Query 040995
Match_columns 122
No_of_seqs 119 out of 634
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 80.8 5.2 0.00018 25.6 6.0 62 52-117 11-75 (109)
2 3drz_A BTB/POZ domain-containi 68.7 11 0.00039 25.0 5.4 64 50-118 6-74 (107)
3 1und_A Advillin, P92; actin bi 51.3 3.4 0.00012 23.7 0.1 19 70-88 1-19 (37)
4 1y74_B MLIN-2/CASK, peripheral 47.9 9.6 0.00033 22.3 1.8 20 70-89 26-49 (50)
5 2al3_A TUG long isoform; TUG U 47.2 16 0.00056 24.6 3.1 35 60-96 17-52 (90)
6 1vd2_A Protein kinase C, IOTA 45.0 58 0.002 21.6 5.6 44 50-97 5-48 (89)
7 2xko_C PIPX, global nitrogen r 37.9 4.2 0.00015 27.7 -1.0 11 70-80 5-15 (89)
8 3nct_A Protein PSIB; DNA bindi 37.2 80 0.0027 23.0 5.6 51 42-92 78-130 (144)
9 1s1g_A Potassium voltage-gated 36.3 39 0.0013 23.3 3.8 65 48-118 11-77 (124)
10 3ga1_A Nucleus accumbens-assoc 33.5 60 0.002 21.3 4.3 48 63-117 43-94 (129)
11 2vpk_A Myoneurin; transcriptio 32.2 98 0.0034 19.7 5.1 48 63-117 32-84 (116)
12 2nz0_B Potassium voltage-gated 32.0 50 0.0017 23.3 3.8 65 48-118 33-99 (140)
13 2ccq_A P97, peptide N-glycanas 29.7 36 0.0012 22.8 2.6 44 71-114 45-97 (99)
14 1w8x_N Protein P31, protein C, 29.6 13 0.00045 26.3 0.4 29 47-78 85-123 (126)
15 1yu8_X Villin; alpha helix, 3- 28.3 13 0.00046 23.7 0.2 19 70-88 31-49 (67)
16 2cu1_A Mitogen-activated prote 27.7 1.3E+02 0.0044 20.8 5.2 54 63-118 18-77 (103)
17 1r29_A B-cell lymphoma 6 prote 27.4 1E+02 0.0035 19.9 4.6 51 63-117 39-93 (127)
18 3n5b_B ASR0485 protein; PII, P 26.2 8.9 0.0003 27.0 -1.0 11 70-80 28-38 (112)
19 1zav_U 50S ribosomal protein L 25.5 44 0.0015 18.0 2.0 14 76-89 17-30 (30)
20 1qzp_A Dematin; villin headpie 25.4 12 0.0004 23.9 -0.5 19 70-88 32-50 (68)
21 2lkt_A Retinoic acid receptor 24.4 32 0.0011 23.2 1.6 10 50-59 22-31 (125)
22 1nn7_A Potassium channel KV4.2 24.4 31 0.0011 23.0 1.5 61 52-118 2-64 (105)
23 2ybf_B E3 ubiquitin-protein li 24.1 41 0.0014 18.0 1.6 15 74-88 8-22 (27)
24 1ujs_A Actin-binding LIM prote 24.0 17 0.00059 24.4 0.1 20 70-89 46-65 (88)
25 3qli_A Coenzyme A transferase; 23.8 44 0.0015 28.2 2.6 46 44-90 401-454 (455)
26 3pmi_A PWWP domain-containing 23.2 24 0.00084 25.5 0.8 30 60-89 46-78 (134)
27 2k6m_S Supervillin; SVHP, HP, 23.1 15 0.00051 23.5 -0.3 20 70-89 31-50 (67)
28 3ezo_A Malonyl COA-acyl carrie 21.9 53 0.0018 25.5 2.6 41 49-91 9-49 (318)
29 2lqo_A Putative glutaredoxin R 21.6 52 0.0018 21.2 2.1 23 70-92 65-87 (92)
30 4ajy_C Transcription elongatio 21.5 1.2E+02 0.004 19.4 3.9 52 63-115 12-65 (97)
31 2if5_A Zinc finger and BTB dom 21.4 1.4E+02 0.005 18.9 4.4 52 63-117 35-89 (120)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=80.76 E-value=5.2 Score=25.60 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=43.8
Q ss_pred EEEEeecCCceeeEEEeeccc--ccHHHHHHHHHHHHhcCCCCCCceEec-CCHHHHHHHHHHHHhCcc
