Query 040993
Match_columns 194
No_of_seqs 27 out of 29
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 03:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040993.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040993hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u2fa_ d.58.7.1 (A:) Splicing 38.3 29 0.0021 21.5 5.0 22 83-104 8-29 (90)
2 d2cpea1 d.58.7.1 (A:353-453) R 35.2 32 0.0023 21.5 4.8 30 73-102 5-34 (101)
3 d1ppjb1 d.185.1.1 (B:17-235) C 32.6 16 0.0012 25.9 3.2 16 113-128 5-20 (219)
4 d2cpza1 d.58.7.1 (A:383-484) C 27.0 28 0.002 22.5 3.4 49 78-134 20-69 (102)
5 d1u8sa2 d.58.18.5 (A:88-180) p 26.7 26 0.0019 22.7 3.2 26 80-105 58-83 (93)
6 d1hr6b1 d.185.1.1 (B:24-245) M 23.8 39 0.0029 22.9 3.8 18 116-133 3-20 (222)
7 d1q9ja1 c.43.1.2 (A:1-175) Pol 23.7 23 0.0017 23.9 2.6 24 81-104 27-50 (175)
8 d1ppja1 d.185.1.1 (A:2-233) Cy 23.2 36 0.0026 23.6 3.6 15 116-131 13-27 (232)
9 d1l3ka1 d.58.7.1 (A:8-91) Nucl 21.7 35 0.0025 21.3 3.0 20 82-101 12-31 (84)
10 d3begb1 d.58.7.1 (B:121-207) S 19.5 34 0.0025 21.3 2.5 38 83-134 7-44 (87)
No 1
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.26 E-value=29 Score=21.54 Aligned_cols=22 Identities=5% Similarity=-0.068 Sum_probs=18.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh
Q 040993 83 KLPGNTDLQRFESLLFQWANSL 104 (194)
Q Consensus 83 KLP~n~D~arf~~lLfQWAnsL 104 (194)
.||.+++++.+.+++.+.+.-.
T Consensus 8 NLp~~~te~~l~~~F~~~g~~~ 29 (90)
T d1u2fa_ 8 NIPFGITEEAMMDFFNAQMRLG 29 (90)
T ss_dssp SCCTTCCTTHHHHHHHHHHTTT
T ss_pred CCCCccchHHHHHHHHhhCcEE
Confidence 5899999999999999988543
No 2
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.20 E-value=32 Score=21.50 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=21.7
Q ss_pred CCCCceeeeeccCCCCCHHHHHHHHHHHHH
Q 040993 73 NEDGVSLGTLKLPGNTDLQRFESLLFQWAN 102 (194)
Q Consensus 73 d~dgVsLGT~KLP~n~D~arf~~lLfQWAn 102 (194)
+.+.-.|=---||.+++++.+.+++.++|.
T Consensus 5 ~~~~~~i~V~nLp~~~te~~l~~~F~~~G~ 34 (101)
T d2cpea1 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGV 34 (101)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHHCce
Confidence 334444444578999999999998887763
No 3
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.61 E-value=16 Score=25.92 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=12.3
Q ss_pred ccceeeccCCCceEEE
Q 040993 113 PVPLKVDKIPGGARLG 128 (194)
Q Consensus 113 PlPlkVDkv~~G~RLa 128 (194)
|-.+++-+++||+|+.
