BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040997
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLE-EQIRL 62
PHV+++P P QGH+ PL + ++ L GF +TFVNT+Y HKR+++S K +
Sbjct: 9 PHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNF 68
Query: 63 VSIPDGMEPWEDRNDFGKLIENFLQVMPGKLEKLIEEINSREDEK-----IDCFIADGNM 117
SIPDG+ P E D + + Q + K E+ +R + + C ++D M
Sbjct: 69 ESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCM 128
Query: 118 GWSLEVAKKM 127
++++ A++
Sbjct: 129 SFTIQAAEEF 138
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 3 SPHVLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFV 37
+PHV ++P P GH+IPL+EF++ L HG VTFV
Sbjct: 6 TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV 41
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46
H+L GHV P L LA+ G R+T+V T + V
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEV 47
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 6 VLVMPGPAQGHVIPLLEFSQCLAKHG-------FRVTFVN---TDYYHKRVVESLQGKNY 55
++ +P P GH+ LEF++ L H F + F D Y K V+ S
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLAS------ 65
Query: 56 LEEQIRLVSIPDGMEP 71
+ QI+L+ +P+ +EP
Sbjct: 66 -QPQIQLIDLPE-VEP 79
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
Length = 465
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 6 VLVMPGPAQGHVIPLLEFSQCLAKHG-------FRVTFVN---TDYYHKRVVESLQGKNY 55
++ +P P GH+ LEF++ L H F + F D Y K V+ S
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLAS------ 65
Query: 56 LEEQIRLVSIPDGMEP 71
+ QI+L+ +P+ +EP
Sbjct: 66 -QPQIQLIDLPE-VEP 79
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 42 YHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIENFLQVMPGKLEKLIEEIN 101
Y +RV+ +L K + E+ + P ME WE + F +L+E ++ KL + EEIN
Sbjct: 364 YSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEADERI-TSKLTQ--EEIN 420
Query: 102 SREDEKIDCFIADGNM 117
+CF + +M
Sbjct: 421 -------ECFNYEHHM 429
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Query: 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVS 64
HV V+ P H PLL + +A +VTF + +L I+ +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFL-PNIKYYN 73
Query: 65 IPDGM-EPWEDRNDFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEV 123
+ DG+ + + + + I F++ M + +I+E + + I C + D + ++
Sbjct: 74 VHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADL 133
Query: 124 AKKMN 128
A++M+
Sbjct: 134 AEEMH 138
>pdb|1F0K|A Chain A, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1F0K|B Chain B, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1NLM|A Chain A, Crystal Structure Of Murg:glcnac Complex
pdb|1NLM|B Chain B, Crystal Structure Of Murg:glcnac Complex
Length = 364
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39
++VM G GHV P L + L G++V ++ T
Sbjct: 8 RLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGT 42
>pdb|2QEN|A Chain A, The Walker-type Atpase Paby2304 Of Pyrococcus Abyssi
Length = 350
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 53 KNYLEEQIRLVSIPDGMEPW-------EDRN-DFGKLIENFLQVMPGKLEKLIEEINSRE 104
+N +EE + L+ DG+ W RN DFG+ ++ L+V G + +EE+ R
Sbjct: 225 ENEIEEAVELL---DGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRS 281
Query: 105 DEKIDCF--IADGNMGWSL 121
+D IA G WSL
Sbjct: 282 PRYVDILRAIALGYNRWSL 300
>pdb|1QVB|A Chain A, Crystal Structure Of The Beta-Glycosidase From The
Hyperthermophile Thermosphaera Aggregans
pdb|1QVB|B Chain B, Crystal Structure Of The Beta-Glycosidase From The
Hyperthermophile Thermosphaera Aggregans
Length = 481
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPW 72
++G I +E+ + LA R+ ++ +YY + V + + K + + P G+ P
Sbjct: 295 SKGSSIINVEYRRDLAN---RLDWLGVNYYSRLVYKIVDDKPIILHGYGFLCTPGGISPA 351
Query: 73 EDR-NDFGKLIENFLQVMPGKLEKLIEEINSR 103
E+ +DFG +V P L L++E+ +R
Sbjct: 352 ENPCSDFG------WEVYPEGLYLLLKELYNR 377
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTF 36
H+ + A GHV P LE + L G RVT+
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTY 40
>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
Length = 393
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 70 EPWEDRNDFGKLIENFLQVMPGKLEKLIEEIN 101
EPW + + FGK+ LQ L+E+IN
Sbjct: 120 EPWVEEDKFGKVKFAVLQTYGDTTHTLVEKIN 151
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 22 EFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKL 81
E L KHG V K + ++ +Y+ ++ R EPW +++ FGK+
Sbjct: 74 EMGDHLVKHGDGV---------KDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFGKV 124
Query: 82 IENFLQVMPGKLEKLIEEIN 101
LQ L+E++N
Sbjct: 125 KFAVLQTYGDTTHTLVEKMN 144
>pdb|3STP|A Chain A, Crystal Structure Of A Putative Galactonate Dehydratase
Length = 412
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 11/45 (24%)
Query: 89 MPG------KLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKM 127
MPG ++E + E I D ++C+ MGW+L+ AK+M
Sbjct: 210 MPGMRENLKRVEAVREVIGYDNDLMLECY-----MGWNLDYAKRM 249
>pdb|3S2U|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa
Murg:udp-Glcnac Substrate Complex
Length = 365
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39
+VL+M G GHV P L ++ G+ V ++ T
Sbjct: 4 NVLIMAGGTGGHVFPALACAREFQARGYAVHWLGT 38
>pdb|3IKL|A Chain A, Crystal Structure Of Pol Gb Delta-I4.
