Query 040990
Match_columns 133
No_of_seqs 183 out of 866
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2628 Farnesyl cysteine-carb 99.9 6.7E-28 1.4E-32 190.4 2.3 110 20-133 66-175 (201)
2 PF04140 ICMT: Isoprenylcystei 99.9 7.9E-26 1.7E-30 159.7 6.5 85 46-133 3-89 (94)
3 COG2020 STE14 Putative protein 99.8 3.7E-20 7.9E-25 144.1 10.2 97 35-133 64-160 (187)
4 PF04191 PEMT: Phospholipid me 99.8 8.7E-20 1.9E-24 127.7 7.8 93 41-133 3-95 (106)
5 COG1755 Uncharacterized protei 99.7 4.1E-16 9E-21 120.9 9.5 89 43-133 73-162 (172)
6 PF06966 DUF1295: Protein of u 98.9 6.4E-09 1.4E-13 83.5 7.3 66 41-111 121-186 (235)
7 COG3752 Steroid 5-alpha reduct 98.1 1.5E-05 3.2E-10 66.1 7.3 65 43-112 152-216 (272)
8 KOG4650 Predicted steroid redu 97.9 3.6E-05 7.8E-10 64.2 7.1 69 41-110 177-245 (311)
9 PF01222 ERG4_ERG24: Ergostero 97.9 7.2E-05 1.6E-09 65.5 8.4 35 75-109 346-380 (432)
10 KOG4142 Phospholipid methyltra 97.4 0.00061 1.3E-08 53.9 6.4 86 40-133 97-189 (208)
11 PF07298 NnrU: NnrU protein; 97.1 0.0018 3.9E-08 51.1 6.6 40 85-124 96-135 (191)
12 PF02544 Steroid_dh: 3-oxo-5-a 97.0 0.0065 1.4E-07 45.7 8.7 71 39-114 40-110 (150)
13 KOG1435 Sterol reductase/lamin 96.9 0.002 4.2E-08 56.8 5.4 39 75-113 342-382 (428)
14 PLN02797 phosphatidyl-N-dimeth 96.8 0.0072 1.6E-07 47.0 7.8 67 42-109 67-133 (164)
15 PLN02392 probable steroid redu 96.1 0.048 1.1E-06 45.3 8.9 69 40-114 151-219 (260)
16 PLN02560 enoyl-CoA reductase 94.2 0.29 6.4E-06 41.3 8.2 71 40-115 193-264 (308)
17 COG4094 Predicted membrane pro 92.5 0.14 3.1E-06 41.5 3.4 54 79-132 97-150 (219)
18 KOG1638 Steroid reductase [Lip 90.3 0.82 1.8E-05 38.1 5.8 70 40-114 148-217 (257)
19 PLN03164 3-oxo-5-alpha-steroid 86.1 3.8 8.2E-05 35.3 7.3 65 42-109 212-276 (323)
20 PF12270 Cyt_c_ox_IV: Cytochro 73.4 38 0.00083 25.8 8.6 79 37-122 38-121 (137)
21 PHA00739 V3 structural protein 57.2 4.1 9E-05 28.9 0.4 43 87-133 50-92 (92)
22 PF06281 DUF1035: Protein of u 56.5 4.7 0.0001 27.5 0.5 43 87-133 31-73 (73)
23 KOG1640 Predicted steroid redu 52.7 34 0.00073 29.3 5.1 38 75-112 225-262 (304)
24 PRK07758 hypothetical protein; 52.4 7.5 0.00016 28.0 1.1 22 3-24 19-40 (95)
25 KOG4812 Golgi-associated prote 43.2 1.2E+02 0.0027 25.4 6.9 82 26-113 159-243 (262)
26 KOG1639 Steroid reductase requ 42.5 50 0.0011 28.0 4.6 35 81-115 224-259 (297)
27 KOG3269 Predicted membrane pro 39.5 1.8E+02 0.004 23.2 7.1 88 30-121 44-133 (180)
28 COG4311 SoxD Sarcosine oxidase 34.9 19 0.00042 26.0 0.9 21 1-21 1-21 (97)
29 PF12650 DUF3784: Domain of un 33.5 39 0.00085 23.1 2.3 57 43-102 3-59 (97)
30 PF13696 zf-CCHC_2: Zinc knuck 32.8 22 0.00047 20.7 0.7 12 3-14 8-19 (32)
31 PF01004 Flavi_M: Flavivirus e 31.5 70 0.0015 21.9 3.2 20 88-108 36-55 (75)
32 PHA02513 V1 structural protein 31.1 53 0.0011 24.7 2.7 12 81-97 94-105 (135)
33 PRK00398 rpoP DNA-directed RNA 29.3 27 0.00058 21.0 0.8 11 1-11 1-11 (46)
34 PF13894 zf-C2H2_4: C2H2-type 28.8 25 0.00055 17.0 0.5 8 4-11 1-8 (24)
35 COG4049 Uncharacterized protei 26.7 13 0.00027 24.8 -1.1 18 4-21 18-35 (65)
36 PF13909 zf-H2C2_5: C2H2-type 24.8 33 0.00072 17.4 0.5 8 4-11 1-8 (24)
37 COG0641 AslB Arylsulfatase reg 24.6 29 0.00062 30.2 0.4 13 4-16 20-32 (378)
38 PF01102 Glycophorin_A: Glycop 24.0 1.4E+02 0.003 22.2 3.9 20 112-131 75-94 (122)
39 PF15345 TMEM51: Transmembrane 23.4 90 0.0019 25.8 3.0 70 36-110 5-75 (233)
40 PF07508 Recombinase: Recombin 22.3 19 0.00041 24.1 -0.9 22 78-99 38-59 (102)
41 PF00098 zf-CCHC: Zinc knuckle 22.2 65 0.0014 16.0 1.3 13 5-17 2-14 (18)
42 PF05605 zf-Di19: Drought indu 20.5 46 0.001 20.5 0.6 9 3-11 2-10 (54)
No 1
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.7e-28 Score=190.35 Aligned_cols=110 Identities=31% Similarity=0.441 Sum_probs=103.2
Q ss_pred cccccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHH
