Query 040997
Match_columns 128
No_of_seqs 127 out of 1139
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:50:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02173 UDP-glucosyl transfer 99.9 4.8E-27 1E-31 176.1 14.4 119 3-128 5-125 (449)
2 PLN02152 indole-3-acetate beta 99.9 2.3E-26 5E-31 172.7 14.7 123 1-128 1-127 (455)
3 PLN02410 UDP-glucoronosyl/UDP- 99.9 4.1E-26 8.8E-31 171.4 14.0 119 3-128 7-126 (451)
4 PLN02562 UDP-glycosyltransfera 99.9 7.8E-26 1.7E-30 170.0 14.9 119 3-128 6-124 (448)
5 PLN02555 limonoid glucosyltran 99.9 1.4E-25 2.9E-30 169.5 14.7 125 3-128 7-137 (480)
6 PLN02534 UDP-glycosyltransfera 99.9 5.3E-25 1.2E-29 166.6 14.5 122 3-128 8-140 (491)
7 PLN00164 glucosyltransferase; 99.9 8E-25 1.7E-29 165.6 14.0 123 1-128 1-131 (480)
8 PLN02670 transferase, transfer 99.9 6.1E-25 1.3E-29 165.6 12.7 117 3-128 6-131 (472)
9 PLN02863 UDP-glucoronosyl/UDP- 99.9 8.4E-25 1.8E-29 165.3 13.4 119 2-128 8-135 (477)
10 PLN02210 UDP-glucosyl transfer 99.9 1.8E-24 3.8E-29 162.9 13.5 115 3-128 8-124 (456)
11 PLN02207 UDP-glycosyltransfera 99.9 4.3E-24 9.3E-29 160.9 14.5 127 1-128 1-136 (468)
12 PLN02992 coniferyl-alcohol glu 99.9 5.2E-24 1.1E-28 160.8 13.7 117 2-128 4-125 (481)
13 PLN03004 UDP-glycosyltransfera 99.9 6.3E-24 1.4E-28 159.5 14.0 126 1-128 1-133 (451)
14 PLN02448 UDP-glycosyltransfera 99.9 5.3E-24 1.2E-28 160.6 13.7 117 3-128 10-129 (459)
15 PLN03015 UDP-glucosyl transfer 99.9 8.2E-24 1.8E-28 159.2 14.3 122 1-128 1-128 (470)
16 PLN02554 UDP-glycosyltransfera 99.9 8.2E-24 1.8E-28 160.3 12.8 122 3-128 2-133 (481)
17 PLN00414 glycosyltransferase f 99.9 1.8E-23 3.9E-28 157.0 13.3 115 3-128 4-127 (446)
18 PLN02764 glycosyltransferase f 99.9 3.8E-23 8.3E-28 155.1 13.6 117 3-128 5-128 (453)
19 PLN03007 UDP-glucosyltransfera 99.9 6.3E-23 1.4E-27 155.6 14.5 123 3-128 5-143 (482)
20 PLN02167 UDP-glycosyltransfera 99.9 6E-23 1.3E-27 155.4 14.0 128 1-128 1-139 (475)
21 PLN02208 glycosyltransferase f 99.9 6.2E-23 1.3E-27 154.0 13.4 117 1-128 1-127 (442)
22 cd03784 GT1_Gtf_like This fami 99.8 9.7E-18 2.1E-22 124.2 10.4 113 4-128 1-125 (401)
23 TIGR01426 MGT glycosyltransfer 99.7 2.3E-16 5E-21 116.9 11.1 108 9-128 1-113 (392)
24 PF03033 Glyco_transf_28: Glyc 99.4 5.8E-14 1.3E-18 90.1 1.2 112 6-128 1-121 (139)
25 KOG1192 UDP-glucuronosyl and U 99.4 1E-12 2.2E-17 100.0 6.7 124 3-127 5-134 (496)
26 COG1819 Glycosyl transferases, 98.9 4.2E-09 9.1E-14 78.9 7.3 56 3-67 1-56 (406)
27 PF00201 UDPGT: UDP-glucoronos 98.9 4.3E-10 9.4E-15 85.8 0.4 113 5-128 2-140 (500)
28 PHA03392 egt ecdysteroid UDP-g 98.7 1.8E-07 4E-12 72.0 9.4 116 4-127 21-156 (507)
29 PF13528 Glyco_trans_1_3: Glyc 98.6 8.3E-07 1.8E-11 64.0 11.7 108 4-127 1-113 (318)
30 TIGR00661 MJ1255 conserved hyp 98.6 1.5E-06 3.2E-11 63.2 10.7 109 6-128 2-113 (321)
31 PRK12446 undecaprenyldiphospho 98.2 3.7E-05 8E-10 56.8 11.1 55 5-67 3-58 (352)
32 TIGR01133 murG undecaprenyldip 97.7 0.0012 2.5E-08 48.0 11.3 37 5-41 2-38 (348)
33 PRK00726 murG undecaprenyldiph 97.7 0.0013 2.8E-08 48.2 11.4 38 4-41 2-39 (357)
34 COG0707 MurG UDP-N-acetylgluco 97.6 0.0016 3.5E-08 48.4 11.3 107 5-126 2-111 (357)
35 cd03785 GT1_MurG MurG is an N- 97.6 0.003 6.5E-08 45.9 11.7 37 5-41 1-37 (350)
36 TIGR03590 PseG pseudaminic aci 97.3 0.0032 7E-08 45.1 8.9 32 12-43 12-43 (279)
37 TIGR00215 lpxB lipid-A-disacch 97.3 0.0041 9E-08 46.5 9.7 37 4-41 6-42 (385)
38 COG4671 Predicted glycosyl tra 97.2 0.003 6.5E-08 46.6 7.6 57 3-67 9-69 (400)
39 cd03818 GT1_ExpC_like This fam 97.1 0.017 3.8E-07 42.9 11.8 34 5-43 1-36 (396)
40 PRK00025 lpxB lipid-A-disaccha 96.4 0.048 1E-06 40.2 9.5 37 4-41 2-38 (380)
41 cd03816 GT1_ALG1_like This fam 96.4 0.11 2.4E-06 39.2 11.3 39 3-41 3-41 (415)
42 PRK02261 methylaspartate mutas 95.4 0.076 1.6E-06 34.2 5.7 49 1-49 1-49 (137)
43 cd03800 GT1_Sucrose_synthase T 95.0 0.1 2.3E-06 38.2 6.3 29 14-42 21-49 (398)
44 PRK13609 diacylglycerol glucos 94.4 0.081 1.8E-06 39.1 4.6 39 2-40 3-42 (380)
45 cd03823 GT1_ExpE7_like This fa 94.4 1.3 2.8E-05 31.5 11.0 30 14-43 15-44 (359)
46 COG3980 spsG Spore coat polysa 94.0 0.14 3.1E-06 36.9 4.8 41 4-44 1-45 (318)
47 PF13579 Glyco_trans_4_4: Glyc 93.8 0.13 2.7E-06 32.5 4.1 40 20-66 7-46 (160)
48 PF12000 Glyco_trans_4_3: Gkyc 93.7 0.91 2E-05 30.4 8.1 77 29-118 1-77 (171)
49 cd04962 GT1_like_5 This family 93.2 0.15 3.2E-06 37.1 4.0 37 5-41 2-39 (371)
50 cd03814 GT1_like_2 This family 93.0 0.22 4.9E-06 35.6 4.8 29 14-42 14-42 (364)
51 cd02067 B12-binding B12 bindin 93.0 0.32 6.9E-06 30.1 4.9 44 5-48 1-44 (119)
52 cd03808 GT1_cap1E_like This fa 92.6 0.22 4.8E-06 35.2 4.2 40 5-44 1-40 (359)
53 PF13439 Glyco_transf_4: Glyco 92.6 0.19 4E-06 32.2 3.5 29 15-43 13-41 (177)
54 PF13477 Glyco_trans_4_2: Glyc 92.1 0.61 1.3E-05 29.2 5.4 51 5-66 1-51 (139)
55 cd03817 GT1_UGDG_like This fam 91.9 0.39 8.4E-06 34.3 4.7 31 12-42 12-42 (374)
56 PLN02871 UDP-sulfoquinovose:DA 91.8 0.49 1.1E-05 36.2 5.4 40 2-41 57-101 (465)
57 COG2874 FlaH Predicted ATPases 91.4 2.4 5.2E-05 29.7 7.9 36 14-49 39-74 (235)
58 cd04951 GT1_WbdM_like This fam 91.2 0.33 7.1E-06 34.9 3.8 35 6-40 2-38 (360)
59 PRK01175 phosphoribosylformylg 90.6 4.9 0.00011 28.8 9.4 59 1-70 1-59 (261)
60 cd03794 GT1_wbuB_like This fam 90.5 0.47 1E-05 33.9 4.1 30 14-43 14-43 (394)
61 PRK10307 putative glycosyl tra 90.4 0.68 1.5E-05 34.6 5.0 37 5-41 2-42 (412)
62 cd03825 GT1_wcfI_like This fam 89.3 0.89 1.9E-05 32.7 4.7 38 5-42 2-41 (365)
63 cd03805 GT1_ALG2_like This fam 89.2 1 2.2E-05 33.1 5.0 37 5-41 2-40 (392)
64 cd03821 GT1_Bme6_like This fam 89.0 0.91 2E-05 32.3 4.6 30 13-42 13-42 (375)
65 PLN02846 digalactosyldiacylgly 88.8 0.92 2E-05 35.1 4.6 40 2-41 3-47 (462)
66 cd02070 corrinoid_protein_B12- 88.6 1.8 3.9E-05 29.5 5.6 47 3-49 82-128 (201)
67 cd03802 GT1_AviGT4_like This f 87.9 1.5 3.3E-05 31.2 5.1 38 5-42 2-47 (335)
68 TIGR02370 pyl_corrinoid methyl 87.7 2.1 4.5E-05 29.2 5.4 47 3-49 84-130 (197)
69 COG1484 DnaC DNA replication p 87.5 2 4.3E-05 30.5 5.4 47 4-50 106-152 (254)
70 cd03811 GT1_WabH_like This fam 87.5 1.4 3E-05 30.9 4.7 38 6-43 2-41 (353)
71 TIGR02468 sucrsPsyn_pln sucros 87.2 13 0.00029 31.9 10.6 28 15-42 196-225 (1050)
72 PF02310 B12-binding: B12 bind 86.6 3.8 8.3E-05 25.0 5.8 42 5-46 2-43 (121)
73 cd04955 GT1_like_6 This family 86.2 2.5 5.3E-05 30.4 5.4 28 15-42 16-43 (363)
74 PF02441 Flavoprotein: Flavopr 86.1 2.1 4.6E-05 26.9 4.5 43 5-48 2-44 (129)
75 cd03795 GT1_like_4 This family 85.4 2.1 4.5E-05 30.7 4.7 30 13-42 13-42 (357)
76 COG2185 Sbm Methylmalonyl-CoA 85.0 2.3 5E-05 27.6 4.2 40 1-40 10-49 (143)
77 cd01635 Glycosyltransferase_GT 84.4 2.2 4.8E-05 28.2 4.3 26 13-38 12-37 (229)
78 PRK08305 spoVFB dipicolinate s 84.3 2.4 5.1E-05 29.1 4.3 41 3-44 5-46 (196)
79 PLN00142 sucrose synthase 84.3 13 0.00028 31.1 9.0 100 22-128 319-431 (815)
80 cd02069 methionine_synthase_B1 84.2 4 8.6E-05 28.2 5.4 47 3-49 88-134 (213)
81 cd02071 MM_CoA_mut_B12_BD meth 83.6 4.3 9.3E-05 25.3 5.0 42 5-46 1-42 (122)
82 cd03820 GT1_amsD_like This fam 83.6 3 6.5E-05 29.2 4.8 30 14-43 13-42 (348)
83 cd03801 GT1_YqgM_like This fam 83.6 2.9 6.4E-05 29.4 4.8 30 14-43 14-43 (374)
84 PRK00654 glgA glycogen synthas 82.9 3 6.4E-05 32.0 4.8 36 5-40 2-43 (466)
85 COG1066 Sms Predicted ATP-depe 82.0 20 0.00044 27.7 8.7 42 6-48 96-137 (456)
86 PF04244 DPRP: Deoxyribodipyri 81.8 2.6 5.6E-05 29.5 3.8 26 16-41 47-72 (224)
87 PF04127 DFP: DNA / pantothena 81.3 2.1 4.7E-05 28.9 3.2 21 21-41 33-53 (185)
88 TIGR03449 mycothiol_MshA UDP-N 81.1 2.1 4.5E-05 31.8 3.4 29 13-41 19-47 (405)
89 COG4081 Uncharacterized protei 80.9 4.1 8.9E-05 26.1 4.1 42 5-46 5-47 (148)
90 PF08660 Alg14: Oligosaccharid 80.9 13 0.00028 24.7 6.8 31 12-42 6-37 (170)