pdb|3IKL|B Chain B, Crystal Structure Of Pol Gb Delta-I4
Length = 459
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 78 FGKLIENFLQVMPGKLEKL---IEEINSREDE 106
F +L+EN + V PG LE + +E++ S+ DE
Sbjct: 371 FNELLENGISVWPGYLETMQSSLEQLYSKYDE 402
>pdb|3IUO|A Chain A, The Crystal Structure Of The C-Terminal Domain Of The
Atp-Dependent Dna Helicase Recq From Porphyromonas
Gingivalis To 1.6a
pdb|3IUO|B Chain B, The Crystal Structure Of The C-Terminal Domain Of The
Atp-Dependent Dna Helicase Recq From Porphyromonas
Gingivalis To 1.6a
Length = 122
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
Query: 40 DYYHKRVVESLQ------GKNYLEEQIRLVSI 65
+Y+ + +SL+ GK+Y EE+IRLV I
Sbjct: 83 EYFKESTTDSLEEAXQELGKDYSEEEIRLVRI 114
>pdb|3IKM|B Chain B, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|C Chain C, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|E Chain E, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|F Chain F, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 427
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 78 FGKLIENFLQVMPGKLEKL---IEEINSREDE 106
F +L+EN + V PG LE + +E++ S+ DE
Sbjct: 345 FNELLENGISVWPGYLETMQSSLEQLYSKYDE 376
>pdb|2G4C|A Chain A, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|B Chain B, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|C Chain C, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|D Chain D, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
Length = 474
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 78 FGKLIENFLQVMPGKLEKL---IEEINSREDE 106
F +L+EN + V PG LE + +E++ S+ DE
Sbjct: 392 FNELLENGISVWPGYLETMQSSLEQLYSKYDE 423
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 76 NDFGKLIENFLQVMPGKLEKLIEEINSREDEKID 109
N+ GK++ L V GK+ K+ E I + E ID
Sbjct: 12 NEEGKIVATDLLVQDGKIAKVAENITADNAEVID 45
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 93 LEKLIEEINSREDEKIDCF 111
L+ L+++IN R EKI CF
Sbjct: 174 LKDLVQQINIRRQEKIKCF 192
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 93 LEKLIEEINSREDEKIDCF 111
L+ L+++IN R EKI CF
Sbjct: 174 LKDLVQQINIRRQEKIKCF 192
>pdb|4HPQ|C Chain C, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
pdb|4HPQ|F Chain F, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
Length = 413
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 52 GKNYLEE---QIRLVSIPDGMEPWEDRNDFGKLIENFLQVMPGKLEKLIEEINSREDEKI 108
G+N +EE Q LV + + M+ W+ N + M KL+ + EI+ + + K+
Sbjct: 72 GRNLIEEEWSQTVLVRLVNDMKFWQ----------NEITKMMNKLDNITNEIDQQHNSKL 121
Query: 109 DCFIA 113
FI+
Sbjct: 122 GDFIS 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,249,040
Number of Sequences: 62578
Number of extensions: 168242
Number of successful extensions: 459
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 35
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)