISAVAFH 564 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------~h~~---~~v~~~~~s 564 (762)
+++|+|||+ +++++ . .|.+||..+++....+...... +... .....++++
T Consensus 152 ~~~~s~dg~-l~~~~---------~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 152 LMRAADDGS-LYVAG---------P--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp CEEECTTSC-EEEES---------S--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred ceeECCCCc-EEEcc---------C--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 889999999 55554 3 3999999988765544210000 0000 023456676
Q ss_pred CCCCe-----------EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEEcCCeEE
Q 040987 565 PNRRA-----------AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVAAETVIT 632 (762)
Q Consensus 565 pd~~~-----------l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~~d~~i~ 632 (762)
+++.. +.....++.+++|++. .+...+..++|+| ||++++++ ++.|.
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~ 278 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------DLTELYFTGLRSPKDPNQIYGV-LNRLA 278 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEE--------------------ECSSCEEEEEECSSCTTEEEEE-ESEEE
T ss_pred CCCcCCccccccceeEEEEeccCCcEEecccc--------------------cCCCcceeeEecCCCCCEEEEE-cCeEE
Confidence 65421 1122233445555442 1345678999999 99999988 89999
Q ss_pred EEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 633 LWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 633 iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+||+.+++.+..+.. ...+.+++|+|||++|++++.++. |.+||+++++.+..+..+
T Consensus 279 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~--v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 279 KYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFND--LAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSE--EEEEETTTTEEEEEEECS
T ss_pred EEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCe--EEEEeccccceeeeeecC
Confidence 999999998887763 345789999999999999887876 999999999988877655
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=6.6e-22 Score=217.62 Aligned_cols=275 Identities=15% Similarity=0.090 Sum_probs=198.9
Q ss_pred cccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEec---CCcEEEEEcCC-
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCA---DNQVHLLKMPS- 425 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~~~- 425 (762)
+..+|++++|+|||++|++++. ||++.+|++++++...+..+. ..+..++|+|| +.++++.. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999888887777766 57899999999 77776654 34455554432
Q ss_pred --ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 426 --MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 426 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+... .+... ......+|+||++.+ ++...++.+.+||+.+++....... .. .
T Consensus 99 ~~g~~~-~l~~~-----------~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-----------~~--~ 153 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-----------KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-----------PG--F 153 (582)
T ss_dssp STTCCE-ECTTS-----------CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-----------SS--C
T ss_pred CCCccc-cccCC-----------CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-----------CC--c
Confidence 2222 33222 123466888888643 3333445566999988754322211 12 6
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC--cEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG--DFK 580 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg--~i~ 580 (762)
+++|+|||++|++++.+. +....|++||+.+++.. .+ ..| ...+..++|||||+.|+++..++ .|+
T Consensus 154 ~~~~spDG~~la~~~~~~-----~~~~~i~~~d~~~g~~~-~l-----~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFG-----GGRVSLFTSNLSSGGLR-VF-----DSG-EGSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp EEEEEEETTEEEEEEEEE-----TTEEEEEEEETTTCCCE-EE-----CCS-SCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred eEEECCCCCEEEEEEEcC-----CCCeEEEEEcCCCCCce-Ee-----ecC-CCccccceECCCCCEEEEccCCCeeEEE
Confidence 889999999999887210 01278999999888654 22 456 77889999999999999888888 899
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEE--------EcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCc
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAA--------FSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTP 651 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~ 651 (762)
+||+.+++.. .. ..+...+..++ |||||+++++++ |+++++|++ |+.+.. +.+.
T Consensus 222 ~~d~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~ 284 (582)
T 3o4h_A 222 TVDPRDGSVE-DL-----------ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGN 284 (582)
T ss_dssp EECTTTCCEE-EC-----------CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSE
T ss_pred EEcCCCCcEE-Ec-----------cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCc
Confidence 9999887765 33 23444555555 999998888887 999999999 766552 3466
Q ss_pred eeEEEEeCCCCEEEEEEcCCC-CeEEEEECCC
Q 040987 652 IMNMSFVGSSEYLVATSWGSK-PQLSVWNMSK 682 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d~~-~~v~vwd~~~ 682 (762)
+.+++|+ ||+++++++.+.. ..+.+||..+
T Consensus 285 v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 285 HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred eEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 8999999 9999999887753 2477777654
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=1.1e-21 Score=215.82 Aligned_cols=268 Identities=11% Similarity=0.032 Sum_probs=195.0
Q ss_pred cCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-ccee
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP-SEVS 357 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~ 357 (762)
+..+|.+++|+|||++||+++. ||+++||++.+++. ..+..|. ..+.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-------------------------------~~lt~~~~~~~~ 68 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-------------------------------VKLNREPINSVL 68 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-------------------------------EECCSSCCSEEC
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-------------------------------Eeeecccccccc
Confidence 3557999999999999999877 99999999865532 2334444 5789
Q ss_pred EEEEecCCCEEEEEec---CCeEEEE--ec--CCCceeccCCCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcCCceEE
Q 040987 358 VLIFSSDGAYLYSGGK---EGVLVVW--QL--DTGKKKFLPRIGSPLLYFTESPDPSLS-SISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~---dg~i~~w--d~--~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~ 429 (762)
.++|+|| +.+++++. +....+| +. ..... .+.. .......+|+|||+.+ ++...++.+.+||+.+++..
T Consensus 69 ~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~ 145 (582)
T 3o4h_A 69 DPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145 (582)
T ss_dssp EECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred cccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE
Confidence 9999999 77777664 3444554 44 33332 3222 2234567888888653 33445556669999988766
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
.....+ . .+++|+|||++|++++.+ +.|++||+.+++.. .+. .+ ...+..++
T Consensus 146 ~l~~~~-----------~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~----~~------~~~~~~~~ 201 (582)
T 3o4h_A 146 ELARLP-----------G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD----SG------EGSFSSAS 201 (582)
T ss_dssp EEEEES-----------S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC----CS------SCEEEEEE
T ss_pred EeecCC-----------C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee----cC------CCccccce
Confidence 554321 2 789999999999988877 78999999887643 221 11 56689999
Q ss_pred EecCCCeEEEEeeeccccCCCcee--EEEEEEecCCCceeEEEEEeecCCCCCceEEEE--------EcCCCCeEEEEeC
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLV--CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA--------FHPNRRAAVSSSY 575 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~--------~spd~~~l~~~~~ 575 (762)
|||||++|+++. .++ .|++||+.+++.. .+ .+| ...+..++ |+|||.++++++.
T Consensus 202 ~SpDG~~l~~~~---------~~~~~~i~~~d~~~~~~~-~~-----~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 202 ISPGMKVTAGLE---------TAREARLVTVDPRDGSVE-DL-----ELP-SKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp ECTTSCEEEEEE---------CSSCEEEEEECTTTCCEE-EC-----CCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred ECCCCCEEEEcc---------CCCeeEEEEEcCCCCcEE-Ec-----cCC-CcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 999999999665 455 8999999988654 22 456 66666677 9999988899999
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C---CeEEEEeCCC
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E---TVITLWDPDR 638 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d---~~i~iwd~~~ 638 (762)
|+.+++|++ ++.... ....+.+++|+ ||+++++++ + ..+++||..+
T Consensus 266 ~g~~~l~~~--g~~~~~--------------~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 266 EGRSAVFID--GERVEA--------------PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TTEEEEEET--TEEECC--------------CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCcEEEEEE--CCeecc--------------CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999999999 443321 24678899999 999998876 5 4577777764
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=4.2e-20 Score=189.36 Aligned_cols=311 Identities=11% Similarity=0.003 Sum_probs=198.2
Q ss_pred ceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCc-cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceE
Q 040987 79 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHK-APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156 (762)
Q Consensus 79 ~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~ 156 (762)
++++++++++++++ ++.|.+||+++++.+.++..+. ..+..++|+|+++ .++++...++.|.+||+.+++.+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~------~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR------TAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS------EEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC------EEEEEeCCCCcEEEEeCCCCcEE
Confidence 78999999999988 6999999999999998887543 2588999999994 34456667899999999998877
Q ss_pred EEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCC
Q 040987 157 KTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMK 236 (762)
Q Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (762)
..+..... ......
T Consensus 79 ~~~~~~~~------------------------------------------------------------------~~~~~~ 92 (349)
T 1jmx_B 79 FHANLSSV------------------------------------------------------------------PGEVGR 92 (349)
T ss_dssp EEEESCCS------------------------------------------------------------------TTEEEE
T ss_pred EEEEcccc------------------------------------------------------------------cccccc
Confidence 65542100 000012
Q ss_pred CceEEEECCCCCEEEEEe-------------CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCC
Q 040987 237 EPQVITISSSGKYFGIRK-------------QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~-------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 303 (762)
.+..++|+|||++|+++. ++.|.+||+.+++.. ...... .+...+.+++|+|||+ +++++.
T Consensus 93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~-- 166 (349)
T 1jmx_B 93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--KPVRTF-PMPRQVYLMRAADDGS-LYVAGP-- 166 (349)
T ss_dssp CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--CCSEEE-ECCSSCCCEEECTTSC-EEEESS--
T ss_pred cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc--ceeeec-cCCCcccceeECCCCc-EEEccC--
Confidence 356789999999998653 489999999986543 111222 3344688999999999 555543
Q ss_pred eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC-CeEEEEec
Q 040987 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE-GVLVVWQL 382 (762)
Q Consensus 304 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~i~~wd~ 382 (762)
.|.+||..+++................... .+..+........ ......+++++++......... ..+..+|.
T Consensus 167 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 167 DIYKMDVKTGKYTVALPLRNWNRKGYSAPD--VLYFWPHQSPRHE----FSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp SEEEECTTTCCEEEEECSTTCCCTTBCCCB--CCCCCCCCCTTCE----EEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred cEEEEeCCCCceeccccccccCCccccCcc--ceeeecCCCccee----EEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 499999987765432110000000000000 0000000000000 0023456666654221111111 11222444
Q ss_pred CCCceec--cCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 383 DTGKKKF--LPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 383 ~~~~~~~--~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.+++... .......+..++++| ++++++++ ++.|.+||+.+++.+..+... ..+.+++|+|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-----------HTYYCVAFDKKGD 307 (349)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-----------SCCCEEEECSSSS
T ss_pred cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-----------CCccceEECCCCC
Confidence 4443311 122455788999999 99999888 889999999999988877643 3457899999999
Q ss_pred EEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 460 LVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 460 ~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
+|++++.++.|.+||+.+++.+..+..
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCCeEEEEeccccceeeeeec
Confidence 999888899999999998876665543
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=1.3e-19 Score=186.58 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=183.3
Q ss_pred cccceeEEEEecCCCEEEEEecC----CeEEEEecCC--Cceec---cCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKE----GVLVVWQLDT--GKKKF---LPRIGSPLLYFTESPDPSLSSISC-ADNQVHLL 421 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~d----g~i~~wd~~~--~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~ 421 (762)
+...+..++|+|||++|++++.+ +.|.+|++.. ++... ...+......+++ ++++++++. .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66677889999999999998875 7999998875 44432 2234456777787 888877776 57899999
Q ss_pred EcCCceEEEEEc---cCCC-CCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCc------eeeE---Eee
Q 040987 422 KMPSMEIIRSIS---GIKL-PCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRG------ISEV---QVC 487 (762)
Q Consensus 422 d~~~~~~~~~~~---~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~------~~~~---~~~ 487 (762)
++.....+..+. .+.. ...........+.+++|+|||++++++. .++.|.+|++..... +... ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997533222111 0110 0000011123467899999999776655 478999999876542 2111 111
Q ss_pred cccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 488 ERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
.... ...+..++|+|||+++++++. .++.|.+|++.++.............+ ......++|+|||
T Consensus 206 ~~~~------~~~~~~~~~spdg~~l~v~~~--------~~~~v~v~~~~~g~~~~~~~~~~~~~~-~~~~~~i~~spdg 270 (361)
T 3scy_A 206 KVAP------GSGPRHLIFNSDGKFAYLINE--------IGGTVIAFRYADGMLDEIQTVAADTVN-AQGSGDIHLSPDG 270 (361)
T ss_dssp ECCT------TCCEEEEEECTTSSEEEEEET--------TTCEEEEEEEETTEEEEEEEEESCSSC-CCCEEEEEECTTS
T ss_pred ecCC------CCCCeEEEEcCCCCEEEEEcC--------CCCeEEEEEecCCceEEeEEEecCCCC-CCCcccEEECCCC
Confidence 1111 344788999999998887763 578999999986643222111112233 4557899999999
Q ss_pred CeEEEEeCC--CcEEEEEcc--cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEE--eCCCC
Q 040987 568 RAAVSSSYG--GDFKVWICN--DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLW--DPDRN 639 (762)
Q Consensus 568 ~~l~~~~~d--g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iw--d~~~~ 639 (762)
++|+++..+ +.|.+|++. ++...... .... ...+..++|+|||++|++++ ++.|.+| |.+++
T Consensus 271 ~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~---------~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g 340 (361)
T 3scy_A 271 KYLYASNRLKADGVAIFKVDETNGTLTKVG---------YQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG 340 (361)
T ss_dssp SEEEEEECSSSCEEEEEEECTTTCCEEEEE---------EEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred CEEEEECCCCCCEEEEEEEcCCCCcEEEee---------EecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC
Confidence 998776654 889999996 33321111 1111 45678999999999988886 7899995 55677
Q ss_pred eEEEEe-ccccCceeEEEEe
Q 040987 640 VLVAVI-GETLTPIMNMSFV 658 (762)
Q Consensus 640 ~~~~~l-~~~~~~v~~~~~s 658 (762)
++.... ..+...+.++.|.
T Consensus 341 ~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 341 LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CEEECSCCEECSSEEEEEEE
T ss_pred cEeecceeeeCCCCeEEEEc
Confidence 765543 2344568888886
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=1.3e-19 Score=186.36 Aligned_cols=292 Identities=11% Similarity=0.101 Sum_probs=190.9
Q ss_pred CEEEEEe----cCCeEEEEec--CCCceeccCC-CCCCeEEEEeCCCCCeEEEEecC----CcEEEEEcCC--ceE--EE
Q 040987 366 AYLYSGG----KEGVLVVWQL--DTGKKKFLPR-IGSPLLYFTESPDPSLSSISCAD----NQVHLLKMPS--MEI--IR 430 (762)
Q Consensus 366 ~~l~s~~----~dg~i~~wd~--~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~--~~~--~~ 430 (762)
.+++.|+ .++.|++|++ ++++...+.. +......++|+|||++|++++.+ +.+.+|++.. ++. +.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 3455553 3567888866 4555432111 55667789999999999998875 7999998865 443 22
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEee----cccccCCCCcceeEEEEE
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVC----ERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~ 505 (762)
....+. .....+++ ++++|++++ .++.+.+|++.....+..+... ..+..+.......+.+++
T Consensus 94 ~~~~~~----------~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 94 TQKTMG----------ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR 161 (361)
T ss_dssp EEECSS----------SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred EeccCC----------CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence 232222 34566676 888777766 5789999999765443322111 001111111234478899
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc------eeEE--EEEeecCCCCCceEEEEEcCCCCeEEEEe-CC
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK------EFTL--STIVYEPHRDAGISAVAFHPNRRAAVSSS-YG 576 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~------~~~~--~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~d 576 (762)
|+|||+++++++. .++.|.+|++..... .... .......+ ......++|+|||+++++++ .+
T Consensus 162 ~spdg~~l~~~~~--------~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 162 ITPDGKYLLADDL--------GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP-GSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp ECTTSSEEEEEET--------TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTT
T ss_pred ECCCCCEEEEEeC--------CCCEEEEEEEcCCCCcccccceeecccccceecCC-CCCCeEEEEcCCCCEEEEEcCCC
Confidence 9999998877663 578999999986542 2111 01111233 55678999999999888777 58
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C--CeEEEEeCC--CCe--EEEEecccc
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E--TVITLWDPD--RNV--LVAVIGETL 649 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d--~~i~iwd~~--~~~--~~~~l~~~~ 649 (762)
+.|.+|++.++...... .......+......++|+|||++|+++. + +.|.+|++. +++ .+..+.. .
T Consensus 233 ~~v~v~~~~~g~~~~~~------~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g 305 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQ------TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G 305 (361)
T ss_dssp CEEEEEEEETTEEEEEE------EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S
T ss_pred CeEEEEEecCCceEEeE------EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C
Confidence 89999999866432211 1111222345568999999999987765 4 799999985 454 4444543 4
Q ss_pred CceeEEEEeCCCCEEEEEEc-CCCCeEEEE--ECCCCceee
Q 040987 650 TPIMNMSFVGSSEYLVATSW-GSKPQLSVW--NMSKLSISW 687 (762)
Q Consensus 650 ~~v~~~~~s~dg~~l~s~~~-d~~~~v~vw--d~~~~~~~~ 687 (762)
..+.+++|+|||++|++++. ++. |.+| |.++|++..
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~--v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNV--IQIFERDQATGLLTD 344 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTE--EEEEEECTTTCCEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCC--EEEEEEECCCCcEee
Confidence 56789999999999999984 454 9996 555676543
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=8.4e-21 Score=197.71 Aligned_cols=296 Identities=14% Similarity=0.018 Sum_probs=197.7
Q ss_pred ceeeeccccceeE-----EEEecCCCEEEEEec-CC--eEEEEecCCCceeccCCCCC-CeEEEEeCCCCCeEEEEecCC
Q 040987 346 CTTWHWHPSEVSV-----LIFSSDGAYLYSGGK-EG--VLVVWQLDTGKKKFLPRIGS-PLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 346 ~~~~~~h~~~v~~-----~~~s~~g~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~ 416 (762)
+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++...+..... .+..+.|+|||+.|+++..++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 3455555544444 789999999998887 66 58999999988866554433 444678999999999999899
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceee--EEEeCCCCEEEEe----------------------ecCceEEE
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD--IAFNHDGGLVALR----------------------AENYCIHF 472 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~----------------------~~dg~i~i 472 (762)
.+++||+.+++....+..+. ..+.. ..++|++++++.. ..+..|++
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~----------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPA----------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEEETTTCCEEEEEECCT----------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred eEEEEECCCCcceeeeechh----------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 99999999988776665443 33333 3458999988743 23478999
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
||+.+++....... ...+..++|+| ||+.|+....... ......|.++|..++... .+ .
T Consensus 173 ~d~~~g~~~~l~~~-----------~~~~~~~~~sp~dg~~l~~~~~~~~---~~~~~~l~~~d~~~~~~~-~l-----~ 232 (388)
T 3pe7_A 173 VDLKTGESTVILQE-----------NQWLGHPIYRPYDDSTVAFCHEGPH---DLVDARMWLINEDGTNMR-KV-----K 232 (388)
T ss_dssp EETTTCCEEEEEEE-----------SSCEEEEEEETTEEEEEEEEECSCT---TTSSCSEEEEETTSCCCE-ES-----C
T ss_pred EECCCCceEEeecC-----------CccccccEECCCCCCEEEEEEecCC---CCCcceEEEEeCCCCceE-Ee-----e
Confidence 99998754322211 34578999999 9999988863100 001347888887765432 22 1
Q ss_pred CCCC-CceEEEEEcCCCCeEEEEeCC-C----cEEEEEcccccccccccCCceeeeeecccCC---CCeEEEEEcCCCcE
Q 040987 552 PHRD-AGISAVAFHPNRRAAVSSSYG-G----DFKVWICNDELQQKDLQSSGWSCHAVGSYKK---KAMTAAAFSADGSV 622 (762)
Q Consensus 552 ~h~~-~~v~~~~~spd~~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~s~dg~~ 622 (762)
.+.. ..+..++|+|||+.|+..+.+ + .|++||+.+++...... ...+. .....++|+|||+.
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---------~~~~~~~~~~~~~~~~spdg~~ 303 (388)
T 3pe7_A 233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS---------MPACSHLMSNYDGSLMVGDGSD 303 (388)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE---------ECCEEEEEECTTSSEEEEEECC
T ss_pred eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc---------CCCceeeeecCCCCeEccCCCc
Confidence 2202 357889999999988765532 2 39999999886533221 00000 00112379999998
Q ss_pred EEEE---------c-CCeEEEEeCCCCeEEEEeccccC-----------ceeEEEEeCCCCEEEEEEc-CCCCeEEEEEC
Q 040987 623 LAVA---------A-ETVITLWDPDRNVLVAVIGETLT-----------PIMNMSFVGSSEYLVATSW-GSKPQLSVWNM 680 (762)
Q Consensus 623 la~~---------~-d~~i~iwd~~~~~~~~~l~~~~~-----------~v~~~~~s~dg~~l~s~~~-d~~~~v~vwd~ 680 (762)
|+.. . +..|++||+.+++.. .+..|.. .+.+++|+|||++|+.++. ++...|++.++
T Consensus 304 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 304 APVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp C------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 8753 3 678999999988764 4444555 5788999999999998775 55523444444
Q ss_pred C
Q 040987 681 S 681 (762)
Q Consensus 681 ~ 681 (762)
.
T Consensus 383 ~ 383 (388)
T 3pe7_A 383 P 383 (388)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=1.3e-20 Score=196.20 Aligned_cols=301 Identities=11% Similarity=0.040 Sum_probs=196.8
Q ss_pred ecCCc-ceeeeecCccc-----ccCCceeecCCCEEEEEeC--C--EEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 59 EYPAV-NSKMIRGGRSY-----VSSPPAFSNDVKRLLVCTS--N--TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 59 ~~~~~-~~~~~~~h~~~-----v~~~~~~s~dg~~la~~~~--~--~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
+..++ ....+..|... +.. ++|||||++||++++ + .|.+||+++++......+|...+..+.|+|||
T Consensus 16 ~~~~g~~~~~lt~~~~~~~~~~~~~-~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-- 92 (388)
T 3pe7_A 16 DASTGAQVTRLTPPDVTCHRNYFYQ-KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-- 92 (388)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTS-CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS--
T ss_pred cCCCCcceEEecCCcccccchhhcC-ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC--
Confidence 44443 34445555533 333 889999999999984 4 59999999999888888887777788999999
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (762)
+.|+.++.++.|.+||+.+++....+..+......
T Consensus 93 -----~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~---------------------------------------- 127 (388)
T 3pe7_A 93 -----DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGY---------------------------------------- 127 (388)
T ss_dssp -----SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE----------------------------------------
T ss_pred -----CEEEEEeCCCeEEEEECCCCcceeeeechhhcccc----------------------------------------
Confidence 67888888999999999998876554433211100
Q ss_pred CCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-----------------------eCCeEEEEEccC
Q 040987 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-----------------------KQRKLLIWKVPD 265 (762)
Q Consensus 209 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-----------------------~~~~i~iwd~~~ 265 (762)
....++||++++++. .+..|.+||+.+
T Consensus 128 ------------------------------~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 128 ------------------------------GTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp ------------------------------EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred ------------------------------cceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 011335666666521 236799999998
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecC------CeEEEEeccCCceeecccccccccccccccCCCCcc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVT------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVR 338 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (762)
++.. ....+...+..++|+| ||++|+....+ ..|.+++..++..
T Consensus 178 g~~~------~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----------------------- 228 (388)
T 3pe7_A 178 GEST------VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----------------------- 228 (388)
T ss_dssp CCEE------EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----------------------
T ss_pred CceE------EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----------------------
Confidence 8653 3445667799999999 99999877653 3677777755432
Q ss_pred cCCccccceeeeccc--cceeEEEEecCCCEEEEEecC-----CeEEEEecCCCceeccCCCCCC------eEEEEeCCC
Q 040987 339 DNDDADLCTTWHWHP--SEVSVLIFSSDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSP------LLYFTESPD 405 (762)
Q Consensus 339 ~~~~~~~~~~~~~h~--~~v~~~~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~------v~~~~~s~~ 405 (762)
..+..+. ..+..++|+|||+.|+..+.+ ..|++||+.+++...+...... ...+.|+||
T Consensus 229 --------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 229 --------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp --------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred --------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 2222233 347788999999988665432 2499999999886443222220 111368999
Q ss_pred CCeEEEE---------ecCCcEEEEEcCCceEEEEEccCCCCCC-CCCcccCceeeEEEeCCCCEEEEeec-CceEEEEE
Q 040987 406 PSLSSIS---------CADNQVHLLKMPSMEIIRSISGIKLPCP-LPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYS 474 (762)
Q Consensus 406 ~~~l~~~---------~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d 474 (762)
|+.|++. ..+..|++||+.+++.. .+..+..... ........+..++|+|||+.|++.+. ++...+|.
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 9988864 34568999999987654 3443331000 00000014678899999998887764 55555554
Q ss_pred c
Q 040987 475 L 475 (762)
Q Consensus 475 ~ 475 (762)
+
T Consensus 380 ~ 380 (388)
T 3pe7_A 380 A 380 (388)
T ss_dssp E
T ss_pred E
Confidence 3
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=2.5e-19 Score=184.23 Aligned_cols=284 Identities=11% Similarity=0.050 Sum_probs=187.5
Q ss_pred EEEEEecC--CeEEEEec--CCCceeccC----CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEccCCC
Q 040987 367 YLYSGGKE--GVLVVWQL--DTGKKKFLP----RIGSPLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISGIKL 437 (762)
Q Consensus 367 ~l~s~~~d--g~i~~wd~--~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~ 437 (762)
+++.|+.. +.|.+|++ ++++...+. .....+..++|+|||++|++++.+ .+.+|++. +++..........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 34555542 46777654 455543221 223467789999999999988877 99999997 7766543321100
Q ss_pred CCCCCCcccCceeeEEEeCCCCE--EEEee-------------cCceEEEEEcCC-CCceeeEEeecccccCCCCcceeE
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGL--VALRA-------------ENYCIHFYSLLD-DRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~--l~~~~-------------~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+.+..++|+|||++ ++++. .++.+.+|++.. ++....+......+ ...+
T Consensus 83 ---------g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~------~~~~ 147 (365)
T 1jof_A 83 ---------GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE------NTGI 147 (365)
T ss_dssp ---------SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT------TCCE
T ss_pred ---------CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCC------CCcc
Confidence 22456899999995 44543 688999999974 44433333211111 3458
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDF 579 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i 579 (762)
..++|+|||+++++++. .++.|++|++. +++... +.......| ...+..++|+|||+++++++. ++.|
T Consensus 148 ~~~~~spdG~~l~~~~~--------~~~~v~~~~~~~~g~~~~-~~~~~~~~~-g~~p~~~~~spdg~~l~v~~~~~~~v 217 (365)
T 1jof_A 148 HGMVFDPTETYLYSADL--------TANKLWTHRKLASGEVEL-VGSVDAPDP-GDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp EEEEECTTSSEEEEEET--------TTTEEEEEEECTTSCEEE-EEEEECSST-TCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred eEEEECCCCCEEEEEcC--------CCCEEEEEEECCCCCEEE-eeeEecCCC-CCCCCEeEECCCCCEEEEEECCCCeE
Confidence 89999999999887752 45799999998 565321 221111123 457899999999999888775 6889
Q ss_pred EEEEcc--cccccccccCCceeeeeecc----cCCC------CeEEEE-EcCCCcEEEEEc--CC-----eEEEEeCC-C
Q 040987 580 KVWICN--DELQQKDLQSSGWSCHAVGS----YKKK------AMTAAA-FSADGSVLAVAA--ET-----VITLWDPD-R 638 (762)
Q Consensus 580 ~iwd~~--~~~~~~~~~~~~~~~~~~~~----~~~~------~i~~~~-~s~dg~~la~~~--d~-----~i~iwd~~-~ 638 (762)
.+|++. +++..... ....... ++.. .+..++ |+|||++|++++ +. +|.+|+++ +
T Consensus 218 ~v~~~~~~~g~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 218 CEYVIDPATHMPVYTH-----HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp EEEEECTTTCCEEEEE-----EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred EEEEEeCCCCcEEEcc-----ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence 999875 34321100 0000011 1122 578999 999999988765 33 89999996 6
Q ss_pred CeEEE---EeccccCceeEEEEeC---CCCEEEEEEcC-CCCeEEEEECCCC
Q 040987 639 NVLVA---VIGETLTPIMNMSFVG---SSEYLVATSWG-SKPQLSVWNMSKL 683 (762)
Q Consensus 639 ~~~~~---~l~~~~~~v~~~~~s~---dg~~l~s~~~d-~~~~v~vwd~~~~ 683 (762)
++... ....+......++|+| ||++|++++.+ +. |.+|+++..
T Consensus 293 g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~--v~v~~~~~~ 342 (365)
T 1jof_A 293 GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW--LEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE--EEEEEEETT
T ss_pred CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe--EEEEEEchh
Confidence 66543 2333445577899999 89999999875 55 999999876
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=6e-19 Score=181.38 Aligned_cols=274 Identities=14% Similarity=0.107 Sum_probs=180.9
Q ss_pred CeEEEEec--CCcceeeee----cCcccccCCceeecCCCEEEEEeCCEEEEEEcc-cceEEeeecCC-ccceeEEEEeC
Q 040987 53 GLCRTAEY--PAVNSKMIR----GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTS-TGLQISSLEGH-KAPVTTVIVVP 124 (762)
Q Consensus 53 g~i~~~~~--~~~~~~~~~----~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~-~~~~~~~l~~h-~~~V~~v~~s~ 124 (762)
+.|.+|++ .+++...+. ++...+.. ++|+|||++|++++.+.|.+||+. ++++....... .+.+.+++|+|
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~-~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISW-MTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSE-EEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcE-EEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 56877765 344443332 23345665 999999999998884599999997 78765433211 13366799999
Q ss_pred CCCcccceeeeEEeee-------------cCCeEEEEeCC-CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 125 ASTPATKILSYCWTAS-------------LDGTIKYWDFS-VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 125 ~~~~~~~l~~~l~s~s-------------~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
||+ .+ ++++++ .++++.+|++. +|+....+..
T Consensus 93 dg~----~l-~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~----------------------------- 138 (365)
T 1jof_A 93 NTR----AI-FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN----------------------------- 138 (365)
T ss_dssp CCE----EE-EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE-----------------------------
T ss_pred CCC----EE-EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee-----------------------------
Confidence 992 11 455553 68889999986 4554332210
Q ss_pred EEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEEEEEcc-Cch
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLLIWKVP-DVE 267 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~iwd~~-~~~ 267 (762)
....+...+.+++|+|||++|+++ .++.|.+|++. +++
T Consensus 139 ---------------------------------------~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~ 179 (365)
T 1jof_A 139 ---------------------------------------YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE 179 (365)
T ss_dssp ---------------------------------------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred ---------------------------------------EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC
Confidence 000134567899999999988765 36799999998 665
Q ss_pred hhhheeeeeee-ccCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccC--CceeecccccccccccccccCCCCcccCCcc
Q 040987 268 AERVVMRKITL-HHTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFG--DRTFATNDNKMNLNLMNNEEERPGVRDNDDA 343 (762)
Q Consensus 268 ~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (762)
.. ....... .|...+..++|+|||++|++++. ++.|.+|++.. ++.....
T Consensus 180 ~~--~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~------------------------ 233 (365)
T 1jof_A 180 VE--LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH------------------------ 233 (365)
T ss_dssp EE--EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE------------------------
T ss_pred EE--EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc------------------------
Confidence 32 1111111 24567999999999999887765 68999998752 3211000
Q ss_pred ccceee----ecccc------ceeEEE-EecCCCEEEEEecCC------eEEEEecC-CCceec----cCCCCCCeEEEE
Q 040987 344 DLCTTW----HWHPS------EVSVLI-FSSDGAYLYSGGKEG------VLVVWQLD-TGKKKF----LPRIGSPLLYFT 401 (762)
Q Consensus 344 ~~~~~~----~~h~~------~v~~~~-~s~~g~~l~s~~~dg------~i~~wd~~-~~~~~~----~~~~~~~v~~~~ 401 (762)
..+..+ .+|.. .+..++ |+|||++|+++..+. .|.+|+++ +++... ...+......++
T Consensus 234 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a 313 (365)
T 1jof_A 234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA 313 (365)
T ss_dssp EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce
Confidence 000111 12232 578899 999999988776432 89999996 566542 222344566788
Q ss_pred eCC---CCCeEEEEecC-CcEEEEEcCCc
Q 040987 402 ESP---DPSLSSISCAD-NQVHLLKMPSM 426 (762)
Q Consensus 402 ~s~---~~~~l~~~~~d-~~i~i~d~~~~ 426 (762)
|+| ||++|+++..+ +.|.+|+++..
T Consensus 314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 314 VSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 999 89999998764 89999998765
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=1.3e-18 Score=177.49 Aligned_cols=300 Identities=9% Similarity=0.073 Sum_probs=204.8
Q ss_pred cCCCEEEEEe-------CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeee----------cCCeE
Q 040987 83 NDVKRLLVCT-------SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTAS----------LDGTI 145 (762)
Q Consensus 83 ~dg~~la~~~-------~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s----------~d~~i 145 (762)
+|++++.+.. |+.|.+||.++++.+.++..+..+ .++|+||| ++|++++ .+++|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg-------~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDG-------KKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTS-------SEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCC-------CEEEEEEecccccccCCCCCEE
Confidence 4677776654 469999999999999999877666 89999999 5666654 36789
Q ss_pred EEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 146 KYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
.+||..+++.+.++.....
T Consensus 84 ~v~d~~t~~~~~~i~~~~~------------------------------------------------------------- 102 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPK------------------------------------------------------------- 102 (361)
T ss_dssp EEEETTTCCEEEEEEECTT-------------------------------------------------------------
T ss_pred EEEECcCCcEEEEEEcCcc-------------------------------------------------------------
Confidence 9999998888776652210
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC-cEEEEeec
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ-RIVAAGDV 301 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~ 301 (762)
...+...+..++|+|||++|.++. ++.|.+||+.+++.. ...... .....+.+.|++ ..+++.+.
T Consensus 103 -----~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~-----~~~i~~-~~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 103 -----RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV-----EDVTAA-AGCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp -----BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE-----EEEGGG-TTEEEEEECTTSSSEEEEEET
T ss_pred -----ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE-----EEEecC-CCcceeEEcCCCCeeEEEECC
Confidence 000123567789999999997652 578999999988643 220111 122335677765 56778888
Q ss_pred CCeEEEEeccC-CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 302 TGRILIWRGFG-DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 302 dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
||.+.+|+... ++...... ....+..+...+ .+.+++++..++..+.++.+.++
T Consensus 172 dg~~~~v~~~~~g~~~~~~~------------------------~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~ 226 (361)
T 2oiz_A 172 DGGLLTINLGEDGKVASQSR------------------------SKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSA 226 (361)
T ss_dssp TSSEEEEEECTTSSEEEEEE------------------------CCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEE
T ss_pred CCcEEEEEECCCCcEeeecc------------------------ccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEE
Confidence 99999998754 32211000 001111122221 23346778788878888999999
Q ss_pred ecCCCceeccC-----C--------CCCCeEEEEeCCCCCeEEEEec-----------CCcEEEEEcCCceEEEEEccCC
Q 040987 381 QLDTGKKKFLP-----R--------IGSPLLYFTESPDPSLSSISCA-----------DNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 381 d~~~~~~~~~~-----~--------~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
|+......... . .......++++|+++.++++.. .+.|.+||+.+++.+..+..+
T Consensus 227 d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~- 305 (361)
T 2oiz_A 227 DFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR- 305 (361)
T ss_dssp ECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-
T ss_pred EecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-
Confidence 98765431100 0 0111223688999988887654 347999999999999988764
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC--CceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD--RGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
. +.+++|+|||++|++++. +.|.+||..++ +.+..+... ......++++|+|+
T Consensus 306 ----------~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~----------G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 306 ----------D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA----------AEASLQVQFHPVGG 360 (361)
T ss_dssp ----------T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS----------CSSEEEEEECCCSC
T ss_pred ----------C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC----------CCCcEEEEecCCCC
Confidence 3 689999999999998876 99999999998 666554211 34477899999986
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2.4e-18 Score=180.08 Aligned_cols=261 Identities=8% Similarity=-0.056 Sum_probs=173.6
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchh--------h--hheeeeeeeccCcCeEEEEEcCCCcEEE----Eee
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEA--------E--RVVMRKITLHHTKKLTVLAFHPTQRIVA----AGD 300 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~--------~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~----~~~ 300 (762)
...+..+++++++.+++++....+++|+...... . ..........+...|.+++|+|++++|+ +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4468999999999999977655699988642110 0 0000011224567899999999999999 788
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVV 379 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~ 379 (762)
.|+.|++||+.+...-. ............+.+|...|.+++|+|+ +++|++++.||+|++
T Consensus 116 ~d~~v~iwd~~~~~~~~-------------------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i 176 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEA-------------------KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV 176 (434)
T ss_dssp TEEEEEEEEHHHHHCTT-------------------CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCceEEEEEccccccCC-------------------cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence 89999999986431000 0000000123566789999999999998 789999999999999
Q ss_pred EecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 380 WQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 380 wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
||++++... ....|...+.+++|+|+|++|++++.|+.|++||.+ ++....+..+... ...+...+.+++|++++
T Consensus 177 wD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~---~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 177 LQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY---ESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC---CTTSCEEEEEEEEEETT
T ss_pred EEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc---CCCCceeEEEEEEecCc
Confidence 999988654 344567899999999999999999999999999998 6666666544311 01122478999999988
Q ss_pred CEEEEee-cCc------eEEEEEcCCCCc--eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 459 GLVALRA-ENY------CIHFYSLLDDRG--ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 459 ~~l~~~~-~dg------~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
.++++.+ .+| .+++|++...+. ...+......-.+......+...+..-++.+++++++.
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~ 321 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA 321 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence 8775543 332 489999986532 12222111100000000122223444578888777763
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=2e-19 Score=187.88 Aligned_cols=288 Identities=11% Similarity=-0.052 Sum_probs=194.0
Q ss_pred ceeEEEEecCCCEEEEEecC---CeEEEEecCCCceeccCCCCCCeE-EEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLL-YFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
.+..++|+|||++|+..... ..|++||+.+++...+........ .+.|+|||+.|++...++.+++||+.+++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 36778999999998877543 478999999988766555444333 37899999999999899999999999887665
Q ss_pred EEccCCCCCCCCCcccCceee-------------------EEEeCCCCEEEEe-----ecCceEEEEEcCCCCceeeEEe
Q 040987 431 SISGIKLPCPLPEEYKGLCRD-------------------IAFNHDGGLVALR-----AENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
....+. ..... +.++|+++.++.. ..+..|++||+.+++.......
T Consensus 117 ~~~~~~----------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~ 186 (396)
T 3c5m_A 117 IYTVDE----------EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD 186 (396)
T ss_dssp EEECCT----------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE
T ss_pred EEeccc----------ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC
Confidence 554332 11111 3567888877654 3567899999988764333211
Q ss_pred ecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
...+..+.|+| +++.|+..+.. ........|.+||+.++.... +. .......+..++|+|
T Consensus 187 -----------~~~~~~~~~sp~dg~~l~~~~~~---~~~~~~~~l~~~d~~~~~~~~-l~----~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 187 -----------TAWLGHPIYRPFDDSTVGFCHEG---PHDLVDARMWLVNEDGSNVRK-IK----EHAEGESCTHEFWIP 247 (396)
T ss_dssp -----------SSCEEEEEEETTEEEEEEEEECS---CSSSCSCCCEEEETTSCCCEE-SS----CCCTTEEEEEEEECT
T ss_pred -----------CcccccceECCCCCCEEEEEecC---CCCCCCceEEEEECCCCceeE-ee----ccCCCccccceEECC
Confidence 44578999999 88888777521 000011578888887654322 21 111023578899999
Q ss_pred CCCeEEEEeCC-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEEc------------
Q 040987 566 NRRAAVSSSYG-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVAA------------ 627 (762)
Q Consensus 566 d~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~~------------ 627 (762)
||++|+.++.+ +.|++||+.+++...... . .... +.|+| ||+++++++
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---------~----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---------M----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---------C----CSEE-EEEECSSSSEEEEEECCC---------
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEeee---------C----CCCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 99988877654 349999998775433220 1 1123 89999 999888742
Q ss_pred -----CCeEEEEeCCCCeEEEEeccccC-----------ceeEEEEeCCCCEEEEEEc-CCCCeEEEEECCCCcee
Q 040987 628 -----ETVITLWDPDRNVLVAVIGETLT-----------PIMNMSFVGSSEYLVATSW-GSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 628 -----d~~i~iwd~~~~~~~~~l~~~~~-----------~v~~~~~s~dg~~l~s~~~-d~~~~v~vwd~~~~~~~ 686 (762)
+..|++||+.+++.. .+..+.. .+..++|+|||+.|++++. ++...|+..++.++...
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp -CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred cccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 378999999988754 3444443 2567899999999998875 44434555566665543
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=6.7e-19 Score=183.90 Aligned_cols=321 Identities=11% Similarity=0.011 Sum_probs=202.5
Q ss_pred EecCCcce-eeeecCcc-----cccCCceeecCCCEEEEEeC----CEEEEEEcccceEEeeecCCccceeEEEEeCCCC
Q 040987 58 AEYPAVNS-KMIRGGRS-----YVSSPPAFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAST 127 (762)
Q Consensus 58 ~~~~~~~~-~~~~~h~~-----~v~~~~~~s~dg~~la~~~~----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~ 127 (762)
.|..+++. ..+..+.. .+.. ++|||||++||+..+ ..|.+||+++++......++......+.|+|||
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~-~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg- 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQ-KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE- 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTS-CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-
T ss_pred ecCCCCcceEEEecCCCCccceeeec-CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-
Confidence 35555543 33444433 3776 999999999998873 489999999888665544444334458899999
Q ss_pred cccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 128 PATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 128 ~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
++|+.++.++.|.+||+.+++.......+.... . ++. .+
T Consensus 93 ------~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~------------~g~---~l------------------- 131 (396)
T 3c5m_A 93 ------RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWK-G------------YGT---WV------------------- 131 (396)
T ss_dssp ------SEEEEEETTTEEEEEETTTCCEEEEEECCTTEE-E------------EEE---EE-------------------
T ss_pred ------CEEEEEEcCCcEEEEECCCCCcEEEEecccccC-C------------CCC---EE-------------------
Confidence 677788888899999999988665554332100 0 000 01
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE------EeCCeEEEEEccCchhhhheeeeeeeccC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI------RKQRKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~------~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
+....+....+|. ..+.++||++.++. ..+..|.+||+.+++.. ....+.
T Consensus 132 ~~~~~~~~~~~~~------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~------~~~~~~ 187 (396)
T 3c5m_A 132 ANSDCTKLVGIEI------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE------VIHQDT 187 (396)
T ss_dssp ECTTSSEEEEEEE------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE------EEEEES
T ss_pred EeccCCccccccc------------------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE------eeccCC
Confidence 1112222222322 12357899998763 34568999999887653 223566
Q ss_pred cCeEEEEEcC-CCcEEEEeecC------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc--
Q 040987 282 KKLTVLAFHP-TQRIVAAGDVT------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH-- 352 (762)
Q Consensus 282 ~~v~~~~~sp-~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-- 352 (762)
..+..+.|+| +++.|+..+.+ ..|.+|++.+++.. .+..+
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-------------------------------~l~~~~~ 236 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-------------------------------KIKEHAE 236 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-------------------------------ESSCCCT
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-------------------------------EeeccCC
Confidence 7899999999 88877776543 35888887554321 11112
Q ss_pred ccceeEEEEecCCCEEEEEecC-----CeEEEEecCCCceeccCCCCCCeEEEEeCC-CCCeEEEEe-------------
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSPLLYFTESP-DPSLSSISC------------- 413 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~------------- 413 (762)
...+..++|+|||++|+.++.+ +.|++||+.+++...+..... .. +.|+| ||++++++.
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence 2357789999999988877654 459999999887654433322 33 88999 999888754
Q ss_pred ---cCCcEEEEEcCCceEEEEEccCCCCCCC-CCcccCceeeEEEeCCCCEEEEeec-Cce--EEEEEcCCCC
Q 040987 414 ---ADNQVHLLKMPSMEIIRSISGIKLPCPL-PEEYKGLCRDIAFNHDGGLVALRAE-NYC--IHFYSLLDDR 479 (762)
Q Consensus 414 ---~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~i~d~~~~~ 479 (762)
.+..|++||+.+++.. .+..+...... .......+..++|+|||+.|++.+. ++. |+.+++.++.
T Consensus 315 ~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 2468999999887653 33332210000 0000002456789999999887764 344 5555555443
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=4.2e-18 Score=173.83 Aligned_cols=299 Identities=9% Similarity=0.039 Sum_probs=203.4
Q ss_pred CCcEEEEee------cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 292 TQRIVAAGD------VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 292 ~~~~l~~~~------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
+++++++.. .|+.|.+||..+++.. ..+..+..+ .++|+|||
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~------------------------------~~i~~g~~p--~i~~spdg 61 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL------------------------------GMVPTAFNG--HVQVSNDG 61 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEE------------------------------EEEECCEEE--EEEECTTS
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEE------------------------------EEecCCCCC--ceEECCCC
Confidence 566666543 3779999998776533 334444444 89999999
Q ss_pred CEEEEEe----------cCCeEEEEecCCCceeccCC-------CCCCeEEEEeCCCCCeEEEEec--CCcEEEEEcCCc
Q 040987 366 AYLYSGG----------KEGVLVVWQLDTGKKKFLPR-------IGSPLLYFTESPDPSLSSISCA--DNQVHLLKMPSM 426 (762)
Q Consensus 366 ~~l~s~~----------~dg~i~~wd~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~--d~~i~i~d~~~~ 426 (762)
++++++. .++.|.+||..+++...... .......++++|||++|+++.. ++.|.+||+.++
T Consensus 62 ~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~ 141 (361)
T 2oiz_A 62 KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG 141 (361)
T ss_dssp SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT
T ss_pred CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC
Confidence 9999886 35789999999887643221 2345677999999999998864 578999999999
Q ss_pred eEEEE-EccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCC-CCceeeEEeecccccCCCCcceeEEE
Q 040987 427 EIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLD-DRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 427 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
+.+.. +... ....+.+.|++ ..+++.+.||.+.+|+... ++...... ........ .. ...
T Consensus 142 ~~~~~~i~~~------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~-~~~~~~~~---~~-~~~ 204 (361)
T 2oiz_A 142 DYVEDVTAAA------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR-SKQMFSVK---DD-PIF 204 (361)
T ss_dssp EEEEEEGGGT------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE-CCCCSCTT---TS-CBC
T ss_pred cEEEEEecCC------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc-ccceEcCC---CC-ceE
Confidence 88877 5431 22335667765 5677778889999998865 33221111 00000000 11 123
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC----C---CCCceEEEEEcCCCCeEEEEeC-
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP----H---RDAGISAVAFHPNRRAAVSSSY- 575 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----h---~~~~v~~~~~spd~~~l~~~~~- 575 (762)
+.+++++..++..+ .++.+.++|+....... ........ + .......++|+||++.++++..
T Consensus 205 ~~~~~~g~~~~~~~---------~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 205 IAPALDKDKAHFVS---------YYGNVYSADFSGDEVKV-DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP 274 (361)
T ss_dssp SCCEECSSEEEEEB---------TTSEEEEEECSSSSCEE-EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred EEecccCCEEEEEe---------CCCeEEEEEecCCCcee-cccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence 34467787777776 66789999987654321 11100000 0 0111223789999888776643
Q ss_pred ----------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCC--eEEE
Q 040987 576 ----------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRN--VLVA 643 (762)
Q Consensus 576 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~--~~~~ 643 (762)
.+.|.+||+.+++.+..++ .+. +.+++|+|||++|++++++.|.+||.+++ +.+.
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~-----------~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIP-----------GRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLR 341 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEE-----------CTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEE
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEe-----------cCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeE
Confidence 3479999999988766552 223 88999999999999887799999999999 9999
Q ss_pred EeccccCceeEEEEeCCCC
Q 040987 644 VIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~ 662 (762)
.+..+...-..++++|||+
T Consensus 342 ~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 342 TIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTSCSSEEEEEECCCSC
T ss_pred EeccCCCCcEEEEecCCCC
Confidence 9866666778899999986
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.82 E-value=4.7e-17 Score=174.11 Aligned_cols=346 Identities=13% Similarity=0.042 Sum_probs=231.7
Q ss_pred CCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEE
Q 040987 291 PTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYS 370 (762)
Q Consensus 291 p~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 370 (762)
|.+.++++...++.|.++|..+++.+. .+.. ...+..+.|+|||+++++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~------------------------------~i~~-g~~p~~v~~SpDGr~lyv 213 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKT------------------------------VLDT-GYAVHISRLSASGRYLFV 213 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEE------------------------------EEEC-SSCEEEEEECTTSCEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEE------------------------------EEeC-CCCccceEECCCCCEEEE
Confidence 445566777789999999998775442 3322 234668999999999999
Q ss_pred EecCCeEEEEecC--CCceeccCCCCCCeEEEEeC----CCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 371 GGKEGVLVVWQLD--TGKKKFLPRIGSPLLYFTES----PDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 371 ~~~dg~i~~wd~~--~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
++.++.|.+||+. +++.......+.....++++ |||++++++.. ++.+.++|..+.+.+..+...........
T Consensus 214 ~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 214 IGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp EETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred EcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence 9999999999995 66665444445567899999 69999888765 58999999999999888764321110000
Q ss_pred cc-cCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 444 EY-KGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 444 ~~-~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
.+ +..+..+..++++..+ +.....|.|.++|....+.+....... .....++.|+|+|++++++..
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~---------~~~~~d~~~~pdgr~~~va~~--- 361 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA---------ERFLHDGGLDGSHRYFITAAN--- 361 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC---------CSSEEEEEECTTSCEEEEEEG---
T ss_pred ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec---------cccccCceECCCCCEEEEEeC---
Confidence 01 1256788888876654 444566999999998765332222211 233668899999999988774
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE-EEEe-CCCcEEEEEcccccccccccCCcee
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA-VSSS-YGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l-~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.++.|.++|..+++....+..--..+| .+.-..+ ++|++..+ +++. .++.|.++|..+.+.. ...|.
T Consensus 362 -----~sn~V~ViD~~t~kl~~~i~vgg~~Ph-pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~----~~~~k 430 (567)
T 1qks_A 362 -----ARNKLVVIDTKEGKLVAIEDTGGQTPH-PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP----DNAWK 430 (567)
T ss_dssp -----GGTEEEEEETTTTEEEEEEECSSSSBC-CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT----TTBTS
T ss_pred -----CCCeEEEEECCCCcEEEEEeccCcCCC-Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc----cccCE
Confidence 678999999999876555432012355 3322222 68875544 4443 4689999999873211 11233
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc----C----CeEEEEeCCCC-----e-EEEEec--------cccCceeEEEE
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA----E----TVITLWDPDRN-----V-LVAVIG--------ETLTPIMNMSF 657 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~----d----~~i~iwd~~~~-----~-~~~~l~--------~~~~~v~~~~~ 657 (762)
...........-..+..+|++++|.+.. | .+|.++|+.+. . ....+. .....+..+.|
T Consensus 431 vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (567)
T 1qks_A 431 ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEF 510 (567)
T ss_dssp EEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEE
T ss_pred EEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeE
Confidence 3222222233334578899999998865 2 49999999877 2 112331 12346899999
Q ss_pred eCCCCEEEEEEcC---CCCeEEEEECCCCceeeEEE
Q 040987 658 VGSSEYLVATSWG---SKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 658 s~dg~~l~s~~~d---~~~~v~vwd~~~~~~~~~~~ 690 (762)
+|||+.+..+... ..+.|.|+|.+++++...+.
T Consensus 511 ~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 511 NKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 9999998887431 12349999999999887765
No 171
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=4.3e-18 Score=178.06 Aligned_cols=271 Identities=12% Similarity=0.084 Sum_probs=177.7
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
..++.+++++++.++++++.++ +++|+........... .....+. .... .....+...|.+++|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~-----------~~~~~~~---~~~~-~~~~~~~~~v~~l~~ 100 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG-----------DDPNKIV---DKVQ-GLLVPMKFPIHHLAL 100 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT-----------CCTTCEE---ECCC-CEEECCSSCEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc-----------cCccccc---ccCc-cccccCCCcccEEEE
Confidence 4678999999999999998888 8998863221100000 0000000 0000 111235678999999
Q ss_pred ecCCCEEE----EEecCCeEEEEecCCC--------c----eeccCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcC
Q 040987 362 SSDGAYLY----SGGKEGVLVVWQLDTG--------K----KKFLPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 362 s~~g~~l~----s~~~dg~i~~wd~~~~--------~----~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~ 424 (762)
+|+|++|+ +++.|+.|++||+.++ + ......|...|.+++|+|+ +.+|++++.|+.|++||++
T Consensus 101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~ 180 (434)
T 2oit_A 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180 (434)
T ss_dssp CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES
T ss_pred cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC
Confidence 99999999 7888999999998765 1 1234557889999999998 7899999999999999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
++.......+|. ..+.+++|+|+|++|++++.||.|++||.+ ++....+..... ....|...+.++
T Consensus 181 ~~~~~~~~~~~~----------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~---~~~~~~~~v~~v 246 (434)
T 2oit_A 181 ETVKVCATLPST----------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF---YESDHPVRVLDV 246 (434)
T ss_dssp SSEEEEEEECGG----------GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT---CCTTSCEEEEEE
T ss_pred CCcceeeccCCC----------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc---cCCCCceeEEEE
Confidence 987766666555 689999999999999999999999999998 443333322111 011224589999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc--eeEEEEEeec-----CCCCCceEEEEEcCCCCeEEEEeC-C
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK--EFTLSTIVYE-----PHRDAGISAVAFHPNRRAAVSSSY-G 576 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~-----~h~~~~v~~~~~spd~~~l~~~~~-d 576 (762)
+|++++.++++.+.. +........+++|++..... ...+...... +. ...-..+.+-++.+++++++. .
T Consensus 247 ~w~~~~~~l~~~~~~--dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~l~dw~l~~v~s~~s 323 (434)
T 2oit_A 247 LWIGTYVFAIVYAAA--DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE-RQHHYYLSYIEEWDLVLAASAAS 323 (434)
T ss_dssp EEEETTEEEEEEEET--TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSS-SCCCEEEEEEGGGTEEEEEETTC
T ss_pred EEecCceEEEEEccC--CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCC-cCcceeeehhccCCEEEEecCCC
Confidence 999999888765521 00011224699999986532 1222211110 22 222223344466676666554 4
Q ss_pred CcEEEEEcc
Q 040987 577 GDFKVWICN 585 (762)
Q Consensus 577 g~i~iwd~~ 585 (762)
+.|.+....
T Consensus 324 ~dv~vl~~~ 332 (434)
T 2oit_A 324 TEVSILARQ 332 (434)
T ss_dssp SBCEEEEEC
T ss_pred CceeEEEec
Confidence 456666643
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=7.8e-18 Score=188.49 Aligned_cols=316 Identities=13% Similarity=0.012 Sum_probs=199.5
Q ss_pred ceeeeccccceeEEEEecCCCEEEEE--ecCCeEEEEec-CCCceeccCCCCCCeE---------EEEeC--CCCCe-EE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSG--GKEGVLVVWQL-DTGKKKFLPRIGSPLL---------YFTES--PDPSL-SS 410 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~--~~dg~i~~wd~-~~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~ 410 (762)
...+.+|...+..++|++++-++++. +.++...+|.. ..++...+..+...+. ...|+ |||+. |+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 34567789999999999876556665 45788899984 4455555555555544 45554 99998 77
Q ss_pred EEec-CCcEEEEEcC--C-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----------ceEEEEEcC
Q 040987 411 ISCA-DNQVHLLKMP--S-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----------YCIHFYSLL 476 (762)
Q Consensus 411 ~~~~-d~~i~i~d~~--~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~i~d~~ 476 (762)
.+.. +..|+++++. . ++ ...+..... ..+...+..++|+|||+.|++++.+ ..|++||+.
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-----VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC-CEECSCCCC-----STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EEECCCCeEEEEcCCCCCCCC-CEeccCCcc-----CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 6654 4567777765 2 33 344443110 0012567899999999999998876 589999998
Q ss_pred C------CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCC--ceeEEEE
Q 040987 477 D------DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQN--KEFTLST 547 (762)
Q Consensus 477 ~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~--~~~~~~~ 547 (762)
+ +.. ..+. ..+ ...+..++|||||++|+..+.+...... ....|++||+. ++. ....+
T Consensus 170 ~~~~~~~~~~-~~l~---~~~------~~~~~~~~~SpDG~~la~~~~~~~~~~~-~~~~i~~~d~~~~g~~~~~~~l-- 236 (662)
T 3azo_A 170 GSAAADRSAV-RELS---DDA------HRFVTGPRLSPDGRQAVWLAWDHPRMPW-EGTELKTARVTEDGRFADTRTL-- 236 (662)
T ss_dssp STTTTCGGGS-EESS---CSC------SSEECCCEECTTSSEEEEEEECTTCCTT-TCEEEEEEEECTTSCEEEEEEE--
T ss_pred CCccccCCce-eEEE---ecC------CCcccCceECCCCCEEEEEECCCCCCCC-CCcEEEEEEECCCCcccccEEe--
Confidence 7 332 2221 011 3467788999999999988732100000 12589999998 452 22222
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCC--cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGG--DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
..+| ...+..++|+|||+++++++.++ .|++||..+++.......... .....-...+..++|+|+++++++
T Consensus 237 --~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 237 --LGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE---FAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp --EEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB---SSCCCCSTTCCSEEECTTSCEEEE
T ss_pred --CCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc---ccCccccccCceEeEeCCCEEEEE
Confidence 2344 57889999999999887887788 566666655554333210000 000000011567899999999988
Q ss_pred EcCCeEEEE--eCCCCeEEEEeccccCceeEE-EEeCCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 626 AAETVITLW--DPDRNVLVAVIGETLTPIMNM-SFVGSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 626 ~~d~~i~iw--d~~~~~~~~~l~~~~~~v~~~-~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
++++.++|| |..+++ +..+..|...+..+ +++++.-.+++++.+....|.+||+.+++...
T Consensus 311 ~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 311 HGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 865777777 766666 56777777777776 55444333444555544347777887887654
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=1.5e-17 Score=186.12 Aligned_cols=298 Identities=13% Similarity=0.015 Sum_probs=193.9
Q ss_pred eeeccCcCeEEEEEcCCCcEEEEe--ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 276 ITLHHTKKLTVLAFHPTQRIVAAG--DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 276 ~~~~~~~~v~~~~~sp~~~~l~~~--~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
.+.+|...+..++|++++-+++.. +.++...||....+.. ...+..|.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------~~~l~~~~ 67 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA------------------------------EESALPAP 67 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC------------------------------EEESSCTT
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC------------------------------cceeCCCC
Confidence 345788899999999887666666 5578899998532211 12233333
Q ss_pred ccee---------EEEEe--cCCCE-EEEEec-CCeEEEEecC--C-CceeccCC-----CCCCeEEEEeCCCCCeEEEE
Q 040987 354 SEVS---------VLIFS--SDGAY-LYSGGK-EGVLVVWQLD--T-GKKKFLPR-----IGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 354 ~~v~---------~~~~s--~~g~~-l~s~~~-dg~i~~wd~~--~-~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~ 412 (762)
..+. ...|+ |||++ |+.++. +..|+++++. + ++...+.. +...+..++|+|||+.|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~ 147 (662)
T 3azo_A 68 WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCM 147 (662)
T ss_dssp CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEE
T ss_pred ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEE
Confidence 3333 45565 99998 776654 5678888877 4 55555555 45578899999999999988
Q ss_pred ecC----------CcEEEEEcCC------ceEEEEEc-cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC--------
Q 040987 413 CAD----------NQVHLLKMPS------MEIIRSIS-GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-------- 467 (762)
Q Consensus 413 ~~d----------~~i~i~d~~~------~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------- 467 (762)
+.+ ..|++||+.+ ++.. .+. .+. ..+..++|+|||++|++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~----------~~~~~~~~SpDG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 148 AEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAH----------RFVTGPRLSPDGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp EEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCS----------SEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred EecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCC----------CcccCceECCCCCEEEEEECCCCCCCCCC
Confidence 776 5899999987 5543 333 322 567889999999999988754
Q ss_pred ceEEEEEcC-CCC--ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee--EEEEEEecCCCce
Q 040987 468 YCIHFYSLL-DDR--GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV--CLKFWVSGTQNKE 542 (762)
Q Consensus 468 g~i~i~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~ 542 (762)
..|++||+. ++. ....+.. .+ ...+..++|+|||+++++++ .++ .|.+||..+++..
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~---~~------~~~~~~~~~spdg~l~~~~~---------~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLG---GP------EEAIAQAEWAPDGSLIVATD---------RTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEE---ET------TBCEEEEEECTTSCEEEEEC---------TTSSCEEEEECTTTCCEE
T ss_pred cEEEEEEECCCCcccccEEeCC---CC------CceEcceEECCCCeEEEEEC---------CCCCeEEEEEECCCCcee
Confidence 489999998 452 2222221 11 35688999999999666665 445 6677776555432
Q ss_pred eEEEEEeecCCCCCc--------eEEEEEcCCCCeEEEEeCCCcEEEE--EcccccccccccCCceeeeeecccCCCCeE
Q 040987 543 FTLSTIVYEPHRDAG--------ISAVAFHPNRRAAVSSSYGGDFKVW--ICNDELQQKDLQSSGWSCHAVGSYKKKAMT 612 (762)
Q Consensus 543 ~~~~~~~~~~h~~~~--------v~~~~~spd~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 612 (762)
... ..+ ... +..++|+|+++++++++. +.++|| |+.+++. ..+ ..+...+.
T Consensus 279 ~l~-----~~~-~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~-~~l-----------~~~~~~~~ 339 (662)
T 3azo_A 279 QLC-----RRE-EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL-VDA-----------AGPWTEWA 339 (662)
T ss_dssp ESS-----CCS-SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE-EEC-----------CSSCCEEE
T ss_pred ecc-----ccc-ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE-EEe-----------cCCCCeEE
Confidence 211 122 211 567899999999999998 999999 5444442 222 23455566
Q ss_pred EEEEcCCCcEEE--EEc-C--CeEEEEeCCCCeEEEEeccccCce
Q 040987 613 AAAFSADGSVLA--VAA-E--TVITLWDPDRNVLVAVIGETLTPI 652 (762)
Q Consensus 613 ~~~~s~dg~~la--~~~-d--~~i~iwd~~~~~~~~~l~~~~~~v 652 (762)
.+ ++++++.++ +++ + ..|+++|+.+++.......+...+
T Consensus 340 ~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~ 383 (662)
T 3azo_A 340 AT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPV 383 (662)
T ss_dssp EE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSS
T ss_pred EE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccC
Confidence 55 144554433 334 4 367777888887655444444333
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.79 E-value=1.7e-15 Score=162.18 Aligned_cols=330 Identities=11% Similarity=0.071 Sum_probs=224.5
Q ss_pred ceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc--cceEEeeecCCcccee
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--TGLQISSLEGHKAPVT 118 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~--~~~~~~~l~~h~~~V~ 118 (762)
...++++...++.|.++|..+++.+........+.. ++|||||++|.+++ ++.|.+||+. +++.+.++.... ...
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~-v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~ 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EAR 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccc-eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCc
Confidence 456777888899999999999877754444445555 99999999999888 6999999996 888888887544 467
Q ss_pred EEEEe----CCCCcccceeeeEEee-ecCCeEEEEeCCCcceEEEEEecc------------ceEEEeecccccCCcccC
Q 040987 119 TVIVV----PASTPATKILSYCWTA-SLDGTIKYWDFSVPELLKTIDVKF------------SIFSMVIPSLLRQPAQSD 181 (762)
Q Consensus 119 ~v~~s----~~~~~~~~l~~~l~s~-s~d~~i~vWd~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~ 181 (762)
.++|+ ||| ++++++ ..+++|.|+|..+.+.++.+.... .+..+.+ +++
T Consensus 244 ~ia~s~~~~pDG-------k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~--------s~~ 308 (567)
T 1qks_A 244 SIETSKMEGWED-------KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA--------SHY 308 (567)
T ss_dssp EEEECCSTTCTT-------TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE--------CSS
T ss_pred eeEEccccCCCC-------CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE--------cCC
Confidence 99999 699 455554 456999999999999998876432 1222221 111
Q ss_pred CCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEE
Q 040987 182 EKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLL 259 (762)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~ 259 (762)
. + ..+ +.....|.|.++|....+...............+.|+|||+++.++ .++.|.
T Consensus 309 ~--~--~~v-----------------v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ 367 (567)
T 1qks_A 309 R--P--EFI-----------------VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 367 (567)
T ss_dssp S--S--EEE-----------------EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred C--C--EEE-----------------EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEE
Confidence 1 1 111 1224678999999877654433333444567789999999998644 578999
Q ss_pred EEEccCchhhhheeeee--eeccCcCeEEEEEcCCCcEE-EEee-cCCeEEEEeccCCceeecccccccccccccccCCC
Q 040987 260 IWKVPDVEAERVVMRKI--TLHHTKKLTVLAFHPTQRIV-AAGD-VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERP 335 (762)
Q Consensus 260 iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l-~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (762)
++|+.+++.. ..... ...|.+.-..+ ++|++..+ +++. .++.|.++|......-
T Consensus 368 ViD~~t~kl~--~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~------------------- 425 (567)
T 1qks_A 368 VIDTKEGKLV--AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP------------------- 425 (567)
T ss_dssp EEETTTTEEE--EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT-------------------
T ss_pred EEECCCCcEE--EEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc-------------------
Confidence 9999988753 11111 11343222222 68875544 4442 4689999998653210
Q ss_pred CcccCCccccceeeeccccceeEEEEecCCCEEEEEec-------CCeEEEEecCCC-----c----eec------cCCC
Q 040987 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-------EGVLVVWQLDTG-----K----KKF------LPRI 393 (762)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-------dg~i~~wd~~~~-----~----~~~------~~~~ 393 (762)
...++.++.+......-..+..+|+++++++... ..+|.++|+.+. . .+. +...
T Consensus 426 ----~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 501 (567)
T 1qks_A 426 ----DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG 501 (567)
T ss_dssp ----TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS
T ss_pred ----cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC
Confidence 0112334555443333345778999999988653 358999999877 2 111 1123
Q ss_pred CCCeEEEEeCCCCCeEEEEec-----CCcEEEEEcCCceEEEEEccC
Q 040987 394 GSPLLYFTESPDPSLSSISCA-----DNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~ 435 (762)
...+..+.|+++|+.+.++.. ++.|.++|..+++++..+...
T Consensus 502 ~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 548 (567)
T 1qks_A 502 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 548 (567)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCC
Confidence 557899999999999888743 689999999999999888753
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=6.2e-16 Score=157.97 Aligned_cols=266 Identities=11% Similarity=0.067 Sum_probs=176.9
Q ss_pred ceeEEEEecCCCEEEEEe---------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---C--cEEE
Q 040987 355 EVSVLIFSSDGAYLYSGG---------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---N--QVHL 420 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~--~i~i 420 (762)
.+..+++ ||++++... .++.|++||+.+++...+ ..+..++|||||++|++...+ + .|++
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 4566777 888887652 256799999998877555 567889999999999987654 2 4888
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------------------------ceEEEE
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------------------------YCIHFY 473 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------------------g~i~i~ 473 (762)
|++.+++....... . . +..++|+|||+.|++++.+ ..|++|
T Consensus 90 ~~~~~g~~~~l~~~-~----------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (347)
T 2gop_A 90 ADLETLSSKKILEA-K----------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF 157 (347)
T ss_dssp EETTTTEEEEEEEE-S----------E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred EECCCCceEEEEcC-C----------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence 89888776554432 1 3 7899999999999888642 579999
Q ss_pred EcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCC
Q 040987 474 SLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH 553 (762)
Q Consensus 474 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h 553 (762)
|+.+++.+..+.. . .+..++|+||| +++++..+...........|.++| +++ ...+.. +
T Consensus 158 d~~~~~~~~~l~~-~-----------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~-----~ 216 (347)
T 2gop_A 158 DTESEEVIEEFEK-P-----------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFE-----K 216 (347)
T ss_dssp ETTTTEEEEEEEE-E-----------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEE-----E
T ss_pred ECCCCeEEeeecC-C-----------CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEecc-----C
Confidence 9987765333332 1 25678999999 666664210000000023455555 332 333321 1
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCC--------cEEEEEcccccccccccCCceeeeeecccCCCCeEE-EEEcCCCcEEE
Q 040987 554 RDAGISAVAFHPNRRAAVSSSYGG--------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA-AAFSADGSVLA 624 (762)
Q Consensus 554 ~~~~v~~~~~spd~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~dg~~la 624 (762)
..+..+ +|||++|+.++.++ .|.+|| +++..... ..+...+.. +.|+ || +++
T Consensus 217 --~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~-----------~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 217 --VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL-----------DEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp --ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS-----------TTCCSEEEEEEEET-TE-EEE
T ss_pred --cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc-----------ccCCcccCCccEEc-Cc-EEE
Confidence 233343 99999998887543 577777 44332222 234567776 9999 88 888
Q ss_pred EEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 625 VAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 625 ~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+++ ++.++|| +.+++....+. +...|.+++|+| .++++++.++. ...+|.++ ++
T Consensus 278 ~~~~~~~~~l~-~~~g~~~~~~~-~~~~v~~~~~s~--~~~~~~~~~~~-~~~l~~~~-g~ 332 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIKPIAK-GRHWIMGFDVDE--IVVYLKETATR-LRELFTWD-GE 332 (347)
T ss_dssp EEEETTEEEEE-EESSSEEEEEC-SSSEEEEEEESS--SEEEEEECSSS-CCEEEEES-SS
T ss_pred EEecCCcEEEE-EcCCceEEEec-CCCeEEeeeeeC--cEEEEEcCCCC-hHHheEeC-Cc
Confidence 877 8999999 87776654443 567799999999 67777777765 12666665 44
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=6.7e-16 Score=156.67 Aligned_cols=282 Identities=10% Similarity=0.030 Sum_probs=187.5
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
.|.++.|++++..++..+.++.++.|. ......+..+...+.+++|+++|++++++..++.|.+||..+++.......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 84 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT--AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS 84 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE--CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred ccceeeecCCccceeEEeecccCcccc--cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence 466778888887777777788888882 222233445556778999999999777788889999999988776654433
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
+. ..+.+++++|+++++++...+ +.|.+||..++.....+... . ....+..++++|+|
T Consensus 85 ~~----------~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~------~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 85 HK----------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--S------TAYCIDDMVFDSKG 146 (333)
T ss_dssp SS----------SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--S------SCCCEEEEEECTTS
T ss_pred CC----------CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--c------cCCcccceEECCCC
Confidence 22 578999999999988777666 68999998876543222110 0 13468899999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEccc-cc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICND-EL 588 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~-~~ 588 (762)
+++++..... .....+.|..++..+++... +. .+ ...+..++|+||++.|+.+ +.++.|.+||+.+ +.
T Consensus 147 ~l~v~~~~~~---~~~~~~~l~~~~~~~~~~~~-~~-----~~-~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 147 GFYFTDFRGY---STNPLGGVYYVSPDFRTVTP-II-----QN-ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp CEEEEECCCB---TTBCCEEEEEECTTSCCEEE-EE-----EE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred CEEEEecccc---ccCCCceEEEEeCCCCEEEE-ee-----cC-CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 8877664100 00013556666655443322 21 11 3357889999999866544 4578899999964 22
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccC------ceeEEEEeCCC
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLT------PIMNMSFVGSS 661 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~------~v~~~~~s~dg 661 (762)
....+. -........ ...+..++++++|+++++.. ++.|.+||.+ ++.+..+..+.. .+.+++|+||+
T Consensus 217 ~~~~~~---~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 217 TIQPFG---ATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp SEEEEE---EEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred Cccccc---ceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCC
Confidence 221110 000001111 14677899999999877765 7999999984 666666654432 58899999998
Q ss_pred CEEEEEEcCC
Q 040987 662 EYLVATSWGS 671 (762)
Q Consensus 662 ~~l~s~~~d~ 671 (762)
+.|+.++.++
T Consensus 292 ~~L~v~~~~g 301 (333)
T 2dg1_A 292 NQLIICSNDI 301 (333)
T ss_dssp CEEEEEEECG
T ss_pred CEEEEEeCcc
Confidence 8887766653
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=1.6e-15 Score=154.90 Aligned_cols=275 Identities=12% Similarity=0.044 Sum_probs=179.7
Q ss_pred cCeEEEEEcCCCcEEEEee---------cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 282 KKLTVLAFHPTQRIVAAGD---------VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~---------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
..+..+++ ||++++... .++.|.+|++.+++.. .+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------------------------------~l--- 58 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-------------------------------FI--- 58 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-------------------------------EE---
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-------------------------------Ec---
Confidence 45667777 888887642 2567999998766421 22
Q ss_pred ccceeEEEEecCCCEEEEEecC---C--eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC------------
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKE---G--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD------------ 415 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~d---g--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------ 415 (762)
..+..++|+|||++|+.++.+ + .|++||+.+++...+..... +..++|+|||+.|++++.+
T Consensus 59 -~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 -ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp -ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred -ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457889999999999987754 2 48888999888765555555 8999999999999887642
Q ss_pred ---------------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------ceEE
Q 040987 416 ---------------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------YCIH 471 (762)
Q Consensus 416 ---------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~ 471 (762)
..|++||+.+++.+..+.. . .+..++|+||| +++++..+ ..|+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-----------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~ 203 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-----------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIY 203 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-----------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-----------CcccccCCCCe-EEEEEecccccccccccccEE
Confidence 5689999998877455443 1 34678999999 77666543 2455
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
++| ++ ....+... ..+.. ++|||++|+..+..... +......|.+|| +++. ..+ ..
T Consensus 204 ~~d--~~-~~~~l~~~-----------~~~~~--~spdg~~l~~~~~~~~~-~~~~~~~l~~~d--~~~~-~~l----~~ 259 (347)
T 2gop_A 204 IWE--DG-KEEKMFEK-----------VSFYA--VDSDGERILLYGKPEKK-YMSEHNKLYIYD--GKEV-MGI----LD 259 (347)
T ss_dssp EEE--TT-EEEEEEEE-----------ESEEE--EEECSSCEEEEECCSSS-CCCSSCEEEEEC--SSCE-EES----ST
T ss_pred EeC--CC-ceEEeccC-----------cceee--ECCCCCEEEEEEccccC-CccccceEEEEC--CCce-Eec----cc
Confidence 555 33 22222211 11233 39999999887632100 000235788888 4332 222 23
Q ss_pred CCCCCceEE-EEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC
Q 040987 552 PHRDAGISA-VAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET 629 (762)
Q Consensus 552 ~h~~~~v~~-~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~ 629 (762)
++ ...+.. +.|+ |+ ++++++.++.++|| +.+++..... .+...|.+++|+| .++++++ ++
T Consensus 260 ~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~------------~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 260 EV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA------------KGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp TC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE------------CSSSEEEEEEESS--SEEEEEECSS
T ss_pred cC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe------------cCCCeEEeeeeeC--cEEEEEcCCC
Confidence 45 667886 9999 88 88899999999999 8744332211 2367789999999 5666665 54
Q ss_pred eE-EEEeCCCCeEEEEeccccCc
Q 040987 630 VI-TLWDPDRNVLVAVIGETLTP 651 (762)
Q Consensus 630 ~i-~iwd~~~~~~~~~l~~~~~~ 651 (762)
.. .||.++ ++ ...+..|...
T Consensus 322 ~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 322 RLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp SCCEEEEES-SS-EEECCCTTST
T ss_pred ChHHheEeC-Cc-EEEeccccHh
Confidence 33 566555 54 3456656543
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=2.5e-15 Score=168.94 Aligned_cols=286 Identities=12% Similarity=0.038 Sum_probs=192.8
Q ss_pred cCCCEEEEEecC-----CeEEEEecCCCceecc------C-CCCCCeEEEEeCCCCCeEEEEecCC-----cEEEEEcCC
Q 040987 363 SDGAYLYSGGKE-----GVLVVWQLDTGKKKFL------P-RIGSPLLYFTESPDPSLSSISCADN-----QVHLLKMPS 425 (762)
Q Consensus 363 ~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~------~-~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~i~d~~~ 425 (762)
|+|++++....+ +.+++.+...++...+ . .+...+..++|||||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 889888765533 2456666555544321 1 1223578899999999999876543 899999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce----------------EEEEEcCCCCceeeEEeecc
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC----------------IHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~~~ 489 (762)
++........ ..+..++|+|||+.|+.++.++. |++|++.++.....+.....
