Query 040993
Match_columns 194
No_of_seqs 27 out of 29
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 03:54:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c07_A Protein (epidermal grow 33.7 21 0.00072 24.0 1.9 30 87-116 60-89 (95)
2 1sy9_B Cyclic-nucleotide-gated 31.0 30 0.001 20.8 2.1 14 90-103 10-23 (26)
3 2dgu_A Heterogeneous nuclear r 26.6 69 0.0024 21.3 3.6 20 83-102 18-37 (103)
4 1eh2_A EPS15; calcium binding, 19.9 90 0.0031 22.0 3.2 29 87-116 64-92 (106)
5 1fje_B Nucleolin RBD12, protei 18.6 1.4E+02 0.0047 21.0 4.0 31 74-104 11-41 (175)
6 3h51_A Putative calcium/calmod 18.1 72 0.0024 22.7 2.4 24 82-105 11-34 (156)
7 2jrs_A RNA-binding protein 39; 17.9 2E+02 0.0069 19.5 4.6 20 82-101 32-51 (108)
8 2e5g_A U6 snRNA-specific termi 17.6 74 0.0025 20.8 2.2 41 82-134 14-54 (94)
9 2f4e_A ATFKBP42; FKBP-like, al 17.6 1.7E+02 0.0059 22.6 4.6 55 106-162 32-89 (180)
10 1fi6_A EH domain protein REPS1 16.7 76 0.0026 21.0 2.1 29 87-116 59-87 (92)
No 1
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=33.67 E-value=21 Score=24.04 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCcCcccce
Q 040993 87 NTDLQRFESLLFQWANSLCQGANLPLPVPL 116 (194)
Q Consensus 87 n~D~arf~~lLfQWAnsL~qganLPLPlPl 116 (194)
.||.+.|+.++..-...+-.|..+|-.||-
T Consensus 60 ~i~~~EF~~~~~~~~~~~~~g~~lP~~lP~ 89 (95)
T 1c07_A 60 KLSKDQFALAFHLISQKLIKGIDPPHVLTP 89 (95)
T ss_dssp SEETTTHHHHHHHHHHHHTSCCCCCSSCCT
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCcCCc
Confidence 478889999988866655578888888874
No 2
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=30.96 E-value=30 Score=20.80 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHh
Q 040993 90 LQRFESLLFQWANS 103 (194)
Q Consensus 90 ~arf~~lLfQWAns 103 (194)
++|+...|++||+.
T Consensus 10 i~rlvgv~r~wa~~ 23 (26)
T 1sy9_B 10 IARLVGVLREWAYR 23 (26)
T ss_pred HHHHHHHHHHHHHh
Confidence 57889999999984
No 3
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=26.58 E-value=69 Score=21.33 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=17.9
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q 040993 83 KLPGNTDLQRFESLLFQWAN 102 (194)
Q Consensus 83 KLP~n~D~arf~~lLfQWAn 102 (194)
.||.+++++.+.+++.+++.
T Consensus 18 nl~~~~t~~~l~~~F~~~G~ 37 (103)
T 2dgu_A 18 NLANTVTEEILEKAFSQFGK 37 (103)
T ss_dssp CCCTTCCHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHhcCC
Confidence 68999999999999998874
No 4
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=19.92 E-value=90 Score=21.99 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCcCcccce
Q 040993 87 NTDLQRFESLLFQWANSLCQGANLPLPVPL 116 (194)
Q Consensus 87 n~D~arf~~lLfQWAnsL~qganLPLPlPl 116 (194)
.+|.+.|+.++..-...+ +|..+|-.||-
T Consensus 64 ~id~~EF~~~m~~~~~~~-~g~~lP~~LP~ 92 (106)
T 1eh2_A 64 MLDRDEFAVAMFLVYCAL-EKEPVPMSLPP 92 (106)
T ss_dssp BCCHHHHHHHHHHHHHHH-HTCCCCSSCCT
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCCCCCCc
Confidence 489999999997754332 68888887774
No 5
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=18.63 E-value=1.4e+02 Score=21.00 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=24.4
Q ss_pred CCCceeeeeccCCCCCHHHHHHHHHHHHHhh
Q 040993 74 EDGVSLGTLKLPGNTDLQRFESLLFQWANSL 104 (194)
Q Consensus 74 ~dgVsLGT~KLP~n~D~arf~~lLfQWAnsL 104 (194)
.+.-.|=--.||.+++++.+.+++.+++...