T Consensus 5 ~~~~~~~~L~NGl~v~ 20 (219)
T d1ppjb1 5 PQDLEFTRLPNGLVIA 20 (219)
T ss_dssp CCCCEEEECTTSCEEE
T ss_pred CCceeEEECCCCCEEE
Confidence 4446777899999974
No 4
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.99 E-value=28 Score=22.48 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=30.2
Q ss_pred eeeeeccCCCCCHHHHHHHHHHHHHhhcccCCcCcccceeeccCCCceE-EEEEEeCC
Q 040993 78 SLGTLKLPGNTDLQRFESLLFQWANSLCQGANLPLPVPLKVDKIPGGAR-LGFITVGD 134 (194)
Q Consensus 78 sLGT~KLP~n~D~arf~~lLfQWAnsL~qganLPLPlPlkVDkv~~G~R-LaFI~~~D 134 (194)
.|=---||.+++++.+.+++.+++.- .-+.+..|+-.+--| .|||.+.+
T Consensus 20 ~l~V~nLp~~~te~~l~~~F~~~G~i--------~~~~~~~~~~~g~~kG~afV~f~~ 69 (102)
T d2cpza1 20 NLFIYHLPQEFGDQDLLQMFMPFGNV--------VSAKVFIDKQTNLSKCFGFVSYDN 69 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCC--------SEEEEEECSSSCSEEEEEEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhccc--------cccceeeecccCCCccceEEEeCC
Confidence 34445799999999999988887631 112233343333333 68888853
No 5
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=26.70 E-value=26 Score=22.71 Aligned_cols=26 Identities=8% Similarity=0.094 Sum_probs=22.2
Q ss_pred eeeccCCCCCHHHHHHHHHHHHHhhc
Q 040993 80 GTLKLPGNTDLQRFESLLFQWANSLC 105 (194)
Q Consensus 80 GT~KLP~n~D~arf~~lLfQWAnsL~ 105 (194)
-++.+|.++|++.|++.+.+-|..|-
T Consensus 58 ~~~~~p~~~~~~~l~~~l~~l~~~l~ 83 (93)
T d1u8sa2 58 ISARVDSGCNLMQLQEEFDALCTALD 83 (93)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEEcCccccHHHHHHHHHHHHHHce
Confidence 46788999999999999998887764
No 6
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.75 E-value=39 Score=22.91 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=14.1
Q ss_pred eeeccCCCceEEEEEEeC
Q 040993 116 LKVDKIPGGARLGFITVG 133 (194)
Q Consensus 116 lkVDkv~~G~RLaFI~~~ 133 (194)
.|..+++||+|+.++...
T Consensus 3 ~~~~~L~NGl~v~~~~~~ 20 (222)
T d1hr6b1 3 TRTSKLPNGLTIATEYIP 20 (222)
T ss_dssp CEEEECTTSCEEEEEECS
T ss_pred cEEEEcCCCCEEEEEECC
Confidence 377899999999777643
No 7
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.73 E-value=23 Score=23.91 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.3
Q ss_pred eeccCCCCCHHHHHHHHHHHHHhh
Q 040993 81 TLKLPGNTDLQRFESLLFQWANSL 104 (194)
Q Consensus 81 T~KLP~n~D~arf~~lLfQWAnsL 104 (194)
+.+|++.+|.++|+.++..+.+.-
T Consensus 27 ~~~l~g~ld~~~l~~A~~~lv~rh 50 (175)
T d1q9ja1 27 TIQLRGVIDVDALSDAFDALLETH 50 (175)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhc
Confidence 689999999999999999987753
No 8
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.16 E-value=36 Score=23.62 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=12.6
Q ss_pred eeeccCCCceEEEEEE
Q 040993 116 LKVDKIPGGARLGFIT 131 (194)
Q Consensus 116 lkVDkv~~G~RLaFI~ 131 (194)
.++-+++||+|+ ++.
T Consensus 13 ~~~~~L~NGl~V-~~~ 27 (232)
T d1ppja1 13 TQVSQLDNGLRV-ASE 27 (232)
T ss_dssp CEEEECTTSCEE-EEE
T ss_pred cEEEECCCCCEE-EEE
Confidence 789999999997 444
No 9
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.73 E-value=35 Score=21.27 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.3
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 040993 82 LKLPGNTDLQRFESLLFQWA 101 (194)
Q Consensus 82 ~KLP~n~D~arf~~lLfQWA 101 (194)
-.||.+++++.+.+.+.+||
T Consensus 12 ~nlp~~~te~~l~~~F~~~G 31 (84)
T d1l3ka1 12 GGLSFETTDESLRSHFEQWG 31 (84)
T ss_dssp ESCCTTCCHHHHHHHHGGGS
T ss_pred ECCCCCCCHHHHHHHHHhhc
Confidence 35999999999999888876
No 10
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.51 E-value=34 Score=21.32 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=27.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhcccCCcCcccceeeccCCCceEEEEEEeCC
Q 040993 83 KLPGNTDLQRFESLLFQWANSLCQGANLPLPVPLKVDKIPGGARLGFITVGD 134 (194)
Q Consensus 83 KLP~n~D~arf~~lLfQWAnsL~qganLPLPlPlkVDkv~~G~RLaFI~~~D 134 (194)
.||.+++.+.+.+++.|-|.- ..++-..+| .|||.+.+
T Consensus 7 nlp~~~~~~~l~~~F~~~G~v------------~~~~i~~~g--~afV~f~~ 44 (87)
T d3begb1 7 GLPPSGSWQDLKDHMREAGDV------------CYADVYRDG--TGVVEFVR 44 (87)
T ss_dssp ECCSSCCTTHHHHHHGGGSCE------------EEEEECTTS--EEEEEESS
T ss_pred CCCCcCCHHHHHHHHhhhccc------------ccccccccc--eeeEEeCC
Confidence 489999999999999777631 344445556 58888853
Done!