Query 040990
Match_columns 133
No_of_seqs 183 out of 866
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 03:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.8 1.9E-20 6.3E-25 145.4 8.0 95 37-133 74-168 (194)
2 1p58_D Envelope protein M; fla 50.8 13 0.00044 24.5 3.0 19 88-107 36-54 (75)
3 3j27_B Matrix protein, small e 36.9 20 0.0007 23.5 2.2 16 88-104 36-51 (75)
4 2c9l_Y EB1, zebra, BZLF1 trans 35.5 7.5 0.00026 24.7 -0.1 14 8-21 48-61 (63)
5 2jp3_A FXYD domain-containing 32.5 18 0.0006 23.6 1.3 50 32-84 14-63 (67)
6 2oxg_Z SOXZ protein; immunoglo 26.6 13 0.00046 25.7 -0.1 10 88-97 25-34 (108)
7 1v8h_A Sulfur oxidation protei 25.7 14 0.00049 25.4 -0.1 10 88-97 24-33 (107)
8 1ard_A Yeast transcription fac 25.3 23 0.0008 16.2 0.8 9 3-11 2-10 (29)
9 2kvh_A Zinc finger and BTB dom 22.9 27 0.00093 16.0 0.7 9 3-11 3-11 (27)
10 1znf_A 31ST zinc finger from X 22.2 29 0.001 15.6 0.8 9 3-11 1-9 (27)
11 1paa_A Yeast transcription fac 21.3 31 0.0011 15.9 0.8 9 3-11 2-10 (30)
12 2m0d_A Zinc finger and BTB dom 20.3 31 0.0011 15.7 0.6 9 3-11 3-11 (30)
13 1p7a_A BF3, BKLF, kruppel-like 20.2 33 0.0011 16.9 0.8 9 3-11 11-19 (37)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.82 E-value=1.9e-20 Score=145.40 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHHHH
Q 040990 37 QLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIG 116 (133)
Q Consensus 37 ~~~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~ 116 (133)
+..+..+|++++.+|..++.+|..++|++|++.+.+ +++|+|||+|+|+++|||||+|.+++.+|+++..+|+++++.
T Consensus 74 p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~--~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~ 151 (194)
T 4a2n_B 74 PDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEI--KDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIF 151 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCE--ETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC--CCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHH
Confidence 345667899999999999999999999999988766 678999999999999999999999999999999999988764
Q ss_pred HHHHHHHHHHhhhhcCC
Q 040990 117 PAIVVCHSFADMITHGR 133 (133)
Q Consensus 117 ~~~~~~~~f~~RI~~E~ 133 (133)
..+.....+..||+.||
T Consensus 152 ~~~~~~~~~~~ri~~EE 168 (194)
T 4a2n_B 152 GIVAWAILYFIRVPKEE 168 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334568898886
No 2
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=50.79 E-value=13 Score=24.53 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=14.0
Q ss_pred cccCCcchhhHHHHHHHHHH
Q 040990 88 FASHPSYCGFHIPSVGTQTM 107 (133)
Q Consensus 88 ~vRHP~Y~G~~l~~lG~~l~ 107 (133)
..|||.|+..+. .+|+.+.
T Consensus 36 ilrNp~~al~a~-~~~w~lG 54 (75)
T 1p58_D 36 ILRHPGFTIMAA-ILAYTIG 54 (75)
T ss_pred HHHChHHHHHHH-HHHHHHc
Confidence 368999998776 6777444
No 3
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=36.90 E-value=20 Score=23.53 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=12.1
Q ss_pred cccCCcchhhHHHHHHH
Q 040990 88 FASHPSYCGFHIPSVGT 104 (133)
Q Consensus 88 ~vRHP~Y~G~~l~~lG~ 104 (133)
..|||.|+..+.. +|+
T Consensus 36 ilrNp~~al~~~~-~~w 51 (75)
T 3j27_B 36 ILRHPGFTIMAAI-LAY 51 (75)
T ss_dssp HHHCCTHHHHHHH-HHH
T ss_pred HHHChHHHHHHHH-HHH
Confidence 3689999977665 666
No 4
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=35.51 E-value=7.5 Score=24.68 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.6
Q ss_pred cCCCCCCccccccc
Q 040990 8 RCPSLDDREKTESS 21 (133)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (133)
-||+||-+||-.+|
T Consensus 48 mcpsldvdsiip~t 61 (63)
T 2c9l_Y 48 MCPSLDVDSIIPRT 61 (63)
T ss_dssp HCTTCCHHHHSCCC