91 TIGR02470 sucr_synth sucrose s 80.8 32 0.0007 28.8 12.3 107 14-127 279-407 (784)
92 cd03796 GT1_PIG-A_like This fa 80.0 3.9 8.5E-05 30.4 4.5 27 15-41 15-41 (398)
93 TIGR02655 circ_KaiC circadian 79.8 27 0.00058 27.2 9.1 45 5-49 265-309 (484)
94 cd03806 GT1_ALG11_like This fa 79.5 25 0.00053 26.7 8.7 25 19-43 19-45 (419)
95 PRK14099 glycogen synthase; Pr 78.7 5.7 0.00012 30.9 5.1 40 1-40 1-46 (485)
96 cd03819 GT1_WavL_like This fam 77.8 6.3 0.00014 28.3 4.9 29 14-42 10-38 (355)
97 cd00984 DnaB_C DnaB helicase C 77.5 14 0.00031 25.4 6.5 43 6-48 16-59 (242)
98 PRK09620 hypothetical protein; 76.2 6.4 0.00014 27.5 4.4 40 1-40 1-52 (229)
99 cd03791 GT1_Glycogen_synthase_ 76.0 2.9 6.3E-05 31.9 2.9 23 18-40 20-42 (476)
100 cd03799 GT1_amsK_like This is 74.9 9.4 0.0002 27.2 5.2 37 6-42 2-39 (355)
101 PF01591 6PF2K: 6-phosphofruct 74.7 26 0.00057 24.5 8.6 44 5-48 14-57 (222)
102 PRK05986 cob(I)alamin adenolsy 74.3 25 0.00054 24.0 11.6 39 1-39 20-58 (191)
103 PF08323 Glyco_transf_5: Starc 74.2 3.6 7.8E-05 28.9 2.8 24 18-41 20-43 (245)
104 PF02951 GSH-S_N: Prokaryotic 74.1 10 0.00022 23.8 4.5 25 18-42 18-42 (119)
105 PF09314 DUF1972: Domain of un 74.0 5.7 0.00012 27.0 3.6 29 15-43 17-46 (185)
106 PF00070 Pyr_redox: Pyridine n 73.7 6.8 0.00015 22.2 3.4 24 19-42 10-33 (80)
107 cd03822 GT1_ecORF704_like This 73.5 7.8 0.00017 27.6 4.5 37 6-42 2-41 (366)
108 cd02065 B12-binding_like B12 b 73.3 13 0.00029 22.6 5.0 43 6-48 2-44 (125)
109 PRK09444 pntB pyridine nucleot 72.7 9.1 0.0002 29.7 4.7 36 4-41 307-347 (462)
110 COG0162 TyrS Tyrosyl-tRNA synt 71.6 5.7 0.00012 30.3 3.4 26 15-41 49-74 (401)
111 PF12146 Hydrolase_4: Putative 71.5 12 0.00027 21.4 4.2 33 5-37 17-49 (79)
112 cd03812 GT1_CapH_like This fam 71.1 6.3 0.00014 28.3 3.5 32 12-43 10-41 (358)
113 TIGR03600 phage_DnaB phage rep 70.8 27 0.00058 26.5 7.0 43 6-48 197-240 (421)
114 PRK06249 2-dehydropantoate 2-r 70.6 8.2 0.00018 28.0 4.0 36 1-41 3-38 (313)
115 TIGR02095 glgA glycogen/starch 70.6 4.7 0.0001 30.9 2.9 37 5-41 2-44 (473)
116 cd03798 GT1_wlbH_like This fam 70.2 9.8 0.00021 26.8 4.3 32 13-44 13-44 (377)
117 cd03807 GT1_WbnK_like This fam 69.8 12 0.00025 26.5 4.6 32 11-42 9-40 (365)
118 PF03720 UDPG_MGDP_dh_C: UDP-g 69.0 8.4 0.00018 23.3 3.3 28 18-45 17-44 (106)
119 PF13450 NAD_binding_8: NAD(P) 68.5 8.6 0.00019 21.3 3.0 22 21-42 9-30 (68)
120 COG1703 ArgK Putative periplas 68.4 16 0.00035 26.9 5.0 42 3-44 50-92 (323)
121 TIGR02472 sucr_P_syn_N sucrose 68.1 6.5 0.00014 29.9 3.2 25 16-40 28-54 (439)
122 PF02233 PNTB: NAD(P) transhyd 68.1 10 0.00022 29.5 4.1 37 4-42 308-349 (463)
123 PF09001 DUF1890: Domain of un 67.7 7.4 0.00016 25.1 2.8 33 17-49 13-45 (139)
124 PRK07313 phosphopantothenoylcy 67.6 12 0.00026 25.2 4.1 41 5-46 3-43 (182)
125 PF02142 MGS: MGS-like domain 67.6 8.7 0.00019 22.7 3.1 27 20-48 2-28 (95)
126 COG0467 RAD55 RecA-superfamily 66.8 26 0.00056 24.6 5.8 45 5-49 25-69 (260)
127 TIGR02852 spore_dpaB dipicolin 66.1 11 0.00025 25.6 3.7 39 5-43 2-40 (187)
128 TIGR02113 coaC_strep phosphopa 65.6 12 0.00026 25.1 3.7 35 12-46 8-42 (177)
129 KOG1509 Predicted nucleic acid 65.1 32 0.0007 23.7 5.6 74 29-113 7-83 (209)
130 PF00448 SRP54: SRP54-type pro 65.0 17 0.00038 24.6 4.5 38 6-43 4-41 (196)
131 KOG2585 Uncharacterized conser 65.0 16 0.00035 28.2 4.6 36 2-40 265-302 (453)
132 TIGR00234 tyrS tyrosyl-tRNA sy 64.8 8 0.00017 29.2 3.0 27 14-41 46-72 (377)
133 COG0541 Ffh Signal recognition 64.3 56 0.0012 25.5 7.3 40 5-44 102-141 (451)
134 TIGR02699 archaeo_AfpA archaeo 63.6 16 0.00034 24.6 4.0 35 10-44 5-41 (174)
135 PRK06732 phosphopantothenate-- 63.4 11 0.00023 26.3 3.3 19 21-39 30-48 (229)
136 TIGR00421 ubiX_pad polyprenyl 63.2 14 0.00031 24.8 3.8 31 15-46 11-41 (181)
137 PRK14106 murD UDP-N-acetylmura 63.1 18 0.0004 27.5 4.8 35 2-41 4-38 (450)
138 PRK08939 primosomal protein Dn 62.5 25 0.00054 25.7 5.2 45 5-49 158-202 (306)
139 TIGR00521 coaBC_dfp phosphopan 62.2 24 0.00052 26.9 5.1 44 2-46 2-45 (390)
140 PF01380 SIS: SIS domain SIS d 62.1 23 0.00049 21.6 4.4 36 8-43 57-92 (131)
141 COG2910 Putative NADH-flavin r 61.8 10 0.00022 26.1 2.8 34 5-42 2-35 (211)
142 cd02034 CooC The accessory pro 61.7 34 0.00073 21.1 5.0 37 5-41 1-37 (116)
143 KOG4589 Cell division protein 61.5 9.2 0.0002 26.4 2.5 22 93-117 125-146 (232)
144 PF03853 YjeF_N: YjeF-related 60.9 13 0.00029 24.5 3.3 36 3-39 25-60 (169)
145 PRK05595 replicative DNA helic 60.9 37 0.0008 26.1 6.1 43 6-48 204-247 (444)
146 PF01695 IstB_IS21: IstB-like 60.7 25 0.00055 23.4 4.6 46 4-49 48-93 (178)
147 PRK08760 replicative DNA helic 60.2 45 0.00097 26.1 6.4 43 6-48 232-275 (476)
148 TIGR00665 DnaB replicative DNA 60.1 56 0.0012 24.9 6.9 43 6-48 198-241 (434)
149 PRK13982 bifunctional SbtC-lik 59.6 11 0.00025 29.4 3.1 38 4-41 257-306 (475)
150 PRK05579 bifunctional phosphop 59.5 27 0.00059 26.6 5.1 44 2-46 5-48 (399)
151 cd00861 ProRS_anticodon_short 59.5 27 0.00059 20.0 4.2 35 5-39 3-39 (94)
152 PF02558 ApbA: Ketopantoate re 59.4 15 0.00033 23.2 3.3 25 22-46 12-36 (151)
153 PRK05920 aromatic acid decarbo 59.3 19 0.00042 24.8 3.9 42 4-46 4-45 (204)
154 PRK06179 short chain dehydroge 59.3 29 0.00063 24.1 5.0 37 1-40 1-37 (270)
155 PF08897 DUF1841: Domain of un 59.2 7.4 0.00016 25.1 1.7 18 12-29 57-74 (137)
156 cd03115 SRP The signal recogni 59.1 37 0.0008 22.0 5.2 38 6-43 3-40 (173)
157 PF01975 SurE: Survival protei 58.8 12 0.00026 25.6 2.8 27 19-45 15-41 (196)
158 PRK08506 replicative DNA helic 58.8 55 0.0012 25.5 6.7 43 6-48 195-237 (472)
159 TIGR02700 flavo_MJ0208 archaeo 58.7 23 0.00049 24.8 4.3 37 10-46 5-44 (234)
160 TIGR00064 ftsY signal recognit 58.4 30 0.00066 24.8 5.0 38 5-42 74-111 (272)
161 COG4088 Predicted nucleotide k 57.5 17 0.00038 25.6 3.4 34 6-39 4-37 (261)
162 PRK06719 precorrin-2 dehydroge 57.2 23 0.0005 23.1 3.9 32 3-39 13-44 (157)
163 TIGR02622 CDP_4_6_dhtase CDP-g 57.1 28 0.00061 25.4 4.8 33 2-38 3-35 (349)
164 PRK07236 hypothetical protein; 56.8 16 0.00036 27.1 3.5 34 1-39 4-37 (386)
165 KOG0780 Signal recognition par 56.8 45 0.00098 25.8 5.6 40 5-44 103-142 (483)
166 TIGR00640 acid_CoA_mut_C methy 56.7 28 0.0006 22.2 4.1 37 3-39 53-90 (132)
167 TIGR00745 apbA_panE 2-dehydrop 56.2 14 0.00029 26.2 2.9 26 22-47 5-30 (293)
168 COG1255 Uncharacterized protei 56.1 16 0.00035 23.0 2.8 20 20-39 25-44 (129)
169 TIGR01007 eps_fam capsular exo 56.0 43 0.00093 22.4 5.2 38 3-40 16-55 (204)
170 PRK00771 signal recognition pa 55.9 39 0.00084 26.2 5.4 40 5-44 97-136 (437)
171 PTZ00445 p36-lilke protein; Pr 55.8 17 0.00037 25.4 3.1 28 15-42 74-102 (219)
172 PRK05973 replicative DNA helic 55.7 43 0.00094 23.6 5.3 44 6-49 67-110 (237)
173 smart00851 MGS MGS-like domain 55.7 24 0.00051 20.5 3.4 27 20-48 2-28 (90)
174 TIGR01425 SRP54_euk signal rec 55.6 29 0.00063 26.8 4.7 40 5-44 102-141 (429)
175 PRK06222 ferredoxin-NADP(+) re 55.2 24 0.00051 25.3 4.0 37 5-43 100-136 (281)
176 PRK06904 replicative DNA helic 55.0 81 0.0018 24.6 7.1 43 6-48 224-267 (472)
177 PRK06849 hypothetical protein; 54.7 40 0.00087 25.2 5.3 36 3-42 4-39 (389)
178 cd01124 KaiC KaiC is a circadi 54.7 57 0.0012 21.2 5.6 43 6-48 2-44 (187)
179 KOG1053 Glutamate-gated NMDA-t 54.7 6.7 0.00015 33.1 1.2 56 59-117 688-743 (1258)
180 PRK01021 lpxB lipid-A-disaccha 54.3 1.2E+02 0.0026 24.8 9.1 81 31-115 226-319 (608)
181 PF13460 NAD_binding_10: NADH( 54.3 18 0.00038 23.6 3.0 28 13-42 6-33 (183)
182 PRK09361 radB DNA repair and r 54.2 47 0.001 22.6 5.2 35 6-40 26-60 (225)
183 PRK13604 luxD acyl transferase 53.9 46 0.001 24.5 5.3 32 6-37 39-70 (307)
184 PRK06321 replicative DNA helic 53.9 90 0.0019 24.4 7.1 43 6-48 229-272 (472)
185 COG1282 PntB NAD/NADP transhyd 53.8 29 0.00063 26.4 4.2 35 5-41 310-349 (463)