Q 040990 20 SSFDGNDRNIGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHI 99 (133)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l 99 (133)
+..+.|+.+..+|-..++ ..|+.++.+|+++|..|+.++|.+|+|.++.+++++|+|||+|||+|+|||+|.|+++
T Consensus 66 e~~~fP~lk~~~~l~~~~----~~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h~lv~~GvY~y~RHPsY~g~fl 141 (201)
T KOG2628|consen 66 EILLFPSLKQNSWLWSRI----GLGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDHKLVTSGVYAYVRHPSYVGFFL 141 (201)
T ss_pred HHHhCcchheeeeeeeec----cCceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCceeEeccchhheeCchHHHHHH
Confidence 346788888888877776 5688889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcCC
Q 040990 100 PSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR 133 (133)
Q Consensus 100 ~~lG~~l~l~n~~~~l~~~~~~~~~f~~RI~~E~ 133 (133)
|++|+|++++||+++++++.+.|.+|.+||+.||
T Consensus 142 w~~gtq~~L~npis~v~f~~V~w~ff~~Ri~~EE 175 (201)
T KOG2628|consen 142 WAAGTQTMLCNPISLVAFLLVVWRFFADRIKEEE 175 (201)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999999999999999999999997
No 2
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.92 E-value=7.9e-26 Score=159.68 Aligned_cols=85 Identities=29% Similarity=0.344 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhH--HHHHHHHHHHHH
Q 040990 46 FFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP--MSTIGPAIVVCH 123 (133)
Q Consensus 46 ~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~--~~~l~~~~~~~~ 123 (133)
+++.+|+.+|.||+.+||++||+.+.+ +++|++||+||||++|||+|+|++++.+|.+.++.|+ .+++..++..+.
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~--~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 80 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVII--QPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFNAWLTALILFALVAWL 80 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--E--ETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEe--cCCCEEecccccccccCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 457789999999999999999999988 7899999999999999999999999999988888887 455555555555
Q ss_pred HHHhhhhcCC
Q 040990 124 SFADMITHGR 133 (133)
Q Consensus 124 ~f~~RI~~E~ 133 (133)
++ .||+.||
T Consensus 81 l~-~RI~~EE 89 (94)
T PF04140_consen 81 LF-VRIREEE 89 (94)
T ss_dssp HH-HHHHHHH
T ss_pred HH-HHHHHHH
Confidence 44 9999997
No 3
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.7e-20 Score=144.13 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHH
Q 040990 35 GRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMST 114 (133)
Q Consensus 35 ~~~~~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~ 114 (133)
..+.....+|+.++.+|..++.++.+.+|++++..++. +++|+|||+|||+++|||+|+|++++.+|++++++|++.+
T Consensus 64 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~l 141 (187)
T COG2020 64 LIPSWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKA--RKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLWAL 141 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCC--CCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455566788889999999999999999997766644 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCC
Q 040990 115 IGPAIVVCHSFADMITHGR 133 (133)
Q Consensus 115 l~~~~~~~~~f~~RI~~E~ 133 (133)
+.+.++.+.++..||+.||
T Consensus 142 ~~~~~~~~~~~~~~i~~EE 160 (187)
T COG2020 142 LIFVVLVALLFLFRIREEE 160 (187)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 9888888888889999998
No 4
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.81 E-value=8.7e-20 Score=127.69 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHHHHHHHH
Q 040990 41 TSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIV 120 (133)
Q Consensus 41 ~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~~~~~ 120 (133)
.++|+.++.+|..++.++...+|++.+.......+++++|||+||||++|||||+|.++..+|.+++.+|++.++..++.