T Consensus 161 g~~~~~~~~~-----------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 161 AKELPDVLER-----------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP 229 (710)
T ss_dssp TEEEEEEEEE-----------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred CCCCcccccC-----------cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC
Confidence 9877643221 23567999999999999887765 99999987754322322211
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC------CC-ceeEEEEEeecCCCCCceEEEE
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT------QN-KEFTLSTIVYEPHRDAGISAVA 562 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~------~~-~~~~~~~~~~~~h~~~~v~~~~ 562 (762)
.+ ...+..+.|+|||++|+..+.. +...+..|++||+.+ +. ....+ ..+ ...+.. .
T Consensus 230 ~~------~~~~~~~~~SpDg~~l~~~~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~l-----~~~-~~~~~~-~ 292 (710)
T 2xdw_A 230 DE------PKWMGGAELSDDGRYVLLSIRE----GCDPVNRLWYCDLQQESNGITGILKWVKL-----IDN-FEGEYD-Y 292 (710)
T ss_dssp TC------TTCEEEEEECTTSCEEEEEEEC----SSSSCCEEEEEEGGGSSSSSCSSCCCEEE-----ECS-SSSCEE-E
T ss_pred CC------CeEEEEEEEcCCCCEEEEEEEc----cCCCccEEEEEECcccccccCCccceEEe-----eCC-CCcEEE-E
Confidence 11 3447789999999999988631 100157899999986 43 23333 234 444444 5
Q ss_pred EcCCCCeEEEEeCCC----cEEEEEcccccccccccCCceeeeeecccCC-CCeEEEEEcCCCcEEEEEc-CC--eEEEE
Q 040987 563 FHPNRRAAVSSSYGG----DFKVWICNDELQQKDLQSSGWSCHAVGSYKK-KAMTAAAFSADGSVLAVAA-ET--VITLW 634 (762)
Q Consensus 563 ~spd~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~la~~~-d~--~i~iw 634 (762)
|+|+|+.|+..+..+ .|.+||+.++... .|... ..... ..+..++|++++.++++.. |+ .|++|
T Consensus 293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------~~~~l--~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------KWKVL--VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (710)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGG------GCEEE--ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------cceec--cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence 889999888776533 5999998876421 01111 11112 3678899998888888776 76 46777
Q ss_pred eCCCCeEEEEeccccCceeEEEEeCCCCEEEEE--EcCCCCeEEEEECCCCc
Q 040987 635 DPDRNVLVAVIGETLTPIMNMSFVGSSEYLVAT--SWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 635 d~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~--~~d~~~~v~vwd~~~~~ 684 (762)
++.+|+.+..+..+.+.+..+.++|+++.|+.. +....+.|+.||+.+++
T Consensus 365 ~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 887888778887777778999999999876654 32233459999999987
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=1.8e-15 Score=153.41 Aligned_cols=278 Identities=11% Similarity=0.017 Sum_probs=188.8
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
..|.+++|++++..++..+.++.++.|.. +....+..+...+.+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 52 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA---------------------------------EPWLEISKKGLQLEGLNF 52 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---------------------------------EEEEEEESSCCCEEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccccc---------------------------------ceeEEEeccCccccCcEE
Confidence 35778889999888877777888888832 122445556667789999
Q ss_pred ecCCCEEEEEecCCeEEEEecCCCceeccC-CCCCCeEEEEeCCCCCeEEEEecC----CcEEEEEcCCceEEEEEccCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLDTGKKKFLP-RIGSPLLYFTESPDPSLSSISCAD----NQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~ 436 (762)
+++|+.++++..++.|.+||.++++...+. .....+.+++++++|+++++...+ +.|.+||..++.....+....
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 132 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS 132 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc
Confidence 999997778888899999999988875433 456789999999999887776655 689999998876554443211
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
....+..++++|+|+++++... .+.|..+|..+++.. .+... ...+..++|+|+|
T Consensus 133 --------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~----------~~~~~~i~~~~dg 193 (333)
T 2dg1_A 133 --------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQN----------ISVANGIALSTDE 193 (333)
T ss_dssp --------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEE----------ESSEEEEEECTTS
T ss_pred --------cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecC----------CCcccceEECCCC
Confidence 1146789999999987776653 356777776554332 22111 2236889999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEe---ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIV---YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~---~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
+.|+.+.. .++.|.+|+..+ +.....+.... ..+ ...+..++++++|+++++...++.|.+||..
T Consensus 194 ~~l~v~~~--------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~--~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~- 262 (333)
T 2dg1_A 194 KVLWVTET--------TANRLHRIALEDDGVTIQPFGATIPYYFTG--HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR- 262 (333)
T ss_dssp SEEEEEEG--------GGTEEEEEEECTTSSSEEEEEEEEEEECCS--SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-
T ss_pred CEEEEEeC--------CCCeEEEEEecCCCcCcccccceEEEecCC--CCCCCceEECCCCCEEEEEcCCCEEEEECCC-
Confidence 97665542 567999999974 33332221111 112 1367889999999988888778899999984
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
++....+. ......++...+.+++|+||++.|++++
T Consensus 263 g~~~~~~~-----~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 263 GYPIGQIL-----IPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp SCEEEEEE-----CTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCEEEEEE-----cCCCccccccCcceEEECCCCCEEEEEe
Confidence 33322221 0000001122688999999987776654
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.5e-15 Score=153.32 Aligned_cols=257 Identities=8% Similarity=0.048 Sum_probs=180.8
Q ss_pred CCCeEEEEeCCCCCeEEEEecC------------------------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCce
Q 040987 394 GSPLLYFTESPDPSLSSISCAD------------------------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~d------------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
-..+..++++|+|+++++...+ +.|.+||..+++....+.... -...
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---------~~~p 93 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL---------FYLP 93 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT---------CSSE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc---------cCCc
Confidence 3568899999999888777666 479999999888877654221 1467
Q ss_pred eeEEEeCCCCEEEEeecCceEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCc
Q 040987 450 RDIAFNHDGGLVALRAENYCIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~ 527 (762)
..++++|+|+++++...++.|++||..... .+..+..... ......+...+..++++| +++++++.+. .
T Consensus 94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-~g~~~~~~~~P~~ia~~~~~g~lyv~d~~--------~ 164 (329)
T 3fvz_A 94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-PGSDQNHFCQPTDVAVEPSTGAVFVSDGY--------C 164 (329)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB-CCCSTTCCSSEEEEEECTTTCCEEEEECS--------S
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC-CCCCccccCCCcEEEEeCCCCeEEEEeCC--------C
Confidence 899999999988888888999999986542 3333321100 000011134588999999 7777777631 4
Q ss_pred eeEEEEEEecCCCceeEEEEEee-----cCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccccccccccCCceeee
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVY-----EPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCH 601 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~-----~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 601 (762)
++.|++|+ ..+.....+...-. .++ ......++++|+ +.++++...++.|++||..+++....+.
T Consensus 165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~-~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~------- 235 (329)
T 3fvz_A 165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQ-FSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK------- 235 (329)
T ss_dssp CCEEEEEC-TTSCEEEEECEECCSSSCCTTE-ESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-------
T ss_pred CCeEEEEc-CCCCEEEEeccCCCCCCCCCcc-cCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe-------
Confidence 68999999 44554444422100 011 234789999998 7777777788999999998776655442
Q ss_pred eecccCCCCeEEEEEcCCCcEEEEE-------c-CCeEEEEeCCCCeEEEEec---cccCceeEEEEeCCCCEEEEEEcC
Q 040987 602 AVGSYKKKAMTAAAFSADGSVLAVA-------A-ETVITLWDPDRNVLVAVIG---ETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 602 ~~~~~~~~~i~~~~~s~dg~~la~~-------~-d~~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
...+...+..++|+| |..++.. . +..|++||..+++.+..+. ++......++++|||.++++...+
T Consensus 236 --~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 236 --HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp --CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred --ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence 223456788999999 4433332 2 4589999999999998873 566778999999999877777777
Q ss_pred CCCeEEEEECCC
Q 040987 671 SKPQLSVWNMSK 682 (762)
Q Consensus 671 ~~~~v~vwd~~~ 682 (762)
+. |++|+++.
T Consensus 313 ~~--I~~~~~~~ 322 (329)
T 3fvz_A 313 NT--VWKFTLTE 322 (329)
T ss_dssp CC--EEEEEEEE
T ss_pred CE--EEEEeCCc
Confidence 77 99999864
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=6e-15 Score=145.91 Aligned_cols=248 Identities=9% Similarity=0.121 Sum_probs=173.0
Q ss_pred CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe-CCCCEEEEeec-CceEE
Q 040987 394 GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN-HDGGLVALRAE-NYCIH 471 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~-dg~i~ 471 (762)
-..+.+++++++++++++...++.|.+||.. ++.+..+..... ...+...+..++++ ++++++++... ++.|+
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~----~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK----RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS----STTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC----CcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 3568899999999988887788999999987 666666542110 00112467889995 67766666543 78999
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
+|| .+++.+..+.. .. ...+..++++|+|+++++.. .++.|.+||.. ++....+. ..
T Consensus 104 ~~d-~~g~~~~~~~~---~~------~~~~~~i~~~~~g~l~v~~~---------~~~~i~~~~~~-g~~~~~~~---~~ 160 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGA---TI------LQHPRGVTVDNKGRIIVVEC---------KVMRVIIFDQN-GNVLHKFG---CS 160 (286)
T ss_dssp EEC-TTSCEEEEECT---TT------CSCEEEEEECTTSCEEEEET---------TTTEEEEECTT-SCEEEEEE---CT
T ss_pred EEC-CCCcEEEEecC---cc------CCCceEEEEeCCCCEEEEEC---------CCCEEEEEcCC-CCEEEEeC---CC
Confidence 999 45554433321 11 34578999999999777765 66899999964 33333321 12
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC-
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET- 629 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~- 629 (762)
++ ...+..++++|+|+++++...++.|++||.... ....+. ..++...+..++++++|+++++.. ++
T Consensus 161 ~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~---------~~g~~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 161 KH-LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIG---------GEGITNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp TT-CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEES---------CTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred Cc-cCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEc---------cCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence 34 457899999999998888778899999997543 222221 112235788999999999888876 65
Q ss_pred eEEEEeCCCCeEEEEeccccC--ceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 630 VITLWDPDRNVLVAVIGETLT--PIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
.|.+||.+ ++.+..+..+.. .+.+++++|+|+++++ +.|+. |++|++....
T Consensus 230 ~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~--v~v~~~~~~~ 282 (286)
T 1q7f_A 230 NLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR--LYIYRYVQLA 282 (286)
T ss_dssp EEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE--EEEEECSCCC
T ss_pred EEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe--EEEEEccccc
Confidence 99999964 666666655433 3779999999987776 56766 9999986543
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=2.9e-15 Score=151.17 Aligned_cols=262 Identities=9% Similarity=-0.023 Sum_probs=180.3
Q ss_pred CcCeEEEEEcCCCcEEEEeecC------------------------CeEEEEeccCCceeecccccccccccccccCCCC
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVT------------------------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPG 336 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~d------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (762)
.+.+.+++++|+|+++++...+ +.|.+||..+++..
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------- 82 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------------------- 82 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--------------------
Confidence 4679999999999988887766 36777777655432
Q ss_pred cccCCccccceeee-ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc--eecc---------CCCCCCeEEEEeCC
Q 040987 337 VRDNDDADLCTTWH-WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFL---------PRIGSPLLYFTESP 404 (762)
Q Consensus 337 ~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~--~~~~---------~~~~~~v~~~~~s~ 404 (762)
..+. ++......++++++|+.+++...++.|++||..... ...+ ..+-.....++++|
T Consensus 83 ----------~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~ 152 (329)
T 3fvz_A 83 ----------QSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP 152 (329)
T ss_dssp ----------EEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT
T ss_pred ----------eccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC
Confidence 1221 344568899999999988888888999999987552 2222 12233688999999
Q ss_pred -CCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCce
Q 040987 405 -DPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGI 481 (762)
Q Consensus 405 -~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~ 481 (762)
++.++++.+ .++.|++|+ .+++.+..+.............-.....++++|+ +.++++...++.|++||..+++.+
T Consensus 153 ~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 153 STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV 231 (329)
T ss_dssp TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 777777775 589999999 5577777664322100000011134789999998 777777778899999999877766
Q ss_pred eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEE
Q 040987 482 SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAV 561 (762)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~ 561 (762)
..+..... ...+..++|+| +..++..+.. ......+..|++|+..+++....+.. ..++ .....++
T Consensus 232 ~~~~~~~~--------~~~~~~~~~~p-g~~~~~~g~~--~v~~~~~~~v~~~~~~~g~~~~~~~~--~~~~-~~~p~~i 297 (329)
T 3fvz_A 232 REIKHASF--------GRNVFAISYIP-GFLFAVNGKP--YFGDQEPVQGFVMNFSSGEIIDVFKP--VRKH-FDMPHDI 297 (329)
T ss_dssp EEECCTTT--------TTCEEEEEEET-TEEEEEECCC--CTTCSCCCCEEEEETTTCCEEEEECC--SSSC-CSSEEEE
T ss_pred EEEecccc--------CCCcceeeecC-CEEEEeCCCE--EeccCCCcEEEEEEcCCCeEEEEEcC--CCCc-cCCeeEE
Confidence 55532211 44577899999 4443333211 10111456899999998877665421 1244 6678999
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 562 AFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 562 ~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
+++|+|.++++...++.|++|++...
T Consensus 298 a~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 298 VASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EECCCCCEEEEECCCCEEEEEeCCcc
Confidence 99999988888888999999998643
No 183
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=1.2e-14 Score=143.81 Aligned_cols=248 Identities=12% Similarity=0.151 Sum_probs=175.2
Q ss_pred cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 111 EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 111 ~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
.+|-..+.++++++++ .++++.+.++.|.+||.. ++.+..+....
T Consensus 26 ~g~~~~p~~v~~~~~g-------~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~--------------------------- 70 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQN-------DIIVADTNNHRIQIFDKE-GRFKFQFGECG--------------------------- 70 (286)
T ss_dssp TTCBSCEEEEEECTTC-------CEEEEEGGGTEEEEECTT-SCEEEEECCBS---------------------------
T ss_pred CCccCCCceEEECCCC-------CEEEEECCCCEEEEECCC-CcEEEEecccC---------------------------
Confidence 3566789999999999 577787889999999986 55544332100
Q ss_pred EEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEE-CCCCCEEEEEe--CCeEEEEEccCch
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI-SSSGKYFGIRK--QRKLLIWKVPDVE 267 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-spdg~~la~~~--~~~i~iwd~~~~~ 267 (762)
....+...+..+++ .++++++++.. ++.|.+|+. +++
T Consensus 71 ---------------------------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~ 110 (286)
T 1q7f_A 71 ---------------------------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ 110 (286)
T ss_dssp ---------------------------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred ---------------------------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCc
Confidence 00112345678899 57887777663 899999994 444
Q ss_pred hhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccce
Q 040987 268 AERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT 347 (762)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (762)
.. ..+...+...+.+++++|+|+++++...++.|.+|+..+. .. .
T Consensus 111 ~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~------------------------------~ 155 (286)
T 1q7f_A 111 FV----RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VL------------------------------H 155 (286)
T ss_dssp EE----EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE------------------------------E
T ss_pred EE----EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EE------------------------------E
Confidence 22 1222344567899999999998887777899999996432 11 1
Q ss_pred eee--ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC--CCCeEEEEeCCCCCeEEEEecCC-cEEEEE
Q 040987 348 TWH--WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI--GSPLLYFTESPDPSLSSISCADN-QVHLLK 422 (762)
Q Consensus 348 ~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~-~i~i~d 422 (762)
.+. .+...+..++++++|+.+++...++.|++||........+... ...+..++++++|+++++...++ .|.+|+
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 121 3345678999999998777777789999999864433333222 25688999999998888777775 999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
.. ++.+..+..+.. ...+.+++++|+|+++++ +.++.|++|+....
T Consensus 236 ~~-g~~~~~~~~~~~--------~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 236 QD-GQLISALESKVK--------HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TT-SCEEEEEEESSC--------CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CC-CCEEEEEcccCC--------CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 64 666666654331 134678999999986666 67899999998654
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=3e-15 Score=150.69 Aligned_cols=274 Identities=7% Similarity=-0.050 Sum_probs=187.7
Q ss_pred cCCeEEEEecCCCceeccC-------CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 373 KEGVLVVWQLDTGKKKFLP-------RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
.++.|.++|.++++..... ........+.+. +++.+++...++.|.+||..+++.+.++...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---------- 83 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---------- 83 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC----------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC----------
Confidence 3789999999998874321 233456777773 3455555556789999999999998888532
Q ss_pred cCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 446 KGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
.....++++++++.+++...++.|.+||..+++....+...... ........+++ .++ .+.++..
T Consensus 84 -~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-----~~~~~p~~i~~-~~~-~lyv~~~------- 148 (328)
T 3dsm_A 84 -TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-----MESGSTEQMVQ-YGK-YVYVNCW------- 148 (328)
T ss_dssp -SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----TTTCBCCCEEE-ETT-EEEEEEC-------
T ss_pred -CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----ccCCCcceEEE-ECC-EEEEEcC-------
Confidence 45688999999854444447899999999988766655432200 00113445666 344 4444431
Q ss_pred CceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC----------CcEEEEEcccccccccccC
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG----------GDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~ 595 (762)
+.++.|.++|..+++....+.. ......++++|+|++++++..+ +.|.++|..+++....+.
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~-------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~- 220 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTI-------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK- 220 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEEC-------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-
T ss_pred CCCCEEEEEECCCCeEEEEEEc-------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-
Confidence 0267999999999876655532 2244678999999977776654 789999998877554331
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEE--eccccCceeEEEEeCCCCEEEEEE-----
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAV--IGETLTPIMNMSFVGSSEYLVATS----- 668 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~--l~~~~~~v~~~~~s~dg~~l~s~~----- 668 (762)
. ........++|+||++.|.++.. .|.+||..+++.... +..+......++++|++..|+.+.
T Consensus 221 --------~-~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~ 290 (328)
T 3dsm_A 221 --------F-KLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQ 290 (328)
T ss_dssp --------C-CTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSS
T ss_pred --------c-CCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccc
Confidence 0 11246789999999999888755 899999998876421 222235578999999544444443
Q ss_pred cCCCCeEEEEECCCCceeeEEEEee
Q 040987 669 WGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 669 ~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
.++. |.+||.+ |++++.+....
T Consensus 291 ~~~~--V~v~d~~-g~~~~~i~~G~ 312 (328)
T 3dsm_A 291 QQGI--VYRYSPQ-GKLIDEFYVGI 312 (328)
T ss_dssp SEEE--EEEECTT-CCEEEEEEEEE
T ss_pred cCCE--EEEECCC-CCEEEEEEecc
Confidence 4555 9999998 99999887654
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=4.8e-15 Score=147.39 Aligned_cols=254 Identities=14% Similarity=-0.028 Sum_probs=175.6
Q ss_pred CCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEE
Q 040987 393 IGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIH 471 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 471 (762)
......+++|+|+|+ +++++..++.|..|+..++ ...+..+. ..+.+++++++|+++++...++.|.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~----------~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS----------HHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC----------SSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC----------CCcceeeECCCCcEEEEecCCCeEE
Confidence 344567899999998 6777778899999999877 55554433 5678999999999887777778999
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe----eeccc----cCCCceeEEEEEEecCCCcee
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD----IKLAE----EGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~----~~~~~----~~~~~d~~i~iwd~~~~~~~~ 543 (762)
+||..+++.......... . ....+..++++|+|+++++.. ..... ......+.|..++.. + ...
T Consensus 94 ~~d~~~g~~~~~~~~~~~-~-----~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~ 165 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEG-K-----KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TLS 165 (296)
T ss_dssp EECSTTCCEEEEECEETT-E-----ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CEE
T ss_pred EEcCCCCcEEEEeeccCC-C-----CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CEE
Confidence 999977764322211110 0 023456899999999888732 10000 000012355555544 2 222
Q ss_pred EEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc-cccc-cccccCCceeeeeecccCCCCeEEEEEcCCCc
Q 040987 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN-DELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS 621 (762)
Q Consensus 544 ~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 621 (762)
.+ ..+ ......++|+||++.+++.+.++.|++|++. ++.. .... .. ..+...+..++++++|+
T Consensus 166 ~~-----~~~-~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~--------~~-~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 166 AP-----IRD-RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV--------HF-TVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EE-----ECC-CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE--------EE-CCSSSCCCSEEEBTTSC
T ss_pred Ee-----ecC-CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe--------Ee-eCCCCCCCeEEECCCCC
Confidence 22 233 5567899999999998777778899999997 3332 1000 01 12345667899999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEE-eCCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 622 VLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSF-VGSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 622 ~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~-s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
+.++. ++.|.+||.+ ++.+..+..+.. +.+++| +||++.|++++.++ +.-++..+.++..
T Consensus 231 l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 231 IWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIETNVRGLEH 291 (296)
T ss_dssp EEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE---EEEEECSCCBCCC
T ss_pred EEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEcccccccc
Confidence 77766 8899999987 778888877777 899999 58999999998876 8888888877654
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.70 E-value=5.6e-15 Score=147.46 Aligned_cols=300 Identities=11% Similarity=0.051 Sum_probs=199.8
Q ss_pred EEEcCCCcEEEEeec-----CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 287 LAFHPTQRIVAAGDV-----TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 287 ~~~sp~~~~l~~~~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....|+++.+++... ++.|.+.|..+.+.+ ..+.....+ . +++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~------------------------------~~I~vG~~P-~-va~ 85 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI------------------------------GMIDGGFLP-N-PVV 85 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE------------------------------EEEEECSSC-E-EEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE------------------------------EEEECCCCC-c-EEE
Confidence 455789998887755 679999999877544 333333333 3 999
Q ss_pred ecCCCEEEEEe----------cCCeEEEEecCCCceeccCCC--------CCCeEEEEeCCCCCeEEEEec--CCcEEEE
Q 040987 362 SSDGAYLYSGG----------KEGVLVVWQLDTGKKKFLPRI--------GSPLLYFTESPDPSLSSISCA--DNQVHLL 421 (762)
Q Consensus 362 s~~g~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~--d~~i~i~ 421 (762)
+|||++++.+. .++.|.+||..+.+....... ......++++|||++++++.. ++.|.++
T Consensus 86 spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVI 165 (386)
T 3sjl_D 86 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 165 (386)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 99999988775 357899999999887532211 224567999999999998864 6899999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC-CCceeeEEeecccccCCCCccee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD-DRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
|+.+++.+.++.... ....+....+.+++.+.||.+.+.++.+ ++..... .....+. ...
T Consensus 166 D~~t~~vv~tI~v~g-------------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~---~~~~~~~---~~~ 226 (386)
T 3sjl_D 166 DLEGKAFKRMLDVPD-------------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH---TEVFHPE---DEF 226 (386)
T ss_dssp ETTTTEEEEEEECCS-------------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE---CCCCSCT---TSC
T ss_pred ECCCCcEEEEEECCC-------------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEee---cceeccc---ccc
Confidence 999999998885421 1223333455666777888888888876 4432111 1111111 111
Q ss_pred E-EEEEEe-cCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--EEEEE----eecCCCCCceEEEEEcCCCCeEEE
Q 040987 501 V-TLVALS-QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF--TLSTI----VYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 501 v-~~~~~s-p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~----~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
+ ...+|. ++|+++... .++.+.+.|..+..... .+... ...+-..+....++++|+++.++.
T Consensus 227 ~~~~~~~~~~dG~~~~vs----------~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV 296 (386)
T 3sjl_D 227 LINHPAYSQKAGRLVWPT----------YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 296 (386)
T ss_dssp BCSCCEEETTTTEEEEEB----------TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ccccceeEcCCCcEEEEe----------CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence 1 123664 678665544 55789999997664321 11100 000100223445788999988877
Q ss_pred EeC----------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc--CCeEEEEeCCCC
Q 040987 573 SSY----------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA--ETVITLWDPDRN 639 (762)
Q Consensus 573 ~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~--d~~i~iwd~~~~ 639 (762)
... .+.|.+.|+.+++.+..++ -...+..+++++|++ +|++.+ ++.|.++|..++
T Consensus 297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------------vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------------EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EeccccccccCCCCCEEEEEECCCCeEEEEEE------------CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 643 2469999999998877663 134678999999997 666654 899999999999
Q ss_pred eEEEEeccccCceeEEEEeCC
Q 040987 640 VLVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 640 ~~~~~l~~~~~~v~~~~~s~d 660 (762)
+.+.++... +.-+.|.+++|
T Consensus 365 k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 365 EELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CEEEEECCC-CSSCCEEEECC
T ss_pred cEEEEecCC-CCCceeEECCc
Confidence 999988643 33456777776
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=1.7e-14 Score=162.07 Aligned_cols=277 Identities=10% Similarity=-0.000 Sum_probs=187.2
Q ss_pred ecCCCEEEEEe-C-----CEEEEEEcccceEEeee------cCCccceeEEEEeCCCCcccceeeeEEeeecC-C----e
Q 040987 82 SNDVKRLLVCT-S-----NTVSIFSTSTGLQISSL------EGHKAPVTTVIVVPASTPATKILSYCWTASLD-G----T 144 (762)
Q Consensus 82 s~dg~~la~~~-~-----~~i~iwd~~~~~~~~~l------~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d-~----~ 144 (762)
+|||++++... + +.+.+.+..+++....+ .+|...+..++||||| ++||.++.+ | +
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg-------~~la~~~~~~G~~~~~ 152 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDG-------EYFAYGLSASGSDWVT 152 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTS-------SEEEEEEEETTCSCEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCC-------CEEEEEEcCCCCceEE
Confidence 49999999876 3 25566665555433222 2455678999999999 455444332 2 8
Q ss_pred EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 145 IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
|++||+.+|+.+.....
T Consensus 153 i~v~d~~tg~~~~~~~~--------------------------------------------------------------- 169 (710)
T 2xdw_A 153 IKFMKVDGAKELPDVLE--------------------------------------------------------------- 169 (710)
T ss_dssp EEEEETTTTEEEEEEEE---------------------------------------------------------------
T ss_pred EEEEECCCCCCCccccc---------------------------------------------------------------
Confidence 99999998876542110
Q ss_pred cccceeeeccCCCceEEEECCCCCEEEEE-eCCe----------------EEEEEccCchhhhheeeeeeeccCcCeEEE
Q 040987 225 RLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRK----------------LLIWKVPDVEAERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 287 (762)
...+..++|+|||+.|+.+ .++. |++|++.+++.....+ .....|...+..+
T Consensus 170 ----------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v-~~~~~~~~~~~~~ 238 (710)
T 2xdw_A 170 ----------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC-AEFPDEPKWMGGA 238 (710)
T ss_dssp ----------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE-ECCTTCTTCEEEE
T ss_pred ----------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE-eccCCCCeEEEEE
Confidence 0114568999999999854 3433 9999998876420011 1112245567899
Q ss_pred EEcCCCcEEEEeec-----CCeEEEEeccC------CceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 288 AFHPTQRIVAAGDV-----TGRILIWRGFG------DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 288 ~~sp~~~~l~~~~~-----dg~v~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
.|+|||++|+..+. +..|++||+.+ +.. ....+..+...+
T Consensus 239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----------------------------~~~~l~~~~~~~ 289 (710)
T 2xdw_A 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-----------------------------KWVKLIDNFEGE 289 (710)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-----------------------------CCEEEECSSSSC
T ss_pred EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-----------------------------ceEEeeCCCCcE
Confidence 99999999988764 56899999865 210 123445555555
Q ss_pred eEEEEecCCCEEEEEecC----CeEEEEecCCCce---eccCCCCC--CeEEEEeCCCCCeEEEEecCCc--EEEEEcCC
Q 040987 357 SVLIFSSDGAYLYSGGKE----GVLVVWQLDTGKK---KFLPRIGS--PLLYFTESPDPSLSSISCADNQ--VHLLKMPS 425 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~d----g~i~~wd~~~~~~---~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~--i~i~d~~~ 425 (762)
.. .|+++|+.|+..+.. +.|.+||+.++.. ..+..+.. .+..++|++++.++++...++. |.+|++.+
T Consensus 290 ~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 290 YD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp EE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT
T ss_pred EE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC
Confidence 44 488999888876653 4699999988742 33333333 5778899887888888877874 66778767
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee----cCceEEEEEcCCCC
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA----ENYCIHFYSLLDDR 479 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~ 479 (762)
++.+..+..+. +.+..+.++|+++.++... ..+.++.||+.+++
T Consensus 369 g~~~~~l~~~~----------~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 369 GALLKIFPLEV----------GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCEEEEECCCS----------SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEecCCCC----------ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 87777776553 6788899999998776543 34789999998876
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=2.3e-13 Score=135.51 Aligned_cols=283 Identities=12% Similarity=0.029 Sum_probs=195.2
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
.+...+.+++++++|+.+++...++.|.+||.. ++.... ......+..++++++|.++++...++.|..|+.. ++.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII 89 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence 344678999999999877776667899999988 655432 2345678999999999887776667889999986 332
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
..+.... ....+..++++++++++++...++.|..||. +++.. .+..... ...+..+++++
T Consensus 90 -~~~~~~~--------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~--------~~~~~~i~~~~ 150 (299)
T 2z2n_A 90 -KEYTLPN--------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNK--------GSYPSFITLGS 150 (299)
T ss_dssp -EEEECSS--------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSST--------TCCEEEEEECT
T ss_pred -EEEeCCC--------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCC--------CCCCceEEEcC
Confidence 2232110 0146789999999988887777889999998 44322 2211111 34588999999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+|+.+++.. ..+.|..||. +++... +. .... ...+.+++++++|+++++...++.|.+||. ++.
T Consensus 151 ~g~l~v~~~---------~~~~i~~~~~-~g~~~~-~~---~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 151 DNALWFTEN---------QNNAIGRITE-SGDITE-FK---IPTP-ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp TSCEEEEET---------TTTEEEEECT-TCCEEE-EE---CSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCEEEEeC---------CCCEEEEEcC-CCcEEE-ee---CCCC-CCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 998777664 5678999998 544322 11 1233 456889999999997777666788999998 554
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE-eccccCceeEEEEeCCCCEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV-IGETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~dg~~l~s 666 (762)
..... ...+...+.+++++++|++.++.. ++.|..||. +++.... +..+...+.++++ ++|++.++
T Consensus 215 ~~~~~----------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 215 ITEFK----------IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp EEEEE----------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred EEEEE----------CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 32210 122456788999999999777664 799999998 4553322 3344567899999 88887776
Q ss_pred EEcCCCCeEEEEECCCCce
Q 040987 667 TSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~~ 685 (762)
.+.++ |..++.+++++
T Consensus 283 ~~~~~---l~~~~~~~~~~ 298 (299)
T 2z2n_A 283 MECDK---IGKLTLIKDNM 298 (299)
T ss_dssp ETTTE---EEEEEEC----
T ss_pred ecCCc---EEEEEcCcccC
Confidence 65444 88888876543
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.68 E-value=1.2e-13 Score=140.52 Aligned_cols=293 Identities=9% Similarity=-0.058 Sum_probs=191.4
Q ss_pred EecCCCEEEEEec--CC---eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEcCC
Q 040987 361 FSSDGAYLYSGGK--EG---VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKMPS 425 (762)
Q Consensus 361 ~s~~g~~l~s~~~--dg---~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~~~ 425 (762)
..|++++++.... .. +|.++|..+++.......+... .++++|||++++++. .++.|.+||..+
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 4477877777653 22 8899999998876443333334 899999999999885 357899999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec--CceEEEEEcCCCCceee-EEeecccccCCCCcceeEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE--NYCIHFYSLLDDRGISE-VQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 502 (762)
++.+..+....... . ........++++|||++|+++.. ++.|.++| .+++.+.. +.. . .
T Consensus 107 ~~~~~~i~~~~~~~-~--~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----------~---~ 168 (373)
T 2mad_H 107 FLPIADIELPDAPR-F--DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----------P---T 168 (373)
T ss_pred CcEEEEEECCCccc-c--ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----------C---c
Confidence 88887764320000 0 00023457999999999998874 47899999 88876655 332 1 1
Q ss_pred EEEEecCCCe-EEEEeeeccccCCCceeEEEEEEecCCCceeEEEE-EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 503 LVALSQDGSL-MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST-IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 503 ~~~~sp~g~~-l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
++.+.|+++. +++.+ .|+.+.+++. +++....... ..+.+. ..-.....+.+++..++..+..+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~---------~dg~~~~vd~-~g~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~v~ 237 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLC---------AQGGLAKTDH-AGGAAGAGLVGAMLTAA-QNLLTQPAQANKSGRIVWPVYSGKIL 237 (373)
T ss_pred eEEEEeCCCceEEEEc---------CCCCEEEEEC-CCcEEEEEeccccccCC-cceeecceeEecCCEEEEEcCCceEE
Confidence 2455666643 34444 7788999999 7665432211 001111 11123356677766655555788999
Q ss_pred EEEcccccccccccCCceeeee----ecccCCCCeEEEEEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEEEe
Q 040987 581 VWICNDELQQKDLQSSGWSCHA----VGSYKKKAMTAAAFSADGSVLAVAA-----------ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~~l 645 (762)
+.|+.+....... .|.... ...........++++||++.+.++. ++.|.++|..+++.+..+
T Consensus 238 vid~~~~~~~v~~---~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i 314 (373)
T 2mad_H 238 QADISAAGATNKA---PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred EEeccCCcceEee---eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE
Confidence 9998755322110 111000 0000123344588999999877753 257999999999999888
Q ss_pred ccccCceeEEEEeCCCC-EEEEEE-cCCCCeEEEEECCCCceeeEE
Q 040987 646 GETLTPIMNMSFVGSSE-YLVATS-WGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 646 ~~~~~~v~~~~~s~dg~-~l~s~~-~d~~~~v~vwd~~~~~~~~~~ 689 (762)
.. .....+++|+|||+ +++++. .++. |.+||+.+++.+..+
T Consensus 315 ~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~--V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 315 SL-GHDVDAISVAQDGGPDLYALSAGTEV--LHIYDAGAGDQDQST 357 (373)
T ss_pred EC-CCCcCeEEECCCCCeEEEEEcCCCCe--EEEEECCCCCEEeee
Confidence 53 33578999999999 777776 3666 999999999988764
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=7.8e-15 Score=164.30 Aligned_cols=276 Identities=10% Similarity=-0.068 Sum_probs=180.1
Q ss_pred eecCCCEEEEEe-C-----CEEEEEEcccceEEeee------cCCccceeEEEEeCCCCcccceeeeEE-----eeecCC
Q 040987 81 FSNDVKRLLVCT-S-----NTVSIFSTSTGLQISSL------EGHKAPVTTVIVVPASTPATKILSYCW-----TASLDG 143 (762)
Q Consensus 81 ~s~dg~~la~~~-~-----~~i~iwd~~~~~~~~~l------~~h~~~V~~v~~s~~~~~~~~l~~~l~-----s~s~d~ 143 (762)
.+|||+++++.. + +.|.+.+...++....+ .+|...+.+++||||| ++|| +|+.+.
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG-------~~la~~~~~~G~~~~ 147 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDG-------KKVAFAQKPNAADEA 147 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTS-------SEEEEEEEETTCSCC
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCC-------CEEEEEECCCCCceE
Confidence 469999999887 3 23455555455433333 2566789999999999 4444 344457
Q ss_pred eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCC
Q 040987 144 TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTE 223 (762)
Q Consensus 144 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~ 223 (762)
+|++||+.+|+.+. .
T Consensus 148 ~i~v~dl~tg~~~~--~--------------------------------------------------------------- 162 (695)
T 2bkl_A 148 VLHVIDVDSGEWSK--V--------------------------------------------------------------- 162 (695)
T ss_dssp EEEEEETTTCCBCS--S---------------------------------------------------------------
T ss_pred EEEEEECCCCCCcC--C---------------------------------------------------------------
Confidence 88899888876420 0
Q ss_pred ccccceeeeccCCCceEEEECCCCCEEEEE-eCCe-------------EEEEEccCchhhhheeeeeeeccCcCeEEEEE
Q 040987 224 SRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRK-------------LLIWKVPDVEAERVVMRKITLHHTKKLTVLAF 289 (762)
Q Consensus 224 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 289 (762)
.... ......++|+|||+.|+.+ .+.. |++|++.+++... ........+...+..+.|
T Consensus 163 -----~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 163 -----DVIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-TVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp -----CCBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-EEEECCCCCTTCEEEEEE
T ss_pred -----cccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-eEEEecCCCCEEEEEEEE
Confidence 0000 0112567999999999854 4443 9999999876421 111122234567889999
Q ss_pred cCCCcEEEEeecCC----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 290 HPTQRIVAAGDVTG----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 290 sp~~~~l~~~~~dg----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
||||++|+..+.++ .|++|+..+++ ...+..+...+....+ ++|
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-------------------------------~~~l~~~~~~~~~~~~-~~g 282 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKD-------------------------------FRLLVKGVGAKYEVHA-WKD 282 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSS-------------------------------CEEEEECSSCCEEEEE-ETT
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCc-------------------------------eEEeecCCCceEEEEe-cCC
Confidence 99999998877665 66666543321 2344455556666666 666
Q ss_pred CEEEEEec----CCeEEEEecCCCce---eccCC-C-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEccC
Q 040987 366 AYLYSGGK----EGVLVVWQLDTGKK---KFLPR-I-GSPLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISGI 435 (762)
Q Consensus 366 ~~l~s~~~----dg~i~~wd~~~~~~---~~~~~-~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~ 435 (762)
+ ++..+. ++.|.+||+.+++. ..+.. . ...+..++++ ++.++++...++..++|.+. +++....+..+
T Consensus 283 ~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 360 (695)
T 2bkl_A 283 R-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP 360 (695)
T ss_dssp E-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS
T ss_pred c-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC
Confidence 6 554443 57899999988763 33333 2 3457788888 67788888888887777654 35555555433
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEee----cCceEEEEEcCCCC
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRA----ENYCIHFYSLLDDR 479 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~ 479 (762)
. .+.+..++++|+++.++... ..++|++||+.+++
T Consensus 361 ~---------~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 361 G---------VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp S---------SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred C---------CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 1 15778888999998777443 34789999998876
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=3.1e-14 Score=143.24 Aligned_cols=265 Identities=11% Similarity=0.035 Sum_probs=176.1
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~ 433 (762)
....+.+. +++..++...++.|.+||..+++.............++++++++ ++++. .++.|.+||..+++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEE
Confidence 35667764 44555555667899999999998855444556788999999984 55554 78999999999998887765
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
..... ........+++ . +..+.++. .++.|.++|+.+++....+... .....++++|+|+
T Consensus 123 ~g~~~-----~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-----------~~p~~i~~~~dG~ 184 (328)
T 3dsm_A 123 CPDMD-----MESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-----------IQPTSLVMDKYNK 184 (328)
T ss_dssp CTTCC-----TTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-----------SCBCCCEECTTSE
T ss_pred cCCcc-----ccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-----------CCccceEEcCCCC
Confidence 43200 00014456777 3 44444444 4789999999998776665432 2246788999999
Q ss_pred eEEEEeeeccccC-CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc
Q 040987 512 LMSTVDIKLAEEG-IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 512 ~l~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
++++......... .+..+.|.++|..+++....+. .+. ......++|+||+++|+++.. .|.+||..+++..
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~----~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK----FKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE----CCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred EEEEECCCccCCccccCCceEEEEECCCCeEEEEEe----cCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 7777651000000 0002789999998886554442 121 236789999999999888754 8999999887753
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEE----c-CCeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVA----A-ETVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~----~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
.... ..........++++| ++++.++. . ++.|.+||.+ ++.+..+..... -..++|
T Consensus 258 ~~~~---------~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 258 VRPF---------LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp SSCS---------BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred eeee---------ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 2110 011145678999999 56666665 4 7899999998 888887753322 244544
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.68 E-value=3.6e-14 Score=141.65 Aligned_cols=300 Identities=12% Similarity=-0.003 Sum_probs=193.7
Q ss_pred EEEecCCCEEEEEec-----CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEc
Q 040987 359 LIFSSDGAYLYSGGK-----EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKM 423 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~-----dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~ 423 (762)
....|+++.++.... ++.|.+.|..+++.......+.... ++++|||++++++. .++.|.+||.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 345689999888765 5799999999998864433333334 99999999998875 3578999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec--CceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE--NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+++.+..+.-..... .........++|+|||++++++.. ++.|.++|+.+++.+.++.... .
T Consensus 117 ~t~~v~~~I~v~~g~r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-----------~- 181 (386)
T 3sjl_D 117 VTLLPTADIELPDAPR---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----------C- 181 (386)
T ss_dssp TTCCEEEEEEETTCCC---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------E-
T ss_pred CCCeEEEEEECCCccc---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----------c-
Confidence 9999988875321000 000023567999999999888864 6899999999998888775421 0
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEeecCCCCCceE-EEEEc-CCCCeEEEEeCCCc
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVYEPHRDAGIS-AVAFH-PNRRAAVSSSYGGD 578 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~h~~~~v~-~~~~s-pd~~~l~~~~~dg~ 578 (762)
...+....+.+++.+ .||.+.+.++.+ ++..... ...+... ...+. ...|. ++|++++ .+.+|.
T Consensus 182 -~~~~P~g~~~~~~~~---------~DG~~~~v~~~~~g~v~~~~-~~~~~~~-~~~~~~~~~~~~~dG~~~~-vs~~g~ 248 (386)
T 3sjl_D 182 -YHIFPTAPDTFFMHC---------RDGSLAKVAFGTEGTPEITH-TEVFHPE-DEFLINHPAYSQKAGRLVW-PTYTGK 248 (386)
T ss_dssp -EEEEEEETTEEEEEE---------TTSCEEEEECCSSSCCEEEE-CCCCSCT-TSCBCSCCEEETTTTEEEE-EBTTSE
T ss_pred -ceeecCCCceeEEEC---------CCCCEEEEECCCCCeEEEee-cceeccc-cccccccceeEcCCCcEEE-EeCCCE
Confidence 112222334444444 556666666654 3321111 0011111 12221 24554 6776554 666899
Q ss_pred EEEEEcccccccccccCCceeeee----ecccCCCCeEEEEEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEE
Q 040987 579 FKVWICNDELQQKDLQSSGWSCHA----VGSYKKKAMTAAAFSADGSVLAVAA-----------ETVITLWDPDRNVLVA 643 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~ 643 (762)
+++.|..+......- .|.... ...........++++++++.+.+.. ...|.+.|+.+++.+.
T Consensus 249 V~v~d~~~~~~~v~~---~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 249 IHQIDLSSGDAKFLP---AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp EEEEECTTSSCEECC---CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred EEEEECCCCcceeec---ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 999999766432111 111000 0000123344578899999888763 1579999999999999
Q ss_pred EeccccCceeEEEEeCCCC-EEEEEEc-CCCCeEEEEECCCCceeeEEEEee
Q 040987 644 VIGETLTPIMNMSFVGSSE-YLVATSW-GSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~-~l~s~~~-d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
.+... .++++++|++|++ +|+++.. ++. |.++|..+++.+.++....
T Consensus 326 ~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~--VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 326 KFEMG-HEIDSINVSQDEKPLLYALSTGDKT--LYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEE-EEECEEEECSSSSCEEEEEETTTTE--EEEEETTTCCEEEEECCCC
T ss_pred EEECC-CCcceEEECCCCCeEEEEEcCCCCe--EEEEECCCCcEEEEecCCC
Confidence 88643 3688999999997 6666544 555 9999999999998876654
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=3e-14 Score=141.61 Aligned_cols=252 Identities=10% Similarity=-0.000 Sum_probs=173.9
Q ss_pred cceeeeccccceeEEEEecCCC-EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGA-YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
.+..+..+.....+++|+|+|+ .++++..++.|..||..++ ...+......+.+++++++|+++++...++.|.+||.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 3455666667788999999998 6777778899999999988 5555556677899999999998777666789999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE----ee-------------cCceEEEEEcCCCCceeeEEe
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL----RA-------------ENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~ 486 (762)
.+++........... ....+..++++|+|+++++ ++ ..+.|..++.. ++ ...+..
T Consensus 98 ~~g~~~~~~~~~~~~------~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~ 169 (296)
T 3e5z_A 98 PGGEWESIADSFEGK------KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR 169 (296)
T ss_dssp TTCCEEEEECEETTE------ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC
T ss_pred CCCcEEEEeeccCCC------CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec
Confidence 887765443221100 0134678999999998887 32 13456666654 32 222211
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEEEEeecCCCCCceEEEEEcC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
. ......++|+|+|+.+++.. .++.|.+|++. ++........ +..+ ...+.++++++
T Consensus 170 ~----------~~~~~gi~~s~dg~~lv~~~---------~~~~i~~~~~~~~g~~~~~~~~--~~~~-~~~p~~i~~d~ 227 (296)
T 3e5z_A 170 D----------RVKPNGLAFLPSGNLLVSDT---------GDNATHRYCLNARGETEYQGVH--FTVE-PGKTDGLRVDA 227 (296)
T ss_dssp C----------CSSEEEEEECTTSCEEEEET---------TTTEEEEEEECSSSCEEEEEEE--ECCS-SSCCCSEEEBT
T ss_pred C----------CCCCccEEECCCCCEEEEeC---------CCCeEEEEEECCCCcCcCCCeE--eeCC-CCCCCeEEECC
Confidence 1 33468899999999985554 67899999997 3332011111 1234 55677899999
Q ss_pred CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEE-cCCCcEEEEEcCCeEEEEeCCCCeEE
Q 040987 566 NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF-SADGSVLAVAAETVITLWDPDRNVLV 642 (762)
Q Consensus 566 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~dg~~la~~~d~~i~iwd~~~~~~~ 642 (762)
+|+++++. ++.|.+||.. ++....+ ..+.. +++++| +|+++.|++++.+.+.-++.++.++.
T Consensus 228 ~G~l~v~~--~~~v~~~~~~-g~~~~~~-----------~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 228 GGLIWASA--GDGVHVLTPD-GDELGRV-----------LTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLE 290 (296)
T ss_dssp TSCEEEEE--TTEEEEECTT-SCEEEEE-----------ECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCC
T ss_pred CCCEEEEc--CCeEEEECCC-CCEEEEE-----------ECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccccc
Confidence 99877666 7889999986 4433322 12334 889999 68999999888667777777766543
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.67 E-value=3.1e-15 Score=167.60 Aligned_cols=287 Identities=11% Similarity=-0.019 Sum_probs=182.2
Q ss_pred EecCCCEEEEEecCC-----eEEEEecCCCceeccC-------CCCCCeEEEEeCCCCCeEEEEec-----CCcEEEEEc
Q 040987 361 FSSDGAYLYSGGKEG-----VLVVWQLDTGKKKFLP-------RIGSPLLYFTESPDPSLSSISCA-----DNQVHLLKM 423 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg-----~i~~wd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~i~d~ 423 (762)
.+|+|++++....++ .|++.+...++...+. .+...+..++|||||++|+.+.. +..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 347899888776543 3555565555543332 23336889999999999986533 357999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce-------------EEEEEcCCCCceeeEEeeccc
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC-------------IHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~ 490 (762)
.+++.+. ..+.. ......++|+|||+.|+.++.+.. |++|++.++.....+......
T Consensus 155 ~tg~~~~--~~~~~--------~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 155 DSGEWSK--VDVIE--------GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG 224 (695)
T ss_dssp TTCCBCS--SCCBS--------CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred CCCCCcC--CcccC--------cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence 9987531 11110 011267999999999999987665 999999887643233222211
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
+ ...+..+.|+|||++|+..+.+.. ....|++|+..++. ...+. .+ ...+....+ ++|+ +
T Consensus 225 ~------~~~~~~~~~SpDG~~l~~~~~~~~-----~~~~l~~~~~~~~~-~~~l~-----~~-~~~~~~~~~-~~g~-l 284 (695)
T 2bkl_A 225 D------PTTFLQSDLSRDGKYLFVYILRGW-----SENDVYWKRPGEKD-FRLLV-----KG-VGAKYEVHA-WKDR-F 284 (695)
T ss_dssp C------TTCEEEEEECTTSCCEEEEEEETT-----TEEEEEEECTTCSS-CEEEE-----EC-SSCCEEEEE-ETTE-E
T ss_pred C------CEEEEEEEECCCCCEEEEEEeCCC-----CceEEEEEcCCCCc-eEEee-----cC-CCceEEEEe-cCCc-E
Confidence 1 346789999999999998873200 12367777654443 22232 23 445566666 6666 5
Q ss_pred EEEeC----CCcEEEEEcccccccccccCCceeeeeecccC-CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC-CCeEEE
Q 040987 571 VSSSY----GGDFKVWICNDELQQKDLQSSGWSCHAVGSYK-KKAMTAAAFSADGSVLAVAA-ETVITLWDPD-RNVLVA 643 (762)
Q Consensus 571 ~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~-~~~~~~ 643 (762)
+..+. ++.|.+||+.++... .|... ...+ ...+..++|+ ++.++++.. |+..+||.+. +++...
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~------~~~~l--~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARA------SWKEI--VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR 355 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGG------GCEEE--ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred EEEECCCCCCCEEEEEeCCCCCcc------CCeEE--ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence 54443 478999999776431 01111 1112 4567888888 677777777 8887777554 355566
Q ss_pred Eeccc-cCceeEEEEeCCCCEEEEEEcC--CCCeEEEEECCCCcee
Q 040987 644 VIGET-LTPIMNMSFVGSSEYLVATSWG--SKPQLSVWNMSKLSIS 686 (762)
Q Consensus 644 ~l~~~-~~~v~~~~~s~dg~~l~s~~~d--~~~~v~vwd~~~~~~~ 686 (762)
.+..+ ...+..++++||++.|+....+ ..+.|++||+.+++..
T Consensus 356 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 356 TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 66554 5668889999999877744322 1124999999998753
No 195
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=3e-11 Score=137.44 Aligned_cols=505 Identities=10% Similarity=0.052 Sum_probs=299.2
Q ss_pred ccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCcc----ceeEEEEeCCCCcccceeeeEEeeecCCeEEEE
Q 040987 73 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKA----PVTTVIVVPASTPATKILSYCWTASLDGTIKYW 148 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~----~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vW 148 (762)
+.|.+ +...++|.+.+... +-+..||.++++... +..... .|.++...++| .+.+ ++. +.|..|
T Consensus 88 n~I~~-i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g-------~lwi-~t~-~gl~~~ 155 (795)
T 4a2l_A 88 DISRI-VKTDSQGRVWIGTR-DGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPE-------QLLI-STP-EGLIMF 155 (795)
T ss_dssp SCEEE-EEECTTSCEEEEES-SCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETT-------EEEE-EET-TEEEEE
T ss_pred cceeE-EEECCCCCEEEEeC-CchheeCCCCCeEEe-ccccccCCCceEEEEEECCCC-------CEEE-EEC-CceEEE
Confidence 45775 88888887666544 458999988776432 322111 28999999998 3444 333 568999
Q ss_pred eCCCcceEEEEEec--cc-eEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 149 DFSVPELLKTIDVK--FS-IFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 149 d~~~~~~~~~~~~~--~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
|..+++........ .. +.++.. ..++. + ..|+.++.|..|+..+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~i~~--------d~~g~----l-------------------wigt~~~Gl~~~~~~~~~ 204 (795)
T 4a2l_A 156 DIKESKFIDDSFSTAMHKTIASTLY--------RQGDQ----I-------------------YIGTSTDGLYTYSITQKT 204 (795)
T ss_dssp ETTTTEEECSSSCHHHHTCCEEEEE--------EETTE----E-------------------EEEESSSCEEEEETTTCC
T ss_pred ECCCCEEEeccCCCCCCcceEEEEE--------CCCCC----E-------------------EEEECCCCEEEEeCCCCe
Confidence 98776532211000 01 333321 00110 0 123445568888887766
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec-------cCcCeEEEEEcCCCcEEEE
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH-------HTKKLTVLAFHPTQRIVAA 298 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~ 298 (762)
............|.++...++|.+.+++.++.+..|+..+++.. ..... ....|.++...++|.+.+
T Consensus 205 ~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~-----~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi- 278 (795)
T 4a2l_A 205 FEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK-----NYLHSPSNPKSISSNYIRSLAMDSQNRLWI- 278 (795)
T ss_dssp EEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE-----EECCCTTCTTSCSCSBEEEEEECTTSCEEE-
T ss_pred EEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE-----EeecCCCCccccCCCeEEEEEEcCCCCEEE-
Confidence 54211122346788898888998888776667999998876542 22111 235699999998887544
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEE
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
|+.+ .|.+|+..+++...... .. .....-....|.++...++|. |-.|+.++-|.
T Consensus 279 gt~~-Gl~~~~~~~~~~~~~~~-~~----------------------~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~ 333 (795)
T 4a2l_A 279 GTFN-DLNIYHEGTDSFASYSS-NP----------------------VENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLN 333 (795)
T ss_dssp EESS-CEEEEETTTTEEEEECC-CT----------------------TSTTSCSSSCEEEEEECTTSC-EEEEESSSCEE
T ss_pred EeCC-hhheEcCCCCeEEEEec-CC----------------------CCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeE
Confidence 4445 58899876553211000 00 000001235689999988886 44566667788
Q ss_pred EEecCCCceeccCC-------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 379 VWQLDTGKKKFLPR-------IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 379 ~wd~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.++..++....... ....|.++...++|.+ .+|+.++.+..|+..+++..........+. .......|.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~--~~l~~~~v~~ 410 (795)
T 4a2l_A 334 YYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESA--RGIGSNNIKA 410 (795)
T ss_dssp EECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC--------CCSCSCEEE
T ss_pred EeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcc--cCCCCccEEE
Confidence 99877665432211 2346899998888764 456778789999988765443321110000 0001257889
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
++..++++.|.+|+.++-|..||..+++.. .+..... ......|.++...++|++.+.. . +.+
T Consensus 411 i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~-----~l~~~~v~~i~~d~~g~lwigt----------~-~Gl 473 (795)
T 4a2l_A 411 VYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNS-----QLVNENVYAILPDGEGNLWLGT----------L-SAL 473 (795)
T ss_dssp EEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTS-----CCSCSCEEEEEECSSSCEEEEE----------S-SCE
T ss_pred EEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCC-----CcCCCeeEEEEECCCCCEEEEe----------c-Cce
Confidence 999999885666777667999998876422 2211000 0114568999998888866554 3 358
Q ss_pred EEEEecCCCceeEEEEEe-ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCC
Q 040987 532 KFWVSGTQNKEFTLSTIV-YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKA 610 (762)
Q Consensus 532 ~iwd~~~~~~~~~~~~~~-~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (762)
.+||..+++... +.... ..+.....|.++...++|++.+.. . +-+..||..++.. ..... . .........
T Consensus 474 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~-~----~~~~l~~~~ 544 (795)
T 4a2l_A 474 VRFNPEQRSFTT-IEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASI-L----PVSNVTKLF 544 (795)
T ss_dssp EEEETTTTEEEE-CCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCC-S----CSCGGGGSC
T ss_pred eEEeCCCCeEEE-ccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecC-C----CCCCCCCCe
Confidence 888877653221 11000 001113578999999998876654 4 4588899876554 11100 0 001123467
Q ss_pred eEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec--c-ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 611 MTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG--E-TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 611 i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~--~-~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
|.++...++|++.+.... .+..||..+++....-. + ....|.++...++|.+.+++ ..| |..||..+++.
T Consensus 545 i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G---l~~~~~~~~~~ 617 (795)
T 4a2l_A 545 TNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NRG---ISCFNPETEKF 617 (795)
T ss_dssp EEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TTE---EEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CCc---eEEEcCCCCcE
Confidence 899999999986654444 68899988776543221 1 13458889998888766655 455 88888876653
No 196
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=5.9e-11 Score=135.09 Aligned_cols=515 Identities=9% Similarity=0.010 Sum_probs=307.6
Q ss_pred eEEEEecCCcceeeeecCcc----cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCc-cc-eeEEEEeCCCC
Q 040987 54 LCRTAEYPAVNSKMIRGGRS----YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHK-AP-VTTVIVVPAST 127 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~~~h~~----~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~-~~-V~~v~~s~~~~ 127 (762)
-+..||..+.+...+..... .|.+ +...++|++.+... +.|..||.++++......++. .. |.++...+++
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~~~~~~i~~-i~~d~~g~lwi~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g- 184 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKNGKHLQVNG-IEEISPEQLLISTP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGD- 184 (795)
T ss_dssp CEEEEETTTTEEEEECCEETTEECCCCE-EEEEETTEEEEEET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETT-
T ss_pred chheeCCCCCeEEeccccccCCCceEEE-EEECCCCCEEEEEC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCC-
Confidence 36778877665554433221 1775 88888887766544 669999988776543222211 23 8899998888
Q ss_pred cccceeeeEEeeecCCeEEEEeCCCcceEEEEEe--ccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCcc
Q 040987 128 PATKILSYCWTASLDGTIKYWDFSVPELLKTIDV--KFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKK 205 (762)
Q Consensus 128 ~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
.+.+ ++.++.|..||..+++....... ...+.++.. ..+.. +
T Consensus 185 ------~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~----------------------d~~g~-l------ 228 (795)
T 4a2l_A 185 ------QIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQ----------------------QSPTR-I------ 228 (795)
T ss_dssp ------EEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEE----------------------EETTE-E------
T ss_pred ------CEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEE----------------------cCCCC-E------
Confidence 3333 55555689999887765432111 112333311 11100 0
Q ss_pred CCCCCCccccEEEEecCCccccceeee------ccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeee-
Q 040987 206 EPRPNTMNGRICKCNLTESRLAGGVTL------AEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITL- 278 (762)
Q Consensus 206 ~~~~g~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~- 278 (762)
..|+.++.+.+||..+++...-... -....|.++...++|.+.++..+ .|.+|+..++... ....
T Consensus 229 --wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~-----~~~~~ 300 (795)
T 4a2l_A 229 --WVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFA-----SYSSN 300 (795)
T ss_dssp --EEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEE-----EECCC
T ss_pred --EEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEE-----EEecC
Confidence 2234455688888877654411111 12356899999999998877655 6899998776542 2211
Q ss_pred ------ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 279 ------HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 279 ------~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
-....|.++...++|. |-.|+.++-|..|+........ .... .....+ .
T Consensus 301 ~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~---------------------~~~~~l--~ 355 (795)
T 4a2l_A 301 PVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNI---------------------PYKNSL--S 355 (795)
T ss_dssp TTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCC---------------------TTSSSC--S
T ss_pred CCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCC---------------------CCCCCC--C
Confidence 1235799999999887 4456677779999865432110 0000 000000 2
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC---------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR---------IGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
...|.++...++|+ |..|+.++-|..|+..+++...... ....|.++...++|+.|.+|+.++.+..||.
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 34688898888876 4456677779999988876643321 1356889998888885777778788999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.+++......... ......|.++...++|++.+. +.+| +..||..+++.. .+... ..+..-....|.+
T Consensus 435 ~~~~~~~~~~~~~------~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~~~-~~~~~---~~~~~~~~~~i~~ 502 (795)
T 4a2l_A 435 NSGQVENFNQRNS------QLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQRSFT-TIEKE---KDGTPVVSKQITT 502 (795)
T ss_dssp TTCCEEEECTTTS------CCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTTEEE-ECCBC---TTCCBCCCCCEEE
T ss_pred CCCcEEEeecCCC------CcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCCeEE-Ecccc---ccccccCCceEEE
Confidence 8876543322110 011257888998888875554 4444 888998765321 11110 0000001356899
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE-eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI-VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
+...++|++.+.. . +.+..||..+... .+... ...+-....|.++...++|.+.+.. .. -+..|
T Consensus 503 i~~d~~g~lWigt----------~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~ 567 (795)
T 4a2l_A 503 LFRDSHKRLWIGG----------E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCF 567 (795)
T ss_dssp EEECTTCCEEEEE----------S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEE
T ss_pred EEECCCCCEEEEe----------C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeE
Confidence 9999999866654 3 3588888876643 21100 0001114578999999998866544 34 58889
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecccc----Cce--eEEE
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETL----TPI--MNMS 656 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~----~~v--~~~~ 656 (762)
|..++....... ........|.++...++|++.+++ ++.|..|+.++++.. .+.... ..+ .++.
T Consensus 568 d~~~~~~~~~~~--------~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~ 637 (795)
T 4a2l_A 568 NEKDKQIKRYNT--------TNGLPNNVVYGILEDSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYC 637 (795)
T ss_dssp ETTTTEEEEECG--------GGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEE
T ss_pred CCCCCcEEEeCC--------CCCCchhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCcee
Confidence 877654332110 001124568899999999876655 566888998877654 332221 122 4666
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
..++|+ |..++.+| +..++.+.
T Consensus 638 ~~~~G~-l~~g~~~G---l~~~~p~~ 659 (795)
T 4a2l_A 638 RTSVGQ-MYFGGING---ITTFRPEL 659 (795)
T ss_dssp ECTTSC-EEEEETTE---EEEECGGG
T ss_pred ECCCCe-EEEecCCc---eEEEcHHH
Confidence 777876 55667777 77777653
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.65 E-value=2.1e-12 Score=128.54 Aligned_cols=283 Identities=11% Similarity=-0.013 Sum_probs=193.4
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
+...+.+++++++|+.+++...++.|.+||.. ++... .....+...+..+
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-----------------------------~~~~~~~~~~~~i 62 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-----------------------------YPLPTPDAKVMCL 62 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-----------------------------EECSSTTCCEEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-----------------------------ecCCcccCceeeE
Confidence 44678999999999977776667899999976 32111 1111234568899
Q ss_pred EEecCCCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC
Q 040987 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
+++++|+.+++...++.|..||.. ++... .......+..+++.++|+++++...++.|.+||. +++.........
T Consensus 63 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~- 139 (299)
T 2z2n_A 63 TISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK- 139 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-
T ss_pred EECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC-
Confidence 999999888777667899999986 44322 2234557899999999988777767889999998 554433221111
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
...+..++++++++.+++...++.|..||. +++.. .+..... ...+..++++++|++.++..
T Consensus 140 --------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~--------~~~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 140 --------GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-EFKIPTP--------ASGPVGITKGNDDALWFVEI 201 (299)
T ss_dssp --------TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSST--------TCCEEEEEECTTSSEEEEET
T ss_pred --------CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-EeeCCCC--------CCcceeEEECCCCCEEEEcc
Confidence 146789999999988777767789999998 55432 2211110 34578999999998776664
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
..+.|.+||. +++.. .+. ...+ ...+.+++++++|+++++...++.|..||.. +... ..
T Consensus 202 ---------~~~~i~~~~~-~g~~~-~~~---~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~-~~---- 260 (299)
T 2z2n_A 202 ---------IGNKIGRITT-SGEIT-EFK---IPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIE-EY---- 260 (299)
T ss_dssp ---------TTTEEEEECT-TCCEE-EEE---CSST-TCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEE-EE----
T ss_pred ---------CCceEEEECC-CCcEE-EEE---CCCC-CCCceeEEECCCCCEEEeccCCceEEEECCC-CceE-EE----
Confidence 5678999998 55422 221 1233 5678999999999877766567889999983 3321 11
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCe
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNV 640 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~ 640 (762)
....+...+.++++ ++|++.++...+.+..++.++++
T Consensus 261 -----~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 261 -----PIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp -----ECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred -----eCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence 01123467889999 99988777666778888877653
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.63 E-value=2.2e-12 Score=131.35 Aligned_cols=284 Identities=9% Similarity=-0.071 Sum_probs=185.8
Q ss_pred EEcCCCcEEEEeec--CC---eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 288 AFHPTQRIVAAGDV--TG---RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 288 ~~sp~~~~l~~~~~--dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
...|+++++++... .. .|.++|..+++.. ..+.....+ .++++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~------------------------------~~i~~g~~p--~i~~s 74 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL------------------------------GHVNGGFLP--NPVAA 74 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE------------------------------EEecCCCCC--CeEEC
Confidence 34467777776643 22 7899998776533 223222222 89999
Q ss_pred cCCCEEEEEe----------cCCeEEEEecCCCceeccCCC--------CCCeEEEEeCCCCCeEEEEec--CCcEEEEE
Q 040987 363 SDGAYLYSGG----------KEGVLVVWQLDTGKKKFLPRI--------GSPLLYFTESPDPSLSSISCA--DNQVHLLK 422 (762)
Q Consensus 363 ~~g~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~--d~~i~i~d 422 (762)
|||++++.+. .++.|.+||..+.+....... ......++++|||++|+++.. ++.|.++|
T Consensus 75 pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD 154 (373)
T 2mad_H 75 HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE
Confidence 9999999885 357899999998776432211 123457999999999999874 47899999
Q ss_pred cCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 423 MPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 423 ~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
.+++.+.. +... .++.+.|++ +.+++.+.||.+.++|. +++......... .. .. ....
T Consensus 155 -~t~~~~~~~i~~~--------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~-~~-~~--~~p~ 214 (373)
T 2mad_H 155 -QGGSSDDQLLSSP--------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA-ML-TA--AQNL 214 (373)
T ss_pred -CCCCEEeEEcCCC--------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc-cc-cC--Ccce
Confidence 99988777 5431 124455655 34566678899999999 776553321100 00 00 0111
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee-------cCCCCCceEEEEEcCCCCeEEEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY-------EPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
.....+.+++..++..+ ..+.+.+.|+.+..... +..... .+........++++||++.++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~---------~~~~v~vid~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~ 284 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPV---------YSGKILQADISAAGATN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL 284 (373)
T ss_pred eecceeEecCCEEEEEc---------CCceEEEEeccCCcceE-eeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence 23456777766655554 45688888887553221 111100 00002234457899999888776
Q ss_pred eC----------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc--CCeEEEEeCCCCe
Q 040987 574 SY----------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA--ETVITLWDPDRNV 640 (762)
Q Consensus 574 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~--d~~i~iwd~~~~~ 640 (762)
.. ++.|.++|..+.+....++ -.....+++|+|||+ +++++. ++.|.++|+.+++
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~------------~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred eccCCcccccCCCCeEEEEECCCCEEEEEEE------------CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 53 3579999999888766653 234578999999999 677665 7999999999999
Q ss_pred EEEEe
Q 040987 641 LVAVI 645 (762)
Q Consensus 641 ~~~~l 645 (762)
.+..+
T Consensus 353 vv~~i 357 (373)
T 2mad_H 353 QDQST 357 (373)
T ss_pred EEeee
Confidence 98873
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.6e-13 Score=133.60 Aligned_cols=242 Identities=11% Similarity=0.049 Sum_probs=180.6
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
.++.|++++.++.|.+||.++++.+..+..+.. ..+.++.++|+|++++ +.++.|+.||. +++.+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---------WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---------CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---------CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence 457888899999999999999999999876431 2467899999999888 45678999999 78887776
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc-eeEEEEEEecCCCceeEEEEEee-cCCCCCceEEEE
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS-LVCLKFWVSGTQNKEFTLSTIVY-EPHRDAGISAVA 562 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~-~~h~~~~v~~~~ 562 (762)
.... ...+.++.+.++|+++++.+ . ++.+..+|. +++.+..+..... ..+ ......++
T Consensus 72 ~~~~---------~~~~~~~~~~~dG~~lv~~~---------~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~-~~~~~~v~ 131 (276)
T 3no2_A 72 AAPA---------GCEMQTARILPDGNALVAWC---------GHPSTILEVNM-KGEVLSKTEFETGIERP-HAQFRQIN 131 (276)
T ss_dssp ECCT---------TCEEEEEEECTTSCEEEEEE---------STTEEEEEECT-TSCEEEEEEECCSCSSG-GGSCSCCE
T ss_pred cCCC---------CccccccEECCCCCEEEEec---------CCCCEEEEEeC-CCCEEEEEeccCCCCcc-cccccCce
Confidence 6421 24578899999999999887 4 677777775 5555555432100 111 22455677
Q ss_pred EcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 563 FHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 563 ~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
+.++|+++++...++.|..||.. ++.+..+. ....+.++.+.++|++++++. ++.|..+|.++|+.
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~------------~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVK------------LSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEE------------CSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEE------------CCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 89999999999999999999998 76655442 123455678889999998887 77999999999999
Q ss_pred EEEecccc------CceeEEEEeCCCCEEEEEEcC--------CCCeEEEEEC-CCCceeeEEEEee
Q 040987 642 VAVIGETL------TPIMNMSFVGSSEYLVATSWG--------SKPQLSVWNM-SKLSISWSYLLHV 693 (762)
Q Consensus 642 ~~~l~~~~------~~v~~~~~s~dg~~l~s~~~d--------~~~~v~vwd~-~~~~~~~~~~~~~ 693 (762)
+..+..+. ..+..+...++|..+++.+.. +. .+++.+ .+|+++|+|....
T Consensus 199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~--~~~~~~~~~g~~~W~~~~~~ 263 (276)
T 3no2_A 199 VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKH--PQLVEIDSEGKVVWQLNDKV 263 (276)
T ss_dssp EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCC--CSEEEECTTSBEEEEECCTT
T ss_pred EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCC--ceEEEECCCCCEEEEecCcc
Confidence 88886432 127888899999988887522 12 456666 6889999876554
No 200
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.62 E-value=2e-13 Score=139.03 Aligned_cols=291 Identities=12% Similarity=0.007 Sum_probs=189.0
Q ss_pred cCCCEEEEEecC-----CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEcCCce
Q 040987 363 SDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKMPSME 427 (762)
Q Consensus 363 ~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~~~~~ 427 (762)
+++++++..... +.|.++|..+++.+.....+..- .++++|||++++++. .++.|.++|..+++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 466766666542 69999999999886544433334 899999999998886 36789999999999
Q ss_pred EEEEEccC-CCCCCCCCcccCceeeEEEeCCCCEEEEeec--CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 428 IIRSISGI-KLPCPLPEEYKGLCRDIAFNHDGGLVALRAE--NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 428 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
.+..+.-. .... ........++++|||++++++.. ++.|.++|+.+.+.+.++.... . .
T Consensus 161 vv~~I~v~g~~r~----~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----------~---~ 222 (426)
T 3c75_H 161 PIADIELPDAPRF----LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----------C---Y 222 (426)
T ss_dssp EEEEEEETTCCCC----CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------E---E
T ss_pred EEEEEECCCcccc----ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----------c---e
Confidence 98887532 0000 00023467899999999998864 5789999999998877765421 0 1
Q ss_pred EEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCc-eEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 505 ALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAG-ISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 505 ~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~-v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
...|++ +.+++.+ .|+.+.+.+..+++...... ..+... ... ...+.+++++..++..+..+.+.+.
T Consensus 223 ~~~p~g~~~~v~~~---------~dG~~~~V~~~~~~v~~~~~-~~~~v~-~~p~~~~~~~~~dg~~~~~~s~~g~V~Vi 291 (426)
T 3c75_H 223 HIFPASPTVFYMNC---------RDGSLARVDFADGETKVTNT-EVFHTE-DELLINHPAFSLRSGRLVWPTYTGKIFQA 291 (426)
T ss_dssp EEEEEETTEEEEEE---------TTSSEEEEECCTTCCEEEEC-CCCSCT-TSCBCSCCEECTTTCEEEEEBTTSEEEEE
T ss_pred eeccCCCcEEEEEc---------CCCCEEEEECCCCcEEEEee-eeeccC-CCceeeEeeecCCCCEEEEEeCCCcEEEE
Confidence 223332 2223333 44555555553333221110 001111 111 1235789999888888888999999
Q ss_pred EcccccccccccCCceeeee----ecccCCCCeEEEEEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEEEecc
Q 040987 583 ICNDELQQKDLQSSGWSCHA----VGSYKKKAMTAAAFSADGSVLAVAA-----------ETVITLWDPDRNVLVAVIGE 647 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~~l~~ 647 (762)
|..+....... .|.... ...........++++||++.+.+.. ++.|.++|..+++.+..+..
T Consensus 292 D~~~~~~~v~~---~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 292 DLTAEGATFRA---PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EECSSCEEECC---CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred eccCCceEEee---eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 98654422111 111000 0000011222478999998777653 24799999999999998864
Q ss_pred ccCceeEEEEeCCCC-EEEEEEc-CCCCeEEEEECCCCceeeEE
Q 040987 648 TLTPIMNMSFVGSSE-YLVATSW-GSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 648 ~~~~v~~~~~s~dg~-~l~s~~~-d~~~~v~vwd~~~~~~~~~~ 689 (762)
. ....+++|+|||+ +|+++.. ++. |.++|+.+++.+.++
T Consensus 369 g-~~P~gia~spDg~~~lyv~n~~s~~--VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 G-HEIDSINVSQDAEPLLYALSAGTQT--LHIYDAATGEELRSV 409 (426)
T ss_dssp E-EEECEEEECCSSSCEEEEEETTTTE--EEEEETTTCCEEEEE
T ss_pred C-CCcCeEEEccCCCEEEEEEcCCCCe--EEEEECCCCCEEEEe
Confidence 3 2478999999999 8888884 666 999999999998766
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=1.3e-13 Score=155.50 Aligned_cols=285 Identities=10% Similarity=0.007 Sum_probs=179.5
Q ss_pred ecCCCEEEEEecCC-----eEEEEecC---CCceecc------C-CCCCCeEEEEeCCCCCeEEEEecC-----CcEEEE
Q 040987 362 SSDGAYLYSGGKEG-----VLVVWQLD---TGKKKFL------P-RIGSPLLYFTESPDPSLSSISCAD-----NQVHLL 421 (762)
Q Consensus 362 s~~g~~l~s~~~dg-----~i~~wd~~---~~~~~~~------~-~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~ 421 (762)
+|+|++++....++ .+++.+.. .++...+ . .+...+..++|||||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48999888766543 34444544 4443322 1 112257789999999999887654 359999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc--------------eEEEEEcCCCCceeeEEee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY--------------CIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~ 487 (762)
|+.+++.+..... . ..+..++|+|| +.|+.++.++ .|++|++.++.....+...
T Consensus 195 dl~tg~~~~~~~~-~----------~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 195 GVADGKPLADELK-W----------VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp ETTTCCEEEEEEE-E----------EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred ECCCCCCCCccCC-C----------ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 9999887654211 1 22357899999 9998887654 3889998776543222222
Q ss_pred cccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC--CceeEEEEEeecCCCCCceEEEEEcC
Q 040987 488 ERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ--NKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
...+ ...+..+.|||||++|+....+ +......|++||+.++ .....+ ..+ ...+... ++|
T Consensus 263 ~~~~------~~~~~~~~~SpDG~~l~~~~~~----~~~~~~~l~~~d~~~~~~~~~~~l-----~~~-~~~~~~~-~~~ 325 (741)
T 1yr2_A 263 TPEL------PKRGHGASVSSDGRWVVITSSE----GTDPVNTVHVARVTNGKIGPVTAL-----IPD-LKAQWDF-VDG 325 (741)
T ss_dssp CTTC------TTCEEEEEECTTSCEEEEEEEC----TTCSCCEEEEEEEETTEECCCEEE-----ECS-SSSCEEE-EEE
T ss_pred cCCC------CeEEEEEEECCCCCEEEEEEEc----cCCCcceEEEEECCCCCCcccEEe-----cCC-CCceEEE-Eec
Confidence 1111 2347889999999999888732 1002458999999876 312233 233 3344444 348
Q ss_pred CCCeEEEEeCC----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC-CC
Q 040987 566 NRRAAVSSSYG----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD-RN 639 (762)
Q Consensus 566 d~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~-~~ 639 (762)
+|+.|+..+.+ +.|.+||+.++. . .|.. ....+...+..++|+ ++.++++.. |+..+||.++ ++
T Consensus 326 dg~~l~~~s~~~~~~~~l~~~d~~~~~-~------~~~~--l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 395 (741)
T 1yr2_A 326 VGDQLWFVSGDGAPLKKIVRVDLSGST-P------RFDT--VVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG 395 (741)
T ss_dssp ETTEEEEEECTTCTTCEEEEEECSSSS-C------EEEE--EECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCc-c------ccEE--EecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 99988888764 459999987642 0 1111 112334456678887 566677766 8876666443 45
Q ss_pred eEEEEecc-ccCceeEEEEeCCCCEEEEEEc--CCCCeEEEEECCCCce
Q 040987 640 VLVAVIGE-TLTPIMNMSFVGSSEYLVATSW--GSKPQLSVWNMSKLSI 685 (762)
Q Consensus 640 ~~~~~l~~-~~~~v~~~~~s~dg~~l~s~~~--d~~~~v~vwd~~~~~~ 685 (762)
+....+.. +...+..+.++||++.|+.... ...+.|++||+.+++.