186 PLN02275 transferase, transfer 53.6 89 0.0019 23.1 12.8 57 5-67 6-63 (371)
187 PRK06835 DNA replication prote 53.3 45 0.00098 24.7 5.2 45 4-48 184-228 (329)
188 PF13507 GATase_5: CobB/CobQ-l 53.1 29 0.00062 24.9 4.1 58 3-72 1-59 (259)
189 COG0300 DltE Short-chain dehyd 53.0 17 0.00037 26.1 2.9 20 21-40 20-39 (265)
190 KOG1838 Alpha/beta hydrolase [ 52.9 46 0.00099 25.6 5.2 38 4-41 126-164 (409)
191 KOG3062 RNA polymerase II elon 52.6 41 0.00089 24.0 4.6 29 5-33 3-31 (281)
192 cd02067 B12-binding B12 bindin 52.5 44 0.00095 20.3 4.5 35 3-37 50-85 (119)
193 PRK05749 3-deoxy-D-manno-octul 52.5 98 0.0021 23.3 8.3 23 11-33 57-79 (425)
194 PRK06935 2-deoxy-D-gluconate 3 52.4 75 0.0016 21.9 7.9 33 5-40 16-48 (258)
195 PRK06180 short chain dehydroge 52.3 44 0.00095 23.4 5.0 33 5-40 5-37 (277)
196 PRK10964 ADP-heptose:LPS hepto 52.2 37 0.00081 24.6 4.7 41 5-45 2-44 (322)
197 PRK12829 short chain dehydroge 52.2 42 0.0009 23.1 4.8 35 2-40 10-44 (264)
198 cd00395 Tyr_Trp_RS_core cataly 52.1 16 0.00035 26.2 2.7 24 15-39 16-39 (273)
199 TIGR02193 heptsyl_trn_I lipopo 52.1 33 0.00071 24.7 4.4 43 5-47 1-45 (319)
200 cd00561 CobA_CobO_BtuR ATP:cor 52.0 67 0.0015 21.2 12.0 34 4-37 3-36 (159)
201 PRK13354 tyrosyl-tRNA syntheta 51.8 22 0.00048 27.2 3.5 25 15-40 50-74 (410)
202 PRK10916 ADP-heptose:LPS hepto 51.8 41 0.00089 24.7 4.9 42 5-46 2-45 (348)
203 PF07881 Fucose_iso_N1: L-fuco 51.2 51 0.0011 22.1 4.7 30 92-121 33-63 (171)
204 TIGR00288 conserved hypothetic 51.1 71 0.0015 21.2 5.4 39 5-48 108-147 (160)
205 COG2085 Predicted dinucleotide 51.1 21 0.00046 24.8 3.0 29 13-43 8-36 (211)
206 PF03796 DnaB_C: DnaB-like hel 50.9 69 0.0015 22.4 5.7 43 6-48 22-65 (259)
207 PLN02891 IMP cyclohydrolase 50.6 30 0.00064 27.6 4.0 41 20-71 35-77 (547)
208 PRK10867 signal recognition pa 50.5 45 0.00098 25.8 5.0 41 5-45 102-143 (433)
209 COG1252 Ndh NADH dehydrogenase 50.4 19 0.00041 27.6 3.0 39 1-42 1-39 (405)
210 PRK12429 3-hydroxybutyrate deh 50.3 43 0.00092 22.9 4.6 35 2-40 3-37 (258)
211 PF01316 Arg_repressor: Argini 50.3 11 0.00024 21.3 1.3 27 20-46 22-48 (70)
212 TIGR01675 plant-AP plant acid 50.2 25 0.00054 24.8 3.3 26 17-42 122-147 (229)
213 PF01210 NAD_Gly3P_dh_N: NAD-d 50.2 17 0.00037 23.6 2.4 20 22-41 13-32 (157)
214 PRK08226 short chain dehydroge 50.2 82 0.0018 21.7 7.5 21 21-41 20-40 (263)
215 PRK13886 conjugal transfer pro 50.0 57 0.0012 23.1 5.1 41 1-41 1-41 (241)
216 PLN03050 pyridoxine (pyridoxam 50.0 21 0.00046 25.3 3.0 33 4-39 61-95 (246)
217 cd01421 IMPCH Inosine monophos 50.0 42 0.00092 22.9 4.3 28 19-48 12-39 (187)
218 TIGR02114 coaB_strep phosphopa 49.6 21 0.00046 24.8 2.9 18 21-38 29-46 (227)
219 PF02572 CobA_CobO_BtuR: ATP:c 49.6 77 0.0017 21.2 8.0 98 4-117 4-106 (172)
220 cd02032 Bchl_like This family 49.5 48 0.0011 23.3 4.8 32 6-37 3-34 (267)
221 PRK07231 fabG 3-ketoacyl-(acyl 49.5 51 0.0011 22.4 4.8 34 4-41 6-39 (251)
222 PF14626 RNase_Zc3h12a_2: Zc3h 49.5 26 0.00056 22.1 2.9 29 18-46 10-38 (122)
223 PRK02006 murD UDP-N-acetylmura 49.3 31 0.00067 26.8 4.0 32 3-39 7-38 (498)
224 PF01555 N6_N4_Mtase: DNA meth 48.8 31 0.00068 23.1 3.7 30 94-128 182-213 (231)
225 PRK06067 flagellar accessory p 48.8 86 0.0019 21.5 5.9 44 5-48 27-70 (234)
226 KOG1014 17 beta-hydroxysteroid 48.7 22 0.00047 26.3 2.9 18 22-39 64-81 (312)
227 cd03809 GT1_mtfB_like This fam 48.7 20 0.00044 25.5 2.8 28 15-42 16-43 (365)
228 PF02780 Transketolase_C: Tran 48.5 59 0.0013 19.9 4.6 35 4-40 10-44 (124)
229 cd03789 GT1_LPS_heptosyltransf 48.4 43 0.00094 23.6 4.4 42 5-46 1-44 (279)
230 cd01122 GP4d_helicase GP4d_hel 48.4 64 0.0014 22.6 5.3 42 5-46 32-74 (271)
231 PRK05802 hypothetical protein; 48.1 33 0.00071 25.2 3.8 37 5-43 174-210 (320)
232 PF04007 DUF354: Protein of un 48.0 1.1E+02 0.0025 22.7 10.4 44 15-66 11-55 (335)
233 PRK11064 wecC UDP-N-acetyl-D-m 48.0 39 0.00086 25.8 4.4 35 1-40 1-35 (415)
234 PRK08181 transposase; Validate 47.6 57 0.0012 23.5 4.9 43 4-46 107-149 (269)
235 PRK06841 short chain dehydroge 47.4 89 0.0019 21.3 7.8 21 21-41 29-49 (255)
236 PHA03366 FGAM-synthase; Provis 47.4 1.8E+02 0.0039 26.1 8.5 60 3-75 1028-1088(1304)
237 PRK08006 replicative DNA helic 47.4 1.4E+02 0.003 23.4 7.6 43 6-48 227-270 (471)
238 cd00805 TyrRS_core catalytic c 47.4 28 0.0006 24.9 3.3 27 14-41 16-42 (269)
239 cd06188 NADH_quinone_reductase 47.3 66 0.0014 22.9 5.2 36 5-42 152-190 (283)
240 PTZ00318 NADH dehydrogenase-li 47.3 26 0.00056 26.6 3.3 37 1-42 8-44 (424)
241 cd01983 Fer4_NifH The Fer4_Nif 47.3 50 0.0011 18.4 4.9 33 6-38 2-34 (99)
242 cd05008 SIS_GlmS_GlmD_1 SIS (S 47.2 56 0.0012 19.8 4.4 33 11-43 53-85 (126)
243 PRK06029 3-octaprenyl-4-hydrox 47.0 51 0.0011 22.3 4.4 43 5-48 3-46 (185)
244 COG0665 DadA Glycine/D-amino a 46.9 33 0.00072 25.2 3.8 35 2-41 3-37 (387)
245 TIGR03087 stp1 sugar transfera 46.9 20 0.00044 26.6 2.7 32 9-41 8-40 (397)
246 PRK06522 2-dehydropantoate 2-r 46.7 43 0.00094 23.8 4.3 30 5-39 2-31 (304)
247 PRK06526 transposase; Provisio 46.6 32 0.00069 24.5 3.5 44 3-46 98-141 (254)
248 PRK12827 short chain dehydroge 46.6 52 0.0011 22.3 4.5 32 3-38 6-37 (249)
249 PRK12377 putative replication 46.5 63 0.0014 22.9 4.9 44 5-48 103-146 (248)
250 PF02374 ArsA_ATPase: Anion-tr 46.5 50 0.0011 24.1 4.6 39 5-43 2-41 (305)
251 cd05014 SIS_Kpsf KpsF-like pro 46.0 60 0.0013 19.8 4.4 35 9-43 52-86 (128)
252 PRK12826 3-ketoacyl-(acyl-carr 45.8 74 0.0016 21.5 5.2 33 4-40 7-39 (251)
253 COG0543 UbiB 2-polyprenylpheno 45.7 37 0.0008 24.0 3.7 37 6-44 110-148 (252)
254 PRK00683 murD UDP-N-acetylmura 45.6 33 0.00071 26.0 3.6 33 1-38 1-33 (418)
255 TIGR03499 FlhF flagellar biosy 45.4 65 0.0014 23.2 5.0 39 5-43 196-236 (282)
256 PLN02240 UDP-glucose 4-epimera 45.1 63 0.0014 23.4 5.0 33 2-38 4-36 (352)
257 PRK09072 short chain dehydroge 44.9 60 0.0013 22.4 4.7 33 4-40 6-38 (263)
258 PF01266 DAO: FAD dependent ox 44.9 27 0.00059 25.0 3.0 20 21-40 12-31 (358)
259 cd00806 TrpRS_core catalytic c 44.8 30 0.00064 25.0 3.1 28 14-41 14-41 (280)
260 PRK14974 cell division protein 44.7 64 0.0014 24.1 4.9 38 5-42 142-179 (336)
261 TIGR01281 DPOR_bchL light-inde 44.6 66 0.0014 22.6 4.9 33 5-37 2-34 (268)
262 COG0569 TrkA K+ transport syst 44.4 25 0.00055 24.4 2.7 22 21-42 13-34 (225)
263 PRK14569 D-alanyl-alanine synt 44.4 86 0.0019 22.6 5.5 39 1-40 1-44 (296)
264 TIGR00959 ffh signal recogniti 44.4 74 0.0016 24.6 5.3 41 5-45 101-142 (428)
265 PF08026 Antimicrobial_5: Bee 44.3 2.4 5.3E-05 20.5 -1.7 15 10-24 17-31 (39)
266 cd01075 NAD_bind_Leu_Phe_Val_D 44.2 46 0.00099 22.6 3.8 31 3-38 28-58 (200)
267 PRK14573 bifunctional D-alanyl 44.1 38 0.00082 28.2 4.0 32 3-38 4-35 (809)
268 PLN02316 synthase/transferase 44.0 29 0.00063 30.0 3.3 40 3-42 587-632 (1036)
269 PRK06079 enoyl-(acyl carrier p 44.0 1.1E+02 0.0023 21.2 9.4 18 21-38 23-40 (252)
270 PF12695 Abhydrolase_5: Alpha/ 43.8 74 0.0016 19.3 4.7 36 6-42 2-37 (145)
271 PF05762 VWA_CoxE: VWA domain 43.6 84 0.0018 21.7 5.2 36 5-40 152-188 (222)
272 PRK06128 oxidoreductase; Provi 43.5 1.2E+02 0.0026 21.6 6.9 19 21-39 69-87 (300)
273 PF08384 NPP: Pro-opiomelanoco 43.4 6.9 0.00015 20.2 -0.2 10 11-20 35-44 (45)
274 PF00975 Thioesterase: Thioest 43.3 29 0.00063 23.4 2.8 37 5-42 2-38 (229)
275 cd01452 VWA_26S_proteasome_sub 43.3 92 0.002 21.1 5.2 33 6-38 111-143 (187)
276 COG1090 Predicted nucleoside-d 43.2 30 0.00065 25.3 2.9 21 22-42 13-33 (297)
277 PF00175 NAD_binding_1: Oxidor 43.2 53 0.0011 19.2 3.7 27 17-43 8-36 (109)
278 cd03792 GT1_Trehalose_phosphor 43.1 51 0.0011 24.1 4.3 29 13-41 11-39 (372)
279 COG3046 Uncharacterized protei 43.1 37 0.00079 26.3 3.4 26 16-41 51-76 (505)
280 PRK07577 short chain dehydroge 43.0 58 0.0013 21.9 4.3 35 1-39 1-35 (234)