T Consensus 3 ~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~ 82 (106)
T PF04191_consen 3 FVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLA 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 56788999999999999999999998876543224667799999999999999999999999999999999987766655
Q ss_pred HHHHHHhhhhcCC
Q 040990 121 VCHSFADMITHGR 133 (133)
Q Consensus 121 ~~~~f~~RI~~E~ 133 (133)
....+..++..||
T Consensus 83 ~~~~~~~~~~~EE 95 (106)
T PF04191_consen 83 FLLYYIFIIRFEE 95 (106)
T ss_pred HHHHHHHHHHhHH
Confidence 5555556664665
No 5
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.66 E-value=4.1e-16 Score=120.92 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchh-hHHHHHHHHHHhhhHHHHHHHHHHH
Q 040990 43 FTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCG-FHIPSVGTQTMLCNPMSTIGPAIVV 121 (133)
Q Consensus 43 ~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G-~~l~~lG~~l~l~n~~~~l~~~~~~ 121 (133)
+|+.++.+.+.+|.|++..||+.||.++.+ -++|++|++||||++|||+|+- .+.-.+|+.+....+...+++..+.
T Consensus 73 ~gl~~~l~s~~ll~~vi~~LG~iWttki~i--lP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~~p~y 150 (172)
T COG1755 73 IGLALLLFSQILLYWVIKSLGEIWTTKIMI--LPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLFSPIY 150 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeeEEE--eCCceeeccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999999999999999998 7899999999999999999999 6777999999999999888888877
Q ss_pred HHHHHhhhhcCC
Q 040990 122 CHSFADMITHGR 133 (133)
Q Consensus 122 ~~~f~~RI~~E~ 133 (133)
..+.+.||+.||
T Consensus 151 a~~L~vRIr~Ee 162 (172)
T COG1755 151 ALLLYVRIRQEE 162 (172)
T ss_pred HHHHhhhhhHHH
Confidence 888999999997
No 6
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=98.87 E-value=6.4e-09 Score=83.52 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhH
Q 040990 41 TSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111 (133)
Q Consensus 41 ~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~ 111 (133)
-.+|++++.+|..+=+.|=.++- .|. .+++++.+++|+|+|+++|||+|+|..++..|..+...+.
T Consensus 121 ~~~g~~l~~~g~~~E~~AD~Q~~-~fk----~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 121 DILGIALFLIGFLLETVADQQKY-RFK----KDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHh----hCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 35566677777777776666653 332 1224456799999999999999999999999988877654
No 7
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=98.06 E-value=1.5e-05 Score=66.12 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHH
Q 040990 43 FTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPM 112 (133)
Q Consensus 43 ~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~ 112 (133)
+|+.+.+.|...=..+=.+|-.+-. .++.+.++.++|.+|++|||+|+|..+...|.-++-.+.+
T Consensus 152 ~g~~iwivg~~fE~lgD~QL~~Fk~-----~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~ 216 (272)
T COG3752 152 IGLAIWIVGIVFEALGDAQLWVFKK-----DPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEW 216 (272)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHh-----ChhhccccccccceecccCcchHHHHHHHHHHHHHHHhhh
Confidence 4555555555555544445432211 2366788999999999999999999988888777665543
No 8
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=97.91 E-value=3.6e-05 Score=64.15 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhh
Q 040990 41 TSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCN 110 (133)
Q Consensus 41 ~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n 110 (133)
=++|..++..|..+-+.|=.+.-..-+..-... ..+..-.++|.+||+|||+|+|.-++..|+-+.-.+
T Consensus 177 D~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~-~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~ 245 (311)
T KOG4650|consen 177 DVIGWTMWVFGFVIEALADQQKLSFKEARYDLE-NLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAP 245 (311)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHH-HcCCccccccceeeccCccHHHHHHHHHHHHHHHhh
Confidence 356677777788877766655433333332221 123338899999999999999999988887775543
No 9
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=97.86 E-value=7.2e-05 Score=65.48 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=31.0
Q ss_pred cCCCeeeeccccccccCCcchhhHHHHHHHHHHhh
Q 040990 75 EEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109 (133)
Q Consensus 75 ~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~ 109 (133)
+++.+|.++|-|+++|||+|+|.++.++++++..+
T Consensus 346 ~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~g 380 (432)
T PF01222_consen 346 KRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCG 380 (432)
T ss_pred CCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999887654
No 10
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=97.36 E-value=0.00061 Score=53.91 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------cCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHH
Q 040990 40 QTSFTAFFFQVPEYILAIAFHGTG-------WAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPM 112 (133)
Q Consensus 40 ~~~~gl~l~~~G~~lR~~a~~~LG-------~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~ 112 (133)
++-+|+.+|.+|+.+....+..|| +.|-... .+-||.=|+...-||||-|..+..+|++++.+.|.