Q 040995 52 FAVVAEKGGKPKRFVLELGYL--SNPEFLSLLEQAEQEYGFQQKGILAVP-CPPEELQNVLKYKKRHRR 117 (122)
Q Consensus 52 ~~VyV~~G~e~~RfvVpv~yL--~~P~F~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~vl~~~~~~~~ 117 (122)
+.+.|++|++.++|-+.-..| ..|.|+.++...-.|- . ..|.+| .+++.|+.+|..+-.++.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~~ 75 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDEI 75 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCCc
Confidence 345565555568888888887 6899999997644332 2 678897 799999999998887764
No 2
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=68.71 E-value=11 Score=25.03 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=46.1
Q ss_pred CeEEEEeecCCceeeEEEeecccc-cH--HHHHHHHHHHHhcC--CCCCCceEecCCHHHHHHHHHHHHhCccc
Q 040995 50 GHFAVVAEKGGKPKRFVLELGYLS-NP--EFLSLLEQAEQEYG--FQQKGILAVPCPPEELQNVLKYKKRHRRI 118 (122)
Q Consensus 50 G~~~VyV~~G~e~~RfvVpv~yL~-~P--~F~~LL~~aeeEfG--~~~~G~l~iPC~~~~Fe~vl~~~~~~~~~ 118 (122)
..+.+.|| | ++|.+...-|. +| .|..|.... .++. .+.+|.+-|..++..|++||..++.|.-+
T Consensus 6 ~~v~LNVG-G---~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~ 74 (107)
T 3drz_A 6 KWVRLNVG-G---TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLV 74 (107)
T ss_dssp CEEEEEET-T---EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCC
T ss_pred CEEEEEEC-C---EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeC
Confidence 56777884 3 89999887775 34 566664321 1232 34579999999999999999999998754
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=51.27 E-value=3.4 Score=23.67 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=17.0
Q ss_pred cccccHHHHHHHHHHHHhc
Q 040995 70 GYLSNPEFLSLLEQAEQEY 88 (122)
Q Consensus 70 ~yL~~P~F~~LL~~aeeEf 88 (122)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 4
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=47.89 E-value=9.6 Score=22.31 Aligned_cols=20 Identities=35% Similarity=0.732 Sum_probs=15.5
Q ss_pred cccccHHHHHHHHH----HHHhcC
Q 040995 70 GYLSNPEFLSLLEQ----AEQEYG 89 (122)
Q Consensus 70 ~yL~~P~F~~LL~~----aeeEfG 89 (122)
..|+.|-||.||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 57899999999975 556664
No 5
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=47.20 E-value=16 Score=24.58 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=26.1
Q ss_pred CceeeEEEeecccccHHHHHHHHHHHHhcCCCC-CCce
Q 040995 60 GKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQ-KGIL 96 (122)
Q Consensus 60 ~e~~RfvVpv~yL~~P~F~~LL~~aeeEfG~~~-~G~l 96 (122)
...+|+.|++. ..-.+.++|++|.+.|||+. +..|
T Consensus 17 ~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 17 PNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp TTSCEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred CCCcEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeE
Confidence 33589999883 34467889999999999975 3444