281 PLN00016 RNA-binding protein; 42.8 29 0.00062 25.8 2.9 36 4-41 53-90 (378)
282 PF12500 TRSP: TRSP domain C t 42.8 37 0.0008 22.4 3.1 33 5-39 59-91 (155)
283 PRK08993 2-deoxy-D-gluconate 3 42.8 1.1E+02 0.0024 21.0 8.2 19 21-39 24-42 (253)
284 PLN02939 transferase, transfer 42.8 70 0.0015 27.6 5.3 39 3-41 481-525 (977)
285 PRK07806 short chain dehydroge 42.7 74 0.0016 21.6 4.8 19 21-39 20-38 (248)
286 cd02069 methionine_synthase_B1 42.7 61 0.0013 22.4 4.3 39 3-41 139-177 (213)
287 PRK04148 hypothetical protein; 42.6 33 0.00072 22.0 2.8 32 5-42 19-50 (134)
288 COG1233 Phytoene dehydrogenase 42.4 51 0.0011 25.7 4.3 33 1-38 1-33 (487)
289 PRK08213 gluconate 5-dehydroge 42.3 67 0.0014 22.1 4.6 33 4-40 13-45 (259)
290 CHL00072 chlL photochlorophyll 42.2 74 0.0016 23.0 4.9 32 6-37 3-34 (290)
291 PF02702 KdpD: Osmosensitive K 42.0 75 0.0016 22.1 4.5 39 4-42 6-44 (211)
292 PRK11889 flhF flagellar biosyn 42.0 89 0.0019 24.3 5.3 39 5-43 243-281 (436)
293 PRK07952 DNA replication prote 41.8 81 0.0018 22.3 4.9 43 5-47 101-143 (244)
294 PRK06077 fabG 3-ketoacyl-(acyl 41.8 87 0.0019 21.3 5.1 32 4-39 7-38 (252)
295 cd00860 ThrRS_anticodon ThrRS 41.7 65 0.0014 18.1 4.4 35 5-40 3-37 (91)
296 cd01125 repA Hexameric Replica 41.7 72 0.0016 22.0 4.7 42 7-48 5-58 (239)
297 KOG0223 Aquaporin (major intri 41.7 15 0.00032 26.0 1.2 17 14-30 67-83 (238)
298 TIGR02137 HSK-PSP phosphoserin 41.6 77 0.0017 21.6 4.7 37 89-128 69-105 (203)
299 PF09334 tRNA-synt_1g: tRNA sy 41.5 32 0.0007 26.1 3.0 29 15-43 17-48 (391)
300 PRK10422 lipopolysaccharide co 41.5 59 0.0013 23.9 4.4 43 4-46 6-50 (352)
301 PF03767 Acid_phosphat_B: HAD 41.5 22 0.00048 24.8 2.0 24 19-42 119-142 (229)
302 TIGR01082 murC UDP-N-acetylmur 41.3 36 0.00079 26.0 3.3 30 5-38 1-30 (448)
303 PRK11914 diacylglycerol kinase 41.1 84 0.0018 22.7 5.0 37 5-41 12-49 (306)
304 TIGR03877 thermo_KaiC_1 KaiC d 40.9 1.1E+02 0.0024 21.2 5.5 44 5-48 23-66 (237)
305 PF03205 MobB: Molybdopterin g 40.8 90 0.0019 19.9 4.6 33 5-37 2-34 (140)
306 PRK14098 glycogen synthase; Pr 40.7 35 0.00075 26.6 3.2 37 4-40 6-48 (489)
307 PRK13608 diacylglycerol glucos 40.7 68 0.0015 24.0 4.7 35 3-37 5-43 (391)
308 PRK08840 replicative DNA helic 40.4 1.8E+02 0.0039 22.8 7.5 43 6-48 220-263 (464)
309 TIGR03127 RuMP_HxlB 6-phospho 40.4 72 0.0016 20.9 4.3 35 9-43 77-111 (179)
310 cd00550 ArsA_ATPase Oxyanion-t 40.4 69 0.0015 22.6 4.4 37 6-42 3-39 (254)
311 PRK06914 short chain dehydroge 40.3 97 0.0021 21.6 5.2 36 1-40 1-36 (280)
312 TIGR00176 mobB molybdopterin-g 40.3 93 0.002 20.2 4.7 34 6-39 2-35 (155)
313 PF14336 DUF4392: Domain of un 40.2 49 0.0011 24.1 3.7 45 4-49 41-94 (291)
314 PF07755 DUF1611: Protein of u 40.2 79 0.0017 23.3 4.7 39 4-42 113-152 (301)
315 cd05013 SIS_RpiR RpiR-like pro 40.2 80 0.0017 19.1 4.3 33 11-43 67-99 (139)
316 PRK06182 short chain dehydroge 40.1 1E+02 0.0022 21.4 5.3 35 1-39 1-35 (273)
317 TIGR01680 Veg_Stor_Prot vegeta 40.0 47 0.001 24.1 3.5 27 16-42 146-172 (275)
318 PRK06718 precorrin-2 dehydroge 40.0 60 0.0013 22.1 3.9 33 3-40 10-42 (202)
319 PRK08849 2-octaprenyl-3-methyl 39.9 43 0.00092 24.9 3.5 33 1-38 1-33 (384)
320 PRK04280 arginine repressor; P 39.7 26 0.00056 22.9 2.0 25 21-45 22-46 (148)
321 PRK05636 replicative DNA helic 39.5 1.4E+02 0.0031 23.6 6.3 43 6-48 268-311 (505)
322 PRK08628 short chain dehydroge 39.5 1.2E+02 0.0027 20.7 7.3 21 21-41 21-41 (258)
323 TIGR02195 heptsyl_trn_II lipop 39.5 64 0.0014 23.4 4.3 41 5-45 1-43 (334)
324 PF03698 UPF0180: Uncharacteri 39.4 35 0.00075 19.9 2.3 22 20-41 10-31 (80)
325 PRK13234 nifH nitrogenase redu 39.3 1E+02 0.0023 22.2 5.3 37 1-37 1-38 (295)
326 KOG2941 Beta-1,4-mannosyltrans 39.3 1.8E+02 0.0038 22.4 10.5 57 3-67 12-70 (444)
327 PRK05579 bifunctional phosphop 39.3 37 0.0008 25.9 3.0 20 21-40 218-237 (399)
328 PRK15411 rcsA colanic acid cap 39.2 53 0.0011 22.3 3.6 18 94-114 37-54 (207)
329 PRK08850 2-octaprenyl-6-methox 39.2 42 0.00092 25.1 3.4 34 1-39 2-35 (405)
330 PRK12726 flagellar biosynthesi 38.6 1E+02 0.0022 23.8 5.1 39 6-44 209-247 (407)
331 PRK09165 replicative DNA helic 38.5 2E+02 0.0043 22.7 8.6 43 6-48 220-277 (497)
332 PRK12828 short chain dehydroge 38.4 98 0.0021 20.7 4.9 31 5-39 9-39 (239)
333 COG2210 Peroxiredoxin family p 38.3 1.1E+02 0.0023 19.9 4.6 32 15-46 15-46 (137)
334 PRK15043 transcriptional regul 38.3 92 0.002 22.2 4.7 37 5-42 164-200 (243)
335 PF01494 FAD_binding_3: FAD bi 38.0 41 0.00089 24.0 3.1 19 21-39 14-32 (356)
336 PRK00207 sulfur transfer compl 37.9 84 0.0018 19.8 4.1 23 16-38 16-39 (128)
337 PRK06194 hypothetical protein; 37.8 41 0.00088 23.6 2.9 19 21-39 20-38 (287)
338 PF06745 KaiC: KaiC; InterPro 37.6 98 0.0021 21.0 4.8 45 5-49 21-66 (226)
339 PRK08589 short chain dehydroge 37.6 1.4E+02 0.0031 20.8 7.5 20 21-40 20-39 (272)
340 cd00532 MGS-like MGS-like doma 37.5 65 0.0014 19.6 3.5 29 18-48 12-40 (112)
341 PRK06184 hypothetical protein; 37.4 51 0.0011 25.6 3.6 33 1-38 1-33 (502)
342 PRK06851 hypothetical protein; 37.4 90 0.002 23.7 4.8 42 5-46 31-73 (367)
343 PRK00421 murC UDP-N-acetylmura 37.4 67 0.0014 24.7 4.2 31 4-38 8-38 (461)
344 cd05126 Mth938 Mth938 domain. 37.2 61 0.0013 20.2 3.3 41 4-44 59-99 (117)
345 PRK13337 putative lipid kinase 37.2 85 0.0018 22.7 4.6 40 1-40 1-41 (304)
346 smart00382 AAA ATPases associa 37.1 64 0.0014 19.0 3.5 41 3-43 2-42 (148)
347 COG0451 WcaG Nucleoside-diphos 37.0 78 0.0017 22.3 4.3 33 6-42 3-35 (314)
348 PRK13982 bifunctional SbtC-lik 37.0 60 0.0013 25.5 3.9 43 4-47 71-113 (475)
349 TIGR01470 cysG_Nterm siroheme 37.0 71 0.0015 21.9 3.9 33 4-41 10-42 (205)
350 PRK03094 hypothetical protein; 37.0 41 0.00088 19.6 2.3 23 20-42 10-32 (80)
351 PRK08293 3-hydroxybutyryl-CoA 36.8 60 0.0013 23.2 3.7 35 1-40 1-35 (287)
352 TIGR00441 gmhA phosphoheptose 36.8 1E+02 0.0023 19.8 4.6 36 8-43 83-118 (154)
353 PRK05565 fabG 3-ketoacyl-(acyl 36.7 90 0.002 21.0 4.5 29 5-37 7-35 (247)
354 PRK08013 oxidoreductase; Provi 36.7 50 0.0011 24.7 3.4 34 1-39 1-34 (400)
355 PRK12921 2-dehydropantoate 2-r 36.5 44 0.00094 23.9 3.0 34 5-43 2-35 (305)
356 PRK05993 short chain dehydroge 36.2 1.1E+02 0.0024 21.5 4.9 19 21-39 18-36 (277)
357 PRK07251 pyridine nucleotide-d 36.2 60 0.0013 24.7 3.8 34 1-39 1-34 (438)
358 PRK09126 hypothetical protein; 36.1 48 0.001 24.5 3.2 33 1-38 1-33 (392)
359 TIGR02069 cyanophycinase cyano 36.1 1.5E+02 0.0033 21.0 5.5 37 3-39 28-65 (250)
360 PRK07666 fabG 3-ketoacyl-(acyl 36.0 49 0.0011 22.4 3.1 20 21-40 21-40 (239)
361 cd06219 DHOD_e_trans_like1 FAD 35.9 71 0.0015 22.3 3.9 37 5-43 99-135 (248)
362 PRK09183 transposase/IS protei 35.9 1.4E+02 0.0031 21.1 5.5 40 4-43 103-142 (259)
363 PRK06101 short chain dehydroge 35.9 49 0.0011 22.6 3.1 19 21-39 15-33 (240)
364 PRK06523 short chain dehydroge 35.8 1.2E+02 0.0026 20.8 5.0 19 21-39 23-41 (260)
365 PF03446 NAD_binding_2: NAD bi 35.8 48 0.001 21.5 2.9 19 21-39 14-32 (163)
366 COG0552 FtsY Signal recognitio 35.8 1.2E+02 0.0026 22.8 5.1 41 5-45 141-181 (340)
367 CHL00194 ycf39 Ycf39; Provisio 35.8 44 0.00096 24.1 2.9 32 5-40 2-33 (317)
368 cd00859 HisRS_anticodon HisRS 35.5 81 0.0017 17.4 3.8 35 5-40 3-37 (91)
369 cd02070 corrinoid_protein_B12- 35.4 99 0.0021 20.9 4.4 37 3-39 133-171 (201)
370 PLN02662 cinnamyl-alcohol dehy 35.1 46 0.001 23.7 2.9 33 4-40 5-37 (322)
371 PRK05912 tyrosyl-tRNA syntheta 35.1 51 0.0011 25.3 3.2 24 15-39 50-73 (408)
372 COG3433 Aryl carrier domain [S 35.0 23 0.0005 20.3 1.0 21 18-38 32-52 (74)
373 PRK07890 short chain dehydroge 35.0 52 0.0011 22.5 3.1 19 21-39 19-37 (258)
374 PRK05282 (alpha)-aspartyl dipe 35.0 1.5E+02 0.0033 20.8 5.4 38 3-40 31-70 (233)
375 PRK13869 plasmid-partitioning 35.0 1E+02 0.0023 23.5 4.9 29 11-39 130-158 (405)