T Consensus 396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55666654 3566889999999887664422 2223499999998874
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=2.3e-13 Score=133.25 Aligned_cols=241 Identities=8% Similarity=-0.078 Sum_probs=164.9
Q ss_pred CeEEEEeCCCCCeEE-EEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 396 PLLYFTESPDPSLSS-ISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
...+++++++|++++ +...++.|.+|+..+........... ..+.+++++++++++++.. ++.|..||
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~p~~i~~~~~g~l~v~~~-~~~i~~~d 93 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL----------YQPQGLAVDGAGTVYVTDF-NNRVVTLA 93 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC----------CSCCCEEECTTCCEEEEET-TTEEEEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc----------CCcceeEECCCCCEEEEcC-CCEEEEEe
Confidence 678899999998666 43667899999876544322111111 3567899999998666655 88999999
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
....... .+.. .. ...+..++++++|+++++.. .++.|.+|+..+....... ...
T Consensus 94 ~~~~~~~-~~~~--~~-------~~~p~~i~~~~~g~l~v~~~---------~~~~i~~~~~~~~~~~~~~-----~~~- 148 (270)
T 1rwi_B 94 AGSNNQT-VLPF--DG-------LNYPEGLAVDTQGAVYVADR---------GNNRVVKLAAGSKTQTVLP-----FTG- 148 (270)
T ss_dssp TTCSCCE-ECCC--CS-------CSSEEEEEECTTCCEEEEEG---------GGTEEEEECTTCCSCEECC-----CCS-
T ss_pred CCCceEe-eeec--CC-------cCCCcceEECCCCCEEEEEC---------CCCEEEEEECCCceeEeec-----ccc-
Confidence 8765322 1111 00 24578999999998777665 5678999975544332111 122
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITL 633 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~i 633 (762)
...+.+++++|+|+++++...++.|.+||..+....... ..+...+.+++++++|.++++.. ++.|.+
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-----------FTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-----------CSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec-----------ccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 346778999999997777777789999998765433221 11235678999999997777766 889999
Q ss_pred EeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 634 WDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 634 wd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
|+..+.........+...+.+++++++|+++++...++. |+++++...+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~--v~~~~~~~~~~ 267 (270)
T 1rwi_B 218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR--VVKLTSLEHHH 267 (270)
T ss_dssp ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE--EEEECCCGGGS
T ss_pred EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE--EEEEcCCCccc
Confidence 999876544333233456899999999998888777877 99999876543
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=4.1e-13 Score=131.39 Aligned_cols=241 Identities=11% Similarity=-0.011 Sum_probs=166.6
Q ss_pred CeEEEEEcCCCcEEE-EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 283 KLTVLAFHPTQRIVA-AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
...+++++++|+.++ +...++.|.+|+..+..... ....+...+.++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~------------------------------~~~~~~~~p~~i~~ 74 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV------------------------------LPFNGLYQPQGLAV 74 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE------------------------------CCCCSCCSCCCEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce------------------------------EeeCCcCCcceeEE
Confidence 678999999999766 54678899999875432111 01122345778999
Q ss_pred ecCCCEEEEEecCCeEEEEecCCCceeccC-CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLDTGKKKFLP-RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
+++|+.+++.. ++.|.+||..+....... .....+..++++++|+++++...++.|.+|+..+...........
T Consensus 75 ~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---- 149 (270)
T 1rwi_B 75 DGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL---- 149 (270)
T ss_dssp CTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC----
T ss_pred CCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccC----
Confidence 99998666555 889999998876554333 223568899999999877776678899999766543332211111
Q ss_pred CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
..+..++++++++++++...++.|.+||.......... .. . ...+..++++++|.++++..
T Consensus 150 ------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---~~-~------~~~p~~i~~d~~g~l~v~~~--- 210 (270)
T 1rwi_B 150 ------NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP---FT-D------ITAPWGIAVDEAGTVYVTEH--- 210 (270)
T ss_dssp ------CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC---CS-S------CCSEEEEEECTTCCEEEEET---
T ss_pred ------CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec---cc-C------CCCceEEEECCCCCEEEEEC---
Confidence 35678999999997777777789999998765432211 00 0 24578999999997666664
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
.++.|.+|+..+..... . ...+ ...+.+++++|+|+++++...++.|+++++...+.
T Consensus 211 ------~~~~v~~~~~~~~~~~~-~----~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 211 ------NTNQVVKLLAGSTTSTV-L----PFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp ------TTSCEEEECTTCSCCEE-C----CCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ------CCCcEEEEcCCCCccee-e----ccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 56789999987654322 1 1122 35689999999999888888899999999876553
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=1.4e-12 Score=126.98 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=137.4
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccCCce
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRT 315 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~ 315 (762)
.+.+++++|+|++++ +.++.|..||. +++.. .++.......+.++.+.+||+++++.+. ++.|..++..+ +.
T Consensus 38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~----W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~ 110 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SYSKGAKMITR-DGREL----WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKG-EV 110 (276)
T ss_dssp CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEE----EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-CE
T ss_pred CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEE----EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCC-CE
Confidence 467889999999988 56788999998 66643 2333233357889999999999998877 77888888643 32
Q ss_pred eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCC
Q 040987 316 FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS 395 (762)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 395 (762)
+..... -.....+......+++.++|+++++...++.|..||.+ |+.+.......
T Consensus 111 l~~~~~------------------------~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~ 165 (276)
T 3no2_A 111 LSKTEF------------------------ETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG 165 (276)
T ss_dssp EEEEEE------------------------CCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS
T ss_pred EEEEec------------------------cCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC
Confidence 221100 00001122234556788999999999999999999998 88765444445
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA 465 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 465 (762)
....+...++|+.++++..++.|..+|..+|+.+..+.....+. ..-..+..++..++|+.+++.+
T Consensus 166 ~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~----~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 166 TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG----VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS----CCCSEEEEEEECTTSCEEEEEE
T ss_pred CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC----ccccccccceEcCCCCEEEEec
Confidence 56677888999999988888899999999999999986433110 0013467888899999888764
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.57 E-value=1.1e-12 Score=133.72 Aligned_cols=282 Identities=13% Similarity=0.082 Sum_probs=187.4
Q ss_pred cCCCEEEEEeC------CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeee----------cCCeEE
Q 040987 83 NDVKRLLVCTS------NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTAS----------LDGTIK 146 (762)
Q Consensus 83 ~dg~~la~~~~------~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s----------~d~~i~ 146 (762)
+|++++.+... +.|.++|.++++.+.++.--..+ .++++||| ++|+.+. .++.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDg-------k~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDG-------SFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTS-------SCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCC-------CEEEEEeccccccccCCCCCEEE
Confidence 67777776663 69999999999999999754455 89999999 4444443 467899
Q ss_pred EEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccc
Q 040987 147 YWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRL 226 (762)
Q Consensus 147 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~ 226 (762)
++|..+++.+.++....+-
T Consensus 153 viD~~t~~vv~~I~v~g~~------------------------------------------------------------- 171 (426)
T 3c75_H 153 VFDPVTFLPIADIELPDAP------------------------------------------------------------- 171 (426)
T ss_dssp EECTTTCCEEEEEEETTCC-------------------------------------------------------------
T ss_pred EEECCCCcEEEEEECCCcc-------------------------------------------------------------
Confidence 9999998888776532000
Q ss_pred cceeeeccCCCceEEEECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC-cEEEEeecC
Q 040987 227 AGGVTLAEMKEPQVITISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ-RIVAAGDVT 302 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d 302 (762)
..........++|+|||++|.++. ++.|.+.|+.+.+.. ..+..+. +....|++ +.+++.+.|
T Consensus 172 ----r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv----~~I~v~g-----~~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 172 ----RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD----RMLDVPD-----CYHIFPASPTVFYMNCRD 238 (426)
T ss_dssp ----CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE----EEEECCS-----EEEEEEEETTEEEEEETT
T ss_pred ----ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE----EEEEcCC-----ceeeccCCCcEEEEEcCC
Confidence 000012345679999999998653 578999999998754 1222111 12333433 344555667
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc-eeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE-VSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
|.+.+.+..+++...... ..+.-...+ ...+.+.+++..++.....+.+.+.|
T Consensus 239 G~~~~V~~~~~~v~~~~~--------------------------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 239 GSLARVDFADGETKVTNT--------------------------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp SSEEEEECCTTCCEEEEC--------------------------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred CCEEEEECCCCcEEEEee--------------------------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 777777764433221000 000001111 12356788888888778889999999
Q ss_pred cCCCceeccCC-------------CCCCeEEEEeCCCCCeEEEEec----------CCcEEEEEcCCceEEEEEccCCCC
Q 040987 382 LDTGKKKFLPR-------------IGSPLLYFTESPDPSLSSISCA----------DNQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 382 ~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
........... .......++++|+++++++... .+.|.++|..+.+.+.++...
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--- 369 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--- 369 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---
Confidence 87654321110 1112223688999998887643 357999999999999988643
Q ss_pred CCCCCcccCceeeEEEeCCCC-EEEEee-cCceEEEEEcCCCCceeeE
Q 040987 439 CPLPEEYKGLCRDIAFNHDGG-LVALRA-ENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~ 484 (762)
.....++|+||++ ++++.. .++.|.++|+.+.+.+.++
T Consensus 370 --------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 370 --------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp --------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred --------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 2468999999999 787777 5899999999999887775
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=5.6e-12 Score=126.40 Aligned_cols=248 Identities=12% Similarity=0.078 Sum_probs=167.3
Q ss_pred eccccceeEEEEecCCCEEEE-------EecCCeEEEEecCCCceeccCC-----CCCCeEEEEeCCC-CCeEEEEecCC
Q 040987 350 HWHPSEVSVLIFSSDGAYLYS-------GGKEGVLVVWQLDTGKKKFLPR-----IGSPLLYFTESPD-PSLSSISCADN 416 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s-------~~~dg~i~~wd~~~~~~~~~~~-----~~~~v~~~~~s~~-~~~l~~~~~d~ 416 (762)
...-....+++|+++|+.+++ ...++.|.+||..+++...+.. +...+..++++++ |++++ ++..+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCC
Confidence 334445688999999987777 5677899999988887654332 4467889999999 66554 44555
Q ss_pred cEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------------ceEEEEEcCCCCc
Q 040987 417 QVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------------YCIHFYSLLDDRG 480 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------g~i~i~d~~~~~~ 480 (762)
.|.+||.. ++.... ...... .....+.+++++++|+++++...+ +.|..|+.. ++.
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEG------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTS------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred CEEEEeCC-CCEEEEEeccCCC------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 89999998 665433 221110 011357899999999887776654 567777765 332
Q ss_pred eeeEEeecccccCCCCcceeEEEEEEe----cCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEEE-EeecCCC
Q 040987 481 ISEVQVCERNHQPGDDVTVVVTLVALS----QDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLST-IVYEPHR 554 (762)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~-~~~~~h~ 554 (762)
..+... ......++++ |+++.+.++.. .++.|.+|+.. ++... .... ..+.++
T Consensus 165 -~~~~~~----------~~~~~~i~~~~~~d~dg~~l~v~~~--------~~~~i~~~~~~~~g~~~-~~~~~~~~~~~- 223 (314)
T 1pjx_A 165 -IQVDTA----------FQFPNGIAVRHMNDGRPYQLIVAET--------PTKKLWSYDIKGPAKIE-NKKVWGHIPGT- 223 (314)
T ss_dssp -EEEEEE----------ESSEEEEEEEECTTSCEEEEEEEET--------TTTEEEEEEEEETTEEE-EEEEEEECCCC-
T ss_pred -EEeccC----------CCCcceEEEecccCCCCCEEEEEEC--------CCCeEEEEECCCCCccc-cceEEEECCCC-
Confidence 222111 2236788999 99977666542 56789999987 33211 1111 112233
Q ss_pred C-CceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeE
Q 040987 555 D-AGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVI 631 (762)
Q Consensus 555 ~-~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i 631 (762)
. .....++++++|+++++...++.|.+||..+++..... ..+...+.+++|+|+|+.|.+++ ++.|
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-----------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l 292 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-----------RCPFEKPSNLHFKPQTKTIFVTEHENNAV 292 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-----------ECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-----------eCCCCCceeEEECCCCCEEEEEeCCCCeE
Confidence 3 56788999999998888878889999998866544332 12346789999999999666554 6799
Q ss_pred EEEeCCC
Q 040987 632 TLWDPDR 638 (762)
Q Consensus 632 ~iwd~~~ 638 (762)
..|++..
T Consensus 293 ~~~~~~~ 299 (314)
T 1pjx_A 293 WKFEWQR 299 (314)
T ss_dssp EEEECSS
T ss_pred EEEeCCC
Confidence 9999875
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=1.9e-11 Score=121.58 Aligned_cols=278 Identities=11% Similarity=0.008 Sum_probs=190.7
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
....+.++++.++|+..++...++.|.+||.. ++... .......+..+++.++|+++++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 34567899999999887777678999999988 65533 22334678999999999877776667889999988 5543
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.+.... ....+..++++++++++++...++.|..+|.. ++.. .+..... ...+..++++++
T Consensus 96 -~~~~~~--------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~--------~~~~~~i~~d~~ 156 (300)
T 2qc5_A 96 -EYPLPQ--------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNK--------GSYPAFITLGSD 156 (300)
T ss_dssp -EEECSS--------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSST--------TCCEEEEEECTT
T ss_pred -EecCCC--------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCC--------CCCceeEEECCC
Confidence 222111 01467899999999888777667889999986 4332 2221111 345789999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
|++.++.. ..+.|..|+. +++.. .+. ...+ ...+..++++++|+++++....+.|.+||. ++..
T Consensus 157 g~l~v~~~---------~~~~i~~~~~-~g~~~-~~~---~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 157 NALWFTEN---------QNNSIGRITN-TGKLE-EYP---LPTN-AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp SSEEEEET---------TTTEEEEECT-TCCEE-EEE---CSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CCEEEEec---------CCCeEEEECC-CCcEE-Eee---CCCC-CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 99666654 4678999987 44322 121 1233 457889999999987777666778999998 3332
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE-EeccccCceeEEEEeCCCCEEEEE
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA-VIGETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~-~l~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
.... .......+.+++++++|++.++.. ++.|..||.. ++... .+......+.+++++++|++.++.
T Consensus 221 ~~~~----------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 221 SEYD----------IPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp EEEE----------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred EEEE----------CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence 2111 112346788999999999766665 7999999984 54332 233334568899999999866655
Q ss_pred EcCCCCeEEEEECC
Q 040987 668 SWGSKPQLSVWNMS 681 (762)
Q Consensus 668 ~~d~~~~v~vwd~~ 681 (762)
. . . |..+|.+
T Consensus 290 ~-~-~--i~~~~p~ 299 (300)
T 2qc5_A 290 K-C-K--IGKLNLN 299 (300)
T ss_dssp S-S-E--EEEEEEC
T ss_pred c-C-c--eEEeCCC
Confidence 4 3 3 7777753
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=3.1e-11 Score=120.07 Aligned_cols=278 Identities=13% Similarity=-0.004 Sum_probs=186.6
Q ss_pred cCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEe-eecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEE
Q 040987 70 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKY 147 (762)
Q Consensus 70 ~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~-~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~v 147 (762)
.....+.+ ++++++|++.++.. ++.|.+||.. ++... .+..+...+.++++.+++ .++++...++.|..
T Consensus 17 ~~~~~p~~-i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g-------~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 17 IPDSGPYG-ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG-------DIWFTENGANKIGK 87 (300)
T ss_dssp STTCCEEE-EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-------CEEEEETTTTEEEE
T ss_pred CCCCCcce-eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC-------CEEEEecCCCeEEE
Confidence 33445565 99999999888775 5999999987 65443 233445679999999999 55566666788999
Q ss_pred EeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccc
Q 040987 148 WDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLA 227 (762)
Q Consensus 148 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~ 227 (762)
||.. ++.. .+..
T Consensus 88 ~d~~-g~~~-~~~~------------------------------------------------------------------ 99 (300)
T 2qc5_A 88 LSKK-GGFT-EYPL------------------------------------------------------------------ 99 (300)
T ss_dssp ECTT-SCEE-EEEC------------------------------------------------------------------
T ss_pred ECCC-CCeE-EecC------------------------------------------------------------------
Confidence 9977 5432 1110
Q ss_pred ceeeeccCCCceEEEECCCCCEEEEEe-CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEE
Q 040987 228 GGVTLAEMKEPQVITISSSGKYFGIRK-QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306 (762)
Q Consensus 228 ~~~~~~~~~~v~~~~~spdg~~la~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 306 (762)
......+..+++.++|+++++.. ++.|..++.. ++.. ..........+.++++.++++..++...++.|.
T Consensus 100 ----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 100 ----PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY----EYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp ----SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred ----CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE----EccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 00123467889999999887664 7889999887 4432 111222456789999999999666665678899
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
.++. .++... .....+...+..+++.++|+..++....+.|.+||. +++
T Consensus 171 ~~~~-~g~~~~-----------------------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 171 RITN-TGKLEE-----------------------------YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp EECT-TCCEEE-----------------------------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred EECC-CCcEEE-----------------------------eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 9987 332111 111123346788999999987776666778999998 455
Q ss_pred eec--cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 387 KKF--LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 387 ~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
... .......+.+++++++|++.++...++.|..|+.. ++.. .+.... ....+.+++++++|+++++.
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~--------~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ-EYQLQT--------ENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECCS--------TTCCCCCEEECTTSCEEEEC
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE-EEECCc--------cCCccceeEeCCCCCEEEEc
Confidence 432 23345678899999999866665557899999984 4433 222111 01457889999999866655
Q ss_pred ecCceEEEEEcC
Q 040987 465 AENYCIHFYSLL 476 (762)
Q Consensus 465 ~~dg~i~i~d~~ 476 (762)
. . .|..+|..
T Consensus 290 ~-~-~i~~~~p~ 299 (300)
T 2qc5_A 290 K-C-KIGKLNLN 299 (300)
T ss_dssp S-S-EEEEEEEC
T ss_pred c-C-ceEEeCCC
Confidence 4 4 67777653
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.53 E-value=1.2e-12 Score=147.71 Aligned_cols=245 Identities=11% Similarity=-0.001 Sum_probs=159.5
Q ss_pred CceEEEECCCCCEEEEEeC------CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe------
Q 040987 237 EPQVITISSSGKYFGIRKQ------RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR------ 304 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~------ 304 (762)
.+..++|||||++||.+.+ ..|++||+.+++.. .. ..+...+..++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-----~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-----AD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAF 236 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-----EE-EEEEEESCCCEESTT-SEEEEEECCCC------
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-----Cc-cCCCceeccEEEECC-CEEEEEEecCccccccc
Confidence 4678899999999985522 36999999998853 11 112222357899999 98888876553
Q ss_pred --------EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC-
Q 040987 305 --------ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG- 375 (762)
Q Consensus 305 --------v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg- 375 (762)
|++|++.+++.-. ..+.....+...+..+.|+|||++|+..+.++
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~--------------------------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSAD--------------------------QPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGC--------------------------EEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccCCCCCEEEEEECCCCchhC--------------------------EEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 8888875543100 01111222333578899999999988877543
Q ss_pred ----eEEEEecCCC--c-eeccCCCCCCeEEEEeCCCCCeEEEEecC----CcEEEEEcCCc--eEEEEEccCCCCCCCC
Q 040987 376 ----VLVVWQLDTG--K-KKFLPRIGSPLLYFTESPDPSLSSISCAD----NQVHLLKMPSM--EIIRSISGIKLPCPLP 442 (762)
Q Consensus 376 ----~i~~wd~~~~--~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~--~~~~~~~~~~~~~~~~ 442 (762)
.|++||+.++ + ...+........... +|+|+.|+..+.+ +.|.+||+.++ +....+..+.
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~------ 363 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK------ 363 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS------
T ss_pred CCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC------
Confidence 8999999887 5 444444444444443 4899988887764 45999999874 3333333322
Q ss_pred CcccCceeeEEEeCCCCEEEEeecCceEEEEEcC-CCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL-DDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
..+..+.++ ++.++++...++..++|.+. +++....+... . ...+..+.++|+++.++.....
T Consensus 364 ----~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~---~------~~~v~~~~~s~d~~~l~~~~ss-- 427 (741)
T 1yr2_A 364 ----DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP---G------IGSASGLSGRPGDRHAYLSFSS-- 427 (741)
T ss_dssp ----SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS---S------SCEEEEEECCBTCSCEEEEEEE--
T ss_pred ----CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC---C------CeEEEEeecCCCCCEEEEEEcC--
Confidence 456677777 56677788888877776554 33333322210 0 4568889999999877654311
Q ss_pred ccCCCceeEEEEEEecCCC
Q 040987 522 EEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~ 540 (762)
....++|++||+.+++
T Consensus 428 ---~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 428 ---FTQPATVLALDPATAK 443 (741)
T ss_dssp ---TTEEEEEEEEETTTTE
T ss_pred ---CCCCCEEEEEECCCCc
Confidence 0145789999998775
No 210
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=3.7e-09 Score=119.97 Aligned_cols=501 Identities=8% Similarity=0.002 Sum_probs=286.9
Q ss_pred ecCCCeEEEEecCCcceeeeecC--------cccccCCceeec--CCCEEEEEeCCEEEEEEcccceEEeeec-----CC
Q 040987 49 ARSSGLCRTAEYPAVNSKMIRGG--------RSYVSSPPAFSN--DVKRLLVCTSNTVSIFSTSTGLQISSLE-----GH 113 (762)
Q Consensus 49 ~~~~g~i~~~~~~~~~~~~~~~h--------~~~v~~~~~~s~--dg~~la~~~~~~i~iwd~~~~~~~~~l~-----~h 113 (762)
|..++-+..||..+.+...+... ...|.+ +.... +|++.+...++-|..||.++++...... -.
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~-i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~ 161 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTH-ITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALP 161 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEE-EEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCS
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceE-EEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCC
Confidence 44554677888877665544211 124655 66666 6765554336678999988776543211 12
Q ss_pred ccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEe
Q 040987 114 KAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSV 193 (762)
Q Consensus 114 ~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (762)
...|.++...+++ .+. .++.++-|..||..+++... +.....
T Consensus 162 ~~~i~~i~~d~~g-------~lw-igt~~~Gl~~~~~~~~~~~~-~~~~~~----------------------------- 203 (781)
T 3v9f_A 162 SEQTWTATEAEDG-------KLY-IGHVEGGLSILSLNDKSVKH-FVHDPQ----------------------------- 203 (781)
T ss_dssp CCCEEEEEEEETT-------EEE-EEETTTEEEEEETTTTEEEE-ECC--------------------------------
T ss_pred ccceEEEEECCCC-------CEE-EEecCCCeEEEcCCCCceEe-eecCCC-----------------------------
Confidence 3468888888888 333 45556568889987765322 110000
Q ss_pred eeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhhee
Q 040987 194 EDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVM 273 (762)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~ 273 (762)
....-....|.++...++|.+.++..+ .+.+||..+++......
T Consensus 204 -----------------------------------~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~ 247 (781)
T 3v9f_A 204 -----------------------------------NPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHN 247 (781)
T ss_dssp ----------------------------------------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC---
T ss_pred -----------------------------------CcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEc
Confidence 000001245778888888988877655 79999987765430000
Q ss_pred eee--eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec
Q 040987 274 RKI--TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW 351 (762)
Q Consensus 274 ~~~--~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (762)
... .......|.++...++|.+ ..|+..+-|.+++..+............. +. . ......-
T Consensus 248 ~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~--~~------------~--~~~~~~l 310 (781)
T 3v9f_A 248 NPGNIHGALSSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEF--IR------------E--GDNNYSL 310 (781)
T ss_dssp --------CCCCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEE--EC------------B--CSSTTSB
T ss_pred CCCccccccCceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeecccccc--cc------------C--CCCCCCC
Confidence 000 0112457999999888874 44555456888987654321100000000 00 0 0000011
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC----------CCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR----------IGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
....|.++...++|. |-.|+.++-|..++..+........ ....|.++...++|.+ .+|+.++.+..|
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~ 388 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVF 388 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEE
Confidence 345688898888886 4556666778889887665433211 2346888988887764 456667789999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+..++.... +.... ......|.++...+++.+.+ ++.++-+..+|..+++.. .+. .. ......|
T Consensus 389 ~~~~~~~~~-~~~~~------~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~---~~----~~~~~~v 452 (781)
T 3v9f_A 389 ENGKRVAIY-NKENR------ELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIE---LE----KNELLDV 452 (781)
T ss_dssp ETTEEEEEC-C-----------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECC---ST----TTCCCCE
T ss_pred ECCCCeEEE-ccCCC------CCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-Eec---cC----CCCCCeE
Confidence 987543322 11000 01125788888888876544 666666889988765321 111 00 0014568
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
.++...++|++.+.. . +.+..||..+++............. ...|.++...++|.+.+ ++.++-+..
T Consensus 453 ~~i~~d~~g~lwigt----------~-~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~d~~g~lWi-gt~~~Gl~~ 519 (781)
T 3v9f_A 453 RVFYEDKNKKIWIGT----------H-AGVFVIDLASKKVIHHYDTSNSQLL-ENFVRSIAQDSEGRFWI-GTFGGGVGI 519 (781)
T ss_dssp EEEEECTTSEEEEEE----------T-TEEEEEESSSSSCCEEECTTTSSCS-CSCEEEEEECTTCCEEE-EESSSCEEE
T ss_pred EEEEECCCCCEEEEE----------C-CceEEEeCCCCeEEecccCcccccc-cceeEEEEEcCCCCEEE-EEcCCCEEE
Confidence 899888888765544 3 4688899877654322110000001 35789999999887665 444344778
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec--c-ccCceeEEEEe
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG--E-TLTPIMNMSFV 658 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~--~-~~~~v~~~~~s 658 (762)
||..+++...... ........|.++...++|++.+...+|.|..||..+++....-. + ....|.++...
T Consensus 520 ~~~~~~~~~~~~~--------~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d 591 (781)
T 3v9f_A 520 YTPDMQLVRKFNQ--------YEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISED 591 (781)
T ss_dssp ECTTCCEEEEECT--------TTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEEC
T ss_pred EeCCCCeEEEccC--------CCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEEC
Confidence 8876654322110 01123467899999999987665556655899988775432211 1 12358889888
Q ss_pred CCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 659 GSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 659 ~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
++|.+.++ +.+| |..++..+++
T Consensus 592 ~~g~lW~~-t~~G---l~~~~~~~~~ 613 (781)
T 3v9f_A 592 KNGNIWAS-TNTG---ISCYITSKKC 613 (781)
T ss_dssp SSSCEEEE-CSSC---EEEEETTTTE
T ss_pred CCCCEEEE-cCCc---eEEEECCCCc
Confidence 88875555 4555 7778877654
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=9.6e-12 Score=124.71 Aligned_cols=258 Identities=8% Similarity=-0.002 Sum_probs=162.7
Q ss_pred CCeEEEEeCCCCCeEEE-------EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeec
Q 040987 395 SPLLYFTESPDPSLSSI-------SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAE 466 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~-------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 466 (762)
....+++|++++.++++ ...++.|.+||..+++......... ..+...+..++++++ ++++++..
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------~~~~~~~~~i~~~~~~g~l~v~~~- 90 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV------NGYGGIPAGCQCDRDANQLFVADM- 90 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE------TTEECCEEEEEECSSSSEEEEEET-
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc------CCCCCCCceEEEecCCCcEEEEEC-
Confidence 34678999999987777 4678899999988776543322000 001146789999999 76555443
Q ss_pred CceEEEEEcCCCCceeeE-EeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc------ccCCCceeEEEEEEecCC
Q 040987 467 NYCIHFYSLLDDRGISEV-QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA------EEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~------~~~~~~d~~i~iwd~~~~ 539 (762)
.+.|.+||.. ++.. .+ ...... .....+.+++++++|+++++...... .......+.|..|+.. +
T Consensus 91 ~~~l~~~d~~-g~~~-~~~~~~~~~-----~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFE-EIAKKDSEG-----RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp TTEEEEEETT-SCEE-ECCSBCTTS-----CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred CCCEEEEeCC-CCEE-EEEeccCCC-----ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 4469999987 5432 11 110000 01245789999999988777641000 0000001566667655 3
Q ss_pred CceeEEEEEeecCCCCCceEEEEEc----CCCCeEEEE-eCCCcEEEEEcc-cccccccccCCceeeeeecccCC-CCeE
Q 040987 540 NKEFTLSTIVYEPHRDAGISAVAFH----PNRRAAVSS-SYGGDFKVWICN-DELQQKDLQSSGWSCHAVGSYKK-KAMT 612 (762)
Q Consensus 540 ~~~~~~~~~~~~~h~~~~v~~~~~s----pd~~~l~~~-~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 612 (762)
+.. .+. .+ ......++|+ |+++.++.+ ..++.|.+||.. ++...... .......+. ..+.
T Consensus 163 ~~~-~~~-----~~-~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~------~~~~~~~~~~~~p~ 229 (314)
T 1pjx_A 163 QMI-QVD-----TA-FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK------VWGHIPGTHEGGAD 229 (314)
T ss_dssp CEE-EEE-----EE-ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE------EEEECCCCSSCEEE
T ss_pred CEE-Eec-----cC-CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccce------EEEECCCCCCCCCC
Confidence 322 221 11 3356789999 999765555 467889999986 33211100 111112222 5578
Q ss_pred EEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcC-CCCeEEEEECCC
Q 040987 613 AAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWG-SKPQLSVWNMSK 682 (762)
Q Consensus 613 ~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d-~~~~v~vwd~~~ 682 (762)
.++++++|++.++.. ++.|.+||.++++.+..+..+...+.+++|++||+.|+.++.+ +. |..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~--l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA--VWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE--EEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCe--EEEEeCCC
Confidence 899999999887775 8999999999887777776666779999999999966666544 44 99999875
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=4.4e-11 Score=118.41 Aligned_cols=243 Identities=6% Similarity=-0.040 Sum_probs=154.0
Q ss_pred CeEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 396 PLLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 396 ~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
-.....|++++.. +++...++.|+.||..+++.. .+.. . ..+.+++++++|++++. . ++.|.+||
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~----------~~~~~i~~~~dG~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM-D----------APVSSVALRQSGGYVAT-I-GTKFCALN 79 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC-S----------SCEEEEEEBTTSSEEEE-E-TTEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC-C----------CceEEEEECCCCCEEEE-E-CCeEEEEE
Confidence 3457889986554 455556789999999887653 2321 1 56789999999995554 4 56799999
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
..+++.. .+...... .....+..++++|+|+++++.................+|.+........+. .+
T Consensus 80 ~~~g~~~-~~~~~~~~-----~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-----~~- 147 (297)
T 3g4e_A 80 WKEQSAV-VLATVDND-----KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-----DQ- 147 (297)
T ss_dssp TTTTEEE-EEEECCTT-----CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-----EE-
T ss_pred CCCCcEE-EEEecCCC-----CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-----ec-
Confidence 9876532 22211110 014568999999999976654311000000001223455554332222221 11
Q ss_pred CCceEEEEEcCCCCeEEE-EeCCCcEEEEEcc--cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCe
Q 040987 555 DAGISAVAFHPNRRAAVS-SSYGGDFKVWICN--DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETV 630 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~-~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~ 630 (762)
....+.++|+||++.|+. .+.++.|.+|++. ++...... ...........+..++++++|++.++.. ++.
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~------~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~ 221 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR------SVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR 221 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE------EEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE------EEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence 335678999999987654 4557889999973 44321100 1111112235678899999998777665 789
Q ss_pred EEEEeCCCCeEEEEeccccCceeEEEEe-CCCCEEEEEEcC
Q 040987 631 ITLWDPDRNVLVAVIGETLTPIMNMSFV-GSSEYLVATSWG 670 (762)
Q Consensus 631 i~iwd~~~~~~~~~l~~~~~~v~~~~~s-~dg~~l~s~~~d 670 (762)
|..||.++++.+..+..+...+++++|. ||++.|+.++..
T Consensus 222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 9999999999999888777789999999 888877766543
No 213
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=1.5e-08 Score=115.10 Aligned_cols=488 Identities=9% Similarity=-0.028 Sum_probs=279.2
Q ss_pred CeEEEEecCCcceeeeec------CcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecC-------CccceeE
Q 040987 53 GLCRTAEYPAVNSKMIRG------GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEG-------HKAPVTT 119 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~------h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~-------h~~~V~~ 119 (762)
+-|..++..+++...+.. ....|.+ +...++|++.+...++-|..||.++++....... ....|.+
T Consensus 137 ~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~-i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 215 (781)
T 3v9f_A 137 RGIEYLDIATGKFTHYNKSTVPALPSEQTWT-ATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRC 215 (781)
T ss_dssp SCEEEEETTTTEEEEESTTTCTTCSCCCEEE-EEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEE
T ss_pred CCeeEEECCCCeEEeeccCcccCCCccceEE-EEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeE
Confidence 446667776655444421 1234665 7777888776644455799999887764332111 1356899
Q ss_pred EEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeecccc
Q 040987 120 VIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRET 199 (762)
Q Consensus 120 v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (762)
+...++| .+. .++.+ -+.+||..+++..........
T Consensus 216 i~~d~~g-------~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~----------------------------------- 251 (781)
T 3v9f_A 216 IYKDTNG-------NIW-IGTSK-GLALFNANTETFTNFHNNPGN----------------------------------- 251 (781)
T ss_dssp EEECTTC-------CEE-EEETT-EEEEEETTTTEEEC------------------------------------------
T ss_pred EEEcCCC-------CEE-EEeCC-cHheECCCCCcEEEEEcCCCc-----------------------------------
Confidence 9888888 233 34444 688999877653321100000
Q ss_pred CcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhhee---e--
Q 040987 200 TKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVM---R-- 274 (762)
Q Consensus 200 ~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~---~-- 274 (762)
...-....|.++...++|.+.++...+.|.+++..+........ .
T Consensus 252 ------------------------------~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~ 301 (781)
T 3v9f_A 252 ------------------------------IHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFI 301 (781)
T ss_dssp ----------------------------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEE
T ss_pred ------------------------------cccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccc
Confidence 00001345788888888887777665788999988766431000 0
Q ss_pred -e---eeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 275 -K---ITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 275 -~---~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
. ...-....|.++...++|. |-.|+.++-|..++........ ...... ....-.
T Consensus 302 ~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~--------------------~~~~~~ 359 (781)
T 3v9f_A 302 REGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPT--------------------QMNESS 359 (781)
T ss_dssp CBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC------------------------CCCSSC
T ss_pred cCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCcc--------------------ccccCC
Confidence 0 0012345799999998886 4556667778889875442111 000000 000000
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC----CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP----RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
-....|.++...++|+ |..|+.++-|..+|..++...... .....|.++...++|.+.+ ++.++.+..++..++
T Consensus 360 l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK 437 (781)
T ss_dssp CSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC
T ss_pred CCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC
Confidence 1234688888887775 445665667889998766554321 1235688888887776544 667778999998876
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
+....... . .....|.++...+++++.+ ++.. -|..||..+++... +.... . .......|.++..
T Consensus 438 ~~~~~~~~-~-------~~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~-~~~~~-~---~~~~~~~i~~i~~ 502 (781)
T 3v9f_A 438 KFQIIELE-K-------NELLDVRVFYEDKNKKIWI-GTHA-GVFVIDLASKKVIH-HYDTS-N---SQLLENFVRSIAQ 502 (781)
T ss_dssp EEEECCST-T-------TCCCCEEEEEECTTSEEEE-EETT-EEEEEESSSSSCCE-EECTT-T---SSCSCSCEEEEEE
T ss_pred cEEEeccC-C-------CCCCeEEEEEECCCCCEEE-EECC-ceEEEeCCCCeEEe-cccCc-c---cccccceeEEEEE
Confidence 54332211 0 0125788888888876544 4554 58899987654322 11111 0 0011356889999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.++|++.+... .. -+..||..+.+.. .+.. ..+-....|.++...++|.+.+.. .+|.+..||..+
T Consensus 503 d~~g~lWigt~---------~~-Gl~~~~~~~~~~~-~~~~--~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~ 568 (781)
T 3v9f_A 503 DSEGRFWIGTF---------GG-GVGIYTPDMQLVR-KFNQ--YEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN 568 (781)
T ss_dssp CTTCCEEEEES---------SS-CEEEECTTCCEEE-EECT--TTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred cCCCCEEEEEc---------CC-CEEEEeCCCCeEE-EccC--CCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence 99998766553 23 3666776654321 1110 011114578999999888866544 466548888776
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecccc----C--ceeEEEEeCC
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETL----T--PIMNMSFVGS 660 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~----~--~v~~~~~s~d 660 (762)
++...... ........|.++...++|++.+++.+| |..++.++++... +.... . ...++...++
T Consensus 569 ~~~~~~~~--------~~gl~~~~i~~i~~d~~g~lW~~t~~G-l~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~ 638 (781)
T 3v9f_A 569 FDYQVFQR--------KEGLPNTHIRAISEDKNGNIWASTNTG-ISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHN 638 (781)
T ss_dssp CCCEEECG--------GGTCSCCCCCEEEECSSSCEEEECSSC-EEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTT
T ss_pred CcEEEccc--------cCCCCCceEEEEEECCCCCEEEEcCCc-eEEEECCCCceEE-ecccCCccccccccCceEECCC
Confidence 54322110 001123467889998999876655455 7778888765433 22111 1 1345667778
Q ss_pred CCEEEEEEcCCCCeEEEEECCC
Q 040987 661 SEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 661 g~~l~s~~~d~~~~v~vwd~~~ 682 (762)
|+ |..++.+| +..++-+.
T Consensus 639 G~-l~~g~~~G---l~~f~p~~ 656 (781)
T 3v9f_A 639 GL-IYFGSING---LCFFNPDI 656 (781)
T ss_dssp SC-EEEEETTE---EEEECSCC
T ss_pred CE-EEEECCCc---eEEEChhh
Confidence 76 55677777 77777653
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=1e-10 Score=115.74 Aligned_cols=237 Identities=11% Similarity=0.019 Sum_probs=154.3
Q ss_pred cccceeEEEEecCCCE-EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 352 HPSEVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
+..-..+..|++++.. +++...++.|+.||..+++... ......+.+++++++|+++++ . ++.|.+||..+++...
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 3344567899996554 4555567899999999877643 234567999999999995554 3 6789999998876544
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------ceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
....... .....+..++++|+|+++++.... ..-.+|.+........+... ....
T Consensus 88 ~~~~~~~------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~----------~~~p 151 (297)
T 3g4e_A 88 LATVDND------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ----------VDIS 151 (297)
T ss_dssp EEECCTT------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE----------ESBE
T ss_pred EEecCCC------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec----------cccc
Confidence 3322110 011457889999999976654321 22344444332222222111 2346
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec--CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG--TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDF 579 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i 579 (762)
..++|+||++.|..+.. ..+.|.+|++. ++.....-....+..+ ......++++++|++.++....+.|
T Consensus 152 ngi~~spdg~~lyv~~~--------~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDS--------LSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp EEEEECTTSCEEEEEEG--------GGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred cceEEcCCCCEEEEecC--------CCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCCEE
Confidence 78999999998766652 56789999984 4432111000111223 3567889999999888887778889
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEc-CCCcEEEEEc
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS-ADGSVLAVAA 627 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~~ 627 (762)
.+||..+++....+. .+...+++++|+ ||++.|.+++
T Consensus 223 ~~~d~~tG~~~~~i~-----------~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVK-----------LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEECTTTCCEEEEEE-----------CSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEEcCCCceEEEEEE-----------CCCCCceEEEEeCCCCCEEEEEc
Confidence 999998777655442 234678999998 8988776654
No 215
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.46 E-value=8e-12 Score=129.73 Aligned_cols=286 Identities=10% Similarity=0.039 Sum_probs=181.1
Q ss_pred cCCCEEEEEec-CCeEEEEecCCCceec--cCCCCCCeEEEEe-C-CCCCeEEEEe------------------cCCcEE
Q 040987 363 SDGAYLYSGGK-EGVLVVWQLDTGKKKF--LPRIGSPLLYFTE-S-PDPSLSSISC------------------ADNQVH 419 (762)
Q Consensus 363 ~~g~~l~s~~~-dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~d~~i~ 419 (762)
+||++++.... +..|.+.|+++.+... ..........+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888887665 4679999999998754 3333456788887 5 9999999884 245799
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-eEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-CIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
++|..+++...++.-. +....++++|||+++++.+.+. .....+..+......+.....
T Consensus 179 vID~~t~~v~~qI~Vg-----------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~--------- 238 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVS-----------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI--------- 238 (595)
T ss_dssp EEETTTTEEEEEEEES-----------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH---------
T ss_pred EEECCCCeEEEEEEeC-----------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeec---------
Confidence 9999999988887632 2235688999999999888653 111111111111111110000
Q ss_pred eeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC--CCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-
Q 040987 499 VVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT--QNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS- 574 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~--~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~- 574 (762)
....++.++|++...+ .|.+.|..+ ++. ...+.. .....++.++|||+++++++
T Consensus 239 --~~~~~~v~~Gk~~~i~-------------~V~VID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~ 296 (595)
T 1fwx_A 239 --AEIEKAIAAGDYQELN-------------GVKVVDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGK 296 (595)
T ss_dssp --HHHHHHHHHTCSEEET-------------TEEEEECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECT
T ss_pred --cceeEeccCCCeeEEC-------------cEEEEeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCC
Confidence 0000134556654432 489999998 444 334432 22344799999999877765
Q ss_pred CCCcEEEEEcccccccc--cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC----------Ce
Q 040987 575 YGGDFKVWICNDELQQK--DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR----------NV 640 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~----------~~ 640 (762)
.+.+|.++|+.+.+... .+. .. .+......-......++|+||| .+.+.. |+.|.+||+++ .+
T Consensus 297 ~s~~VsVid~~~~~~~~~~~l~-~~-~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~ 373 (595)
T 1fwx_A 297 LSPTVTVLDVTRFDAVFYENAD-PR-SAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP 373 (595)
T ss_dssp TSSBEEEEEGGGHHHHHHSCCC-GG-GGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred CCCeEEEEECcccccccccccC-cc-cceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence 56789999998653210 000 00 0000011234677899999999 665554 99999999987 56
Q ss_pred EEEEeccccCce-----eEEEEeCCCCEEEEEEcCCCCeE-----------EEEECCCCceeeEEEEee
Q 040987 641 LVAVIGETLTPI-----MNMSFVGSSEYLVATSWGSKPQL-----------SVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 641 ~~~~l~~~~~~v-----~~~~~s~dg~~l~s~~~d~~~~v-----------~vwd~~~~~~~~~~~~~~ 693 (762)
.+..+..|..+- ....++|||++|+++..-...++ .++|+..+++......+.
T Consensus 374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~ 442 (595)
T 1fwx_A 374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT 442 (595)
T ss_dssp EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred eEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence 777776665432 22356899999999865432235 899998888766666555
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=4.8e-10 Score=112.46 Aligned_cols=236 Identities=11% Similarity=-0.034 Sum_probs=150.5
Q ss_pred eEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 397 LLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 397 v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
...+.|+|++.. +++...++.|..||..+++... +.. . ..+.+++++++|+++++. .+ .|.+||.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-~----------~~v~~i~~~~dg~l~v~~-~~-gl~~~d~ 116 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-P----------FMGSALAKISDSKQLIAS-DD-GLFLRDT 116 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-S----------SCEEEEEEEETTEEEEEE-TT-EEEEEET
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-C----------CcceEEEEeCCCeEEEEE-CC-CEEEEEC
Confidence 456889997554 5555567899999998876432 221 1 467899999999877654 44 4999998
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCC
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRD 555 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~ 555 (762)
.+++.. .+...... .....+..++++|+|+++++.... ......+.|..++ +++. ..+. .+ .
T Consensus 117 ~~g~~~-~~~~~~~~-----~~~~~~~~i~~d~~G~l~v~~~~~---~~~~~~~~l~~~~--~g~~-~~~~-----~~-~ 178 (326)
T 2ghs_A 117 ATGVLT-LHAELESD-----LPGNRSNDGRMHPSGALWIGTMGR---KAETGAGSIYHVA--KGKV-TKLF-----AD-I 178 (326)
T ss_dssp TTCCEE-EEECSSTT-----CTTEEEEEEEECTTSCEEEEEEET---TCCTTCEEEEEEE--TTEE-EEEE-----EE-E
T ss_pred CCCcEE-EEeeCCCC-----CCCCCCCCEEECCCCCEEEEeCCC---cCCCCceEEEEEe--CCcE-EEee-----CC-C
Confidence 877532 22111100 113568999999999976654310 0000124566666 3322 2221 11 2
Q ss_pred CceEEEEEcCCCCeEEEE-eCCCcEEEEEcc--cc-cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCe
Q 040987 556 AGISAVAFHPNRRAAVSS-SYGGDFKVWICN--DE-LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETV 630 (762)
Q Consensus 556 ~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~ 630 (762)
.....++|+||++.++.+ +.++.|.+||+. ++ ...... ...........+..++++++|++.++.. ++.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~------~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~ 252 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE------VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA 252 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE------EEEECTTSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCce------EEEECCCCCCCCCeeEECCCCCEEEEEeCCCE
Confidence 356789999999877555 456789999986 44 221100 0011112234567899999998777665 789
Q ss_pred EEEEeCCCCeEEEEeccccCceeEEEEe-CCCCEEEEEEcCC
Q 040987 631 ITLWDPDRNVLVAVIGETLTPIMNMSFV-GSSEYLVATSWGS 671 (762)
Q Consensus 631 i~iwd~~~~~~~~~l~~~~~~v~~~~~s-~dg~~l~s~~~d~ 671 (762)
|.+||. +++.+..+..+...+.+++|+ +|++.|+.++..+
T Consensus 253 v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 253 VDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 999998 577777777676679999999 8888776665443
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=9.3e-11 Score=116.63 Aligned_cols=248 Identities=11% Similarity=-0.014 Sum_probs=157.8
Q ss_pred CCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceE
Q 040987 392 RIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 392 ~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
..........|+++|+ ++++...++.|..|+.. ++. ..+.... ..+..++++++|+++++...++.|
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~----------~~~~gl~~d~dG~l~v~~~~~~~v 109 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDAT----------AFTNGNAVDAQQRLVHCEHGRRAI 109 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEESC----------SCEEEEEECTTSCEEEEETTTTEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCC----------CccceeeECCCCCEEEEECCCCEE
Confidence 3344567899999998 45555567899999984 443 3333332 567899999999977666566789
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE----Eeeeccc----cCCCceeEEEEEEecCCCce
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST----VDIKLAE----EGIGSLVCLKFWVSGTQNKE 542 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~----~~~~~~~----~~~~~d~~i~iwd~~~~~~~ 542 (762)
..|+.. ++ ...+....... ....+..++++|+|++.++ +.....+ ......+.|..||..+++..
T Consensus 110 ~~~~~~-g~-~~~~~~~~~~~-----~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~ 182 (305)
T 3dr2_A 110 TRSDAD-GQ-AHLLVGRYAGK-----RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ 182 (305)
T ss_dssp EEECTT-SC-EEEEECEETTE-----ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred EEECCC-CC-EEEEEeccCCC-----ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence 999975 43 22222111110 0234667999999998886 2210000 00001357777877666543
Q ss_pred eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEE
Q 040987 543 FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF 616 (762)
Q Consensus 543 ~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 616 (762)
... . ......++|+||++.|+.+... +.|++|++..+. ..... .. ..........+++
T Consensus 183 ~~~-------~-~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~-----~~--~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 183 RMA-------D-LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR-----HF--ASVPDGLPDGFCV 246 (305)
T ss_dssp EEE-------E-ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE-----EE--ECCSSSCCCSEEE
T ss_pred EEe-------c-CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe-----EE--EECCCCCCCeEEE
Confidence 322 1 3356789999999988777665 689999987544 11100 00 0112344567899
Q ss_pred cCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 617 SADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 617 s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
+++|++.+ +..+.|.+|+.+ ++.+..+..+. .+.+++|+++++.|+.++.++ +..+++
T Consensus 247 d~~G~lwv-~~~~gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~---l~~~~~ 304 (305)
T 3dr2_A 247 DRGGWLWS-SSGTGVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC---LWMLPL 304 (305)
T ss_dssp CTTSCEEE-CCSSEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEEEETTE---EEEEEC
T ss_pred CCCCCEEE-ecCCcEEEECCC-CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe---EEEEEC
Confidence 99999544 444459999984 77777776554 588999999999999888876 555443
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.41 E-value=1.6e-10 Score=114.92 Aligned_cols=248 Identities=8% Similarity=-0.086 Sum_probs=157.8
Q ss_pred eeeeccccceeEEEEecCCC-EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGA-YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..+.........+.|+++|+ .+++...++.|..|+. +++...+......+..++++++|+++++...++.|.+|+..
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 44555556678899999998 4556667789999998 45554444456678999999999977665556789999986
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE----eec-------------CceEEEEEcCCCCceeeEEeec
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL----RAE-------------NYCIHFYSLLDDRGISEVQVCE 488 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~ 488 (762)
++.......... .....+..++++++|+++++ +.. .+.|+.+|..+++..... .
T Consensus 116 g~~~~~~~~~~~------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~- 186 (305)
T 3dr2_A 116 GQAHLLVGRYAG------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D- 186 (305)
T ss_dssp SCEEEEECEETT------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E-
T ss_pred CCEEEEEeccCC------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c-
Confidence 553322211110 00134678999999998876 331 356888887666543322 1
Q ss_pred ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC
Q 040987 489 RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~ 568 (762)
......++|+||++.|+++..... ....+.|.+|++.... ....... .... ......++++++|+
T Consensus 187 ---------~~~p~gl~~spdg~~lyv~~~~~~---~~~~~~i~~~~~~~~~-l~~~~~~-~~~~-~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 187 ---------LDHPNGLAFSPDEQTLYVSQTPEQ---GHGSVEITAFAWRDGA-LHDRRHF-ASVP-DGLPDGFCVDRGGW 251 (305)
T ss_dssp ---------ESSEEEEEECTTSSEEEEEECCC------CCCEEEEEEEETTE-EEEEEEE-ECCS-SSCCCSEEECTTSC
T ss_pred ---------CCCCcceEEcCCCCEEEEEecCCc---CCCCCEEEEEEecCCC-ccCCeEE-EECC-CCCCCeEEECCCCC
Confidence 233678999999998887762100 0002689999998654 2111111 1112 33456789999999
Q ss_pred eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 569 AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 569 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
+.++ +.+ .|.+|+.. ++....+. . ...+.+++|+|+++.|.+++.+.++.++
T Consensus 252 lwv~-~~~-gv~~~~~~-g~~~~~~~-----------~-~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 252 LWSS-SGT-GVCVFDSD-GQLLGHIP-----------T-PGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp EEEC-CSS-EEEEECTT-SCEEEEEE-----------C-SSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred EEEe-cCC-cEEEECCC-CCEEEEEE-----------C-CCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 5554 444 49999984 33333221 1 2257899999999988888755555444
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.40 E-value=1.5e-11 Score=124.51 Aligned_cols=268 Identities=9% Similarity=-0.038 Sum_probs=170.3
Q ss_pred ccccCCceeecCCCEEEEEe---CCEEEEEEcccceEEeee-------cCCccceeEEEEeCCCCcccceeeeEEeeec-
Q 040987 73 SYVSSPPAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSL-------EGHKAPVTTVIVVPASTPATKILSYCWTASL- 141 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~---~~~i~iwd~~~~~~~~~l-------~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~- 141 (762)
..... +++++||+++++.. ++.+.||.+.+++.. .+ .+|-..+.+++|++++ .++++-..
T Consensus 17 ~~p~~-va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g-------~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGN-ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNG-------IVWMLDNGN 87 (343)
T ss_dssp SCEEE-EEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSS-------EEEEEECHH
T ss_pred CCcce-EEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCC-------cEEEEcCCC
Confidence 45555 99999999998864 243556665566543 22 2456789999999999 44443332
Q ss_pred ----CCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 142 ----DGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 142 ----d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
+..|.+||+.+++.++.+.....
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~----------------------------------------------------- 114 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPP----------------------------------------------------- 114 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTT-----------------------------------------------------
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChh-----------------------------------------------------
Confidence 57899999999887766542110
Q ss_pred EEecCCccccceeeeccCCCceEEEECCCCCEE-EEE----eCCeEEEEEccCchhhhheeeeeeeccCcCeE-EEEEcC
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-GIR----KQRKLLIWKVPDVEAERVVMRKITLHHTKKLT-VLAFHP 291 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp 291 (762)
...+...+..++++|++..+ ++. .++.|.+||+.+++.. +....|..... ...+.+
T Consensus 115 -------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~-----r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 115 -------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA-----RVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp -------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-----EECTTCTTTSCCSCCCEE
T ss_pred -------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-----EEecCCCcccccccceeE
Confidence 00123456788999865554 333 4689999999877643 33333321110 134555
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG 371 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 371 (762)
+|..+.+.+.+|.+..|.. .+..++|+|||+.|+.+
T Consensus 177 ~g~~~~~~~~~g~~~~~~~--------------------------------------------~~~gia~s~dg~~ly~~ 212 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHL--------------------------------------------GVNGIVLDAENEWLYLS 212 (343)
T ss_dssp TTEECBEECTTSCEECCCC--------------------------------------------CEEEEEECTTSCEEEEE
T ss_pred CCEEEEeccCCCceeceec--------------------------------------------ccceeEeccCCCEEEEE
Confidence 7777777777777665532 25679999999999888
Q ss_pred ecCC-eEEEEecCC---Cce---e-----ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 372 GKEG-VLVVWQLDT---GKK---K-----FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 372 ~~dg-~i~~wd~~~---~~~---~-----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
...+ .++.++... +.. . ...........++++++|.++++...++.|.+||..+++.........
T Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~--- 289 (343)
T 2qe8_A 213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK--- 289 (343)
T ss_dssp ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG---
T ss_pred eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc---
Confidence 7665 555555321 110 0 011122345568999999988888888999999995566433332211
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEE
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFY 473 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 473 (762)
-..+.+++|.++++++++.+..+.+.+|
T Consensus 290 ------~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 ------LSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ------GSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ------eecCCeeEECCCCcEEEEeCcccccccc
Confidence 1467899999998887777655544433
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.40 E-value=6.7e-12 Score=125.89 Aligned_cols=275 Identities=7% Similarity=-0.131 Sum_probs=166.7
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
+|.++|..+++.+.....+..- .+.++||+++++++. .++.|.+||+.+++.+.++....... .. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-~~--~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FS--V 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-CC--B
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-cc--c
Confidence 8899999999886433333323 799999999999886 36789999999999999886431000 00 0
Q ss_pred cCceeeEEEeCCCCEEEEeec--CceEEE--EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 446 KGLCRDIAFNHDGGLVALRAE--NYCIHF--YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
......++++|||++++++.. +..+.+ +|..+ +.++.... ++.+.|+++....+..
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--------------~~~~~p~g~~~~~~~~--- 182 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--------------CFHIHPGAAATHYLGS--- 182 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--------------CCCCEEEETTEEECCC---
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--------------ceEEccCCCeEEEEEc---
Confidence 013467999999999998864 467888 88876 33332210 0112344432222211
Q ss_pred ccCCCceeEEEEEEecC-----CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCC
Q 040987 522 EEGIGSLVCLKFWVSGT-----QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
.|+.+.+.++.+ ++...........+ ..+. . ++++..++..+. +.+.+.|..+.......
T Consensus 183 -----~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg--~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~--- 247 (368)
T 1mda_H 183 -----CPASLAASDLAAAPAAAGIVGAQCTGAQNCS--SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA--- 247 (368)
T ss_dssp -----CTTSCEEEECCSSCCCCEECCCCSCTTSCBC--SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC---
T ss_pred -----CCCCEEEEECccccccCCeEEEEeeeeeeCC--CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE---
Confidence 445555556654 21110000000011 2222 3 666666666666 89999998653211100
Q ss_pred ceeeee----ecccCCCCeEEEEEcCCCcEEEEEc--C--------CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCC
Q 040987 597 GWSCHA----VGSYKKKAMTAAAFSADGSVLAVAA--E--------TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 597 ~~~~~~----~~~~~~~~i~~~~~s~dg~~la~~~--d--------~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~ 662 (762)
.|.... ...........++++|||+.+.++. + +.+.++|+.+++.+..+.... ....++|+|||+
T Consensus 248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~ 326 (368)
T 1mda_H 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGA 326 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSS
T ss_pred EEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCC
Confidence 010000 0000011222268999999887653 3 367799999999999886543 578999999998
Q ss_pred EE-EEEE-cCCCCeEEEEECCCCceeeEEEEe
Q 040987 663 YL-VATS-WGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 663 ~l-~s~~-~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
++ ++.. .++. |.++|+.+++.+..+...
T Consensus 327 ~l~va~~~~~~~--VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 327 SDNYANSAGTEV--LDIYDAASDQDQSSVELD 356 (368)
T ss_dssp CEEEEEETTTTE--EEEEESSSCEEEEECCCC
T ss_pred EEEEEccCCCCe--EEEEECCCCcEEEEEECC
Confidence 54 5555 3666 999999999988766543
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.39 E-value=2.5e-11 Score=121.67 Aligned_cols=268 Identities=8% Similarity=-0.083 Sum_probs=162.2
Q ss_pred eEEEEecCCcceeee-ecCcccccCCceeecCCCEEEEEe-----------CCEEEEEEcccceEEeeecCC-------c
Q 040987 54 LCRTAEYPAVNSKMI-RGGRSYVSSPPAFSNDVKRLLVCT-----------SNTVSIFSTSTGLQISSLEGH-------K 114 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~-~~h~~~v~~~~~~s~dg~~la~~~-----------~~~i~iwd~~~~~~~~~l~~h-------~ 114 (762)
.|.++|..+.+.+.. .....+ . ++|||||++|.++. ++.|.+||+.+++.+.++.-+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~-i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--L-AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--E-EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--c-eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 888999998776643 333344 5 99999999999885 489999999999999998633 1
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeec--CCeEEE--EeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASL--DGTIKY--WDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~--d~~i~v--Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
.....++|+||| ++|+.+.. +..|.+ +|..+ ++++.....
T Consensus 124 ~~P~~ia~SpDG-------k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-------------------------- 167 (368)
T 1mda_H 124 PRVHIIGNCASS-------ACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-------------------------- 167 (368)
T ss_dssp CCTTSEEECTTS-------SCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--------------------------
T ss_pred CCcceEEEcCCC-------CEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--------------------------
Confidence 346789999999 56666653 467888 99876 343321100
Q ss_pred EEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCC--EEEEEeCCeEEEEEccC---
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGK--YFGIRKQRKLLIWKVPD--- 265 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~--~la~~~~~~i~iwd~~~--- 265 (762)
+.+.|+|+ +++.+.|+.+.+.++.+
T Consensus 168 --------------------------------------------------~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 168 --------------------------------------------------FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp --------------------------------------------------CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred --------------------------------------------------eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 00111221 11222334444444443
Q ss_pred --chhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCce-ee-cccccccccccccccCCCCcccCC
Q 040987 266 --VEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT-FA-TNDNKMNLNLMNNEEERPGVRDND 341 (762)
Q Consensus 266 --~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 341 (762)
++...... ....-...+. + ++++..++..+. +.|.+.|..+... +. ...-. .
T Consensus 198 ~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~------------------~ 253 (368)
T 1mda_H 198 AAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN------------------E 253 (368)
T ss_dssp CCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS------------------C
T ss_pred cCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec------------------c
Confidence 22110000 0011112233 3 566666666666 8999999865321 10 00000 0
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEec---------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK---------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
.......+ .......++++||+++++.+.. ++.+.++|+.+.+.......+.....++++|||++++++
T Consensus 254 ~~~~~~~~--~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 254 SGRKADNF--RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp THHHHTTE--EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEE
T ss_pred cccccccc--ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEE
Confidence 00000001 1112223689999998887543 235669999999887655555578899999999865544
Q ss_pred e--cCCcEEEEEcCCceEEEEEccCC
Q 040987 413 C--ADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 413 ~--~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
. .++.|.++|+.+++.+.++....
T Consensus 332 ~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECCCCS
T ss_pred ccCCCCeEEEEECCCCcEEEEEECCC
Confidence 4 48999999999999999987654
No 222
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=1.2e-10 Score=120.23 Aligned_cols=261 Identities=8% Similarity=-0.095 Sum_probs=161.4
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC--cEEEEEcCCceEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN--QVHLLKMPSMEIIRS 431 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~d~~~~~~~~~ 431 (762)
.....++|+++++.+++...++.|++||.+++....+........ ++|+++++.|+++..++ .|.+++...+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 357789999999877776667899999999887754433333334 99999999999887765 788898876544333
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee-cccccCCCCcceeEEEEEEecCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC-ERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
+..... .....+.+++++|++..|+++..++.|+.||..++.. ..+... ..+. .. ..+...++|+|++
T Consensus 210 ~g~~~~------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~---~~-~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 210 IGQLGS------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGS---LG-TNPGPYLIYYFVD 278 (409)
T ss_dssp EEECCT------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSC---CC-CSSCCEEEEETTT
T ss_pred eeeccc------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCC---CC-CCccccEEEeCCC
Confidence 310000 0014568899999555566677788999999987652 222110 1100 00 1111289999965
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe-ecCC--------CCCceEEEEEcCCCCeEEEEe-CCCcEE
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV-YEPH--------RDAGISAVAFHPNRRAAVSSS-YGGDFK 580 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~h--------~~~~v~~~~~spd~~~l~~~~-~dg~i~ 580 (762)
..|..+.. ..+.|+.|+.... ...+.... ..+. .-.....++++|+|+++++-+ .++.|+
T Consensus 279 g~lyv~d~--------~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 279 SNFYMSDQ--------NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp TEEEEEET--------TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred CEEEEEeC--------CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 55555442 6678999987643 22221100 0000 013478999999999877777 788999
Q ss_pred EEEcccccccccccCC---ceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 581 VWICNDELQQKDLQSS---GWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
.|++.++......... .+..-......-.....++++++|.++++-. +++|+.+++
T Consensus 349 ~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 349 KLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9997766543222100 0000000001124678999999987776665 788888765
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=4.8e-11 Score=133.16 Aligned_cols=250 Identities=10% Similarity=0.014 Sum_probs=162.4
Q ss_pred CCCeEEEEeCCCCCeEEEEec-----CCcEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 394 GSPLLYFTESPDPSLSSISCA-----DNQVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
...+..++|||||++|+.+.. ...|+++|+.+++.+.. +.+ .....++|+ |++.|+.++.+
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~------------~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD------------VKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE------------EESCCCEEE-TTTEEEEEESS
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC------------ceeccEEEe-CCCEEEEEEec
Confidence 346788899999999986543 24699999999886553 211 113578999 99999998877
Q ss_pred c-------------eEEEEEcCCCCceeeEEeeccc-ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 468 Y-------------CIHFYSLLDDRGISEVQVCERN-HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 468 g-------------~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
. .|++|++.++.....+...... + ......+.++|||++|+..... ......|++
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~------~~~~~~~~~SpDg~~l~~~~~~-----~~~~~~i~~ 263 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ------HHRYVGATVTEDDRFLLISAAN-----STSGNRLYV 263 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG------CCSEEEEEECTTSCEEEEEEES-----SSSCCEEEE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCC------CeEEEEEEEcCCCCEEEEEEcc-----CCCCcEEEE
Confidence 4 4999999876543333222221 1 2346788999999998776521 012358999
Q ss_pred EEecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-C---CcEEEEEcccccccccccCCceeeeeecccCC
Q 040987 534 WVSGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-G---GDFKVWICNDELQQKDLQSSGWSCHAVGSYKK 608 (762)
Q Consensus 534 wd~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (762)
+|+.++.. ...+ ..+ ....... ++++|..|+..+. + +.|..+|+.++... .|... ..+.
T Consensus 264 ~d~~~~~~~~~~l-----~~~-~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~------~~~~l---~~~~ 327 (693)
T 3iuj_A 264 KDLSQENAPLLTV-----QGD-LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA------HWRDL---IPER 327 (693)
T ss_dssp EETTSTTCCCEEE-----ECS-SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG------GCEEE---ECCC
T ss_pred EECCCCCCceEEE-----eCC-CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------ccEEE---ecCC
Confidence 99987642 2333 233 4444444 6677666655543 3 56888998876431 11111 1233
Q ss_pred CCeEEEEEcCCCcEEEEEc--CC--eEEEEeCCCCeEEEEec-cccCceeEEEEeCCCCEEEEEEcC--CCCeEEEEECC
Q 040987 609 KAMTAAAFSADGSVLAVAA--ET--VITLWDPDRNVLVAVIG-ETLTPIMNMSFVGSSEYLVATSWG--SKPQLSVWNMS 681 (762)
Q Consensus 609 ~~i~~~~~s~dg~~la~~~--d~--~i~iwd~~~~~~~~~l~-~~~~~v~~~~~s~dg~~l~s~~~d--~~~~v~vwd~~ 681 (762)
..+. .|+++++.|+... ++ .|++|+++.+.. ..+. .....+..+.+++|++.|+....+ ..+.|+.||+.
T Consensus 328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 3444 8999999888775 54 789999986544 3443 234557788888888877766544 22349999998
Q ss_pred CCcee
Q 040987 682 KLSIS 686 (762)
Q Consensus 682 ~~~~~ 686 (762)
+++..
T Consensus 405 ~g~~~ 409 (693)
T 3iuj_A 405 SGAIS 409 (693)
T ss_dssp TCCEE
T ss_pred CCeEE
Confidence 88754
No 224
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=1.2e-10 Score=120.46 Aligned_cols=253 Identities=8% Similarity=0.010 Sum_probs=156.6
Q ss_pred cccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC--eEEEEeC
Q 040987 74 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG--TIKYWDF 150 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~--~i~vWd~ 150 (762)
.... ++|+++|+++++.. ++.|++||.++++........ .... ++|+|++ ..|+.+..++ .|.+||.
T Consensus 132 ~P~~-la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g-------~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 132 YMWG-IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDK-------QRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CEEE-EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTS-------SEEEEEBSSTTCEEEEEEG
T ss_pred CceE-EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCC-------CcEEEEecCCCceEEEEEc
Confidence 3444 89999999777666 489999999888776655543 3334 9999999 5666776655 7888887
Q ss_pred CCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccccee
Q 040987 151 SVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGV 230 (762)
Q Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 230 (762)
.++.....+.. .
T Consensus 202 ~~~~~~~~~g~--------------------------------------------------------------------~ 213 (409)
T 3hrp_A 202 ASGWAPTRIGQ--------------------------------------------------------------------L 213 (409)
T ss_dssp GGTTCEEEEEE--------------------------------------------------------------------C
T ss_pred CCCceeEEeee--------------------------------------------------------------------c
Confidence 66543322210 0
Q ss_pred eeccCCCceEEEECC-CCCEEEEEeCCeEEEEEccCchhhhheeeee-eeccCcCe--EEEEEcCC-CcEEEEeecCCeE
Q 040987 231 TLAEMKEPQVITISS-SGKYFGIRKQRKLLIWKVPDVEAERVVMRKI-TLHHTKKL--TVLAFHPT-QRIVAAGDVTGRI 305 (762)
Q Consensus 231 ~~~~~~~v~~~~~sp-dg~~la~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~v--~~~~~sp~-~~~l~~~~~dg~v 305 (762)
.......+.+++++| +|.++++..++.|+.||..++... ..... ..++...- ..++|+|+ +.++++-..++.|
T Consensus 214 ~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~--~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 214 GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT--LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV 291 (409)
T ss_dssp CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE--EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE--EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence 001234567889999 455555445788999999876532 11000 11222222 39999995 6555666668899
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDT 384 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~ 384 (762)
+.|+..+........... .. ..++ ......-.....++++++|+++++-. .++.|+.|++.+
T Consensus 292 ~~~~~~g~~~~~~g~~~~-----------~g---~~dg---~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 292 YKITPDGECEWFCGSATQ-----------KT---VQDG---LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp EEECTTCCEEEEEECTTC-----------CS---CBCE---EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred EEEecCCCEEEEEeCCCC-----------CC---cCCC---cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 999876542111000000 00 0000 00001123467899999999777766 788999999877
Q ss_pred CceeccCCC---------------CCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 385 GKKKFLPRI---------------GSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 385 ~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+....+... -.....++++++|.++++-..++.|+.+++
T Consensus 355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 776433322 135788999999877777667778887765
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=3.5e-11 Score=132.73 Aligned_cols=312 Identities=9% Similarity=0.025 Sum_probs=198.9
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC------------eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP------------LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~------------v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+..++.++.++.|+.+|.++|+.+........ ...+++ ++..+++++.++.+..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 44677777789999999999988543222211 011222 4678888889999999999999999888
Q ss_pred ccC-CCCCCCCCcccCcee-eEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeecccc-cCC---------
Q 040987 433 SGI-KLPCPLPEEYKGLCR-DIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNH-QPG--------- 494 (762)
Q Consensus 433 ~~~-~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~--------- 494 (762)
... .... ...+. ...+. +..+++++. ++.|+.||..+++.+.++....... .+.
T Consensus 155 ~~~~~~~~------~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~ 226 (677)
T 1kb0_A 155 NTFEGQKG------SLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA 226 (677)
T ss_dssp ETTTTCCS------SCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred cCCcCcCc------CcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc
Confidence 754 1100 00111 11122 345555543 6899999999999888775432210 000
Q ss_pred ------C------CcceeEEEEEEecCCCeEEEEeeeccc-----------cCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 495 ------D------DVTVVVTLVALSQDGSLMSTVDIKLAE-----------EGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 495 ------~------~~~~~v~~~~~sp~g~~l~~~~~~~~~-----------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
. ........++++|++..+..+..+... +.. ..+.|..+|..+++..+.++. .
T Consensus 227 ~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~-~~~sv~AlD~~TG~~~W~~~~---~ 302 (677)
T 1kb0_A 227 RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL-YLASIVALDPDTGKYKWHYQE---T 302 (677)
T ss_dssp TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT-TTTEEEEECTTTCCEEEEEES---S
T ss_pred ccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe-eeEEEEEEECCCCCEEEEEec---C
Confidence 0 001112357889999888887621000 000 012699999999998887753 2
Q ss_pred CCC------CCceEEEEEcCCC---CeEEEEeCCCcEEEEEccccccccccc--CCceeeeee-----------------
Q 040987 552 PHR------DAGISAVAFHPNR---RAAVSSSYGGDFKVWICNDELQQKDLQ--SSGWSCHAV----------------- 603 (762)
Q Consensus 552 ~h~------~~~v~~~~~spd~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~----------------- 603 (762)
+|. ......+....+| +.++.++.+|.++++|..+++.+...+ ...|.....
T Consensus 303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 382 (677)
T 1kb0_A 303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKP 382 (677)
T ss_dssp TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSC
T ss_pred CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCc
Confidence 220 0112223333477 688899999999999999998765442 111211000
Q ss_pred ---cccC--CCCeEEEEEcCCCcEEEEEc-C-------------------------------------------CeEEEE
Q 040987 604 ---GSYK--KKAMTAAAFSADGSVLAVAA-E-------------------------------------------TVITLW 634 (762)
Q Consensus 604 ---~~~~--~~~i~~~~~s~dg~~la~~~-d-------------------------------------------~~i~iw 634 (762)
.... ...-..++|+|++.++++.. + +.|..|
T Consensus 383 ~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~ 462 (677)
T 1kb0_A 383 QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW 462 (677)
T ss_dssp EECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE
T ss_pred cEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEE
Confidence 0000 01112678999988887753 2 789999
Q ss_pred eCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 635 DPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 635 d~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
|+.+++.+-... +..++....++.++.+++.++.|+. +++||..+|+++|++....
T Consensus 463 D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~--l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 463 DPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGR--LVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp ETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSS
T ss_pred eCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCc--EEEEECCCCceeeeeeCCC
Confidence 999999888876 4445666677888889999988987 9999999999999998665
No 226
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=3.6e-11 Score=120.66 Aligned_cols=185 Identities=12% Similarity=-0.008 Sum_probs=135.5
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhh------eeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEec
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERV------VMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~ 310 (762)
.++.+++++...+++++....+.+|++........ .. .....+.. |+.++| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 68999999999999988888999999876551100 11 12234566 999999 99999999 8899999998
Q ss_pred cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc
Q 040987 311 FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL 390 (762)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~ 390 (762)
...... .....|...+.++.+.+. .++++..||.|.+||+.++....
T Consensus 114 ~sl~~~------------------------------~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 114 EELSEF------------------------------RTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp SSTTCE------------------------------EEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-
T ss_pred hhhhcc------------------------------CccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-
Confidence 655321 234456667778777654 38888999999999999887653
Q ss_pred CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE--EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 391 PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI--IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 391 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
+...|.+++|||+| ++.+..||.+++|+...++. ..++..... ......+...|.++.|.+++.++++-
T Consensus 161 --~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~-~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 161 --LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp --EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHH-HHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred --ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcc-cccccCCCeeEEEEEEecCCeEEEEE
Confidence 45689999999999 67788999999999987775 555521100 00000123789999999998887753
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.35 E-value=1.2e-10 Score=128.47 Aligned_cols=329 Identities=9% Similarity=0.006 Sum_probs=198.9
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
+..|++++.++.|..+|..+++.+-......... .......+ .....+++ ++..|+.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~------------------~~~~~~~~-~~~~~~a~--~~~~v~v~~ 135 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRS------------------TGFKGCCD-VVNRGVAL--WKGKVYVGA 135 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGG------------------GGGGSSSC-SCCCCCEE--ETTEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcc------------------cccccccc-CCCCCceE--ECCEEEEEc
Confidence 4456677778899999998887654221110000 00000000 00012222 356788888
Q ss_pred cCCeEEEEecCCCceeccCCCC------CCeEE-EEeCCCCCeEEEEec------CCcEEEEEcCCceEEEEEccCCCCC
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIG------SPLLY-FTESPDPSLSSISCA------DNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~------~~v~~-~~~s~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
.|+.|..+|.++|+.+...... ..+.. ... .+..+++++. ++.|+.+|..+|+.+..+.......
T Consensus 136 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~ 213 (677)
T 1kb0_A 136 WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP 213 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc
Confidence 8999999999999985322221 11111 111 2345555543 6899999999999998876533211
Q ss_pred CCCC----------------------cccCceeeEEEeCCCCEEEEeecCc-------------------eEEEEEcCCC
Q 040987 440 PLPE----------------------EYKGLCRDIAFNHDGGLVALRAENY-------------------CIHFYSLLDD 478 (762)
Q Consensus 440 ~~~~----------------------~~~~~v~~~~~s~~~~~l~~~~~dg-------------------~i~i~d~~~~ 478 (762)
..+. ........++++|++..+++++.++ .|..+|..++
T Consensus 214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG 293 (677)
T 1kb0_A 214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG 293 (677)
T ss_dssp TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred cccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC
Confidence 0000 0001124678999999998887664 5999999999
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCC---CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe------
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDG---SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV------ 549 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------ 549 (762)
+....++......-.... .....-+....+| +.++.++ .++.++++|..+++.+.......
T Consensus 294 ~~~W~~~~~~~d~wd~~~-~~~p~l~~~~~dG~~~~~l~~~~---------~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 294 KYKWHYQETPGDNWDYTS-TQPMILADIKIAGKPRKVILHAP---------KNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp CEEEEEESSTTCCSCCCC-CSCCEEEEEEETTEEEEEEEECC---------TTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred CEEEEEecCCCccccccc-CCCcEEEecccCCcEeeEEEEEC---------CCCEEEEEECCCCCEeccccccccCcccc
Confidence 988776643221000000 1122223444578 6778877 88999999999998876654210
Q ss_pred ecCCCCCce------------------------EEEEEcCCCCeEEEEeCC-----------------------------
Q 040987 550 YEPHRDAGI------------------------SAVAFHPNRRAAVSSSYG----------------------------- 576 (762)
Q Consensus 550 ~~~h~~~~v------------------------~~~~~spd~~~l~~~~~d----------------------------- 576 (762)
.... ...+ ..++++|++.++++...+
T Consensus 364 ~d~~-g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 364 YDKH-GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp ECTT-SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred cCCC-CceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 0000 0000 257889988888775432
Q ss_pred --------------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 577 --------------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 577 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
|.|..||+.+++.+-..+ +...+....++.++.++++++ |+.+++||.++|+.
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~------------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE------------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEE------------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecC------------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 678999998887654331 122344455667888888888 99999999999999
Q ss_pred EEEeccccC-ceeEEEEeCCCCEEEEE
Q 040987 642 VAVIGETLT-PIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 642 ~~~l~~~~~-~v~~~~~s~dg~~l~s~ 667 (762)
+..+....+ ...-+.|..+|+.++..