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=45.00 E-value=58 Score=21.57 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=30.2
Q ss_pred CeEEEEeecCCceeeEEEeecccccHHHHHHHHHHHHhcCCCCCCceE
Q 040995 50 GHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILA 97 (122)
Q Consensus 50 G~~~VyV~~G~e~~RfvVpv~yL~~P~F~~LL~~aeeEfG~~~~G~l~ 97 (122)
|-+.|=+.-+++..|+-||. ...|++|.++-.+-|++..+.+++
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~ 48 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFT 48 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEE
T ss_pred CeEEEEEEeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEE
Confidence 33455333244577888887 468999999999999986444333
No 7
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=37.85 E-value=4.2 Score=27.66 Aligned_cols=11 Identities=45% Similarity=0.797 Sum_probs=8.6
Q ss_pred cccccHHHHHH
Q 040995 70 GYLSNPEFLSL 80 (122)
Q Consensus 70 ~yL~~P~F~~L 80 (122)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999998644
No 8
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=37.25 E-value=80 Score=23.00 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=42.7
Q ss_pred cCCCCCCCCeEEEEeecCCceeeEEEeecccccHHHHHHHHHHHH--hcCCCC
Q 040995 42 VVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQ--EYGFQQ 92 (122)
Q Consensus 42 ~~~~~v~kG~~~VyV~~G~e~~RfvVpv~yL~~P~F~~LL~~aee--EfG~~~ 92 (122)
|+|.++-.++++|++-.|.+.=+.+--.+-++--.....|..+++ ..||.+
T Consensus 78 CSpG~~sP~W~~Vl~~~gG~pfavv~~~~~~~Pe~Inh~L~l~a~ld~~Gys~ 130 (144)
T 3nct_A 78 CSPGDVSQVWVLVLVNAGGEPFAVVQVQRRFASEAVSHSLALAASLDTQGYSV 130 (144)
T ss_dssp ECSSSSCSSEEEEEEEGGGCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCH
T ss_pred eCCCCCCcceEEEEEcCCCcEEEEEEecCccCHHHHHHHHHHHHHHhhcCCcH
Confidence 789999999999999888777777777788887888899999885 667765
No 9
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=36.29 E-value=39 Score=23.33 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=44.9
Q ss_pred CCCeEEEEeecCCceeeEEEeecccc-cHHHHHHHHHHHHhcCCC-CCCceEecCCHHHHHHHHHHHHhCccc
Q 040995 48 KKGHFAVVAEKGGKPKRFVLELGYLS-NPEFLSLLEQAEQEYGFQ-QKGILAVPCPPEELQNVLKYKKRHRRI 118 (122)
Q Consensus 48 ~kG~~~VyV~~G~e~~RfvVpv~yL~-~P~F~~LL~~aeeEfG~~-~~G~l~iPC~~~~Fe~vl~~~~~~~~~ 118 (122)
....+.+.|| | .||.+..+-|. +|- .+|..++...-++ .+|.+-|..+...|+.||..++.|+-+
T Consensus 11 ~~~~V~LNVG-G---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~ 77 (124)
T 1s1g_A 11 QDELIVLNVS-G---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLH 77 (124)
T ss_dssp -CCEEEEEET-T---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBC
T ss_pred CCCEEEEEeC-C---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCC
Confidence 3466777884 3 89999887663 232 2333343333343 479999999999999999999998653
No 10
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=33.52 E-value=60 Score=21.29 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=37.1