376 PRK11259 solA N-methyltryptoph 35.0 45 0.00097 24.4 2.9 33 2-39 2-34 (376)
377 PRK13057 putative lipid kinase 34.9 1.2E+02 0.0025 21.7 4.9 36 6-42 2-37 (287)
378 PF13561 adh_short_C2: Enoyl-( 34.9 50 0.0011 22.6 3.0 22 21-42 10-31 (241)
379 PRK07454 short chain dehydroge 34.9 52 0.0011 22.3 3.0 34 4-40 6-39 (241)
380 PF10727 Rossmann-like: Rossma 34.8 59 0.0013 20.6 3.0 21 22-42 24-44 (127)
381 PRK00889 adenylylsulfate kinas 34.7 1.3E+02 0.0028 19.5 5.2 37 5-41 6-42 (175)
382 PF00230 MIP: Major intrinsic 34.6 22 0.00048 24.5 1.1 17 14-30 70-86 (227)
383 PLN02583 cinnamoyl-CoA reducta 34.6 48 0.001 23.7 2.9 19 21-39 20-38 (297)
384 TIGR03172 probable selenium-de 34.4 1.1E+02 0.0024 21.6 4.6 29 13-41 7-35 (232)
385 PRK13055 putative lipid kinase 34.4 98 0.0021 22.8 4.6 38 2-39 3-41 (334)
386 PF10657 RC-P840_PscD: Photosy 34.4 65 0.0014 20.5 3.0 39 4-42 47-85 (144)
387 PLN03209 translocon at the inn 34.4 1.1E+02 0.0023 24.8 4.9 34 4-40 80-113 (576)
388 PRK05653 fabG 3-ketoacyl-(acyl 34.3 58 0.0013 21.9 3.2 33 4-40 6-38 (246)
389 PLN03206 phosphoribosylformylg 34.3 3.6E+02 0.0077 24.4 8.4 60 3-74 1037-1097(1307)
390 PRK10416 signal recognition pa 34.3 1.2E+02 0.0027 22.3 5.0 39 5-43 116-154 (318)
391 PRK08335 translation initiatio 34.2 47 0.001 24.1 2.8 23 21-43 150-172 (275)
392 PF00289 CPSase_L_chain: Carba 34.1 35 0.00076 20.9 1.9 28 10-39 78-105 (110)
393 COG3598 RepA RecA-family ATPas 34.0 46 0.00099 25.1 2.7 41 5-45 90-141 (402)
394 COG0771 MurD UDP-N-acetylmuram 33.9 97 0.0021 24.2 4.5 36 3-43 7-42 (448)
395 PRK07102 short chain dehydroge 33.9 54 0.0012 22.3 3.0 20 21-40 15-34 (243)
396 COG1435 Tdk Thymidine kinase [ 33.9 1.6E+02 0.0035 20.4 6.9 41 4-44 4-45 (201)
397 cd06167 LabA_like LabA_like pr 33.8 84 0.0018 19.7 3.7 25 13-40 108-132 (149)
398 cd06192 DHOD_e_trans_like FAD/ 33.8 1.6E+02 0.0035 20.3 5.8 38 4-43 98-135 (243)
399 TIGR00521 coaBC_dfp phosphopan 33.7 51 0.0011 25.1 3.0 20 21-40 215-234 (390)
400 KOG1208 Dehydrogenases with di 33.7 52 0.0011 24.2 3.0 34 5-41 36-69 (314)
401 PRK05557 fabG 3-ketoacyl-(acyl 33.7 56 0.0012 22.0 3.1 34 3-40 5-38 (248)
402 TIGR01689 EcbF-BcbF capsule bi 33.7 73 0.0016 20.1 3.3 25 19-43 28-52 (126)
403 PRK09739 hypothetical protein; 33.6 1.5E+02 0.0032 19.9 5.1 39 1-39 1-42 (199)
404 PRK00054 dihydroorotate dehydr 33.6 1.6E+02 0.0035 20.5 5.4 37 5-43 104-140 (250)
405 cd03109 DTBS Dethiobiotin synt 33.5 1.2E+02 0.0027 18.9 4.5 36 7-42 3-38 (134)
406 PRK08533 flagellar accessory p 33.4 1.7E+02 0.0036 20.3 5.6 42 5-46 26-67 (230)
407 PF01370 Epimerase: NAD depend 33.4 75 0.0016 21.3 3.6 23 22-44 13-35 (236)
408 PRK13185 chlL protochlorophyll 33.4 1.3E+02 0.0028 21.1 5.0 32 6-37 5-36 (270)
409 cd00862 ProRS_anticodon_zinc P 33.3 1.2E+02 0.0026 20.6 4.6 37 3-39 10-51 (202)
410 PRK07773 replicative DNA helic 33.3 2.2E+02 0.0048 24.3 6.8 44 6-49 220-264 (886)
411 PRK00652 lpxK tetraacyldisacch 33.3 1.6E+02 0.0034 21.9 5.4 31 9-39 57-87 (325)
412 COG0446 HcaD Uncharacterized N 33.2 56 0.0012 24.0 3.2 22 20-41 148-169 (415)
413 PRK01372 ddl D-alanine--D-alan 33.2 1.3E+02 0.0028 21.4 5.0 42 1-42 2-47 (304)
414 PLN02211 methyl indole-3-aceta 33.0 1.3E+02 0.0029 21.2 5.0 36 4-40 19-54 (273)
415 PRK08560 tyrosyl-tRNA syntheta 33.0 64 0.0014 23.9 3.4 27 15-42 46-72 (329)
416 PRK07364 2-octaprenyl-6-methox 33.0 47 0.001 24.8 2.7 18 21-38 31-48 (415)
417 COG5148 RPN10 26S proteasome r 32.9 1.4E+02 0.003 20.6 4.6 36 5-40 110-145 (243)
418 PRK07067 sorbitol dehydrogenas 32.9 54 0.0012 22.5 2.9 32 6-40 8-39 (257)
419 cd02040 NifH NifH gene encodes 32.9 1.2E+02 0.0027 21.0 4.8 34 5-38 3-36 (270)
420 cd02072 Glm_B12_BD B12 binding 32.9 1.3E+02 0.0029 19.1 4.5 38 3-40 50-88 (128)
421 cd01423 MGS_CPS_I_III Methylgl 32.9 83 0.0018 19.1 3.4 28 19-48 14-41 (116)
422 cd01120 RecA-like_NTPases RecA 32.9 1.2E+02 0.0026 18.7 5.6 41 5-45 1-41 (165)
423 PHA02754 hypothetical protein; 32.8 73 0.0016 17.4 2.7 24 19-42 19-45 (67)
424 PF07015 VirC1: VirC1 protein; 32.8 1.5E+02 0.0033 20.9 5.0 39 6-44 4-43 (231)
425 TIGR01857 FGAM-synthase phosph 32.8 3.7E+02 0.008 24.2 8.8 70 2-75 976-1047(1239)
426 PRK12823 benD 1,6-dihydroxycyc 32.7 56 0.0012 22.5 2.9 19 21-39 22-40 (260)
427 PRK06372 translation initiatio 32.6 49 0.0011 23.7 2.6 21 22-42 125-145 (253)
428 TIGR02201 heptsyl_trn_III lipo 32.6 90 0.002 22.8 4.1 42 5-46 1-44 (344)
429 PHA02518 ParA-like protein; Pr 32.6 85 0.0018 20.8 3.8 31 11-41 9-39 (211)
430 PRK05703 flhF flagellar biosyn 32.5 1.4E+02 0.003 23.1 5.2 39 5-43 223-263 (424)
431 COG1432 Uncharacterized conser 32.3 1.4E+02 0.003 20.0 4.7 32 5-41 113-144 (181)
432 cd02037 MRP-like MRP (Multiple 32.3 1.3E+02 0.0027 19.5 4.4 31 10-40 7-37 (169)
433 TIGR03649 ergot_EASG ergot alk 32.1 50 0.0011 23.2 2.7 26 13-40 7-32 (285)
434 cd05017 SIS_PGI_PMI_1 The memb 31.8 1.2E+02 0.0027 18.4 6.6 34 9-42 48-81 (119)
435 PRK01710 murD UDP-N-acetylmura 31.8 76 0.0016 24.4 3.7 31 4-39 15-45 (458)
436 PRK08415 enoyl-(acyl carrier p 31.7 1.1E+02 0.0024 21.6 4.3 18 21-38 21-38 (274)
437 PRK00881 purH bifunctional pho 31.6 1.2E+02 0.0027 24.1 4.8 29 18-48 15-43 (513)
438 PRK10985 putative hydrolase; P 31.5 1.4E+02 0.0031 21.6 5.0 35 4-39 59-95 (324)
439 PF12965 DUF3854: Domain of un 31.5 83 0.0018 20.0 3.3 24 18-41 89-112 (130)
440 PRK08263 short chain dehydroge 31.5 1.3E+02 0.0028 21.0 4.7 19 21-39 17-35 (275)
441 PF02585 PIG-L: GlcNAc-PI de-N 31.5 1.3E+02 0.0027 18.4 7.3 19 22-40 16-34 (128)
442 PRK04328 hypothetical protein; 31.5 1.8E+02 0.004 20.3 5.4 44 5-48 25-68 (249)
443 TIGR03385 CoA_CoA_reduc CoA-di 31.4 1.4E+02 0.0031 22.5 5.1 32 4-40 138-169 (427)
444 PRK08309 short chain dehydroge 31.2 64 0.0014 21.5 2.9 20 21-40 13-32 (177)
445 cd06212 monooxygenase_like The 31.2 1.7E+02 0.0036 19.9 5.1 36 5-42 105-142 (232)
446 TIGR03264 met_CoM_red_C methyl 31.1 86 0.0019 21.4 3.4 34 6-39 36-70 (194)
447 PRK12825 fabG 3-ketoacyl-(acyl 31.1 64 0.0014 21.7 3.0 33 4-40 7-39 (249)
448 PF03403 PAF-AH_p_II: Platelet 31.0 59 0.0013 24.6 3.0 33 5-37 101-133 (379)
449 PRK13289 bifunctional nitric o 30.9 1.4E+02 0.003 22.4 5.0 35 5-41 263-299 (399)
450 TIGR00355 purH phosphoribosyla 30.9 1.2E+02 0.0026 24.1 4.6 27 20-48 13-39 (511)
451 PF13604 AAA_30: AAA domain; P 30.9 1.5E+02 0.0033 19.9 4.8 37 6-42 21-57 (196)
452 KOG0991 Replication factor C, 30.7 84 0.0018 22.8 3.4 28 3-30 48-75 (333)
453 PF01738 DLH: Dienelactone hyd 30.6 1.5E+02 0.0032 19.9 4.7 31 5-36 16-46 (218)
454 PRK14494 putative molybdopteri 30.6 1.4E+02 0.0029 21.0 4.5 33 6-38 4-36 (229)
455 PRK10125 putative glycosyl tra 30.6 66 0.0014 24.4 3.2 28 14-41 13-40 (405)
456 PRK06138 short chain dehydroge 30.6 62 0.0014 22.0 2.9 31 5-39 7-37 (252)
457 PF06925 MGDG_synth: Monogalac 30.5 1.1E+02 0.0024 19.9 3.9 22 16-37 1-25 (169)
458 cd00802 class_I_aaRS_core cata 30.5 77 0.0017 19.9 3.1 29 15-43 15-46 (143)
459 PRK12409 D-amino acid dehydrog 30.4 57 0.0012 24.4 2.8 30 5-39 3-32 (410)
460 TIGR01377 soxA_mon sarcosine o 30.4 59 0.0013 23.9 2.9 19 21-39 13-31 (380)
461 PRK06924 short chain dehydroge 30.4 63 0.0014 22.0 2.9 20 21-40 15-34 (251)
462 COG3349 Uncharacterized conser 30.4 52 0.0011 25.9 2.6 24 21-44 13-36 (485)
463 TIGR01830 3oxo_ACP_reduc 3-oxo 30.3 76 0.0017 21.3 3.3 21 20-40 11-31 (239)
464 PRK07023 short chain dehydroge 30.3 69 0.0015 21.8 3.1 19 21-39 15-33 (243)
465 PRK07533 enoyl-(acyl carrier p 30.3 1.3E+02 0.0027 20.9 4.4 33 5-39 11-44 (258)
466 KOG0224 Aquaporin (major intri 30.2 32 0.00069 25.4 1.3 18 13-30 88-105 (316)
467 PF03721 UDPG_MGDP_dh_N: UDP-g 30.1 72 0.0016 21.4 3.0 27 13-41 7-33 (185)
468 PRK08229 2-dehydropantoate 2-r 30.0 62 0.0013 23.6 2.9 33 4-41 3-35 (341)
469 TIGR01490 HAD-SF-IB-hyp1 HAD-s 29.9 1.6E+02 0.0035 19.3 4.8 38 89-128 88-125 (202)