T Consensus 97 ~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~-------~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~gkpa 169 (208)
T KOG4142|consen 97 AYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILK-------EERVTGFPFNVLDNPMYWGSTLNFLGWALMHGKPA 169 (208)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhh-------hhhcccccccccCCcccccchHHHHHHHHHcCCcc
Confidence 456788888899999998888874 4444222 22588889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCC
Q 040990 113 STIGPAIVVCHSFADMITHGR 133 (133)
Q Consensus 113 ~~l~~~~~~~~~f~~RI~~E~ 133 (133)
.+++.+.+. ..+.--...||
T Consensus 170 GLllt~~V~-f~Y~iAL~~EE 189 (208)
T KOG4142|consen 170 GLLLTVLVA-FTYIIALLYEE 189 (208)
T ss_pred hhHHHHHHH-HHHHHHHHhcC
Confidence 877665443 33444445555
No 11
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=97.08 E-value=0.0018 Score=51.09 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=30.8
Q ss_pred ccccccCCcchhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 040990 85 VHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHS 124 (133)
Q Consensus 85 ~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~~~~~~~~~ 124 (133)
+|+++|||++.|..+|+++=.+..++.-+++.+..+..+.
T Consensus 96 i~r~~RHP~l~g~~lWA~aHLl~nGd~~~~lLFg~~~~~a 135 (191)
T PF07298_consen 96 IYRITRHPMLLGVLLWALAHLLANGDLASLLLFGGFLAWA 135 (191)
T ss_pred HHHHhcCchHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHH
Confidence 9999999999999999988777777766666555444333
No 12
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=97.00 E-value=0.0065 Score=45.69 Aligned_cols=71 Identities=10% Similarity=-0.035 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHH
Q 040990 39 YQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMST 114 (133)
Q Consensus 39 ~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~ 114 (133)
....+|+.+|.+|...=..+=..|.+. +.+.+++.++-+.|.|+++..|.|++.++..+|.+++.+++.+.
T Consensus 40 ~~~~~g~~lf~~g~~~n~~~h~~L~~l-----r~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~~~~~ 110 (150)
T PF02544_consen 40 PRFIIGLALFLIGSIGNFYSHLILANL-----RKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGSWPSY 110 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhhhhhH
Confidence 345668888888888777666666522 11224566788899999999999999999999999998875443
No 13
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=96.85 E-value=0.002 Score=56.78 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=33.1
Q ss_pred cCCCeeeeccccccccCCcchhhHHHHHHHHHHhh--hHHH
Q 040990 75 EEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC--NPMS 113 (133)
Q Consensus 75 ~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~--n~~~ 113 (133)
.++.+|.++|-|+++|||+|+|.++.++++++-.+ +++.
T Consensus 342 ~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf~s~lp 382 (428)
T KOG1435|consen 342 STGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGFNSPLP 382 (428)
T ss_pred ccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccCCCCcc
Confidence 45789999999999999999999999999888654 5544
No 14
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=96.85 E-value=0.0072 Score=47.04 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhh
Q 040990 42 SFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109 (133)
Q Consensus 42 ~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~ 109 (133)
+.+..++.+|+++-...+..||.-=|..=..-..-- ..||.=|+.+.+||||-|..+..+|.+++..
T Consensus 67 l~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm-~~VT~FPFnv~~nPmY~GStl~fLg~al~~p 133 (164)
T PLN02797 67 LYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNI-PWVTEFPFGVIRDPQYVGSILSLLACLSWVP 133 (164)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccc-cccccCCCCCCCCcchhhHHHHHHHHHHHhh
Confidence 346677889999999999999643222111100011 2799999999999999999999999999883
No 15
>PLN02392 probable steroid reductase DET2
Probab=96.10 E-value=0.048 Score=45.26 Aligned_cols=69 Identities=13% Similarity=-0.056 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHH
Q 040990 40 QTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMST 114 (133)
Q Consensus 40 ~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~ 114 (133)
.+.+|+.+|.+|..+=..+=..|.+ .. .+ .+++++=+.|.|+++..|+|+|.++.++|.+++..++.++
T Consensus 151 ~~~iG~~lF~~g~~~N~~sh~~L~~-LR----k~-g~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s~~~~ 219 (260)
T PLN02392 151 RFFGGLVVFLWGMRINVWSDRVLVG-LK----RE-GGGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWSWAGF 219 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cc----cC-CCeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877666555422 11 11 2345677789999999999999999999999988766543
No 16
>PLN02560 enoyl-CoA reductase
Probab=94.24 E-value=0.29 Score=41.30 Aligned_cols=71 Identities=7% Similarity=-0.104 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccceeeec-ccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHHH
Q 040990 40 QTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVS-REEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTI 115 (133)
Q Consensus 40 ~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~-~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l 115 (133)
.+.+|+++|.+|+..=..+=..|. +.. .. ...++++=..|.+++|--|+|++.++.++|.+++.+++.+++
T Consensus 193 ~~~~g~~lf~~~~~~N~~~h~~L~-~LR----~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~~~~~~ 264 (308)
T PLN02560 193 QMKVGFGFGLVCQLANFYCHIILR-NLR----KPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQTVAGYL 264 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcC----CCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHccHHHHH
Confidence 456788888888877644433331 111 11 122344556688999999999999999999999998766543
No 17
>COG4094 Predicted membrane protein [Function unknown]
Probab=92.46 E-value=0.14 Score=41.50 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=40.2