Q ss_pred eeEEEeecccc--cHHHHHHHHHHHHhcCCCCCCceEec--CCHHHHHHHHHHHHhCcc
Q 040995 63 KRFVLELGYLS--NPEFLSLLEQAEQEYGFQQKGILAVP--CPPEELQNVLKYKKRHRR 117 (122)
Q Consensus 63 ~RfvVpv~yL~--~P~F~~LL~~aeeEfG~~~~G~l~iP--C~~~~Fe~vl~~~~~~~~ 117 (122)
++|-+.-..|. .|.|+.++... ....|.|| .+.+.|+.+|..+=.++-
T Consensus 43 ~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg~~ 94 (129)
T 3ga1_A 43 HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTGRL 94 (129)
T ss_dssp EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHSEE
T ss_pred EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCCcc
Confidence 56666655554 69999998775 46789996 899999999998877653
No 11
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=32.17 E-value=98 Score=19.66 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=37.0
Q ss_pred eeEEEeeccc--ccHHHHHHHHHHHHhcCCCCCCceEec---CCHHHHHHHHHHHHhCcc
Q 040995 63 KRFVLELGYL--SNPEFLSLLEQAEQEYGFQQKGILAVP---CPPEELQNVLKYKKRHRR 117 (122)
Q Consensus 63 ~RfvVpv~yL--~~P~F~~LL~~aeeEfG~~~~G~l~iP---C~~~~Fe~vl~~~~~~~~ 117 (122)
++|-+.-..| ..|.|+.++... .++.+.|+ .+++.|+.+|..+=.++-
T Consensus 32 ~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~ 84 (116)
T 2vpk_A 32 FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGTL 84 (116)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSCC
T ss_pred EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCCc
Confidence 5676666666 579999988654 35678887 799999999998877764
No 12
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=31.98 E-value=50 Score=23.30 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=45.6
Q ss_pred CCCeEEEEeecCCceeeEEEeecccc-cHHHHHHHHHHHHhcCCC-CCCceEecCCHHHHHHHHHHHHhCccc
Q 040995 48 KKGHFAVVAEKGGKPKRFVLELGYLS-NPEFLSLLEQAEQEYGFQ-QKGILAVPCPPEELQNVLKYKKRHRRI 118 (122)
Q Consensus 48 ~kG~~~VyV~~G~e~~RfvVpv~yL~-~P~F~~LL~~aeeEfG~~-~~G~l~iPC~~~~Fe~vl~~~~~~~~~ 118 (122)
....+.+.|| | .||.+..+-|. +|- .+|..+....-++ .+|.+-|..+...|++||..++.|+-+
T Consensus 33 ~~~~V~LNVG-G---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~ 99 (140)
T 2nz0_B 33 QDELIVLNVS-G---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLH 99 (140)
T ss_dssp CCCEEEEEET-T---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSBC
T ss_pred CCCEEEEEEC-C---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCcC
Confidence 4567777884 3 89999877653 332 2333344333343 479999999999999999999998754
No 13
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=29.69 E-value=36 Score=22.77 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHH------HHhcCCCC-CCceEec--CCHHHHHHHHHHHHh
Q 040995 71 YLSNPEFLSLLEQA------EQEYGFQQ-KGILAVP--CPPEELQNVLKYKKR 114 (122)
Q Consensus 71 yL~~P~F~~LL~~a------eeEfG~~~-~G~l~iP--C~~~~Fe~vl~~~~~ 114 (122)
-++||.|++-+... =...||.. ++.+++| ++....+.+...+..