T Consensus 511 lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 511 LWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 988864432 23456677888765554
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.35 E-value=3.5e-10 Score=114.48 Aligned_cols=275 Identities=9% Similarity=-0.004 Sum_probs=166.7
Q ss_pred cceeEEEEecCCCEEEEEec--CCeEEEEecCCCceeccC-------CCCCCeEEEEeCCCCCeEEEEec-----CCcEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGK--EGVLVVWQLDTGKKKFLP-------RIGSPLLYFTESPDPSLSSISCA-----DNQVH 419 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~--dg~i~~wd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~ 419 (762)
..+..++++++|+.+++... ++.+++|.+.+++...++ .+-..+..++++++++++++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 67899999999998888642 342455555455544222 12347899999999886665433 57899
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEE-EEee---cCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV-ALRA---ENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+||+.+++.+..+....... .....+..+++++++..+ ++.. .++.|.+||+.+++....+ ..|....
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~----~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~----~~~~~~~ 168 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPIT----LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL----QGYPGIA 168 (343)
T ss_dssp EEETTTTEEEEEEECCTTTS----CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC----TTCTTTS
T ss_pred EEECCCCeEEEEEECChhhc----ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe----cCCCccc
Confidence 99999998877765322100 111356889999865444 4444 5789999999877543322 1110000
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
.. ...+.++|..+.+.+ .++.++.| ...+..++|+|||+.|+++..
T Consensus 169 --~~---~~~~~~~g~~~~~~~---------~~g~~~~~--------------------~~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 169 --PE---DIDLVIDGVPVQIGQ---------PDGTVIRP--------------------HLGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp --CC---SCCCEETTEECBEEC---------TTSCEECC--------------------CCCEEEEEECTTSCEEEEEES
T ss_pred --cc---ccceeECCEEEEecc---------CCCceece--------------------ecccceeEeccCCCEEEEEeC
Confidence 00 034455666665554 34444322 124568999999998888877
Q ss_pred CCcEEEEEcccccccc-ccc-CCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCc
Q 040987 576 GGDFKVWICNDELQQK-DLQ-SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTP 651 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~-~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~ 651 (762)
++. ++|.+....... ... ...+.. ....++......++++++|+++++.. ++.|.+||.++++....... +...
T Consensus 215 ~~~-~l~~~~~~~~~~~~~~~~~~~~~-~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~ 292 (343)
T 2qe8_A 215 HST-SMYRIKSADLSNLQLTDAELGSK-IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW 292 (343)
T ss_dssp SCS-EEEEEEHHHHTCTTCCHHHHHTT-CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCC-eEEEEEHHHhcCCCCChhhhhcc-eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence 663 455543221100 000 000000 00001223456799999998888876 89999999966765433332 2345
Q ss_pred eeEEEEeCCCCEEEEEEcCCC
Q 040987 652 IMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d~~ 672 (762)
..+++|.++|+++++.+..+.
T Consensus 293 p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 293 TDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp EEEEEECTTSCEEEEECCGGG
T ss_pred CCeeEECCCCcEEEEeCcccc
Confidence 889999999988888765543
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.35 E-value=1.3e-10 Score=129.71 Aligned_cols=196 Identities=11% Similarity=0.044 Sum_probs=126.8
Q ss_pred EEEECCCCCEEEEE-eC-------------CeEEEEEccCchhhhheeeeeeec-cCcCeEEEEEcCCCcEEEEeec---
Q 040987 240 VITISSSGKYFGIR-KQ-------------RKLLIWKVPDVEAERVVMRKITLH-HTKKLTVLAFHPTQRIVAAGDV--- 301 (762)
Q Consensus 240 ~~~~spdg~~la~~-~~-------------~~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~--- 301 (762)
.++|+ ||+.|+.+ .+ ..|++|++.+.......+ ..... |...+..+.|+|||++|+....
T Consensus 179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLV-FGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEE-ESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEE-EecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 45788 88877744 33 349999998876431111 11122 3445788999999998875432
Q ss_pred -CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-C---Ce
Q 040987 302 -TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-E---GV 376 (762)
Q Consensus 302 -dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-d---g~ 376 (762)
+..|+++|+.++.. ....+..+....... |+++|..|+..+. + +.
T Consensus 257 ~~~~i~~~d~~~~~~-----------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~ 306 (693)
T 3iuj_A 257 SGNRLYVKDLSQENA-----------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRR 306 (693)
T ss_dssp SCCEEEEEETTSTTC-----------------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCE
T ss_pred CCcEEEEEECCCCCC-----------------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCE
Confidence 35899999865421 123444555555554 6667766665443 2 67
Q ss_pred EEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 377 LVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 377 i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
|..+|+.++.. ..+..+...+. .|+++++.|+....++ .|++|++..+ ....+.... .+.+.
T Consensus 307 l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~---------~~~~~ 374 (693)
T 3iuj_A 307 LVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG---------LGSVS 374 (693)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS---------SSEEE
T ss_pred EEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC---------CceEE
Confidence 99999988764 34444555454 8899999888776544 6889998754 344443211 14667
Q ss_pred eEEEeCCCCEEEEeecC----ceEEEEEcCCCC
Q 040987 451 DIAFNHDGGLVALRAEN----YCIHFYSLLDDR 479 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~ 479 (762)
.+.++++++.++....+ +.++.||+.+++
T Consensus 375 ~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 375 GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 77788888887776655 789999998765
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.34 E-value=1.6e-09 Score=108.50 Aligned_cols=249 Identities=8% Similarity=0.034 Sum_probs=153.7
Q ss_pred CCCCeEEEEe-cCCcEEEEEcCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------ceEEE
Q 040987 404 PDPSLSSISC-ADNQVHLLKMPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIHF 472 (762)
Q Consensus 404 ~~~~~l~~~~-~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i 472 (762)
+++++|++.+ .++.|+++|+.+. +..+++....... .........+..+|+| .++++..+ |.|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~---~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKK---VSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHH---HHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccc---ccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 7788877755 4778999999764 6666663100000 0000244567889999 66666555 78999
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc---c---CC----CceeEEEEEEecCCCce
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE---E---GI----GSLVCLKFWVSGTQNKE 542 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~---~---~~----~~d~~i~iwd~~~~~~~ 542 (762)
+|..+.+.+.++...... ......+.|+|+++.++++....+. . .. ....+|.+||+.+++..
T Consensus 169 lD~~T~~v~~~~~~~~~~-------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGD-------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp ECTTTCCEEEECCSBCTT-------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred EECCCCeEEEEEccCCCC-------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 999999887776532111 1223468889999999888521000 0 00 14679999999987555
Q ss_pred eEEEEEeecCCCCCceEEEEE--cCCCCeEEEEeC------CCcEEEEEcccccccccccCCceeeee---ec-------
Q 040987 543 FTLSTIVYEPHRDAGISAVAF--HPNRRAAVSSSY------GGDFKVWICNDELQQKDLQSSGWSCHA---VG------- 604 (762)
Q Consensus 543 ~~~~~~~~~~h~~~~v~~~~~--spd~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~------- 604 (762)
.++. .+........+.| +|+++++++++. +++|.+|..+.+........ ...... ..
T Consensus 242 ~tI~----vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI-di~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 242 HSLT----LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI-EIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp EEEE----SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE-EECCEECCSSCCGGGGGG
T ss_pred eEEe----cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE-eCCCcccccccccccccc
Confidence 4443 2210123445555 999998887764 56888777654321111000 000000 00
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC---CeEEEEecccc--------------CceeEEEEeCCCCEEE
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR---NVLVAVIGETL--------------TPIMNMSFVGSSEYLV 665 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~---~~~~~~l~~~~--------------~~v~~~~~s~dg~~l~ 665 (762)
.+.......+.+||||++|.++. .+.|.+||+.. .+++..+.... +.-..++++|||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 00024578899999999999986 79999999863 35565553220 1247899999999999
Q ss_pred EEE
Q 040987 666 ATS 668 (762)
Q Consensus 666 s~~ 668 (762)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 998
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.34 E-value=1.5e-09 Score=108.74 Aligned_cols=228 Identities=14% Similarity=0.015 Sum_probs=148.9
Q ss_pred ceeEEEEecCCCE-EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
....++|+|++.. +++...++.|..||.++++.... .....+.+++++++|+++++. ...|.+||..+++......
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEEC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEee
Confidence 3467899997554 45555678999999988765433 234679999999999877754 3459999998877543322
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.... .....+..++++|+|+++++... .+.|+.++ +++ ...+... ......++|+
T Consensus 127 ~~~~------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~----------~~~~~~i~~s 187 (326)
T 2ghs_A 127 LESD------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFAD----------ISIPNSICFS 187 (326)
T ss_dssp SSTT------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEE----------ESSEEEEEEC
T ss_pred CCCC------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCC----------CcccCCeEEc
Confidence 1100 01146789999999997665432 25666666 332 2222111 2236789999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEec--CC-Cce--eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSG--TQ-NKE--FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~--~~-~~~--~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
|||+.++.+.. .++.|.+|++. ++ ... ..+.. +... ......++++++|++.++...++.|.+|
T Consensus 188 ~dg~~lyv~~~--------~~~~I~~~d~~~~~Gl~~~~~~~~~~--~~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 188 PDGTTGYFVDT--------KVNRLMRVPLDARTGLPTGKAEVFID--STGI-KGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp TTSCEEEEEET--------TTCEEEEEEBCTTTCCBSSCCEEEEE--CTTS-SSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred CCCCEEEEEEC--------CCCEEEEEEcccccCCcccCceEEEE--CCCC-CCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 99998766642 46799999986 44 321 11211 1223 4467789999999888777667889999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEc-CCCcEEEEEc
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS-ADGSVLAVAA 627 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~~ 627 (762)
|.. ++....+ ..+...+++++|+ +|++.|++++
T Consensus 257 d~~-g~~~~~i-----------~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 257 DTD-GNHIARY-----------EVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CTT-CCEEEEE-----------ECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCC-CCEEEEE-----------ECCCCCcEEEEEecCCCCEEEEEe
Confidence 984 4433322 1234568999998 8988776554
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.34 E-value=1.7e-10 Score=127.41 Aligned_cols=305 Identities=9% Similarity=0.040 Sum_probs=195.3
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC-----------e-EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP-----------L-LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----------v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+..++.++.++.|+.+|.++|+.+........ + ..+++ ++..+++++.++.+..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 45777788889999999999998543222111 0 11122 4567888889999999999999999887
Q ss_pred ccC-CCCCCCCCcccCcee-eEEEeCCCCEEEEee------cCceEEEEEcCCCCceeeEEeeccccc-CCC--------
Q 040987 433 SGI-KLPCPLPEEYKGLCR-DIAFNHDGGLVALRA------ENYCIHFYSLLDDRGISEVQVCERNHQ-PGD-------- 495 (762)
Q Consensus 433 ~~~-~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~-------- 495 (762)
... .... ...+. +..+ .++ .+++++ .++.|+.||..+++.+.++........ ...
T Consensus 148 ~~~~~~~~------~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~ 219 (689)
T 1yiq_A 148 DTRADHKR------SYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAA 219 (689)
T ss_dssp ECCSCTTS------CCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHH
T ss_pred cCcCCCCC------CccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccc
Confidence 653 1000 00111 1111 144 444443 368999999999998887653211000 000
Q ss_pred ------------CcceeEEEEEEecCCCeEEEEeeeccccCCCcee-------------------EEEEEEecCCCceeE
Q 040987 496 ------------DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV-------------------CLKFWVSGTQNKEFT 544 (762)
Q Consensus 496 ------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~-------------------~i~iwd~~~~~~~~~ 544 (762)
........++++|++..++.+. .++ .|..+|..+++..+.
T Consensus 220 ~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~---------~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 220 KTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGV---------GNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp TTCCSSTHHHHCEECCCCSCEEEETTTTEEEEEC---------CCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred cccCCceeeecCCCCccccceeEcCCCCEEEEeC---------CCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 0001113578899888888887 333 599999999999887
Q ss_pred EEEEeecCCC------CCceEEEEEcCCCC---eEEEEeCCCcEEEEEccccccccccc--CCceeeeee----------
Q 040987 545 LSTIVYEPHR------DAGISAVAFHPNRR---AAVSSSYGGDFKVWICNDELQQKDLQ--SSGWSCHAV---------- 603 (762)
Q Consensus 545 ~~~~~~~~h~------~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~---------- 603 (762)
++. .+|. ...........+|+ .++.++.+|.++++|..+++.+...+ ...|.....
T Consensus 291 ~~~---~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~ 367 (689)
T 1yiq_A 291 YQT---TPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDE 367 (689)
T ss_dssp EES---STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECH
T ss_pred eec---CCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccch
Confidence 753 2220 11122222223565 78889999999999999998764322 112322100
Q ss_pred -----ccc-----------CCCCeEEEEEcCCCcEEEEEc----------------------------------------
Q 040987 604 -----GSY-----------KKKAMTAAAFSADGSVLAVAA---------------------------------------- 627 (762)
Q Consensus 604 -----~~~-----------~~~~i~~~~~s~dg~~la~~~---------------------------------------- 627 (762)
... ....-..++|+|+..++++..
T Consensus 368 ~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 447 (689)
T 1yiq_A 368 ENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLL 447 (689)
T ss_dssp HHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHH
T ss_pred hhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCC
Confidence 000 001122478999888877652
Q ss_pred ------CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 628 ------ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 628 ------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
+|.|..||+.+|+.+-.+..+ .+.....++..+.+++.++.|+. |+.||.++|+++|++.....
T Consensus 448 ~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~--l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 448 EMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGR--VIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp HHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSSC
T ss_pred CCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCc--EEEEECCCCccceeeeCCCC
Confidence 277999999999998887654 34444567778889999999988 99999999999999987643
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.32 E-value=3.6e-10 Score=124.92 Aligned_cols=328 Identities=10% Similarity=0.039 Sum_probs=194.1
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-cce-eEEEEecCCCEEEE
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP-SEV-SVLIFSSDGAYLYS 370 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~g~~l~s 370 (762)
+..|++++.++.|..+|..+++.+-......... ...... ..+ ..++. ++..++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~---------------------~~~~~~~~~~~~~~~~--~~g~v~v 126 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRH---------------------RAGEACCDAVNRGVAV--WKGKVYV 126 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGG---------------------GGGGCTTCSCCCCCEE--ETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcc---------------------ccccccccCCCCccEE--ECCEEEE
Confidence 4467777788999999998887654221100000 000000 000 11222 3457888
Q ss_pred EecCCeEEEEecCCCceeccCCCC---CCeEEEEeCC---CCCeEEEEe------cCCcEEEEEcCCceEEEEEccCCC-
Q 040987 371 GGKEGVLVVWQLDTGKKKFLPRIG---SPLLYFTESP---DPSLSSISC------ADNQVHLLKMPSMEIIRSISGIKL- 437 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~~~~~---~~v~~~~~s~---~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~- 437 (762)
++.|+.|..+|.++|+.+...... .....+..+| ++ .++++. .++.|..||..+|+.+..+.....
T Consensus 127 ~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 205 (689)
T 1yiq_A 127 GVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD 205 (689)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred EccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC
Confidence 888999999999999985322211 1111111122 44 444443 268999999999999888753210
Q ss_pred CCCC-CC-------------------cccCceeeEEEeCCCCEEEEeecCce-------------------EEEEEcCCC
Q 040987 438 PCPL-PE-------------------EYKGLCRDIAFNHDGGLVALRAENYC-------------------IHFYSLLDD 478 (762)
Q Consensus 438 ~~~~-~~-------------------~~~~~v~~~~~s~~~~~l~~~~~dg~-------------------i~i~d~~~~ 478 (762)
+... .. ........++++|++.++++++.++. |..+|..++
T Consensus 206 p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG 285 (689)
T 1yiq_A 206 PKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG 285 (689)
T ss_dssp TTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC
T ss_pred cccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC
Confidence 0000 00 00011136889999899999888764 999999999
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe------
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV------ 549 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------ 549 (762)
+....++.......... ....+.......+|+ .++.++ .++.++++|..+++.+.......
T Consensus 286 ~~~W~~~~~~~d~wd~~-~~~~~~l~d~~~~G~~~~~v~~~~---------~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 286 EYVWHYQTTPGDAWDYT-ATQHMILAELPIDGKPRKVLMQAP---------KNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp CEEEEEESSTTCCSCCC-CCSCEEEEEEEETTEEEEEEEECC---------TTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred ceeEeeecCCccccccc-CCCCcEEEeeccCCcEEEEEEEEC---------CCCeEEEEECCCCCEeccccccccccccc
Confidence 98877654321100000 011222223334665 677777 88999999999998764332100
Q ss_pred -----------------ecCC----------CCCceEEEEEcCCCCeEEEEeC---------------------------
Q 040987 550 -----------------YEPH----------RDAGISAVAFHPNRRAAVSSSY--------------------------- 575 (762)
Q Consensus 550 -----------------~~~h----------~~~~v~~~~~spd~~~l~~~~~--------------------------- 575 (762)
+... ....-..++|+|+..++++...
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 0000 0001123788998887776532
Q ss_pred ------------------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 576 ------------------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 576 ------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
+|.|..||+.+++.+-..+ . ......-.++..+.++++++ |+.++.||.
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-------~-----~~~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-------Y-----VTIFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-------E-----SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-------C-----CCCccCccceECCCEEEEECCCCcEEEEEC
Confidence 3678899998887654332 1 12223335566788999998 999999999
Q ss_pred CCCeEEEEeccccCc-eeEEEEeCCCCEEEE
Q 040987 637 DRNVLVAVIGETLTP-IMNMSFVGSSEYLVA 666 (762)
Q Consensus 637 ~~~~~~~~l~~~~~~-v~~~~~s~dg~~l~s 666 (762)
++|+++..++...+. ..-+.|+.||+..++
T Consensus 504 ~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 504 DTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 999999887654332 245778889885544
No 234
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=6.1e-11 Score=119.06 Aligned_cols=174 Identities=9% Similarity=0.015 Sum_probs=131.1
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc--------eee-EEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG--------ISE-VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
..+..+++++...++++++.++ +.+|++..... ... .... + .. |+.++| |+++|+++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~---l------p~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE---I------PD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE---C------TT-EEEEEE--ETTEEEEE-
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee---C------CC-eeEEEE--CCCEEEEE-
Confidence 3678999999999999998886 66698754320 000 1111 1 44 999999 99999998
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
.++.|++||+.+....... ..| ...+.++.+.+.. +++++.||.+.+||+.++....
T Consensus 104 ---------~~~~l~v~dv~sl~~~~~~-----~~~-~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~------ 160 (388)
T 1xip_A 104 ---------TRNALYSLDLEELSEFRTV-----TSF-EKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ------ 160 (388)
T ss_dssp ---------ESSEEEEEESSSTTCEEEE-----EEC-SSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE------
T ss_pred ---------cCCcEEEEEchhhhccCcc-----cee-ecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc------
Confidence 3479999999887654433 234 5678887777653 8888999999999998766432
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE--EEEe------c---cccCceeEEEEeCCCCEEE
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL--VAVI------G---ETLTPIMNMSFVGSSEYLV 665 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~--~~~l------~---~~~~~v~~~~~s~dg~~l~ 665 (762)
+...|++++|||+| ++.|. ||++++|+...++. .+++ . +|...|.++.|.+++.+|+
T Consensus 161 ---------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 161 ---------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp ---------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred ---------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 24589999999999 55565 99999999988875 5556 2 3677899999999999998
Q ss_pred EEE
Q 040987 666 ATS 668 (762)
Q Consensus 666 s~~ 668 (762)
+-+
T Consensus 230 ~y~ 232 (388)
T 1xip_A 230 VFG 232 (388)
T ss_dssp EEE
T ss_pred EEc
Confidence 754
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.30 E-value=1.7e-09 Score=111.22 Aligned_cols=318 Identities=9% Similarity=0.012 Sum_probs=185.2
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
+..+++++.++.|..+|..+++..-....... ..........+... ...++..++.++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~---------------------~~~~~~~~~~~~~~-~~~~~~~v~v~~ 110 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEK---------------------DGWFSKEPALLSGG-VTVSGGHVYIGS 110 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC------------------------CCSCCCCCEEEE-EEEETTEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccc---------------------cccccccCcccccC-ceEeCCEEEEEc
Confidence 55677788889999999987765421100000 00000001122221 122455788888
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeE-EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLL-YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.++.|..+|.++++..........+. .... .+..+++++.++.+..+|..+++.+............ .....
T Consensus 111 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~-----~~~~~ 183 (376)
T 3q7m_A 111 EKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL-----RGESA 183 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee-----cCCCC
Confidence 89999999999998754332222211 1111 2457778888999999999999988877643211000 00112
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec--CCCeEEEEeeeccccCCCcee
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~d~ 529 (762)
.... +..+++++.++.+..+|..+++............... ...+..+...| .+..+.+++ .++
T Consensus 184 ~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~v~~~~---------~~g 249 (376)
T 3q7m_A 184 PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE---IDRLSDVDTTPVVVNGVVFALA---------YNG 249 (376)
T ss_dssp CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEEEC---------TTS
T ss_pred cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcc---cccccccCCCcEEECCEEEEEe---------cCc
Confidence 2222 3467888889999999999998776654321100000 00000000111 234555555 667
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCC
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
.+..+|..+++..+... ......+.. ++..++.++.++.+..+|..+++..-..+ . ....
T Consensus 250 ~l~~~d~~tG~~~w~~~--------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~-------~---~~~~ 309 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKRE--------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS-------D---LLHR 309 (376)
T ss_dssp CEEEEETTTCCEEEEEC--------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC-------T---TTTS
T ss_pred EEEEEECCCCcEEeecc--------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec-------c---cCCC
Confidence 89999999998776543 123344444 35677888889999999999887643321 0 0111
Q ss_pred CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeE-EEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 610 AMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMN-MSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 610 ~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~-~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.+..+.. .+..|++++ +|.|+++|..+|+.+.........+.. ... .+..|+.++.+|. |+.||
T Consensus 310 ~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~--l~~~~ 375 (376)
T 3q7m_A 310 LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGT--VYSIT 375 (376)
T ss_dssp CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSC--EEEEE
T ss_pred cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCE--EEEEe
Confidence 2222232 245666676 899999999999988777653333332 222 2457888888887 98886
No 236
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.27 E-value=2.5e-06 Score=92.51 Aligned_cols=450 Identities=12% Similarity=0.051 Sum_probs=247.8
Q ss_pred EEEEEeCCEEEEEEcccce-EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccce
Q 040987 87 RLLVCTSNTVSIFSTSTGL-QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSI 165 (762)
Q Consensus 87 ~la~~~~~~i~iwd~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v 165 (762)
+|..+..+.|++.|+.... ....+......+..++|++.+. .+.++=...+.|..+++........+
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~------~ly~sD~~~~~I~r~~~~g~~~~~~v------ 78 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHG------LIYWSDVSEEAIKRTEFNKTESVQNV------ 78 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTT------EEEEEETTTTEEEEEEC-----CEEE------
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCC------EEEEEECCCCeEEEEEccCCCceEEE------
Confidence 5666667889999987553 2222333445688999999763 33444444567777776543110100
Q ss_pred EEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC
Q 040987 166 FSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS 245 (762)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 245 (762)
.......+..+++.+
T Consensus 79 -----------------------------------------------------------------~~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 79 -----------------------------------------------------------------VVSGLLSPDGLACDW 93 (619)
T ss_dssp -----------------------------------------------------------------ECSSCSCEEEEEEET
T ss_pred -----------------------------------------------------------------EeCCCCCcCeEEEEe
Confidence 001123567889988
Q ss_pred CCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec--CCeEEEEeccCCceeecccc
Q 040987 246 SGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV--TGRILIWRGFGDRTFATNDN 321 (762)
Q Consensus 246 dg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--dg~v~vw~~~~~~~~~~~~~ 321 (762)
.++.|..+ ..+.|.+.++...... ............|++.|.+.+|..... .+.|...++.+.....
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~dG~~~~-----~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~---- 164 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLDGSLRK-----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI---- 164 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE----
T ss_pred cCCEEEEEeCCCCEEEEEECCCCCEE-----EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE----
Confidence 77766544 4688999998865432 222244456789999997666655542 3566666665432111
Q ss_pred cccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCC-CCCCeEE
Q 040987 322 KMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPR-IGSPLLY 399 (762)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~-~~~~v~~ 399 (762)
.....-.....++++++++.|+.+.. .+.|...|++......+.. .......
T Consensus 165 --------------------------l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~g 218 (619)
T 3s94_A 165 --------------------------IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFA 218 (619)
T ss_dssp --------------------------EECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCC
T ss_pred --------------------------EEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceE
Confidence 11112335678999998777776653 4679999987655433322 1222345
Q ss_pred EEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCC-CCC-------------CCCCc-ccCceeeEEE---------
Q 040987 400 FTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIK-LPC-------------PLPEE-YKGLCRDIAF--------- 454 (762)
Q Consensus 400 ~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-~~~-------------~~~~~-~~~~v~~~~~--------- 454 (762)
+++..+ .++.+. ..+.|...|..+++....+.... .+. ..+.. ..+....+++
T Consensus 219 i~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~ 296 (619)
T 3s94_A 219 LTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQ 296 (619)
T ss_dssp EEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEE
T ss_pred EEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCce
Confidence 666554 455443 46789999987765444332211 000 00000 0111222222
Q ss_pred --eC-------CC--------CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 455 --NH-------DG--------GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 455 --s~-------~~--------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
.| |+ .+|+.+ ..+.|+..++........ .....+ -..+..++|.+.+..|..++
T Consensus 297 C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~-~~~~~~-------l~~~~~ld~d~~~~~ly~sD 367 (619)
T 3s94_A 297 CACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDI-VLQLED-------IRHAIAIDYDPVEGYIYWTD 367 (619)
T ss_dssp EECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCE-ECCCSC-------CSSEEEEEEETTTTEEEEEE
T ss_pred EeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCcccee-EEeccc-------cCccEEEEEEcCCCeEEEEe
Confidence 11 11 123332 334566666654432111 111110 23467899999777666665
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccccccccCC
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
. ..+.|+.+++........+ ... ......+++.+.++ +.++-+..+.|.+.++.........
T Consensus 368 ~--------~~~~I~r~~~~g~~~~~v~-----~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~--- 430 (619)
T 3s94_A 368 D--------EVRAIRRSFIDGSGSQFVV-----TAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILI--- 430 (619)
T ss_dssp T--------TTTEEEEEETTSCSCEEEE-----CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---
T ss_pred C--------CCCeEEEEEcCCCccEEEE-----ECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEE---
Confidence 3 5678888888765433222 111 34567889987544 5555555678999988755322211
Q ss_pred ceeeeeecccCCCCeEEEEEcCCCcEEEEEc---CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCC
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADGSVLAVAA---ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKP 673 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~---d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~ 673 (762)
...-....++++.|...+|..+. ...|...+++...........-.....+++++++..|+.+.... +
T Consensus 431 --------~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~-~ 501 (619)
T 3s94_A 431 --------SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKT-D 501 (619)
T ss_dssp --------CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT-T
T ss_pred --------ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCC-C
Confidence 12245678999999755555543 36788888774433323333345578899999888888886544 3
Q ss_pred eEEEEECCCCce
Q 040987 674 QLSVWNMSKLSI 685 (762)
Q Consensus 674 ~v~vwd~~~~~~ 685 (762)
.|...+++....
T Consensus 502 ~I~~~~~dG~~~ 513 (619)
T 3s94_A 502 KIEVMNTDGTGR 513 (619)
T ss_dssp EEEEEESSSCCC
T ss_pred EEEEEecCCCce
Confidence 588888865543
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.24 E-value=5.6e-09 Score=107.37 Aligned_cols=280 Identities=10% Similarity=-0.003 Sum_probs=174.2
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCC----------CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRI----------GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+..++.++.++.|..+|.++++....... ...+.. ....++..+++++.++.+..+|..+++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 55788888889999999999987533222 222322 2223456778888999999999999998877654
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
... ........ +..+++++.++.|..+|..+++.+........... .......... +..++
T Consensus 132 ~~~----------~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~--~~~v~ 192 (376)
T 3q7m_A 132 AGE----------ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-----LRGESAPTTA--FGAAV 192 (376)
T ss_dssp SSC----------CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCCCEEE--TTEEE
T ss_pred CCc----------eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-----ecCCCCcEEE--CCEEE
Confidence 321 11122222 34778888899999999999988776654211100 0000111122 34566
Q ss_pred EEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC-CCceEEEEEcC--CCCeEEEEeCCCcEEEEEcccccccc
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-DAGISAVAFHP--NRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-~~~v~~~~~sp--d~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
++. .++.+..+|..+++..+........+.. ...+..+...| .+..++.++.++.+..+|..+++..-
T Consensus 193 ~g~---------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 193 VGG---------DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW 263 (376)
T ss_dssp ECC---------TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE
T ss_pred EEc---------CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe
Confidence 665 6789999999999887765421000000 00000011111 24567778889999999999887654
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeCCCCEEEEEEc
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
... ......+.. ++..|.+++ ++.|..+|..+|+.+-.... ....+..... .+..|+.++.
T Consensus 264 ~~~-------------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 264 KRE-------------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp EEC-------------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred ecc-------------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 331 122334443 345565555 89999999999988766642 2222333333 2467888888
Q ss_pred CCCCeEEEEECCCCceeeEEEEe
Q 040987 670 GSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 670 d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+|. |.++|..+|++++.+...
T Consensus 327 ~g~--l~~~d~~tG~~~~~~~~~ 347 (376)
T 3q7m_A 327 EGY--LHWINVEDGRFVAQQKVD 347 (376)
T ss_dssp TSE--EEEEETTTCCEEEEEECC
T ss_pred CCe--EEEEECCCCcEEEEEecC
Confidence 887 999999999999987753
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.19 E-value=2.5e-10 Score=115.22 Aligned_cols=300 Identities=11% Similarity=0.000 Sum_probs=185.8
Q ss_pred CceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEE
Q 040987 78 PPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLK 157 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~ 157 (762)
++.+..+|.+.+...++.|..|| .+++.+..+..+...+.++...+++ .+ +.++.+ |..+|. +|+.+.
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-------~l-~v~t~~--l~~~d~-~g~~~~ 91 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG-------TI-YFGSDK--VYAINP-DGTEKW 91 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT-------EE-CCSSCE--EEEECC-CGGGGG
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC-------cE-EEecCc--EEEECC-CCcEEE
Confidence 47777888665544478899999 8999887776666667888888888 32 344444 888886 665443
Q ss_pred EEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCC
Q 040987 158 TIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237 (762)
Q Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (762)
.+......... .++. ++.. ..++.++.|..+|.. ++... ........
T Consensus 92 ~~~~~~~~~~~-------------------~~~~--~~~l----------~v~t~~~~l~~~d~~-g~~~~-~~~~~~~~ 138 (330)
T 3hxj_A 92 RFDTKKAIVSD-------------------FTIF--EDIL----------YVTSMDGHLYAINTD-GTEKW-RFKTKKAI 138 (330)
T ss_dssp GSCC-----CC-------------------EEEE--TTEE----------EEECTTSEEEEECTT-SCEEE-EEECSSCC
T ss_pred EEECCCCcccC-------------------ceEE--CCEE----------EEEecCCEEEEEcCC-CCEEE-EEcCCCce
Confidence 32222111000 0000 0000 335678889999988 66652 23334455
Q ss_pred ceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceee
Q 040987 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFA 317 (762)
Q Consensus 238 v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~ 317 (762)
+.++...++|.+++++.++.|..+|.. ++.. .........+.++.+.+++...+ ++ +.|..+| .+++...
T Consensus 139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~-----~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 139 YATPIVSEDGTIYVGSNDNYLYAINPD-GTEK-----WRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKW 208 (330)
T ss_dssp CSCCEECTTSCEEEECTTSEEEEECTT-SCEE-----EEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEE
T ss_pred eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEe-----EEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEE
Confidence 677888889998777778999999988 5532 22223345667777877887544 44 7799999 4443221
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCC
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSP 396 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~ 396 (762)
........+.++...++|. |..++.++.+..+|.. ++.. ........
T Consensus 209 ------------------------------~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~~~~~~ 256 (330)
T 3hxj_A 209 ------------------------------NFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFKTGKRI 256 (330)
T ss_dssp ------------------------------EECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCEEEEEECSSCC
T ss_pred ------------------------------EEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCEeEEeeCCCCc
Confidence 1122234567778887775 5556667888888754 4433 22222222
Q ss_pred eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC
Q 040987 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
+..+...+++ .|.+++.++.+..+|. +++....+.... ..+.++...++++ |.+++.+|.+++....
T Consensus 257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~----------~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 257 ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS----------WIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS----------CCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC----------ccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 3344555555 5666778889999996 677666654322 4556777777776 5668899999887765
Q ss_pred C
Q 040987 477 D 477 (762)
Q Consensus 477 ~ 477 (762)
.
T Consensus 324 ~ 324 (330)
T 3hxj_A 324 E 324 (330)
T ss_dssp -
T ss_pred c
Confidence 4
No 239
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.19 E-value=1.3e-05 Score=86.90 Aligned_cols=471 Identities=10% Similarity=-0.000 Sum_probs=251.7
Q ss_pred CCeEEEEecCCcc--eeeeecCcccccCCceeecCCCEEEEEe--CCEEEEEEcccceE-EeeecCCccceeEEEEeCCC
Q 040987 52 SGLCRTAEYPAVN--SKMIRGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQ-ISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 52 ~g~i~~~~~~~~~--~~~~~~h~~~v~~~~~~s~dg~~la~~~--~~~i~iwd~~~~~~-~~~l~~h~~~V~~v~~s~~~ 126 (762)
...|+..++.... .......-.... +++|++.+..|..+. .+.|..++++.... ...+.........+++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~-~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEE-EEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceE-EEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 4778888887542 222332333344 499999888888777 48999999865532 22333333568899999966
Q ss_pred CcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccC
Q 040987 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKE 206 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (762)
. .+.++-...+.|.+.++.... ...+.
T Consensus 96 ~------~ly~~d~~~~~I~v~~~dG~~-~~~l~---------------------------------------------- 122 (619)
T 3s94_A 96 E------KLYWTDSETNRIEVSNLDGSL-RKVLF---------------------------------------------- 122 (619)
T ss_dssp T------EEEEEETTTTEEEEEETTSCS-CEEEE----------------------------------------------
T ss_pred C------EEEEEeCCCCEEEEEECCCCC-EEEEE----------------------------------------------
Confidence 3 455566667888888876432 11111
Q ss_pred CCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 207 PRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 207 ~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
...-..+..|++.|.+.+|..++ ...|...+++..... .+....-..
T Consensus 123 -------------------------~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-----~l~~~~~~~ 172 (619)
T 3s94_A 123 -------------------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-----IIINSEIYW 172 (619)
T ss_dssp -------------------------CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-----EEECSSCSS
T ss_pred -------------------------eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-----EEEeCCCCC
Confidence 01123456788888766655332 457777777654432 222233456
Q ss_pred eEEEEEcCCCcEEEEee-cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 284 LTVLAFHPTQRIVAAGD-VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.+.++++++++.|..+. ..+.|...++.+..... ...+.......+++.
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~------------------------------~~~~~~~~P~gi~~~ 222 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA------------------------------VVKGSLPHPFALTLF 222 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------------------------------------CCCEEES
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE------------------------------EEeCCCCCceEEEEe
Confidence 78999999776666553 45678888876543211 001011112345554
Q ss_pred cCCCEEEEE-ecCCeEEEEecCCCceecc-CC------------------CCC--------------------CeEEEE-
Q 040987 363 SDGAYLYSG-GKEGVLVVWQLDTGKKKFL-PR------------------IGS--------------------PLLYFT- 401 (762)
Q Consensus 363 ~~g~~l~s~-~~dg~i~~wd~~~~~~~~~-~~------------------~~~--------------------~v~~~~- 401 (762)
.+ .|+.+ ...+.|...|..+++.... .. ... ...|.+
T Consensus 223 ~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~ 300 (619)
T 3s94_A 223 ED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 300 (619)
T ss_dssp SS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECC
T ss_pred CC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCC
Confidence 33 34433 3445677666655542110 00 000 011111
Q ss_pred ----eCCCC--------CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCc
Q 040987 402 ----ESPDP--------SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENY 468 (762)
Q Consensus 402 ----~s~~~--------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg 468 (762)
+.+|+ .+|+.+ ..+.|+..++.......... +...-..+.+++|++.+..|..+ ...+
T Consensus 301 ~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~--------~~~~l~~~~~ld~d~~~~~ly~sD~~~~ 371 (619)
T 3s94_A 301 TGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVL--------QLEDIRHAIAIDYDPVEGYIYWTDDEVR 371 (619)
T ss_dssp TTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEEC--------CCSCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred chheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEE--------eccccCccEEEEEEcCCCeEEEEeCCCC
Confidence 01111 112222 33345555554322110000 00001356789999865555554 4567
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
.|+.+++...... .+... . ...+..+++.+.+..|..+.. ..+.|.+.++...... .+.
T Consensus 372 ~I~r~~~~g~~~~-~v~~~-~--------~~~p~GlAvD~~~~~lY~tD~--------~~~~I~v~~~~G~~~~-~l~-- 430 (619)
T 3s94_A 372 AIRRSFIDGSGSQ-FVVTA-Q--------IAHPDGIAVDWVARNLYWTDT--------GTDRIEVTRLNGTMRK-ILI-- 430 (619)
T ss_dssp EEEEEETTSCSCE-EEECS-S--------CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCE-EEE--
T ss_pred eEEEEEcCCCccE-EEEEC-C--------CCCcCceEEecccCcEEEEeC--------CCCcEEEEeCCCCeEE-EEE--
Confidence 8888888654322 22111 0 234668899986666666542 6678999998865432 221
Q ss_pred eecCCCCCceEEEEEcCCCCeEEEEeC--CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 549 VYEPHRDAGISAVAFHPNRRAAVSSSY--GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
... -....++++.|....|+.+.. ...|...+++........ ...-...+.++++++++.|..+
T Consensus 431 --~~~-l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~-----------~~~l~~P~GlalD~~~~~LY~a 496 (619)
T 3s94_A 431 --SED-LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV-----------NTSLGWPNGLALDYDEGKIYWG 496 (619)
T ss_dssp --CTT-CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----------CSSCSCEEEEEEETTTTEEEEE
T ss_pred --ECC-CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE-----------eCCCCCCeeeEEcccCCEEEEE
Confidence 222 456789999997445554442 356666666543322111 1224567899999988888777
Q ss_pred c--CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 627 A--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 627 ~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
. .+.|..++++.......+........+++...+ +|+.+.... ..|..-|..+|..
T Consensus 497 D~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~-~~I~~~~k~~g~~ 554 (619)
T 3s94_A 497 DAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQR-RSIERVHKRSAER 554 (619)
T ss_dssp ETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTS-SCEEEEESSSCCE
T ss_pred ECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCC-CeEEEEEcCCCce
Confidence 5 688999998755333222222222345666543 666665433 2488888888843
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.19 E-value=2.9e-08 Score=99.58 Aligned_cols=240 Identities=12% Similarity=0.059 Sum_probs=148.9
Q ss_pred cCCCEEEEE-ecCCeEEEEecCCC----ceeccC-------CCC-CCeEEEEeCCCCCeEEEEecC------CcEEEEEc
Q 040987 363 SDGAYLYSG-GKEGVLVVWQLDTG----KKKFLP-------RIG-SPLLYFTESPDPSLSSISCAD------NQVHLLKM 423 (762)
Q Consensus 363 ~~g~~l~s~-~~dg~i~~wd~~~~----~~~~~~-------~~~-~~v~~~~~s~~~~~l~~~~~d------~~i~i~d~ 423 (762)
+++++|+.. ..++.|+++|+.+. +..... ..+ .....+..+|+| .++++..+ +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 778777764 45688999999755 222211 111 234567788999 65555444 68999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-------------------cCceEEEEEcCCCCceeeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-------------------ENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~ 484 (762)
.+++.+.++.....+. ..-..+.|+|+++.+++.. ...+|.+||+.+++...++
T Consensus 172 ~T~~v~~~~~~~~~~~-------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQ-------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp TTCCEEEECCSBCTTC-------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEccCCCCc-------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999999886432211 2335688999999888874 3689999999987666665
Q ss_pred EeecccccCCCCcceeEEEEEE--ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC--------
Q 040987 485 QVCERNHQPGDDVTVVVTLVAL--SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-------- 554 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-------- 554 (762)
..... ......+.| +|+++++.+++.-.. ...+++|.+|..+.+.. ...+........
T Consensus 245 ~vg~~--------g~~P~~i~f~~~Pdg~~aYV~~e~~~---~~Lss~V~v~~~d~g~~-~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 245 TLGEE--------NRMALELRPLHDPTKLMGFINMVVSL---KDLSSSIWLWFYEDGKW-NAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp ESCTT--------EEEEEEEEECSSTTCCEEEEEEEEET---TTCCEEEEEEEEETTEE-EEEEEEEECCEECCSSCCGG
T ss_pred ecCCC--------CCccceeEeeECCCCCEEEEEEeeec---cCCCceEEEEEecCCce-eEEEEEeCCCcccccccccc
Confidence 54211 234556656 999999888872000 00245787777665321 111110000000
Q ss_pred -------CCceEEEEEcCCCCeEEEEeC-CCcEEEEEcccccccccccCCceeeeeec-----------ccCCCCeEEEE
Q 040987 555 -------DAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKDLQSSGWSCHAVG-----------SYKKKAMTAAA 615 (762)
Q Consensus 555 -------~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~ 615 (762)
......+.+||||++|.++.. .+.|.+||+.......... ..... ..-......++
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~-----~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTG-----KVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEE-----EEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE-----EEEeCCeeccccccccccCCCCCCEEE
Confidence 134678999999999988775 5789999986432211110 00111 00012357899
Q ss_pred EcCCCcEEEEEc
Q 040987 616 FSADGSVLAVAA 627 (762)
Q Consensus 616 ~s~dg~~la~~~ 627 (762)
+||||++|.+++
T Consensus 388 lSpDGk~LyVaN 399 (462)
T 2ece_A 388 ISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSSEEEEEC
T ss_pred EcCCCCEEEEEc
Confidence 999999998875
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.15 E-value=1.9e-10 Score=119.61 Aligned_cols=279 Identities=10% Similarity=-0.013 Sum_probs=166.0
Q ss_pred CCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE-e-cCCCEE
Q 040987 292 TQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF-S-SDGAYL 368 (762)
Q Consensus 292 ~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s-~~g~~l 368 (762)
||++|..... ++.|.+.|+.+.+.... + .+. ....+..+++ + |+++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~i---------------------------i-~ip-~g~~phg~~~~~~p~~~~v 150 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAI---------------------------L-EIP-NAKGIHGLRPQKWPRSNYV 150 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEE---------------------------E-ECS-SCCSEEEEEECCSSBCSEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeE---------------------------E-eCC-CCCCCcceeeeecCCCcEE
Confidence 8888887655 56799999987754320 1 111 1234667887 5 899999
Q ss_pred EEEe------------------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCc-EEEEEcCCce--
Q 040987 369 YSGG------------------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQ-VHLLKMPSME-- 427 (762)
Q Consensus 369 ~s~~------------------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~i~d~~~~~-- 427 (762)
+.++ .++.+.+.|.++.+.......+.....++.+|||+++++.+.+.. ....+..+.+
T Consensus 151 ~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 151 FCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp EEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred EEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 8884 246799999999887654444335567889999999999886531 1111111100
Q ss_pred -EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC--CCc-eeeEEeecccccCCCCcceeEEE
Q 040987 428 -IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD--DRG-ISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 428 -~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.+..+... ....+.++|++... +.|.+.|..+ ++. +..+.... ...+
T Consensus 231 d~v~V~~~~--------------~~~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg~-----------~PhG 281 (595)
T 1fwx_A 231 DHIVVFNIA--------------EIEKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIAN-----------NPHG 281 (595)
T ss_dssp EEEEEEEHH--------------HHHHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEES-----------SCCC
T ss_pred ceEEEeecc--------------ceeEeccCCCeeEE----CcEEEEeCcccCCceeEEEEecCC-----------CceE
Confidence 01111100 00113345555443 4499999998 554 45555432 3568
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce--------eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--------FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
+.++|||+++++++. .+.+|.++|+.+.+.. ...... ..- ......++|+|+|...++...
T Consensus 282 v~~sPDGk~v~V~~~--------~s~~VsVid~~~~~~~~~~~l~~~~~v~~~--v~v-G~gP~h~aF~~dG~aY~t~~l 350 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGK--------LSPTVTVLDVTRFDAVFYENADPRSAVVAE--PEL-GLGPLHTAFDGRGNAYTSLFL 350 (595)
T ss_dssp EEECTTSSEEEEECT--------TSSBEEEEEGGGHHHHHHSCCCGGGGEEEC--CBC-CSCEEEEEECTTSEEEEEETT
T ss_pred EEEcCCCCEEEEeCC--------CCCeEEEEECcccccccccccCcccceEEE--cCC-CCCcceEEECCCCeEEEEEec
Confidence 999999999998874 7789999999965310 001000 011 346788999999954556667
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccC-----CCCeEEEEEcCCCcEEEEEc--C-CeE-----------EEEeC
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYK-----KKAMTAAAFSADGSVLAVAA--E-TVI-----------TLWDP 636 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~s~dg~~la~~~--d-~~i-----------~iwd~ 636 (762)
|+.|.+||+........-+ ...........| ...-..+.++|||++|++.+ . .++ .++|+
T Consensus 351 dsqV~kwdi~~a~~~~~g~-~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~di 429 (595)
T 1fwx_A 351 DSQVVKWNIEDAIRAYAGE-KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDI 429 (595)
T ss_dssp TTEEEEEEHHHHHHHHHTC-SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEEC
T ss_pred CCcEEEEEhhHhhhhhccc-ccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEc
Confidence 8999999998732110000 000011111111 11112345689999999985 2 334 89999
Q ss_pred CCCe
Q 040987 637 DRNV 640 (762)
Q Consensus 637 ~~~~ 640 (762)
..++
T Consensus 430 s~~~ 433 (595)
T 1fwx_A 430 SGDK 433 (595)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 7654
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.15 E-value=1.3e-09 Score=109.86 Aligned_cols=319 Identities=7% Similarity=-0.055 Sum_probs=179.9
Q ss_pred EcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccce-EEEeecccccCCc
Q 040987 100 STSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSI-FSMVIPSLLRQPA 178 (762)
Q Consensus 100 d~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~ 178 (762)
|.++++++-++..+.....+..+..++ .|+.++.++.|..|| .+++.+..+.....+ .++.+
T Consensus 5 ~~~~g~~~W~~~~~~~~~~~~~~d~~g--------~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~-------- 67 (330)
T 3hxj_A 5 GVNDCKIKWEFLIGNSIDSSPILAKNG--------TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI-------- 67 (330)
T ss_dssp -------CCTTTSCEEECCCCEECTTS--------CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--------
T ss_pred ccCCceEEEEEeCCCCcccCceEccCC--------eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--------
Confidence 344555554444444434455566666 445677888999999 888876654433322 22211
Q ss_pred ccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeE
Q 040987 179 QSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKL 258 (762)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i 258 (762)
..++. . ..++.+ |..+|. +++....... .........+. ++.+.+++.++.+
T Consensus 68 ~~~g~---------------------l--~v~t~~--l~~~d~-~g~~~~~~~~-~~~~~~~~~~~-~~~l~v~t~~~~l 119 (330)
T 3hxj_A 68 GKDGT---------------------I--YFGSDK--VYAINP-DGTEKWRFDT-KKAIVSDFTIF-EDILYVTSMDGHL 119 (330)
T ss_dssp TTTTE---------------------E--CCSSCE--EEEECC-CGGGGGGSCC------CCEEEE-TTEEEEECTTSEE
T ss_pred ecCCc---------------------E--EEecCc--EEEECC-CCcEEEEEEC-CCCcccCceEE-CCEEEEEecCCEE
Confidence 01111 0 334444 888886 6665522221 12222233333 5655556668999
Q ss_pred EEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcc
Q 040987 259 LIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVR 338 (762)
Q Consensus 259 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (762)
..+|.. ++.. .....+...+.++...+++. |..++.++.|..+|.. ++...
T Consensus 120 ~~~d~~-g~~~-----~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~--------------------- 170 (330)
T 3hxj_A 120 YAINTD-GTEK-----WRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW--------------------- 170 (330)
T ss_dssp EEECTT-SCEE-----EEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE---------------------
T ss_pred EEEcCC-CCEE-----EEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE---------------------
Confidence 999988 5432 22223344566677777776 5567778899999987 43321
Q ss_pred cCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 339 DNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 339 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
.+......+.++...+++...+ ++ +.|..+| .+++... .......+.++...++|. +.+++.++.
T Consensus 171 ---------~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g 236 (330)
T 3hxj_A 171 ---------RFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGH 236 (330)
T ss_dssp ---------EEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTE
T ss_pred ---------EEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCe
Confidence 2222233456667777776544 44 7899999 6666543 233335577778887775 555667888
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
+..++. +++.+..+.... ..+..+.+.+++ .|.+++.+|.|..+|. +++........
T Consensus 237 l~~~~~-~g~~~~~~~~~~----------~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~---------- 293 (330)
T 3hxj_A 237 LYAINP-DGTEKWRFKTGK----------RIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG---------- 293 (330)
T ss_dssp EEEECT-TSCEEEEEECSS----------CCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS----------
T ss_pred EEEECC-CCCEeEEeeCCC----------CccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC----------
Confidence 888874 466655554332 223445566565 4667778888999996 56555443321
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
...+.++...++|++.+. + .+|.+++...+..
T Consensus 294 ~~~~~~~~~d~~g~l~~g-t---------~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 294 SWIIATPVIDENGTIYFG-T---------RNGKFYALFNLEH 325 (330)
T ss_dssp SCCCSCCEECTTCCEEEE-C---------TTSCEEEEEC---
T ss_pred CccccceEEcCCCEEEEE-c---------CCCeEEEEecccc
Confidence 233556677778876554 4 6677877765543
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=2.2e-08 Score=110.37 Aligned_cols=311 Identities=10% Similarity=0.060 Sum_probs=190.5
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC-----------e-EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP-----------L-LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----------v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+..++.++.++.|+.+|..+|+.+........ + ..+++ ++..+++++.++.+..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 44677777889999999999988543222111 0 11122 3567888888999999999999999887
Q ss_pred ccCCCCCCCCCcccCcee-eEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeeccccc-CCC---------
Q 040987 433 SGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQ-PGD--------- 495 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~--------- 495 (762)
....... ...+. ...+. ++ .++++.. +|.|+.+|..+++.+.++........ ...
T Consensus 144 ~~~~~~~------~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 215 (668)
T 1kv9_A 144 QTTDPAK------PYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK 215 (668)
T ss_dssp ECSCTTS------SCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred ccCCCCC------cceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence 6532110 01111 11121 33 4555543 58999999999998887754211000 000
Q ss_pred -----------CcceeEEEEEEecCCCeEEEEeeeccc-----------cCCCceeEEEEEEecCCCceeEEEEEeecCC
Q 040987 496 -----------DVTVVVTLVALSQDGSLMSTVDIKLAE-----------EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH 553 (762)
Q Consensus 496 -----------~~~~~v~~~~~sp~g~~l~~~~~~~~~-----------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h 553 (762)
........++++|+...++.+..+... +.. ..+.|..+|..+++..+..+. .+|
T Consensus 216 ~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l-~~~~v~AlD~~tG~~~W~~~~---~~~ 291 (668)
T 1kv9_A 216 TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNL-YLSSILAIRPDTGKLAWHYQV---TPG 291 (668)
T ss_dssp TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT-TTTEEEEECTTTCCEEEEEES---STT
T ss_pred cCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCce-eeeeEEEEcCCCCceeeEeec---CCC
Confidence 000111246888888888777621000 000 012599999999998887753 222
Q ss_pred CC-------CceEEEEEcCCCC---eEEEEeCCCcEEEEEccccccccccc--CCceeeeeec-----------------
Q 040987 554 RD-------AGISAVAFHPNRR---AAVSSSYGGDFKVWICNDELQQKDLQ--SSGWSCHAVG----------------- 604 (762)
Q Consensus 554 ~~-------~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~----------------- 604 (762)
. .......+..+|+ .++.++.+|.++++|..+++.+...+ ...|......
T Consensus 292 -~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 370 (668)
T 1kv9_A 292 -DSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEP 370 (668)
T ss_dssp -CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSC
T ss_pred -ccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCe
Confidence 2 2222223334665 68889999999999999998763322 1112211100
Q ss_pred ----ccC--CCCeEEEEEcCCCcEEEEE------------------------------------c-CCeEEEEeCCCCeE
Q 040987 605 ----SYK--KKAMTAAAFSADGSVLAVA------------------------------------A-ETVITLWDPDRNVL 641 (762)
Q Consensus 605 ----~~~--~~~i~~~~~s~dg~~la~~------------------------------------~-d~~i~iwd~~~~~~ 641 (762)
... ...-..++++|+..++.+. . +|.|..||+.+|+.
T Consensus 371 ~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~ 450 (668)
T 1kv9_A 371 IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA 450 (668)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE
T ss_pred eEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE
Confidence 000 0011236788877665541 1 37899999999998
Q ss_pred EEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 642 VAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 642 ~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
+-....+ .+.....+...+.+++.++.|+. |+.||.++|++++.+....
T Consensus 451 ~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~--l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 451 AWKVPYP-THWNGGTLSTAGNLVFQGTAAGQ--MHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp EEEEEES-SSCCCCEEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSS
T ss_pred EEEccCC-CCCcCceeEeCCCEEEEECCccc--chhhhhhcChhheEecCCC
Confidence 8777543 33444456667888999988887 9999999999999997653
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=3.8e-07 Score=88.39 Aligned_cols=250 Identities=10% Similarity=-0.030 Sum_probs=154.4
Q ss_pred CCEEEEEeCCEEEEEEcccceE-----EeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEE
Q 040987 85 VKRLLVCTSNTVSIFSTSTGLQ-----ISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159 (762)
Q Consensus 85 g~~la~~~~~~i~iwd~~~~~~-----~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~ 159 (762)
|++|..+..+.|+.+|+..... ...+......+.+++|++++. .+.++-..++.|.++|...+.....+
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~------~ly~~d~~~~~I~~~~~~g~~~~~~~ 74 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK------VVYWTDISEPSIGRASLHGGEPTTII 74 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT------EEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC------EEEEEECCCCEEEEEecCCCCcEEEE
Confidence 4567777767899999865432 112222234678999999763 44455556788999988654321110
Q ss_pred EeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCce
Q 040987 160 DVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQ 239 (762)
Q Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 239 (762)
......+.
T Consensus 75 ------------------------------------------------------------------------~~~~~~p~ 82 (267)
T 1npe_A 75 ------------------------------------------------------------------------RQDLGSPE 82 (267)
T ss_dssp ------------------------------------------------------------------------CTTCCCEE
T ss_pred ------------------------------------------------------------------------ECCCCCcc
Confidence 00113467
Q ss_pred EEEECCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec---CCeEEEEeccCCc
Q 040987 240 VITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV---TGRILIWRGFGDR 314 (762)
Q Consensus 240 ~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~v~vw~~~~~~ 314 (762)
.+++.|++..|..+ ..+.|.++++...... ............++++|++..|..+.. .+.|..+++.+..
T Consensus 83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-----~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred EEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-----EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence 88999987766544 4678999998754321 222222246789999997665555543 3678888875432
Q ss_pred eeecccccccccccccccCCCCcccCCccccceee-eccccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceeccCC
Q 040987 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW-HWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPR 392 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~ 392 (762)
. ..+ .........+++++++..|+.+. ..+.|.++|.+.........
T Consensus 158 ~-------------------------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~ 206 (267)
T 1npe_A 158 R-------------------------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206 (267)
T ss_dssp C-------------------------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE
T ss_pred c-------------------------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence 1 111 11223467899999877776655 45789999998655433222
Q ss_pred CCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 393 IGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.......++.. +..++++. ..+.|.++|..+++.+..+..... .....+++.|++.
T Consensus 207 ~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~---------~~p~gi~~~~~~~ 263 (267)
T 1npe_A 207 GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ---------TRLYGITIALSQC 263 (267)
T ss_dssp CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC---------CCCCCEEEECSCC
T ss_pred CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc---------cccceeeecCccC
Confidence 22334566653 45555554 467999999999998888764321 1356788888754
No 245
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.04 E-value=5.4e-05 Score=82.07 Aligned_cols=453 Identities=9% Similarity=-0.004 Sum_probs=254.0
Q ss_pred CEEEEEeCCEEEEEEcccceEEeeec-CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccc
Q 040987 86 KRLLVCTSNTVSIFSTSTGLQISSLE-GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFS 164 (762)
Q Consensus 86 ~~la~~~~~~i~iwd~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~ 164 (762)
.+|+.+..+.|+..|+++......+. ..-..+..|+|.+.+. .+.++-..++.|..+++........+.
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~------~lywtD~~~~~I~r~~~~g~~~~~v~~---- 76 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDN------RIYWTDISLKTISRAFMNGSALEHVVE---- 76 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTT------EEEEEETTTTEEEEEETTSCSCEEEEC----
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCC------EEEEEECCCCeEEEEECCCCCcEEEEe----
Confidence 47777788999999998765433332 2235688999999774 444555567888888876432211110
Q ss_pred eEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEEC
Q 040987 165 IFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITIS 244 (762)
Q Consensus 165 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 244 (762)
.....+..+++.
T Consensus 77 --------------------------------------------------------------------~g~~~P~GlAvD 88 (628)
T 4a0p_A 77 --------------------------------------------------------------------FGLDYPEGMAVD 88 (628)
T ss_dssp --------------------------------------------------------------------SSCSCCCEEEEE
T ss_pred --------------------------------------------------------------------CCCCCcceEEEE
Confidence 011245677888
Q ss_pred CCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee--cCCeEEEEeccCCceeeccc
Q 040987 245 SSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD--VTGRILIWRGFGDRTFATND 320 (762)
Q Consensus 245 pdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~dg~v~vw~~~~~~~~~~~~ 320 (762)
+.+..|..+ ..+.|.+.++...... ............+++.|...+|.... ..+.|...++.+...
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~-----~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----- 158 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHRQ-----VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----- 158 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTCE-----EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcEE-----EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-----
Confidence 776666543 4578889988765432 22223445678999999655565554 246777777655421
Q ss_pred ccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCCCCeEE
Q 040987 321 NKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIGSPLLY 399 (762)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~v~~ 399 (762)
..+-..-.....++++++++.|+.+.. .+.|...|++......+.........
T Consensus 159 --------------------------~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~g 212 (628)
T 4a0p_A 159 --------------------------TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFG 212 (628)
T ss_dssp --------------------------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEE
T ss_pred --------------------------EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceE
Confidence 111123345688999998878777654 47899999876554333333344567
Q ss_pred EEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCC-CC------------CCCCc-ccCceeeEEEe---------
Q 040987 400 FTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKL-PC------------PLPEE-YKGLCRDIAFN--------- 455 (762)
Q Consensus 400 ~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~-~~------------~~~~~-~~~~v~~~~~s--------- 455 (762)
+++.. + .++.+. ..+.|...|..+++....+..... +. ..+.. ..+....+++.
T Consensus 213 lav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~ 290 (628)
T 4a0p_A 213 LTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCG 290 (628)
T ss_dssp EEEET-T-EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEE
T ss_pred EEEEC-C-EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEE
Confidence 77654 3 444444 467888888776654433322110 00 00000 01122222221
Q ss_pred --------CCCC-------EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 456 --------HDGG-------LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 456 --------~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
+|++ +|+.+ ....|+-..+...... ....... . ...+..++|.+.+..|..++.
T Consensus 291 C~~g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~l~~~~~~-~~~l~~~------~-~~~~~~ld~d~~~~~iy~sD~-- 359 (628)
T 4a0p_A 291 CPAHYSLNADNRTCSAPTTFLLFS-QKSAINRMVIDEQQSP-DIILPIH------S-LRNVRAIDYDPLDKQLYWIDS-- 359 (628)
T ss_dssp CSTTCEECTTSSCEECCSSEEEEE-ETTEEEEECCCTTCCC-CEECCCT------T-CSCEEEEEEETTTTEEEEEET--
T ss_pred cCCCcEecccCCcCccccceeeee-ccceEEEEecccccCc-eEEEEeh------h-cCCceEEEEecCCCeEEEEec--
Confidence 1211 22222 2233433333221110 0000000 0 234788999998877777763
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEe-ecCCCCCceEEEEEcCCCCeEE-EEeCCCcEEEEEcccccccccccCCce
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIV-YEPHRDAGISAVAFHPNRRAAV-SSSYGGDFKVWICNDELQQKDLQSSGW 598 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~h~~~~v~~~~~spd~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~ 598 (762)
..+.|+.++.........+.... .... ......+++...++.|. +-+..+.|.+.++..... ..+
T Consensus 360 ------~~~~I~r~~~~g~~~~~v~~~~~~~~~~-~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~-~~l----- 426 (628)
T 4a0p_A 360 ------RQNMIRKAQEDGSQGFTVVVSSVPSQNL-EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSV-GVV----- 426 (628)
T ss_dssp ------TTTEEEEEETTSCSCEEEEC---------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEE-EEE-----
T ss_pred ------CcceEEEEEcCCCCceEEEEcccccccc-cCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeE-EEE-----
Confidence 45678888876544322221100 0001 34678999998766554 555667899998864322 221
Q ss_pred eeeeecccCCCCeEEEEEcCCCcEEEEEc--CC--eEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCe
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSVLAVAA--ET--VITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQ 674 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~--~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~ 674 (762)
.........++++.|...+|.... .. .|...+++...........-...+.+++.++++.|+.+.... +.
T Consensus 427 -----~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~-~~ 500 (628)
T 4a0p_A 427 -----LKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL-RR 500 (628)
T ss_dssp -----EECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT-TE
T ss_pred -----EeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC-CE
Confidence 112245688999999444444433 33 677777774433333333334568999999888888876543 24
Q ss_pred EEEEECCCCc
Q 040987 675 LSVWNMSKLS 684 (762)
Q Consensus 675 v~vwd~~~~~ 684 (762)
|...+++...
T Consensus 501 I~~~~~dG~~ 510 (628)
T 4a0p_A 501 IESSDLSGAN 510 (628)
T ss_dssp EEEEETTSCS
T ss_pred EEEEeCCCCc
Confidence 8889985543
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.00 E-value=2.6e-10 Score=116.29 Aligned_cols=257 Identities=11% Similarity=-0.008 Sum_probs=142.4
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
++..+++++.|+.|+.||..+|+....... ..+.+..+..++..+++++.|+.++.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~------ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP------ 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc------
Confidence 567899999999999999999998644333 4444444556777888778999999999998887666543210
Q ss_pred cccCcee-eEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 444 EYKGLCR-DIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 444 ~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
..+. ...+. ++..+++++.++.++.||..+++....+... . ...++|++..+++++
T Consensus 81 ---~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~----------~----~~~~~p~~~~v~~~~----- 137 (369)
T 2hz6_A 81 ---ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA----------F----ADSLSPSTSLLYLGR----- 137 (369)
T ss_dssp ---HHHTTCSCC------CCCCEEEEEEEEECCC------------------------------------EEEEE-----
T ss_pred ---cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC----------C----cccccccCCEEEEEe-----
Confidence 0111 11111 3456778889999999999999887665431 1 234566888888887
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC---CeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR---RAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.++.|+.||..+++..+.+... .....+++++. ..+++++.||.++.||..+++..-..
T Consensus 138 ----~dg~v~a~d~~tG~~~W~~~~~--------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~------ 199 (369)
T 2hz6_A 138 ----TEYTITMYDTKTRELRWNATYF--------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ------ 199 (369)
T ss_dssp ----EEEEEECCCSSSSSCCCEEEEE--------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE------
T ss_pred ----cCCEEEEEECCCCCEEEeEecc--------cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe------
Confidence 7899999999999887766421 11223344432 56777889999999999988764332
Q ss_pred eeeecccCCCCe-EEEEEcCCCcEEE---EEcCCeEEEEeCCCCe----EEEEeccccCceeEEEEeC--CCCEEEEEEc
Q 040987 600 CHAVGSYKKKAM-TAAAFSADGSVLA---VAAETVITLWDPDRNV----LVAVIGETLTPIMNMSFVG--SSEYLVATSW 669 (762)
Q Consensus 600 ~~~~~~~~~~~i-~~~~~s~dg~~la---~~~d~~i~iwd~~~~~----~~~~l~~~~~~v~~~~~s~--dg~~l~s~~~ 669 (762)
. ...++ ....++++|...+ ...++.++.+|..+|+ .+-.... ...+. +| .+..|+.++.
T Consensus 200 -~-----~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~ 268 (369)
T 2hz6_A 200 -N-----YASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKY 268 (369)
T ss_dssp -E-----CSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEEC
T ss_pred -c-----CCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecc
Confidence 1 12233 3445566765321 1124456666666665 3322221 11111 22 3457888888
Q ss_pred CCCCeEEEEECC
Q 040987 670 GSKPQLSVWNMS 681 (762)
Q Consensus 670 d~~~~v~vwd~~ 681 (762)
||. |+.++..
T Consensus 269 ~G~--l~al~~~ 278 (369)
T 2hz6_A 269 STS--LYASPSM 278 (369)
T ss_dssp SSC--EECCEEE
T ss_pred cCC--EEecCcc
Confidence 887 8888776
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.99 E-value=5.9e-08 Score=104.54 Aligned_cols=311 Identities=8% Similarity=-0.054 Sum_probs=183.7
Q ss_pred CCEEEEEec-CCeEEEEec-CCCceeccCCCCCC------------eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 365 GAYLYSGGK-EGVLVVWQL-DTGKKKFLPRIGSP------------LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 365 g~~l~s~~~-dg~i~~wd~-~~~~~~~~~~~~~~------------v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
+..++.++. ++.|+.+|. ++|+.+........ ...+++ ++..+++++.++.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 346666666 788999999 89887533222111 011222 35678888889999999999999988
Q ss_pred EEccCCCCCCCCCcccCcee-eEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeeccccc----CCC----
Q 040987 431 SISGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQ----PGD---- 495 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~---- 495 (762)
......... ...+. ...+. ++ .+++++. ++.|+.+|..+++.+.++........ +..
T Consensus 140 ~~~~~~~~~------~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~ 211 (571)
T 2ad6_A 140 EVEVCDPKV------GSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSAN 211 (571)
T ss_dssp EEECCCGGG------TCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred EecCCCCCc------cceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccc
Confidence 765322100 00111 11122 34 4555554 78999999999998887664321100 000
Q ss_pred --------------------CcceeEEEEEEecCCCeEEEEeeecc--------ccCCCceeEEEEEEecCCCceeEEEE
Q 040987 496 --------------------DVTVVVTLVALSQDGSLMSTVDIKLA--------EEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 496 --------------------~~~~~v~~~~~sp~g~~l~~~~~~~~--------~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
........+++.++...+..+..+.. .+.. ..+.|..+|..+++..+..+.
T Consensus 212 ~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~-y~~~v~Ald~~tG~~~W~~~~ 290 (571)
T 2ad6_A 212 PHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK-WTMTIWGRDLDTGMAKWGYQK 290 (571)
T ss_dssp GGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT-TTTEEEEEETTTCCEEEEEES
T ss_pred ccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce-eEEEEEEEecCCCcEEEEecC
Confidence 00000123567776666666542100 0000 013699999999998877653
Q ss_pred EeecCCC-------CCceEEEEEcCCCC---eEEEEeCCCcEEEEEcccccccccccC---Cceeeeeec----------
Q 040987 548 IVYEPHR-------DAGISAVAFHPNRR---AAVSSSYGGDFKVWICNDELQQKDLQS---SGWSCHAVG---------- 604 (762)
Q Consensus 548 ~~~~~h~-------~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~---------- 604 (762)
.+|. ...+ -+...++|+ .++.++.+|.++++|..+++.+-..+. ..|......
T Consensus 291 ---~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~ 366 (571)
T 2ad6_A 291 ---TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPE 366 (571)
T ss_dssp ---STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGG
T ss_pred ---CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccc
Confidence 2220 1111 122234674 577788899999999999887644320 111110000
Q ss_pred -------------cc--CCCCeEEEEEcCCCcEEEEEc--------------------------------------CCeE
Q 040987 605 -------------SY--KKKAMTAAAFSADGSVLAVAA--------------------------------------ETVI 631 (762)
Q Consensus 605 -------------~~--~~~~i~~~~~s~dg~~la~~~--------------------------------------d~~i 631 (762)
.. ....-..++++|+..++.+.. ++.|
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l 446 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI 446 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE
Confidence 00 000013467888877776542 4789
Q ss_pred EEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 632 TLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 632 ~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
..||..+|+.+-..... .++....+...+..++.++.|+. |+.||.++|+++|++....
T Consensus 447 ~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~--l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 447 RAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGY--LKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSS
T ss_pred EEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCe--EEEEECCCCCEEEEEeCCC
Confidence 99999999988777532 33333334445667888888887 9999999999999998664
No 248
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.98 E-value=2.4e-10 Score=116.56 Aligned_cols=229 Identities=10% Similarity=0.031 Sum_probs=127.4
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
++..+++++.++.++.||..+|+.+..+.. . .+.+..+..++..+++++.|+.|+.||..+++.+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-----------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-----------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-----------CSCCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-----------CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence 578899999999999999999999988865 2 2233334567777888889999999999988776554
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
......... ..+ .+. ++..+++++ .++.++.||..+++..+.+.. + . ...++
T Consensus 76 ~~~~~~~~~----~sp----~~~-~~~~v~~g~---------~dg~v~a~D~~tG~~~w~~~~-----~-~----~~~~~ 127 (369)
T 2hz6_A 76 PFTIPELVQ----ASP----CRS-SDGILYMGK---------KQDIWYVIDLLTGEKQQTLSS-----A-F----ADSLS 127 (369)
T ss_dssp SCCHHHHHT----TCS----CC------CCCCE---------EEEEEEEECCC---------------------------
T ss_pred eccCccccc----cCc----eEe-cCCEEEEEe---------CCCEEEEEECCCCcEEEEecC-----C-C----ccccc
Confidence 322110000 000 111 344566666 778999999999988776632 2 1 23556
Q ss_pred CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC---cEEEEEc-CCeEEEEeCCCCe
Q 040987 565 PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG---SVLAVAA-ETVITLWDPDRNV 640 (762)
Q Consensus 565 pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg---~~la~~~-d~~i~iwd~~~~~ 640 (762)
|++..+++++.|+.|+.||..+++..-... . ......++++++ ..+++++ ||.|+.||..+|+
T Consensus 128 p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-------~------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 128 PSTSLLYLGRTEYTITMYDTKTRELRWNAT-------Y------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp -----EEEEEEEEEEECCCSSSSSCCCEEE-------E------EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred ccCCEEEEEecCCEEEEEECCCCCEEEeEe-------c------ccccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 788899999999999999999887654331 0 011223333432 3444555 9999999999999
Q ss_pred EEEEeccccCcee-EEEEeCCCCEE----EEEEcCCCCeEEEEECCCCc----eeeEEEE
Q 040987 641 LVAVIGETLTPIM-NMSFVGSSEYL----VATSWGSKPQLSVWNMSKLS----ISWSYLL 691 (762)
Q Consensus 641 ~~~~l~~~~~~v~-~~~~s~dg~~l----~s~~~d~~~~v~vwd~~~~~----~~~~~~~ 691 (762)
.+-... ...++. ...+++||... +.+ ++. ++.+|..+|+ ++|.+..
T Consensus 195 ~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~--l~~ld~~tG~~~~~~~W~~~~ 249 (369)
T 2hz6_A 195 VLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VET--LRYLTFMSGEVGRITKWKYPF 249 (369)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHH--HHHHHHHHHHHHHHHTSCCCC
T ss_pred EEEEec-CCCceEEEEEecCCceEeccceeec--ccc--eeeeehhcCCcccceeeeecc
Confidence 887765 334443 34555666532 222 333 7778887787 7776653
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.98 E-value=6.5e-07 Score=86.71 Aligned_cols=256 Identities=10% Similarity=-0.021 Sum_probs=151.9
Q ss_pred CCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe-ecCCeEEEEeccCCceeecccccccc
Q 040987 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG-DVTGRILIWRGFGDRTFATNDNKMNL 325 (762)
Q Consensus 247 g~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~dg~v~vw~~~~~~~~~~~~~~~~~ 325 (762)
|++|..+..+.|+.+++....................+..++|+++++.|..+ ..++.|..++..+....
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--------- 71 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--------- 71 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---------
Confidence 34666655668999998765431000011222223467899999976655554 45688999998654211
Q ss_pred cccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceeccCC-CCCCeEEEEeC
Q 040987 326 NLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPR-IGSPLLYFTES 403 (762)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~-~~~~v~~~~~s 403 (762)
............+++++++..|+.+. ..+.|.+++.+......+.. .......++++
T Consensus 72 ---------------------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd 130 (267)
T 1npe_A 72 ---------------------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD 130 (267)
T ss_dssp ---------------------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred ---------------------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEe
Confidence 11111224568899999766666554 45789999987544332222 22467889999
Q ss_pred CCCCeEEEEec---CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCC
Q 040987 404 PDPSLSSISCA---DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDR 479 (762)
Q Consensus 404 ~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~ 479 (762)
|++..|+.+.. .+.|..+++.... ...+.... . .....+++++++..|..+ ...+.|..+|.....
T Consensus 131 ~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~--~-------~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 131 PVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDN--L-------GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp TTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTT--C-------SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred eCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECC--C-------CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 97776666654 3678888876432 22221111 1 456889999987766554 456789999987532
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~ 559 (762)
.. .+.. . ......++.. +..|..+.. ..+.|..+|..+++....+.. +. .....
T Consensus 201 ~~-~~~~--~--------~~~P~gi~~d--~~~lyva~~--------~~~~v~~~d~~~g~~~~~i~~----g~-~~~p~ 254 (267)
T 1npe_A 201 RR-KVLE--G--------LQYPFAVTSY--GKNLYYTDW--------KTNSVIAMDLAISKEMDTFHP----HK-QTRLY 254 (267)
T ss_dssp EE-EEEE--C--------CCSEEEEEEE--TTEEEEEET--------TTTEEEEEETTTTEEEEEECC----SS-CCCCC
T ss_pred eE-EEec--C--------CCCceEEEEe--CCEEEEEEC--------CCCeEEEEeCCCCCceEEEcc----cc-ccccc
Confidence 22 1111 1 1123455554 455555542 567899999988876655532 11 12355
Q ss_pred EEEEcCCCC
Q 040987 560 AVAFHPNRR 568 (762)
Q Consensus 560 ~~~~spd~~ 568 (762)
.+++.|++.
T Consensus 255 gi~~~~~~~ 263 (267)
T 1npe_A 255 GITIALSQC 263 (267)
T ss_dssp CEEEECSCC
T ss_pred eeeecCccC
Confidence 677777753
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=1.4e-07 Score=101.28 Aligned_cols=314 Identities=8% Similarity=-0.009 Sum_probs=183.8
Q ss_pred CCEEEEEec-CCeEEEEec-CCCceeccCCCCCC------------eEEEEeCCCCCe----EEEEecCCcEEEEEcCCc
Q 040987 365 GAYLYSGGK-EGVLVVWQL-DTGKKKFLPRIGSP------------LLYFTESPDPSL----SSISCADNQVHLLKMPSM 426 (762)
Q Consensus 365 g~~l~s~~~-dg~i~~wd~-~~~~~~~~~~~~~~------------v~~~~~s~~~~~----l~~~~~d~~i~i~d~~~~ 426 (762)
+..++.++. ++.|.-+|. ++|+.+........ ...++++|.+.. +++++.++.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 346666776 788999999 89887533222111 122445444444 888889999999999999
Q ss_pred eEEEEEccCCCCCCCCCcccCcee-eEEEeCCCCEEEEee------cCceEEEEEcCCCCceeeEEeeccccc----CCC
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRA------ENYCIHFYSLLDDRGISEVQVCERNHQ----PGD 495 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~ 495 (762)
+.+.......... ...+. ...+. ++ .+++++ .++.|+.+|..+++.+.++........ +..