470 PRK08594 enoyl-(acyl carrier p 29.9 64 0.0014 22.4 2.9 18 21-38 23-40 (257)
471 PRK07825 short chain dehydroge 29.8 1.4E+02 0.003 20.7 4.6 19 21-39 19-37 (273)
472 PRK08339 short chain dehydroge 29.8 66 0.0014 22.4 2.9 32 5-39 9-40 (263)
473 cd05710 SIS_1 A subgroup of th 29.8 1.4E+02 0.0029 18.2 4.3 37 7-43 50-86 (120)
474 PRK06196 oxidoreductase; Provi 29.7 69 0.0015 23.0 3.1 32 5-39 27-58 (315)
475 PRK08690 enoyl-(acyl carrier p 29.7 1.2E+02 0.0027 21.0 4.3 17 21-37 22-38 (261)
476 KOG1399 Flavin-containing mono 29.6 75 0.0016 24.7 3.4 32 2-38 5-36 (448)
477 PRK12475 thiamine/molybdopteri 29.6 78 0.0017 23.5 3.4 31 2-37 23-54 (338)
478 KOG0332 ATP-dependent RNA heli 29.6 55 0.0012 25.2 2.5 24 19-42 342-365 (477)
479 PRK06057 short chain dehydroge 29.6 1.7E+02 0.0038 20.0 5.0 34 3-40 7-40 (255)
480 TIGR01501 MthylAspMutase methy 29.6 1.6E+02 0.0034 18.9 5.2 45 4-48 2-46 (134)
481 PRK06847 hypothetical protein; 29.5 87 0.0019 23.0 3.6 33 1-38 1-34 (375)
482 TIGR00041 DTMP_kinase thymidyl 29.5 1.7E+02 0.0036 19.2 5.6 40 1-40 1-40 (195)
483 PRK07494 2-octaprenyl-6-methox 29.5 72 0.0016 23.6 3.2 31 4-39 8-38 (388)
484 PRK07063 short chain dehydroge 29.5 72 0.0016 22.0 3.1 19 21-39 21-39 (260)
485 PF01936 NYN: NYN domain; Int 29.4 68 0.0015 19.9 2.7 30 5-39 98-127 (146)
486 PRK12778 putative bifunctional 29.4 91 0.002 25.8 4.0 37 5-43 100-136 (752)
487 PRK08177 short chain dehydroge 29.4 68 0.0015 21.6 2.9 20 21-40 15-34 (225)
488 PRK07097 gluconate 5-dehydroge 29.4 1.4E+02 0.0029 20.7 4.5 19 21-39 24-42 (265)
489 PRK09922 UDP-D-galactose:(gluc 29.3 1.4E+02 0.0031 21.7 4.8 38 5-42 2-44 (359)
490 TIGR03574 selen_PSTK L-seryl-t 29.3 1.5E+02 0.0032 20.7 4.6 36 6-41 2-37 (249)
491 TIGR03467 HpnE squalene-associ 29.3 45 0.00098 24.7 2.1 15 24-38 3-17 (419)
492 PRK05868 hypothetical protein; 29.3 58 0.0012 24.2 2.7 18 21-38 14-31 (372)
493 TIGR01988 Ubi-OHases Ubiquinon 29.2 59 0.0013 23.8 2.7 18 21-38 12-29 (385)
494 PRK06483 dihydromonapterin red 29.1 75 0.0016 21.5 3.1 19 21-39 16-34 (236)
495 PRK08862 short chain dehydroge 29.0 71 0.0015 21.9 2.9 32 5-39 6-37 (227)
496 TIGR03029 EpsG chain length de 29.0 1.9E+02 0.0042 20.3 5.2 36 4-39 103-140 (274)
497 PF08445 FR47: FR47-like prote 28.9 1.2E+02 0.0026 17.4 3.8 25 20-44 43-67 (86)
498 PRK08340 glucose-1-dehydrogena 28.9 75 0.0016 21.9 3.1 20 21-40 14-33 (259)
499 PRK07041 short chain dehydroge 28.8 71 0.0015 21.4 2.9 20 21-40 11-30 (230)
500 cd06183 cyt_b5_reduct_like Cyt 28.8 1.9E+02 0.0041 19.5 5.2 37 4-42 105-144 (234)
No 1
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.95 E-value=4.8e-27 Score=176.14 Aligned_cols=119 Identities=25% Similarity=0.510 Sum_probs=95.7
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCC--CCCCHHH
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE--DRNDFGK 80 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~ 80 (128)
++||+++|||+|||++||++|||+|+++|++|||++|+.+.+++.... .++|+|..+|+++|++. ...+...
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~------~~~i~~~~ipdglp~~~~~~~~~~~~ 78 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDP------SSPISIATISDGYDQGGFSSAGSVPE 78 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCC------CCCEEEEEcCCCCCCcccccccCHHH
Confidence 359999999999999999999999999999999999998876553321 13599999999888632 2234556
Q ss_pred HHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 81 LIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
++..+.+.+.++++++++++..++ .+++|||+|+|++|+.+||+++|
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~-~Pv~cvV~D~f~~Wa~dVA~elg 125 (449)
T PLN02173 79 YLQNFKTFGSKTVADIIRKHQSTD-NPITCIVYDSFMPWALDLAREFG 125 (449)
T ss_pred HHHHHHHhhhHHHHHHHHHhhccC-CCceEEEECCcchhHHHHHHHhC
Confidence 777776678889999998875322 34599999999999999999987
No 2
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.94 E-value=2.3e-26 Score=172.71 Aligned_cols=123 Identities=28% Similarity=0.460 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHH-CCCeEEEEeCcch-hhhhhhhhccCCCCCCCceEEecCCCCCCCC-C-CC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYY-HKRVVESLQGKNYLEEQIRLVSIPDGMEPWE-D-RN 76 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~-rG~~Vt~~~t~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-~~ 76 (128)
|+++||+++|+|++||+|||++|||+|++ +|+.|||++|+.+ .+.+.+.. ...++++|+.+++++|++. . ..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~----~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH----NNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC----CCCCCEEEEEcCCCCCCccccccc
Confidence 78899999999999999999999999996 7999999999965 22222211 1113699999998887652 1 23
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 77 DFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
+....+..+...+.++++++++++...+ .+++|||+|++++|+.+||+++|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lg 127 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFH 127 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhC
Confidence 4444555556677888999999875322 46799999999999999999987
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.94 E-value=4.1e-26 Score=171.44 Aligned_cols=119 Identities=19% Similarity=0.356 Sum_probs=93.8
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCC-CCCCHHHH
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE-DRNDFGKL 81 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~ 81 (128)
+.||+++|||+|||++||++||++|++||++|||++|+.+..+. . ....+|+|..+|+++|++. +......+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 45999999999999999999999999999999999999875321 1 0113699999999887642 22233456
Q ss_pred HHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 82 IENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
+..+.+.+...++++++++..+.+.+++|||+|+|++|+.+||+++|
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lg 126 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFK 126 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcC
Confidence 66666677788999998875322257899999999999999999987
No 4
>PLN02562 UDP-glycosyltransferase
Probab=99.94 E-value=7.8e-26 Score=169.96 Aligned_cols=119 Identities=27% Similarity=0.607 Sum_probs=95.2
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCCCCCCHHHHH
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLI 82 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (128)
++||+++|||++||++||++||++|+++|++|||++|+.+.+++.+.... .++|+|+.+|++.+.+. ..+...+.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~g~~~~~-~~~~~~l~ 80 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISDGQDDDP-PRDFFSIE 80 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCCCCCCCc-cccHHHHH
Confidence 45999999999999999999999999999999999999987766543211 13699999998775432 22344555
Q ss_pred HHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 83 ENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
+.+...+.++++++++++... .+++|||+|++++|+.+||+++|
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~g 124 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCG 124 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhC
Confidence 566556888999999988532 35799999999999999999987
No 5
>PLN02555 limonoid glucosyltransferase
Probab=99.94 E-value=1.4e-25 Score=169.50 Aligned_cols=125 Identities=27% Similarity=0.466 Sum_probs=94.5
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhh---cc--CCCCCCCceEEecCCCCCCCCC-CC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESL---QG--KNYLEEQIRLVSIPDGMEPWED-RN 76 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~---~~--~~~~~~~i~~~~~~~~~~~~~~-~~ 76 (128)
++||+++|+|+|||++||++||++|++||+.|||++|+.+..++.+.. .+ .......++|..+|+++|++.+ ..