Q ss_pred eeeeccccccccCCcchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcC
Q 040990 79 ELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHG 132 (133)
Q Consensus 79 ~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~~~~~~~~~f~~RI~~E 132 (133)
.+--+|+=+.+|||.-.|..+|++|=.+..+.--+++.+.-++.+....++.-|
T Consensus 97 ~~~~g~Ii~itRHP~l~g~~iWalaHll~nGd~~Svllfggf~l~~~~~~~~~~ 150 (219)
T COG4094 97 HLYEGRIIRITRHPQLLGVVIWALAHLLANGDTFSVLLFGGFLLWAVVGVWSGD 150 (219)
T ss_pred cccCCceEEEecCchhHHHHHHHHHHhhccCceeeHHHHHHHHHHHHHHhhhhh
Confidence 355677889999999999999999999999887776666655544444444433
No 18
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=90.34 E-value=0.82 Score=38.09 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHH
Q 040990 40 QTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMST 114 (133)
Q Consensus 40 ~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~ 114 (133)
.+++|..+++.|.++=...=..| .+++.+...+=+.=+.|.|.|+-=|+|+|.++-++|.++...|+-++
T Consensus 148 r~liG~~lfv~Gm~iN~~sD~iL-----~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws~p~~ 217 (257)
T KOG1638|consen 148 RFLIGVVLFVTGMLINIYSDNIL-----RTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWSLPAL 217 (257)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHH-----HHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhhHHHH
Confidence 56778878877766544321111 11111112223455789999999999999999999999988876553
No 19
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=86.06 E-value=3.8 Score=35.26 Aligned_cols=65 Identities=11% Similarity=-0.094 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhh
Q 040990 42 SFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109 (133)
Q Consensus 42 ~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~ 109 (133)
.+|+.+|.+|...=..+=..|.+ .... ..+.+++++=+.|.++++--|+|++.++.++|.+++.+
T Consensus 212 ~iGl~lFlig~~~n~~~H~iLa~-LR~~--k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~ 276 (323)
T PLN03164 212 WIGAAIFLWGWIHQYRCHAILGS-LREH--KKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASG 276 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCcC--CCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHc
Confidence 56777888887765544333321 1100 11233566777899999999999999999999999875
No 20
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=73.38 E-value=38 Score=25.77 Aligned_cols=79 Identities=13% Similarity=0.007 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeee-cccccc----ccCCcchhhHHHHHHHHHHhhhH
Q 040990 37 QLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELIT-HGVHRF----ASHPSYCGFHIPSVGTQTMLCNP 111 (133)
Q Consensus 37 ~~~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT-~G~Yr~----vRHP~Y~G~~l~~lG~~l~l~n~ 111 (133)
...+.+.+..-+.+|.+++..+-+. ..+++++++.+..+ .|.|.+ +--|..++.....+++++..+.|
T Consensus 38 t~aL~ls~~l~~mig~yl~~~~rr~-------~~rPED~~daEI~dgAGe~GfFsP~SwWPl~la~~~al~~lGla~g~W 110 (137)
T PF12270_consen 38 TVALVLSGGLALMIGFYLRFTARRI-------GPRPEDREDAEIADGAGELGFFSPHSWWPLVLAAAAALVFLGLAFGWW 110 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-------CCCCccccccccccCCCCcCcCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555888888854332 34444445554444 566663 44677777777777777778877
Q ss_pred HHHHHHHHHHH
Q 040990 112 MSTIGPAIVVC 122 (133)
Q Consensus 112 ~~~l~~~~~~~ 122 (133)
+..+...++++
T Consensus 111 l~~iG~~~~i~ 121 (137)
T PF12270_consen 111 LILIGAVLLIV 121 (137)
T ss_pred HHHHHHHHHHH
Confidence 76665554443
No 21
>PHA00739 V3 structural protein VP3
Probab=57.19 E-value=4.1 Score=28.93 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=22.8
Q ss_pred ccccCCcchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcCC
Q 040990 87 RFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR 133 (133)
Q Consensus 87 r~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~~~~~~~~~f~~RI~~E~ 133 (133)
+++-||.|.|-- +..+...-|+.-++..++.-.+..+||.+||
T Consensus 50 sfv~np~Yvgss----nat~~sLVPlFYllVlIiVPAvv~Ykiyk~e 92 (92)
T PHA00739 50 SFVSNPQYVGSS----NATLVSLVPLFYLLVLIIVPAVVAYKIYKEE 92 (92)
T ss_pred ccccCcceecCC----CCchHhHHHHHHHHHHHHhhhheeEEeeecC
Confidence 478999999852 1112222222222233333344567888887
No 22
>PF06281 DUF1035: Protein of unknown function (DUF1035); InterPro: IPR009379 Sulfolobus virus-like particle SSV1 and its fusellovirus homologues can be found in many acidic (pH less than 4.0) hot springs (greater than 70 degrees C) around the world. SSV1 contains a 15.5-kb double-stranded DNA genome that encodes 34 proteins with greater than 50 amino acids []. A site-specific integrase and a DnaA-like protein have been previously identified by sequence homology, and three structural proteins have been isolated from purified virus and identified by N-terminal sequencing (VP1, VP2, and VP3).; GO: 0005198 structural molecule activity, 0016021 integral to membrane
Probab=56.48 E-value=4.7 Score=27.54 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=21.4
Q ss_pred ccccCCcchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcCC
Q 040990 87 RFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR 133 (133)
Q Consensus 87 r~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~~~~~~~~~f~~RI~~E~ 133 (133)
.++-||.|.|-- +..+...-++-.++..++.-.+..+||.+||
T Consensus 31 sfv~nP~yvGSs----nA~iv~LVplFylLvlIiVPAvi~Yk~yk~e 73 (73)
T PF06281_consen 31 SFVSNPQYVGSS----NATIVSLVPLFYLLVLIIVPAVIAYKIYKSE 73 (73)
T ss_pred cccCCcceecCC----CccHHHHHHHHHHHHHHHhhhheeeeeeecC
Confidence 577899999851 1111111222222222333344567777776
No 23
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=52.71 E-value=34 Score=29.34 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=32.2
Q ss_pred cCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHH
Q 040990 75 EEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPM 112 (133)
Q Consensus 75 ~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~ 112 (133)
..++.+-+.|.++++--|.|++.+...+|++....++.