T Consensus 142 ~~~W~~~~~~~~~------~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~ 213 (599)
T 1w6s_A 142 ETVWKVENSDIKV------GSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDF 213 (599)
T ss_dssp CEEEEEECCCGGG------TCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred CEEEeecCCCCCc------cceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence 9987765322100 00111 11222 34 455554 378999999999998877764322100 000
Q ss_pred -------------------C---c-ce-eEEEEEEecCCCeEEEEeeec-c-------ccCCCceeEEEEEEecCCCcee
Q 040987 496 -------------------D---V-TV-VVTLVALSQDGSLMSTVDIKL-A-------EEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 496 -------------------~---~-~~-~v~~~~~sp~g~~l~~~~~~~-~-------~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
+ . .. .-..+++.++...+..+..+. + .+.. ....|..+|.++++..+
T Consensus 214 ~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~-y~~sv~Ald~~TG~~~W 292 (599)
T 1w6s_A 214 NIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK-WTMTIFGRDADTGEAKF 292 (599)
T ss_dssp TTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT-TSSEEEEEETTTCCEEE
T ss_pred ccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc-ccceEEEEeCCCCceee
Confidence 0 0 00 001356667777777665210 0 0000 12489999999999888
Q ss_pred EEEEEeecCCCCC-------ceEEEEEc-CCC---CeEEEEeCCCcEEEEEcccccccccccC---Cceeeeeecc----
Q 040987 544 TLSTIVYEPHRDA-------GISAVAFH-PNR---RAAVSSSYGGDFKVWICNDELQQKDLQS---SGWSCHAVGS---- 605 (762)
Q Consensus 544 ~~~~~~~~~h~~~-------~v~~~~~s-pd~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~---- 605 (762)
..+. .+| .. ...-+... .+| +.++.++.+|.++++|..+++.+-..+. ..|.......
T Consensus 293 ~~q~---~~~-d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 368 (599)
T 1w6s_A 293 GYQK---TPH-DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP 368 (599)
T ss_dssp EEES---STT-CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred Eeec---CCC-ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence 7753 223 21 11112222 467 5677788999999999999887654320 1111100000
Q ss_pred ---------------------cCCCCeEEEEEcCCCcEEEEE--------------------------------------
Q 040987 606 ---------------------YKKKAMTAAAFSADGSVLAVA-------------------------------------- 626 (762)
Q Consensus 606 ---------------------~~~~~i~~~~~s~dg~~la~~-------------------------------------- 626 (762)
.....-..++++|+.+++.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~ 448 (599)
T 1w6s_A 369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN 448 (599)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence 000111246677776665442
Q ss_pred --cCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 627 --AETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 627 --~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.+|.|..||+.+|+.+-.... ..+...-...-.+.+++.++.|+. |+.||.++|+++|+++....
T Consensus 449 ~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~--l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 449 YEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGY--LKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp TBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSSC
T ss_pred CCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCe--EEEEECCCCCEEEEeeCCCC
Confidence 136789999999988776642 222222223335677888999987 99999999999999987643
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=9.1e-08 Score=90.22 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=137.5
Q ss_pred eeEEEEecCCCEEEEEec--CCeEEEEecCCCceeccCCCCCC--eEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEE
Q 040987 356 VSVLIFSSDGAYLYSGGK--EGVLVVWQLDTGKKKFLPRIGSP--LLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~ 430 (762)
...+.|++|+...++.+. ++.|.++|+.+++.......+.. ...+++. ++.|+.+. .++.+.++|..+++.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 578999998754444443 57999999999998654332222 2334443 55565554 47899999999999999
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
++.... + ....+++||+.++++..++.|.++|..+.+....+.....+.. -..+..+.|. +|
T Consensus 101 ~i~~g~-~-----------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p-----~~~~nele~~-dg 162 (266)
T 2iwa_A 101 NFTHQM-K-----------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR-----VIRLNELEYI-NG 162 (266)
T ss_dssp EEECCS-S-----------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE-----CCCEEEEEEE-TT
T ss_pred EEECCC-C-----------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc-----cccceeEEEE-CC
Confidence 886431 1 1244667888888777789999999999888887765432110 1236778888 77
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee------cCC-CCCceEEEEEcCCCCeE-EEEeCCCcEEEE
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY------EPH-RDAGISAVAFHPNRRAA-VSSSYGGDFKVW 582 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~h-~~~~v~~~~~spd~~~l-~~~~~dg~i~iw 582 (762)
+..+... .++.|.+.|..+++....+..... ..+ .....+.++|+|+++.+ +++...+.+.+.
T Consensus 163 ~lyvn~~---------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 163 EVWANIW---------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEET---------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEEEecC---------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 5554443 567999999999988777653100 001 01356899999998755 455567788888
Q ss_pred Ecccc
Q 040987 583 ICNDE 587 (762)
Q Consensus 583 d~~~~ 587 (762)
++...
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 87654
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=5.6e-07 Score=99.13 Aligned_cols=331 Identities=11% Similarity=0.071 Sum_probs=188.4
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-cce-eEEEEecCCCEEEE
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP-SEV-SVLIFSSDGAYLYS 370 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~g~~l~s 370 (762)
+..|++++.++.|.-+|..+++.+-......... ...... ..+ ..+++ .+..++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~---------------------~~~~~~~~~~~~~~~~--~~~~v~v 122 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKV---------------------KARTSCCDAVNRGVAL--WGDKVYV 122 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGG---------------------GGGGCTTCSCCCCCEE--EBTEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCcc---------------------ccccccccCCccceEE--ECCEEEE
Confidence 4456777778899999988887654221100000 000000 000 11222 2457888
Q ss_pred EecCCeEEEEecCCCceeccCCCCC--CeEEEEeCC--CCCeEEEEec------CCcEEEEEcCCceEEEEEccCCC-CC
Q 040987 371 GGKEGVLVVWQLDTGKKKFLPRIGS--PLLYFTESP--DPSLSSISCA------DNQVHLLKMPSMEIIRSISGIKL-PC 439 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~-~~ 439 (762)
++.|+.|..+|.++|+.+....... ....+..+| .+..++++.. ++.|..+|..+|+.+..+..... +.
T Consensus 123 ~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~ 202 (668)
T 1kv9_A 123 GTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPA 202 (668)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred EcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCC
Confidence 8889999999999999853222110 000011111 1335555543 48899999999999988754211 10
Q ss_pred CC-CC-------------------cccCceeeEEEeCCCCEEEEeecCce-------------------EEEEEcCCCCc
Q 040987 440 PL-PE-------------------EYKGLCRDIAFNHDGGLVALRAENYC-------------------IHFYSLLDDRG 480 (762)
Q Consensus 440 ~~-~~-------------------~~~~~v~~~~~s~~~~~l~~~~~dg~-------------------i~i~d~~~~~~ 480 (762)
.. .. ........++++|+...+++++.++. |..+|..+++.
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~ 282 (668)
T 1kv9_A 203 LPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL 282 (668)
T ss_dssp SCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred ccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce
Confidence 00 00 00011235789998888888887763 99999999998
Q ss_pred eeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe------ec
Q 040987 481 ISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV------YE 551 (762)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~ 551 (762)
....+.......... ...+.....+..+|+ .++.++ .++.++++|..+++.+....... +.
T Consensus 283 ~W~~~~~~~~~wd~~-~~~~~~~~d~~~~G~~~~~v~~~~---------~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 283 AWHYQVTPGDSWDFT-ATQQITLAELNIDGKPRKVLMQAP---------KNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp EEEEESSTTCCSCCC-CCSCEEEEEEEETTEEEEEEEECC---------TTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred eeEeecCCCcccccc-CCCCcEEEEeccCCcEEEEEEEEC---------CCCEEEEEECCCCCEeccccccccccccccc
Confidence 877764321100000 012233333445775 677777 88999999999998764332100 00
Q ss_pred CCCCC------------------------ceEEEEEcCCCCeEEEEe---------------------------------
Q 040987 552 PHRDA------------------------GISAVAFHPNRRAAVSSS--------------------------------- 574 (762)
Q Consensus 552 ~h~~~------------------------~v~~~~~spd~~~l~~~~--------------------------------- 574 (762)
..... .-..++++|+..+++...
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 00000 011267788766655421
Q ss_pred ---CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccC
Q 040987 575 ---YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLT 650 (762)
Q Consensus 575 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~ 650 (762)
.+|.|..||+.+++.+-.. .. ........+...+.++++++ |+.++.||.++|+.+..++....
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~-------~~-----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~ 500 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKV-------PY-----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG 500 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEE-------EE-----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCccceEEEEeCCCCcEEEEc-------cC-----CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCC
Confidence 2367888999888764333 11 12222334445778888888 99999999999999988865432
Q ss_pred ce-eEEEEeCCCC-EEEEEE
Q 040987 651 PI-MNMSFVGSSE-YLVATS 668 (762)
Q Consensus 651 ~v-~~~~~s~dg~-~l~s~~ 668 (762)
.. .-+.+..+|+ +++.++
T Consensus 501 ~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 501 IVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCSCCEEEEETTEEEEEEEE
T ss_pred cccCceEEEECCEEEEEEEe
Confidence 21 2345566777 444444
No 253
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.95 E-value=0.00012 Score=79.33 Aligned_cols=528 Identities=9% Similarity=-0.024 Sum_probs=276.4
Q ss_pred CCCeEEEEecCCcceeee--ecCcccccCCceeecCCCEEEEEe--CCEEEEEEcccceEEeeecCCccceeEEEEeCCC
Q 040987 51 SSGLCRTAEYPAVNSKMI--RGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 51 ~~g~i~~~~~~~~~~~~~--~~h~~~v~~~~~~s~dg~~la~~~--~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~ 126 (762)
..+.|+..++.+...... .+.-..+. +++|.+++..|..+. ++.|..+++..+.....+.........+++.+.+
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~-~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEAS-ALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceE-EEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 347888889886543322 12223344 499999887877776 4899999986554433343333567889999876
Q ss_pred CcccceeeeEEeeecCCeEEEEeCCCcceEEEEEec-cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCcc
Q 040987 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVK-FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKK 205 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
. ++.++-...+.|.+.++........+... .....+++ .+... ..|+..
T Consensus 92 ~------~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iav--------dp~~G----~lY~tD------------ 141 (628)
T 4a0p_A 92 K------NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALAL--------DPAEG----FMYWTE------------ 141 (628)
T ss_dssp T------EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEE--------ETTTT----EEEEEE------------
T ss_pred C------EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEE--------ccCCC----eEEEeC------------
Confidence 4 45556666789999998754322222111 23444443 11000 111111
Q ss_pred CCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 206 EPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 206 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
.+..+.|...+++..... .+...-..+..++++++++.|..+ ..+.|...++..... +........
T Consensus 142 ----~g~~~~I~r~~~dG~~~~--~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~------~v~~~~l~~ 209 (628)
T 4a0p_A 142 ----WGGKPKIDRAAMDGSERT--TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR------EVIADDLPH 209 (628)
T ss_dssp ----CSSSCEEEEEETTSCSCE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEEECCSC
T ss_pred ----CCCCCEEEEEeCCCCceE--EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce------EEeeccCCC
Confidence 012446666666443322 233345678999999988887654 467899999876543 223333445
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccc----cccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDN----KMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
...+++.. +....+-...+.|...|..+++....... ......+....+ .. ..++ .. ..+....+
T Consensus 210 P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q-~~-----~n~C-~~---~ng~C~~~ 278 (628)
T 4a0p_A 210 PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQ-SG-----WNEC-AS---SNGHCSHL 278 (628)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGS-CC-----CCTT-TT---TGGGCSSE
T ss_pred ceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeeccc-cc-----ceEe-cc---CCCCcchh
Confidence 66888765 44444444578888888665543221100 000000000000 00 0000 00 00111112
Q ss_pred EEe-cCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE-EEEccCCC
Q 040987 360 IFS-SDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII-RSISGIKL 437 (762)
Q Consensus 360 ~~s-~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~ 437 (762)
+.. |.+.+-..+ ..|...-.| ...|. .+ ..+|+.+ ....|+-..+...... ..+...
T Consensus 279 C~~~~~~~~~C~C-~~g~~l~~d--------------~~~C~--~~-~~~Ll~s-~~~~i~~i~l~~~~~~~~~l~~~-- 337 (628)
T 4a0p_A 279 CLAVPVGGFVCGC-PAHYSLNAD--------------NRTCS--AP-TTFLLFS-QKSAINRMVIDEQQSPDIILPIH-- 337 (628)
T ss_dssp EEEETTTEEEEEC-STTCEECTT--------------SSCEE--CC-SSEEEEE-ETTEEEEECCCTTCCCCEECCCT--
T ss_pred hhcCCCCCeeEEc-CCCcEeccc--------------CCcCc--cc-cceeeee-ccceEEEEecccccCceEEEEeh--
Confidence 222 212222221 222110000 01111 12 2344443 3455655555432110 011100
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
.-..+..++|.+.+..|..+. ..+.|+.+++........+....... .....+..+++...++.|..+
T Consensus 338 -------~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~----~~~~~p~glAvD~~~~nLY~t 406 (628)
T 4a0p_A 338 -------SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQ----NLEIQPYDLSIDIYSRYIYWT 406 (628)
T ss_dssp -------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------CCCEEEEEEETTTTEEEEE
T ss_pred -------hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccc----cccCCcceEEeeccCCeEEEE
Confidence 014577899999766666553 45778888875433221211100000 002357899999988777665
Q ss_pred eeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCC--cEEEEEcccccccccc
Q 040987 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGG--DFKVWICNDELQQKDL 593 (762)
Q Consensus 517 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 593 (762)
+. ..+.|.+.++... ....+. ... .....++++.| .|.++.+-.... .|...+++........
T Consensus 407 d~--------~~~~I~v~~~~G~-~~~~l~----~~~-l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~ 472 (628)
T 4a0p_A 407 CE--------ATNVINVTRLDGR-SVGVVL----KGE-QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF 472 (628)
T ss_dssp ET--------TTTEEEEEETTSC-EEEEEE----ECT-TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE
T ss_pred cC--------CCCEEEEEECCCC-eEEEEE----eCC-CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE
Confidence 42 5678999988643 222221 223 45688999999 555555433222 4666666543322211
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
...-...+.+++.++++.|..+. .+.|...+++................+++... ..|+.+....
T Consensus 473 -----------~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~--~~ly~tD~~~ 539 (628)
T 4a0p_A 473 -----------FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE--NWLYWIDKQQ 539 (628)
T ss_dssp -----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET--TEEEEEETTT
T ss_pred -----------eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC--CEEEEEECCC
Confidence 11234678999999888887775 68999999965433222223333456777755 4555555443
Q ss_pred CCeEEEEECCCCceeeEEEEe
Q 040987 672 KPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 672 ~~~v~vwd~~~~~~~~~~~~~ 692 (762)
..|...|..+|+....+...
T Consensus 540 -~~i~~~~k~~G~~~~~i~~~ 559 (628)
T 4a0p_A 540 -QMIEKIDMTGREGRTKVQAR 559 (628)
T ss_dssp -TEEEEEETTSSSCCEEEECC
T ss_pred -CeEEEEECcCCCCcEEEecc
Confidence 24888898888866655543
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.95 E-value=8.4e-08 Score=89.03 Aligned_cols=191 Identities=9% Similarity=0.055 Sum_probs=131.9
Q ss_pred eeEEEEecCCCEEEEEecCC--eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEE
Q 040987 356 VSVLIFSSDGAYLYSGGKEG--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~ 432 (762)
...+.|+ ++.+..+.+.+| .|+.+|+++++.......+.........+++..|+... .++.+.+||..+.+.+.++
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 3678888 676666777665 89999999999865544555554433344566666654 4789999999999999998
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
.-.. ....+++|++.|+....++.|.++|..+.+....+.....+.. -..++.+.+. +|+.
T Consensus 124 ~~~~-------------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~-----~~~lNELe~~-~G~l 184 (262)
T 3nol_A 124 NYDG-------------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE-----LPELNELEWV-DGEI 184 (262)
T ss_dssp ECSS-------------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE-----CCCEEEEEEE-TTEE
T ss_pred ECCC-------------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc-----ccccceeEEE-CCEE
Confidence 7532 2234456788888777788899999999998888776532110 1234567776 7765
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC------CCCCceEEEEEcCCCCeEEEEeC
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP------HRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
.+..- .+..|.+.|..+++....+...-+.+ ......+.++|+|+++.|+..+.
T Consensus 185 yan~w---------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 185 FANVW---------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEET---------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEc---------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 55443 56799999999998877765421111 10235689999998887776663
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.93 E-value=2e-07 Score=100.34 Aligned_cols=281 Identities=13% Similarity=0.068 Sum_probs=160.0
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC--eEEEEeCC--CCCeEEEEec------CCcEEEEEcCCceEEEEEcc
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP--LLYFTESP--DPSLSSISCA------DNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~ 434 (762)
+..++.++.|+.+..+|.++|+.+........ -..+.-+| .+..+++++. ++.|..+|..+|+.+..+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 45788888899999999999988542221110 00011111 1345555554 78999999999999887764
Q ss_pred CCCCCC---CCC------------------------cccC-ceeeEEEeCCCCEEEEeecC----------------ceE
Q 040987 435 IKLPCP---LPE------------------------EYKG-LCRDIAFNHDGGLVALRAEN----------------YCI 470 (762)
Q Consensus 435 ~~~~~~---~~~------------------------~~~~-~v~~~~~s~~~~~l~~~~~d----------------g~i 470 (762)
...... .+. ...+ ....+++.++...+..++.+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 321100 000 0000 01246777876777766532 369
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
..+|..+++.+...+......-.......++ -+...++|+ .++.++ .++.+.++|..+++.+.....
T Consensus 275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~---------~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHID---------RNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEEC---------TTSEEEEEETTTCCEEEEEES
T ss_pred EEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeC---------CCcEEEEEECCCCCEEeeecc
Confidence 9999999988777654321000000001112 123335784 566666 778999999999987766532
Q ss_pred Ee-e------cCCCCCce--------------------------EEEEEcCCCCeEEEEeC-------------------
Q 040987 548 IV-Y------EPHRDAGI--------------------------SAVAFHPNRRAAVSSSY------------------- 575 (762)
Q Consensus 548 ~~-~------~~h~~~~v--------------------------~~~~~spd~~~l~~~~~------------------- 575 (762)
.. . ......++ ..++++|+..+++....
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 10 0 00000011 24678888777766542
Q ss_pred ------------------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 576 ------------------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 576 ------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
+|.|..||..+++.+-.. .. ...+....+...+..+++++ |+.|+.+|.
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~-------~~-----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTK-------WE-----KFAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEE-------EE-----SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEe-------cC-----CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 467888888877654332 11 11122222233456677777 999999999
Q ss_pred CCCeEEEEeccccCc-eeEEEEeCCCCEEEEE
Q 040987 637 DRNVLVAVIGETLTP-IMNMSFVGSSEYLVAT 667 (762)
Q Consensus 637 ~~~~~~~~l~~~~~~-v~~~~~s~dg~~l~s~ 667 (762)
++|+++..+...... -..+.+..+|+.++..
T Consensus 493 ~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 493 KDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCCCEEEEEeCCCCcEeeeEEEEECCEEEEEE
Confidence 999999887643221 1234466777755543
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=5.5e-07 Score=84.92 Aligned_cols=208 Identities=9% Similarity=-0.076 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCcEEEEeec--CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 283 KLTVLAFHPTQRIVAAGDV--TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
....++|+||+...++.+. ++.|+++|+.+++..... .+..+ .....++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i----------------------------~l~~~-~fgeGi~ 72 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH----------------------------KMDDS-YFGEGLT 72 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE----------------------------ECCTT-CCEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE----------------------------ecCCC-cceEEEE
Confidence 4689999998754444433 579999999888655311 11111 1112344
Q ss_pred EecCCCEEEEEe-cCCeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC-
Q 040987 361 FSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL- 437 (762)
Q Consensus 361 ~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~- 437 (762)
+. ++.|+.+. .++.+.++|..+.+.......+ .. ...+++||+.++++..++.+.++|..+.+.+..+.-...
T Consensus 73 ~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 73 LL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG 148 (266)
T ss_dssp EE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred Ee--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC
Confidence 43 55555544 5689999999998875433222 21 233556888888887888999999999888887764321
Q ss_pred -CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc---cCCCCcceeEEEEEEecCCCeE
Q 040987 438 -PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH---QPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 438 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+. ..+..+.|. +++..+....++.|.+.|..+++.+..+....... ............++|+|+++.+
T Consensus 149 ~p~-------~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 149 HRV-------IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EEC-------CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred ccc-------ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 11 235678888 77655555567899999999999888887531100 0000002457899999999877
Q ss_pred EEEeeeccccCCCceeEEEEEEecCC
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
.+++. ....+.+.++...
T Consensus 221 fVTgk--------~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 221 FVTGK--------LWPKLFEIKLHLV 238 (266)
T ss_dssp EEEET--------TCSEEEEEEEEEC
T ss_pred EEECC--------CCCeEEEEEEecc
Confidence 66653 5667877777654
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.91 E-value=2.1e-07 Score=86.44 Aligned_cols=188 Identities=9% Similarity=0.060 Sum_probs=128.2
Q ss_pred CceeeEEEeCCCCEEEEeecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 447 GLCRDIAFNHDGGLVALRAENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.....+.|+ ++.++.+.+.+| .|+.+|+.+++.+.++...... ....+++ ++..|.....
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~---------FgeGit~--~g~~ly~ltw------ 104 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY---------FGEGISD--WKDKIVGLTW------ 104 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC---------CEEEEEE--ETTEEEEEES------
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc---------ceeEEEE--eCCEEEEEEe------
Confidence 355789998 676666666655 8999999999988877653221 1222333 4556655543
Q ss_pred CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 525 IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 525 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
.++.+.+||..+.+.+.++.. .++ ...+++|++.|+.+..++.|.++|..+.+....++ . ...
T Consensus 105 --~~~~v~v~D~~t~~~~~ti~~---~~e------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~-----V-~~~ 167 (262)
T 3nol_A 105 --KNGLGFVWNIRNLRQVRSFNY---DGE------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT-----V-TAH 167 (262)
T ss_dssp --SSSEEEEEETTTCCEEEEEEC---SSC------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEE-----C-EET
T ss_pred --eCCEEEEEECccCcEEEEEEC---CCC------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEE-----e-ccC
Confidence 678999999999988877753 222 12334577877777667789999999887766552 0 000
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc------------cCceeEEEEeCCCCEEEEEEcC
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET------------LTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~------------~~~v~~~~~s~dg~~l~s~~~d 670 (762)
...-..++.+.|. +|++.+..- +..|.+.|.++|+.+..+... ..-.+.++|+|+++.|+.++..
T Consensus 168 g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 168 GEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 0112445567886 777655554 789999999999998887532 1235889999998888888754
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.86 E-value=7.5e-07 Score=95.68 Aligned_cols=276 Identities=11% Similarity=0.029 Sum_probs=156.8
Q ss_pred EEEEecCCeEEEEecCCCceeccCCCCC-----CeE-EEEeCCCCCeEEEEe------cCCcEEEEEcCCceEEEEEccC
Q 040987 368 LYSGGKEGVLVVWQLDTGKKKFLPRIGS-----PLL-YFTESPDPSLSSISC------ADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~v~-~~~~s~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
|+.++.|+.|..+|.++|+.+....... .+. ...+ .++ .+++++ .++.|+.+|..+|+.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999853322111 111 1111 134 455554 3789999999999998887643
Q ss_pred CCCCC--------C--C-----------------CcccCce-eeEEEeCCCCEEEEeecC----------------ceEE
Q 040987 436 KLPCP--------L--P-----------------EEYKGLC-RDIAFNHDGGLVALRAEN----------------YCIH 471 (762)
Q Consensus 436 ~~~~~--------~--~-----------------~~~~~~v-~~~~~s~~~~~l~~~~~d----------------g~i~ 471 (762)
..... . + ......+ ..+++.++..+++.++.+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 21100 0 0 0000001 245777877788877655 3799
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe-cCC---CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS-QDG---SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
.+|..+++....++......-..+....++. +... .+| +.++.++ .++.+.++|..+++.+.....
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~---------~~G~l~~lD~~tG~~lw~~~~ 351 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD---------RNGIVYTLDRTDGALVSANKL 351 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC---------TTSEEEEEETTTCCEEEEEES
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC---------CCcEEEEEECCCCCEeecccc
Confidence 9999999888776543221000000011111 2222 567 4566666 789999999999988766542
Q ss_pred Ee-------ec-CCCCC--------------------------ceEEEEEcCCCCeEEEEe-------------------
Q 040987 548 IV-------YE-PHRDA--------------------------GISAVAFHPNRRAAVSSS------------------- 574 (762)
Q Consensus 548 ~~-------~~-~h~~~--------------------------~v~~~~~spd~~~l~~~~------------------- 574 (762)
.. .. .. .. .-..++++|+..++++..
T Consensus 352 ~~~~~~~~~~~~~~-g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~ 430 (599)
T 1w6s_A 352 DDTVNVFKSVDLKT-GQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQF 430 (599)
T ss_dssp STTCCSEEEECTTT-CCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred cCCcccccccccCC-CceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcc
Confidence 10 00 00 00 012456777766655432
Q ss_pred --------------------CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEE
Q 040987 575 --------------------YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITL 633 (762)
Q Consensus 575 --------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~i 633 (762)
.+|.+..||+.+++.+ |..... .+...-.....+.+++.++ |+.++.
T Consensus 431 ~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-------W~~~~~-----~~~~~g~~~tagg~vf~gt~dg~l~A 498 (599)
T 1w6s_A 431 FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-------WEKMER-----FAVWGGTMATAGDLVFYGTLDGYLKA 498 (599)
T ss_dssp CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-------EEEEES-----SCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred eecccceeccCCcCCcccCCCcCeEEEEECCCCCEE-------eEecCC-----CCccCcceEecCCEEEEECCCCeEEE
Confidence 2356777777766553 322211 1111111223566777787 999999
Q ss_pred EeCCCCeEEEEeccccCc-eeEEEEeCCCCE-EEEEE
Q 040987 634 WDPDRNVLVAVIGETLTP-IMNMSFVGSSEY-LVATS 668 (762)
Q Consensus 634 wd~~~~~~~~~l~~~~~~-v~~~~~s~dg~~-l~s~~ 668 (762)
||.++|+++-.++-.... ..-+.+..||+. +++.+
T Consensus 499 ~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 499 RDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 999999999877543322 233566678874 44443
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.85 E-value=6.7e-07 Score=96.34 Aligned_cols=313 Identities=12% Similarity=0.038 Sum_probs=180.1
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCCCe----------EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPL----------LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v----------~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
..++.++.++.|..+|.++|+.+......... ..+++ .+..+++++.++.+..+|..+|+.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 35555555445999999999885322211110 11122 3567788889999999999999998876543
Q ss_pred CCCCCCCCcccCce-eeEEEeC---CCC-EEEEeec------CceEEEEEcCCCCceeeEEeeccccc------------
Q 040987 436 KLPCPLPEEYKGLC-RDIAFNH---DGG-LVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQ------------ 492 (762)
Q Consensus 436 ~~~~~~~~~~~~~v-~~~~~s~---~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~------------ 492 (762)
..... ..+ ....+.. +++ .+++++. ++.|+-+|..+++.+...........
T Consensus 147 ~~~~~------~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~ 220 (582)
T 1flg_A 147 DHGAG------YTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD 220 (582)
T ss_dssp CGGGT------CBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred CCCcC------cccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence 21000 011 1112222 233 5666543 78999999999998876543100000
Q ss_pred ------CCC-------------CcceeEEEEEEecCCCeEEEEeeeccc--------cC-------CCceeEEEEEEecC
Q 040987 493 ------PGD-------------DVTVVVTLVALSQDGSLMSTVDIKLAE--------EG-------IGSLVCLKFWVSGT 538 (762)
Q Consensus 493 ------~~~-------------~~~~~v~~~~~sp~g~~l~~~~~~~~~--------~~-------~~~d~~i~iwd~~~ 538 (762)
+.+ .....-..++++|+...+..+..+... .+ ....+.|..+|..+
T Consensus 221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 000 000001245777877777766532100 00 00126899999999
Q ss_pred CCceeEEEEEeecCCCC--------CceEEEEEc-CCCC---eEEEEeCCCcEEEEEcccccccccccCC---ceeeeee
Q 040987 539 QNKEFTLSTIVYEPHRD--------AGISAVAFH-PNRR---AAVSSSYGGDFKVWICNDELQQKDLQSS---GWSCHAV 603 (762)
Q Consensus 539 ~~~~~~~~~~~~~~h~~--------~~v~~~~~s-pd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~ 603 (762)
++..+..+. .+| . ..+. +... .+|+ .++.++.+|.++++|..+++.+-..+.. .|.....
T Consensus 301 G~~~W~~q~---~~~-d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~ 375 (582)
T 1flg_A 301 GEVKWFYQH---TPN-DAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHID 375 (582)
T ss_dssp CCEEEEEES---STT-CCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEEC
T ss_pred CCEEEEEeC---CCC-CcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccc
Confidence 999887753 222 1 1111 1221 4674 7888999999999999998876543211 1111000
Q ss_pred -----------------------------cccC--CCCeEEEEEcCCCcEEEEE--------------------------
Q 040987 604 -----------------------------GSYK--KKAMTAAAFSADGSVLAVA-------------------------- 626 (762)
Q Consensus 604 -----------------------------~~~~--~~~i~~~~~s~dg~~la~~-------------------------- 626 (762)
.... ...-..++++|+..++.+.
T Consensus 376 ~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 455 (582)
T 1flg_A 376 LKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGF 455 (582)
T ss_dssp TTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccce
Confidence 0000 0001245677765554432
Q ss_pred -------c-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 627 -------A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 627 -------~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
. +|.|..||+.+|+.+-....+ .++..-.....+.+++.++.|+. ++.||.++|+++|++.....
T Consensus 456 ~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~--l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 456 RIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGY--FKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp EEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSSC
T ss_pred eecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCc--EEEEECCCCCEEEEecCCCC
Confidence 1 478999999999887766533 23332222334667888999987 99999999999999988653
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.85 E-value=2.9e-07 Score=85.33 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=129.0
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEEEccC
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSIS-CADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
..+.|+ ++.+..+.+.+|.|+.+|+++++..... .+.........++++.|+.. -.++.+.+||..+++.+.++...
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 678887 4566677778889999999999986544 44444442233345555554 35889999999999999998753
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 515 (762)
. .-..+ ++|++.|+.+..++.|.++|..+.+....+.....+.. -..++.+.|. +|+..+.
T Consensus 136 ~-----------eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~-----v~~lNeLe~~-dG~lyan 196 (268)
T 3nok_A 136 G-----------EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP-----VELINELECA-NGVIYAN 196 (268)
T ss_dssp S-----------CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE-----CCCEEEEEEE-TTEEEEE
T ss_pred C-----------ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc-----cccccccEEe-CCEEEEE
Confidence 2 11333 46678888777789999999999998888776543210 1235667776 7765554
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeec-------CCCCCceEEEEEcCCCCeEEEEe
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE-------PHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
.- ....|.+.|..+++....+....+. .....-.+.++++|+++.|+..+
T Consensus 197 vw---------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 197 IW---------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ET---------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EC---------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 43 5679999999999887776542110 11134668999999877666554
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.80 E-value=9.1e-07 Score=81.45 Aligned_cols=191 Identities=9% Similarity=0.039 Sum_probs=128.9
Q ss_pred ceeEEEEecCCCEEEEEecC--CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKE--GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSIS-CADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~ 431 (762)
-...+.|+. +.+..+.+.+ ..|+.+|+++++.......+.........++++.|+.. -.++.+.+||..+.+.+.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 355788875 5555666664 48999999999987655545444433333445555554 3588999999999999999
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
+.... ....+++|++.|+++..++.|.++|..+.+...++.....+.. -..++.+.+. +|+
T Consensus 101 i~~~~-------------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~-----~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 101 FRYPG-------------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP-----LDNLNELEWV-NGE 161 (243)
T ss_dssp EECSS-------------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE-----CCCEEEEEEE-TTE
T ss_pred EeCCC-------------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc-----cccceeeEEe-CCE
Confidence 87532 2234446777777777788999999999988888776543210 1235566665 676
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC-------CCCCceEEEEEcCCCCeEEEEe
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP-------HRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------h~~~~v~~~~~spd~~~l~~~~ 574 (762)
..+..- ....|.+.|..+++....+...-+.+ ....-.+.++++|+++.|+..+
T Consensus 162 lyanvw---------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVW---------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEET---------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEEC---------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 555443 55689999999998877765421111 1124568999999877666655
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.80 E-value=2.4e-06 Score=91.99 Aligned_cols=280 Identities=9% Similarity=0.032 Sum_probs=159.0
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCC-----CeE---EEEe-CCCCC-eEEEEec------CCcEEEEEcCCceE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS-----PLL---YFTE-SPDPS-LSSISCA------DNQVHLLKMPSMEI 428 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~v~---~~~~-s~~~~-~l~~~~~------d~~i~i~d~~~~~~ 428 (762)
+..++.++.++.|..+|.++|+.+....... .+. .+.= ..+|+ .++++.. ++.|..+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 4577788889999999999999853221111 010 1111 11233 5555543 78999999999998
Q ss_pred EEEEccCCCCC--------------CC---C-C-------------cccCceeeEEEeCCCCEEEEeec-----------
Q 040987 429 IRSISGIKLPC--------------PL---P-E-------------EYKGLCRDIAFNHDGGLVALRAE----------- 466 (762)
Q Consensus 429 ~~~~~~~~~~~--------------~~---~-~-------------~~~~~v~~~~~s~~~~~l~~~~~----------- 466 (762)
+.......... .. + + .....-..++++|+..+++++..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 87654321000 00 0 0 00001134678888777777663
Q ss_pred ---------C----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe-cCCC---eEEEEeeeccccCCCcee
Q 040987 467 ---------N----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS-QDGS---LMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 467 ---------d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~---~l~~~~~~~~~~~~~~d~ 529 (762)
| +.|..+|..+++.....+......-.......++. +... .+|+ .++.++ .++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~---------~~G 346 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD---------RNG 346 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC---------TTS
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC---------CCc
Confidence 2 58999999999988776543211000000011111 1222 4674 667776 889
Q ss_pred EEEEEEecCCCceeEEEEEe-------e-------------cC--------CCCC-----------ceEEEEEcCCCCeE
Q 040987 530 CLKFWVSGTQNKEFTLSTIV-------Y-------------EP--------HRDA-----------GISAVAFHPNRRAA 570 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~-------~-------------~~--------h~~~-----------~v~~~~~spd~~~l 570 (762)
.++++|..+++.+....... . .+ .... .-..++++|+..++
T Consensus 347 ~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 426 (582)
T 1flg_A 347 FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF 426 (582)
T ss_dssp EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence 99999999998776553210 0 00 0000 01135677766655
Q ss_pred EEEe---------------------------------CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc
Q 040987 571 VSSS---------------------------------YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS 617 (762)
Q Consensus 571 ~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 617 (762)
++.. .+|.|..||+.+++.+-.. .... .+..-...
T Consensus 427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~-------~~~~-----~~~~g~~~ 494 (582)
T 1flg_A 427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEH-------KEHL-----PLWAGVLA 494 (582)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEE-------EESS-----CCCSCCEE
T ss_pred EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEe-------cCCC-----CCcccceE
Confidence 5433 2467888888888764332 2111 11111112
Q ss_pred CCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCce-eEEEEeCCCCEEEE
Q 040987 618 ADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPI-MNMSFVGSSEYLVA 666 (762)
Q Consensus 618 ~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v-~~~~~s~dg~~l~s 666 (762)
..+.++++++ |+.++.||.++|+.+-.++...... .-+.|..||+..++
T Consensus 495 tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 2466777787 9999999999999998886543322 23677788874444
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.78 E-value=5.9e-07 Score=83.30 Aligned_cols=186 Identities=13% Similarity=0.082 Sum_probs=127.2
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
.....+.|+. +.++.+.+.+|.|+.+|+.+++.+.++ .... .....+++ +++.|.....
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~---------~FgeGit~--~g~~Ly~ltw-------- 113 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGN---------IFAEGLAS--DGERLYQLTW-------- 113 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTT---------CCEEEEEE--CSSCEEEEES--------
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC---------cceeEEEE--eCCEEEEEEc--------
Confidence 3457888884 566777778889999999999998887 3321 11223444 4555555543
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.++.+.+||..+.+.+.++.. .++ . ..++ +|++.|+.+..++.|.++|..+.+....++ . .....
T Consensus 114 ~~~~v~V~D~~Tl~~~~ti~~---~~e-G---wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~-----V-~~~g~ 178 (268)
T 3nok_A 114 TEGLLFTWSGMPPQRERTTRY---SGE-G---WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ-----V-KLRGQ 178 (268)
T ss_dssp SSCEEEEEETTTTEEEEEEEC---SSC-C---CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE-----C-EETTE
T ss_pred cCCEEEEEECCcCcEEEEEeC---CCc-e---eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE-----e-CCCCc
Confidence 678999999999988877753 222 1 2333 578888877778899999999887766552 0 00111
Q ss_pred CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc-------------cCceeEEEEeCCCCEEEEEEc
Q 040987 607 KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET-------------LTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~-------------~~~v~~~~~s~dg~~l~s~~~ 669 (762)
.-..++.+.|. +|++.+... +..|.+.|.++|+.+..+.-. .+-.+.++|+|+++.|+.++.
T Consensus 179 ~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 179 PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 12345678887 777655554 789999999999998877532 123688999998777777654
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.74 E-value=5e-06 Score=82.98 Aligned_cols=267 Identities=9% Similarity=-0.032 Sum_probs=147.5
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....+++|+++++++.++..++.|..|+..++............ .. .. .++............+..+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~----~~---~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYW----NK----AF---CENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTC----CH----HH---HTTCCCGGGHHHHCCEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccc----cc----cc---cccccchhccccCCCCceEEE
Confidence 35668899999987778888899999987654321100000000 00 00 000000000011235788999
Q ss_pred ec-CCCEEEEEecCCeEEEEecCCCceeccCC-----CCCCeEEEEeCC-CCCeEEEEec-----------------CCc
Q 040987 362 SS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPR-----IGSPLLYFTESP-DPSLSSISCA-----------------DNQ 417 (762)
Q Consensus 362 s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~v~~~~~s~-~~~~l~~~~~-----------------d~~ 417 (762)
.+ ++ .|+.+...+.|..+|..+++...+.. .......+++.+ +|++.++-.. .+.
T Consensus 88 ~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 88 NLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp ETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 97 55 45555555568888887664422211 113467899999 8876665422 267
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCc--eeeEEeecccccCC
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRG--ISEVQVCERNHQPG 494 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~ 494 (762)
+..||..+++........ .....++++|+++.|.++ +.++.|..|++..... ...+.. .
T Consensus 167 v~~~d~~~~~~~~~~~~~-----------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~----~--- 228 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKEL-----------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK----I--- 228 (322)
T ss_dssp EEEEETTTTEEEEEEEEE-----------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----C---
T ss_pred EEEEeCCCCEEEEeccCC-----------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----C---
Confidence 888888776654332221 234679999999866655 5568899999875321 111111 0
Q ss_pred CCcceeEEEEEEecCCCeEEEEeee-ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIK-LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
.. ...++++++|++.++.... ......+..+.|..+|.. ++....+... .+.....++++++ .+++++++.
T Consensus 229 ---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~--~g~~~~~~~~~~~-~~g~L~v~~ 300 (322)
T 2fp8_A 229 ---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP--PPFAGEHFEQIQE-HDGLLYIGT 300 (322)
T ss_dssp ---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC--TTTTTSCCCEEEE-ETTEEEEEC
T ss_pred ---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC--CCCccccceEEEE-eCCEEEEee
Confidence 22 6778999999876665410 000000014567777764 4433333210 1110134666666 466666665
Q ss_pred eCCCcEEEEEccc
Q 040987 574 SYGGDFKVWICND 586 (762)
Q Consensus 574 ~~dg~i~iwd~~~ 586 (762)
...+.|..+++..
T Consensus 301 ~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 301 LFHGSVGILVYDK 313 (322)
T ss_dssp SSCSEEEEEEC--
T ss_pred cCCCceEEEeccc
Confidence 5677899988753
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.74 E-value=5e-06 Score=82.92 Aligned_cols=258 Identities=10% Similarity=0.014 Sum_probs=145.8
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC----------CCCcccCceeeEEEeC-CCCEEEEe
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP----------LPEEYKGLCRDIAFNH-DGGLVALR 464 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~-~~~~l~~~ 464 (762)
....+++++++++++++..++.|..|+..+++.. .+........ ........+..+++.+ +++ |+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 3456889999998888888999999998765433 2211000000 0000013467899998 665 4444
Q ss_pred ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeec-cc-------cCCCceeEEEEEE
Q 040987 465 AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKL-AE-------EGIGSLVCLKFWV 535 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~-~~-------~~~~~d~~i~iwd 535 (762)
...+.+..+|..++.. ..+.....+. .......+++.+ +|++.++..... .. ......+.|..||
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~-----~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGV-----PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTE-----ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCC-----cccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4444588888765432 2221111100 023467899999 998766643100 00 0000247788888
Q ss_pred ecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEE
Q 040987 536 SGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA 614 (762)
Q Consensus 536 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 614 (762)
..+++....... ......++++|+++.|+.+ ...+.|.+|++...... . ....... .. ...+
T Consensus 172 ~~~~~~~~~~~~-------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-~-----~~~~~~~---~g-P~gi 234 (322)
T 2fp8_A 172 PSTKETTLLLKE-------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-T-----AEVLVKI---PN-PGNI 234 (322)
T ss_dssp TTTTEEEEEEEE-------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-C-----EEEEEEC---SS-EEEE
T ss_pred CCCCEEEEeccC-------CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-c-----cceEEeC---CC-CCCe
Confidence 776643222211 1234579999999866555 45678999998753211 0 0111111 12 6789
Q ss_pred EEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEEEecccc----CceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 615 AFSADGSVLAVAA-----------ETVITLWDPDRNVLVAVIGETL----TPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 615 ~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~~l~~~~----~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
++.++|++.++.. .+.|..+|.+ ++.+..+.... ..+..+++ .++++.++....+. |..++
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~--i~~~~ 310 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS--VGILV 310 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE--EEEEE
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCc--eEEEe
Confidence 9999998665543 2568888875 77776665432 34666776 35554444444444 88888
Q ss_pred CCC
Q 040987 680 MSK 682 (762)
Q Consensus 680 ~~~ 682 (762)
+..
T Consensus 311 ~~~ 313 (322)
T 2fp8_A 311 YDK 313 (322)
T ss_dssp C--
T ss_pred ccc
Confidence 764
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.73 E-value=1.7e-06 Score=79.65 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=126.2
Q ss_pred CceeeEEEeCCCCEEEEeecC--ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 447 GLCRDIAFNHDGGLVALRAEN--YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.....+.|++ +.++.+.+.. ..|+.+|+.+++...++......+ -..+++ ++..|.....
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f---------geGi~~--~~~~ly~ltw------ 82 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF---------GAGIVA--WRDRLIQLTW------ 82 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC---------EEEEEE--ETTEEEEEES------
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc---------eeEEEE--eCCEEEEEEe------
Confidence 4677899987 4555555554 489999999999888776543211 123333 3555555543
Q ss_pred CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 525 IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 525 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
.++.+.+||..+.+.+.++.. .++ . ..+ .+|++.|+.+..++.|.++|..+.+....++ .. ..
T Consensus 83 --~~~~v~v~D~~tl~~~~ti~~---~~~---G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~-----V~-~~ 145 (243)
T 3mbr_X 83 --RNHEGFVYDLATLTPRARFRY---PGE---G-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIK-----VT-AG 145 (243)
T ss_dssp --SSSEEEEEETTTTEEEEEEEC---SSC---C-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEE-----CE-ET
T ss_pred --eCCEEEEEECCcCcEEEEEeC---CCC---c-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEE-----Ec-cC
Confidence 678999999999988777753 222 1 233 3577777777778899999999887766552 00 00
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc------------c-CceeEEEEeCCCCEEEEEEcC
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET------------L-TPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~------------~-~~v~~~~~s~dg~~l~s~~~d 670 (762)
...-..++.+.+. +|++.+..- +..|.+.|.++|+.+..+.-. . .-.+.++++|+++.|+..+.-
T Consensus 146 g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 146 GRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 0112355667775 777665554 789999999999998877522 1 235889999988888877653
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.70 E-value=1.8e-05 Score=78.13 Aligned_cols=236 Identities=11% Similarity=0.025 Sum_probs=139.7
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC--cEEEEEcCCceEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN--QVHLLKMPSMEIIRS 431 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~d~~~~~~~~~ 431 (762)
.....++|+++|+.+++-..++.|..||.+.... ...........++++++|+++++....+ .|..++..+++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 4567899999998666665778999999876433 2233345688999999999655543332 477778777765433
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
...... .....++..+++..+++-..++.|+.+|..++.. +............... ......+ +|++
T Consensus 111 ~~~~~~---------~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~-~~~pngi--s~dg 178 (306)
T 2p4o_A 111 LTLPDA---------IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV-FPAANGL--KRFG 178 (306)
T ss_dssp EECTTC---------SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC-SCSEEEE--EEET
T ss_pred EeCCCc---------cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC-CCcCCCc--CcCC
Confidence 321110 2234455556555455544678899999765421 1100000000000000 1223445 8899
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecC-CCc--eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNK--EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
++|.++.. ..+.|..|++.. +.. ...+.. ......++++++|+++++....+.|.++|.. +
T Consensus 179 ~~lyv~d~--------~~~~I~~~~~~~~g~~~~~~~~~~-------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G 242 (306)
T 2p4o_A 179 NFLYVSNT--------EKMLLLRIPVDSTDKPGEPEIFVE-------QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-R 242 (306)
T ss_dssp TEEEEEET--------TTTEEEEEEBCTTSCBCCCEEEEE-------SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-C
T ss_pred CEEEEEeC--------CCCEEEEEEeCCCCCCCccEEEec-------cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-C
Confidence 87777753 567999999875 221 111111 1234568999999887777667889999875 3
Q ss_pred cccccccCCceeeeeecccCCCCeEEEEEc---CCCcEEEEEc
Q 040987 588 LQQKDLQSSGWSCHAVGSYKKKAMTAAAFS---ADGSVLAVAA 627 (762)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~dg~~la~~~ 627 (762)
+..... .........++++|. ||++.|.+++
T Consensus 243 ~~~~~~---------~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 243 STTIIA---------QAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp CEEEEE---------CGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CEEEEe---------ecccccCCceEEEEecccCCCCEEEEEC
Confidence 331110 001123568899998 8988777664
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.66 E-value=1.4e-05 Score=79.00 Aligned_cols=233 Identities=9% Similarity=0.032 Sum_probs=136.2
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC--ceEEE
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN--YCIHF 472 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i 472 (762)
.....++|+++++++++-..++.|..||.... ....+.. . .....++++++|+++++.... ..|..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~----------~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-E----------GKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-S----------SEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-C----------CCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 45678999999986666557889999988753 3333322 1 467889999999966554332 24777
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-eeEEEEE---
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-EFTLSTI--- 548 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~--- 548 (762)
+|..+++.. .+..... ......++..+++..+++.. ..+.|.++|..+++. .......
T Consensus 100 ~d~~~g~~~-~~~~~~~--------~~~~~g~~~~~~~~~~v~d~---------~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 100 LVKSDGTVE-TLLTLPD--------AIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp EECTTSCEE-EEEECTT--------CSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred EcCCCCeEE-EEEeCCC--------ccccCcccccCCCcEEEEEC---------CCCeEEEEeCCCCcEeEEEECCcccc
Confidence 777766532 2211111 11234444555554444432 457888888765421 1100000
Q ss_pred -eecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEccc-ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 549 -VYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICND-ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 549 -~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
...+. ....+.+ +||++.|+.+. ..+.|..+++.. +.. ... ..... ......++++++|++.++
T Consensus 162 ~~~~~~-~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~-----~~~~~----~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 162 SNSESV-FPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEP-----EIFVE----QTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp SSTTCC-SCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CCC-----EEEEE----SCCCSSEEEBTTCCEEEE
T ss_pred ccccCC-CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-Ccc-----EEEec----cCCCCCeEECCCCCEEEE
Confidence 00011 1234455 78887665554 567899999875 221 110 00000 134567899999987665
Q ss_pred Ec-CCeEEEEeCCCCeEEE--EeccccCceeEEEEe---CCCCEEEEEEcCC
Q 040987 626 AA-ETVITLWDPDRNVLVA--VIGETLTPIMNMSFV---GSSEYLVATSWGS 671 (762)
Q Consensus 626 ~~-d~~i~iwd~~~~~~~~--~l~~~~~~v~~~~~s---~dg~~l~s~~~d~ 671 (762)
.. .+.|.++|.+ |+... .+........+++|. ||++.|+.++..+
T Consensus 229 ~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 229 THIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 55 7899999986 65532 343333558899999 8988888776654
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.62 E-value=4.9e-06 Score=91.90 Aligned_cols=292 Identities=10% Similarity=0.063 Sum_probs=158.4
Q ss_pred EEEEcC-CCcEEEEeecCC-----------eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-cc
Q 040987 286 VLAFHP-TQRIVAAGDVTG-----------RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WH 352 (762)
Q Consensus 286 ~~~~sp-~~~~l~~~~~dg-----------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h 352 (762)
++++.+ +++.++.|+.+. .+.+||..+++... +..+. .+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~----------------------------~~~~~~~~ 241 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD----------------------------RTVTVTKH 241 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC----------------------------CEEEECSC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe----------------------------CcccCCCC
Confidence 566777 888888886542 57888887664221 11221 12
Q ss_pred ccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCCC--CeEEEEeCCCCCeEEEEe-cC-----CcEEEEEc
Q 040987 353 PSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIGS--PLLYFTESPDPSLSSISC-AD-----NQVHLLKM 423 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~-~d-----~~i~i~d~ 423 (762)
.....++++..+++.++.|+. +..+.+||..+.+......... .-.+++..++++.++.|+ .+ ..+.+||.
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 223345677889999999884 4689999999887755433322 223455667999999988 33 56999999
Q ss_pred CCceEEEEEccCC-CCCCCCCcccCceeeEEEeCCCCEEEEeecCc---------eEEEEEcCCCCceeeEEeeccc--c
Q 040987 424 PSMEIIRSISGIK-LPCPLPEEYKGLCRDIAFNHDGGLVALRAENY---------CIHFYSLLDDRGISEVQVCERN--H 491 (762)
Q Consensus 424 ~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~--~ 491 (762)
.+.+-.. +.... .+..... ....+..+++.++.++.+| .+..||..+..-.......... .
T Consensus 322 ~t~~W~~-~~~~~~~p~~~~~------~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~ 394 (656)
T 1k3i_A 322 SSKTWTS-LPNAKVNPMLTAD------KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394 (656)
T ss_dssp TTTEEEE-ETTSCSGGGCCCC------TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred CCCccee-CCCcccccccccc------ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccccc
Confidence 8765433 21100 0000000 0011224455555555443 5678888776533222111000 0
Q ss_pred cCCCCcceeEEEEEEec-CCCeEEEEeeecccc--CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC
Q 040987 492 QPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEE--GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~ 568 (762)
.+. ...-.++.|.. +++.++.|+...... ....-..+.+||..+..-...... ..+. ...-.+.+..|+++
T Consensus 395 ~~~---~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~mp~-~R~~~~~~~l~~g~ 468 (656)
T 1k3i_A 395 APD---AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYF-ARTFHTSVVLPDGS 468 (656)
T ss_dssp CCC---CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSS-CCBSCEEEECTTSC
T ss_pred CCC---CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC--CCCC-CcccCCeEECCCCC
Confidence 000 01123444443 777888876321000 000112678888776543221100 0111 22234556778999
Q ss_pred eEEEEeCC-----------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 569 AAVSSSYG-----------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 569 ~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
+++.|+.+ ..+.+||..+.+-. ................+.|||++++.|+
T Consensus 469 i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---------~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---------KQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---------ECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred EEEECCcccCcCcCCCCcccceEEEcCCCCcee---------ecCCCCCccccccHhhcCCCcEEEecCC
Confidence 99999854 46889998765432 2111222223334556679999999987
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.59 E-value=2.3e-06 Score=94.51 Aligned_cols=286 Identities=9% Similarity=-0.029 Sum_probs=157.8
Q ss_pred EEEEec-CCCEEEEEecCC-----------eEEEEecCCCceeccCC----CCCCeEEEEeCCCCCeEEEEec-CCcEEE
Q 040987 358 VLIFSS-DGAYLYSGGKEG-----------VLVVWQLDTGKKKFLPR----IGSPLLYFTESPDPSLSSISCA-DNQVHL 420 (762)
Q Consensus 358 ~~~~s~-~g~~l~s~~~dg-----------~i~~wd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-d~~i~i 420 (762)
.+++.+ +++.++.|+.+. .+.+||..+++...+.. ......++++..+++.+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556777 888888877532 58899999887644322 1223345677889999999884 458999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cC-----ceEEEEEcCCCCceeeEEeec-ccccC
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-EN-----YCIHFYSLLDDRGISEVQVCE-RNHQP 493 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~~-~~~~~ 493 (762)
||..+.+-...-.-.. ...-.+++..++++.++.|+ .+ ..+.+||..+++-.. +.... ... .
T Consensus 270 yd~~t~~W~~~~~~~~---------~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~-~ 338 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQV---------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPM-L 338 (656)
T ss_dssp EEGGGTEEEECCCCSS---------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGG-C
T ss_pred ecCcCCceeECCCCCc---------cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCcccccc-c
Confidence 9998765433211110 01223556677999999988 34 468999998753111 10000 000 0
Q ss_pred CCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee----cCCCCCceEEEEEc-CCCC
Q 040987 494 GDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY----EPHRDAGISAVAFH-PNRR 568 (762)
Q Consensus 494 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~h~~~~v~~~~~s-pd~~ 568 (762)
... ....+..+++.++.++.+......+....+..||..+............ ... ...-.++.|. .+++
T Consensus 339 ~~~-----~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~-~~~~~av~~~~~~~~ 412 (656)
T 1k3i_A 339 TAD-----KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD-AMCGNAVMYDAVKGK 412 (656)
T ss_dssp CCC-----TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC-CBTCEEEEEETTTTE
T ss_pred ccc-----ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCC-CCCCceEeccCCCCe
Confidence 000 0012223455555553110000000235788999987764433322111 001 1123445554 3788
Q ss_pred eEEEEeCCC-----------cEEEEEcccccccccccCCceeeeeecccCCC-CeEEEEEcCCCcEEEEEc-C-------
Q 040987 569 AAVSSSYGG-----------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKK-AMTAAAFSADGSVLAVAA-E------- 628 (762)
Q Consensus 569 ~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~dg~~la~~~-d------- 628 (762)
++++|+.++ .+.+||..+..-. .......+.. .-.+++..|+|+++++|+ +
T Consensus 413 i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~---------~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 413 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT---------VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE---------EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee---------EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 888887532 5667776654322 1110011122 223556678999999986 3
Q ss_pred ----CeEEEEeCCCCeEEE--EeccccCceeEEEEeCCCCEEEEEEc
Q 040987 629 ----TVITLWDPDRNVLVA--VIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 629 ----~~i~iwd~~~~~~~~--~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
..+.+||..+++... .+...+.......+.+||+.+++||.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 468999998876433 22222222344566799999999985
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.56 E-value=0.00029 Score=69.95 Aligned_cols=282 Identities=11% Similarity=0.113 Sum_probs=149.1
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
...+.++.|.+++..+++| .+|.| +.....++...... .........+..+.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~--------------------------~~~~~~~~~~~~i~ 86 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRT--------------------------LVLDHSDYRFNSVS 86 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECC--------------------------CCCSCCCCEEEEEE
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECC--------------------------CCCCCCCccEEEEE
Confidence 3478899998877777754 56755 33344443322100 00011233577888
Q ss_pred EecCCCEEEEEecCCeEEEEecCCCce-eccC---CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCC
Q 040987 361 FSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLP---RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
|.+ + .++.++..+.|+. ..+.++. .... .++..+..+.+.+++..++++ .++.+.. ..+.++.-.......
T Consensus 87 ~~~-~-~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~ 161 (327)
T 2xbg_A 87 FQG-N-EGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEA 161 (327)
T ss_dssp EET-T-EEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSC
T ss_pred ecC-C-eEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCC
Confidence 875 3 3444556675544 3333332 2111 233457778877777666555 4554432 222243333332211
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
...+..+++.+++.+++++...+..+-.|- .+..-..+.. .. ...+..+++.++++.++.+
T Consensus 162 ---------~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~---~~------~~~~~~~~~~~~g~~~~~~ 222 (327)
T 2xbg_A 162 ---------IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNR---TT------SRRLHNMGFTPDGRLWMIV 222 (327)
T ss_dssp ---------CCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEEC---CS------SSCEEEEEECTTSCEEEEE
T ss_pred ---------CcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCC---CC------CCccceeEECCCCCEEEEe
Confidence 146788999999887776644433333332 1222222211 11 3457888999999877665
Q ss_pred eeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCC
Q 040987 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 517 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
.++.+++.+.+.++.-..+.. ....+ ...+.++++.+++..++.+. ++.+ .+..+.++
T Consensus 223 ----------~~G~~~~s~~D~G~tW~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~-------- 280 (327)
T 2xbg_A 223 ----------NGGKIAFSDPDNSENWGELLS-PLRRN-SVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ-------- 280 (327)
T ss_dssp ----------TTTEEEEEETTEEEEECCCBC-TTSSC-CSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS--------
T ss_pred ----------CCceEEEecCCCCCeeEeccC-CcccC-CcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc--------
Confidence 446666653221211111110 00012 33588999998877766654 6666 34444443
Q ss_pred ceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
.|............+.++.|.++++++++|.+|.|.-++-
T Consensus 281 tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 281 TWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp SCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred ccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 3333221112235678899987887777777998877653
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.54 E-value=0.00017 Score=72.26 Aligned_cols=245 Identities=11% Similarity=-0.022 Sum_probs=148.6
Q ss_pred EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCC
Q 040987 399 YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLD 477 (762)
Q Consensus 399 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~ 477 (762)
|.+..++ .+|+.+ ....|+..++........+... ..+..++|++....|... ...+.|+.+++..
T Consensus 38 C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~~~~~~-----------~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g 104 (349)
T 3v64_C 38 CKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNL-----------ENAIALDFHHRRELVFWSDVTLDRILRANLNG 104 (349)
T ss_dssp EEESSSC-CEEEEE-CBSCEEEECTTSCCEEEEECSC-----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ccccccC-ceeEee-cccceEEEeCCCCeeEEeecCC-----------CceEEEEEeccccEEEEEeccCCceEEEecCC
Confidence 3344443 334433 4456888888765544444332 356889999866655544 4668899999876
Q ss_pred CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCc
Q 040987 478 DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAG 557 (762)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~ 557 (762)
..... +... . ......+++.+.+..|..+.. ..+.|.+.+++.......+ ... ...
T Consensus 105 ~~~~~-~~~~-~--------~~~p~glavd~~~g~ly~~d~--------~~~~I~~~~~dG~~~~~l~-----~~~-l~~ 160 (349)
T 3v64_C 105 SNVEE-VVST-G--------LESPGGLAVDWVHDKLYWTDS--------GTSRIEVANLDGAHRKVLL-----WQS-LEK 160 (349)
T ss_dssp CSCEE-EECS-S--------CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCEEEE-----CTT-CSC
T ss_pred CCceE-EEeC-C--------CCCccEEEEecCCCeEEEEcC--------CCCeEEEEcCCCCceEEEE-----eCC-CCC
Confidence 54322 2111 0 223568899987666655542 5678999998765432222 222 346
Q ss_pred eEEEEEcCCCCeEEEEe-CC-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEE
Q 040987 558 ISAVAFHPNRRAAVSSS-YG-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITL 633 (762)
Q Consensus 558 v~~~~~spd~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~i 633 (762)
...++++|.+..|+... .. +.|..+++......... .........++++|++..|..+. .+.|..
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----------~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-----------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE-----------ECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 78999999666555544 34 67888887654332221 11234568999999888777775 789999
Q ss_pred EeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 634 WDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 634 wd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
+|++.......+.........+++. ++ .|+.+.... +.|...+..+|+....+.....
T Consensus 230 ~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~-~~V~~~~~~~G~~~~~i~~~~~ 287 (349)
T 3v64_C 230 ANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHT-KSINSANKFTGKNQEIIRNKLH 287 (349)
T ss_dssp EETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTT-TEEEEEETTTCCSCEEEECSCS
T ss_pred EeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCC-CeEEEEEccCCCccEEeccCCC
Confidence 9988654333343333445678883 33 555554433 2488888778877766654443
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.53 E-value=0.00016 Score=72.60 Aligned_cols=254 Identities=8% Similarity=-0.099 Sum_probs=152.5
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEcc
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~ 434 (762)
..+.+..+++ +|+.+. ...|+..++.......+.........++|++....|+.+. ..+.|..+++........+..
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 4455545543 444443 3568888888766655444455688999998776666654 467899999886554333322
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
.. .....+++.+.+..| ++-...+.|.+.++..... ..+.. .. ......++++|.+..|
T Consensus 114 ~~----------~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~-~~--------l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 114 GL----------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLW-QS--------LEKPRAIALHPMEGTI 173 (349)
T ss_dssp SC----------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-TT--------CSCEEEEEEETTTTEE
T ss_pred CC----------CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEe-CC--------CCCcceEEEecCcCeE
Confidence 11 345789999855544 4545667899999865432 22211 11 2347899999977777
Q ss_pred EEEeeeccccCCCce-eEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccc
Q 040987 514 STVDIKLAEEGIGSL-VCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQK 591 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~ 591 (762)
..+.. .. +.|..++++........ ... ....+.++++|++..|..+. ..+.|..+|+.......
T Consensus 174 y~td~--------~~~~~I~r~~~dG~~~~~~~-----~~~-~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~ 239 (349)
T 3v64_C 174 YWTDW--------GNTPRIEASSMDGSGRRIIA-----DTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA 239 (349)
T ss_dssp EEEEC--------SSSCEEEEEETTSCSCEESC-----CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEecc--------CCCCEEEEEeCCCCCcEEEE-----ECC-CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEE
Confidence 66653 33 78888888765432211 112 34568999998776666554 45679999987543222
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
.. .........+++ .++.+..+-. .+.|..++..+|+.+..+.........+++
T Consensus 240 ~~-----------~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 240 VI-----------SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EE-----------CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EE-----------eCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 21 112345567777 3444444433 788988887677655555433233334433
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.52 E-value=0.0001 Score=75.10 Aligned_cols=245 Identities=8% Similarity=-0.102 Sum_probs=150.3
Q ss_pred EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
+|+.+. ...|+..++.......+.........++|++.+..|+.+. ..+.|..+++........+....
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--------- 158 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--------- 158 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC---------
T ss_pred eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC---------
Confidence 444443 3578888888776655545556688999998766666554 46789999988665444333221
Q ss_pred cCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 446 KGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.....+++++.+..| ++-...+.|.+.++..... ..+.. .. ......++++|.+..|..+..
T Consensus 159 -~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~-~~--------l~~P~giavdp~~g~ly~td~------ 221 (386)
T 3v65_B 159 -ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLW-QS--------LEKPRAIALHPMEGTIYWTDW------ 221 (386)
T ss_dssp -SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEEC-SS--------CSCEEEEEEETTTTEEEEEEC------
T ss_pred -CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeec-CC--------CCCCcEEEEEcCCCeEEEecc------
Confidence 345789999865544 4445567888888864432 22211 11 245789999998877777653
Q ss_pred CCce-eEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCceeeee
Q 040987 525 IGSL-VCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 525 ~~~d-~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
.. +.|..++++........ ... ....+.++++|++..|+.+. ..+.|..+|+.........
T Consensus 222 --~~~~~I~r~~~dG~~~~~~~-----~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~--------- 284 (386)
T 3v65_B 222 --GNTPRIEASSMDGSGRRIIA-----DTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI--------- 284 (386)
T ss_dssp --SSSCEEEEEETTSCSCEEEE-----CSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE---------
T ss_pred --CCCCEEEEEeCCCCCcEEEE-----ECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE---------
Confidence 33 68888888765433222 112 33568999998766665554 4567989988654322221
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
.........+++ .++.++.+-. .+.|..++..+|+.+..+.........+++.
T Consensus 285 --~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 285 --SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp --CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred --ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence 112345567887 3444444444 7899999977776666665433334445443
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.51 E-value=2.8e-05 Score=87.15 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=76.8
Q ss_pred CeEEEEEc-CCCcEEEEeec-C----CeEEEEeccCC-ceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 283 KLTVLAFH-PTQRIVAAGDV-T----GRILIWRGFGD-RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 283 ~v~~~~~s-p~~~~l~~~~~-d----g~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+. ..+.. .
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----------------------------~~~~~---~ 222 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----------------------------DKVSG---T 222 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----------------------------CCEEE---E
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----------------------------ccccC---c
Confidence 57889999 99999886543 2 25999999776 4221 11111 1
Q ss_pred eeEEEEecCCCEEEEEecC-----CeEEEEecCCCcee--cc--CCCCCCeEEEEeCCCCCeEEEEec---CCcEEEEEc
Q 040987 356 VSVLIFSSDGAYLYSGGKE-----GVLVVWQLDTGKKK--FL--PRIGSPLLYFTESPDPSLSSISCA---DNQVHLLKM 423 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~--~~--~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~ 423 (762)
...++|+|||+.|+....+ ..|+++++.++... .+ .........+.|||||++|+.... ...|+++|+
T Consensus 223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 3468899999988877765 36888998876421 11 122334677899999999887663 346888888
Q ss_pred CCc
Q 040987 424 PSM 426 (762)
Q Consensus 424 ~~~ 426 (762)
.++
T Consensus 303 ~~~ 305 (751)
T 2xe4_A 303 RKG 305 (751)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.50 E-value=0.00032 Score=69.27 Aligned_cols=236 Identities=8% Similarity=-0.093 Sum_probs=141.4
Q ss_pred EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCC----ceEEEEEccCCCCCCC
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPS----MEIIRSISGIKLPCPL 441 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~----~~~~~~~~~~~~~~~~ 441 (762)
+|+.+.. ..|+..|+.+.+...+.........++|++++..|+.+.. .+.|..+++.. ......+....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~----- 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI----- 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-----
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC-----
Confidence 3444433 5688999988766554444567889999987766666554 57899999875 22222222111
Q ss_pred CCcccCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 442 PEEYKGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
.....+++++.+..| ++-...+.|.++++.... ...+... . ......++++|.+..|..+...
T Consensus 77 -----~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~-~--------~~~P~~iavdp~~g~ly~~d~~- 140 (316)
T 1ijq_A 77 -----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-N--------GSKPRAIVVDPVHGFMYWTDWG- 140 (316)
T ss_dssp -----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEEC-T--------TCCEEEEEEETTTTEEEEEECS-
T ss_pred -----CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEEC-C--------CCCcceEEeCCCCCEEEEEccC-
Confidence 345789999755544 444567889999986433 2222211 1 2347899999977766666521
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCcee
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
..+.|..++++.... ..+. ... -...+.++++|++..|+.+. ..+.|..+|+..........
T Consensus 141 ------~~~~I~~~~~dG~~~-~~~~----~~~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~----- 203 (316)
T 1ijq_A 141 ------TPAKIKKGGLNGVDI-YSLV----TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE----- 203 (316)
T ss_dssp ------SSCEEEEEETTSCCE-EEEE----CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-----
T ss_pred ------CCCeEEEEcCCCCCe-EEEE----ECC-CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee-----
Confidence 226888888765432 2221 122 34678999999877666554 45689999987533221110
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~ 646 (762)
..........+++. ++.++.+-. .+.|..++..+|+.+..+.
T Consensus 204 ----~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 204 ----DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp ----CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ----cCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 11112345677774 344444444 7899999988776655554
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=3.3e-05 Score=79.98 Aligned_cols=253 Identities=8% Similarity=-0.030 Sum_probs=142.8
Q ss_pred ceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC-C----cEEEEEcCCceE
Q 040987 355 EVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD-N----QVHLLKMPSMEI 428 (762)
Q Consensus 355 ~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~----~i~i~d~~~~~~ 428 (762)
....++++| ++..|+.+...+.|+.+|++++....+.........++++++|+.|+++... + .+.+++.. +..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 457889998 4566777766588999999887765555556678899999999977766542 1 23334432 211
Q ss_pred E--EEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 429 I--RSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 429 ~--~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
. ..+... .....++++| ++.++++-..++.|+.++...+... .+..... ......++
T Consensus 217 ~~~~~l~~~-----------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~--------~~~P~gia 276 (430)
T 3tc9_A 217 KVITELTKG-----------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQD--------SGWEFHIQ 276 (430)
T ss_dssp CSEEEEEEC-----------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEECSS--------SSCCEEEE
T ss_pred eeeeeeccC-----------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEEcCC--------CCcceeEE
Confidence 1 222211 3457889999 6776666667789999998765432 1111111 23467899
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc----eeEEEEE-eecCCC--------CCceE-EEEEc-------
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK----EFTLSTI-VYEPHR--------DAGIS-AVAFH------- 564 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~-~~~~h~--------~~~v~-~~~~s------- 564 (762)
|+|+|++|..+.. ..+.|..++...... ...+... -..+.. -..-. .++..
T Consensus 277 ~~pdG~~lyv~d~--------~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~ 348 (430)
T 3tc9_A 277 FHPSGNYAYIVVV--------NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS 348 (430)
T ss_dssp ECTTSSEEEEEET--------TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred EcCCCCEEEEEEC--------CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence 9999997666653 567899988774311 1111110 000000 01122 44543
Q ss_pred -CCCCeEEEEeCCCcEEEEEcccccccccccC-----Cceeee-eecccCCCCeEEEEEcCCCcEEEEE-c-CCeEEEEe
Q 040987 565 -PNRRAAVSSSYGGDFKVWICNDELQQKDLQS-----SGWSCH-AVGSYKKKAMTAAAFSADGSVLAVA-A-ETVITLWD 635 (762)
Q Consensus 565 -pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd 635 (762)
++|.++++-...+.|+.++. ++........ ..+..- ......-.....++++|++..|.++ . +..|+.++
T Consensus 349 D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 349 SDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp SCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 34555555555677888773 3332211100 000000 0000112357899999964455555 3 78888877
Q ss_pred CC
Q 040987 636 PD 637 (762)
Q Consensus 636 ~~ 637 (762)
++
T Consensus 428 ~e 429 (430)
T 3tc9_A 428 YE 429 (430)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.47 E-value=5.4e-05 Score=78.30 Aligned_cols=254 Identities=9% Similarity=-0.018 Sum_probs=144.6
Q ss_pred ceeEEEEecC--CCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC-----cEEEEEcCCce
Q 040987 355 EVSVLIFSSD--GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN-----QVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~--g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~i~d~~~~~ 427 (762)
....++|+|+ +..|+.+...+.|+.+|..++....+.........++++++|+ |+++...+ .+..++...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 3568999984 4456666555889999998888766665566789999999999 55554422 23333322111
Q ss_pred E-EEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 428 I-IRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 428 ~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
. ...+... .....++++| ++.++++-..++.|+.+|..++.....+..... ......++
T Consensus 219 ~~~~~~~~~-----------~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~--------~~~~~~ia 279 (433)
T 4hw6_A 219 TERLSLCNA-----------RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT--------KGSNFHIV 279 (433)
T ss_dssp CCEEEEEEC-----------SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC--------CSSCEEEE
T ss_pred ecccccccc-----------CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC--------CCCcccEE
Confidence 0 0111111 3456789999 666665656778899999886654233221111 11224699
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecC--CCc--eeEEEEE-eecCC--------CCCceEEEEE---------
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT--QNK--EFTLSTI-VYEPH--------RDAGISAVAF--------- 563 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~--~~~--~~~~~~~-~~~~h--------~~~~v~~~~~--------- 563 (762)
|+|+|++|..+.. ..+.|+.++... +.. ...+... -..+. .-..-..+++
T Consensus 280 ~dpdG~~LYvad~--------~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 280 WHPTGDWAYIIYN--------GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp ECTTSSEEEEEET--------TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred EeCCCCEEEEEeC--------CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 9999997766653 567899988763 211 1111110 00000 0123567898
Q ss_pred cCCCCeEEEEeCCCcEEEEEcccccccccccCC-----ceeee-eecccCCCCeEEEEEc-CCCcEEEEEc-CCeEEEEe
Q 040987 564 HPNRRAAVSSSYGGDFKVWICNDELQQKDLQSS-----GWSCH-AVGSYKKKAMTAAAFS-ADGSVLAVAA-ETVITLWD 635 (762)
Q Consensus 564 spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~i~~~~~s-~dg~~la~~~-d~~i~iwd 635 (762)
.++|.++++-...+.|+.++. ++......... .+..- ......-.....++++ ++|.++++=. +++|+.++
T Consensus 352 d~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 352 EDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp SCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 777777777667788988885 33322211000 00000 0000112346789999 5555444434 78888877
Q ss_pred CC
Q 040987 636 PD 637 (762)
Q Consensus 636 ~~ 637 (762)
++
T Consensus 431 ~e 432 (433)
T 4hw6_A 431 PE 432 (433)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 279
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.46 E-value=0.0058 Score=71.01 Aligned_cols=443 Identities=12% Similarity=0.091 Sum_probs=224.5
Q ss_pred ceeecCCCEEEEEe----------CCEEEEEEcccceEEeeecCCc-cceeEEEEeCCCCcccceeeeEEeeecCCeEEE
Q 040987 79 PAFSNDVKRLLVCT----------SNTVSIFSTSTGLQISSLEGHK-APVTTVIVVPASTPATKILSYCWTASLDGTIKY 147 (762)
Q Consensus 79 ~~~s~dg~~la~~~----------~~~i~iwd~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~v 147 (762)
..|..+...|+++. .+.|++.+...+..+....... ..|...+... . +++.++ .+.+.+
T Consensus 467 ~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~-~--------~vvva~-g~~l~~ 536 (1158)
T 3ei3_A 467 MGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNS-S--------QVVVAV-GRALYY 536 (1158)
T ss_dssp TTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS-S--------EEEEEE-TTEEEE
T ss_pred ccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC-C--------EEEEEE-CCEEEE
Confidence 34555555555554 3467777766555666665433 3577666443 2 233333 578888
Q ss_pred EeCCCcceE--EEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCc-cccEEEEecCCc
Q 040987 148 WDFSVPELL--KTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTM-NGRICKCNLTES 224 (762)
Q Consensus 148 Wd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d~~i~iwd~~~~ 224 (762)
+++.+++.. ...+....+.++.+.... ....+.. +. +.|+. |++++++++.+.
T Consensus 537 fel~~~~L~~~~~~~l~~evscl~i~~~~-----~~~~~s~-~~------------------aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 537 LQIHPQELRQISHTEMEHEVACLDITPLG-----DSNGLSP-LC------------------AIGLWTDISARILKLPSF 592 (1158)
T ss_dssp EEEETTEEEEEEEEECSSCEEEEECCCCS-----SSTTCCS-EE------------------EEEETTTTEEEEEETTTC
T ss_pred EEeeCCceeeecccCCCCceEEEEeecCC-----CCccccc-EE------------------EEEECCCCEEEEEECCCC
Confidence 888766432 223333467776552210 0111111 11 44565 999999999876
Q ss_pred cccceeeeccCCCceEEEECC--CCCEEEEE-eCCeEEEEEcc--CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 225 RLAGGVTLAEMKEPQVITISS--SGKYFGIR-KQRKLLIWKVP--DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~sp--dg~~la~~-~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
+.+..........+.++.+.. ...+|.++ .||.+.-+.++ +++.. ..+....+ ..++.-..+...+..-+.+
T Consensus 593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~--d~r~~~LG-~~pv~L~~~~~~~~~~V~a 669 (1158)
T 3ei3_A 593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS--DRKKVTLG-TQPTVLRTFRSLSTTNVFA 669 (1158)
T ss_dssp CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE--EEEEEECC-SSCCEEEEEESSSCEEEEE
T ss_pred CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc--cceeEEcC-CCceEEEEEeeCCceeEEE
Confidence 666333333333444554432 23455555 68887666554 33332 22222333 2345444454444322222
Q ss_pred ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce-eEEEEecC--CCEEEEEecCCe
Q 040987 300 DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV-SVLIFSSD--GAYLYSGGKEGV 376 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~--g~~l~s~~~dg~ 376 (762)
..+.-..++.-.+.-.+. .+. ...+ ....|+.. ..-++..+ ++.
T Consensus 670 ~s~rp~liy~~~~~l~~s------------------------------~l~--~~~v~~~~~F~se~~~~g~v~~~-~~~ 716 (1158)
T 3ei3_A 670 CSDRPTVIYSSNHKLVFS------------------------------NVN--LKEVNYMCPLNSDGYPDSLALAN-NST 716 (1158)
T ss_dssp ESSSCEEEEESSSSEEEE------------------------------EBS--SSCCCEEEEECCSSSTTEEEEEC-SSC
T ss_pred ECCCCEEEEEcCCceEEe------------------------------ccC--hHHhceEeccCcccCCCcEEEEc-CCc
Confidence 234434444322110000 000 0112 22334321 12344333 345
Q ss_pred EEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecC---------------------------------------
Q 040987 377 LVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCAD--------------------------------------- 415 (762)
Q Consensus 377 i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------------------------------- 415 (762)
+++..++..+. ......+..+..++++|+.+.++++..+
T Consensus 717 LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1158)
T 3ei3_A 717 LTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPH 796 (1158)
T ss_dssp EEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-------
T ss_pred eEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCc
Confidence 77776654322 2233345567777887776665544321
Q ss_pred ----------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE---eCC-CCEEEEee----------cCceEE
Q 040987 416 ----------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF---NHD-GGLVALRA----------ENYCIH 471 (762)
Q Consensus 416 ----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~-~~~l~~~~----------~dg~i~ 471 (762)
..++++|..+.+.+..+.-... ..+.+++. ..+ ..++++|+ ..|.|.