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 579999999999999999999999999999999999998776654311 00 0001123778878888876532 22
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 77 DFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
+...++..+...+.++++++++++..++ .+++|||+|+|++|+.+||+++|
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~g 137 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELG 137 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcC
Confidence 4445666665567788999998875322 45699999999999999999987
No 6
>PLN02534 UDP-glycosyltransferase
Probab=99.93 E-value=5.3e-25 Score=166.60 Aligned_cols=122 Identities=26% Similarity=0.474 Sum_probs=88.5
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecC-----CCCCCCCC-CC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP-----DGMEPWED-RN 76 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~-~~ 76 (128)
+.||+++|||+|||++||++||++|++||+.|||++|+.+..++.+...........|+|+.+| +++|++.. ..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 4699999999999999999999999999999999999998766544321110111248999887 57776521 11
Q ss_pred --CHHHHHHH---HHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 77 --DFGKLIEN---FLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 77 --~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
....++.. ....+.+.+++++++.. .+|+|||+|+|++|+.+||+++|
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~----~pp~cIV~D~f~~Wa~dVA~~lg 140 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQAK----PPPSCIISDKCLSWTSKTAQRFN 140 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhcC----CCCcEEEECCccHHHHHHHHHhC
Confidence 11122222 23345667777776541 57899999999999999999987
No 7
>PLN00164 glucosyltransferase; Provisional
Probab=99.93 E-value=8e-25 Score=165.64 Aligned_cols=123 Identities=19% Similarity=0.287 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCC----CeEEEEeCcchhh----hhhhhhccCCCCCCCceEEecCCCCCCC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHG----FRVTFVNTDYYHK----RVVESLQGKNYLEEQIRLVSIPDGMEPW 72 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG----~~Vt~~~t~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 72 (128)
|.++||+++|||+|||++||++||++|++|| +.|||++|+.+.. ++.+...+......+|+|..+|++.++.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 8899999999999999999999999999997 8999999886532 3332211100111259999999754221
Q ss_pred CCCCCHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 73 EDRNDFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
...+...++..+.+.+.++++++++++. .+++|||+|+|++|+.+||+++|
T Consensus 81 -~~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elg 131 (480)
T PLN00164 81 -DAAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELA 131 (480)
T ss_pred -ccccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhC
Confidence 1123345555556677788898888762 46799999999999999999987
No 8
>PLN02670 transferase, transferring glycosyl groups
Probab=99.93 E-value=6.1e-25 Score=165.62 Aligned_cols=117 Identities=28% Similarity=0.470 Sum_probs=89.4
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecC----CCCCCCCC-CCC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP----DGMEPWED-RND 77 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~-~~~ 77 (128)
++||+++|||+|||++||++|||+|++||++|||++|+.+..++.+... ....+|+++.+| +++|++.. ..+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccCCCCCCcccccc
Confidence 4599999999999999999999999999999999999998766543211 111358999887 56765421 112
Q ss_pred H----HHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 78 F----GKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
. ..++....+.+.+.++++++++ +++|||+|+|++|+.+||+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~cvI~D~f~~wa~~vA~~~g 131 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLETS------KPDWIIYDYASHWLPSIAAELG 131 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC------CCcEEEECCcchhHHHHHHHcC
Confidence 1 1234444556777788888763 6899999999999999999987
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.93 E-value=8.4e-25 Score=165.31 Aligned_cols=119 Identities=25% Similarity=0.334 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecC----CCCCCCCC-CC
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP----DGMEPWED-RN 76 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~-~~ 76 (128)
.++||+++|||+|||++||++|||+|+++|++|||++|+.+.+++.+.... .++++++.+| +++|++.+ ..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~----~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK----HPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc----CCCeeEEeCCCCCcCCCCCCCcChh
Confidence 367999999999999999999999999999999999999998776543211 1357777654 24544421 11
Q ss_pred ----CHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 77 ----DFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 77 ----~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
+....+......+.++++++++++. .+|+|||+|++++|+.+||+++|
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~----~~p~cvI~D~f~~Wa~dVA~e~G 135 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSHP----SPPVAIISDMFLGWTQNLACQLG 135 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhCC----CCCeEEEEcCchHhHHHHHHHcC
Confidence 1122222233355566777776642 47899999999999999999987
No 10
>PLN02210 UDP-glucosyl transferase
Probab=99.92 E-value=1.8e-24 Score=162.91 Aligned_cols=115 Identities=24% Similarity=0.390 Sum_probs=88.2
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHH--HHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCCCCCCHHH
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQC--LAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGK 80 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~--L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (128)
++||+++|+|++||++||++||++ |++||++|||++|+.+.+++.+... ....+++..+|+++|++.. .+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~----~~~~~~~~~~~~glp~~~~-~~~~~ 82 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK----PRRPVDLVFFSDGLPKDDP-RAPET 82 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC----CCCceEEEECCCCCCCCcc-cCHHH
Confidence 469999999999999999999999 5699999999999998766532111 1135788888888876531 23345
Q ss_pred HHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 81 LIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
++..+.+.+...+++++++ .+|||||+|++++|+.+||+++|
T Consensus 83 ~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lg 124 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHN 124 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhC
Confidence 5555555555666666654 36999999999999999999987
No 11
>PLN02207 UDP-glycosyltransferase
Probab=99.92 E-value=4.3e-24 Score=160.90 Aligned_cols=127 Identities=17% Similarity=0.310 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCC--CeEEEEeCcchh-hhhhhhhccCCCCCCCceEEecCCCCCCC--CCC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYYH-KRVVESLQGKNYLEEQIRLVSIPDGMEPW--EDR 75 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG--~~Vt~~~t~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~ 75 (128)
|+++||+++|+|++||++||++||++|+++| +.|||++|+.+. ..+...........++++|..+|++...+ ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 8999999999999999999999999999998 999999999875 22221111000111369999999643211 112
Q ss_pred CCHHHHHHHHHHHc----hHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 76 NDFGKLIENFLQVM----PGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 76 ~~~~~~~~~~~~~~----~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
.+....+..+.+.+ .+.++++++++..+ +++++|||+|+|++|+.+||+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~pv~cvV~D~~~~w~~~vA~~~g 136 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALD-GVKVKGFVADFFCLPMIDVAKDVS 136 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccC-CCCeEEEEECCcchHHHHHHHHhC
Confidence 23333332233344 33455555544221 135699999999999999999987
No 12
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.92 E-value=5.2e-24 Score=160.82 Aligned_cols=117 Identities=23% Similarity=0.346 Sum_probs=87.5
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHH-HCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCC----CCCCCCCCC
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD----GMEPWEDRN 76 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~-~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~ 76 (128)
.++||+++|||++||++||++|||+|+ ++|++|||++|+.+..++.+... ...+|++..+|+ ++++.. .
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~glp~~~--~ 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDISGLVDPS--A 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccccCCCCCC--c
Confidence 467999999999999999999999998 79999999999988765533221 112588988884 443111 1
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 77 DFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
+....+..+...+.+.++++++++. .+|+|||+|++++|+.+||+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elg 125 (481)
T PLN02992 78 HVVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFN 125 (481)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcC
Confidence 2222233333456677888887762 47899999999999999999987
No 13
>PLN03004 UDP-glycosyltransferase
Probab=99.92 E-value=6.3e-24 Score=159.47 Aligned_cols=126 Identities=12% Similarity=0.223 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCC--CeEEE--EeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCC--C
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHG--FRVTF--VNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE--D 74 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG--~~Vt~--~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~ 74 (128)
|++.||+++|+|+|||++||++|||+|++|| +.||+ ++++.+...+.+.........++|+|+.+|++.+.+. .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 7899999999999999999999999999998 44555 5555544332221110001123699999997653221 1
Q ss_pred C-CCHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 75 R-NDFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 75 ~-~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
. .+....+..+.+.+..+++++++++... .+++|||+|++++|+.+||+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~pv~cII~D~~~~Wa~~vA~~lg 133 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRN--FNVRAMIIDFFCTAVLDITADFT 133 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCC--CCceEEEECCcchhHHHHHHHhC
Confidence 1 1223333334456777889999887321 46799999999999999999987
No 14
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.92 E-value=5.3e-24 Score=160.60 Aligned_cols=117 Identities=26% Similarity=0.492 Sum_probs=94.3
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHC--CCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCCC-CCCHH
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWED-RNDFG 79 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~r--G~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 79 (128)
+.||+++|+|++||++||++||++|++| |++|||++|+.+.+++.+... ..+++|+.+|+++|++.. ..+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCCCCCCccccccCHH
Confidence 5799999999999999999999999999 999999999998876655321 136999999987665421 23444
Q ss_pred HHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 80 KLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
.++..+.+.+...++++++++. .++||||+|.+++|+.++|+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lg 129 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRN 129 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhC
Confidence 5555555567778888888774 37899999999999999999987
No 15
>PLN03015 UDP-glucosyl transferase
Probab=99.92 E-value=8.2e-24 Score=159.20 Aligned_cols=122 Identities=19% Similarity=0.284 Sum_probs=89.0
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHC-CCeEEEEeCcchhhhhhhh--hccCCCCCCCceEEecCCCCCCCC-CC-
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKRVVES--LQGKNYLEEQIRLVSIPDGMEPWE-DR- 75 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~r-G~~Vt~~~t~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~-~~- 75 (128)
|.++||+++|+|++||++||++||++|+++ |..|||++|+.+...+... ..+. ...++|++..+|+...++- ..
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAA-AARTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccc-cCCCceEEEECCCCccccCCCCC
Confidence 789999999999999999999999999987 9999999998766443111 1100 0112599999985322110 11
Q ss_pred CCHH-HHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 76 NDFG-KLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 76 ~~~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
.+.. .++. ..+.+.++++++++++. .+|+|||+|+|++|+.+||+++|
T Consensus 80 ~~~~~~~~~-~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lg 128 (470)
T PLN03015 80 ATIFTKMVV-KMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVG 128 (470)
T ss_pred ccHHHHHHH-HHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcC
Confidence 1232 3333 34467788999998874 36899999999999999999987
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.91 E-value=8.2e-24 Score=160.33 Aligned_cols=122 Identities=17% Similarity=0.305 Sum_probs=82.4
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCC--CeEEEEeCcchhhhhhh-h--hccCCC-CCCCceEEecCCCCCCCCCCC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYYHKRVVE-S--LQGKNY-LEEQIRLVSIPDGMEPWEDRN 76 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG--~~Vt~~~t~~~~~~~~~-~--~~~~~~-~~~~i~~~~~~~~~~~~~~~~ 76 (128)
+.||+++|+|++||++||++|||+|++|| ..|||++|+.+..++.+ . ..+... ..++|+|+.+|++.++.....