T Consensus 225 ~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~~~ 262 (304)
T KOG1640|consen 225 AKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPDLT 262 (304)
T ss_pred hhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCchH
Confidence 45677889999999999999999999999777766643
No 24
>PRK07758 hypothetical protein; Provisional
Probab=52.39 E-value=7.5 Score=27.97 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=18.6
Q ss_pred ccccccCCCCCCcccccccccc
Q 040990 3 SFRCRRCPSLDDREKTESSFDG 24 (133)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (133)
|-.|.-||++|.+-.+++.|..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~ 40 (95)
T PRK07758 19 SSDCPTCPTCEKERKPKEGFLS 40 (95)
T ss_pred cCCCCCCcccccccCCCCCCCc
Confidence 3469999999999999998853
No 25
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=43.23 E-value=1.2e+02 Score=25.43 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=47.2
Q ss_pred CCcccccchhHHHHHHHHHHHH---HHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHH
Q 040990 26 DRNIGLHTAGRQLYQTSFTAFF---FQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSV 102 (133)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~gl~l---~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~l 102 (133)
|-.+|-|+.+.....-++|.++ ++-..+-|+-|+..+|-.+-..+.+.+ -.+-.+.+--|-.+++++++.+
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLikwilIv~------~sd~f~~y~n~q~wLwwi~~vl 232 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIKWILIVR------FSDDFESYFNGQYWLWWIFLVL 232 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhheeeEEee------cccccccccccchHHHHHHHHH
Confidence 4455666666555554444333 222344566666666655544444432 1244567777777788888888
Q ss_pred HHHHHhhhHHH
Q 040990 103 GTQTMLCNPMS 113 (133)
Q Consensus 103 G~~l~l~n~~~ 113 (133)
|+.|.+...+.
T Consensus 233 G~ll~lr~~i~ 243 (262)
T KOG4812|consen 233 GLLLFLRGFIN 243 (262)
T ss_pred HHHHHHHHHHh
Confidence 88777665443
No 26
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=42.53 E-value=50 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=28.6
Q ss_pred eecc-ccccccCCcchhhHHHHHHHHHHhhhHHHHH
Q 040990 81 ITHG-VHRFASHPSYCGFHIPSVGTQTMLCNPMSTI 115 (133)
Q Consensus 81 VT~G-~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l 115 (133)
+-+| ++.++--|+|+-.+..++|.+++...+.+.+
T Consensus 224 ~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~l~a~l 259 (297)
T KOG1639|consen 224 LPDGFLFNLVSCPNYTYEVGSWIGFAIMTQCLAAYL 259 (297)
T ss_pred cCCccEEEEEecCCcceehHHHHHHHHHHHHHHHHH
Confidence 3456 8999999999999999999999888755443
No 27
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=39.53 E-value=1.8e+02 Score=23.19 Aligned_cols=88 Identities=7% Similarity=-0.085 Sum_probs=48.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCccceeeecccCCCeeeecc-ccccccCCcchhhHHHHHHHHHH
Q 040990 30 GLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTG-WAFTYLIKVSREEHHELITHG-VHRFASHPSYCGFHIPSVGTQTM 107 (133)
Q Consensus 30 ~~~~~~~~~~~~~~gl~l~~~G~~lR~~a~~~LG-~~Ft~~v~~~~~~~h~LVT~G-~Yr~vRHP~Y~G~~l~~lG~~l~ 107 (133)
|.+|..+-..++.++++....| +-+.-+..++ ..++-.=..- ...+-|-+.| +=+|+-|=+|...+...+. .+.