T Consensus 797 ~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n---------E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~ 867 (1158)
T 3ei3_A 797 ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN---------EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV 867 (1158)
T ss_dssp ---CCCEEEEEEEEEEETTTCCEEEEEECCTT---------EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred hhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC---------cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence 1355666666555544432221 23444443 222 46788876 348899
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
+|++..+ .+..+....- .+.+++++-- +|++++..+ .++++|++...+... ....
T Consensus 868 vf~v~~~-kL~lv~~~~v--------~g~v~al~~~-~g~Lla~ig-----------~~l~vy~l~~~~~L~-~~~~--- 922 (1158)
T 3ei3_A 868 VFQYSDG-KLQTVAEKEV--------KGAVYSMVEF-NGKLLASIN-----------STVRLYEWTTEKELR-TECN--- 922 (1158)
T ss_dssp EEEEETT-EEEEEEEEEE--------SSCEEEEEEE-TTEEEEEET-----------TEEEEEEECTTSCEE-EEEE---
T ss_pred EEEEECC-EEEEEEEEEc--------CCcCEEEeee-CCEEEEEcC-----------CEEEEEECCCCceEE-EEee---
Confidence 9999743 2222221111 4567776643 455555443 689999998765433 2211
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc--cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE--LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E 628 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d 628 (762)
+ -..|..+.....+++++.|..-..+.++..+.. +.... .......+++++.|-.++ .++.+. +
T Consensus 923 -~-~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~----------a~D~~~~~vta~~~ld~~-t~l~aD~~ 989 (1158)
T 3ei3_A 923 -H-YNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI----------ARDFNPNWMSAVEILDDD-NFLGAENA 989 (1158)
T ss_dssp -E-CCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE----------EECCSCBCEEEEEEEETT-EEEEEETT
T ss_pred -c-cccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE----------EeecccccEEEEEEEccC-cEEEEcCC
Confidence 1 112332233335778888887777777665432 11111 123456788999987665 555566 8
Q ss_pred CeEEEEeCCC
Q 040987 629 TVITLWDPDR 638 (762)
Q Consensus 629 ~~i~iwd~~~ 638 (762)
|.+.+.....
T Consensus 990 gNl~vl~~~~ 999 (1158)
T 3ei3_A 990 FNLFVCQKDS 999 (1158)
T ss_dssp SEEEEEEECT
T ss_pred CcEEEEecCC
Confidence 9999886543
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.46 E-value=9.8e-05 Score=75.29 Aligned_cols=237 Identities=12% Similarity=-0.014 Sum_probs=145.6
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCceeeEEe
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
+|+.+ ....|+.+++........+... ..+..++|++.+..|... ...+.|+.+++...... .+..
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~~-----------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~ 155 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLNNL-----------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVS 155 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEECSC-----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEEC
T ss_pred eeEee-cCccceeeccCCCcEEEEecCC-----------CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEEe
Confidence 34433 4567888888766554444432 457889999865555544 46688999998765422 2211
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
. . ......+++.+.+..|..... ..+.|.+.+++.......+ ... ......++++|.
T Consensus 156 ~-~--------~~~p~glavd~~~g~lY~~d~--------~~~~I~~~~~dg~~~~~l~-----~~~-l~~P~giavdp~ 212 (386)
T 3v65_B 156 T-G--------LESPGGLAVDWVHDKLYWTDS--------GTSRIEVANLDGAHRKVLL-----WQS-LEKPRAIALHPM 212 (386)
T ss_dssp S-S--------CSCCCCEEEETTTTEEEEEET--------TTTEEEECBTTSCSCEEEE-----CSS-CSCEEEEEEETT
T ss_pred C-C--------CCCccEEEEEeCCCeEEEEcC--------CCCeEEEEeCCCCceEEee-----cCC-CCCCcEEEEEcC
Confidence 1 0 123567899987666665542 5568888888755432222 222 346789999997
Q ss_pred CCeEEEEeC-C-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEE
Q 040987 567 RRAAVSSSY-G-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLV 642 (762)
Q Consensus 567 ~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~ 642 (762)
+..|+.+.. . +.|..+++......... .........++|+|++..|..+. .+.|..+|++.....
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~ 281 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDGSGRRIIA-----------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 281 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCSCEEEE-----------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE
T ss_pred CCeEEEeccCCCCEEEEEeCCCCCcEEEE-----------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE
Confidence 666655543 3 57888887654332221 11234568999999888777775 789999998865443
Q ss_pred EEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 643 AVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 643 ~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
..+.........+++. .+ .|+.+...+ +.|..++..+|+....+.....
T Consensus 282 ~~~~~~~~~P~giav~-~~-~ly~td~~~-~~V~~~~~~~G~~~~~i~~~~~ 330 (386)
T 3v65_B 282 AVISQGLPHPFAITVF-ED-SLYWTDWHT-KSINSANKFTGKNQEIIRNKLH 330 (386)
T ss_dssp EEECSSCSSEEEEEEE-TT-EEEEEETTT-TEEEEEETTTCCSCEEEECSCS
T ss_pred EEEECCCCCceEEEEE-CC-EEEEeeCCC-CeEEEEECCCCcceEEEccCCC
Confidence 3343333446778883 33 444444333 3499999888887776665443
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.44 E-value=3.5e-05 Score=86.36 Aligned_cols=248 Identities=9% Similarity=-0.008 Sum_probs=135.0
Q ss_pred CeEEEEeC-CCCCeEEEEecC-C----cEEEEEcCCc-eEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 396 PLLYFTES-PDPSLSSISCAD-N----QVHLLKMPSM-EIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 396 ~v~~~~~s-~~~~~l~~~~~d-~----~i~i~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.+...+|| |||++|+.+... | .|+++|+.++ +.+.. +. .....++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-------------~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-------------GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-------------EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-------------CceeeEEEecCCCEEEEEEEC
Confidence 57789999 999998876542 2 4999999988 53210 11 223578999999988887765
Q ss_pred -----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-
Q 040987 468 -----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK- 541 (762)
Q Consensus 468 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~- 541 (762)
..|+++++.++.....+...... ......+.|+|||++|+..... .....|.++|+.++..
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~-------~~~~~~~~~SpDg~~l~~~~~~------~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHN-------PLFSAFMYKAADTNTLCIGSQS------PETAEVHLLDLRKGNAH 308 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCC-------TTCEEEEEECTTSSEEEEEEEC------SSCEEEEEEESSSCTTC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCC-------CceEEEEEECCCCCEEEEEecC------CCCceEEEEECCCCCCC
Confidence 36888888766432222211110 2235678999999999887621 1356889999987632
Q ss_pred e--eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC--C--cEEEEEcccc-cccc-cccCCceeeeeecccCCCCeEE
Q 040987 542 E--FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG--G--DFKVWICNDE-LQQK-DLQSSGWSCHAVGSYKKKAMTA 613 (762)
Q Consensus 542 ~--~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d--g--~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~~ 613 (762)
. ..+ .... .....++.|+.++.+++....+ + .|..+|+.++ .... .+. ......+..
T Consensus 309 ~~~~~l----~~~~-~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~----------~~~~~~l~~ 373 (751)
T 2xe4_A 309 NTLEIV----RPRE-KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD----------HSEDVFMES 373 (751)
T ss_dssp CCEEES----SCCC-TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC----------CCSSEEEEE
T ss_pred ceeEEe----ecCC-CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC----------CCCCcEEEE
Confidence 2 222 1222 3445556555444444444443 3 4566666542 1111 111 111123445
Q ss_pred EEEcCCCcEEEE-Ec-CCe--EEEEeC-------CCCeEEEEecccc-CceeEEEE----eCCCCE-EEEEEc-CCCCeE
Q 040987 614 AAFSADGSVLAV-AA-ETV--ITLWDP-------DRNVLVAVIGETL-TPIMNMSF----VGSSEY-LVATSW-GSKPQL 675 (762)
Q Consensus 614 ~~~s~dg~~la~-~~-d~~--i~iwd~-------~~~~~~~~l~~~~-~~v~~~~~----s~dg~~-l~s~~~-d~~~~v 675 (762)
+.+ ++..|+. .. ++. |+++++ .+++....+.-.. ..+..+.+ ++++.. +++.+. .....+
T Consensus 374 ~~~--~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~ 451 (751)
T 2xe4_A 374 IAV--RSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTW 451 (751)
T ss_dssp EEE--CSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEE
T ss_pred EEE--ECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEE
Confidence 555 4555544 44 664 566675 4444123332111 11233322 446554 444333 222348
Q ss_pred EEEECCCCcee
Q 040987 676 SVWNMSKLSIS 686 (762)
Q Consensus 676 ~vwd~~~~~~~ 686 (762)
..+|+.+++..
T Consensus 452 ~~~d~~~~~~~ 462 (751)
T 2xe4_A 452 FDVSPQDHSRT 462 (751)
T ss_dssp EEECTTTCCEE
T ss_pred EEEECCCCcEE
Confidence 88888887643
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.43 E-value=0.00044 Score=68.29 Aligned_cols=236 Identities=11% Similarity=-0.039 Sum_probs=141.6
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCC---Cceee
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDD---RGISE 483 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~---~~~~~ 483 (762)
+|+.+ ....|+..|+.+.+....+... ..+..++|++++..|..+ ..++.|..+++... .....
T Consensus 3 ~ll~~-~~~~I~~i~~~~~~~~~~~~~~-----------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~ 70 (316)
T 1ijq_A 3 YLFFT-NRHEVRKMTLDRSEYTSLIPNL-----------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 70 (316)
T ss_dssp EEEEE-CBSSEEEEETTSCCCEEEECSC-----------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred EEEEE-CCCeEEEEECCCcceEehhcCC-----------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE
Confidence 34444 4567999999887655554432 456889999876555544 45688999998752 22222
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
+.. .. ......+++++.+..|..+.. ..+.|.++++...... .+. ... ......+++
T Consensus 71 ~~~--~~-------~~~p~glavd~~~~~ly~~d~--------~~~~I~~~~~~g~~~~-~~~----~~~-~~~P~~iav 127 (316)
T 1ijq_A 71 VIS--RD-------IQAPDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRK-TLF----REN-GSKPRAIVV 127 (316)
T ss_dssp EEC--SS-------CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSSSEE-EEE----ECT-TCCEEEEEE
T ss_pred EEe--CC-------CCCcCEEEEeecCCeEEEEEC--------CCCEEEEEeCCCCceE-EEE----ECC-CCCcceEEe
Confidence 111 00 123578899986666655542 5678999998754332 221 122 346789999
Q ss_pred cCCCCeEEEEeCC--CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCC
Q 040987 564 HPNRRAAVSSSYG--GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRN 639 (762)
Q Consensus 564 spd~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~ 639 (762)
+|.+..|+.+... +.|...++......... ...-.....+++++++..|..+. .+.|..+|++..
T Consensus 128 dp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~-----------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 128 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE-----------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 9976666555443 67888887543322111 11234678999999888877775 689999999854
Q ss_pred eEEEEecc--ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 640 VLVAVIGE--TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 640 ~~~~~l~~--~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
........ .......+++.. + .|+.+...+ ++|..++..+|+....+...
T Consensus 197 ~~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~-~~V~~~~~~~g~~~~~i~~~ 248 (316)
T 1ijq_A 197 NRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIIN-EAIFSANRLTGSDVNLLAEN 248 (316)
T ss_dssp SCEEEEECTTTTSSEEEEEEET-T-EEEEEETTT-TEEEEEETTTCCCCEEEECS
T ss_pred ceEEEeecCCccCCcEEEEEEC-C-EEEEEECCC-CeEEEEeCCCCcceEEEecC
Confidence 32222221 223356777753 4 455444333 35999998888876665443
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.42 E-value=0.00054 Score=64.10 Aligned_cols=206 Identities=8% Similarity=0.043 Sum_probs=129.6
Q ss_pred CceeeEEEeCCCCEEE-EeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 447 GLCRDIAFNHDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
..+..++++|++..|+ +...++.|..+|.. ++....+.... ......+++.+++.++++..
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---------~~D~EGIa~~~~g~~~vs~E-------- 88 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---------VKDLETIEYIGDNQFVISDE-------- 88 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---------CSSEEEEEECSTTEEEEEET--------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---------CCChHHeEEeCCCEEEEEEC--------
Confidence 5689999999876555 46677899999997 76666654321 23477889999988766654
Q ss_pred CceeEEEEEEecCCCceeEEEEEee----cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc---cccccccCCce
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVY----EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE---LQQKDLQSSGW 598 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~----~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~ 598 (762)
.++.+.++++.............+ ... ......++|+|+++.|.++.......+|.+..- ..........+
T Consensus 89 -~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~-N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~ 166 (255)
T 3qqz_A 89 -RDYAIYVISLTPNSEVKILKKIKIPLQESPT-NCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166 (255)
T ss_dssp -TTTEEEEEEECTTCCEEEEEEEECCCSSCCC-SSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred -CCCcEEEEEcCCCCeeeeeeeeccccccccc-cCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence 667899999877654332222211 123 556799999999987777776656667666521 00010000000
Q ss_pred eeeeecccCCCCeEEEEEcCCCcE-EEEEc-CCeEEEEeCCCCeEEEEecccc---------CceeEEEEeCCCCEEEEE
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSV-LAVAA-ETVITLWDPDRNVLVAVIGETL---------TPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~-la~~~-d~~i~iwd~~~~~~~~~l~~~~---------~~v~~~~~s~dg~~l~s~ 667 (762)
........+.++++.|.... ++... ...+.++|.+ |+.+..+.-.. ..-..++|.++|++.++
T Consensus 167 ----~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv- 240 (255)
T 3qqz_A 167 ----QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV- 240 (255)
T ss_dssp ----HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-
T ss_pred ----ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-
Confidence 01122346789999996554 44454 7899999987 44555442211 24678999999984444
Q ss_pred EcCCCCeEEEEEC
Q 040987 668 SWGSKPQLSVWNM 680 (762)
Q Consensus 668 ~~d~~~~v~vwd~ 680 (762)
++-+. ++.+.-
T Consensus 241 sE~n~--~y~f~~ 251 (255)
T 3qqz_A 241 SEPNR--FYRFTP 251 (255)
T ss_dssp ETTTE--EEEEEC
T ss_pred cCCce--EEEEEe
Confidence 66554 666643
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.40 E-value=0.00025 Score=66.39 Aligned_cols=227 Identities=13% Similarity=0.041 Sum_probs=131.6
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEE-EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSI-SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.+.+....+..++++|++..|++ ...++.|..+|.. ++.++.+.-.. ......+++.+++.++++.-.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---------~~D~EGIa~~~~g~~~vs~E~~ 90 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---------VKDLETIEYIGDNQFVISDERD 90 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---------CSSEEEEEECSTTEEEEEETTT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---------CCChHHeEEeCCCEEEEEECCC
Confidence 35566678999999998765554 6667889999998 88887764211 0356789999998876765567
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLS 546 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~ 546 (762)
+.+.++++.....+........... ..........++++|+++.|.++... ....|..|+-. .......+.
T Consensus 91 ~~l~~~~v~~~~~i~~~~~~~~~~~-~~~~N~g~EGLA~d~~~~~L~va~E~-------~p~~i~~~~g~~~~~~l~i~~ 162 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKKIKIPLQ-ESPTNCGFEGLAYSRQDHTFWFFKEK-------NPIEVYKVNGLLSSNELHISK 162 (255)
T ss_dssp TEEEEEEECTTCCEEEEEEEECCCS-SCCCSSCCEEEEEETTTTEEEEEEES-------SSEEEEEEESTTCSSCCEEEE
T ss_pred CcEEEEEcCCCCeeeeeeeeccccc-cccccCCcceEEEeCCCCEEEEEECc-------CCceEEEEcccccCCceeeec
Confidence 8899999876654322222211110 01114557999999999887777631 11244445410 111111111
Q ss_pred E--EeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEE
Q 040987 547 T--IVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 547 ~--~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
. .....+ ...+.+++++|... +++.....+.+.++|.... .+..+.... ........-.....|+|.++|++.
T Consensus 163 ~~~~~~~~~-~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~--g~~~l~~~~~qpEGia~d~~G~ly 238 (255)
T 3qqz_A 163 DKALQRQFT-LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTK--GSRGLSHNIKQAEGVAMDASGNIY 238 (255)
T ss_dssp CHHHHHTCC-SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECST--TGGGCSSCCCSEEEEEECTTCCEE
T ss_pred chhhccccc-cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCC--ccCCcccccCCCCeeEECCCCCEE
Confidence 0 000112 44678999999654 5555555677888887644 332221000 000000012356789999999876
Q ss_pred EEEcCCeEEEEeCC
Q 040987 624 AVAAETVITLWDPD 637 (762)
Q Consensus 624 a~~~d~~i~iwd~~ 637 (762)
+++..+.++++.-.
T Consensus 239 IvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 239 IVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTEEEEEEC-
T ss_pred EEcCCceEEEEEec
Confidence 66555667666543
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.39 E-value=0.0015 Score=64.78 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=149.6
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccC--CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLP--RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
...+.++.|.+++..++ ++..+.|. ...+.++. .... .....+..+.+.+ +..++ ++..+.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 34688899987776666 45567653 33344432 2111 1234678888876 44444 445564433 233344
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.-..+.... ...+.+..+.+.++++.++.+ .++.|.. ....++.-.... ... ...+..+++.
T Consensus 110 tW~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~---~~~------~~~~~~~~~~ 171 (327)
T 2xbg_A 110 SWSQIPLDP-------KLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV---QEA------IGVMRNLNRS 171 (327)
T ss_dssp SCEECCCCT-------TCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE---CSC------CCCEEEEEEC
T ss_pred CceECcccc-------CCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee---cCC------CcceEEEEEc
Confidence 333322110 001345677777777666554 4554322 122233222221 111 3457889999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
+++++++++. .....+-.|- .+..-..+. .+. ...+..+++.++++.++ ++.+|.+++.+...+
T Consensus 172 ~~~~~~~~g~---------~G~~~~S~d~-gG~tW~~~~----~~~-~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 172 PSGEYVAVSS---------RGSFYSTWEP-GQTAWEPHN----RTT-SRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS 235 (327)
T ss_dssp TTSCEEEEET---------TSSEEEEECT-TCSSCEEEE----CCS-SSCEEEEEECTTSCEEE-EETTTEEEEEETTEE
T ss_pred CCCcEEEEEC---------CCcEEEEeCC-CCCceeECC----CCC-CCccceeEECCCCCEEE-EeCCceEEEecCCCC
Confidence 9999888774 3233333321 122211121 234 56788999999987654 456787777643323
Q ss_pred cccccccCCceeeeeec-ccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec---cccCceeEEEEeCCCCE
Q 040987 588 LQQKDLQSSGWSCHAVG-SYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG---ETLTPIMNMSFVGSSEY 663 (762)
Q Consensus 588 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~dg~~ 663 (762)
+.-... ... ......+.++++.+++.+++++.++.| .+..+.|+--..+. .....+.++.|.+++ .
T Consensus 236 ~tW~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~ 305 (327)
T 2xbg_A 236 ENWGEL--------LSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-Q 305 (327)
T ss_dssp EEECCC--------BCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-E
T ss_pred CeeEec--------cCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-c
Confidence 321111 111 012345889999999998888888877 45555554333333 223568889998655 4
Q ss_pred EEEEEcCCCCeEEEEE
Q 040987 664 LVATSWGSKPQLSVWN 679 (762)
Q Consensus 664 l~s~~~d~~~~v~vwd 679 (762)
++.++.+|. |.-++
T Consensus 306 ~~~~G~~G~--i~~~~ 319 (327)
T 2xbg_A 306 GFILGQKGI--LLRYV 319 (327)
T ss_dssp EEEECSTTE--EEEEC
T ss_pred eEEEcCCce--EEEEc
Confidence 667777875 66554
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.36 E-value=0.00078 Score=68.87 Aligned_cols=248 Identities=8% Similarity=-0.084 Sum_probs=150.0
Q ss_pred EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCc----eEEEEEccCCCCCCC
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSM----EIIRSISGIKLPCPL 441 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~----~~~~~~~~~~~~~~~ 441 (762)
+|+.+. ...|+..+++......+......+..++|++.+..|+.+. ..+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~----- 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI----- 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC-----
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC-----
Confidence 444443 4688999998776655555566788999998777766665 4577888888652 1222222111
Q ss_pred CCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 442 PEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
.....+++.+. +++.++-...+.|.+.++........+.. . ......++++|.+.+|..+...
T Consensus 159 -----~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~--~--------~~~P~~iavdp~~g~ly~td~~- 222 (400)
T 3p5b_L 159 -----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--N--------GSKPRAIVVDPVHGFMYWTDWG- 222 (400)
T ss_dssp -----SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC--S--------SCCEEEEEEETTTTEEEEEECS-
T ss_pred -----CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC--C--------CCCcceEEEecccCeEEEEeCC-
Confidence 45678999984 44445555678899999875433222211 1 3347899999977777666521
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCcee
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
..+.|...+++........ ... -...+.++++|++..|+.+. ..+.|..+|+..........
T Consensus 223 ------~~~~I~~~~~dG~~~~~~~-----~~~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~----- 285 (400)
T 3p5b_L 223 ------TPAKIKKGGLNGVDIYSLV-----TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE----- 285 (400)
T ss_dssp ------SSCCEEEEETTSCSCEEEE-----CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-----
T ss_pred ------CCCEEEEEeCCCCccEEEE-----ECC-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-----
Confidence 2367888888765433222 122 34678999998877776664 45679999987543322210
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
..........+++. .+.++.+-. .+.|..+|..+|+.+..+........++...
T Consensus 286 ----~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 286 ----DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 340 (400)
T ss_dssp ----CSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEE
T ss_pred ----CCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence 11122344567762 333333434 7889999988887766665444444555443
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00031 Score=72.63 Aligned_cols=247 Identities=11% Similarity=0.036 Sum_probs=136.8
Q ss_pred CeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-C----ce
Q 040987 396 PLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-N----YC 469 (762)
Q Consensus 396 ~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d----g~ 469 (762)
....++++| ++..|+++...+.|+.+|+..+........ . .....+++++++++|+++.. + ..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-~----------~~P~~ia~d~~G~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-L----------SKVRTICWTHEADSMIITNDQNNNDRPN 206 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-C----------SCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-C----------CCcceEEEeCCCCEEEEEeCCCCcccce
Confidence 356788998 466677666658899999987665544432 1 45789999999996666543 1 13
Q ss_pred EEEEEcCCCCce--eeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 470 IHFYSLLDDRGI--SEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 470 i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
+..++.. +... ..+.. ......++++| +|.++++-. ..+.|..++..+..... +.
T Consensus 207 v~~~~~~-g~~~~~~~l~~-----------~~~p~giavdp~~g~lyv~d~---------~~~~V~~~~~~~~~~~~-~~ 264 (430)
T 3tc9_A 207 NYILTRE-SGFKVITELTK-----------GQNCNGAETHPINGELYFNSW---------NAGQVFRYDFTTQETTP-LF 264 (430)
T ss_dssp EEEEEGG-GTSCSEEEEEE-----------CSSCCCEEECTTTCCEEEEET---------TTTEEEEEETTTTEEEE-EE
T ss_pred EEEEeCC-Cceeeeeeecc-----------CCCceEEEEeCCCCEEEEEEC---------CCCEEEEEECCCCcEEE-EE
Confidence 4444433 2222 12211 12256788999 555554443 56789999988654321 11
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccc--ccc--cccc----CCceeeeeecccCCCCeE-EEEE
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDE--LQQ--KDLQ----SSGWSCHAVGSYKKKAMT-AAAF 616 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~--~~~--~~~~----~~~~~~~~~~~~~~~~i~-~~~~ 616 (762)
. .+. ...-..++|+|+|++|+.+ ...+.|..++.... ... ..+. ...+.-.......-.... .++.
T Consensus 265 ~---~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v 340 (430)
T 3tc9_A 265 T---IQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFV 340 (430)
T ss_dssp E---CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEE
T ss_pred E---cCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEE
Confidence 1 122 2356789999999955544 45678999887642 110 0000 000000000000111223 4555
Q ss_pred c--------CCCcEEEEEc-CCeEEEEeCCCCeEEEEecc----c-------------cCceeEEEEeCCCCEEEEEEcC
Q 040987 617 S--------ADGSVLAVAA-ETVITLWDPDRNVLVAVIGE----T-------------LTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 617 s--------~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~----~-------------~~~v~~~~~s~dg~~l~s~~~d 670 (762)
. ++|.+.++-. .+.|+.++. +|+....... . -..-..++++|++..|+.+...
T Consensus 341 ~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 419 (430)
T 3tc9_A 341 KNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419 (430)
T ss_dssp ECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred ccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence 3 3455544444 789999994 4654433311 0 1136789999964555555444
Q ss_pred CCCeEEEEECC
Q 040987 671 SKPQLSVWNMS 681 (762)
Q Consensus 671 ~~~~v~vwd~~ 681 (762)
+ .+|+.++++
T Consensus 420 n-~rIr~i~~e 429 (430)
T 3tc9_A 420 N-RRIRKIGYE 429 (430)
T ss_dssp G-TEEEEEEEC
T ss_pred C-CeEEEEccC
Confidence 3 248777654
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.33 E-value=0.0011 Score=67.84 Aligned_cols=232 Identities=9% Similarity=-0.056 Sum_probs=143.5
Q ss_pred cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCC---ceeeEEeecc
Q 040987 414 ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDR---GISEVQVCER 489 (762)
Q Consensus 414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~---~~~~~~~~~~ 489 (762)
....|+..++........+... ..+..++|++.+..|... ...+.|+.+++.... ....+.. ..
T Consensus 90 ~~~~I~~i~l~~~~~~~~~~~~-----------~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-~~ 157 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLIPNL-----------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RD 157 (400)
T ss_dssp ETTEEEEECTTSCSCEEEECSC-----------SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-SS
T ss_pred ccceeEEEccCCcceeEecccc-----------CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-CC
Confidence 5578888888876554444332 467899999866655554 456788888886532 1111111 01
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
......+++.+.+..|..+.. ..+.|.+.+++.......+. .. ......+++.|.+..
T Consensus 158 --------~~~p~glavD~~~~~lY~~d~--------~~~~I~~~~~~g~~~~~l~~-----~~-~~~P~~iavdp~~g~ 215 (400)
T 3p5b_L 158 --------IQAPDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRKTLFR-----EN-GSKPRAIVVDPVHGF 215 (400)
T ss_dssp --------CSCEEEEEEETTTTEEEEEET--------TTTEEEEECTTTCSEEEEEE-----CS-SCCEEEEEEETTTTE
T ss_pred --------CCCcccEEEEecCCceEEEEC--------CCCeEEEEeCCCCceEEEEe-----CC-CCCcceEEEecccCe
Confidence 335788999986666665542 56789998887654332221 12 345789999997666
Q ss_pred EEEEeC--CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEe
Q 040987 570 AVSSSY--GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 570 l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l 645 (762)
|+.... .+.|...++......... ...-.....|++++++..|..+. .+.|..+|++.......+
T Consensus 216 ly~td~~~~~~I~~~~~dG~~~~~~~-----------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 216 MYWTDWGTPAKIKKGGLNGVDIYSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 284 (400)
T ss_dssp EEEEECSSSCCEEEEETTSCSCEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCCccEEEE-----------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE
Confidence 665543 367888888754432222 11235678999999888888775 789999999765433333
Q ss_pred cc--ccCceeEEEEeCCCCEEEEEE-cCCCCeEEEEECCCCceeeEEEEeec
Q 040987 646 GE--TLTPIMNMSFVGSSEYLVATS-WGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 646 ~~--~~~~v~~~~~s~dg~~l~s~~-~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.. .......+++. +..|+.+. ..+. |..+|..+|+....+.....
T Consensus 285 ~~~~~l~~P~gl~v~--~~~lywtd~~~~~--V~~~~~~~G~~~~~i~~~~~ 332 (400)
T 3p5b_L 285 EDEKRLAHPFSLAVF--EDKVFWTDIINEA--IFSANRLTGSDVNLLAENLL 332 (400)
T ss_dssp ECSSTTSSEEEEEEE--TTEEEEEESSSCS--EEEEESSSCCCCEEEECSCS
T ss_pred eCCCCCCCCEEEEEe--CCEEEEecCCCCe--EEEEEcCCCCceEEEecCCC
Confidence 22 22334567763 33444444 4444 99999888887776664443
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.00048 Score=71.15 Aligned_cols=247 Identities=9% Similarity=0.030 Sum_probs=136.2
Q ss_pred CeEEEEeCCC--CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ce
Q 040987 396 PLLYFTESPD--PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YC 469 (762)
Q Consensus 396 ~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~ 469 (762)
....++++|+ +..|+++...+.|+.++..++........ . .....++++++|+++++.... ..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~-~----------~~P~giavd~dG~lyVad~~~~~~~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN-I----------GQCADVNFTLNGDMVVVDDQSSDTNTG 208 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC-C----------SCEEEEEECTTCCEEEEECCSCTTSEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC-C----------CCccEEEECCCCCEEEEcCCCCcccce
Confidence 3567899984 45566665558999999987776554432 1 457899999999944443311 12
Q ss_pred EEEEEcCCCCce-eeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 470 IHFYSLLDDRGI-SEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 470 i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
+..++...+... ..+.. ......++++| +|.+.++-. .++.|+.++..++.....+..
T Consensus 209 v~~~~~~~~~~~~~~~~~-----------~~~P~giavd~~~G~lyv~d~---------~~~~V~~~d~~~g~~~~~~~~ 268 (433)
T 4hw6_A 209 IYLFTRASGFTERLSLCN-----------ARGAKTCAVHPQNGKIYYTRY---------HHAMISSYDPATGTLTEEEVM 268 (433)
T ss_dssp EEEECGGGTTCCEEEEEE-----------CSSBCCCEECTTTCCEEECBT---------TCSEEEEECTTTCCEEEEEEE
T ss_pred EEEEECCCCeeccccccc-----------cCCCCEEEEeCCCCeEEEEEC---------CCCEEEEEECCCCeEEEEEec
Confidence 333443222111 11110 12346788999 555444443 567899998886654222221
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEccc--ccccc--cc----cCCceeeeeecccCCCCeEEEEE--
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICND--ELQQK--DL----QSSGWSCHAVGSYKKKAMTAAAF-- 616 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~--~~~~~--~~----~~~~~~~~~~~~~~~~~i~~~~~-- 616 (762)
.+. ...-..++|+|++++|+.+ ...+.|+.+++.. +.... .+ ....+.-.......-.....+++
T Consensus 269 ---~~~-~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 269 ---MDT-KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp ---CSC-CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred ---cCC-CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 122 2233479999999955554 4567898888753 22110 00 00000000000011234677999
Q ss_pred -------cCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc------------------cCceeEEEEe-CCCCEEEEEEc
Q 040987 617 -------SADGSVLAVAA-ETVITLWDPDRNVLVAVIGET------------------LTPIMNMSFV-GSSEYLVATSW 669 (762)
Q Consensus 617 -------s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~------------------~~~v~~~~~s-~dg~~l~s~~~ 669 (762)
.++|.+.++-. .+.|+.++. +|...... +. -..-..++++ ++|. |+.+..
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~ 421 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDC 421 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEG
T ss_pred cccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeC
Confidence 66776665555 789999986 56544332 21 1225679999 4554 444443
Q ss_pred CCCCeEEEEECC
Q 040987 670 GSKPQLSVWNMS 681 (762)
Q Consensus 670 d~~~~v~vwd~~ 681 (762)
.+ .+|+..+++
T Consensus 422 ~n-~rIr~i~~e 432 (433)
T 4hw6_A 422 DN-HRVRKIAPE 432 (433)
T ss_dssp GG-TEEEEEEEC
T ss_pred CC-CEEEEEecC
Confidence 33 237777654
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.32 E-value=0.00082 Score=66.15 Aligned_cols=233 Identities=11% Similarity=0.020 Sum_probs=141.9
Q ss_pred cCCcEEEEEcCCce--EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE-EeecCceEEEEEcCCCCceeeEEeeccc
Q 040987 414 ADNQVHLLKMPSME--IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 414 ~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
....|+.+++.... ....+.+. .....++|++.+..|. +-...+.|..+++........+... .
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~-----------~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~- 77 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGL-----------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-G- 77 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEE-----------EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-C-
T ss_pred ccCeEEEEECCCCceEEEEEecCC-----------CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-C-
Confidence 45678888887652 22222221 3456889998655444 4456688999998765322222111 0
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
......+++.+.+..|..+.. ..+.|.+++++.......+ ... ......+++.|.+..|
T Consensus 78 -------l~~p~glavd~~~g~ly~~d~--------~~~~I~~~~~dG~~~~~l~-----~~~-~~~P~giavdp~~g~l 136 (318)
T 3sov_A 78 -------LLSPDGLACDWLGEKLYWTDS--------ETNRIEVSNLDGSLRKVLF-----WQE-LDQPRAIALDPSSGFM 136 (318)
T ss_dssp -------CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCEEEE-----CSS-CSSEEEEEEEGGGTEE
T ss_pred -------CCCccEEEEEcCCCeEEEEEC--------CCCEEEEEECCCCcEEEEE-----eCC-CCCccEEEEeCCCCEE
Confidence 123567899986666655542 5678999998765432221 122 4467899999976666
Q ss_pred EEEeC--CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEec
Q 040987 571 VSSSY--GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 571 ~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~ 646 (762)
+.+.. .+.|...++......... ...-.....++++|++..|..+. .+.|..+|++.......+.
T Consensus 137 y~td~~~~~~I~r~~~dG~~~~~~~-----------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~ 205 (318)
T 3sov_A 137 YWTDWGEVPKIERAGMDGSSRFIII-----------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 205 (318)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred EEEecCCCCEEEEEEcCCCCeEEEE-----------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec
Confidence 65553 467888887643322211 11234568999999888877775 7899999997543333333
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
+.......+++.. ..|+.+...+ +.|..++..+|+....+.....
T Consensus 206 ~~~~~P~glav~~--~~lywtd~~~-~~V~~~~~~~G~~~~~i~~~~~ 250 (318)
T 3sov_A 206 GSLPHPFALTLFE--DILYWTDWST-HSILACNKYTGEGLREIHSDIF 250 (318)
T ss_dssp SCCSCEEEEEEET--TEEEEEETTT-TEEEEEETTTCCSCEEEECCCS
T ss_pred CCCCCceEEEEeC--CEEEEEecCC-CeEEEEECCCCCceEEEeCCCC
Confidence 2334456777754 3444444332 3599999988988776665543
No 291
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.25 E-value=0.017 Score=67.09 Aligned_cols=523 Identities=11% Similarity=0.056 Sum_probs=261.3
Q ss_pred eeEEEEecCCCeEEEEecCCc--------ceeeeecCcccccCCceeecC----CCEEEEEe----CCEEEEEEcccc-e
Q 040987 43 SFIFAVARSSGLCRTAEYPAV--------NSKMIRGGRSYVSSPPAFSND----VKRLLVCT----SNTVSIFSTSTG-L 105 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~--------~~~~~~~h~~~v~~~~~~s~d----g~~la~~~----~~~i~iwd~~~~-~ 105 (762)
..++.+|+..|.=.+|.+... +.+.....-++|.. ++.-.. ...|++++ +|.+++..-.-+ +
T Consensus 337 ~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D-~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~ 415 (1158)
T 3ei3_A 337 NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD-MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIH 415 (1158)
T ss_dssp TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEE-EEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEE
T ss_pred CCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCcee-EEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEE
Confidence 336777787777777777642 12223444566765 555321 12444444 288888764222 1
Q ss_pred EEe--eecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCC
Q 040987 106 QIS--SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK 183 (762)
Q Consensus 106 ~~~--~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (762)
.+. .+. ....++.+....++. .-.||+.+..+.| .|+.+. ++.+..++... .+.
T Consensus 416 ~~~~~~l~-gv~~iWtl~~~~~~~----~~~yLvlS~~~~T-~Vl~i~-~e~veev~~~g----------------f~~- 471 (1158)
T 3ei3_A 416 EHASIDLP-GIKGLWPLRSDPNRE----TDDTLVLSFVGQT-RVLMLN-GEEVEETELMG----------------FVD- 471 (1158)
T ss_dssp EEEEECCC-SCCEEEEECCCSSCS----SCCEEEEEETTEE-EEEEEE-TTEEEEECCTT----------------CCS-
T ss_pred EEEeecCC-CccEEEEEeecCCCC----CCCEEEEECCCCe-EEEEEe-CCccccccccc----------------ccC-
Confidence 222 233 234566665432210 0057777776666 555543 22232222110 000
Q ss_pred CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEc
Q 040987 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKV 263 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~ 263 (762)
....|+....++...++- ....|++.+...+..+..........|...+.+. .+++.+.++.+.++++
T Consensus 472 ~~~TL~~~~l~~~~ivQV----------t~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~g~~l~~fel 539 (1158)
T 3ei3_A 472 DQQTFFCGNVAHQQLIQI----------TSASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAVGRALYYLQI 539 (1158)
T ss_dssp SSCEEEEEEETTTEEEEE----------ESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEETTEEEEEEE
T ss_pred CCCcEEEEEcCCCeEEEE----------ecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEECCEEEEEEe
Confidence 111133333322211111 3345666665544333223223334566666553 4565446788888888
Q ss_pred cCchhhhheeeeeeeccCcCeEEEEEcCC------CcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCC
Q 040987 264 PDVEAERVVMRKITLHHTKKLTVLAFHPT------QRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPG 336 (762)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (762)
..++.. ...+ ..-...|.|+++.|. ++++|+|.. |++|+|+++.+.+.+..
T Consensus 540 ~~~~L~--~~~~--~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~------------------ 597 (1158)
T 3ei3_A 540 HPQELR--QISH--TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK------------------ 597 (1158)
T ss_dssp ETTEEE--EEEE--EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE------------------
T ss_pred eCCcee--eecc--cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE------------------
Confidence 765432 1111 223567999999863 369999986 99999999975443320
Q ss_pred cccCCccccceeeeccccceeEEEEe--cCCCEEEEEecCCeEEEEec--CCCcee----ccCCCCCCeEEEEeCCCCCe
Q 040987 337 VRDNDDADLCTTWHWHPSEVSVLIFS--SDGAYLYSGGKEGVLVVWQL--DTGKKK----FLPRIGSPLLYFTESPDPSL 408 (762)
Q Consensus 337 ~~~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~i~~wd~--~~~~~~----~~~~~~~~v~~~~~s~~~~~ 408 (762)
..+.. .....++.+. ....+|..|-.||.+..+.+ .+++.. ...+ ..++.-..+...|..
T Consensus 598 ----------~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~ 665 (1158)
T 3ei3_A 598 ----------EMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTT 665 (1158)
T ss_dssp ----------EECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCE
T ss_pred ----------EECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCce
Confidence 11110 0112223222 23356778888888765544 344442 1111 234443334334444
Q ss_pred EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCce-eeEEEeCC--CCEEEEeecCceEEEEEcCCCCceeeEE
Q 040987 409 SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC-RDIAFNHD--GGLVALRAENYCIHFYSLLDDRGISEVQ 485 (762)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 485 (762)
-+.+..+....+|..+..-....+.. ..+ ....|+.. ..-++..+ ++.+++..+..........
T Consensus 666 ~V~a~s~rp~liy~~~~~l~~s~l~~------------~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ 732 (1158)
T 3ei3_A 666 NVFACSDRPTVIYSSNHKLVFSNVNL------------KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRT 732 (1158)
T ss_dssp EEEEESSSCEEEEESSSSEEEEEBSS------------SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEE
T ss_pred eEEEECCCCEEEEEcCCceEEeccCh------------HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEE
Confidence 33344455555555432211111211 112 22334332 12344443 4458888876543322222
Q ss_pred eecccccCCCCcceeEEEEEEecCCCeEEEEeeecc---ccC------------------------------------C-
Q 040987 486 VCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA---EEG------------------------------------I- 525 (762)
Q Consensus 486 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~---~~~------------------------------------~- 525 (762)
... ...+..++++|+.+.++.+..+.. .++ .
T Consensus 733 ipL---------~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 803 (1158)
T 3ei3_A 733 VPL---------YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEE 803 (1158)
T ss_dssp EEC---------SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCE
T ss_pred EeC---------CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCc
Confidence 222 456899999998887766553321 000 0
Q ss_pred CceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEE---EcCC-CCeEEEEe----------CCCcEEEEEcccccccc
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA---FHPN-RRAAVSSS----------YGGDFKVWICNDELQQK 591 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~---~spd-~~~l~~~~----------~dg~i~iwd~~~~~~~~ 591 (762)
.....|++.|..+.+....+. +.. ...+.+++ |..+ ..+++.|+ ..|.|.+|++..++...
T Consensus 804 ~~~s~i~lidp~t~~~i~~~~---l~~--nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l 878 (1158)
T 3ei3_A 804 VEVHNLLIIDQHTFEVLHAHQ---FLQ--NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT 878 (1158)
T ss_dssp EEEEEEEEEETTTCCEEEEEE---CCT--TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE
T ss_pred eeeEEEEEEeCCCCeEEEEEe---CCC--CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE
Confidence 023568888887776543332 222 23444444 4333 46788776 24789999997433222
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEE-EeccccCceeEEEEeCCCCEEEEEEcC
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVA-VIGETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~-~l~~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
.. .....+.+++++-- +| +|++|-...|++|++...+.+. ... +-..|..+.....+.+++.|..-
T Consensus 879 v~----------~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~ 945 (1158)
T 3ei3_A 879 VA----------EKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELRTECN-HYNNIMALYLKTKGDFILVGDLM 945 (1158)
T ss_dssp EE----------EEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEEEEE-ECCCSCEEEEEEETTEEEEEESS
T ss_pred EE----------EEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEEEEee-ccccEEEEEEeccCCEEEEEEhh
Confidence 11 01235678877643 45 5555667899999998765433 221 11223333333346677777655
Q ss_pred CCCeEEEE
Q 040987 671 SKPQLSVW 678 (762)
Q Consensus 671 ~~~~v~vw 678 (762)
.. |.+.
T Consensus 946 ~S--v~~~ 951 (1158)
T 3ei3_A 946 RS--VLLL 951 (1158)
T ss_dssp BC--EEEE
T ss_pred he--EEEE
Confidence 54 5443
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.00084 Score=69.31 Aligned_cols=262 Identities=9% Similarity=0.002 Sum_probs=144.9
Q ss_pred ceeEEEEec-CCCEEEEEec-CCeEEEEecCCCceeccCCCC----CCeEEEEe-------CCCCCeEEEEecCC-----
Q 040987 355 EVSVLIFSS-DGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIG----SPLLYFTE-------SPDPSLSSISCADN----- 416 (762)
Q Consensus 355 ~v~~~~~s~-~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~----~~v~~~~~-------s~~~~~l~~~~~d~----- 416 (762)
....|+|+| +...|+.+.. .+.|++.|++++....+.... .....++| +++|+.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 3555555544 467999999988775543322 25789999 99999777776554
Q ss_pred --cEEEEEcCC-ceEE-----EEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcC-------CCCc
Q 040987 417 --QVHLLKMPS-MEII-----RSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLL-------DDRG 480 (762)
Q Consensus 417 --~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~-------~~~~ 480 (762)
.+.+++... +... ..+... .....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-----------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-----------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-----------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred CceEEEEecCCCCceeecccceeeccC-----------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 255665333 1211 112111 23467899995 4555556677889999997 4543
Q ss_pred -----------eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce----eEE
Q 040987 481 -----------ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE----FTL 545 (762)
Q Consensus 481 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~ 545 (762)
...+..... ......++|+|+|++|..+.. ..+.|+.++....... ..+
T Consensus 289 ~tp~~~~~~g~~~~l~~~~~--------~~~p~~ia~~p~G~~lYvaD~--------~~h~I~kid~dg~~~~~~~~~~~ 352 (496)
T 3kya_A 289 WDPIVKNNPNTFKQLFTIAD--------PSWEFQIFIHPTGKYAYFGVI--------NNHYFMRSDYDEIKKEFITPYNF 352 (496)
T ss_dssp CCCBGGGCTTTEEEEEECSS--------SSCCEEEEECTTSSEEEEEET--------TTTEEEEEEEETTTTEECCCEEE
T ss_pred ecccccccccccceeEecCC--------CCCceEEEEcCCCCEEEEEeC--------CCCEEEEEecCCCcceecccEEe
Confidence 112211111 234578999999997666653 6678888776543211 111
Q ss_pred EEE-eecCCC--------CCceE-EEEEc-------CCCCeEEEEeCCCcEEEEEcccccccccccC-C--------cee
Q 040987 546 STI-VYEPHR--------DAGIS-AVAFH-------PNRRAAVSSSYGGDFKVWICNDELQQKDLQS-S--------GWS 599 (762)
Q Consensus 546 ~~~-~~~~h~--------~~~v~-~~~~s-------pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~--------~~~ 599 (762)
... -..+.. -..-. .++.. +++.++++-...+.|+.++. ++......-. . .|.
T Consensus 353 aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G 431 (496)
T 3kya_A 353 VGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWG 431 (496)
T ss_dssp EEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCC
T ss_pred cCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccc
Confidence 110 001110 11233 44554 45666666666778888884 3422211100 0 000
Q ss_pred ee---eecccCCCCeEEEEEcCC-CcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 600 CH---AVGSYKKKAMTAAAFSAD-GSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 600 ~~---~~~~~~~~~i~~~~~s~d-g~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
.. ......-.....++++++ |.++++=. +.+|+.++++.......
T Consensus 432 ~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 432 TDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp CCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred cCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 00 000111245678999997 55444434 78999999887655443
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.15 E-value=0.0017 Score=72.01 Aligned_cols=234 Identities=9% Similarity=-0.048 Sum_probs=141.5
Q ss_pred cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE-EeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 414 ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
....|+..++........+... ..+..++|++....|+ +-...+.|+.+++................
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~-----------~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~- 469 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNL-----------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD- 469 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSC-----------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-
T ss_pred cccceeEeeccCCcceeeecCC-----------CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-
Confidence 4567888888765544444332 4667899998555554 44456788888886532100101110100
Q ss_pred CCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE
Q 040987 493 PGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
......|++.+.++.|..+.. ..+.|.+.++........+ ... ......|++.|.+.+|+.
T Consensus 470 -----l~~P~GLAvD~~~~~LY~tD~--------~~~~I~v~~ldG~~~~~l~-----~~~-l~~P~gIaVDp~~g~LYw 530 (791)
T 3m0c_C 470 -----IQAPDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRKTLF-----REN-GSKPRAIVVDPVHGFMYW 530 (791)
T ss_dssp -----CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSSSEEEEE-----ECT-TCCEEEEEEETTTTEEEE
T ss_pred -----CCCcceeeeeecCCcEEEEec--------CCCeEEEEeCCCCeEEEEE-----eCC-CCCcceEEEecCCCCEEE
Confidence 234668999998877776653 6679999998865432222 122 446789999998666665
Q ss_pred EeC-C-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccc
Q 040987 573 SSY-G-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGET 648 (762)
Q Consensus 573 ~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~ 648 (762)
... . +.|.+.++......... ...-.....|++.+.+..|..+. ...|...+++.......+...
T Consensus 531 tD~g~~~~I~~~~~dG~~~~~lv-----------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~ 599 (791)
T 3m0c_C 531 TDWGTPAKIKKGGLNGVDIYSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 599 (791)
T ss_dssp EECSSSCEEEEEETTSCCEEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT
T ss_pred ecCCCCCeEEEEecCCCceEEEE-----------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC
Confidence 543 2 67888888654433222 12235678999998888877775 689999999765444444321
Q ss_pred --cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 649 --LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 649 --~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
......|++. +.+|+.+.... +.|...|..+|+.+..+...
T Consensus 600 ~~l~~P~glav~--~~~lYwtD~~~-~~I~~~dk~tG~~~~~l~~~ 642 (791)
T 3m0c_C 600 KRLAHPFSLAVF--EDKVFWTDIIN-EAIFSANRLTGSDVNLLAEN 642 (791)
T ss_dssp TTTSSEEEEEEE--TTEEEEEETTT-TEEEEEETTTCCCCEEEECS
T ss_pred CccCCCCEEEEe--CCEEEEEECCC-CEEEEEeCCCCcceEEeecC
Confidence 2234456664 44666665544 35888888888776665433
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.14 E-value=0.0061 Score=57.87 Aligned_cols=235 Identities=11% Similarity=0.176 Sum_probs=142.4
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
.+..|.+.|+..+.........- -+.-.+|..+.||.-....+.|+|+++.+.. +.. .....|.-=.|-.
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~A----dsAIMnP~~~ViALrag~~LQiFnletK~kl-----ks~-~~~e~VvfWkWis 116 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKAGKTLQIFNIEMKSKM-----KAH-TMTDDVTFWKWIS 116 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEETTEEEEEETTTTEEE-----EEE-ECSSCEEEEEECS
T ss_pred CCCEEEEEECCCCCCcccccccc----ceeeeCCCccEEEEecCCeEEEechHHhhhh-----cce-ecCCccEEEEecC
Confidence 34478899998877653332222 3445689999999777899999999998743 222 2235677777765
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc----cceeEEEEecCCCE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP----SEVSVLIFSSDGAY 367 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~s~~g~~ 367 (762)
+.. |+.-+ +..|+-|++.+.. .+.+.+..|. ..|..-..+++.++
T Consensus 117 ~~~-L~lVT-~taVyHWs~~~~s-----------------------------~P~kvFdR~~~L~~~QIInY~~d~~~kW 165 (365)
T 2xzh_A 117 LNT-VALVT-DNAVYHWSMEGES-----------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKW 165 (365)
T ss_dssp SSE-EEEEE-SSEEEEEESSTTC-----------------------------CCEEEEECCGGGTTCEEEEEEECTTSCE
T ss_pred CCe-EEEEc-CCcEEEEcccCCC-----------------------------CCceeeecchhcccceEEEEEECCCCCE
Confidence 554 44433 4579999986532 2233343332 34666677888888
Q ss_pred EEEEec-------CCeEEEEecCCCceeccCCCCCCeEEEEeCCC---CCeEEEEec---CCcEEEEEcCCce-EEEEEc
Q 040987 368 LYSGGK-------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD---PSLSSISCA---DNQVHLLKMPSME-IIRSIS 433 (762)
Q Consensus 368 l~s~~~-------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~---d~~i~i~d~~~~~-~~~~~~ 433 (762)
++..+- .|.+.+|..+.+..+.+.+|......+.+..+ .+++..+.. .+.+++.++.... --..+.
T Consensus 166 ~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~ 245 (365)
T 2xzh_A 166 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 245 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC
T ss_pred EEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc
Confidence 765442 37799999998877777666544333332211 123333322 2578888874320 000000
Q ss_pred cCCCCC-CCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 434 GIKLPC-PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 434 ~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
.....+ -.++...+...++..++.-..+..-+.-|.+++||++++..+..-...
T Consensus 246 kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS 300 (365)
T 2xzh_A 246 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 300 (365)
T ss_dssp CEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred cccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC
Confidence 000000 011222355678888888888888999999999999999887765543
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.14 E-value=0.0063 Score=57.78 Aligned_cols=278 Identities=8% Similarity=0.047 Sum_probs=163.8
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
+.+|.+.|+..+......... .-+.-.+|..+.+|.-. ...+.++|+++.+.++.+.-.. .|.--.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~--AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-----------~VvfWk 113 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS--ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-----------DVTFWK 113 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC--CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-----------CEEEEE
T ss_pred CCEEEEEECCCCCCccccccc--cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-----------ccEEEE
Confidence 347899999886653222221 23455688888887764 7789999999988888765432 344444
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
|-.+ +.|+..+. ..|+-|++........+........ ...|.....+++.++++..+...... .-.|.+.+
T Consensus 114 Wis~-~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~-----~~QIInY~~d~~~kW~~l~GI~~~~~--~v~G~mQL 184 (365)
T 2xzh_A 114 WISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLA-----GCQIINYRTDAKQKWLLLTGISAQQN--RVVGAMQL 184 (365)
T ss_dssp ECSS-SEEEEEES-SEEEEEESSTTCCCEEEEECCGGGT-----TCEEEEEEECTTSCEEEEEEEEEETT--EEEEEEEE
T ss_pred ecCC-CeEEEEcC-CcEEEEcccCCCCCceeeecchhcc-----cceEEEEEECCCCCEEEEEeEeccCC--ccceeEEE
Confidence 5443 34555544 4699999976443333222111111 56788999999999988876432222 14688999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCC---CCeEEEEeCC---CcEEEEEcccc-cccccccCCceeeeeeccc
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN---RRAAVSSSYG---GDFKVWICNDE-LQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd---~~~l~~~~~d---g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 606 (762)
|..+.... . ..+|| ......+.+.-+ ..+++.+... +.+.|.++... .....+.............
T Consensus 185 YS~er~~s-Q-----~ieGh-aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea 257 (365)
T 2xzh_A 185 YSVDRKVS-Q-----PIEGH-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 257 (365)
T ss_dssp EETTTTEE-E-----EECCS-EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTC
T ss_pred Eeeccccc-c-----eeeee-eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccc
Confidence 99886532 1 23677 333222222111 1244444332 57889998543 1112221111111111223
Q ss_pred CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 607 KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
..+-..++..|+.-..+..-+ -|.|++||+++|.++..-+-..++|..-+-..+..=++.....|. |.--.++..
T Consensus 258 ~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~Gq--Vl~v~v~~~ 333 (365)
T 2xzh_A 258 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ--VLSVCVEEE 333 (365)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCE--EEEEEECTT
T ss_pred cCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCE--EEEEEECcc
Confidence 345556788888777777777 899999999999999877666666665555554444555555554 554444443
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.13 E-value=0.002 Score=63.28 Aligned_cols=234 Identities=12% Similarity=-0.038 Sum_probs=140.1
Q ss_pred EEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEE-EeecCCeEEEEeccCCceeecccccccccc
Q 040987 249 YFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA-AGDVTGRILIWRGFGDRTFATNDNKMNLNL 327 (762)
Q Consensus 249 ~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 327 (762)
+|..+....|+..++...... . .........+..++|++.+..|. +-...+.|..++..+....
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~---~-~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~----------- 70 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKEN---A-TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------- 70 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSC---C-EEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-----------
T ss_pred EEEEEccCeEEEEECCCCceE---E-EEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-----------
Confidence 566666788999999876421 0 12222234577899998655555 4445678888887654210
Q ss_pred cccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCC
Q 040987 328 MNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG-GKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPD 405 (762)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~ 405 (762)
...+.........+++.+.+..|+.+ ...+.|.+++++......+ .........+++.|.
T Consensus 71 ------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 71 ------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp ------------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG
T ss_pred ------------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC
Confidence 01112222346678898755555544 4567899999886544333 234456788999987
Q ss_pred CCeEEEEec--CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCcee
Q 040987 406 PSLSSISCA--DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 406 ~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 482 (762)
+..|+.+.. .+.|..+++........+...- .....+++++++..|..+ +..+.|..+|+.... ..
T Consensus 133 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l----------~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~ 201 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI----------YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQ 201 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETTSCSCEEEECSSC----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC----------CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eE
Confidence 777776653 4678888876432222222111 356899999977666655 456889999986432 22
Q ss_pred eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 483 EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
.+.... ......+++..+ .+..... ..+.|..++..+++....+
T Consensus 202 ~~~~~~---------~~~P~glav~~~--~lywtd~--------~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 202 AVVKGS---------LPHPFALTLFED--ILYWTDW--------STHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEECSC---------CSCEEEEEEETT--EEEEEET--------TTTEEEEEETTTCCSCEEE
T ss_pred EEecCC---------CCCceEEEEeCC--EEEEEec--------CCCeEEEEECCCCCceEEE
Confidence 222100 233566777533 3333332 6678888998777665444
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0025 Score=65.78 Aligned_cols=258 Identities=7% Similarity=-0.033 Sum_probs=142.2
Q ss_pred CeEEEEeCC-CCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE-------eCCCCEEEEeec
Q 040987 396 PLLYFTESP-DPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF-------NHDGGLVALRAE 466 (762)
Q Consensus 396 ~v~~~~~s~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~~~~l~~~~~ 466 (762)
....++++| +...|+++.. .+.|++.|+.++............. .....++| ++++++|+++..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~-------~~p~~ia~~~~~~~~d~~G~~lyvad~ 212 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPT-------NRIRSIAFNKKIEGYADEAEYMIVAID 212 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSC-------SBEEEEEECCCBTTTBCTTCEEEEEEC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcccc-------CCCcEEEEeecccccCCCCCEEEEEeC
Confidence 467899998 3555555444 4679999999877766554322111 45789999 999997766654
Q ss_pred Cc-------eEEEEEcCC-CCce-----eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 467 NY-------CIHFYSLLD-DRGI-----SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 467 dg-------~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
.+ .+.+++... +... ..+.. ......++++|++..|..+.. ..+.|..
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-----------~~~p~giavdp~~g~LYvtd~--------~~g~V~r 273 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-----------YKQCNGATIHPINGELYFNSY--------EKGQVFR 273 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-----------ESCCCCEEECTTTCCEEEEET--------TTTEEEE
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeecc-----------CCCceEEEEcCCCCeEEEEEC--------CCCEEEE
Confidence 43 366666443 1211 12211 112457788997666666553 6778999
Q ss_pred EEec-------CCCc-----------eeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEccccc--cc--
Q 040987 534 WVSG-------TQNK-----------EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDEL--QQ-- 590 (762)
Q Consensus 534 wd~~-------~~~~-----------~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~--~~-- 590 (762)
+|+. ++.. ...+. ..+. ...-..++|+|+|++|+.+ +..+.|+.++..... ..
T Consensus 274 ~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~---~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~ 349 (496)
T 3kya_A 274 LDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF---TIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP 349 (496)
T ss_dssp ECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE---ECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred EecccccccccCceeecccccccccccceeE---ecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc
Confidence 9998 4543 11221 1222 3456789999999965544 456778887654321 10
Q ss_pred cccc----CCceeeeeecccCCCCeE-EEEEc-------CCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc---------
Q 040987 591 KDLQ----SSGWSCHAVGSYKKKAMT-AAAFS-------ADGSVLAVAA-ETVITLWDPDRNVLVAVIGET--------- 648 (762)
Q Consensus 591 ~~~~----~~~~~~~~~~~~~~~~i~-~~~~s-------~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~--------- 648 (762)
..+. ...+.--......-.... .++.. ++|.+.++=. +.+|+.++ .+|.. .++.+.
T Consensus 350 ~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~ 427 (496)
T 3kya_A 350 YNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADG 427 (496)
T ss_dssp EEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHS
T ss_pred EEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCc
Confidence 0000 000000000000112234 34444 4555544444 89999999 45643 333221
Q ss_pred ---------------cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 649 ---------------LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 649 ---------------~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
-..-..|++++++..|+.+...+ .+|+.++++.....
T Consensus 428 ~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N-~rIrki~~~~~~~~ 479 (496)
T 3kya_A 428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG-HTIRTISMEQEENV 479 (496)
T ss_dssp CSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT-TEEEEEEECCCC--
T ss_pred cccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC-CEEEEEECCCCccc
Confidence 11256789998734555555444 25888887764433
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.09 E-value=0.001 Score=64.65 Aligned_cols=203 Identities=11% Similarity=0.186 Sum_probs=124.3
Q ss_pred CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec----CCCe--EEEEeeeccccCCCc--e
Q 040987 457 DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ----DGSL--MSTVDIKLAEEGIGS--L 528 (762)
Q Consensus 457 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~g~~--l~~~~~~~~~~~~~~--d 528 (762)
...+++.....+-+.+||+ +++.+..+.. ..+..+..-| .|+. ++.++.+ . +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~------------g~~nnVD~r~~~~l~g~~~dla~as~R-------~~~~ 98 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT------------GKLNNVDIRYDFPLNGKKVDIAAASNR-------SEGK 98 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC------------SCEEEEEEEEEEEETTEEEEEEEEEEC-------STTC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC------------CCcccEEEecccccCCceEeEEEEeCC-------CCCC
Confidence 3445555566778999999 7777766532 2345555544 3333 4454432 4 6
Q ss_pred eEEEEEEecCCC-ceeEEEEE--eecCCCCCceEEEEE--cCC-CC-eEEEEeCCCcEEEEEccc-------cccccccc
Q 040987 529 VCLKFWVSGTQN-KEFTLSTI--VYEPHRDAGISAVAF--HPN-RR-AAVSSSYGGDFKVWICND-------ELQQKDLQ 594 (762)
Q Consensus 529 ~~i~iwd~~~~~-~~~~~~~~--~~~~h~~~~v~~~~~--spd-~~-~l~~~~~dg~i~iwd~~~-------~~~~~~~~ 594 (762)
++|.+|++.... ....+... .. +.....+..+++ +|. ++ ++++...+|.+..|++.. .+.+..+.
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CeEEEEEECCCCCceeeccccccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 899999885322 22222100 00 010145566777 774 44 577778889999999843 22222221
Q ss_pred CCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC-----CCeEEEEec-ccc-CceeEEEE--eCCCC-E
Q 040987 595 SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD-----RNVLVAVIG-ETL-TPIMNMSF--VGSSE-Y 663 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~-----~~~~~~~l~-~~~-~~v~~~~~--s~dg~-~ 663 (762)
....+..|+..+....|.++. +..|..++.+ +++.+..+. ++- ..+..|++ .++++ +
T Consensus 178 ------------lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gy 245 (355)
T 3amr_A 178 ------------MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGY 245 (355)
T ss_dssp ------------CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEE
T ss_pred ------------CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEE
Confidence 235778899999888999997 7667777755 356665552 222 35888888 45666 6
Q ss_pred EEEEEcCCCCeEEEEECC-CCceeeEEEEee
Q 040987 664 LVATSWGSKPQLSVWNMS-KLSISWSYLLHV 693 (762)
Q Consensus 664 l~s~~~d~~~~v~vwd~~-~~~~~~~~~~~~ 693 (762)
|++++... +.+.+||.. +.+.+..|....
T Consensus 246 LivSsQG~-~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 246 LMASSQGN-SSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp EEEEEGGG-TEEEEEESSTTCCEEEEEEECC
T ss_pred EEEEcCCC-CEEEEEECCCCCcEEEEEEecC
Confidence 66666333 249999997 778887776544
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.09 E-value=0.00066 Score=65.92 Aligned_cols=205 Identities=12% Similarity=0.098 Sum_probs=118.5
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC----CCE--EEEee--c--CceEEEEE
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD----GGL--VALRA--E--NYCIHFYS 474 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~~--~--dg~i~i~d 474 (762)
...+++.....+.+.+||+ +|+.++.+.. +.+..+.+-|+ |+. ++.++ . +++|.+|+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~------------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC------------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC------------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 3455665667789999999 7888888764 34555555552 332 33333 3 57899997
Q ss_pred cCC-CCceeeEEeecccccCCCCcceeEEEEEE--ecC-CC-eEEEEeeeccccCCCceeEEEEEEecC---CCceeEEE
Q 040987 475 LLD-DRGISEVQVCERNHQPGDDVTVVVTLVAL--SQD-GS-LMSTVDIKLAEEGIGSLVCLKFWVSGT---QNKEFTLS 546 (762)
Q Consensus 475 ~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~~ 546 (762)
+.. ...+..+.... .+.......+..+++ +|. ++ ++++.. .++.+..|++.. +....++.
T Consensus 106 iDp~~~~l~~i~~~~---~pv~t~~~~pyGlcly~~~~~g~~yafV~~---------k~G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 106 IDGKNGTLQSMTDPD---HPIATAINEVYGFTLYHSQKTGKYYAMVTG---------KEGEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp ECTTTCCEEECSCTT---SCEECCCSSCCCEEEEECTTTCCEEEEEEC---------SSSEEEEEEEEECTTSCEEEEEE
T ss_pred ECCCCCceeeccccc---cCcCCCCCCeeEEEEEecCCCCcEEEEEEC---------CCCeEEEEEEEeCCCCcccceEE
Confidence 732 22233321100 000000134566777 774 54 455554 678999998843 22222221
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc-----ccccccCCceeeeeecccCCCCeEEEEE--cCC
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL-----QQKDLQSSGWSCHAVGSYKKKAMTAAAF--SAD 619 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~d 619 (762)
... .- ...+..++..+....|+.+-++.-|..++..... .+... ....-...+..|++ .++
T Consensus 174 R~f--~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~---------~~g~l~aDvEGLai~~~~~ 241 (355)
T 3amr_A 174 RAF--KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA---------DGRHLTRDIEGLTIYYAAD 241 (355)
T ss_dssp EEE--EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB---------SSSSBCSCEEEEEEEECGG
T ss_pred EEe--cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe---------cCCccccCcceEEEEecCC
Confidence 111 11 4578889999988899999988666666644221 11111 01122346788888 566
Q ss_pred Cc-EEEEEc--CCeEEEEeCC-CCeEEEEec
Q 040987 620 GS-VLAVAA--ETVITLWDPD-RNVLVAVIG 646 (762)
Q Consensus 620 g~-~la~~~--d~~i~iwd~~-~~~~~~~l~ 646 (762)
|+ +|++++ +.+..+||.+ +.+.+..+.
T Consensus 242 g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 242 GKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp GCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 66 666665 8899999997 667777664
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.03 E-value=0.0026 Score=70.58 Aligned_cols=235 Identities=7% Similarity=-0.124 Sum_probs=141.9
Q ss_pred EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCc----eEEEEEccCCCCCCC
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSM----EIIRSISGIKLPCPL 441 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~----~~~~~~~~~~~~~~~ 441 (762)
+|+.+ ....|+..++.......+......+..+++.+....|+.+. ..+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l----- 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI----- 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-----
T ss_pred ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC-----
Confidence 34443 33568888887766655555556788999998666666554 4567888888752 2222232111
Q ss_pred CCcccCceeeEEEeCCCCEEEE-eecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 442 PEEYKGLCRDIAFNHDGGLVAL-RAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
.....+++.+.++.|+. -...+.|.+.++.... ...+... . ......|++.|.+.+|..+...
T Consensus 471 -----~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~-~--------l~~P~gIaVDp~~g~LYwtD~g- 534 (791)
T 3m0c_C 471 -----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-N--------GSKPRAIVVDPVHGFMYWTDWG- 534 (791)
T ss_dssp -----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEEC-T--------TCCEEEEEEETTTTEEEEEECS-
T ss_pred -----CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeC-C--------CCCcceEEEecCCCCEEEecCC-
Confidence 45678999987755554 4566899999987543 2222211 1 2347899999987777766521
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCcee
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
....|...++........+ ... ......|++++.+..|+.+. ..+.|...++..........
T Consensus 535 ------~~~~I~~~~~dG~~~~~lv-----~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~----- 597 (791)
T 3m0c_C 535 ------TPAKIKKGGLNGVDIYSLV-----TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE----- 597 (791)
T ss_dssp ------SSCEEEEEETTSCCEEEEE-----CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-----
T ss_pred ------CCCeEEEEecCCCceEEEE-----eCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec-----
Confidence 2368888888755433222 222 34678999998776666654 45678888886544332221
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEec
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~ 646 (762)
....-....+|++ ++..|..+. .+.|...|..+|+.+..+.
T Consensus 598 ----~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 598 ----DEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp ----CTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ----CCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 1111223446666 334565554 7889989887776655553
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.02 E-value=0.015 Score=57.68 Aligned_cols=279 Identities=8% Similarity=0.059 Sum_probs=168.7
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
..+|.+.|+..+........ ..-+.-.+|..+.++.-. ...+.|+|+++...++.+.-.. .|.--.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi--~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-----------~VvfWk 112 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-----------DVTFWK 112 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC--CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-----------CCCEEE
T ss_pred CCeEEEEECCCCCcceeccc--ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-----------CceEEE
Confidence 34799999988665322222 223455688888887764 7899999999988888766433 333344
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceee-EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISE-VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
|-.+ +.|+..+. ..|+-|++........ +.....-. ...|.....+++.++++..+...... .-.|.+.
T Consensus 113 Wis~-~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~------~~QIInY~~d~~~kW~~l~GI~~~~~--~v~G~mQ 182 (494)
T 1bpo_A 113 WISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLA------GCQIINYRTDAKQKWLLLTGISAQQN--RVVGAMQ 182 (494)
T ss_dssp EEET-TEEEEECS-SEEEEEESSSSCCCEEEEECCGGGT------TCEEEEEEECTTSSEEEEEEEEEETT--EEEEEEE
T ss_pred ecCC-CeEEEEcC-CeeEEecccCCCCchhheecchhcc------cceEEEEEECCCCCeEEEEeecccCC--cccceEE
Confidence 4433 34555544 4699999976433332 22221111 56788999999999998776432222 1468999
Q ss_pred EEEecCCCceeEEEEEeecCCCCCceEEEEEcCC---CCeEEEEeCC---CcEEEEEcccc-cccccccCCceeeeeecc
Q 040987 533 FWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN---RRAAVSSSYG---GDFKVWICNDE-LQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 533 iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd---~~~l~~~~~d---g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 605 (762)
+|..+..... ..+|| ......+.+..+ ..+++.+... +.+.|.++... .....+............
T Consensus 183 LYS~er~~sQ------~ieGh-aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe 255 (494)
T 1bpo_A 183 LYSVDRKVSQ------PIEGH-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (494)
T ss_dssp EEESTTCCEE------EECCS-EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred Eeeccccccc------hheee-eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence 9998865321 13677 433333333211 1245555443 68999998643 111122111111111122
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
...+-..++..|+.-..+..-+ -|.|++||++++.++..-+-...+|.-.+-..+..=++.....|. |.--.++...
T Consensus 256 ~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~Gq--Vl~v~v~e~~ 333 (494)
T 1bpo_A 256 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ--VLSVCVEEEN 333 (494)
T ss_dssp STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCE--EEEEEECTTT
T ss_pred cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCce--EEEEEEcccc
Confidence 3345566888888878887777 899999999999998877666666666555555555555555554 6555555544
Q ss_pred e
Q 040987 685 I 685 (762)
Q Consensus 685 ~ 685 (762)
+
T Consensus 334 i 334 (494)
T 1bpo_A 334 I 334 (494)
T ss_dssp H
T ss_pred c
Confidence 3
No 302
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.00 E-value=0.038 Score=62.07 Aligned_cols=381 Identities=10% Similarity=0.010 Sum_probs=202.0
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec-----cCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH-----HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.|.++....+|.+.++.. +.+..++..+++.. ..... ....|.++...+++..|-.|+. +.+..++..
T Consensus 147 ~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~ 219 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFE-----GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPS 219 (758)
T ss_dssp CEEEEEECTTCCEEEEET-TEEEEEETTTTEEE-----EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETT
T ss_pred eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceE-----EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCC
Confidence 466777777888776554 56778887765432 11111 1234888888877765555554 458888875
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP 391 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~ 391 (762)
+++... ...+ ....|.++....+|...+ |+. +-+.+++..+++.....
T Consensus 220 ~~~~~~----------------------------~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 220 TGQIKQ----------------------------TEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp TTEEEE----------------------------EEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEEC
T ss_pred CCeEEe----------------------------ccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEE
Confidence 543211 0111 123578888777776554 444 45888888776543221
Q ss_pred C--------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE
Q 040987 392 R--------IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL 463 (762)
Q Consensus 392 ~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 463 (762)
. ....|.++....+|.+-+ |+..| +.++.... ....+...... .......|.++.-..+|.+.+
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~---~~~~~~~v~~i~~D~~g~lWi- 339 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQIT---GTGDGNQFYSLFRDSKGFYWF- 339 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHS---CSCCCCBEEEEEECTTCCEEE-
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCC---CCCCCceEEEEEEcCCCCEEE-
Confidence 1 123588888887776544 54555 55443321 11111100000 000114678888888877554
Q ss_pred eecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee
Q 040987 464 RAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 464 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
|+.+| +..++..++.... +...........-....|.++.-.++|++-+.. . +-+..||..+++...
T Consensus 340 Gt~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt----------~-~GL~~~~~~~~~~~~ 406 (758)
T 3ott_A 340 GGANG-LIRFTDPAGERHD-AIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT----------D-GSINRYDYATRQFIH 406 (758)
T ss_dssp EETTE-EEEESCTTSSCCC-CEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE----------T-TEEEEEETTTTEEEE
T ss_pred eeCCc-ceeecccccccce-eEEeccCCcCCCCCCCceEEEEECCCCCEEEEe----------C-CcHhhcCcCCCcEEE
Confidence 45555 6667665432111 110000000000013458888888888755533 2 358888887664321
Q ss_pred EEEEEeecC-CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc--ccccCCceeeeeecccCCCCeEEEEEcCCC
Q 040987 544 TLSTIVYEP-HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ--KDLQSSGWSCHAVGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 544 ~~~~~~~~~-h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 620 (762)
+......+ .....|.++...++|++.+ |+..+-+.++|..+.... ..+.. ..............|.++...++|
T Consensus 407 -~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g 483 (758)
T 3ott_A 407 -YNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIA-EQNYSVHNGLSGMFINQIIPDNEG 483 (758)
T ss_dssp -EEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEEC-SEEECGGGTCSCSCEEEEEECTTS
T ss_pred -eecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceec-ccccccccccccceeeeEEEcCCC
Confidence 11100000 0134688888887776544 665556888886531100 00000 000000001123468899999999
Q ss_pred cEEEE-EcCCeEEEEeCCCCeEEEEecc---ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 621 SVLAV-AAETVITLWDPDRNVLVAVIGE---TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 621 ~~la~-~~d~~i~iwd~~~~~~~~~l~~---~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
++-+. ++.+-|..+|..+++....... ....+.++....+|.+.+. +..| |..+|..+++
T Consensus 484 ~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G---l~~~~~~~~~ 547 (758)
T 3ott_A 484 NVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG---VMRINPKDES 547 (758)
T ss_dssp CEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE---EEEECC--CC
T ss_pred CEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc---eEEEecCCCc
Confidence 87653 4455688899988765543211 1235778888888876654 4555 8888876654
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.99 E-value=0.0014 Score=65.71 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=48.8
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeee--eeeccCcCeEEEEEcCC---CcEEEEeec-C-----C
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRK--ITLHHTKKLTVLAFHPT---QRIVAAGDV-T-----G 303 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~---~~~l~~~~~-d-----g 303 (762)
-.....++|.|||+++++...+.|.+++ +++.. .+.. ...........++|+|+ +..|.++.. . +
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~--~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLS--TYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEE--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCcc--EeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 4567899999999988887789999998 33321 1111 11223457899999998 555554433 2 5
Q ss_pred eEEEEeccC
Q 040987 304 RILIWRGFG 312 (762)
Q Consensus 304 ~v~vw~~~~ 312 (762)
.|..++...
T Consensus 106 ~v~r~~~~~ 114 (352)
T 2ism_A 106 QVVRLRHLG 114 (352)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEeCC
Confidence 677777654
No 304
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.93 E-value=0.051 Score=60.99 Aligned_cols=370 Identities=8% Similarity=0.008 Sum_probs=198.9
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCc
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~ 314 (762)
...|.++....+|.+.+++ +..+..||..+.... .........|.++.. .+|. |..++.+ .+..++..+++
T Consensus 62 ~~~i~~i~~d~~g~lWigT-~~Gl~~yd~~~~~f~-----~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~ 132 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGT-DNGILVYNYRADRYE-----QPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRK 132 (758)
T ss_dssp SSCEEEEEEETTTEEEEEE-TTEEEEEETTTTEEC-----CCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCC
T ss_pred CceEEEEEEcCCCcEEEEe-CCCeEEEeCCCCEEE-----CcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCe
Confidence 3467888877777655544 556889998876542 111112335777654 3554 5555555 57888875543
Q ss_pred eeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC--C
Q 040987 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP--R 392 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~--~ 392 (762)
... ... ..-.-....|.++....+|...+ ++.. -+..++..+++..... .
