BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040995
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
Length = 90
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 46 DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQ-KGILAVPCPPEE 104
DV+KG+ AV G K +RFV+ + YL+ P F LL QAE+E+G+ G L +PC +
Sbjct: 24 DVEKGYLAVYV--GEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDV 81
Query: 105 LQNVLKY 111
Q++ +
Sbjct: 82 FQHITSF 88
>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1
Length = 93
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 46 DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQ-KGILAVPCPPEE 104
DV KG+ AV G K +RF + + YL+ P F LL QAE+E+G+ G L +PC EE
Sbjct: 25 DVPKGYAAVYV--GDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEE 82
Query: 105 LQNVLKY 111
NV +
Sbjct: 83 FLNVTAH 89
>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1
Length = 82
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 46 DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK-GILAVPCPPEE 104
D KG+ AV G K KRFV+ + Y++ P F LL QAE+E+G+ G L +PC E
Sbjct: 16 DAPKGYLAVYV--GEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEV 73
Query: 105 LQNV 108
Q +
Sbjct: 74 FQRI 77
>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
Length = 82
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 46 DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK-GILAVPCPPEE 104
D KG+ AV G K KRFV+ + YL+ P F LL QAE+E+G+ G L +PC +
Sbjct: 16 DAPKGYLAVYV--GEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDV 73
Query: 105 LQNV 108
Q +
Sbjct: 74 FQCI 77
>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1
Length = 92
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 46 DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK-GILAVPCPPEE 104
+V KG+ V G K +RF++ + YL+ P F LL QAE+E+G+ G L +PC +E
Sbjct: 24 EVPKGYLVVYV--GDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDE 81
Query: 105 LQNVLKY 111
V +
Sbjct: 82 FLTVTSH 88
>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var.
radiata GN=ARG7 PE=2 SV=1
Length = 92
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 46 DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK-GILAVPCPPEE 104
D KG+ AV G KRFV+ + +L+ P F LL QAE+E+G+ G L +PC +
Sbjct: 24 DAPKGYLAVYV--GENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDL 81
Query: 105 LQNV 108
Q++
Sbjct: 82 FQHI 85
>sp|B1Y7L9|RSMA_LEPCP Ribosomal RNA small subunit methyltransferase A OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rsmA
PE=3 SV=1
Length = 269
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 15 KMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGY-LS 73
++ + +L R L + R K TV+ DV K F +A+ G+P R + L Y +S
Sbjct: 55 RLTVVELDRDLAARLR-----KRPELTVIESDVLKVDFTALAQAAGRPVRVIGNLPYNIS 109
Query: 74 NPEFLSLLEQA----EQEYGFQQKGI 95
+P LLEQ +Q + Q++ +
Sbjct: 110 SPILFHLLEQVASVQDQHFMLQKEVV 135
>sp|Q9W704|RIPA_XENLA RPA-interacting protein A OS=Xenopus laevis GN=rpain-a PE=1 SV=1
Length = 226
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 31 EDVDGKSGGATVVPKDVKKGHFAVVAEKGGKP-----KRFVLELGYLSNPEFLSLLEQAE 85
E + G GG+ +V + +++ A+ +E G P + F L + +P+ L+ LE+ +
Sbjct: 46 ERIHGGVGGSFLVQEVMEEEWKAMQSENGSFPSMWKKEAFSQALNIMRDPDELATLEEIK 105
Query: 86 QEYGFQQKGILAVPCPPEELQNVLKYKKR 114
QE ++K ++ EE +N+L+++++
Sbjct: 106 QELLLEEKAMI------EEFENILQFEEQ 128
>sp|Q60341|FRHB_METJA Coenzyme F420 hydrogenase subunit beta OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=frhB PE=3 SV=1
Length = 287
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 50 GHFAVVAEKGGKPKRFVLELG--YLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQN 107
G F V + P+ + G Y P +S+L+ A +EYG ++ G++ PC ++
Sbjct: 58 GEFKAVPKVATTPEEVLEAAGTKYTVCPN-ISVLKSAVREYGCEKIGVVGTPCQVRAVRK 116
Query: 108 VLKYKKRHRRI 118
++KY R +
Sbjct: 117 LMKYPVGFRHV 127
>sp|Q00391|FRHB_METVO Coenzyme F420 hydrogenase subunit beta OS=Methanococcus voltae
GN=frhB PE=3 SV=1
Length = 280
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 71 YLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKY 111
Y +P +S+L+ A +EY ++ GI+ PC + ++ ++KY
Sbjct: 76 YTVSPN-VSVLKDAVREYALEKVGIVGTPCQVQAIRKLIKY 115
>sp|O84188|G6PD_CHLTR Glucose-6-phosphate 1-dehydrogenase OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=zwf PE=3 SV=1
Length = 439
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 79 SLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHR 116
+ LEQ +Q+YG Q + + PP+ Q +++ RH+
Sbjct: 44 AYLEQLDQQYGTQGNRLFYLSTPPDYFQEIIRNLNRHQ 81
>sp|Q9PKK8|G6PD_CHLMU Glucose-6-phosphate 1-dehydrogenase OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=zwf PE=3 SV=1
Length = 507
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 79 SLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHR 116
S LE +Q+YG + + + PP+ Q +++ RH+
Sbjct: 112 SFLESVDQKYGTKGNRLFYLSTPPDYFQEIIRNLNRHQ 149
>sp|Q3JCB7|TRPA_NITOC Tryptophan synthase alpha chain OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=trpA PE=3 SV=1
Length = 271
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 66 VLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEE 104
V+ +GYL+ E L AEQ G+L V PPEE
Sbjct: 97 VILMGYLNPIEILGYRSFAEQAAAHGVDGLLTVDMPPEE 135
>sp|Q8Y1L5|Y675_RALSO UPF0301 protein RSc0675 OS=Ralstonia solanacearum (strain GMI1000)
GN=RSc0675 PE=3 SV=1
Length = 190
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 58 KGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNV 108
+GG P+RF+L LGY Q E+E G + G L V PE + NV
Sbjct: 120 RGGGPQRFILTLGYAGWSA-----GQLEEEIG--RNGWLTVQADPEIIFNV 163
>sp|Q13E21|MNMG_RHOPS tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Rhodopseudomonas palustris (strain BisB5) GN=mnmG
PE=3 SV=1
Length = 626
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 17 LITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYL 72
L TK RGLF A + ++G +G + + G AV+A GG P F GYL
Sbjct: 354 LQTKRLRGLFLAGQ--INGTTGYEEAAAQGLVAGLNAVLAAGGGDPAVFDRADGYL 407
>sp|O32259|LUTC_BACSU Lactate utilization protein C OS=Bacillus subtilis (strain 168)
GN=lutC PE=1 SV=1
Length = 240
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 17 LITKLQRGLFSASREDVDGKSGGATVVPKD 46
LI GL+ A RE V SGG ++PKD
Sbjct: 66 LIETDSTGLYDALREQVSRFSGGPVIIPKD 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,144,472
Number of Sequences: 539616
Number of extensions: 1907035
Number of successful extensions: 4942
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4926
Number of HSP's gapped (non-prelim): 28
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)