BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040989
(700 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6HP56|LIS11_PENCW Nuclear distribution protein nudF 1 OS=Penicillium chrysogenum
(strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255)
GN=nudF-1 PE=3 SV=1
Length = 458
Score = 36.2 bits (82), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 426 PDSPKAVLFLAHGCNGRAVHFWDRSPNCPNCIGLPEE--RLLVLHALSRGFAIITISSAG 483
P + + F+A G + + WD NC + + R LV H + ++
Sbjct: 321 PPASSSAEFVATGSRDKTIRLWDTRGNCIKTLVGHDNWVRSLVFHPGGKYLLSVSDDKTL 380
Query: 484 RCWTLGEERLVVREIIRWWVERHKLEKL----PLVA-LGASSGGYFVSALAKGLRFS--- 535
RCW L +E VR I+ H + L PLV GA+ G A + G +
Sbjct: 381 RCWDLTQECKCVRTIV---AHGHFISSLRWAPPLVKDAGANEGANGTEAASNGAKEDATK 437
Query: 536 -SIALMIAEGLFD 547
SI ++A G D
Sbjct: 438 MSIRCVLATGSVD 450
>sp|Q6A7A2|DNLJ_PROAC DNA ligase OS=Propionibacterium acnes (strain KPA171202 / DSM
16379) GN=ligA PE=3 SV=1
Length = 772
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 409 LNPTVELRNGTDVIWQIPDS-PKAVLFLAHGCNGRAVHFWDRSPNCPNCIGLPEERLLVL 467
L P VELRNGT+ + +PD P LA+ NG D+ CPN G P + L
Sbjct: 434 LGPVVELRNGTEREFLMPDHCPSCGAELAYEKNG------DKDLRCPNAQGCPSQ----L 483
Query: 468 HALSRGFA 475
H G A
Sbjct: 484 HERVFGLA 491
>sp|C0QQ35|MURI_PERMH Glutamate racemase OS=Persephonella marina (strain DSM 14350 /
EX-H1) GN=murI PE=3 SV=1
Length = 259
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 556 PPTLFVHMPKDSYRQRKIGEFLVV-----LRNKGIDVAEIECMEFPLSRNFFTDRIPGLE 610
P LFV + ++ KI E V + +KGID + C +PL ++ P L
Sbjct: 139 PCPLFVPLVEEGLIDHKITELTVKEYLDDIVSKGIDTLILGCTHYPLLKDVIKKIYPHLN 198
Query: 611 QANSTKLFELFQEKGFIDENG 631
+S+K L+ +K +D NG
Sbjct: 199 IIDSSKATALYLKKKNLDLNG 219
>sp|Q600P9|RSMH_MYCH2 Ribosomal RNA small subunit methyltransferase H OS=Mycoplasma
hyopneumoniae (strain 232) GN=rsmH PE=3 SV=1
Length = 296
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 242 AANIEVSEQQDDIQRLDLSQDDCGDKLPIRRSNTRSAAINPFHSYEDIVCGKTFTSKKDL 301
A IEV+ + D +Q+L +KLP AI FHS ED + K F DL
Sbjct: 201 AVRIEVNNELDSLQKL-------LEKLPKFLKQGSKVAIITFHSLEDRIVKKAFL---DL 250
Query: 302 IKKLKLGAAKK---NFAFKVSKSTKDRFEVVCADTNCKWRL 339
I+K KL +K F+ KV + + + + K RL
Sbjct: 251 IRKDKLEFFQKGLPKFSMKVFRPKANELKSNPRAKSAKLRL 291
>sp|Q4A9T0|RSMH_MYCHJ Ribosomal RNA small subunit methyltransferase H OS=Mycoplasma
hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)
GN=rsmH PE=3 SV=1
Length = 296
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 242 AANIEVSEQQDDIQRLDLSQDDCGDKLPIRRSNTRSAAINPFHSYEDIVCGKTFTSKKDL 301
A IEV+ + D +Q+L +KLP AI FHS ED + K F DL
Sbjct: 201 AVRIEVNNELDSLQKL-------LEKLPKFLKQGSKVAIITFHSLEDRIVKKAFL---DL 250
Query: 302 IKKLKLGAAKK---NFAFKVSKSTKDRFEVVCADTNCKWRL 339
I+K KL +K F+ KV + + + + K RL
Sbjct: 251 IRKDKLEFFQKGLPKFSMKVFRPKANELKSNPRAKSAKLRL 291
>sp|Q4A7X8|RSMH_MYCH7 Ribosomal RNA small subunit methyltransferase H OS=Mycoplasma
hyopneumoniae (strain 7448) GN=rsmH PE=3 SV=1
Length = 296
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 242 AANIEVSEQQDDIQRLDLSQDDCGDKLPIRRSNTRSAAINPFHSYEDIVCGKTFTSKKDL 301
A IEV+ + D +Q+L +KLP AI FHS ED + K F DL
Sbjct: 201 AVRIEVNNELDSLQKL-------LEKLPKFLKQGSKVAIITFHSLEDRIVKKAFL---DL 250
Query: 302 IKKLKLGAAKK---NFAFKVSKSTKDRFEVVCADTNCKWRL 339
I+K KL +K F+ KV + + + + K RL
Sbjct: 251 IRKDKLEFFQKGLPKFSMKVFRPKANELKSNPRAKSAKLRL 291
>sp|P0C026|NUD24_ARATH Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24
PE=2 SV=1
Length = 365
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 23/130 (17%)
Query: 558 TLFVHMPKDSYRQRKIGEFLVVLRNKGIDVAEIECMEFPLSRNFFTDRIPGLEQANSTKL 617
TL + + K R R + + +L NKGI + I +P+ +F +E+A +
Sbjct: 134 TLNMMLDKPEERTRAVAHVIKILGNKGI-IPGIRNELYPVKPSFNAPAFFSIERAAAP-- 190
Query: 618 FELFQEKGF-IDENGYMRSDGRRTRW--KEALRES---------------NAIFLNKNLV 659
F KG+ I NGY+ DG++ W K +L +S + I + +NLV
Sbjct: 191 --YFGLKGYAIHVNGYVERDGQKFLWIGKRSLAKSTYPGKLDHLVAGGLPHGISVCENLV 248
Query: 660 HHVQEELNLA 669
+EE ++
Sbjct: 249 KECEEEAGIS 258
>sp|Q74AE2|LIPB_GEOSL Octanoyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573
/ DSM 12127 / PCA) GN=lipB PE=3 SV=1
Length = 227
Score = 33.1 bits (74), Expect = 7.6, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 413 VELRNGTDVIWQIPDSPKAVLFLAHGCNGRAVHFWDRSPNCPNCIGLPEERLLVLHALSR 472
VE+ G DV W P L GC GR +H + R E++L+ A S
Sbjct: 54 VEINRGGDVTWHGPGQLVGYPILDLGCRGRDLHRYLRF----------LEQVLMDAAASL 103
Query: 473 GFAIITISSAGRCWTLGEERLVVREIIRWWVERH 506
G ++ WT G + + +R WV H
Sbjct: 104 GVQAWRVAGRTGIWTEGGKLASIGVGVRRWVTMH 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,197,040
Number of Sequences: 539616
Number of extensions: 11778848
Number of successful extensions: 29405
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 29396
Number of HSP's gapped (non-prelim): 22
length of query: 700
length of database: 191,569,459
effective HSP length: 125
effective length of query: 575
effective length of database: 124,117,459
effective search space: 71367538925
effective search space used: 71367538925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)