T Consensus 45 r~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~~ 97 (99)
T 2ccq_A 45 RIGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAI 97 (99)
T ss_dssp ETTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHHh
Confidence 46888898865432 24679975 5779998 777778777776653
No 14
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=29.63 E-value=13 Score=26.26 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=17.5
Q ss_pred CCCCeEEEEeecCCceeeEE----------EeecccccHHHH
Q 040995 47 VKKGHFAVVAEKGGKPKRFV----------LELGYLSNPEFL 78 (122)
Q Consensus 47 v~kG~~~VyV~~G~e~~Rfv----------Vpv~yL~~P~F~ 78 (122)
=..|||||+|. | +-.|+ +|+-|||.|+-|
T Consensus 85 G~QGYfPlL~~-~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 85 GKQGYFPLLVP-G--RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCSSCCEEEC-C--SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CCcccceeecc-c--hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 36799999983 2 34444 789999988754
No 15
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=28.26 E-value=13 Score=23.73 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=18.1
Q ss_pred cccccHHHHHHHHHHHHhc
Q 040995 70 GYLSNPEFLSLLEQAEQEY 88 (122)
Q Consensus 70 ~yL~~P~F~~LL~~aeeEf 88 (122)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
No 16
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.73 E-value=1.3e+02 Score=20.76 Aligned_cols=54 Identities=15% Similarity=0.322 Sum_probs=38.2
Q ss_pred eeEEEeecccccHHHHHHHHHHHHhcCCC-----CCCceEecC-CHHHHHHHHHHHHhCccc
Q 040995 63 KRFVLELGYLSNPEFLSLLEQAEQEYGFQ-----QKGILAVPC-PPEELQNVLKYKKRHRRI 118 (122)
Q Consensus 63 ~RfvVpv~yL~~P~F~~LL~~aeeEfG~~-----~~G~l~iPC-~~~~Fe~vl~~~~~~~~~ 118 (122)
++++|++. .--.|.+|+.++.+-||.. .+--+.||- .-++.++++.++.+..+-
T Consensus 18 EkRIi~f~--RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrss~~ 77 (103)
T 2cu1_A 18 EKRILQFP--RPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSIHM 77 (103)
T ss_dssp EEEEEEEE--SSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHCSSC
T ss_pred eEEEEecc--CCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccCCcc
Confidence 44455432 1224999999999999975 356677773 566789999998887554
No 17
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=27.35 E-value=1e+02 Score=19.90 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=39.0
Q ss_pred eeEEEeeccc--ccHHHHHHHHHHHHhcCCCCCCceEe-c-CCHHHHHHHHHHHHhCcc
Q 040995 63 KRFVLELGYL--SNPEFLSLLEQAEQEYGFQQKGILAV-P-CPPEELQNVLKYKKRHRR 117 (122)
Q Consensus 63 ~RfvVpv~yL--~~P~F~~LL~~aeeEfG~~~~G~l~i-P-C~~~~Fe~vl~~~~~~~~ 117 (122)
+.|-+.-..| ..|.|+.++...-.| ....|.| + .+++.|+.+|..+-.++.
T Consensus 39 ~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~~ 93 (127)
T 1r29_A 39 EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSRL 93 (127)
T ss_dssp EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCCc
Confidence 5666666666 689999999754333 4678999 4 799999999998877764
No 18
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=26.21 E-value=8.9 Score=27.04 Aligned_cols=11 Identities=27% Similarity=0.612 Sum_probs=8.7
Q ss_pred cccccHHHHHH
Q 040995 70 GYLSNPEFLSL 80 (122)
Q Consensus 70 ~yL~~P~F~~L 80 (122)
.|||||.|.-|
T Consensus 28 ~YLNHPTFGLL 38 (112)
T 3n5b_B 28 TYINHPTWGLL 38 (112)
T ss_dssp CEEEETTTEEE
T ss_pred hhccCCccchh
Confidence 49999998654
No 19
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=25.54 E-value=44 Score=18.00 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 040995 76 EFLSLLEQAEQEYG 89 (122)