T Consensus 44 f~~s~~T~~~wi~lv~s~l~~g--~~y~~m~~mAkpkydd~G~Ll-d~G~Dln~~g~~~sy~~D~iylt~~v~lls-iis 119 (180)
T KOG3269|consen 44 FFYSSVTKTSWIGLVFSSLVYG--FAYYFMHSMAKPKYDDDGALL-DGGFDLNDEGAICSYVKDAIYLTCFVQLLS-IIS 119 (180)
T ss_pred HHHhcchHHHHHHHHHHHHHHH--HHHHHHHHhccCCcCCCCcee-ecCcCCCCCccHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4455666666666555444333 3333444443 3333111110 2345577777 7889999999987766443 344
Q ss_pred hhhHHHHHHHHHHH
Q 040990 108 LCNPMSTIGPAIVV 121 (133)
Q Consensus 108 l~n~~~~l~~~~~~ 121 (133)
...|+++++..+..
T Consensus 120 ~kfw~~lLl~P~~a 133 (180)
T KOG3269|consen 120 GKFWASLLLIPIFA 133 (180)
T ss_pred HHHHHHHHHhhHHH
Confidence 66666666555443
No 28
>COG4311 SoxD Sarcosine oxidase delta subunit [Amino acid transport and metabolism]
Probab=34.86 E-value=19 Score=25.98 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.0
Q ss_pred CcccccccCCCCCCccccccc
Q 040990 1 MLSFRCRRCPSLDDREKTESS 21 (133)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (133)
|+-.+|.+|...+.+|-|+.-
T Consensus 1 mlLI~CP~Cg~R~e~EFt~~G 21 (97)
T COG4311 1 MLLIPCPYCGERPEEEFTYAG 21 (97)
T ss_pred CceecCCCCCCCchhheeecc
Confidence 778899999986666666543
No 29
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=33.46 E-value=39 Score=23.14 Aligned_cols=57 Identities=18% Similarity=0.036 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHH
Q 040990 43 FTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSV 102 (133)
Q Consensus 43 ~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~l 102 (133)
+++.++.+|..+..---..|=..|+.. +++|+.+.-..+..|.++.-++.--+.+.+
T Consensus 3 ~~~if~ilg~li~~~k~~~LIaGyntm---s~eEk~~~D~~~l~r~~g~~~~~~~i~~li 59 (97)
T PF12650_consen 3 IALIFFILGILILKGKGYFLIAGYNTM---SKEEKEKYDKKKLCRFMGKFMLIIGIILLI 59 (97)
T ss_pred HHHHHHHHHHHHHhcCcccchhhcccC---CHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677775552222222333321 234455566788888888887754443333
No 30
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=32.78 E-value=22 Score=20.73 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.7
Q ss_pred ccccccCCCCCC
Q 040990 3 SFRCRRCPSLDD 14 (133)
Q Consensus 3 ~~~~~~~~~~~~ 14 (133)
.++|++|.+-.|
T Consensus 8 ~Y~C~~C~~~GH 19 (32)
T PF13696_consen 8 GYVCHRCGQKGH 19 (32)
T ss_pred CCEeecCCCCCc
Confidence 589999998665
No 31
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=31.50 E-value=70 Score=21.93 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=11.8
Q ss_pred cccCCcchhhHHHHHHHHHHh
Q 040990 88 FASHPSYCGFHIPSVGTQTML 108 (133)
Q Consensus 88 ~vRHP~Y~G~~l~~lG~~l~l 108 (133)
..|||.|+.... .+|+.+.-
T Consensus 36 ilrNp~~al~a~-~l~w~lg~ 55 (75)
T PF01004_consen 36 ILRNPGYALAAV-ALAWMLGS 55 (75)
T ss_pred HhcCchHHHHHH-HHHHHHcC
Confidence 368999986532 34444433
No 32
>PHA02513 V1 structural protein V1; Reviewed
Probab=31.06 E-value=53 Score=24.71 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=9.1
Q ss_pred eeccccccccCCcchhh
Q 040990 81 ITHGVHRFASHPSYCGF 97 (133)
Q Consensus 81 VT~G~Yr~vRHP~Y~G~ 97 (133)
+|+|- +|.|+|-
T Consensus 94 lTSGT-----nP~y~Gs 105 (135)
T PHA02513 94 LTSGT-----APSVTGT 105 (135)
T ss_pred ccCCC-----CccccCC
Confidence 44665 9999986
No 33
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=29.33 E-value=27 Score=20.97 Aligned_cols=11 Identities=36% Similarity=1.102 Sum_probs=8.6
Q ss_pred CcccccccCCC
Q 040990 1 MLSFRCRRCPS 11 (133)
Q Consensus 1 ~~~~~~~~~~~ 11 (133)
|.+|+|..|..
T Consensus 1 ~~~y~C~~CG~ 11 (46)
T PRK00398 1 MAEYKCARCGR 11 (46)
T ss_pred CCEEECCCCCC
Confidence 67788888876
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=28.77 E-value=25 Score=16.99 Aligned_cols=8 Identities=38% Similarity=1.111 Sum_probs=4.8
Q ss_pred cccccCCC
Q 040990 4 FRCRRCPS 11 (133)
Q Consensus 4 ~~~~~~~~ 11 (133)
|.|..|+.