T Consensus 133 ~~~-~~~-------------------------~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~ 184 (758)
T 3ott_A 133 LTS-FDT-------------------------RRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPV 184 (758)
T ss_dssp EEE-ECH-------------------------HHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCC
T ss_pred EEE-ecc-------------------------CCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCC
Confidence 211 000 00000123577887777776555 4443 5778887776543221 1
Q ss_pred ----CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc
Q 040987 393 ----IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY 468 (762)
Q Consensus 393 ----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 468 (762)
....|.++....++..|.+++. +.+..++..+++.... .... ...|.++....+|.+.+ |+.+|
T Consensus 185 ~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~-~~l~---------~~~i~~i~~d~~g~lWi-gT~~G 252 (758)
T 3ott_A 185 HSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQT-EAFH---------NNSIKSLALDGNGDLLA-GTDNG 252 (758)
T ss_dssp CTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEE-EEEE---------EEEEEEEEECTTCCEEE-EETTE
T ss_pred ccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEec-cCCC---------CCeEEEEEEcCCCCEEE-EeCCc
Confidence 1224788888777776666664 5688899877654322 1111 14678888888877554 44554
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
+.+++..+... ..+..... .+..-....|.++....+|.+-+... .| +.++... . ........
T Consensus 253 -l~~~~~~~~~~-~~~~~~~~--~~~~l~~~~i~~i~~D~~g~lWiGT~----------~G-l~~~~~~-~-~~~~~~~~ 315 (758)
T 3ott_A 253 -LYVYHNDTTPL-QHIIHDSR--NIQSLTNNIIWNIFADQEHNIWLGTD----------YG-ISLSRYN-S-ALQFIPIS 315 (758)
T ss_dssp -EEEECCTTSCC-EEECCCTT--CTTSCSCSCEEEEEECTTCCEEEEES----------SS-EEEECCC-C--CEEEEHH
T ss_pred -eeEEecCCCcE-EEEEcCCC--CcCcCCcCeEEEEEEcCCCCEEEEeC----------Cc-ccccccC-C-ceeEEecc
Confidence 88888766532 11111100 00011145688888888887555442 24 3333221 1 11111000
Q ss_pred e--ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc--cccCCceeeeeecccCCCCeEEEEEcCCCcEEE
Q 040987 549 V--YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK--DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLA 624 (762)
Q Consensus 549 ~--~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la 624 (762)
. .... ...|.++.-..+|.+.+. +.+| +..++..++.... ..... ..........|.++.-..+|++-+
T Consensus 316 ~~~~~~~-~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~v~~i~~d~~g~lWi 388 (758)
T 3ott_A 316 QITGTGD-GNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMG----DKTYPLSHNRIRHIYEDKEQQLWI 388 (758)
T ss_dssp HHSCSCC-CCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTT----CSSSCCSCSCEEEEEECTTSCEEE
T ss_pred cCCCCCC-CceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccC----CcCCCCCCCceEEEEECCCCCEEE
Confidence 0 0011 346888888888876554 4555 6566654432111 00000 000011235688888888887554
Q ss_pred EEcCCeEEEEeCCCCeEEEEe--cc----ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 625 VAAETVITLWDPDRNVLVAVI--GE----TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 625 ~~~d~~i~iwd~~~~~~~~~l--~~----~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
|+++-+..||..+++..... .. ....|.++...++|.+.+ ++..+- |..+|..
T Consensus 389 -gt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~G--l~~~~~~ 447 (758)
T 3ott_A 389 -ATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGG--IFVVDKH 447 (758)
T ss_dssp -EETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSC--EEEEEHH
T ss_pred -EeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCc--eEEEccc
Confidence 44668999999887654322 11 123478888777776544 554433 8888854
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.85 E-value=6.4e-05 Score=82.92 Aligned_cols=241 Identities=8% Similarity=-0.117 Sum_probs=137.3
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCCc----eEEEEEccCCCCCCCCCcccCc
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPSM----EIIRSISGIKLPCPLPEEYKGL 448 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~ 448 (762)
...|+..++.+.+...+......+..++|++.+..|+.+.. .+.|+.+++... .....+... -..
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~----------~~~ 454 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----------IQA 454 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC----------C--
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC----------CCC
Confidence 35788888887776555544556778899987777776643 568888888751 111111100 023
Q ss_pred eeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 449 CRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 449 v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
...+++.+.+. ++++-...+.|.++++..... ..+... . ......++++|.+.+|+.+... .
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~-~--------~~~P~giavDp~~g~ly~td~~-------~ 517 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRE-Q--------GSKPRAIVVDPVHGFMYWTDWG-------T 517 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCC-S--------SCCCCCEECCSSSSCCEECCCS-------S
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeC-C--------CCCcceEEEccCCCcEEEcccC-------C
Confidence 46788886544 444445667899999865432 222110 0 1235678999977766665421 2
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.+.|..+++........+ ... ....+.|+|+|++..|+.+. ..+.|..+++.......... ...
T Consensus 518 ~~~I~~~~~dG~~~~~l~-----~~~-l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~---------~~~ 582 (699)
T 1n7d_A 518 PAKIKKGGLNGVDIYSLV-----TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE---------DEK 582 (699)
T ss_dssp SCCEEBCCSSSCCCCEES-----CSS-CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC---------CSS
T ss_pred CCeEEEEeCCCCCeeEEE-----eCC-CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe---------cCC
Confidence 267777777654322211 111 23456799999866655554 55689999987543322221 001
Q ss_pred CCCCeEEEEEcCCCcEEEEE-c-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 607 KKKAMTAAAFSADGSVLAVA-A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
.......|++..+ .|+.. . .+.|..++..+|+.+..+.........+++.
T Consensus 583 ~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 583 RLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp SCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred cCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 1123344555443 44444 3 7899999999998887775433334444443
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.82 E-value=0.0067 Score=60.62 Aligned_cols=246 Identities=12% Similarity=0.074 Sum_probs=125.1
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeee--eeeccCcCeEEEEEcCC---CcEEEEeec----C---
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRK--ITLHHTKKLTVLAFHPT---QRIVAAGDV----T--- 302 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~---~~~l~~~~~----d--- 302 (762)
-.....++|.|||+++++..++.|.+++. +++ . .+.. ...........++++|+ +..|.++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~--~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-K--LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCE-E--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-e--EeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45678999999999888877899999973 333 1 1111 11223456889999997 445544432 3
Q ss_pred -CeEEEEeccCCc-eeecccccccccccccccCCCCcccCCccccceeee-ccccceeEEEEecCCCEEEEEec------
Q 040987 303 -GRILIWRGFGDR-TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSVLIFSSDGAYLYSGGK------ 373 (762)
Q Consensus 303 -g~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~------ 373 (762)
+.|..|+..... .+.... ..+..+. ........++|.|||.+.++.+.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~-----------------------~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~ 160 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVK-----------------------TLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRL 160 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEE-----------------------EEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGG
T ss_pred ceEEEEEEECCCCcCcCccE-----------------------EEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCcc
Confidence 567777765431 000000 0001111 11112457999999987666442
Q ss_pred -------CCeEEEEecCCCc---------eeccCCCCCCeEEEEeCC-CCCeEEEEecCC---cEEEEEcCCceEEE---
Q 040987 374 -------EGVLVVWQLDTGK---------KKFLPRIGSPLLYFTESP-DPSLSSISCADN---QVHLLKMPSMEIIR--- 430 (762)
Q Consensus 374 -------dg~i~~wd~~~~~---------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~---~i~i~d~~~~~~~~--- 430 (762)
.|.|..++.+..- .+....+ .....++|+| +|.++++-...+ .|.+.. .+....
T Consensus 161 ~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~ 237 (354)
T 3a9g_A 161 AQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPL 237 (354)
T ss_dssp GTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTT
T ss_pred ccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCc
Confidence 2456666655320 1111222 2345788998 555444322211 133222 111000
Q ss_pred -----EEccCCCCCCCCCcccCceeeEEEe-------CCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 431 -----SISGIKLPCPLPEEYKGLCRDIAFN-------HDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 431 -----~~~~~~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
...+...+.............++|. .+|++++.....+.|...++................ .
T Consensus 238 ~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~------~ 311 (354)
T 3a9g_A 238 ATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV------F 311 (354)
T ss_dssp CCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT------S
T ss_pred ccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC------C
Confidence 0000000000000011356778883 567666666667788888887532222111111110 3
Q ss_pred eeEEEEEEecCCCeEEEE
Q 040987 499 VVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~ 516 (762)
..+..+++.|||.+.++.
T Consensus 312 ~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 312 GRLRDVVIDDDGGILIST 329 (354)
T ss_dssp CCEEEEEECTTSCEEEEE
T ss_pred CCeeEEEECCCCcEEEEE
Confidence 468899999999766655
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.0083 Score=57.76 Aligned_cols=222 Identities=10% Similarity=0.054 Sum_probs=125.8
Q ss_pred CeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEE---eCCCCEEEEeec----
Q 040987 396 PLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAF---NHDGGLVALRAE---- 466 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~---- 466 (762)
-..++.|.+....++.++ ..+.|..|+...+..... +.+.. ..-.....+..+.+ .|+++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s----~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS----SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC----CSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc----ccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 345688877666666665 689999999986544333 22100 00000124578999 688777775431
Q ss_pred ---------CceEEEEEcC---CCCceeeEEeeccccc--CC-CCcceeEEEEEEecCCCeEEEEeeeccccCCCce-eE
Q 040987 467 ---------NYCIHFYSLL---DDRGISEVQVCERNHQ--PG-DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSL-VC 530 (762)
Q Consensus 467 ---------dg~i~i~d~~---~~~~~~~~~~~~~~~~--~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d-~~ 530 (762)
+..|..||+. +++.+........... .. .........++..++|+..++.+ .. +.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s---------~~~~~ 160 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA---------LGMPA 160 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE---------ESSCE
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC---------CCCCe
Confidence 5779999999 7777665543211000 00 00024588999999999999887 33 55
Q ss_pred EEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeee-cc-cCC
Q 040987 531 LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV-GS-YKK 608 (762)
Q Consensus 531 i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~~ 608 (762)
|...+.+... ...+.............+.++++|+|+.|++....|.+..+|+...... .++ ... .. ...
T Consensus 161 I~rV~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~------~~~~G~~~~~ 232 (334)
T 2p9w_A 161 IARVSADGKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEP------VKINGDFGTL 232 (334)
T ss_dssp EEEECTTSCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEE------CEESSCCCCC
T ss_pred EEEEeCCCCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eec------ccccCCcccc
Confidence 5555555432 2211110001111334679999999998888877999999998832110 010 000 00 011
Q ss_pred CCeEEE-EEcCCCcEEEEEc--CCeEEEEeCCC
Q 040987 609 KAMTAA-AFSADGSVLAVAA--ETVITLWDPDR 638 (762)
Q Consensus 609 ~~i~~~-~~s~dg~~la~~~--d~~i~iwd~~~ 638 (762)
.....| ..-.+|+.|+++. .+.+.+.+.+.
T Consensus 233 ~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 233 SGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 223333 3335788866554 66666666554
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.80 E-value=0.0083 Score=59.23 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=124.4
Q ss_pred ceeeEEEeCCCCEEEEe------------ecCceEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEec--CCC-
Q 040987 448 LCRDIAFNHDGGLVALR------------AENYCIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQ--DGS- 511 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~------------~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~- 511 (762)
...++++.|+|..++++ ..+|.|.++|..+.. ...++....... +........+.+.+ ++.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~---~~~~f~PhGi~~~~d~dg~~ 127 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTL---DISSFNPHGISTFIDDDNTV 127 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSC---CGGGCCEEEEEEEECTTCCE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCC---CcCceeeeeeEEEECCCCcE
Confidence 34677788877554444 168999999987432 223333221001 00134566777766 454
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC---C------------
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY---G------------ 576 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~---d------------ 576 (762)
+|.++... ..+..|.+|+++.......+... +.+.+-...+.+++.++|.+.++... |
T Consensus 128 ~L~Vvnh~------~~~s~ielf~~d~~~~~~~~~~~-~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 128 YLLVVNHP------GSSSTVEVFKFQEEEKSLLHLKT-IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEEEECS------TTCCEEEEEEEETTTTEEEEEEE-ECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEEEECC------CCCCeEEEEEEECCCCEEEEEec-cccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 44444321 13578999998876544433322 23333567899999999998776541 1
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC-CeE--EEEeccccCc
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR-NVL--VAVIGETLTP 651 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~-~~~--~~~l~~~~~~ 651 (762)
..=++|.+..++..... ..-...+.++||||++.|.++. .+.|..|+++. ++. ...+. ..+.
T Consensus 201 ~~g~vyr~d~~~~~~~~------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~ 267 (355)
T 3sre_A 201 AWSFVTYYSPNDVRVVA------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTL 267 (355)
T ss_dssp CCEEEEEECTTCCEEEE------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSE
T ss_pred CccEEEEEECCeEEEee------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCC
Confidence 12234433332211111 1124567899999999888875 78999999863 322 22332 2344
Q ss_pred eeEEEEeC-CCCEEEEEEcCCCCeEEEEECC--CCceeeEEE
Q 040987 652 IMNMSFVG-SSEYLVATSWGSKPQLSVWNMS--KLSISWSYL 690 (762)
Q Consensus 652 v~~~~~s~-dg~~l~s~~~d~~~~v~vwd~~--~~~~~~~~~ 690 (762)
.-.+++.+ +|.+.+++..++. +|..|+-+ .++.+.++.
T Consensus 268 PDGi~vD~e~G~lwva~~~~g~-~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCHPNGM-RIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEECTTTCCEEEEEESCHH-HHHSCCTTSCCCEEEEEEE
T ss_pred CceEEEeCCCCcEEEEecCCce-EEEEECCCCCCCCEEEEEE
Confidence 67899999 5998887776651 24444433 244444444
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.75 E-value=0.016 Score=57.98 Aligned_cols=253 Identities=11% Similarity=-0.008 Sum_probs=124.2
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC---CCEEEEeec-C----
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD---GGLVALRAE-N---- 467 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-d---- 467 (762)
....++|.|+|++++ +...+.|.+++ .++. ..+.... . ..........++++|+ +..|.++.. .
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~-~~~~~~~--v--~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRL-STYAELS--V--YHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEE-EEEEECC--C--CCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc-cEeecce--E--eecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 467899999998544 55679999998 3432 2111110 0 0001246789999998 555554443 2
Q ss_pred -ceEEEEEcCCCCceeeEEeeccccc--CCCCcceeEEEEEEecCCCeEEEEeeecc----ccCCCceeEEEEEEecCC-
Q 040987 468 -YCIHFYSLLDDRGISEVQVCERNHQ--PGDDVTVVVTLVALSQDGSLMSTVDIKLA----EEGIGSLVCLKFWVSGTQ- 539 (762)
Q Consensus 468 -g~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~----~~~~~~d~~i~iwd~~~~- 539 (762)
+.|..++...+. +........... ... ......++|.|||.+.++.+.... .+.....+.|.-++.+..
T Consensus 104 ~~~v~r~~~~~~~-~~~~~~l~~~~p~~~~~--~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 104 RNQVVRLRHLGER-GVLDRVVLDGIPARPHG--LHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEEEECCCTTC--CCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred ccEEEEEEeCCCC-cCceEEEEEeCCCCCCC--CcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 678888876442 111111111000 001 112358999999976666431100 000002256666665531
Q ss_pred -----------CceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcE------EEEEcccccccccc------cC
Q 040987 540 -----------NKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDF------KVWICNDELQQKDL------QS 595 (762)
Q Consensus 540 -----------~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i------~iwd~~~~~~~~~~------~~ 595 (762)
.....+. .++ . ....++|+| ++.++++-.....+ .|.-+..+....-. ..
T Consensus 181 p~~npf~~~~~~~~~i~a----~G~-r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~ 254 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYS----LGH-R-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND 254 (352)
T ss_dssp CTTCTTTTCTTSCTTEEE----ECC-S-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CCCCcccCCCCCCccEEE----EcC-C-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence 0111111 233 2 356789999 66655554333321 23333322210000 00
Q ss_pred Cce-eeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe-------EEEEeccccCceeEEEEeCCCCEEEE
Q 040987 596 SGW-SCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV-------LVAVIGETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 596 ~~~-~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~-------~~~~l~~~~~~v~~~~~s~dg~~l~s 666 (762)
... .+.... .+......++| .+|.++++.. .+.|...+++... ....+ .....+..+++.|||.+.++
T Consensus 255 ~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 255 PRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp TTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEE
T ss_pred CCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEE
Confidence 000 000011 12234567888 5676655554 7788888776432 12222 22356899999999987776
Q ss_pred EE
Q 040987 667 TS 668 (762)
Q Consensus 667 ~~ 668 (762)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.75 E-value=0.021 Score=56.94 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=39.1
Q ss_pred cceeEEEEe-------cCCCEEEEEecCCeEEEEecCCC-ce----eccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 354 SEVSVLIFS-------SDGAYLYSGGKEGVLVVWQLDTG-KK----KFLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 354 ~~v~~~~~s-------~~g~~l~s~~~dg~i~~wd~~~~-~~----~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
.....++|. .+|+++++.-..+.|...+++.. +. ..+......+..+++.|||.++++.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 356778883 56767766666678888888753 22 1222234578999999999766654
No 311
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.69 E-value=0.00019 Score=79.17 Aligned_cols=230 Identities=9% Similarity=-0.051 Sum_probs=130.9
Q ss_pred cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCC---CceeeEEeecc
Q 040987 414 ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDD---RGISEVQVCER 489 (762)
Q Consensus 414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~---~~~~~~~~~~~ 489 (762)
..+.|+..++.+.+....+... ..+..++|++.+..|+.+. ..+.|+.+++... .....+.. .
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~-----------~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~ 450 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNL-----------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R 450 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCC-----------TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--S
T ss_pred CccceEEEeCCCCcceeeeccC-----------cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--C
Confidence 4467888888765544333222 3557899998776666553 4578888888651 11111100 0
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
. ......+++.+.+..|+.+.. ..+.|.++++........+ ... ......++++|.+.+
T Consensus 451 ~-------~~~P~glavD~~~g~LY~tD~--------~~~~I~v~d~dg~~~~~l~-----~~~-~~~P~giavDp~~g~ 509 (699)
T 1n7d_A 451 D-------IQAPDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRKTLF-----REQ-GSKPRAIVVDPVHGF 509 (699)
T ss_dssp C-------C--CCCEECCCSSSBCEECCT--------TTSCEEEEBSSSCCEEEEC-----CCS-SCCCCCEECCSSSSC
T ss_pred C-------CCCcceEEEEeeCCcEEEEec--------cCCeEEEEecCCCceEEEE-----eCC-CCCcceEEEccCCCc
Confidence 0 123456888866555555432 5578888888765432221 111 234567899997665
Q ss_pred EEEEeC-C-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEe
Q 040987 570 AVSSSY-G-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 570 l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l 645 (762)
|+.+.. . +.|.++++......... .......+.|+|+|++..|..+. .+.|..+++........+
T Consensus 510 ly~td~~~~~~I~~~~~dG~~~~~l~-----------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~ 578 (699)
T 1n7d_A 510 MYWTDWGTPAKIKKGGLNGVDIYSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578 (699)
T ss_dssp CEECCCSSSCCEEBCCSSSCCCCEES-----------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred EEEcccCCCCeEEEEeCCCCCeeEEE-----------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence 555443 2 67887777643322211 11224556899999877776664 789999999754333333
Q ss_pred cc--ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEE
Q 040987 646 GE--TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLL 691 (762)
Q Consensus 646 ~~--~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~ 691 (762)
.. .......|++..+ .++++....+. |..++..+|+.+..+..
T Consensus 579 ~~~~~~~~P~glavd~~-~lywtd~~~~~--V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 579 EDEKRLAHPFSLAVFED-KVFWTDIINEA--IFSANRLTGSDVNLLAE 623 (699)
T ss_dssp CCSSSCSSCCCCEEETT-EEEEECSTTTC--EEEEETTTEEEEECCCT
T ss_pred ecCCcCCCceEeEEECC-EEEEEeCCCCe--EEEEEccCCCceEEeec
Confidence 21 1222345666554 33334433444 99999888877665543
No 312
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.67 E-value=0.04 Score=53.30 Aligned_cols=245 Identities=12% Similarity=0.018 Sum_probs=140.0
Q ss_pred ECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC--------------CeE
Q 040987 243 ISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT--------------GRI 305 (762)
Q Consensus 243 ~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------g~v 305 (762)
|+++|..|..+. ++.|...+.+..... ++... .+--+++++.+|+..... ..|
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-----~l~~~-----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~I 90 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIH-----KLSND-----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSL 90 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCE-----EEEEE-----EEEEEEECSSEEEEEEECC------CCSSCCSEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCE-----EccCC-----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeE
Confidence 346788887553 677777777665532 22211 134567899988877543 356
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe----cCCeEEEEe
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG----KEGVLVVWQ 381 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~dg~i~~wd 381 (762)
+..++.+.+. ..+... ....|++++++|+... ....|+..+
T Consensus 91 y~i~~dg~~~-------------------------------~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~ 135 (302)
T 3s25_A 91 CRIKRNGHGS-------------------------------TVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIR 135 (302)
T ss_dssp EEEETTSCCC-------------------------------EEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred EEEeCCCCcc-------------------------------eEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence 6666655431 111111 1236788899988775 345677778
Q ss_pred cCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 382 LDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 382 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
++......+..+.. ..++++++.|+..+. ...|.+.++..+.....+.+. . ...+.|++.+
T Consensus 136 ~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~-------------~-~~~~~P~g~~ 197 (302)
T 3s25_A 136 IDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN-------------C-YKPVVLDDTN 197 (302)
T ss_dssp TTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC-------------E-EEEEEEETTE
T ss_pred CCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC-------------c-cceeeecCCE
Confidence 77655554444432 456788988887765 567888888776554444321 1 2346699998
Q ss_pred EEEeecC--ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 461 VALRAEN--YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 461 l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
|+....+ ..|..-++..... ..+. ...+ ..|+|++++|..+... ....|..-+++.
T Consensus 198 iy~t~~~~~~~I~~~~ldG~~~-~~Lt------------~~~~--~~~~~~g~~Iy~~~~~-------~~~~i~~~~~DG 255 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNINNPNP-VVLT------------EANI--EHYNVYGSLIFYQRGG-------DNPALCVVKNDG 255 (302)
T ss_dssp EEEEEGGGTTEEEEECSSSCCC-EECS------------CSCE--EEEEEETTEEEEEECS-------SSCEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEECCCCCe-EEEe------------CCCc--ceEEECCCEEEEEECC-------CCcEEEEEECCC
Confidence 8877644 3566666655432 1211 1122 3488899988876421 346777777766
Q ss_pred CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEE
Q 040987 539 QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWI 583 (762)
Q Consensus 539 ~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd 583 (762)
.... .+. ...+. .+++.+.+|+.... .+.|...+
T Consensus 256 ~~r~-~l~--------~~~~~--~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 256 TGFK-ELA--------KGEFC--NINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp CCCE-EEE--------ESCEE--EEEECSSEEEEEETTTCCEEEEE
T ss_pred CccE-Eee--------CCccc--eEEEeCCEEEEEECCCCeEEEEE
Confidence 5432 222 11233 34445666666553 24444333
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.67 E-value=0.055 Score=53.68 Aligned_cols=235 Identities=11% Similarity=0.175 Sum_probs=144.8
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
....|.|.|+..+..+...... --+.-.+|..+.||.-....+.|+|+++.+.. +... ....|.-=.|-.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALrag~~lQiFnle~K~kl-----ks~~-~~e~VvfWkWis 115 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKAGKTLQIFNIEMKSKM-----KAHT-MTDDVTFWKWIS 115 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEETTEEEEEETTTTEEE-----EEEE-CSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEecCCeEEEEchHHhhhh-----ccee-cCCCceEEEecC
Confidence 4448999999887766222222 23556789999998777999999999988743 2222 233555556654
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc----cceeEEEEecCCCE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP----SEVSVLIFSSDGAY 367 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~s~~g~~ 367 (762)
+. .|+.-+ +..|+-|++.+.. .+.+.+..|. ..|..-..+++.++
T Consensus 116 ~~-~l~lVT-~taVyHWsi~~~s-----------------------------~P~kvFdR~~~L~~~QIInY~~d~~~kW 164 (494)
T 1bpo_A 116 LN-TVALVT-DNAVYHWSMEGES-----------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKW 164 (494)
T ss_dssp TT-EEEEEC-SSEEEEEESSSSC-----------------------------CCEEEEECCGGGTTCEEEEEEECTTSSE
T ss_pred CC-eEEEEc-CCeeEEecccCCC-----------------------------CchhheecchhcccceEEEEEECCCCCe
Confidence 44 344443 5579999986532 2233443332 35666677888888
Q ss_pred EEEEec-------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCC---CeEEEEec---CCcEEEEEcCCc-eEEEEEc
Q 040987 368 LYSGGK-------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP---SLSSISCA---DNQVHLLKMPSM-EIIRSIS 433 (762)
Q Consensus 368 l~s~~~-------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~---d~~i~i~d~~~~-~~~~~~~ 433 (762)
++..+- .|.+.+|..+.+..+.+.+|......+.+..+. +.+..+.. .+.++|.++... .--..+.
T Consensus 165 ~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~ 244 (494)
T 1bpo_A 165 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (494)
T ss_dssp EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC
T ss_pred EEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc
Confidence 775442 378999999988877777776544444433221 23333333 267888887532 0000110
Q ss_pred cCCCCCC-CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 434 GIKLPCP-LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 434 ~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
.....+. .++...+...++.+++.-..+...+.-|.+++||+.++..+..-...
T Consensus 245 kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs 299 (494)
T 1bpo_A 245 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (494)
T ss_dssp CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc
Confidence 0000000 11222355678889998888999999999999999999887765543
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.67 E-value=0.043 Score=54.15 Aligned_cols=195 Identities=12% Similarity=0.071 Sum_probs=114.1
Q ss_pred eeeccccceeEEEEecCCCEEEEEe------------cCCeEEEEecCC--Cceec--cCC-----CCCCeEEEEeCC--
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGG------------KEGVLVVWQLDT--GKKKF--LPR-----IGSPLLYFTESP-- 404 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~------------~dg~i~~wd~~~--~~~~~--~~~-----~~~~v~~~~~s~-- 404 (762)
.+.+-......+...|+|..+++++ .+|.|.++|.++ ++... ... ..-....+.+.+
T Consensus 44 ~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 44 LVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp ECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred EeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence 3333233456677888875555441 689999999874 33322 221 123566677644
Q ss_pred CCC-eEEEEec---CCcEEEEEcCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-----------
Q 040987 405 DPS-LSSISCA---DNQVHLLKMPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA----------- 465 (762)
Q Consensus 405 ~~~-~l~~~~~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------- 465 (762)
++. +|+++.. +..+.+|++... ..+..+.+.. . ....++++.++|++.++..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~--~-------~~pND~~v~~~G~fyvt~~~~ftd~~~~~~ 194 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL--L-------PSVNDIVAVGPEHFYATNDHYFIDPYLKSW 194 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTT--C-------SSEEEEEEEETTEEEEEESCSCSSHHHHHH
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCC--C-------CCCceEEEeCCCCEEecCCcEeCCcccccc
Confidence 454 3444432 456777776542 2233444322 1 5678999999998777653
Q ss_pred ------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 466 ------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 466 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
..|.|+.+|. ++ ...+... -...+.++|+||++.|..+.. ..+.|..|++...
T Consensus 195 e~~~~~~~g~vyr~d~--~~-~~~~~~~----------l~~pNGia~spDg~~lYvadt--------~~~~I~~~~~~~~ 253 (355)
T 3sre_A 195 EMHLGLAWSFVTYYSP--ND-VRVVAEG----------FDFANGINISPDGKYVYIAEL--------LAHKIHVYEKHAN 253 (355)
T ss_dssp HHHTTCCCEEEEEECT--TC-CEEEEEE----------ESSEEEEEECTTSSEEEEEEG--------GGTEEEEEEECTT
T ss_pred hhhccCCccEEEEEEC--Ce-EEEeecC----------CcccCcceECCCCCEEEEEeC--------CCCeEEEEEECCC
Confidence 1255666655 22 2222111 234789999999998888763 5679999999753
Q ss_pred CceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCC
Q 040987 540 NKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYG 576 (762)
Q Consensus 540 ~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~d 576 (762)
........ + .. .+..-.+++.+ +|++.+++..+
T Consensus 254 g~l~~~~~--~-~~-~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 254 WTLTPLRV--L-SF-DTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SCEEEEEE--E-EC-SSEEEEEEECTTTCCEEEEEESC
T ss_pred CcEecCEE--E-eC-CCCCceEEEeCCCCcEEEEecCC
Confidence 33222221 1 12 34567889998 58887766544
No 315
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.57 E-value=0.044 Score=53.02 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=124.5
Q ss_pred CCCCeEEEEec--CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC--------------
Q 040987 404 PDPSLSSISCA--DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-------------- 467 (762)
Q Consensus 404 ~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------------- 467 (762)
.++..|+.... ++.|...+..... ...+.. . .+--+++++.+|..+...
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~------------~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~ 87 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN------------D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDR 87 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE------------E--EEEEEEECSSEEEEEEECC------CCSSCCS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC------------C--ceeeEEEcCCEEEEEECCCCcccccceeccCC
Confidence 46666666542 4556666654333 333322 1 234568889988887653
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
..|+..++...+.. .+. .. ....|++++++|+..... ......|...++...... .+.
T Consensus 88 ~~Iy~i~~dg~~~~-~l~------------~~--~~~~~s~~g~~Iy~~~~~-----~~~~~~Iy~~~~dGs~~~-~lt- 145 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLD------------PD--PCIYASLIGNYIYYLHYD-----TQTATSLYRIRIDGEEKK-KIK- 145 (302)
T ss_dssp EEEEEEETTSCCCE-EEE------------CS--CEEEEEEETTEEEEEEES-----SSSCEEEEEEETTSCCCE-EEE-
T ss_pred CeEEEEeCCCCcce-Eee------------cC--CccEEEEeCCEEEEEeec-----CCCCceEEEEECCCCCeE-EEe-
Confidence 46777777665422 111 11 123788899998877510 004567777777754432 231
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
.+ .+ .+++|+++.|+..+. ...|.+.++.++....... +... ..++|++++|+..
T Consensus 146 ----~~---~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--------------~~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 146 ----NH---YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--------------CNCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp ----SS---CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--------------SCEE-EEEEEETTEEEEE
T ss_pred ----CC---Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--------------CCcc-ceeeecCCEEEEE
Confidence 12 22 457888998887765 5678888887665433321 1222 3466999999876
Q ss_pred c---CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 627 A---ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 627 ~---d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
. ...|..-+++.... ..|.. ..+ ..|+|++++|..++..+...|..-+++...
T Consensus 202 ~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 5 24787778876653 34432 223 448888999987754333346666766543
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.55 E-value=0.064 Score=52.65 Aligned_cols=255 Identities=11% Similarity=0.018 Sum_probs=124.1
Q ss_pred ccCCCceEEEECCCCCEEEEEe-CCeEEEEEccCchhhhheee---eeeeccCcCeEEEEEcCC---CcEEEEe---ecC
Q 040987 233 AEMKEPQVITISSSGKYFGIRK-QRKLLIWKVPDVEAERVVMR---KITLHHTKKLTVLAFHPT---QRIVAAG---DVT 302 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~~-~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~---~~~l~~~---~~d 302 (762)
..-...+.++|.|||+++++.. .+.|++++..+++.. .+. ............|+|+|+ +.+|... ..+
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~--~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT--ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe--eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3355778999999999888876 899999986655432 111 122234567899999996 3344432 234
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccc-cceeee-ccccceeEEEEecCCCEEEEEec-------
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD-LCTTWH-WHPSEVSVLIFSSDGAYLYSGGK------- 373 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~------- 373 (762)
+.|.-|.......-. . ...+.+ .+..+. .....-..+.|.|||.+.++.+.
T Consensus 107 ~~v~R~~~~~~~~~~-----------------~---~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~ 166 (347)
T 3das_A 107 NRIVRMLYDEKKPSG-----------------E---QLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLS 166 (347)
T ss_dssp EEEEEEEBCTTSCTT-----------------C---CBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGT
T ss_pred CEEEEEEeCCCCccc-----------------c---cCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccc
Confidence 555555554321000 0 000000 011111 11123457999999987777542
Q ss_pred ------CCeEEEEecCCCc---------eeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEE--EEccC
Q 040987 374 ------EGVLVVWQLDTGK---------KKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIR--SISGI 435 (762)
Q Consensus 374 ------dg~i~~wd~~~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~--~~~~~ 435 (762)
.|.|.-.+.+..- .+....+. ....++|+|+|.+.++-. .++.-.|-.+..+.... ...+.
T Consensus 167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~ 245 (347)
T 3das_A 167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGK 245 (347)
T ss_dssp TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSS
T ss_pred cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCC
Confidence 2455555554320 11222222 345688888776554421 12211222222211000 00000
Q ss_pred C--CCCCCCC----cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 436 K--LPCPLPE----EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 436 ~--~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
. .....+. .+......++|. ++..+......+.|....+.......+......+ ....+..++..||
T Consensus 246 ~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~------~~gR~~dv~~~pD 318 (347)
T 3das_A 246 GGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG------EYGRLRTVAPAGG 318 (347)
T ss_dssp CCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTT------TSSCEEEEEEEET
T ss_pred CCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecC------CCCCccEEEECCC
Confidence 0 0000000 001234566665 3555555555566666666544321111111111 1457999999999
Q ss_pred CCeEEEEe
Q 040987 510 GSLMSTVD 517 (762)
Q Consensus 510 g~~l~~~~ 517 (762)
|.++++.+
T Consensus 319 G~lyv~td 326 (347)
T 3das_A 319 DKLWLVTS 326 (347)
T ss_dssp TEEEEEEC
T ss_pred CcEEEEEc
Confidence 98777765
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.54 E-value=0.085 Score=52.59 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=122.8
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---c----CCCCCCeEEEEeCCC---CCeEEEEec--------
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---L----PRIGSPLLYFTESPD---PSLSSISCA-------- 414 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~----~~~~~~v~~~~~s~~---~~~l~~~~~-------- 414 (762)
-.....++|.|+|+.|+.+...|.|++++........ + .........++++|+ +..|+++..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 4456899999999834455567999999854321111 1 112345789999996 555554432
Q ss_pred CCcEEEEEcCCc--e--EEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-------------CceEEEEEcC
Q 040987 415 DNQVHLLKMPSM--E--IIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-------------NYCIHFYSLL 476 (762)
Q Consensus 415 d~~i~i~d~~~~--~--~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~ 476 (762)
...|..++.... . ..+. +..... ..... .....++|.|||.+.++.+. .|.|.-++..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~--~~~~~--h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPK--LSTGN--HFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSC--CBSSS--CCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCC--CCCCc--ccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666532 1 1111 222110 00000 22467999999976555433 2456666654
Q ss_pred CCC------------ceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCc--
Q 040987 477 DDR------------GISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-- 541 (762)
Q Consensus 477 ~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-- 541 (762)
..- ....+... ......++|+| +|+++++-. . .++.=.|.-+..+..
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G----------~rnp~gl~~d~~~g~l~~~d~-g-------~~~~dei~~i~~G~nyG 234 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYG----------IRNPQGMAMNPWSNALWLNEH-G-------PRGGDEINIPQKGKNYG 234 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEEC----------CSEEEEEEEETTTTEEEEEEE-C-------SBSCEEEECCCTTCBCC
T ss_pred CCCCCCCCCcCCCCCCccEEEEc----------CcCccceEEECCCCCEEEEec-C-------CCCCcEEeEeccCCcCC
Confidence 320 01111111 23478899999 565554432 1 111111111111100
Q ss_pred ------------------------eeEEEEEeecCCCCCceEEEEEcC-------CCCeEEEEeCCCcEEEEEccccccc
Q 040987 542 ------------------------EFTLSTIVYEPHRDAGISAVAFHP-------NRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 542 ------------------------~~~~~~~~~~~h~~~~v~~~~~sp-------d~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
........+.+ ......++|.. +|+++++.-..+.|...++..++..
T Consensus 235 wp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 235 WPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKD--SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT 312 (353)
T ss_dssp TTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESS--CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE
T ss_pred CCCccCCCCCCCCccCcccCCCCCCccCCeEEeCC--CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe
Confidence 00000011122 23566777764 4666666656677777777654322
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
... .........+..+++.|||.+.++..
T Consensus 313 ~~~--------~~~~~~~~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 313 EDG--------RILTDRGQRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp EEE--------EESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred eeE--------EcccCCCCceeEEEECCCCcEEEEEe
Confidence 111 11112235788999999998766543
No 318
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.45 E-value=0.1 Score=51.22 Aligned_cols=250 Identities=16% Similarity=0.036 Sum_probs=127.1
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-------CCCCCCeEEEEeCCC---CCeEEEE-e--
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-------PRIGSPLLYFTESPD---PSLSSIS-C-- 413 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-------~~~~~~v~~~~~s~~---~~~l~~~-~-- 413 (762)
..+...-...+.++|.|||+.+++-...|.|++++..+++...+ .........++++|+ +..|++. +
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 34444455678999999998777665589999998766654221 122456889999996 3444443 2
Q ss_pred cCCcEEEEEcCCce--------EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-------------CceEEE
Q 040987 414 ADNQVHLLKMPSME--------IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-------------NYCIHF 472 (762)
Q Consensus 414 ~d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~i 472 (762)
.++.|.-|....+. ....+..... .. ......++|.|||.+.++.+. .|.|.-
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~----~~--~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR 178 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK----GV--IHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILR 178 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC----CS--SCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCC----CC--CccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence 34556666554311 1111111110 00 123467999999987776542 244444
Q ss_pred EEcCCCCcee-----eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce-----
Q 040987 473 YSLLDDRGIS-----EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE----- 542 (762)
Q Consensus 473 ~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----- 542 (762)
++... +... .......+ -.....++|+|+|.+.++-.. .++.-.|.-+..+...
T Consensus 179 i~~dG-~ip~~nPf~~~~i~a~G-------~RNp~Gla~dp~G~L~~~d~g--------~~~~deln~i~~G~nyGwP~~ 242 (347)
T 3das_A 179 MTPDG-EPAPGNPFPGSPVYSYG-------HRNVQGLAWDDKQRLFASEFG--------QDTWDELNAIKPGDNYGWPEA 242 (347)
T ss_dssp ECTTS-SBCTTCSSTTCCEEEBC-------CSBCCEEEECTTCCEEEEECC--------SSSCEEEEEECTTCBCCTTTC
T ss_pred EeCCC-CccCCCCCCCCeEEeeC-------CCCcceEEECCCCCEEEEecC--------CCCCceeeEEcCCCEecCCcc
Confidence 44432 1000 00001111 123567899998876655431 2211122222222110
Q ss_pred --------eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEE
Q 040987 543 --------FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA 614 (762)
Q Consensus 543 --------~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 614 (762)
.......+.++ ......++|. +|.+++..-..+.|....+......... ..........+..+
T Consensus 243 ~g~~~~~~~~~P~~~~~~~-~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~-------e~~l~~~~gR~~dv 313 (347)
T 3das_A 243 EGKGGGSGFHDPVAQWSTD-EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADP-------QAFLEGEYGRLRTV 313 (347)
T ss_dssp CSSCCCTTCCCCSEEECTT-TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCC-------EEESTTTSSCEEEE
T ss_pred cCCCCCccccCCcEecCCC-CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecce-------EEeecCCCCCccEE
Confidence 00000111122 2345667776 4555555545556666666544321110 11122334688999
Q ss_pred EEcCCCcEEEEEc
Q 040987 615 AFSADGSVLAVAA 627 (762)
Q Consensus 615 ~~s~dg~~la~~~ 627 (762)
+..|||.++++.+
T Consensus 314 ~~~pDG~lyv~td 326 (347)
T 3das_A 314 APAGGDKLWLVTS 326 (347)
T ss_dssp EEEETTEEEEEEC
T ss_pred EECCCCcEEEEEc
Confidence 9999998776654
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.42 E-value=0.052 Score=54.15 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=122.9
Q ss_pred CCCceEEEECCCCC-EEEEEeCCeEEEEEccCchhhh-heeeeeeeccCcCeEEEEEcCC---CcEEEEee-c-------
Q 040987 235 MKEPQVITISSSGK-YFGIRKQRKLLIWKVPDVEAER-VVMRKITLHHTKKLTVLAFHPT---QRIVAAGD-V------- 301 (762)
Q Consensus 235 ~~~v~~~~~spdg~-~la~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~-~------- 301 (762)
-.....++|.|||+ ++++...+.|++++........ ................++|+|+ +.+|.... .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34678999999999 8877778999999854321100 0000111223456789999996 44454442 2
Q ss_pred CCeEEEEeccCCc-eeecccccccccccccccCCCCcccCCccccceee-----eccccceeEEEEecCCCEEEEEec--
Q 040987 302 TGRILIWRGFGDR-TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW-----HWHPSEVSVLIFSSDGAYLYSGGK-- 373 (762)
Q Consensus 302 dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s~~g~~l~s~~~-- 373 (762)
...|..++..... .+.... ..+..+ ..|. -..++|.|||.+.++.+.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~-----------------------~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~ 151 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFR-----------------------TVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENN 151 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEE-----------------------EEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTT
T ss_pred eeEEEEEEECCCCCCCCceE-----------------------EEEEECCCCCCCccc--CccEEECCCCcEEEEECCCC
Confidence 2345555554321 110000 000111 1132 356999999966555433
Q ss_pred -----------CCeEEEEecCCCce--------------eccCCCCCCeEEEEeCCCCCeEEEEecCC--cEEEEEcCCc
Q 040987 374 -----------EGVLVVWQLDTGKK--------------KFLPRIGSPLLYFTESPDPSLSSISCADN--QVHLLKMPSM 426 (762)
Q Consensus 374 -----------dg~i~~wd~~~~~~--------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~d~~~~ 426 (762)
.|.|.-++.+..-. +....+ .....++|.|+...|+++.... .=.|.-+..+
T Consensus 152 ~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G 230 (353)
T 2g8s_A 152 QRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKG 230 (353)
T ss_dssp CGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTT
T ss_pred CCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccC
Confidence 24677777654210 111111 2367788998433444443321 1122222221
Q ss_pred eEEE--------EEccC---------CCCCCCCC---cccCceeeEEEeC-------CCCEEEEeecCceEEEEEcCCCC
Q 040987 427 EIIR--------SISGI---------KLPCPLPE---EYKGLCRDIAFNH-------DGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 427 ~~~~--------~~~~~---------~~~~~~~~---~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
.... .+.+. ......+. .+......++|.. ++++++.....+.|...++..++
T Consensus 231 ~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~ 310 (353)
T 2g8s_A 231 KNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDK 310 (353)
T ss_dssp CBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTE
T ss_pred CcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCe
Confidence 1100 00000 00000000 0113456677764 46666666677788888877543
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
....... ... ....+..+++.|||.++++.
T Consensus 311 ~~~~~~~-~~~------~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 311 VTEDGRI-LTD------RGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEEEE-SGG------GCCCEEEEEECTTSCEEEEE
T ss_pred EeeeEEc-ccC------CCCceeEEEECCCCcEEEEE
Confidence 2222111 111 03468999999999876654
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.35 E-value=0.041 Score=53.61 Aligned_cols=240 Identities=8% Similarity=0.024 Sum_probs=121.0
Q ss_pred CCCeEEEEe-cC-----CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEE
Q 040987 405 DPSLSSISC-AD-----NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFY 473 (762)
Q Consensus 405 ~~~~l~~~~-~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~ 473 (762)
++..++.|+ .+ ..+.+||..+.+-.. +.... . ......+...+++.++.|+.+ ..+.+|
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p--~-------~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSIT--R-------KRRYVASVSLHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCS--S-------CCBSCEEEEETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCC--h-------hhccccEEEECCEEEEEcCCCCCccCceEEEE
Confidence 445555555 22 368889988765332 22111 0 111112223456777777754 468999
Q ss_pred EcCCCCc--eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 474 SLLDDRG--ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 474 d~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
|..+.+. -..+..... + ......+. -+++.++.++.. +......+.+||+.+.+-.. +.. .
T Consensus 84 d~~~~~~~~W~~~~~~p~---~----r~~~~~~~--~~~~lyv~GG~~----~~~~~~~~~~~d~~~~~W~~-~~~---~ 146 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPMNV---R----RGLAGATT--LGDMIYVSGGFD----GSRRHTSMERYDPNIDQWSM-LGD---M 146 (301)
T ss_dssp ETTCCTTCCCEEECCCSS---C----CBSCEEEE--ETTEEEEECCBC----SSCBCCEEEEEETTTTEEEE-EEE---C
T ss_pred ECCCCCCCeeEECCCCCC---C----ccceeEEE--ECCEEEEEcccC----CCcccceEEEEcCCCCeEEE-CCC---C
Confidence 9987651 111111100 0 11111122 267777777632 11123578899987764322 111 1
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCC-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYG-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
+.....-..+.+ ++++++.|+.+ ..+.+||+.+.+-. ..............+. -++++++.|
T Consensus 147 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---------~~~~~p~~r~~~~~~~--~~~~i~v~G 213 (301)
T 2vpj_A 147 QTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT---------NVTPMATKRSGAGVAL--LNDHIYVVG 213 (301)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE---------EECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred CCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE---------eCCCCCcccccceEEE--ECCEEEEEe
Confidence 110112222222 67788887754 35888888765432 2211111112222223 267777777
Q ss_pred c-C-----CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCCc
Q 040987 627 A-E-----TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKLS 684 (762)
Q Consensus 627 ~-d-----~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~~ 684 (762)
+ + ..+.+||+.+.+-...-..........+..-++++++.++.++. ..+.+||+++.+
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 5 3 46899999987654332111112222222337788888876642 247889988765
No 321
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.25 E-value=0.15 Score=49.00 Aligned_cols=167 Identities=8% Similarity=0.005 Sum_probs=104.2
Q ss_pred CCceEEEECCCCCEE-EEE-eCCeEEEEEccCchhhhheeeeeeecc-------CcCeEEEEE---cCCCcEEEEee---
Q 040987 236 KEPQVITISSSGKYF-GIR-KQRKLLIWKVPDVEAERVVMRKITLHH-------TKKLTVLAF---HPTQRIVAAGD--- 300 (762)
Q Consensus 236 ~~v~~~~~spdg~~l-a~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~v~~~~~---sp~~~~l~~~~--- 300 (762)
....+++|.+....+ ++. ..++|..|+...+... ...... ...+..+.| .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-----~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-----NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-----EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-----EEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 345678998755555 444 5899999998755432 111111 113578999 68888777543
Q ss_pred ----------cCCeEEEEecc---CCceeecccccccccccccccCCCCcccCCccccceeeec-cccceeEEEEecCCC
Q 040987 301 ----------VTGRILIWRGF---GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW-HPSEVSVLIFSSDGA 366 (762)
Q Consensus 301 ----------~dg~v~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~ 366 (762)
.+..|..+|+. +++......-.... ...+...+ -......++..++|+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~------------------~~~~~~~g~~~~~~nDvavD~~Gn 149 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQ------------------DEFEKKAGKRPFGVVQSAQDRDGN 149 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHH------------------HHHHHHHSSCCEEEEEEEECTTSC
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccc------------------ccccccccccccCCceeEECCCCC
Confidence 25779999987 44432210000000 00000000 112478899999999
Q ss_pred EEEEEecC-CeEEEEecCCCceecc------CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 367 YLYSGGKE-GVLVVWQLDTGKKKFL------PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 367 ~l~s~~~d-g~i~~wd~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..++++.. +.|...+.+....... .........|++.|+|+.|++....+.+..+|+..
T Consensus 150 aYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 150 SYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99988888 8888888765433211 11122367899999999999887799999999884
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.19 E-value=0.11 Score=50.71 Aligned_cols=236 Identities=7% Similarity=-0.048 Sum_probs=119.9
Q ss_pred EEEEEec--CCeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEEecC----CcEEEEEcCCceEEEEEccCCC
Q 040987 367 YLYSGGK--EGVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSISCAD----NQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 367 ~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
.++.|+. ...+.+||..+.+...+...+. ....+. .+++.++.|+.+ ..+.+||..+.+-...-. ...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~-~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG-PPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC-CSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC-CCc
Confidence 4445554 3578999999887755433322 122222 366677777654 578899998865433211 110
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecC------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
......+..-+++.++.|+.+ ..+.+||..+.+-.. +... ..+. ..... ..-+++
T Consensus 91 ---------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~---p~~r----~~~~~--~~~~~~ 151 (306)
T 3ii7_A 91 ---------PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT-KPSM---LTQR----CSHGM--VEANGL 151 (306)
T ss_dssp ---------CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-ECCC---SSCC----BSCEE--EEETTE
T ss_pred ---------cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-CCCC---cCCc----ceeEE--EEECCE
Confidence 111111222367777887765 468899988764211 1111 0010 11111 123677
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-----CcEEEEEccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-----GDFKVWICND 586 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-----g~i~iwd~~~ 586 (762)
.++.++.............+.+||+.+.+-.. +.. .+.....-..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~---~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCP---MIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECC---CSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCC---ccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 77777632110000004568889988764221 111 1110111122222 66777777653 3588888876
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C-----CeEEEEeCCCCeE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E-----TVITLWDPDRNVL 641 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d-----~~i~iwd~~~~~~ 641 (762)
.+-. ..............+.+ ++++++.|+ + ..+.+||..+.+-
T Consensus 226 ~~W~---------~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 226 NEWK---------MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TEEE---------ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CcEE---------ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 5432 22112222222233333 777877776 3 5789999988743
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.16 E-value=0.29 Score=50.29 Aligned_cols=299 Identities=9% Similarity=0.005 Sum_probs=164.1
Q ss_pred EEEEecCCeEEEEecCCCceeccCC-C-------------------------CCCe--EEEEeC---CCCCeEEEEec-C
Q 040987 368 LYSGGKEGVLVVWQLDTGKKKFLPR-I-------------------------GSPL--LYFTES---PDPSLSSISCA-D 415 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~~~~~~~-~-------------------------~~~v--~~~~~s---~~~~~l~~~~~-d 415 (762)
+.||+..|+|+++-+-+++...... . .+.. ..+++. .||++|++-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5677788888888877766522110 0 0111 122331 36788887764 5
Q ss_pred CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe--CCCCEEEEeecC-------ceE------------EEEE
Q 040987 416 NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN--HDGGLVALRAEN-------YCI------------HFYS 474 (762)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d-------g~i------------~i~d 474 (762)
..|-..+++..++-+.+.-... ..+..+.|- |+..+++.+++. |.. ...|
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~---------~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNV---------QAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTC---------SCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred cceEEEECCcEeeceeEeCCCC---------cCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 5788889998888777654332 466777776 677788777642 221 0111
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc------CCCcee-------------------
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE------GIGSLV------------------- 529 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~------~~~~d~------------------- 529 (762)
..+.+....+.. ..........++|++.++.+.+.... ......
T Consensus 224 ~~tm~v~~Qv~v-----------~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~ 292 (638)
T 3sbq_A 224 AETMEMAFQVIV-----------DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDF 292 (638)
T ss_dssp TTTCSEEEEEEE-----------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCC
T ss_pred CCccEEEEEEEc-----------CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCe
Confidence 111111111111 11122345577788887776431000 000111
Q ss_pred ------EEEEEEecC----CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccC-Cc
Q 040987 530 ------CLKFWVSGT----QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQS-SG 597 (762)
Q Consensus 530 ------~i~iwd~~~----~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~ 597 (762)
.+.+.|.+. +.....+-.. ......+.++|||++++.++ .+.++.++|+..-.....-.. ..
T Consensus 293 ~~~~g~gv~ViD~~~~~~~~~~~~~~iP~------pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~ 366 (638)
T 3sbq_A 293 ITLGDSKTPVLDGRKKDGKDSKFTRYVPV------PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADP 366 (638)
T ss_dssp BCCTTCCCCEEECSCBTTBCCSSEEEEEE------SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCG
T ss_pred EEECCCCeeEEccccccccCCceEEEEeC------CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCc
Confidence 355555554 2221111111 23344688999999988776 467899999975322110000 00
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC----------eEEEEeccccCceeEEEE------eCC
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN----------VLVAVIGETLTPIMNMSF------VGS 660 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~----------~~~~~l~~~~~~v~~~~~------s~d 660 (762)
-.+......-.......+|.++|....+-. |..|..|++... ..+..+..|-.+ -.+.- .||
T Consensus 367 ~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~d 445 (638)
T 3sbq_A 367 RDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEAD 445 (638)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCC
T ss_pred ccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCC
Confidence 000000111345677899999994444445 999999998753 456666666543 33433 579
Q ss_pred CCEEEEEE---cCCC--------CeEEEEECCCCceeeEEEEee
Q 040987 661 SEYLVATS---WGSK--------PQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 661 g~~l~s~~---~d~~--------~~v~vwd~~~~~~~~~~~~~~ 693 (762)
|++|++.. .|.- -.-.+.|+...++...+..+.
T Consensus 446 Gk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~D~P~ 489 (638)
T 3sbq_A 446 GKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVHDGPT 489 (638)
T ss_dssp SCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred ccEEEEecccccccCcCCCCCCCCcceeEecCCCceEEEecCCC
Confidence 99999985 3432 124788887777666555554
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.08 E-value=0.089 Score=51.30 Aligned_cols=237 Identities=10% Similarity=0.009 Sum_probs=119.3
Q ss_pred CCeEEEEec--CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ceEEEEEcCCCC
Q 040987 406 PSLSSISCA--DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YCIHFYSLLDDR 479 (762)
Q Consensus 406 ~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~ 479 (762)
+.+++.|+. ...+.+||..+.+-... .... . ......+..-+++.++.|+.+ ..+.+||..+.+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~-~~~p--~-------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDI-RCPF--E-------KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEEC-CCCS--C-------CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecC-CCCC--c-------ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 344555554 35789999987654322 1111 0 111112222366777787754 678899988764
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~ 559 (762)
-.. +..... + ......+ .-+++.++.|+.+. +......+.+||..+.+-.. +.. .+.....-.
T Consensus 82 W~~-~~~~p~---~----r~~~~~~--~~~~~iyv~GG~~~---~~~~~~~~~~~d~~~~~W~~-~~~---~p~~r~~~~ 144 (306)
T 3ii7_A 82 WYS-KLGPPT---P----RDSLAAC--AAEGKIYTSGGSEV---GNSALYLFECYDTRTESWHT-KPS---MLTQRCSHG 144 (306)
T ss_dssp EEE-EECCSS---C----CBSCEEE--EETTEEEEECCBBT---TBSCCCCEEEEETTTTEEEE-ECC---CSSCCBSCE
T ss_pred EEE-CCCCCc---c----ccceeEE--EECCEEEEECCCCC---CCcEeeeEEEEeCCCCceEe-CCC---CcCCcceeE
Confidence 221 111110 0 1111111 22677777776320 11123568889988764322 111 111011112
Q ss_pred EEEEcCCCCeEEEEeC---------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C-
Q 040987 560 AVAFHPNRRAAVSSSY---------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E- 628 (762)
Q Consensus 560 ~~~~spd~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d- 628 (762)
.+.+ ++++++.|+. -..+.+||..+..- ............-..+.+ ++++++.|+ +
T Consensus 145 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W---------~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 211 (306)
T 3ii7_A 145 MVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW---------TELCPMIEARKNHGLVFV--KDKIFAVGGQNG 211 (306)
T ss_dssp EEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEE---------EEECCCSSCCBSCEEEEE--TTEEEEECCEET
T ss_pred EEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeE---------EECCCccchhhcceEEEE--CCEEEEEeCCCC
Confidence 2222 6677777763 34588888876533 222211111122222222 677777775 2
Q ss_pred ----CeEEEEeCCCCeEEEE--eccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCCc
Q 040987 629 ----TVITLWDPDRNVLVAV--IGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKLS 684 (762)
Q Consensus 629 ----~~i~iwd~~~~~~~~~--l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~~ 684 (762)
..+.+||..+.+-... +.........+.+ ++++++.++.++. ..+.+||..+.+
T Consensus 212 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 4689999998754332 2222222222223 7788888886532 348889988764
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.00 E-value=0.088 Score=60.60 Aligned_cols=233 Identities=12% Similarity=0.175 Sum_probs=138.5
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
....|.|.|+..+..+......- -+.-.+|..+.||.-....+.|||+.+.... +.. ....+|.-=.|-.
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~A----dsAIMnP~~~iiALrag~~lQiFnl~~k~kl-----ks~-~~~e~VvfWkWis 115 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKAGKTLQIFNIEMKSKM-----KAH-TMTDDVTFWKWIS 115 (1630)
T ss_pred CCceEEEEECCCCCCcccccccc----hhhccCCCcceEEEecCCeEEEeehHHhhhh-----ccc-ccCCCceEEEecC
Confidence 34488999998877652222222 2345678889998777899999999988754 222 1234566666664
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc----ccceeEEEEecCCCE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH----PSEVSVLIFSSDGAY 367 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~ 367 (762)
+.. |+..+ +..|.-|++.+.. .+.+.+..| ...|..-..+++.++
T Consensus 116 ~~~-l~lVT-~~aVyHW~~~~~s-----------------------------~P~k~fdR~~~L~~~QIinY~~d~~~kW 164 (1630)
T 1xi4_A 116 LNT-VALVT-DNAVYHWSMEGES-----------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKW 164 (1630)
T ss_pred CCe-eEEEc-CCeEEEeccCCCC-----------------------------ccHHHHhcchhcccCeeEEeeeCCCCCe
Confidence 443 44332 4579999996532 223333333 345666677888888
Q ss_pred EEEEe-------cCCeEEEEecCCCceeccCCCCCCeEEEEeC--CC-CCeEEEEec---CCcEEEEEcCCc-eEEEEEc
Q 040987 368 LYSGG-------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTES--PD-PSLSSISCA---DNQVHLLKMPSM-EIIRSIS 433 (762)
Q Consensus 368 l~s~~-------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s--~~-~~~l~~~~~---d~~i~i~d~~~~-~~~~~~~ 433 (762)
++..| -.|.+.+|..+.+..+.+.+|......+... +. ...+..+.. .+.++|.++... .-...+.
T Consensus 165 ~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~ 244 (1630)
T 1xi4_A 165 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (1630)
T ss_pred EEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc
Confidence 77544 2478999999887766666655443333331 11 122222221 267888887542 1001111
Q ss_pred cCCCCCC-CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEE
Q 040987 434 GIKLPCP-LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQ 485 (762)
Q Consensus 434 ~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 485 (762)
.....+. .++.......++..++.-..+...+.-|.+.+||+.++..+..-.
T Consensus 245 kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 245 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred cccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 1111111 111223445678888877788888999999999999998776544
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.98 E-value=0.05 Score=54.00 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=97.1
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeec-ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCE-RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
....+|..++++ .++.||.-++.....-+.+.... .. -..+..+..+|+|++||..+ +..|
T Consensus 27 ~~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~-------f~~i~qlvlSpsG~lLAl~g----------~~~V 88 (452)
T 3pbp_A 27 FSSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLV-------LDDTFHVISSTSGDLLCLFN----------DNEI 88 (452)
T ss_dssp EEETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCC-------CCTTCEEEECTTSSEEEEEC----------SSEE
T ss_pred EEEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccc-------cCceeEEEECCCCCEEEEec----------CCeE
Confidence 344566666655 45778888887554333333221 00 12467799999999999984 5688
Q ss_pred EEEEecCCCc-e--------eEEEEEeecCC---CCCceEEEEEcCC---CCeEEEEeCCCcEEEEEccccccccc-ccC
Q 040987 532 KFWVSGTQNK-E--------FTLSTIVYEPH---RDAGISAVAFHPN---RRAAVSSSYGGDFKVWICNDELQQKD-LQS 595 (762)
Q Consensus 532 ~iwd~~~~~~-~--------~~~~~~~~~~h---~~~~v~~~~~spd---~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~ 595 (762)
.|-.+..+.. . .........+- ....|..+.|+|- +..|++-..|+.|++||+........ +..
T Consensus 89 ~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k 168 (452)
T 3pbp_A 89 FVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNK 168 (452)
T ss_dssp EEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESC
T ss_pred EEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhc
Confidence 8888773321 0 01111111110 1467999999995 55899999999999999986322111 110
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEE--Ec-CCeEEEE
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAV--AA-ETVITLW 634 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~--~~-d~~i~iw 634 (762)
... ..........|.+++|+++|-.|.+ .+ +|.|+-.
T Consensus 169 -~~~-~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 169 -PNN-SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp -CCS-EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred -ccc-ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 000 0112234478899999998765555 44 6777643
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.98 E-value=0.11 Score=50.39 Aligned_cols=228 Identities=11% Similarity=0.081 Sum_probs=111.3
Q ss_pred CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCCceeeEEeeccc
Q 040987 416 NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
..+..||..+.+-.. +.....+ . .. .+++ .-+++.++.|+.+ ..+.+||..+.+-.. +....
T Consensus 30 ~~~~~~d~~~~~W~~-~~~~p~~----r---~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p-- 96 (302)
T 2xn4_A 30 RSVECYDFKEERWHQ-VAELPSR----R---CR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMR-- 96 (302)
T ss_dssp CCEEEEETTTTEEEE-ECCCSSC----C---BS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCS--
T ss_pred CcEEEEcCcCCcEeE-cccCCcc----c---cc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceee-CCCCC--
Confidence 357888888765332 2211100 0 11 1222 2367777777754 358889987653211 11110
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
.+ ......+ .-+++.++.|+.. +......+.+||+.+.+-.. +.. .+.....-..+.+ +++++
T Consensus 97 -~~----r~~~~~~--~~~~~iyv~GG~~----~~~~~~~~~~~d~~~~~W~~-~~~---~p~~r~~~~~~~~--~~~iy 159 (302)
T 2xn4_A 97 -DR----RSTLGAA--VLNGLLYAVGGFD----GSTGLSSVEAYNIKSNEWFH-VAP---MNTRRSSVGVGVV--GGLLY 159 (302)
T ss_dssp -SC----CBSCEEE--EETTEEEEEEEEC----SSCEEEEEEEEETTTTEEEE-ECC---CSSCCBSCEEEEE--TTEEE
T ss_pred -cc----ccceEEE--EECCEEEEEcCCC----CCccCceEEEEeCCCCeEee-cCC---CCCcccCceEEEE--CCEEE
Confidence 00 1111111 2267777777632 11123568888887654322 111 1110112222222 56777
Q ss_pred EEEeCC-------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C-----CeEEEEeCC
Q 040987 571 VSSSYG-------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E-----TVITLWDPD 637 (762)
Q Consensus 571 ~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d-----~~i~iwd~~ 637 (762)
+.|+.+ ..+.+||+.+.+-. ..............+. -++++++.|+ + ..+.+||..
T Consensus 160 v~GG~~~~~~~~~~~~~~yd~~~~~W~---------~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~ 228 (302)
T 2xn4_A 160 AVGGYDVASRQCLSTVECYNATTNEWT---------YIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPT 228 (302)
T ss_dssp EECCEETTTTEECCCEEEEETTTTEEE---------EECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETT
T ss_pred EEeCCCCCCCccccEEEEEeCCCCcEE---------ECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCC
Confidence 777643 35888888765332 2211111122222222 2677878775 3 469999999
Q ss_pred CCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCCc
Q 040987 638 RNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKLS 684 (762)
Q Consensus 638 ~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~~ 684 (762)
+.+-...-.........-+..-++++++.++.++. ..+.+||+++.+
T Consensus 229 ~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 229 TNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 87544322111111111222336788888876542 238888887753
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.91 E-value=0.49 Score=48.79 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=62.5
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---cCC------CCCCeEEEEeCCC---CCeEEEEec------
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---LPR------IGSPLLYFTESPD---PSLSSISCA------ 414 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~------~~~~v~~~~~s~~---~~~l~~~~~------ 414 (762)
-...+.|+|.|+|+.+++-...+.|++++..+++... +.. ....+..++++|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999877765444579888866555421 111 2456789999996 555555432
Q ss_pred -------CCcEEEEEcCCc--eE---EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee
Q 040987 415 -------DNQVHLLKMPSM--EI---IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA 465 (762)
Q Consensus 415 -------d~~i~i~d~~~~--~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 465 (762)
...|..++.... .. ...+..... ........++|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCCCCCeEeECCCCeEEEEEC
Confidence 234555655321 11 111211110 0013468899999998777654
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.91 E-value=0.053 Score=53.83 Aligned_cols=149 Identities=14% Similarity=0.222 Sum_probs=92.7
Q ss_pred ccccEEEEecCCccccceeeec---cCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhh--------hheeeeeeec-
Q 040987 212 MNGRICKCNLTESRLAGGVTLA---EMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAE--------RVVMRKITLH- 279 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~--------~~~~~~~~~~- 279 (762)
.++.||.-++..+..-+..... ....+..+..+|+|++||..++..|.|-.++.+... ..+.+....+
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 4567777777754422222222 133688999999999999999999999999843211 1122222222
Q ss_pred ----cCcCeEEEEEcCC---CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 280 ----HTKKLTVLAFHPT---QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 280 ----~~~~v~~~~~sp~---~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
...+|..+.|+|- +..|++-..|+.|++||+........ ... .......+...
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~-----------------k~~~~fg~d~~ 178 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLN-----------------KPNNSFGLDAR 178 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EES-----------------CCCSEEESCSS
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chh-----------------ccccccCCCcc
Confidence 2567999999994 45888888999999999975221100 000 00000122233
Q ss_pred ccceeEEEEecCCCEEEEEe--cCCeEEEE
Q 040987 353 PSEVSVLIFSSDGAYLYSGG--KEGVLVVW 380 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~--~dg~i~~w 380 (762)
...|.+++|.+++=.|+... +.|.|+-.
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 46788999998876666644 66777654
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.81 E-value=0.15 Score=49.69 Aligned_cols=240 Identities=8% Similarity=0.047 Sum_probs=118.0
Q ss_pred CCCCeEEEEec----CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec----C-----ceE
Q 040987 404 PDPSLSSISCA----DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE----N-----YCI 470 (762)
Q Consensus 404 ~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i 470 (762)
-++..++.|+. -..+.+||..+.+-... .....+ . .. .+++ .-+++.++.|+. + ..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~----r---~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~ 92 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVP----R---SG-LAGC-VVGGLLYAVGGRNNSPDGNTDSSAL 92 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSC----C---BS-CEEE-EETTEEEEECCEEEETTEEEECCCE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcc----c---cc-ceEE-EECCEEEEECCCcCCCCCCeecceE
Confidence 34555555553 24688899887654332 111100 0 11 1222 236677777775 2 358
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
.+||..+.+-.. +.... .+ ......+. -+++.++.|+.... .....+.+||..+.+-... ..
T Consensus 93 ~~~d~~~~~W~~-~~~~p---~~----r~~~~~~~--~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~~~-~~--- 154 (308)
T 1zgk_A 93 DCYNPMTNQWSP-CAPMS---VP----RNRIGVGV--IDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLV-AP--- 154 (308)
T ss_dssp EEEETTTTEEEE-CCCCS---SC----CBTCEEEE--ETTEEEEECCEETT----EECCCEEEEETTTTEEEEC-CC---
T ss_pred EEECCCCCeEeE-CCCCC---cC----ccccEEEE--ECCEEEEEcCCCCC----cccccEEEECCCCCeEeEC-CC---
Confidence 889987653211 11000 00 11111122 26777777763210 0124688888876542211 11
Q ss_pred cCCCCCceEEEEEcCCCCeEEEEeCC-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 551 EPHRDAGISAVAFHPNRRAAVSSSYG-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 551 ~~h~~~~v~~~~~spd~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
.+.....-..+.+ ++++++.|+.+ ..+.+||+.+.+-... ............+.+ ++++++.
T Consensus 155 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---------~~~p~~r~~~~~~~~--~~~iyv~ 221 (308)
T 1zgk_A 155 MLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---------TAMNTIRSGAGVCVL--HNCIYAA 221 (308)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---------CCCSSCCBSCEEEEE--TTEEEEE
T ss_pred CCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC---------CCCCCccccceEEEE--CCEEEEE
Confidence 1110112222333 67777777754 4588888876543222 111111222223333 6777777
Q ss_pred Ec-C-----CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCCc
Q 040987 626 AA-E-----TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKLS 684 (762)
Q Consensus 626 ~~-d-----~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~~ 684 (762)
|+ + ..+.+||+.+.+-...-..........+..-++++++.++.++. ..+.+||+++.+
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 75 3 56999999987654322111111111122236788888876542 247888887754
No 331
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.79 E-value=0.13 Score=50.05 Aligned_cols=217 Identities=11% Similarity=0.027 Sum_probs=110.1
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eC-----CeEEEEEccCch---hhhheeeeeeeccCcCe
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQ-----RKLLIWKVPDVE---AERVVMRKITLHHTKKL 284 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~-----~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v 284 (762)
..+.+||+.+++-...........-.+++ .-++++++.| .+ ..+.+||..+.+ .. .... ........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~--~~~~-~p~~r~~~ 106 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY--SVAP-MNVRRGLA 106 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE--EECC-CSSCCBSC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE--ECCC-CCCCccce
Confidence 47888888877644211111111112222 2355555544 22 568999988876 32 1111 11111122
Q ss_pred EEEEEcCCCcEEEEeecC-----CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 285 TVLAFHPTQRIVAAGDVT-----GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 285 ~~~~~sp~~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
..+.+ +++.++.|+.+ ..+.+||..+.+-.. +..+...... .++
T Consensus 107 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~----------------------------~~~~p~~r~~-~~~ 155 (301)
T 2vpj_A 107 GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM----------------------------LGDMQTAREG-AGL 155 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE----------------------------EEECSSCCBS-CEE
T ss_pred eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE----------------------------CCCCCCCccc-ceE
Confidence 22222 67777777654 357888876654322 0111100111 112
Q ss_pred EEecCCCEEEEEecC-----CeEEEEecCCCceeccCCCCCC---eEEEEeCCCCCeEEEEecC-----CcEEEEEcCCc
Q 040987 360 IFSSDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSP---LLYFTESPDPSLSSISCAD-----NQVHLLKMPSM 426 (762)
Q Consensus 360 ~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~ 426 (762)
+. .+++.++.|+.+ ..+.+||..+.+...+.....+ ...+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 156 ~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 156 VV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 22 266777777654 4588999988877544333221 222222 56777777653 46899999876
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCC
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDD 478 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~ 478 (762)
+-... ..... ......+..-+++.++.|+.+ ..+.+||+.+.
T Consensus 233 ~W~~~-~~~p~---------~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 233 SWTTV-TSMTT---------PRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEEE-CCCSS---------CCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cEEEC-CCCCC---------cccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 54332 21110 111111222367777777755 46788888765
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.73 E-value=0.27 Score=48.05 Aligned_cols=232 Identities=8% Similarity=-0.055 Sum_probs=112.5
Q ss_pred CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec----C-------ceEEEEEcCCCCceeeE
Q 040987 416 NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE----N-------YCIHFYSLLDDRGISEV 484 (762)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~i~d~~~~~~~~~~ 484 (762)
..+..||..+.+-.. .....+. ......+...+++.++.|+. + ..+..||..+.+-. .+
T Consensus 13 ~~~~~yd~~~~~W~~--~~~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~ 82 (315)
T 4asc_A 13 EGAVAYDPAANECYC--ASLSSQV-------PKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GM 82 (315)
T ss_dssp TEEEEEETTTTEEEE--EECCCCS-------CSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-EC
T ss_pred CceEEECCCCCeEec--CCCCCCC-------CccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-EC
Confidence 679999999876432 1111010 11222333457778888874 1 23778888765421 11
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
.... .......+..-+++.++.|+..... +......+.+||..+.+-.. +.. .+.....- +++.
T Consensus 83 ~~~p---------~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~-~~~---~p~~r~~~-~~~~- 146 (315)
T 4asc_A 83 PPLP---------SPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGE-SDP---LPYVVYGH-TVLS- 146 (315)
T ss_dssp CCBS---------SCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEE-CCC---CSSCCBSC-EEEE-
T ss_pred CCCC---------cchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeE-CCC---CCCcccce-eEEE-
Confidence 1100 0011111112266777777642111 11133568889988764221 111 11101111 2222
Q ss_pred CCCCeEEEEeC-C-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC-----eEE
Q 040987 565 PNRRAAVSSSY-G-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET-----VIT 632 (762)
Q Consensus 565 pd~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~-----~i~ 632 (762)
-++++++.|+. + ..+.+||..+.+-. ...........-..+. -++++++.|+ ++ .+.
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---------~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK---------ELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEE---------ECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEE---------ECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEE
Confidence 36677778776 2 36888988765332 2211111112222222 2677877776 32 688
Q ss_pred EEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC------C------CeEEEEECCCCc
Q 040987 633 LWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS------K------PQLSVWNMSKLS 684 (762)
Q Consensus 633 iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~------~------~~v~vwd~~~~~ 684 (762)
+||..+.+-...-..........+..-++++++.++.++ . ..+.+||+++.+
T Consensus 216 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 216 VYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCCCeEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 999998754433221111111122223678888887642 0 126677776653
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.71 E-value=0.27 Score=48.10 Aligned_cols=179 Identities=9% Similarity=0.037 Sum_probs=93.4
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe-----C-------CeEEEEEccCchhhhheeeeeeeccC
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK-----Q-------RKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-----~-------~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
..+.+||..+++-...............+...++++++.|. + ..+.+||..+.+-. ...... ...
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--~~~~~p-~~r 89 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL--GMPPLP-SPR 89 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE--ECCCBS-SCE
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE--ECCCCC-cch
Confidence 57889999888754211111223344444556777776443 1 23778888876542 111111 111
Q ss_pred cCeEEEEEcCCCcEEEEeecC--------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 282 KKLTVLAFHPTQRIVAAGDVT--------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~d--------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
..-..+.+ +++.++.|+.+ ..+.+||..+++-... ..+....
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~----------------------------~~~p~~r 139 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES----------------------------DPLPYVV 139 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC----------------------------CCCSSCC
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC----------------------------CCCCCcc
Confidence 11112222 66777777643 3588888866542210 1111111
Q ss_pred cceeEEEEecCCCEEEEEec-C-----CeEEEEecCCCceeccCCCCCC---eEEEEeCCCCCeEEEEecCC-----cEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGK-E-----GVLVVWQLDTGKKKFLPRIGSP---LLYFTESPDPSLSSISCADN-----QVH 419 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~-d-----g~i~~wd~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~d~-----~i~ 419 (762)
.. .+++ ..+++.++.|+. + ..+.+||..+.+.......+.+ ...+. -+++.++.|+.++ .+.
T Consensus 140 ~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 140 YG-HTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp BS-CEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEE
T ss_pred cc-eeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEE
Confidence 11 1122 236667777765 2 4689999998877554433221 12222 2667777777654 588
Q ss_pred EEEcCCceEE
Q 040987 420 LLKMPSMEII 429 (762)
Q Consensus 420 i~d~~~~~~~ 429 (762)
+||..+.+-.
T Consensus 216 ~yd~~~~~W~ 225 (315)
T 4asc_A 216 VYSITDNKWA 225 (315)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 8999876443
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.59 E-value=0.18 Score=58.20 Aligned_cols=280 Identities=8% Similarity=0.048 Sum_probs=152.4
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
..+|.+.|+..+...... +-..-+.-.+|..+.++.- ....+.|+|+.+...++.+.-.. .|.--.
T Consensus 47 ~~~vvIidl~~~~~~~rr--pi~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e-----------~VvfWk 112 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR--PISADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-----------DVTFWK 112 (1630)
T ss_pred CceEEEEECCCCCCcccc--cccchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC-----------CceEEE
Confidence 347899999886653221 1222345567888777766 47799999999876666554322 333334
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceee-EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISE-VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
|-.+ +.|+..+. ..|+-|++.....+.. +... .... ...|.....+++.++++..+...... .-.|.+.
T Consensus 113 Wis~-~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~----~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~--~v~G~mQ 182 (1630)
T 1xi4_A 113 WISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRH----SSLA--GCQIINYRTDAKQKWLLLTGISAQQN--RVVGAMQ 182 (1630)
T ss_pred ecCC-CeeEEEcC-CeEEEeccCCCCccHHHHhcc----hhcc--cCeeEEeeeCCCCCeEEEEeeccCCC--cccceee
Confidence 4433 34544443 4599999965332211 1111 0010 45688888999999998877432222 2468899
Q ss_pred EEEecCCCceeEEEEEeecCCCCCceEEEEEc---CCCCeEEEEeC---CCcEEEEEcccc-cccccccCCceeeeeecc
Q 040987 533 FWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH---PNRRAAVSSSY---GGDFKVWICNDE-LQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 533 iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s---pd~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 605 (762)
+|..+..... ...|| .+....+... +....++.+.. .+.+.|.++... .....+............