Q Consensus 76 ~F~~LL~~aeeEfG 89 (122)
...+|.+..||+||
T Consensus 17 El~eLvk~lEe~fG 30 (30)
T 1zav_U 17 ELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 34688899999997
No 20
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=25.44 E-value=12 Score=23.95 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=18.0
Q ss_pred cccccHHHHHHHHHHHHhc
Q 040995 70 GYLSNPEFLSLLEQAEQEY 88 (122)
Q Consensus 70 ~yL~~P~F~~LL~~aeeEf 88 (122)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
No 21
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=24.41 E-value=32 Score=23.18 Aligned_cols=10 Identities=30% Similarity=0.581 Sum_probs=8.5
Q ss_pred CeEEEEeecC
Q 040995 50 GHFAVVAEKG 59 (122)
Q Consensus 50 G~~~VyV~~G 59 (122)
-|.+||||||
T Consensus 22 ~H~gIYvGdg 31 (125)
T 2lkt_A 22 EHWALYIGDG 31 (125)
T ss_dssp CEEEEEEETT
T ss_pred cEEEEEeCCC
Confidence 4899999877
No 22
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=24.41 E-value=31 Score=22.96 Aligned_cols=61 Identities=16% Similarity=0.339 Sum_probs=39.0
Q ss_pred EEEEeecCCceeeEEEeecccc-cHHHHHHHHHHHHhcCCC-CCCceEecCCHHHHHHHHHHHHhCccc
Q 040995 52 FAVVAEKGGKPKRFVLELGYLS-NPEFLSLLEQAEQEYGFQ-QKGILAVPCPPEELQNVLKYKKRHRRI 118 (122)
Q Consensus 52 ~~VyV~~G~e~~RfvVpv~yL~-~P~F~~LL~~aeeEfG~~-~~G~l~iPC~~~~Fe~vl~~~~~~~~~ 118 (122)
+.+.|| | .||.+..+-|. +|- .+|..++...-++ .+|.+-|..+...|++||..++.|+-+
T Consensus 2 V~LNVG-G---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~ 64 (105)
T 1nn7_A 2 IVLNVS-G---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLH 64 (105)
T ss_dssp EEEEET-T---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBC
T ss_pred EEEEEC-C---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhcCCCC
Confidence 345563 3 78887766542 231 1222233322233 469999999999999999999998643
No 23
>2ybf_B E3 ubiquitin-protein ligase RAD18; E2 ubiquitin conjugating enzyme, E3 ubiquitin ligase translesion synthesis, PCNA ubiquitination; 2.00A {Homo sapiens}
Probab=24.08 E-value=41 Score=17.97 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHHHhc
Q 040995 74 NPEFLSLLEQAEQEY 88 (122)
Q Consensus 74 ~P~F~~LL~~aeeEf 88 (122)
...||-|+++|...|
T Consensus 8 qneFq~LVDqakk~y 22 (27)
T 2ybf_B 8 KSEFQLLVDQARKGY 22 (27)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 467999999998765
No 24
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=24.01 E-value=17 Score=24.40 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=18.6
Q ss_pred cccccHHHHHHHHHHHHhcC
Q 040995 70 GYLSNPEFLSLLEQAEQEYG 89 (122)
Q Consensus 70 ~yL~~P~F~~LL~~aeeEfG 89 (122)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999983
No 25
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=23.83 E-value=44 Score=28.21 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCCCCCCeEEEEeec-------CCc-eeeEEEeecccccHHHHHHHHHHHHhcCC
Q 040995 44 PKDVKKGHFAVVAEK-------GGK-PKRFVLELGYLSNPEFLSLLEQAEQEYGF 90 (122)
Q Consensus 44 ~~~v~kG~~~VyV~~-------G~e-~~RfvVpv~yL~~P~F~~LL~~aeeEfG~ 90 (122)
+.+.+++++-+.|.+ |.. ++|-.-=++ +.||.||+.|.+++++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 345577777666542 432 344433334 8999999999998888764
No 26
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=23.19 E-value=24 Score=25.49 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=25.7
Q ss_pred CceeeEEEeeccccc---HHHHHHHHHHHHhcC
Q 040995 60 GKPKRFVLELGYLSN---PEFLSLLEQAEQEYG 89 (122)
Q Consensus 60 ~e~~RfvVpv~yL~~---P~F~~LL~~aeeEfG 89 (122)
.+.+=|.||+.-|+| -.-++|+++|.|.||