T Consensus 1 ~~C~~C~~ 8 (24)
T PF13894_consen 1 FQCPICGK 8 (24)
T ss_dssp EE-SSTS-
T ss_pred CCCcCCCC
Confidence 67888876
No 35
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=26.72 E-value=13 Score=24.79 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=14.4
Q ss_pred cccccCCCCCCccccccc
Q 040990 4 FRCRRCPSLDDREKTESS 21 (133)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (133)
++|.+|..+=.++|.|+.
T Consensus 18 lrCPRC~~~FR~~K~Y~R 35 (65)
T COG4049 18 LRCPRCGMVFRRRKDYIR 35 (65)
T ss_pred eeCCchhHHHHHhHHHHH
Confidence 789999887777777764
No 36
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=24.77 E-value=33 Score=17.43 Aligned_cols=8 Identities=25% Similarity=1.207 Sum_probs=4.6
Q ss_pred cccccCCC
Q 040990 4 FRCRRCPS 11 (133)
Q Consensus 4 ~~~~~~~~ 11 (133)
|+|+.|+-
T Consensus 1 y~C~~C~y 8 (24)
T PF13909_consen 1 YKCPHCSY 8 (24)
T ss_dssp EE-SSSS-
T ss_pred CCCCCCCC
Confidence 67888864
No 37
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=24.63 E-value=29 Score=30.18 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=10.7
Q ss_pred cccccCCCCCCcc
Q 040990 4 FRCRRCPSLDDRE 16 (133)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (133)
+.|.||+++|.+.
T Consensus 20 L~C~YC~~~~~~~ 32 (378)
T COG0641 20 LDCKYCFYLEKES 32 (378)
T ss_pred CCCCeeCcccCCC
Confidence 6899999976665
No 38
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.04 E-value=1.4e+02 Score=22.18 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 040990 112 MSTIGPAIVVCHSFADMITH 131 (133)
Q Consensus 112 ~~~l~~~~~~~~~f~~RI~~ 131 (133)
.++++.+++++++.++|++.
T Consensus 75 aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33344444555556666654
No 39
>PF15345 TMEM51: Transmembrane protein 51
Probab=23.45 E-value=90 Score=25.85 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccC-CCeeeeccccccccCCcchhhHHHHHHHHHHhhh
Q 040990 36 RQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREE-HHELITHGVHRFASHPSYCGFHIPSVGTQTMLCN 110 (133)
Q Consensus 36 ~~~~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~-~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n 110 (133)
.|-.+-.+|++++++|.++-.| ++-..|++.-...... +...-++| ....-..=.+++|...|.+|++.+
T Consensus 5 shYAL~AiG~Gml~LGiiM~vW---~~VPg~~~~~~~~~~~~n~~~~~~~--~~ksKt~SVAyVLVG~Gv~LLLLS 75 (233)
T PF15345_consen 5 SHYALTAIGVGMLALGIIMIVW---NLVPGFSSGNKPTPQGSNSTEPSDG--NLKSKTFSVAYVLVGSGVALLLLS 75 (233)
T ss_pred hhHHHHHHhHhHHHHhhHheee---eecccccCCCCCCCCCCCCcCCCCC--cccceeEEEEEehhhHHHHHHHHH
Confidence 3445667788889899887665 5555666544432222 11123334 222233345677777777665544
No 40
>PF07508 Recombinase: Recombinase; InterPro: IPR011109 This domain is usually found associated with IPR006119 from INTERPRO in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.
Probab=22.27 E-value=19 Score=24.10 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=17.3
Q ss_pred CeeeeccccccccCCcchhhHH
Q 040990 78 HELITHGVHRFASHPSYCGFHI 99 (133)
Q Consensus 78 h~LVT~G~Yr~vRHP~Y~G~~l 99 (133)
...-.+.+.++.|||.|.|...
T Consensus 38 ~~W~~~~v~~iL~np~y~G~~~ 59 (102)
T PF07508_consen 38 KKWSKSTVRRILRNPAYAGYRV 59 (102)
T ss_pred CcccHHHHHHHHhhhhccceEE
Confidence 3356678899999999998653
No 41
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=22.24 E-value=65 Score=15.99 Aligned_cols=13 Identities=15% Similarity=0.511 Sum_probs=10.5
Q ss_pred ccccCCCCCCccc
Q 040990 5 RCRRCPSLDDREK 17 (133)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (133)
+|..|.+.+|...
T Consensus 2 ~C~~C~~~GH~~~ 14 (18)
T PF00098_consen 2 KCFNCGEPGHIAR 14 (18)
T ss_dssp BCTTTSCSSSCGC
T ss_pred cCcCCCCcCcccc
Confidence 6899999888654
No 42
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=20.52 E-value=46 Score=20.51 Aligned_cols=9 Identities=44% Similarity=1.028 Sum_probs=7.9
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
+|+|.+|..
T Consensus 2 ~f~CP~C~~ 10 (54)
T PF05605_consen 2 SFTCPYCGK 10 (54)
T ss_pred CcCCCCCCC
Confidence 689999987
Done!