Query 040990
Match_columns 133
No_of_seqs 183 out of 866
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 03:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040990.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040990hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x5wa2 g.37.1.1 (A:36-64) Zin 36.5 4.5 0.00033 20.9 0.5 9 3-11 2-10 (29)
2 d2ghfa2 g.37.1.1 (A:9-44) Zinc 26.7 8.4 0.00061 20.7 0.5 9 3-11 10-18 (36)
3 d1v8ha1 b.1.18.19 (A:2-107) Su 26.3 6.4 0.00047 25.6 -0.1 11 87-97 23-33 (106)
4 d1vd4a_ g.41.3.1 (A:) Transcri 23.1 8.2 0.0006 23.1 0.0 15 3-23 14-28 (62)
5 d2ct1a2 g.37.1.1 (A:8-43) Tran 22.6 12 0.00087 19.6 0.6 10 2-11 7-16 (36)
6 d2adra1 g.37.1.1 (A:102-130) A 19.2 17 0.0012 18.2 0.7 9 3-11 2-10 (29)
7 d2dmda2 g.37.1.1 (A:8-33) Zinc 18.9 7.7 0.00056 19.4 -0.7 13 5-17 6-18 (26)
8 d1srka_ g.37.1.1 (A:) Zinc fin 18.4 17 0.0012 19.0 0.7 10 2-11 6-15 (35)
9 d1vk6a4 g.41.14.1 (A:97-125) N 17.6 14 0.001 18.9 0.2 16 6-21 2-17 (29)
10 d1s7ia_ d.58.4.9 (A:) Hypothet 16.5 35 0.0026 22.0 2.1 13 75-87 66-78 (124)
No 1
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.52 E-value=4.5 Score=20.91 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=7.4
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
+|+|.+|.-
T Consensus 2 PFkC~~CsF 10 (29)
T d1x5wa2 2 PFKCNYCSF 10 (29)
T ss_dssp SEECSSSSC
T ss_pred Ccccceecc
Confidence 699999954
No 2
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.72 E-value=8.4 Score=20.68 Aligned_cols=9 Identities=22% Similarity=1.003 Sum_probs=6.9
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
-|.|.||+-
T Consensus 10 GyECKYC~f 18 (36)
T d2ghfa2 10 GYECKYCTF 18 (36)
T ss_dssp SEECSSCSC
T ss_pred CeeeeecCc
Confidence 378999974
No 3
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=26.29 E-value=6.4 Score=25.63 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=9.2
Q ss_pred ccccCCcchhh
Q 040990 87 RFASHPSYCGF 97 (133)
Q Consensus 87 r~vRHP~Y~G~ 97 (133)
..++|||.+|+
T Consensus 23 ~li~HPMeTG~ 33 (106)
T d1v8ha1 23 VVAQHPNEPGT 33 (106)
T ss_dssp EEECCCCBCSC
T ss_pred EEEECCCcccc
Confidence 47899999985
No 4
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.13 E-value=8.2 Score=23.09 Aligned_cols=15 Identities=40% Similarity=0.886 Sum_probs=9.7
Q ss_pred ccccccCCCCCCccccccccc
Q 040990 3 SFRCRRCPSLDDREKTESSFD 23 (133)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (133)
+|+|..|.+ +||+.+
T Consensus 14 ~y~Cp~C~~------~ys~Ld 28 (62)
T d1vd4a_ 14 SFKCPVCSS------TFTDLE 28 (62)
T ss_dssp EEECSSSCC------EEEHHH
T ss_pred ceECCCCCC------Ccchhh
Confidence 577777765 555544
No 5
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.63 E-value=12 Score=19.61 Aligned_cols=10 Identities=20% Similarity=0.753 Sum_probs=8.2
Q ss_pred cccccccCCC
Q 040990 2 LSFRCRRCPS 11 (133)
Q Consensus 2 ~~~~~~~~~~ 11 (133)
-+|+|..|..
T Consensus 7 kP~~C~~C~k 16 (36)
T d2ct1a2 7 KPYECYICHA 16 (36)
T ss_dssp CSEECTTTCC
T ss_pred CCEeCCCCcc
Confidence 3799999986
No 6
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=19.21 E-value=17 Score=18.15 Aligned_cols=9 Identities=44% Similarity=1.054 Sum_probs=7.5
Q ss_pred ccccccCCC
Q 040990 3 SFRCRRCPS 11 (133)
Q Consensus 3 ~~~~~~~~~ 11 (133)
+|.|+.|..
T Consensus 2 p~~C~~C~k 10 (29)
T d2adra1 2 SFVCEVCTR 10 (29)
T ss_dssp CBCCTTTCC
T ss_pred cCCCCCCCC
Confidence 689999976
No 7
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.91 E-value=7.7 Score=19.40 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=8.9
Q ss_pred ccccCCCCCCccc
Q 040990 5 RCRRCPSLDDREK 17 (133)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (133)
+|+.|||-.|.-+
T Consensus 6 ~c~kcfsrkdklk 18 (26)
T d2dmda2 6 VCGKCFSRKDKLK 18 (26)
T ss_dssp TTTBCCCCHHHHH
T ss_pred hhhhHhcchhHHH
Confidence 6888998655444
No 8
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.44 E-value=17 Score=18.98 Aligned_cols=10 Identities=50% Similarity=0.946 Sum_probs=8.2
Q ss_pred cccccccCCC
Q 040990 2 LSFRCRRCPS 11 (133)
Q Consensus 2 ~~~~~~~~~~ 11 (133)
-+|+|..|..
T Consensus 6 kPy~C~~C~k 15 (35)
T d1srka_ 6 RPFVCRICLS 15 (35)
T ss_dssp SCEECSSSCC
T ss_pred ccccCCCCCC
Confidence 3799999976
No 9
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=17.65 E-value=14 Score=18.89 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.5
Q ss_pred cccCCCCCCccccccc
Q 040990 6 CRRCPSLDDREKTESS 21 (133)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (133)
|-||...-|.|+||..
T Consensus 2 CGYCGh~Mh~s~tEwa 17 (29)
T d1vk6a4 2 CGYCGHEMYPSKTEWA 17 (29)
T ss_dssp CTTTCCBEEECSSSSC
T ss_pred ccccCCccccchhHHH
Confidence 8899998889998853
No 10
>d1s7ia_ d.58.4.9 (A:) Hypothetical protein PA1349 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.46 E-value=35 Score=22.03 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=10.8
Q ss_pred cCCCeeeeccccc
Q 040990 75 EEHHELITHGVHR 87 (133)
Q Consensus 75 ~~~h~LVT~G~Yr 87 (133)
+++...||+|||.
T Consensus 66 ~~g~~~vtDGPf~ 78 (124)
T d1s7ia_ 66 QGGRLAMTDGPFA 78 (124)
T ss_dssp CSSCEEEEESCSS
T ss_pred CCCcceeccCCCc
Confidence 5677899999995
Done!