T Consensus 46 ~ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 46 PKMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TTSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred cccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 467889999998887 568999999999987
No 27
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=23.10 E-value=15 Score=23.45 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.6
Q ss_pred cccccHHHHHHHHHHHHhcC
Q 040995 70 GYLSNPEFLSLLEQAEQEYG 89 (122)
Q Consensus 70 ~yL~~P~F~~LL~~aeeEfG 89 (122)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999983
No 28
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=21.87 E-value=53 Score=25.51 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=27.4
Q ss_pred CCeEEEEeecCCceeeEEEeecccccHHHHHHHHHHHHhcCCC
Q 040995 49 KGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQ 91 (122)
Q Consensus 49 kG~~~VyV~~G~e~~RfvVpv~yL~~P~F~~LL~~aeeEfG~~ 91 (122)
.-..-||-|.|.. ..=.--+.+++|.|++.++++.+-+|++
T Consensus 9 ~~~~f~F~GQGsQ--~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 9 MKFAFVFPGQGSQ--SVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CCEEEEECCTTCC--CTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CCeEEEECCcchh--hhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 3566677766532 1111123338999999999999999875
No 29
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=21.59 E-value=52 Score=21.17 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.8
Q ss_pred cccccHHHHHHHHHHHHhcCCCC
Q 040995 70 GYLSNPEFLSLLEQAEQEYGFQQ 92 (122)
Q Consensus 70 ~yL~~P~F~~LL~~aeeEfG~~~ 92 (122)
..+..|...+|.+..+|--|+++
T Consensus 65 ~~l~~~~~~el~~~L~el~gL~~ 87 (92)
T 2lqo_A 65 STLTNPSADEVKAKLVKIAGLEH 87 (92)
T ss_dssp CEEESCCHHHHHHHHHHHHCCSC
T ss_pred EEEeCCCHHHHHHHHHHhcCCcc
Confidence 45667888999988888888876
No 30
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=21.55 E-value=1.2e+02 Score=19.36 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=34.3
Q ss_pred eeEEEeecc-cccHHHHHHHHHHHHhcCCCCCCceEec-CCHHHHHHHHHHHHhC
Q 040995 63 KRFVLELGY-LSNPEFLSLLEQAEQEYGFQQKGILAVP-CPPEELQNVLKYKKRH 115 (122)
Q Consensus 63 ~RfvVpv~y-L~~P~F~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~vl~~~~~~ 115 (122)
+.|.|+-.. ...|.|+.+++... .+.-..+++|.|| -+...++.|+.-+..+
T Consensus 12 ~~F~v~r~vA~~S~~ik~m~~~~~-~~~E~~~~~I~l~~V~~~iL~kViey~~~h 65 (97)
T 4ajy_C 12 HEFIVKREHALTSGTIKAMLSGPG-QFAENETNEVNFREIPSHVLSKVCMYFTYK 65 (97)
T ss_dssp CEEEEEHHHHTTSHHHHHHHCCC---------CEEECTTSCHHHHHHHHHHHHHH
T ss_pred cEEEecHHHHHHhHHHHHHHHhCC-CccccCCCceECCCCCHHHHHHHHHHHHHh
Confidence 678888665 34788999886411 0000246889988 8899999999988743
No 31
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=21.42 E-value=1.4e+02 Score=18.88 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=37.0
Q ss_pred eeEEEeeccc--ccHHHHHHHHHHHHhcCCCCCCceEec-CCHHHHHHHHHHHHhCcc
Q 040995 63 KRFVLELGYL--SNPEFLSLLEQAEQEYGFQQKGILAVP-CPPEELQNVLKYKKRHRR 117 (122)
Q Consensus 63 ~RfvVpv~yL--~~P~F~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~vl~~~~~~~~ 117 (122)
++|-+.-..| ..|.|+.++...-.| .....|.++ .+++.|+.+|..+=.++.
T Consensus 35 ~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~~ 89 (120)
T 2if5_A 35 REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTATL 89 (120)
T ss_dssp EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSCC
T ss_pred EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCCC
Confidence 5676666666 479999998753333 235678888 699999999998877764
Done!