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~ 41 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKN 41 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcc
Confidence 4444444457999999999999999999764
No 6
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=18.10 E-value=72 Score=22.73 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=20.6
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhc
Q 040993 82 LKLPGNTDLQRFESLLFQWANSLC 105 (194)
Q Consensus 82 ~KLP~n~D~arf~~lLfQWAnsL~ 105 (194)
+.+|++.|++...+++.+|...+.
T Consensus 11 a~~~~~~d~~~I~~~~~~~~~A~~ 34 (156)
T 3h51_A 11 AALPADGEAREVAALFDTWNAALA 34 (156)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999988764
No 7
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=17.90 E-value=2e+02 Score=19.55 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=16.4
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 040993 82 LKLPGNTDLQRFESLLFQWA 101 (194)
Q Consensus 82 ~KLP~n~D~arf~~lLfQWA 101 (194)
-.||.+++++.+.+++.+++
T Consensus 32 ~nLp~~~te~~l~~~F~~~G 51 (108)
T 2jrs_A 32 GSLHFNITEDMLRGIFEPFG 51 (108)
T ss_dssp ECCCSSCCHHHHHHHHTTTS
T ss_pred eCCCCCCCHHHHHHHHHhcC
Confidence 37899999999988876664
No 8
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.58 E-value=74 Score=20.81 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=28.1
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhcccCCcCcccceeeccCCCceEEEEEEeCC
Q 040993 82 LKLPGNTDLQRFESLLFQWANSLCQGANLPLPVPLKVDKIPGGARLGFITVGD 134 (194)
Q Consensus 82 ~KLP~n~D~arf~~lLfQWAnsL~qganLPLPlPlkVDkv~~G~RLaFI~~~D 134 (194)
-.||.+++++.+.+++.+|+.-. + + ..|+-.+. .|||.+.+
T Consensus 14 ~nl~~~~t~~~l~~~F~~~G~v~----~----v--~~~~~~g~--~afV~f~~ 54 (94)
T 2e5g_A 14 SGFPRGVDSAQLSEYFLAFGPVA----S----V--VMDKDKGV--FAIVEMGD 54 (94)
T ss_dssp ECCCTTCCHHHHHHHGGGTSCEE----E----E--EECSSSCC--EEEEEESS
T ss_pred ECCCCCCCHHHHHHHHHhcCCeE----E----E--EEcCCCCc--EEEEEECC
Confidence 36899999999988888776422 1 1 33443333 99999964
No 9
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=17.56 E-value=1.7e+02 Score=22.56 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=34.7
Q ss_pred ccCCcCcccceeeccCCCceEEEEEEeCCCce---eeeEEEEEEeeccCCCCcceeeeee
Q 040993 106 QGANLPLPVPLKVDKIPGGARLGFITVGDGET---KVLVYIDCLVFPATGGSGPIFRAIR 162 (194)
Q Consensus 106 qganLPLPlPlkVDkv~~G~RLaFI~~~DG~~---e~lV~Id~lv~~st~~s~~~F~a~R 162 (194)
+..++|...--.+...++|+..-.++.++|.. ...|+|+..... ..++..|..++
T Consensus 32 ~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G~~~~~Gd~V~v~Y~g~l--~~dG~~fdss~ 89 (180)
T 2f4e_A 32 QEGNVPPKVDSEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWT--KNSQHKFEDTW 89 (180)
T ss_dssp --CCSCCCCCSCCEEEETTEEEEEEECCBSCCBCTTCEEEEEEEEEE--TTTCCEEEETT
T ss_pred CcccCCcccCCCcEECCCceEEEEEeCCCCCCCCCCCEEEEEEEEEE--CCCCcEEeccC
Confidence 45667665544567889999999999887752 235777765432 22456776653
No 10
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=16.72 E-value=76 Score=20.96 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHhhcccCCcCcccce
Q 040993 87 NTDLQRFESLLFQWANSLCQGANLPLPVPL 116 (194)
Q Consensus 87 n~D~arf~~lLfQWAnsL~qganLPLPlPl 116 (194)
.+|.+.|+.++..-... -+|..+|-.||.
T Consensus 59 ~i~~~EF~~~~~~~~~~-~~g~~lp~~lp~ 87 (92)
T 1fi6_A 59 ALTLDEFCAAFHLVVAR-KNGYDLPEKLPE 87 (92)
T ss_dssp EEEHHHHHHHHHHHHHH-HHSCCCCCCSCS
T ss_pred CCCHHHHHHHHHHHHHH-HcCCCCCccCCH
Confidence 37899999998765432 258888888885
Done!