T Consensus 183 LyS~er~~sQ------~iegh-a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~ 255 (1630)
T 1xi4_A 183 LYSVDRKVSQ------PIEGH-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (1630)
T ss_pred eeecccccch------hhhHh-HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcc
Confidence 9988765321 12455 3333332221 11223333332 267889888553 111111100000111111
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
...+-..++..|+.-..+..-+ -|.|++||+.+|.++..-+-...+|.-.+-.....-++.....|. |.--.++...
T Consensus 256 ~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~--vl~v~v~~~~ 333 (1630)
T 1xi4_A 256 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ--VLSVCVEEEN 333 (1630)
T ss_pred cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCce--EEEEEEccch
Confidence 2234445777888777777777 899999999999887655544444544443333233333334443 5555554444
Q ss_pred ee
Q 040987 685 IS 686 (762)
Q Consensus 685 ~~ 686 (762)
++
T Consensus 334 iv 335 (1630)
T 1xi4_A 334 II 335 (1630)
T ss_pred hh
Confidence 33
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.34 E-value=0.29 Score=47.60 Aligned_cols=218 Identities=11% Similarity=0.071 Sum_probs=109.1
Q ss_pred cccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-e----C-----CeEEEEEccCchhhhheeeeeeeccCc
Q 040987 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-K----Q-----RKLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~----~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
-..+.+||..+++-...........-.+++. -++++++.| . + ..+.+||..+.+.. ..... .....
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~--~~~~~-p~~r~ 113 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS--PCAPM-SVPRN 113 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE--ECCCC-SSCCB
T ss_pred cceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe--ECCCC-CcCcc
Confidence 3468888888776542111111111122222 255555543 2 1 46888998876643 11111 11111
Q ss_pred CeEEEEEcCCCcEEEEeecC-----CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 283 KLTVLAFHPTQRIVAAGDVT-----GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
....+.+ +++.++.|+.+ ..+.+||..+.+-... ..+......-.
T Consensus 114 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----------------------------~~~p~~r~~~~ 163 (308)
T 1zgk_A 114 RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV----------------------------APMLTRRIGVG 163 (308)
T ss_dssp TCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEEC----------------------------CCCSSCCBSCE
T ss_pred ccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeEC----------------------------CCCCccccceE
Confidence 2222223 67777777644 3577888766543221 01110111111
Q ss_pred EEEEecCCCEEEEEecC-----CeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEEecC-----CcEEEEEcC
Q 040987 358 VLIFSSDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSISCAD-----NQVHLLKMP 424 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~ 424 (762)
.+.+ +++.++.|+.+ ..+.+||..+.+......... ....+.+ +++.++.|+.+ ..+.+||+.
T Consensus 164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred EEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence 2222 66677777654 458999998887654433222 1222333 66777777654 568999998
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCC
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDD 478 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~ 478 (762)
+.+-.. +.....+ ..-.+++. -+++.++.|+.+ ..+.+||+.+.
T Consensus 240 ~~~W~~-~~~~p~~--------r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 240 TETWTF-VAPMKHR--------RSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp TTEEEE-CCCCSSC--------CBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCcEEE-CCCCCCC--------ccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 765432 2211100 01112222 366777777644 45778888765
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.12 Score=50.40 Aligned_cols=207 Identities=10% Similarity=0.006 Sum_probs=102.9
Q ss_pred CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE---EEeCCCCEEEEe-ecCceEEEEEcCCCCcee
Q 040987 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI---AFNHDGGLVALR-AENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 482 (762)
..+++++.||.|+-+|..+|+....+..... ..+... ....++..++.. +.||.|+.++..++....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~---------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF---------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGS---------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCcc---------CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 4678889999999999999999999876410 000000 000133334343 689999999988774433
Q ss_pred eEEeecccccCCCCcceeEEE---EEE-e----cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 483 EVQVCERNHQPGDDVTVVVTL---VAL-S----QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~---~~~-s----p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
.+....... ..++.. ... . ..+..+.+++ .++.+...|+.+++.++.+......++.
T Consensus 82 ~~~~~~lv~------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs---------~~g~l~ald~~tG~~~W~~~~~~~~~~~ 146 (339)
T 2be1_A 82 PLSIRQLVS------TSPLHLKTNIVVNDSGKIVEDEKVYTGS---------MRTIMYTINMLNGEIISAFGPGSKNGYF 146 (339)
T ss_dssp EEEHHHHHT------TCSEEEECC----------CCEEEEECE---------EEEEEEEEETTTCCEEEEESTTCBCC--
T ss_pred eecccccee------ccccccCCCceeecccccccCCEEEEEe---------cCCEEEEEECCCCcEEEEEecCCCcccc
Confidence 322211000 111110 000 0 1455677777 7899999999999998887431000000
Q ss_pred C-CceEEEEEc-----CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCe-EEEEEcCCCcEEEEEc
Q 040987 555 D-AGISAVAFH-----PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAM-TAAAFSADGSVLAVAA 627 (762)
Q Consensus 555 ~-~~v~~~~~s-----pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~dg~~la~~~ 627 (762)
. ....|.... -.+..++.+..+..+.+.+ ++++ .-...-..|... .....+ ..-..+.|+.++++..
T Consensus 147 ~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~----~~~~~~~~~~~~s~Dg~~~~~~~ 220 (339)
T 2be1_A 147 GSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQN----VLDVPLALQNTFSKDGMCIAPFR 220 (339)
T ss_dssp ------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECC----TTTHHHHTTCSSCSSSCCEEEET
T ss_pred cccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccc----ccccccccccccccCCcEEEECC
Confidence 0 000111110 1234566666666666655 3332 111100000000 000000 0001124577765445
Q ss_pred CCeEEEEeCCCCeEEE
Q 040987 628 ETVITLWDPDRNVLVA 643 (762)
Q Consensus 628 d~~i~iwd~~~~~~~~ 643 (762)
||.|.-+|..+|+.+-
T Consensus 221 dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 221 DKSLLASDLDFRIARW 236 (339)
T ss_dssp TTEEEEECSTTCCEEE
T ss_pred CCEEEEEECCCCcEEE
Confidence 8888888888887664
No 337
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.27 E-value=0.24 Score=48.00 Aligned_cols=217 Identities=11% Similarity=0.114 Sum_probs=107.7
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eC-----CeEEEEEccCchhhhheeeeeeeccCcCeEEE
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQ-----RKLLIWKVPDVEAERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 287 (762)
..+..||+.+.+-...........-.+++. -++++++.| .+ ..+.+||..+.+.. .... .......-..+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~--~~~~-~p~~r~~~~~~ 105 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT--SVAN-MRDRRSTLGAA 105 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEE--EECC-CSSCCBSCEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCcee--eCCC-CCccccceEEE
Confidence 457888887765431111111111112222 255555544 22 46888998876643 1111 11111112222
Q ss_pred EEcCCCcEEEEeecCC-----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 288 AFHPTQRIVAAGDVTG-----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.+ +++.++.|+.++ .+.+||..+.+-... ..+...... .+++.
T Consensus 106 ~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~----------------------------~~~p~~r~~-~~~~~- 153 (302)
T 2xn4_A 106 VL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV----------------------------APMNTRRSS-VGVGV- 153 (302)
T ss_dssp EE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE----------------------------CCCSSCCBS-CEEEE-
T ss_pred EE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec----------------------------CCCCCcccC-ceEEE-
Confidence 22 677777777553 577788766543221 011101111 11222
Q ss_pred cCCCEEEEEecC-------CeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEEecC-----CcEEEEEcCCce
Q 040987 363 SDGAYLYSGGKE-------GVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSISCAD-----NQVHLLKMPSME 427 (762)
Q Consensus 363 ~~g~~l~s~~~d-------g~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~ 427 (762)
-+++.++.|+.+ ..+.+||..+.+......... ....+. -+++.++.|+.+ +.+.+||..+.+
T Consensus 154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 154 VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 256666666542 358899998887654433222 122222 256777777654 468999998765
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-----eEEEEEcCCC
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-----CIHFYSLLDD 478 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~ 478 (762)
-.. +..... ......+..-+++.++.|+.++ .+.+||+.+.
T Consensus 232 W~~-~~~~~~---------~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 232 WRQ-VADMNM---------CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEE-ECCCSS---------CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred Eee-CCCCCC---------ccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 433 221111 1111112223677778877553 4888888765
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.13 E-value=0.48 Score=47.22 Aligned_cols=63 Identities=13% Similarity=0.001 Sum_probs=37.0
Q ss_pred CCCEEEEEecC-CeEEEEecCC--CceeccCCCC-C---CeEEEEeCCCCCeEEEEec-C---------CcEEEEEcCCc
Q 040987 364 DGAYLYSGGKE-GVLVVWQLDT--GKKKFLPRIG-S---PLLYFTESPDPSLSSISCA-D---------NQVHLLKMPSM 426 (762)
Q Consensus 364 ~g~~l~s~~~d-g~i~~wd~~~--~~~~~~~~~~-~---~v~~~~~s~~~~~l~~~~~-d---------~~i~i~d~~~~ 426 (762)
+++.++.|+.+ ..+.++|..+ .+...+...+ . ....+. -++++++.|+. + +.+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 66666666643 5688999874 4554443332 1 122222 25677777665 2 46889999876
Q ss_pred eE
Q 040987 427 EI 428 (762)
Q Consensus 427 ~~ 428 (762)
+-
T Consensus 97 ~W 98 (357)
T 2uvk_A 97 SW 98 (357)
T ss_dssp EE
T ss_pred cE
Confidence 53
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.99 E-value=0.18 Score=45.03 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=79.8
Q ss_pred CCceEEEECCCCCEEEEEeCCeEEEEEccCchhhh--heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 236 KEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAER--VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 236 ~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
..+..++|+|+|.+.|+ .++.+.-.+..+.+... ..-.++-..--....++.|.|+|.+.++ .||.|+-++..+.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 36779999999998888 88887666655432210 0000111101112478999999987776 5698887764221
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce------
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK------ 387 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~------ 387 (762)
..- .-.. .-...-.+--..+..+.|.|+|.+.+.. |+.++-+..-++..
T Consensus 118 ~~~----~Wl~-------------------~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~ 172 (236)
T 1tl2_A 118 DTD----NWIA-------------------RATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLAR 172 (236)
T ss_dssp TTC----CHHH-------------------HSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHH
T ss_pred CCC----ceec-------------------cccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccc
Confidence 100 0000 0001111122467899999999766555 77765443322211
Q ss_pred -eccC-CCCCCeEEEEeCCCCCeEEEE
Q 040987 388 -KFLP-RIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 388 -~~~~-~~~~~v~~~~~s~~~~~l~~~ 412 (762)
..+. ..-.....+.|.+++.+.++.
T Consensus 173 ~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 173 ATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp CEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred cceeccCCcceEEEEEECCCCcEEEEe
Confidence 0011 111233445678887776665
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.90 E-value=0.18 Score=45.06 Aligned_cols=93 Identities=11% Similarity=0.008 Sum_probs=56.8
Q ss_pred eEEEEecCCCeEEEEecCCcc------eeeeecC--cccccCCceeecCCCEEEEEeCCEEEEEEcccceE------Eee
Q 040987 44 FIFAVARSSGLCRTAEYPAVN------SKMIRGG--RSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQ------ISS 109 (762)
Q Consensus 44 ~~~a~~~~~g~i~~~~~~~~~------~~~~~~h--~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~------~~~ 109 (762)
+++++ ..| +++.=..+... +....|+ =..+.. ++|+|||.+.|. .+|.+.-.+..++.. -..
T Consensus 6 ~l~~v-~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~-laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGV-YQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKF-LFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEE-ETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSE-EEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEE-eCC-cEEecCCCCCcccchhhhccccCcccccccee-EEECCCccEEEE-eCCeEEEECCCCCCcccccccccE
Confidence 34444 445 76666666544 2233444 257776 999999998888 778877777655221 111
Q ss_pred ec--CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeC
Q 040987 110 LE--GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDF 150 (762)
Q Consensus 110 l~--~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~ 150 (762)
+- +-.. -.++.|.|+| .+.++ .||.|.-|+-
T Consensus 82 IG~~Gw~~-F~a~~fD~~G-------~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 82 IGNGGWNQ-FQFLFFDPNG-------YLYAV--SKDKLYKASP 114 (236)
T ss_dssp EECSCGGG-CSEEEECTTS-------CEEEE--ETTEEEEESC
T ss_pred eccccccc-ceEEEECCCC-------CEEEe--CCCEEEEeCC
Confidence 11 1112 4889999999 34344 5688877764
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.80 E-value=0.93 Score=44.21 Aligned_cols=177 Identities=9% Similarity=0.078 Sum_probs=90.5
Q ss_pred cEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe-----CC-------eEEEEEccCchhhhheeeeeeeccCc
Q 040987 215 RICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK-----QR-------KLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-----~~-------~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
.+..||..+++-...............+...++++++.|. ++ .+.+||..+.+-. ...... ....
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--~~~~~p-~~r~ 101 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV--GLPPLP-SARC 101 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEE--ECSCBS-SCBC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE--ECCCCC-cccc
Confidence 3788999888765321111122333444556777776553 11 2777888776543 111111 1111
Q ss_pred CeEEEEEcCCCcEEEEeecC-------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 283 KLTVLAFHPTQRIVAAGDVT-------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
....+.+ +++.++.|+.+ ..+.+||..+.+-.... .......+|.
T Consensus 102 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~------------------------~~p~~r~~~~-- 153 (318)
T 2woz_A 102 LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK------------------------NLPIKVYGHN-- 153 (318)
T ss_dssp SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC------------------------CCSSCEESCE--
T ss_pred ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC------------------------CCCCcccccE--
Confidence 1122222 67777777754 35778887665432210 0001111221
Q ss_pred eeEEEEecCCCEEEEEecC------CeEEEEecCCCceeccCCCCCC---eEEEEeCCCCCeEEEEecC-----CcEEEE
Q 040987 356 VSVLIFSSDGAYLYSGGKE------GVLVVWQLDTGKKKFLPRIGSP---LLYFTESPDPSLSSISCAD-----NQVHLL 421 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~d-----~~i~i~ 421 (762)
++. .+++.++.|+.+ ..+.+||..+.+.........+ ...+. -+++.++.|+.+ ..+.+|
T Consensus 154 ---~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 154 ---VIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp ---EEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEE
T ss_pred ---EEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEE
Confidence 222 466676777642 3589999998876544332221 12222 256777777643 357788
Q ss_pred EcCCceE
Q 040987 422 KMPSMEI 428 (762)
Q Consensus 422 d~~~~~~ 428 (762)
|+.+.+-
T Consensus 228 d~~~~~W 234 (318)
T 2woz_A 228 DLKTNKW 234 (318)
T ss_dssp ETTTCCE
T ss_pred ECCCCeE
Confidence 9887543
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.81 Score=44.60 Aligned_cols=110 Identities=9% Similarity=0.070 Sum_probs=64.9
Q ss_pred eeEEeeecCCeEEEEeCCCcceEEEEEec--cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCC
Q 040987 134 SYCWTASLDGTIKYWDFSVPELLKTIDVK--FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNT 211 (762)
Q Consensus 134 ~~l~s~s~d~~i~vWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 211 (762)
.+++.++.||.|.-.|..+|+.+-+++.. .++....- +....+. .+.+ +..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~------~~~~~~~---~~~v-----------------v~p~ 64 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE------PSRLETY---ETLI-----------------IEPF 64 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC------SCTTTSS---EEEE-----------------ECCS
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC------CccccCC---cEEE-----------------EEEC
Confidence 46778999999999999999999988765 23332210 0000000 0111 1125
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEE------------CCCCCEEEEEeCCeEEEEEccCchhh
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITI------------SSSGKYFGIRKQRKLLIWKVPDVEAE 269 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~------------spdg~~la~~~~~~i~iwd~~~~~~~ 269 (762)
.||.|..++..+|..........--...-+.. +.+|..++.+.++.+...|+.+|+..
T Consensus 65 ~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 65 GDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp TTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 78999999988885442111111001111111 24666667778999999999999864
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.52 E-value=1.6 Score=45.00 Aligned_cols=126 Identities=7% Similarity=-0.034 Sum_probs=64.9
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC---CCeEEEEeeecccc
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD---GSLMSTVDIKLAEE 523 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~ 523 (762)
.....++|.|+|+++++-...+.|++++..++.. ..+........ ..........++|+|+ +..|.+........
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~-~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVN-DADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCC-CTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCcccc-ccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3557999999998776654445788888655432 22221111110 0001345789999996 55555443210000
Q ss_pred CC----CceeEEEEEEecCCCce----eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 524 GI----GSLVCLKFWVSGTQNKE----FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 524 ~~----~~d~~i~iwd~~~~~~~----~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
.. .....|.-|+....... ..+-....... ......++|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-DHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-SCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC-CCCCCeEeECCCCeEEEEECC
Confidence 00 01346666666543211 11111011111 125789999999988777653
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.45 E-value=1.1 Score=44.50 Aligned_cols=148 Identities=9% Similarity=0.035 Sum_probs=69.8
Q ss_pred CeEEEEecCCCceeccCCCCC--Ce-EEEEeCCCCCeEEEEec------CCcEEEEEc--CCceEEEEEccCCCCCCCCC
Q 040987 375 GVLVVWQLDTGKKKFLPRIGS--PL-LYFTESPDPSLSSISCA------DNQVHLLKM--PSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~--~v-~~~~~s~~~~~l~~~~~------d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~ 443 (762)
..+.+||..+.+......... .. .+++. -+++.++.|+. ...+..||+ .+.+ ...+.....+.
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~---- 241 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPD---- 241 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTT----
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCc----
Confidence 478999998887654332221 11 22222 25666666653 345777877 3332 22222111000
Q ss_pred cccCceeeEEEeCCCCEEEEeecC----------------------ceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 444 EYKGLCRDIAFNHDGGLVALRAEN----------------------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
......+...++++++.|+.+ ..+.+||+.+.+-.. +...... ..
T Consensus 242 ---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~-------r~-- 308 (357)
T 2uvk_A 242 ---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK-SGELSQG-------RA-- 308 (357)
T ss_dssp ---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE-EEECSSC-------CB--
T ss_pred ---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee-CCCCCCC-------cc--
Confidence 111222334466777777642 257889987654322 1111110 11
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
...+..-+++.++.|+.+.... .-..+.++++++++....
T Consensus 309 ~~~~~~~~~~i~v~GG~~~~~~---~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 309 YGVSLPWNNSLLIIGGETAGGK---AVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp SSEEEEETTEEEEEEEECGGGC---EEEEEEEEEC-CCSCEEE
T ss_pred cceeEEeCCEEEEEeeeCCCCC---EeeeEEEEEEcCcEeEee
Confidence 1122335778888887431100 125677778887776543
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.00 E-value=3.9 Score=42.26 Aligned_cols=255 Identities=15% Similarity=0.116 Sum_probs=139.5
Q ss_pred EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC---------------CcccCcee--eEEEe---CCCCEEEEee-cC
Q 040987 409 SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP---------------EEYKGLCR--DIAFN---HDGGLVALRA-EN 467 (762)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~--~~~~s---~~~~~l~~~~-~d 467 (762)
+.+|+..|.++|+-+.+++.+..+.........- ....+... .+.+. .||++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5677789999999999999998875443221100 00011112 22332 2677777765 34
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe--cCCCeEEEEeee-ccccC--C-------CceeEEEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS--QDGSLMSTVDIK-LAEEG--I-------GSLVCLKFWV 535 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~g~~l~~~~~~-~~~~~--~-------~~d~~i~iwd 535 (762)
..|...++...+.-..+.... ...+..+.|- |+-.|++.++.. .|... . +.-+.....|
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn---------~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPN---------VQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTT---------CSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred cceEEEECCcEeeceeEeCCC---------CcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 567777777665443333221 3456777775 677777776633 11111 0 0112222233
Q ss_pred ecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC---------------cEEEEEcccccccc------ccc
Q 040987 536 SGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG---------------DFKVWICNDELQQK------DLQ 594 (762)
Q Consensus 536 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg---------------~i~iwd~~~~~~~~------~~~ 594 (762)
.++-+..+++.. .+....+...++|++.++.+.+. -+.++|+..-+... .+.
T Consensus 224 ~~tm~v~~Qv~v-------~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 224 AETMEMAFQVIV-------DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp TTTCSEEEEEEE-------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred CCccEEEEEEEc-------CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 333333333221 22344566788899888877542 26666664211110 000
Q ss_pred CCceeeeeecc-------------cCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCC------e-------EEEEec
Q 040987 595 SSGWSCHAVGS-------------YKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRN------V-------LVAVIG 646 (762)
Q Consensus 595 ~~~~~~~~~~~-------------~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~------~-------~~~~l~ 646 (762)
.+.... .... .-......+..+|||+++++++ +.++.++|++.- + .....+
T Consensus 297 g~gv~V-iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 297 DSKTPV-LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp TCCCCE-EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred CCCeeE-EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 000000 0000 0123345688999999999987 899999998742 1 133333
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.- -.-...+|.++|.-..|.--|.. |.-|+++..
T Consensus 376 ~G-lGPlHt~Fd~~G~aYTtlfidSq--vvkWni~~a 409 (638)
T 3sbq_A 376 LG-LGPLHTTFDGRGNAYTTLFIDSQ--VVKWNMEEA 409 (638)
T ss_dssp CC-SCEEEEEECSSSEEEEEETTTTE--EEEEEHHHH
T ss_pred CC-CcccEEEECCCCceEeeeeecce--EEEEeccHH
Confidence 22 23567999999955555557776 999999864
No 346
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.58 E-value=3.6 Score=39.90 Aligned_cols=106 Identities=13% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCCEEEEEecC-------CeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEec------CCcEEEEEcCCceEE
Q 040987 364 DGAYLYSGGKE-------GVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCA------DNQVHLLKMPSMEII 429 (762)
Q Consensus 364 ~g~~l~s~~~d-------g~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~------d~~i~i~d~~~~~~~ 429 (762)
+++.++.|+.+ ..+.+||..+.+.......+.+... .+...+++.++.|+. ...+.+||..+.+-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 56677777653 3588899988877654433322111 111246677777654 245899999876543
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDR 479 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~ 479 (762)
.. .....+ ..-.+++. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 189 ~~-~~~p~~--------r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 189 DL-APMKTP--------RSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EE-CCCSSC--------CBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EC-CCCCCC--------cccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 32 211100 01112222 366777777643 457889987764
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.71 E-value=3.6 Score=45.14 Aligned_cols=208 Identities=9% Similarity=0.016 Sum_probs=108.2
Q ss_pred cCCCEEEEEecC----CeEEEEecCCCceeccC-C-----CC---CCeEEEEeCCCCCeEEEEecC------CcEEEEEc
Q 040987 363 SDGAYLYSGGKE----GVLVVWQLDTGKKKFLP-R-----IG---SPLLYFTESPDPSLSSISCAD------NQVHLLKM 423 (762)
Q Consensus 363 ~~g~~l~s~~~d----g~i~~wd~~~~~~~~~~-~-----~~---~~v~~~~~s~~~~~l~~~~~d------~~i~i~d~ 423 (762)
.++..++.|+.+ ..+.+||..+++..... . .. ..-..+.+..+++.++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 46889999888765443 2 11 122233333277777777653 35889998
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+.+-... .....+ ..-.+++...+++.++.|+.++ .+.+||..+..-. .... .+..+.. ....
T Consensus 476 ~t~~W~~~-~~~p~~--------R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~--~~~~-~g~~p~~--r~~~ 541 (695)
T 2zwa_A 476 KTREWSMI-KSLSHT--------RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK--DVTP-KDEFFQN--SLVS 541 (695)
T ss_dssp TTTEEEEC-CCCSBC--------CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE--ECCC-SSGGGGS--CCBS
T ss_pred CCCcEEEC-CCCCCC--------cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE--EccC-CCCCCCc--ccce
Confidence 87543322 111100 1112333334788888887654 6899998875321 1110 0000000 1112
Q ss_pred EEEEEecC-CCeEEEEeeeccccCCCceeEEEEEEecCCCc-----eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 502 TLVALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-----EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 502 ~~~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
..+.+..+ ++.++.|+... ++......+.+||+.+..- -..+... ... ...-.+++...++++++.|+.
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~--~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~-~R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFM--DQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLF-QRYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp CEEEEETTTTEEEEECCBCT--TSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGG-CCBSCEEEEEETTEEEEECCB
T ss_pred eEEEEeCCCCEEEEECCcCC--CCCeeeCcEEEEEccCCccccceEEEEcCCC--CCC-CcccceEEEeCCCEEEEECCc
Confidence 33455555 66777776310 0001236799999998762 1111110 011 111122333334778888874
Q ss_pred C--------CcEEEEEcccccc
Q 040987 576 G--------GDFKVWICNDELQ 589 (762)
Q Consensus 576 d--------g~i~iwd~~~~~~ 589 (762)
+ ..+.+||+.+..-
T Consensus 617 ~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 617 SPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp CSSCCCCTTTSEEEEETTTTEE
T ss_pred cCCCCCCCCCeEEEEECCCCeE
Confidence 3 4588999876643
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.44 E-value=9.6 Score=41.74 Aligned_cols=196 Identities=9% Similarity=0.026 Sum_probs=102.2
Q ss_pred CCCCEEEEEe-----CCeEEEEEccCchhhhheee-ee----eeccCcCeEEEEEcC-CCcEEEEeecCC------eEEE
Q 040987 245 SSGKYFGIRK-----QRKLLIWKVPDVEAERVVMR-KI----TLHHTKKLTVLAFHP-TQRIVAAGDVTG------RILI 307 (762)
Q Consensus 245 pdg~~la~~~-----~~~i~iwd~~~~~~~~~~~~-~~----~~~~~~~v~~~~~sp-~~~~l~~~~~dg------~v~v 307 (762)
-++.+++.|. -..+.+||..+.+.. ... .. ....... .+++..+ +++.++.|+.++ .+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~--~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKID--MKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEE--EEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEE--EeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence 4566665443 246888998877643 111 00 0111112 2333333 777788877543 4778
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC--eEEEEecCCC
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG--VLVVWQLDTG 385 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--~i~~wd~~~~ 385 (762)
||..+.+.... ..+.... .-.+++...+++.++.|+.++ .+.+||..+.
T Consensus 473 yd~~t~~W~~~----------------------------~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 473 FDMKTREWSMI----------------------------KSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp EETTTTEEEEC----------------------------CCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred EeCCCCcEEEC----------------------------CCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 88766532221 1111101 111223323778888887654 6899999988
Q ss_pred ceeccCC------CCCCeEEEEeCCC-CCeEEEEec--C-----CcEEEEEcCCceE-----EEEEccCCCCCCCCCccc
Q 040987 386 KKKFLPR------IGSPLLYFTESPD-PSLSSISCA--D-----NQVHLLKMPSMEI-----IRSISGIKLPCPLPEEYK 446 (762)
Q Consensus 386 ~~~~~~~------~~~~v~~~~~s~~-~~~l~~~~~--d-----~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~ 446 (762)
....... ......++.+..+ ++.++.|+. + +.+.+||+.+..- ...+..... . .
T Consensus 524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~-~-----~- 596 (695)
T 2zwa_A 524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL-F-----Q- 596 (695)
T ss_dssp EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG-G-----C-
T ss_pred ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC-C-----C-
Confidence 7754432 1122233555554 667777765 2 4588999988761 222221100 0 0
Q ss_pred CceeeEEEeCCCCEEEEeecC--------ceEEEEEcCCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAEN--------YCIHFYSLLDDR 479 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~ 479 (762)
..-.+++...+++.++.|+.+ ..+.+||+.+.+
T Consensus 597 R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred cccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 111233334447777777742 458888887653
No 349
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.33 E-value=19 Score=39.26 Aligned_cols=240 Identities=6% Similarity=-0.010 Sum_probs=119.5
Q ss_pred EEEE-EcCCCcEEEEe-----ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-----
Q 040987 285 TVLA-FHPTQRIVAAG-----DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP----- 353 (762)
Q Consensus 285 ~~~~-~sp~~~~l~~~-----~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----- 353 (762)
..+. ++|++++++.+ +.-..++++|+.+++.+... +. -....
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--------------------------~~-~~~k~~~~~~ 184 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--------------------------FE-PITNSGKLLE 184 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--------------------------SC-CBCTTCCBCC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--------------------------cc-cccccccccc
Confidence 4455 89999988764 22347999999888655311 00 00000
Q ss_pred cceeEEEEecCCCEEEEE----------ecCCeEEEEecCCCce----eccCCCCCCeEEEEeCCCCCe-----EEEEec
Q 040987 354 SEVSVLIFSSDGAYLYSG----------GKEGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDPSL-----SSISCA 414 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~----------~~dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~~~-----l~~~~~ 414 (762)
.....++|..+...+++. +....|+.|.+.+... ++.......-.....++++++ ++..+.
T Consensus 185 ~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 264 (711)
T 4hvt_A 185 GKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANK 264 (711)
T ss_dssp EETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEES
T ss_pred cccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEec
Confidence 011234666333333321 1225688888776532 222222222334556677663 333221
Q ss_pred ---CCcEEEEEcCC--ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe----------ecCceEEEEEcCCCC
Q 040987 415 ---DNQVHLLKMPS--MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR----------AENYCIHFYSLLDDR 479 (762)
Q Consensus 415 ---d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----------~~dg~i~i~d~~~~~ 479 (762)
...+++.+... ++.. .+.... . ..+....++.+++.. ...+.|...++.+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~l~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 331 (711)
T 4hvt_A 265 DFYNYDNYILDTKYKNLKLQ-KINMPS----------D--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLL 331 (711)
T ss_dssp SSSCEEEEEEECSSSSCEEE-ECCSCT----------T--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGG
T ss_pred ccCceeEEEEcCCCCCCcce-EeecCC----------c--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCccc
Confidence 23466666553 3322 222111 1 122344455555533 135678888887642
Q ss_pred -------ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC-ceeE-EEEEee
Q 040987 480 -------GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN-KEFT-LSTIVY 550 (762)
Q Consensus 480 -------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~-~~~~~~ 550 (762)
....+..... ...+..+.+..+ .++++...+ ....+.++++.++. .... +.
T Consensus 332 ~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~-~l~~~~~~~-------~~~~l~~~~~~~g~~~~~~~i~---- 391 (711)
T 4hvt_A 332 KTESDKTSLKILFTPTA--------NEVFNFISTTKD-RVFLATYDN-------VVAKVVTFTLENEQWTKPVVLK---- 391 (711)
T ss_dssp SCGGGCTTCEEEECCCT--------TEEEEEEEECSS-CEEEEEEET-------TEEEEEEECEETTEECCCEEEC----
T ss_pred ccccccccceEEECCCC--------CCeEEEEEEECC-EEEEEEEEC-------CEEEEEEEECCCCceEEEeccC----
Confidence 1112111111 456888888876 444444421 44578888877663 1222 11
Q ss_pred cCCCCCceEEEEEcCCCCeEEE-EeC---CCcEEEEEcc
Q 040987 551 EPHRDAGISAVAFHPNRRAAVS-SSY---GGDFKVWICN 585 (762)
Q Consensus 551 ~~h~~~~v~~~~~spd~~~l~~-~~~---dg~i~iwd~~ 585 (762)
.+. .+.+.....++++..++. .+. -+.+..+|+.
T Consensus 392 lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 392 LPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 121 345666777777765443 332 3567777775
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.96 E-value=33 Score=35.09 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=36.2
Q ss_pred CCceEEEECCCCC--EEEEEeCCeEEEEEccCchhhhheeee----eee----ccCcCeEEEEEcCC
Q 040987 236 KEPQVITISSSGK--YFGIRKQRKLLIWKVPDVEAERVVMRK----ITL----HHTKKLTVLAFHPT 292 (762)
Q Consensus 236 ~~v~~~~~spdg~--~la~~~~~~i~iwd~~~~~~~~~~~~~----~~~----~~~~~v~~~~~sp~ 292 (762)
...+.|+|.|||. ++++-..|.|++++....... ..+.. ... ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~-~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFK-EPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCS-SCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeee-eeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4678999999995 778888899999975432110 01111 111 12467889999996
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=83.78 E-value=29 Score=32.65 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=112.0
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
.|..++.... ..++. . +|.++.|-......+. .+......|..++...+. .++. . ||.|+.|-.
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg----------~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~ 88 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLT----------MPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGG 88 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTS----------CCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEEC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCC----------CCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeC
Confidence 5666665433 22333 4 8999999765421110 011111355666655432 3333 4 899999976
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCC
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRD 555 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~ 555 (762)
.....+.. ... . ...|..++...+...+++ . +.|+.|-......... . ... .
T Consensus 89 n~~Gqlg~---P~~-~------~~~v~~ia~G~~hs~al~-~-----------G~v~~wG~n~~gqlg~-~----~~~-~ 140 (282)
T 3qhy_B 89 NEDGQTTV---PAE-A------RSGVDAIAAGAWASYALK-D-----------GKVIAWGDDSDGQTTV-P----AEA-Q 140 (282)
T ss_dssp CTTSTTCC---CGG-G------SSSEEEEEEETTEEEEEE-T-----------TEEEEEECCTTSTTSC-C----GGG-G
T ss_pred CCCCCCCC---Ccc-c------CCCeEEEECcCCEEEEEe-C-----------CeEEEecCCCCCcCCC-C----ccC-C
Confidence 54332211 000 0 234666666555444444 3 5777776554322110 0 111 3
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 556 AGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 556 ~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
..|..++...+. .+.-. ||.++.|-........... .....|..++...+- .++. .||.|+.|-
T Consensus 141 ~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~-----------~~~~~v~~i~~G~~h-s~al-~~G~v~~wG 204 (282)
T 3qhy_B 141 SGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPA-----------EAQSGVDDVAGGIFH-SLAL-KDGKVIAWG 204 (282)
T ss_dssp SSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCG-----------GGGSSEEEEEECSSE-EEEE-ETTEEEEEE
T ss_pred CCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCce-----------ecCCCeEEEEecCCE-EEEE-ECCeEEEEE
Confidence 467777665433 22233 7899999766533322110 113457777665443 3444 689999997
Q ss_pred CCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 636 PDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 636 ~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
....-.+..-......|..++-..+.. ++.. ||. |+.|--..
T Consensus 205 ~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~--~g~--v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPTEALSGVSAIASGEWYS-LALK--NGK--VIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE--TTE--EEEESTTC
T ss_pred CCCCCCCCCCcccCCCceEEEcCCCEE-EEEE--CCE--EEEecCCC
Confidence 654322221111223466776555432 3333 776 99996544
No 352
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.60 E-value=36 Score=33.56 Aligned_cols=184 Identities=13% Similarity=0.102 Sum_probs=99.4
Q ss_pred eEEEEEcCCC--CceeeEEeecccccCCCCcceeEEEEEEe---cC----CCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 469 CIHFYSLLDD--RGISEVQVCERNHQPGDDVTVVVTLVALS---QD----GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 469 ~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~----g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
.|.+||+.++ +.+.++........+ ...+..+++. |+ +.++..++. ....|.++|+.++
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~----~S~l~di~VD~~~~~~~c~~~~aYItD~--------~~~gLIVydl~~~ 191 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEK----PTYFGGFAVDVANPKGDCSETFVYITNF--------LRGALFIYDHKKQ 191 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCC----GGGEEEEEEEESCTTTTSCSEEEEEEET--------TTTEEEEEETTTT
T ss_pred eEEEEECCCCCceeEEEEECCHHhccc----CCccceEEEecccCCCCCCccEEEEEcC--------CCCcEEEEECCCC
Confidence 5778888888 777776654332211 3457788887 22 334444432 4578999999987
Q ss_pred CceeEEEE---------EeecCCC---CCceEEEEEcCC----CCeEEEEeCCCcEEEEEcccccccccccCCceeeeee
Q 040987 540 NKEFTLST---------IVYEPHR---DAGISAVAFHPN----RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603 (762)
Q Consensus 540 ~~~~~~~~---------~~~~~h~---~~~v~~~~~spd----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 603 (762)
+..+.+.. ....|.. ...+..++++|+ ++.|......+ -++|.+.+..+........... .
T Consensus 192 ~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~--~ 268 (381)
T 3q6k_A 192 DSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPEL--L 268 (381)
T ss_dssp EEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEE--E
T ss_pred cEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEE--e
Confidence 65443321 0111110 247889999998 78888777655 3566665433221110001111 1
Q ss_pred cc-cCCCCeEEEEEc-CCCcEEEEEc-CCeEEEEeCCC-C---eEEEEec-c-ccCceeEEEEeCCCCEEEEE
Q 040987 604 GS-YKKKAMTAAAFS-ADGSVLAVAA-ETVITLWDPDR-N---VLVAVIG-E-TLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 604 ~~-~~~~~i~~~~~s-~dg~~la~~~-d~~i~iwd~~~-~---~~~~~l~-~-~~~~v~~~~~s~dg~~l~s~ 667 (762)
+. +....-..+++. .+|.++++-- ...|..|+..+ . +-...+. . .-.....+.+.++|.+.+.+
T Consensus 269 G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 269 GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 11 111333456775 5665555544 79999999886 1 1122221 1 11225667776666555544
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.10 E-value=56 Score=33.40 Aligned_cols=116 Identities=14% Similarity=0.021 Sum_probs=59.8
Q ss_pred CeEEEEeCCCCC-eEEEEecCCcEEEEEcCCce---EEEEEccCCCCCCCCCcccCceeeEEEeCC----CCEEEEeecC
Q 040987 396 PLLYFTESPDPS-LSSISCADNQVHLLKMPSME---IIRSISGIKLPCPLPEEYKGLCRDIAFNHD----GGLVALRAEN 467 (762)
Q Consensus 396 ~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d 467 (762)
....|+|.|||. .|+++...|.|++++..... .+..+..... .......+.....++++|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~-~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQ-SGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBC-CCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceec-cCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 357899999996 56666788999999754221 1111111000 0000011356788999996 4333332221
Q ss_pred ------------ceEEEEEcCCC--C-----ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 468 ------------YCIHFYSLLDD--R-----GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 468 ------------g~i~i~d~~~~--~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
..|.-|.+..+ . ....+..... ... ......|+|.|||.+.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~--~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHR--KHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSS--SSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCC--cccCCcEeECCCCcEEEEeC
Confidence 24545665432 1 1111111110 111 22367999999998777665
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=79.37 E-value=77 Score=34.55 Aligned_cols=259 Identities=8% Similarity=0.004 Sum_probs=126.2
Q ss_pred EEEE-eCCCCCeEEEEecCC-----cEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-----
Q 040987 398 LYFT-ESPDPSLSSISCADN-----QVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA----- 465 (762)
Q Consensus 398 ~~~~-~s~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----- 465 (762)
..+. ++|++++++.+-..| .++++|+.+++.+.. +. .. ...-.........++|..+ ..++.+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~--~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~ 207 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PI--TNSGKLLEGKFTYPTWINK-DTIIFNLVLHKN 207 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CB--CTTCCBCCEETCCEEEEET-TEEEECCCCSTT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cc--cccccccccccceeeEECC-CEEEEEeCCCCC
Confidence 3444 889999887764432 699999999876631 11 00 0000000011234577633 3344432
Q ss_pred ------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe-----EEEEeeeccccCCCceeEEEEE
Q 040987 466 ------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL-----MSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 466 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-----l~~~~~~~~~~~~~~d~~i~iw 534 (762)
....|+.|.+-+...-..+...... .........++++++ +++.+.+ -....+.+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~ 274 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPK-------EYIYVSAGKLLSDTISSSLIFISANKD------FYNYDNYIL 274 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCT-------TSCEEEEEESSCTTTCSSEEEEEEESS------SSCEEEEEE
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCC-------CceEEEEEEecCCCceEEEEEEEEecc------cCceeEEEE
Confidence 2246888887665433333222211 111234556677763 3322200 023566666
Q ss_pred EecCCCce-eEEEEEeecCCCCCceEEEEEcCCCCeEEEEe----------CCCcEEEEEcccccccccccCCceeeeee
Q 040987 535 VSGTQNKE-FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS----------YGGDFKVWICNDELQQKDLQSSGWSCHAV 603 (762)
Q Consensus 535 d~~~~~~~-~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 603 (762)
+....... ..+ ..+. .. .+..++++.+++... ..+.|.+.|+.++..... ....|....
T Consensus 275 ~~~~~~~~~~~l----~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~- 344 (711)
T 4hvt_A 275 DTKYKNLKLQKI----NMPS-DA---TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTES-DKTSLKILF- 344 (711)
T ss_dssp ECSSSSCEEEEC----CSCT-TC---EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGG-GCTTCEEEE-
T ss_pred cCCCCCCcceEe----ecCC-cc---eEeeeECCEEEEEECcccccccccCCCCeEEEEECCccccccc-ccccceEEE-
Confidence 65532221 222 1122 11 233455666665331 356788888876531000 000122211
Q ss_pred cccCCCCeEEEEEcCCCcEEEEEc-CC--eEEEEeCCCCe-EEEE-eccc-cCceeEEEEeCCCCEEE-EEE-cCCCCeE
Q 040987 604 GSYKKKAMTAAAFSADGSVLAVAA-ET--VITLWDPDRNV-LVAV-IGET-LTPIMNMSFVGSSEYLV-ATS-WGSKPQL 675 (762)
Q Consensus 604 ~~~~~~~i~~~~~s~dg~~la~~~-d~--~i~iwd~~~~~-~~~~-l~~~-~~~v~~~~~s~dg~~l~-s~~-~d~~~~v 675 (762)
.......+..+.|..+ .++++.. ++ .+.++++.+++ .... +.-. .+.+..+.+++++..++ +.+ ....+.+
T Consensus 345 ~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~ 423 (711)
T 4hvt_A 345 TPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTI 423 (711)
T ss_dssp CCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEE
T ss_pred CCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEE
Confidence 1223556778898876 4555554 54 57888877775 2222 2211 24566666777765444 333 3333468
Q ss_pred EEEECCCCce
Q 040987 676 SVWNMSKLSI 685 (762)
Q Consensus 676 ~vwd~~~~~~ 685 (762)
..+|+. ++.
T Consensus 424 ~~~d~~-~~~ 432 (711)
T 4hvt_A 424 YLWVKT-HEL 432 (711)
T ss_dssp EEECTT-SCE
T ss_pred EEEeCC-CcE
Confidence 888887 543
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.23 E-value=55 Score=32.26 Aligned_cols=183 Identities=9% Similarity=0.012 Sum_probs=94.3
Q ss_pred eEEEEecCCC--ceeccC-------CCCCCeEEEEeC---CC----CCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCC
Q 040987 376 VLVVWQLDTG--KKKFLP-------RIGSPLLYFTES---PD----PSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 376 ~i~~wd~~~~--~~~~~~-------~~~~~v~~~~~s---~~----~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
.|.+||+.++ +.+... .....+..+++. |+ +.+++.+. ..+.|.|||+.+++..+.+.....+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667777776 553211 123456777766 22 33444444 3568999999999888776432221
Q ss_pred CCC--------CCcccCceeeEEEeCC----CCEEEEeecCceEEEEEcC-----CCCceeeEEeecccccCCCCcceeE
Q 040987 439 CPL--------PEEYKGLCRDIAFNHD----GGLVALRAENYCIHFYSLL-----DDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 439 ~~~--------~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
... .......+..++++|+ ++.|....-.+ -++|.+. .......+..... . +....-
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~--k---g~~s~~ 277 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGN--R---GKYNDA 277 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEE--C---CTTCCE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeee--c---CCCCCc
Confidence 100 0001246788999997 67776665443 2233322 2211111111100 0 001234
Q ss_pred EEEEEe-cCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 502 TLVALS-QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 502 ~~~~~s-p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
..+++. .+|.++++-- ....|..|+..+ .-....+......+. -.....+.+.++|.+.+..+
T Consensus 278 ~~~~~D~~~G~ly~~~~---------~~~aI~~w~~~~~~~~~~n~~~l~~d~~-l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEA---------NTKQVSCWNTQKMPLRMKNTDVVYTSSR-FVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEEECTTTCEEEEEES---------SSSEEEEEETTSCSBCGGGEEEEEECTT-CCSEEEEEECTTSCEEEEEC
T ss_pred ceEEEeCCCCeEEEEec---------cCCeEEEEeCCCCccccCceEEEEECCC-ccccCeEEECCCCeEEEEEC
Confidence 456675 5676665554 778999999876 211111111111222 44567777777776555553
No 356
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=77.67 E-value=64 Score=33.70 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=46.5
Q ss_pred CCeEEEEEcCCCcEEEEEc-------------CCeEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEEEEcC
Q 040987 609 KAMTAAAFSADGSVLAVAA-------------ETVITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 609 ~~i~~~~~s~dg~~la~~~-------------d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s~~~d 670 (762)
.....|+|.++|.+.+... ...+..++..+++....+.+.. ..++.++|+||++.|+.+-..
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 4566899999998877432 1267888888888777775543 468999999999999888543
No 357
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=77.15 E-value=62 Score=34.18 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=44.4
Q ss_pred CeEEEEEcCCCcEEEEEc-C------------CeEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEEEE
Q 040987 610 AMTAAAFSADGSVLAVAA-E------------TVITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 610 ~i~~~~~s~dg~~la~~~-d------------~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s~~ 668 (762)
..-.|+|+|+|++++.-. + ..+.+.+..+++..+.+.++. ..++.++|+||++.|+..-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 345789999999666543 2 246777888888877776654 4599999999999988764
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.76 E-value=77 Score=30.48 Aligned_cols=199 Identities=11% Similarity=-0.007 Sum_probs=99.9
Q ss_pred CEEEEEecCCeEEEEecCCCce---------eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc---CC------ce
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKK---------KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM---PS------ME 427 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~---~~------~~ 427 (762)
..+++.+.+|.|+--.+.+.+. ......+..+..+........|+.-+..|.++.... .. |.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 4567777888887665432111 111122334544444444555665667776655443 21 22
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeC---CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNH---DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
.+..+-... ....|..+..-+ +..++++.+.+|.++-..+........-....-.. .. .+.+..+
T Consensus 84 ~i~~~l~l~--------~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~l---ke-~D~lv~~ 151 (327)
T 3uc1_A 84 HVANLLAFQ--------PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNL---RD-NDELVGA 151 (327)
T ss_dssp EHHHHTTCC--------TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBC---CT-TCCEEEE
T ss_pred EHHHccCCC--------CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEE---CC-CCEEEEE
Confidence 111111100 113444443333 57789999999999988875432221100000000 00 2334444
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEec--CCCce----eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG--TQNKE----FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGD 578 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~----~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~ 578 (762)
........++..+ ..|.+..+... .-... .-.....+ .. ...|.++...+++..++..+..|.
T Consensus 152 ~~~~~~d~ill~T---------~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~-~d~Vv~~~~~~~~~~ll~~T~~G~ 220 (327)
T 3uc1_A 152 VLCSAGDDLLLVS---------ANGQSIRFSATDEALRPMGRATSGVQGMRF-NI-DDRLLSLNVVREGTYLLVATSGGY 220 (327)
T ss_dssp EEECTTCEEEEEE---------TTSEEEEEECCTTTSCCCCTTSBCEESSCC-CT-TCCEEEEEECCTTCEEEEEETTSE
T ss_pred EEecCCCEEEEEE---------CCCeEEEEECcccccCcCCcCCCCeeeecC-CC-CCEEEEEEEECCCCEEEEEeCCCc
Confidence 4444445565555 66777777665 21110 00100001 12 456777766666678889999999
Q ss_pred EEEEEcccc
Q 040987 579 FKVWICNDE 587 (762)
Q Consensus 579 i~iwd~~~~ 587 (762)
++.-.+..-
T Consensus 221 ~Krt~l~e~ 229 (327)
T 3uc1_A 221 AKRTAIEEY 229 (327)
T ss_dssp EEEEEGGGS
T ss_pred EEEEEHHHc
Confidence 888876543
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.79 E-value=1.5e+02 Score=33.56 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=34.5
Q ss_pred eeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 652 IMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+.+++..++..++++-+.|++ +|+|++.+++++....+.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~--LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYK--LKVLDLSTNQCVETIELS 276 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCE--EEEEETTTTEEEEEEECC
T ss_pred EEEEeecCCCcEEEEEECCCE--EEEEECCCCCeEeeeccc
Confidence 677888889999999999998 999999999998887654
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.71 E-value=45 Score=37.96 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe
Q 040987 609 KAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 609 ~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l 645 (762)
..+.+++..++..++++-+ |+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4567788888888998888 999999999999998875
No 361
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=59.16 E-value=1.2e+02 Score=28.43 Aligned_cols=206 Identities=13% Similarity=0.054 Sum_probs=104.2
Q ss_pred cccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC
Q 040987 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT 292 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 292 (762)
||.|..|-....-.+ .........|..++...+-. ++. .++.|+.|-........ ....-...|..++...+
T Consensus 41 ~G~v~~wG~n~~Gql-g~p~~~~~~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg-----~P~~~~~~v~~ia~G~~ 112 (282)
T 3qhy_B 41 GGKVLGWGANLNGQL-TMPAATQSGVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTT-----VPAEARSGVDAIAAGAW 112 (282)
T ss_dssp TTEEEEEECCSSSTT-SCCGGGGSCCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTC-----CCGGGSSSEEEEEEETT
T ss_pred CCEEEEEeCCCCCCC-CCCccCCCCEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCC-----CCcccCCCeEEEECcCC
Confidence 788888865543333 12222334677777654433 333 49999999766543321 11111346777777655
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
.. +.-. ||.|+.|-......+. ........|..++... .+.+.-.
T Consensus 113 hs--~al~-~G~v~~wG~n~~gqlg------------------------------~~~~~~~~i~~i~~G~--~~~~~l~ 157 (282)
T 3qhy_B 113 AS--YALK-DGKVIAWGDDSDGQTT------------------------------VPAEAQSGVTALDGGV--YTALAVK 157 (282)
T ss_dssp EE--EEEE-TTEEEEEECCTTSTTS------------------------------CCGGGGSSEEEEEECS--SEEEEEE
T ss_pred EE--EEEe-CCeEEEecCCCCCcCC------------------------------CCccCCCCeEEEEccc--CEEEEEE
Confidence 43 2334 8999999653321110 0001123455555432 2333333
Q ss_pred cCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 373 KEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
||.++.|-......... ......|..++...+.. ++. .+|.++.|-......+. .+......|..
T Consensus 158 -~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg----------~p~~~~~~v~~ 223 (282)
T 3qhy_B 158 -NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT----------VPTEALSGVSA 223 (282)
T ss_dssp -TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC----------CCGGGGSSCCE
T ss_pred -CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC----------CCcccCCCceE
Confidence 68888886543222111 11234677776544332 333 58999999765421110 00001134556
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
++-.... .++. . ||.++.|=....
T Consensus 224 i~~G~~h-~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 224 IASGEWY-SLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp EEECSSC-EEEE-E-TTEEEEESTTCC
T ss_pred EEcCCCE-EEEE-E-CCEEEEecCCCC
Confidence 6544433 3333 3 899999976543
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=57.06 E-value=1.5e+02 Score=29.16 Aligned_cols=72 Identities=6% Similarity=-0.133 Sum_probs=36.7
Q ss_pred CCCceEEEECC--CCCEEEEEeCC----eEEEEEccCchhhhheeeee--eec--------cCcCeEEEEEcC-C-CcEE
Q 040987 235 MKEPQVITISS--SGKYFGIRKQR----KLLIWKVPDVEAERVVMRKI--TLH--------HTKKLTVLAFHP-T-QRIV 296 (762)
Q Consensus 235 ~~~v~~~~~sp--dg~~la~~~~~----~i~iwd~~~~~~~~~~~~~~--~~~--------~~~~v~~~~~sp-~-~~~l 296 (762)
...|.+|++.| ++.+.+++..+ .|... .+.++.- ...... +.. +...|.++++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNW-TEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCC-EECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCc-eECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 34588999998 66777766555 44333 2222211 011000 000 113577899987 2 4455
Q ss_pred EEeecCCeEEEE
Q 040987 297 AAGDVTGRILIW 308 (762)
Q Consensus 297 ~~~~~dg~v~vw 308 (762)
.++...+.|...
T Consensus 132 ~~g~~~ggl~~S 143 (394)
T 3b7f_A 132 YAGTSPQGLFRS 143 (394)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEecCCcEEEE
Confidence 655556655444
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=52.64 E-value=41 Score=35.52 Aligned_cols=59 Identities=19% Similarity=0.027 Sum_probs=43.9
Q ss_pred eEEEEeCCCCCeEEEEecC------------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 397 LLYFTESPDPSLSSISCAD------------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
.-.|+|+|+|.+++.-..+ +.+.+.+..+++..+.+.+... ..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g---------aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG---------CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT---------CEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC---------ccCcCeeECCCCCEEEEE
Confidence 4668999999976654322 2466677777888777776542 689999999999988765
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=51.73 E-value=18 Score=38.88 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=25.5
Q ss_pred eeEEeeecCCeEEEEeCCCcceEEEEEe
Q 040987 134 SYCWTASLDGTIKYWDFSVPELLKTIDV 161 (762)
Q Consensus 134 ~~l~s~s~d~~i~vWd~~~~~~~~~~~~ 161 (762)
.+|++-+.|.++|+||+.+++++.+...
T Consensus 232 ~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 232 RYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 6899999999999999999999988764
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.82 E-value=12 Score=43.64 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=32.6
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEe
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDV 161 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~ 161 (762)
.+.+++..++. +++++-+.|+++|||++.+++++.+...
T Consensus 239 ~~vs~~~~~~~-------~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTY-------NVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTT-------TEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCc-------cEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 45566667777 6899999999999999999999988653
No 366
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=49.55 E-value=2e+02 Score=28.20 Aligned_cols=159 Identities=9% Similarity=0.005 Sum_probs=83.3
Q ss_pred CCCCCEEE-EEeCCeEEEEEccCchhhhh---eeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecc
Q 040987 244 SSSGKYFG-IRKQRKLLIWKVPDVEAERV---VMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATN 319 (762)
Q Consensus 244 spdg~~la-~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~ 319 (762)
-|+..+++ .+.+|.|+--.+........ -.........+.+..+........|+..+..|.++-+....-....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~-- 81 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG-- 81 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC--
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC--
Confidence 36666665 66788888776654322100 0112222344556666555555667777778877766643221110
Q ss_pred cccccccccccccCCCCcccCCccccce---eeeccccceeEEEEe---cCCCEEEEEecCCeEEEEecCCCce------
Q 040987 320 DNKMNLNLMNNEEERPGVRDNDDADLCT---TWHWHPSEVSVLIFS---SDGAYLYSGGKEGVLVVWQLDTGKK------ 387 (762)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~s---~~g~~l~s~~~dg~i~~wd~~~~~~------ 387 (762)
....+.++. .+. ....|.++... .++.+|+.++..|.++...+.....
T Consensus 82 -------------------r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~ 141 (370)
T 3l6v_A 82 -------------------SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGK 141 (370)
T ss_dssp -------------------TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCE
T ss_pred -------------------cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCce
Confidence 000111111 122 22344444332 2456899999999999887653221
Q ss_pred -eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 388 -KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 388 -~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
......+..+..+....+...++..+..|.+..+...
T Consensus 142 ~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 142 IAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp ESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred EEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 1111224455555554455567777788887777654
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=47.60 E-value=40 Score=35.21 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=37.0
Q ss_pred ceeecCCCEEEEEeC-------------CEEEEEEcccceEEeeecCC-ccceeEEEEeCCCC
Q 040987 79 PAFSNDVKRLLVCTS-------------NTVSIFSTSTGLQISSLEGH-KAPVTTVIVVPAST 127 (762)
Q Consensus 79 ~~~s~dg~~la~~~~-------------~~i~iwd~~~~~~~~~l~~h-~~~V~~v~~s~~~~ 127 (762)
|+|.++|.+.+.... +.|..++..+|++.+.+.+. ...++.++|+||++
T Consensus 481 L~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~k 543 (592)
T 4a9v_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSS
T ss_pred eEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCC
Confidence 789999977663321 27888888889877777654 45799999999994
No 368
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=45.72 E-value=98 Score=23.60 Aligned_cols=73 Identities=5% Similarity=-0.049 Sum_probs=35.9
Q ss_pred EEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeC
Q 040987 45 IFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVP 124 (762)
Q Consensus 45 ~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~ 124 (762)
+-.+-..||.+.+|+-.+.--..-......-.+.+.+..||.+++.-.++. .||...+.. ......+..-+
T Consensus 21 y~l~~q~DgNLvly~~~~~vW~ant~~~~~~~~~L~l~~dGnLvL~d~~~~-~vWss~t~~--------~~~~~~l~L~d 91 (105)
T 4h3o_A 21 YHFIMQDDCNLVLYDHSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDSSGR-SLWASHSTR--------GSGNYILILQD 91 (105)
T ss_dssp EEEEECTTSCEEEEETTEEEEECCCCCTTCCSCEEEECTTSCEEEECTTCC-EEEECCCCC--------CSSCEEEEECT
T ss_pred EEEEECCCCeEEEEECCEEEEEecCCCCCCccEEEEEeCCccEEEECCCcE-EEEEecCCC--------CCCCEEEEEeC
Confidence 444556677777776332111111111111112277888888777655444 478754321 11223455677
Q ss_pred CC
Q 040987 125 AS 126 (762)
Q Consensus 125 ~~ 126 (762)
||
T Consensus 92 dG 93 (105)
T 4h3o_A 92 DG 93 (105)
T ss_dssp TS
T ss_pred CC
Confidence 77
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.64 E-value=2e+02 Score=33.44 Aligned_cols=41 Identities=27% Similarity=0.261 Sum_probs=34.7
Q ss_pred eeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 652 IMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
+.+++..++..+|++-+.|++ +|+|++.+++++....+...
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~--LRiWsl~t~~~v~t~DL~~~ 280 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYK--LKVLDLSTNQCVETIELSQT 280 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCE--EEEEETTTTEEEEEEECCCS
T ss_pred eEEeeccCCccEEEEEeCCCE--EEEEECCCCCeEEeechhhc
Confidence 556677788899999999998 99999999999888776533
No 370
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=41.06 E-value=1.2e+02 Score=23.40 Aligned_cols=53 Identities=4% Similarity=-0.017 Sum_probs=29.0
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccC
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPD 265 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~ 265 (762)
.||.+.+|+...+..+-.........-..+.+..+|++++...++.+ +|...+
T Consensus 32 ~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 32 DDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred CCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 56777777653333331111111122356788888888876555543 777554
No 371
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=40.64 E-value=2.7e+02 Score=27.27 Aligned_cols=118 Identities=7% Similarity=0.027 Sum_probs=54.9
Q ss_pred cceeEEEEec-CCCEEEEEecCC----eEEEEecCCCce-eccC------CC--------CCCeEEEEeCCC--CCeEEE
Q 040987 354 SEVSVLIFSS-DGAYLYSGGKEG----VLVVWQLDTGKK-KFLP------RI--------GSPLLYFTESPD--PSLSSI 411 (762)
Q Consensus 354 ~~v~~~~~s~-~g~~l~s~~~dg----~i~~wd~~~~~~-~~~~------~~--------~~~v~~~~~s~~--~~~l~~ 411 (762)
..|.++++.| +...|+.++..+ .|...+ +.++. .... .. ...|.++++.|. ...+++
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4688999988 233444454444 444432 22221 1111 11 124677888872 456666
Q ss_pred EecCCcEEEEEcCCceEEEEEccCCC-CCC--------CCCcccCceeeEEEeCC-CCEEEEeecCceEEEE
Q 040987 412 SCADNQVHLLKMPSMEIIRSISGIKL-PCP--------LPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFY 473 (762)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~--------~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~ 473 (762)
+...+.|...+- .++....+..... +.. ........+.++.++|. ...|.++..++.|...
T Consensus 134 g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 134 GTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFES 204 (394)
T ss_dssp EEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEE
T ss_pred EecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEE
Confidence 666665554432 2333222221000 000 00001135778999883 4456666555544433
No 372
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=40.31 E-value=2.4e+02 Score=26.62 Aligned_cols=121 Identities=7% Similarity=-0.042 Sum_probs=68.9
Q ss_pred cCcCeEEEEEc---CCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 280 HTKKLTVLAFH---PTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 280 ~~~~v~~~~~s---p~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
....|.++..- .++.+++..+.+|.++.-.+..-.... ..+.....+..+ +.+
T Consensus 93 ~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~-----------------------r~G~~~i~l~~~-d~l 148 (307)
T 1zi0_A 93 QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR-----------------------TAGKVAIKLVDG-DEL 148 (307)
T ss_dssp TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC-----------------------TTCEESSCCCTT-CCE
T ss_pred CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc-----------------------cCCeEEEEECCC-CEE
Confidence 34456665432 355678888999999998764321110 001111223333 445
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCCCce-------e--ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-------K--FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-------~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
..+....+...++..+.+|.+..++...-.. . .....+..|.++....++..+++.+..|.++-.++.
T Consensus 149 v~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 149 IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 5554444555677778888888777643211 1 112234566666655555667777888888877664
No 373
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=39.41 E-value=2.4e+02 Score=26.20 Aligned_cols=192 Identities=8% Similarity=-0.038 Sum_probs=102.2
Q ss_pred ECCCCCEEEEEeCCeEEEE---EccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeec
Q 040987 243 ISSSGKYFGIRKQRKLLIW---KVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFAT 318 (762)
Q Consensus 243 ~spdg~~la~~~~~~i~iw---d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~ 318 (762)
.+....++...+.|.++-- +++..... .+ ......|..+.... +..+++..+.+|.++...+..-. ..
T Consensus 32 ~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~-----~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~- 103 (276)
T 3no0_A 32 VPFTEGLFLVSNRGRVYWIAGSQALQGSKV-----SL-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YK- 103 (276)
T ss_dssp EETTSCEEEEETTSEEEEECSHHHHTSEEC-----CC-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TC-
T ss_pred ECCCCEEEEEcCCCeEEEEEhhhCccCccc-----cc-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hh-
Confidence 3344455566777776543 33322211 12 33455666664421 46789999999999999875432 00
Q ss_pred ccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---------ec
Q 040987 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---------KF 389 (762)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---------~~ 389 (762)
..+.....+.. .+.+..+....+...++..+..|.+..++...-.. ..
T Consensus 104 ----------------------~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i 160 (276)
T 3no0_A 104 ----------------------AQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGI 160 (276)
T ss_dssp ----------------------STTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECC
T ss_pred ----------------------cCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEE
Confidence 00011112222 23444444444556788888889888776543211 11
Q ss_pred cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce-------EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE
Q 040987 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME-------IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA 462 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 462 (762)
....+..+..+...+++..++..+..|.++...+.... -+..+ .. .+.+..+....+...++
T Consensus 161 ~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~----------~~~lv~~~~~~~~~~i~ 229 (276)
T 3no0_A 161 KLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GT----------KDTLVDLIPIKEEVELL 229 (276)
T ss_dssp CCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CS----------SSCEEEEEEESSEEEEE
T ss_pred ccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cC----------CCcEEEEEEeCCCCEEE
Confidence 12223556666555566678888889988888765321 11112 00 13344443333344566
Q ss_pred EeecCceEEE--EEcC
Q 040987 463 LRAENYCIHF--YSLL 476 (762)
Q Consensus 463 ~~~~dg~i~i--~d~~ 476 (762)
..+.+|.+.. ++..
T Consensus 230 ~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 230 ITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEETTSCEEEEEEEGG
T ss_pred EEcCCCeEEEeeeCHH
Confidence 6667777666 6654
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=36.07 E-value=2.8e+02 Score=26.15 Aligned_cols=215 Identities=7% Similarity=-0.064 Sum_probs=100.0
Q ss_pred CCCCeEEEEecCCcEEEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC---CCC
Q 040987 404 PDPSLSSISCADNQVHLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL---DDR 479 (762)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~---~~~ 479 (762)
|+...+++.+.+|.|+--.+...+..+.- .+.. .........+..+........|+..+..|.++-+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~---~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKS---AARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC-----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCce---eeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCC
Confidence 34566778889999987776543222110 0000 0000001344455555556677777888887666543 221
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEe---cCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--EEEEEeecCCC
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALS---QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF--TLSTIVYEPHR 554 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~h~ 554 (762)
... .-........... ...|..+..- .++.+++..+ ..|.++-..+..-.... -+....+..
T Consensus 78 ~~a-~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T---------~~G~~Krt~l~e~~~~~r~G~~~i~l~~-- 144 (307)
T 1zi0_A 78 RGA-RGRPIVNLLPLEQ-DERITAILPVTEFEEGVKVFMAT---------ANGTVKKTVLTEFNRLRTAGKVAIKLVD-- 144 (307)
T ss_dssp SSS-CCEEGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEE---------TTSEEEEEEGGGGTTCCTTCEESSCCCT--
T ss_pred CCC-CCeEhhhccCCCC-CCEEEEEEEeccCCCCcEEEEEe---------CCCeEEEEEHHHhhccccCCeEEEEECC--
Confidence 100 0000000000011 2335444332 3456677777 77899888775322111 111111112
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITL 633 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~i 633 (762)
.+.+..+....+...++..+.+|.+..++...-...... .-......-.....|.++...+++..+++.+ .|.++-
T Consensus 145 ~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~---a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 221 (307)
T 1zi0_A 145 GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN---TTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKR 221 (307)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT---CCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCC---CCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEE
Confidence 234555544445556777888888877776532211110 0000000111345666665555555566665 788887
Q ss_pred EeCC
Q 040987 634 WDPD 637 (762)
Q Consensus 634 wd~~ 637 (762)
.++.
T Consensus 222 ~~~~ 225 (307)
T 1zi0_A 222 TAVA 225 (307)
T ss_dssp ECGG
T ss_pred EEHH
Confidence 7764
No 375
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=32.18 E-value=3.4e+02 Score=25.87 Aligned_cols=206 Identities=9% Similarity=0.021 Sum_probs=102.6
Q ss_pred CCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccc
Q 040987 245 SSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKM 323 (762)
Q Consensus 245 pdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~ 323 (762)
|+..+++ .+.+|.|+--.+...... ..........+.+..+........|+..+..|.+.-+....-....
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~--~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~------ 74 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAAS--NGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIR------ 74 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHT--TTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCC------
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhc--CccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCC------
Confidence 4455554 567888887765533211 0001112233445555444455567777788887766653221110
Q ss_pred cccccccccCCCCcccCCccccce---eeeccccceeEE-EEec--CCCEEEEEecCCeEEEEecCCCce--------ec
Q 040987 324 NLNLMNNEEERPGVRDNDDADLCT---TWHWHPSEVSVL-IFSS--DGAYLYSGGKEGVLVVWQLDTGKK--------KF 389 (762)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~-~~s~--~g~~l~s~~~dg~i~~wd~~~~~~--------~~ 389 (762)
....+.++. .+. ....|..+ .... ++.+++.++..|.++...+..-.. ..
T Consensus 75 ---------------r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai 138 (323)
T 1wp5_A 75 ---------------WKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGI 138 (323)
T ss_dssp ---------------TTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECS
T ss_pred ---------------CCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEE
Confidence 000111111 122 12234443 3322 256788999999999887642211 11
Q ss_pred cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecC
Q 040987 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAEN 467 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d 467 (762)
....+..+..+........++..+.+|.+..+....-..... -.+-. .+.. .....|.++..-+++. .+++.+..
T Consensus 139 ~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~-~i~L--~~~d~Vv~~~~~~~~~~~ll~vt~~ 215 (323)
T 1wp5_A 139 NLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVK-GMNL--KEGDYIVSGQLITSKDESIVVATQR 215 (323)
T ss_dssp CCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEE-CCCC--CTTCCEEEEEEECCTTCEEEEEETT
T ss_pred EeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEE-EEEe--CCCCEEEEEEEEcCCCcEEEEEECC
Confidence 112235555555545556677777888888887653111100 00000 0000 0114455665444444 78888888
Q ss_pred ceEEEEEcCC
Q 040987 468 YCIHFYSLLD 477 (762)
Q Consensus 468 g~i~i~d~~~ 477 (762)
|..+..++..
T Consensus 216 G~gKr~~~~e 225 (323)
T 1wp5_A 216 GAVKKMKLTE 225 (323)
T ss_dssp SEEEEEEGGG
T ss_pred CceEEEEHHH
Confidence 8887777654
No 376
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=28.94 E-value=3.8e+02 Score=25.36 Aligned_cols=209 Identities=11% Similarity=-0.030 Sum_probs=103.2
Q ss_pred cCCCEEEEEecCCeEEEEecCCCceec---------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE-EEE
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKKKF---------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII-RSI 432 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~ 432 (762)
++...+++.+.+|.|+--.+..-+... ....+..+..+........++..+..|.++-+....-... +.-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456678888999999888765432211 1122344555444444556666678887766655321110 000
Q ss_pred ccCCCCCCCCCcccCceeeEEEeC---CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNH---DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.|..............+..+...+ +..+++..+.+|.++...+..-..........-.. .. ...+..+....+
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L---~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL---ND-KDFVTSAEIVFK 161 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC---CT-TCCEEEEEEECT
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec---CC-CCEEEEEEEeCC
Confidence 110000000001113444443333 46678888999999988775432111000000000 01 233444444444
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCce----eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE----FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
+..++..+ ..|.+..+....-... .-.....+. . ...|.++..-+++..+++.+..|..+..++.
T Consensus 162 ~~~i~l~T---------~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 162 DEKVICLS---------KKGSAFIFNSRDVRLTNRGTQGVCGMKLK-E-GDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TCEEEEEE---------TTSEEEEEEGGGSCBCCTTBCCEECCCCC-T-TCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEe---------CCCcEEEEEHHHccccCCCCCCeEeEEeC-C-CCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 45566665 6778888877542111 001111111 1 3456666555556678888889988888876
Q ss_pred c
Q 040987 586 D 586 (762)
Q Consensus 586 ~ 586 (762)
.
T Consensus 231 e 231 (312)
T 1suu_A 231 K 231 (312)
T ss_dssp G
T ss_pred H
Confidence 4
No 377
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=27.93 E-value=2e+02 Score=21.83 Aligned_cols=47 Identities=11% Similarity=0.268 Sum_probs=28.6
Q ss_pred eEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 239 QVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 239 ~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
..+.+..||++++...++. .+|...+... .....+...+||++++.+
T Consensus 53 ~~L~l~~dGnLvL~d~~~~-~vWss~t~~~-------------~~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSGR-SLWASHSTRG-------------SGNYILILQDDGNVIIYG 99 (105)
T ss_dssp CEEEECTTSCEEEECTTCC-EEEECCCCCC-------------SSCEEEEECTTSCEEEEE
T ss_pred EEEEEeCCccEEEECCCcE-EEEEecCCCC-------------CCCEEEEEeCCCeEEEEC
Confidence 4688889998877655544 4676543221 122345667788777664
No 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=25.29 E-value=4.5e+02 Score=25.06 Aligned_cols=214 Identities=12% Similarity=0.057 Sum_probs=106.0
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEE---ecCCC------cee-cc--CCCCCCeEEEEe-CC--CCCeEEEEecCCcE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVW---QLDTG------KKK-FL--PRIGSPLLYFTE-SP--DPSLSSISCADNQV 418 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~w---d~~~~------~~~-~~--~~~~~~v~~~~~-s~--~~~~l~~~~~d~~i 418 (762)
+.+..+........|+.-+..|.++.. ++... ..+ .+ ...+..|..+.. .. +...++..+.+|.+
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444445566666666765544 33322 221 11 123445665543 32 57789999999999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC--CCCceeeEEeecccc--cCC
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL--DDRGISEVQVCERNH--QPG 494 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~--~~~ 494 (762)
+...+......+. .+.. .....+ ...+..+........|+..+..|.+..+... .-..... ...+. ...
T Consensus 122 Kr~~l~~~~~~~r-~G~~-~i~lke--~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr---~a~Gv~~i~L 194 (327)
T 3uc1_A 122 KKSKLTDFDSNRS-GGIV-AVNLRD--NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGR---ATSGVQGMRF 194 (327)
T ss_dssp EEEEGGGGCCCCS-SCEE-SCBCCT--TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCT---TSBCEESSCC
T ss_pred EEeEHHHhhcccc-CceE-EEEECC--CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCc---CCCCeeeecC
Confidence 9888765322111 0000 000000 1455555555566678888899988888776 2111100 00000 000
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce----eEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE----FTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
. ....|..+...+++.+++..+ ..|.++.-.+..-... .-+....+... .+.+..+....+...+
T Consensus 195 ~-~~d~Vv~~~~~~~~~~ll~~T---------~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~-~d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 195 N-IDDRLLSLNVVREGTYLLVAT---------SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR-RGRLVGALIVDDDSEL 263 (327)
T ss_dssp C-TTCCEEEEEECCTTCEEEEEE---------TTSEEEEEEGGGSCBCCTTSCCEESSCCCTT-TCSEEEEEEECTTCEE
T ss_pred C-CCCEEEEEEEECCCCEEEEEe---------CCCcEEEEEHHHccccCcCCCcEEEEEecCC-CCeEEEEEEeCCCccE
Confidence 0 034466666656666777777 6788887776532211 00111111111 2234443333344455
Q ss_pred EEEeCCCcEEEEEcc
Q 040987 571 VSSSYGGDFKVWICN 585 (762)
Q Consensus 571 ~~~~~dg~i~iwd~~ 585 (762)
+..+.+|.+..++..
T Consensus 264 ~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 264 YAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEGGGCEEEEEGG
T ss_pred EEEcCCCeEEEEehh
Confidence 556667776666654
No 379
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.45 E-value=4.8e+02 Score=24.77 Aligned_cols=211 Identities=8% Similarity=-0.067 Sum_probs=101.3
Q ss_pred CCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC---CCc
Q 040987 404 PDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD---DRG 480 (762)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~ 480 (762)
|+...+++.+.+|.|+--.+...+.. + ...... .-...+..+........|+..+..|.++-+.... ...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~----~-~~~~~l--ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r 75 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAAS----N-GQDFAM--KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW 75 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHT----T-TCCCCC--CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhc----C-cccccc--CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC
Confidence 45667788889998887655421110 0 000000 0113455555555566777778888876665432 110
Q ss_pred eeeEEeecccccCCCCcceeEEEE-EEec--CCCeEEEEeeeccccCCCceeEEEEEEecCCCcee---EEEEEeecCCC
Q 040987 481 ISEVQVCERNHQPGDDVTVVVTLV-ALSQ--DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF---TLSTIVYEPHR 554 (762)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~v~~~-~~sp--~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~h~ 554 (762)
... -.+......... ...|..+ ...+ ++.+++..+ ..|.++-..+..-.... -+....+. .
T Consensus 76 ~a~-G~~i~~~i~L~~-~e~Iv~~~~~~~~~~~~~ll~~T---------~~G~iKrt~l~e~~~~~r~~G~~ai~l~-e- 142 (323)
T 1wp5_A 76 KDL-GQHIANIIPIDR-DEEIIKAIPINDFELNGYFLFVT---------RNGMVKKTELKHYKAQRYSKPLTGINLK-N- 142 (323)
T ss_dssp TSC-CEEGGGTSCCCT-TCCEEEEEEESCTTSSCEEEEEE---------TTSEEEEEEGGGGCCSCCSSCEECSCCC-T-
T ss_pred CCC-CcChhhccCCCC-CCEEEEEEEecccCCCceEEEEe---------CCCeEEEeEHHHhhhccccCceEEEEeC-C-
Confidence 000 000000000011 2334444 3332 256777777 78899988875322211 11111111 1
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec-ccCCCCeEEEEEcCCCc-EEEEEc-CCeE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG-SYKKKAMTAAAFSADGS-VLAVAA-ETVI 631 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~dg~-~la~~~-d~~i 631 (762)
.+.+..+....+...++..+.+|.+..++...-...... -...... -.....|.++..-+++. .|.+.+ .|..
T Consensus 143 ~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~----a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~g 218 (323)
T 1wp5_A 143 DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR----AAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAV 218 (323)
T ss_dssp TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS----CCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC----CcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCce
Confidence 345555555555567778888998888877542211110 0000001 11234566665444444 455554 7777
Q ss_pred EEEeCCC
Q 040987 632 TLWDPDR 638 (762)
Q Consensus 632 ~iwd~~~ 638 (762)
+..++..
T Consensus 219 Kr~~~~e 225 (323)
T 1wp5_A 219 KKMKLTE 225 (323)
T ss_dssp EEEEGGG
T ss_pred EEEEHHH
Confidence 7766643
No 380
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.40 E-value=2.8e+02 Score=21.24 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=15.5
Q ss_pred ceeecCCCEEEEEeCCEEEEEEc
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFST 101 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~ 101 (762)
+.+..||.+++...++.+.||..
T Consensus 54 l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 54 LRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEcCCCcEEEEeCCCCEEEEEe
Confidence 67788888777655555557754
Done!