T ss_pred hCCcccccccCCCC
Confidence 59999999987664
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=32.49 E-value=18 Score=23.60 Aligned_cols=50 Identities=14% Similarity=-0.091 Sum_probs=26.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeecc
Q 040990 32 HTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHG 84 (133)
Q Consensus 32 ~~~~~~~~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G 84 (133)
|-..+.-+ .+++.++|++|..+-...-..++.+=.+.- ...+.+.|+|.|
T Consensus 14 Y~tLRigG-LifA~vLfi~GI~iilS~kcrCk~~qk~~~--~~~~a~~litpg 63 (67)
T 2jp3_A 14 WESLQLGG-LIFGGLLCIAGIALALSGKCKCRRNHTPSS--LPEKVTPLITPG 63 (67)
T ss_dssp GHHHHHHH-HHHHHHHHHHHHHHHHTTHHHHHHTCCTTT--STTTSHHHHSCC
T ss_pred hHHheecc-hhhHHHHHHHHHHHHHcCcccccCCCCCCC--CCccCCceecCC
Confidence 33344434 444556777888877755444433323222 224555688866
No 6
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=26.64 E-value=13 Score=25.65 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=8.6
Q ss_pred cccCCcchhh
Q 040990 88 FASHPSYCGF 97 (133)
Q Consensus 88 ~vRHP~Y~G~ 97 (133)
.++|||.+|+
T Consensus 25 ~I~HPMetGl 34 (108)
T 2oxg_Z 25 LISHKMESGQ 34 (108)
T ss_dssp EECCCCBCSC
T ss_pred EeECCCcccc
Confidence 5899999984
No 7
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=25.65 E-value=14 Score=25.42 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=8.6
Q ss_pred cccCCcchhh
Q 040990 88 FASHPSYCGF 97 (133)
Q Consensus 88 ~vRHP~Y~G~ 97 (133)
.++|||.+|+
T Consensus 24 ~I~HPmetGl 33 (107)
T 1v8h_A 24 VAQHPNEPGT 33 (107)
T ss_dssp EECCCCBCSC
T ss_pred EeECCCCccc
Confidence 5899999984
No 8
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.31 E-value=23 Score=16.19 Aligned_cols=9 Identities=44% Similarity=1.054 Sum_probs=7.2
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
+|.|..|..
T Consensus 2 ~~~C~~C~~ 10 (29)
T 1ard_A 2 SFVCEVCTR 10 (29)
T ss_dssp CCBCTTTCC
T ss_pred CeECCCCCc
Confidence 588998876
No 9
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.86 E-value=27 Score=15.96 Aligned_cols=9 Identities=44% Similarity=1.316 Sum_probs=7.4
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
+|.|..|..
T Consensus 3 ~~~C~~C~k 11 (27)
T 2kvh_A 3 PFSCSLCPQ 11 (27)
T ss_dssp CEECSSSSC
T ss_pred CccCCCcCh
Confidence 688999976
No 10
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.18 E-value=29 Score=15.62 Aligned_cols=9 Identities=22% Similarity=1.017 Sum_probs=6.3
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
+|.|..|..
T Consensus 1 ~~~C~~C~k 9 (27)
T 1znf_A 1 XYKCGLCER 9 (27)
T ss_dssp -CBCSSSCC
T ss_pred CccCCCCCC
Confidence 478888875
No 11
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.30 E-value=31 Score=15.92 Aligned_cols=9 Identities=22% Similarity=0.899 Sum_probs=7.1
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
+|.|..|..
T Consensus 2 ~~~C~~C~k 10 (30)
T 1paa_A 2 AYACGLCNR 10 (30)
T ss_dssp CSBCTTTCC
T ss_pred CcCCcccCc
Confidence 588988875
No 12
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.25 E-value=31 Score=15.69 Aligned_cols=9 Identities=22% Similarity=0.966 Sum_probs=7.2
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
+|.|..|..
T Consensus 3 ~~~C~~C~~ 11 (30)
T 2m0d_A 3 PYQCDYCGR 11 (30)
T ss_dssp CEECTTTCC
T ss_pred CccCCCCCc
Confidence 588988876
No 13
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.21 E-value=33 Score=16.95 Aligned_cols=9 Identities=33% Similarity=1.102 Sum_probs=7.5
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
+|+|..|..
T Consensus 11 ~~~C~~C~k 19 (37)
T 1p7a_A 11 PFQCPDCDR 19 (37)
T ss_dssp SBCCTTTCC
T ss_pred CccCCCCCc
Confidence 689999976
Done!