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 56999999999999999999999999998 89999999987643211 0 100000 123599999997654221111
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhcC----CCCCccEEEeCCCcccHHHHHHhcC
Q 040997 77 DFGKLIENFLQVMPGKLEKLIEEINSR----EDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
....++ +.+...+++.++++..+ .+.+++|||+|+|++|+.+||+++|
T Consensus 82 ~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lg 133 (481)
T PLN02554 82 TFQSYI----DNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFG 133 (481)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhC
Confidence 222222 23444555555555321 1134589999999999999999987
No 17
>PLN00414 glycosyltransferase family protein
Probab=99.91 E-value=1.8e-23 Score=156.99 Aligned_cols=115 Identities=27% Similarity=0.403 Sum_probs=80.1
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEec--C--CCCCCCCC-CCC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSI--P--DGMEPWED-RND 77 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~~~~~~~-~~~ 77 (128)
++||+++|||++||+|||++|||+|+++|++|||++|+.+..++.+... ..++++|..+ | +++|++.. ..+
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~dGLP~g~e~~~~ 79 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPVDGLPFGAETASD 79 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCcCCCCCccccccc
Confidence 5699999999999999999999999999999999999988766544311 1124788554 3 56765521 111
Q ss_pred H----HHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 78 F----GKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
. ...+....+.+.+.++++++. .+|+|||+|+ ++|+.+||+++|
T Consensus 80 l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lg 127 (446)
T PLN00414 80 LPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFG 127 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhC
Confidence 1 111222222333445554432 3689999996 899999999987
No 18
>PLN02764 glycosyltransferase family protein
Probab=99.90 E-value=3.8e-23 Score=155.08 Aligned_cols=117 Identities=25% Similarity=0.337 Sum_probs=85.2
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecC--CCCCCCCC-C---C
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP--DGMEPWED-R---N 76 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~-~---~ 76 (128)
++||+++|||++||++||++||++|++||++|||++|+.+...+.+. . .......+++.++| +++|++.+ . .
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~-~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N-LFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c-cCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 57999999999999999999999999999999999999987655432 1 00011237777787 67766521 1 1
Q ss_pred -CHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 77 -DFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
.....+....+.+.++++++++++ +|+|||+|+ ++|+.+||+++|
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~~------~~~~iV~D~-~~w~~~vA~~~g 128 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRAV------EPDLIFFDF-AHWIPEVARDFG 128 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHhC------CCCEEEECC-chhHHHHHHHhC
Confidence 111222233345667788888763 579999996 899999999987
No 19
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.90 E-value=6.3e-23 Score=155.58 Aligned_cols=123 Identities=26% Similarity=0.442 Sum_probs=81.7
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccC----CCCCCCceEEecC---CCCCCCCCC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGK----NYLEEQIRLVSIP---DGMEPWEDR 75 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~----~~~~~~i~~~~~~---~~~~~~~~~ 75 (128)
+.||+++|+|++||+||+++||++|++||++|||++|+.+.+++.+..... +.....+.+.++| +++|++...
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 569999999999999999999999999999999999999887665443211 0111134555566 456654211
Q ss_pred ---------CCHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 76 ---------NDFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 76 ---------~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
.....+...+..... .+.+.++++.++ .+|||||+|.+++|+.+||+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lg 143 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTK-YFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFG 143 (482)
T ss_pred ccccccccccchHHHHHHHHHHHH-HHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhC
Confidence 012233333332222 233333333222 47899999999999999999987
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.90 E-value=6e-23 Score=155.44 Aligned_cols=128 Identities=19% Similarity=0.255 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCC---eEEEEeCcchhh-hhhhhhccCCCCCCCceEEecCCCC-CCCCC-
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGF---RVTFVNTDYYHK-RVVESLQGKNYLEEQIRLVSIPDGM-EPWED- 74 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~---~Vt~~~t~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~- 74 (128)
|+++||+++|||+|||++||++|||+|++||. .||+++|+.+.. .............++|+|+.+|++. +++..
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 78999999999999999999999999999994 567777654321 1111110000112369999999754 21111
Q ss_pred -CCCHHHHHHHHHHHchHHHHHHHHHHhcC---CCC-CccEEEeCCCcccHHHHHHhcC
Q 040997 75 -RNDFGKLIENFLQVMPGKLEKLIEEINSR---EDE-KIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---~~~-~~d~vI~D~~~~~~~~vA~~lg 128 (128)
.......+..+...+...++++++++..+ ++. +++|||+|+|++|+.+||+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elg 139 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFN 139 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhC
Confidence 11121222233345566777777776321 112 5699999999999999999987
No 21
>PLN02208 glycosyltransferase family protein
Probab=99.90 E-value=6.2e-23 Score=153.97 Aligned_cols=117 Identities=26% Similarity=0.415 Sum_probs=81.8
Q ss_pred CCC-CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEec--C--CCCCCCCC-
Q 040997 1 MSS-PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSI--P--DGMEPWED- 74 (128)
Q Consensus 1 m~~-~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~~~~~~~- 74 (128)
|++ +||+++|||++||++||++||++|++||++|||++|+.+.+++.+... ...++++..+ | +++|++..
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a----~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL----FPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC----CCCceEEEEeCCCCccCCCCCccc
Confidence 554 599999999999999999999999999999999999988776544211 1124566654 3 46665422
Q ss_pred CCCHH----HHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 75 RNDFG----KLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 75 ~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
..+.. .++....+.+.+.+++++++ .++||||+| +++|+.+||+++|
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~g 127 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHM 127 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhC
Confidence 11221 12222233444556666654 368999999 5899999999987
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.75 E-value=9.7e-18 Score=124.23 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=82.7
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCC---C------
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE---D------ 74 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~------ 74 (128)
+||+++++|+.||++|++.||++|.+|||+|||++++.+...+.+ .+++|.++++..+... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA---------AGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH---------cCCceeeCCCCHHHHHhhhhhccccc
Confidence 489999999999999999999999999999999999988766654 3678888765332100 0
Q ss_pred ---CCCHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 75 ---RNDFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
..........+.+.....++++++.+.. .+|||||+|.+++|+..+|+++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~g 125 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALG 125 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhC
Confidence 0111222333344444555666665543 68999999999999999999876
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.70 E-value=2.3e-16 Score=116.85 Aligned_cols=108 Identities=25% Similarity=0.311 Sum_probs=78.3
Q ss_pred EcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCC--CCC---CCHHHHHH
Q 040997 9 MPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPW--EDR---NDFGKLIE 83 (128)
Q Consensus 9 ~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~---~~~~~~~~ 83 (128)
+.+|+.||++|++.||++|.+|||+|||++++.+.+.+.+. ++.|.++++..+.. ... .....+.+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHH
Confidence 35789999999999999999999999999999998877663 67888887543321 100 12233444
Q ss_pred HHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 84 NFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
.+.......+.++.+.+.+ .+|||||+|.+++|+..+|+++|
T Consensus 72 ~~~~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~g 113 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWD 113 (392)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhC
Confidence 4444444444555544433 58999999999999999999886
No 24
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.41 E-value=5.8e-14 Score=90.08 Aligned_cols=112 Identities=18% Similarity=0.259 Sum_probs=70.6
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCCCCCCHHHHHHHH
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIENF 85 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (128)
|+++..+..||++|++.||++|.+|||+|++.+.+.+.+.+.+ .++.|.+++.+.+.. ............
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~---------~Gl~~~~~~~~~~~~-~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA---------AGLEFVPIPGDSRLP-RSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH---------TT-EEEESSSCGGGG-HHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc---------cCceEEEecCCcCcC-cccchhhhhhhH
Confidence 6889999999999999999999999999999999999888755 479999987541000 000011111111
Q ss_pred HH---HchHHHHHHHHHHhcC------CCCCccEEEeCCCcccHHHHHHhcC
Q 040997 86 LQ---VMPGKLEKLIEEINSR------EDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 86 ~~---~~~~~~~~ll~~l~~~------~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
.+ .... +.+.+++.... +....|+++.+.....+..+|+++|
T Consensus 71 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~ 121 (139)
T PF03033_consen 71 ARLIRGLEE-AMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLG 121 (139)
T ss_dssp HHHHHHHHH-HHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHT
T ss_pred HHHhhhhhH-HHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhC
Confidence 11 1111 22222222111 1135778888998888999999875
No 25
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.38 E-value=1e-12 Score=99.96 Aligned_cols=124 Identities=23% Similarity=0.370 Sum_probs=73.9
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCC----CCCCceEEecCCCCCCCCCCC--
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNY----LEEQIRLVSIPDGMEPWEDRN-- 76 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~-- 76 (128)
..|++++|+|++||++|+++||++|+.+||+||++++..+....... ..... ......+...+++++.+....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 46999999999999999999999999999999999998876543221 10000 000111212222333221100
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhc
Q 040997 77 DFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKM 127 (128)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l 127 (128)
........+...+...+++....+......++||+|+|.+..|...+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~ 134 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPS 134 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccc
Confidence 111112333445555555544443322213499999999988988887653
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.92 E-value=4.2e-09 Score=78.91 Aligned_cols=56 Identities=27% Similarity=0.411 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD 67 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 67 (128)
+++|+++..|..||++|++.||++|..+||+|+|++++.+.+.+.+. ++.|..++.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~ 56 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPI 56 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------Ccceeeccc
Confidence 46899999999999999999999999999999999999999888774 466776654
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.87 E-value=4.3e-10 Score=85.81 Aligned_cols=113 Identities=27% Similarity=0.317 Sum_probs=53.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCC---CCCC----
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE---DRND---- 77 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~---- 77 (128)
+|+++|. +.+|+++|..++++|++|||+||++++.... .+.... ...+++..++.+.+... ....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSK------PSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccccc------ccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888884 7799999999999999999999999876432 222111 13577777765443321 0010
Q ss_pred ----------HHHHHHHH-------HHHchHHH--HHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 78 ----------FGKLIENF-------LQVMPGKL--EKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 78 ----------~~~~~~~~-------~~~~~~~~--~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
....++.. ...|...+ +++++.+.+ .++|++|+|.+.+|+..+|+.+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~ 140 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLG 140 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHH
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhc
Confidence 01111110 11221111 223333332 37999999999999999998764
No 28
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.68 E-value=1.8e-07 Score=71.98 Aligned_cols=116 Identities=15% Similarity=0.259 Sum_probs=66.5
Q ss_pred CeEEEE-cCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCC---CCC----CCC--
Q 040997 4 PHVLVM-PGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD---GME----PWE-- 73 (128)
Q Consensus 4 ~hvl~~-p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~----~~~-- 73 (128)
.+|+++ |.++.+|+.-+-.++++|++|||+||++++.... ...... ...++...++. ... ...
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASHL------CGNITEIDASLSVEYFKKLVKSSAVF 93 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccCC------CCCEEEEEcCCChHHHHHHHhhhhHH
Confidence 468766 8899999999999999999999999999775321 110000 12344443321 000 000
Q ss_pred CC-C---CHHH----HHHHHHHHchHHH--HHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhc
Q 040997 74 DR-N---DFGK----LIENFLQVMPGKL--EKLIEEINSREDEKIDCFIADGNMGWSLEVAKKM 127 (128)
Q Consensus 74 ~~-~---~~~~----~~~~~~~~~~~~~--~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l 127 (128)
.. . +... ....+.+.|...+ .++.+.|.++. .++|++|+|.+..|+..+|+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~-~kFDlvi~e~~~~c~~~la~~~ 156 (507)
T PHA03392 94 RKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN-NKFDLLVTEAFLDYPLVFSHLF 156 (507)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC-CceeEEEecccchhHHHHHHHh
Confidence 00 0 0011 1112223333333 33444443111 5799999999989998899887
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.65 E-value=8.3e-07 Score=63.96 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=60.2
Q ss_pred CeEEEEcCC-CcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCC-CCCCCCCCCCHHHH
Q 040997 4 PHVLVMPGP-AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD-GMEPWEDRNDFGKL 81 (128)
Q Consensus 4 ~hvl~~p~p-~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~ 81 (128)
+||++.... |.||+.-.+.|+++| |||+|+|++.....+.+.. .+....+++ +.......-+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEeccCCccchHHH
Confidence 467777644 779999999999999 6999999998855433322 133444432 11111111111111
Q ss_pred HHHH---HHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhc
Q 040997 82 IENF---LQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKM 127 (128)
Q Consensus 82 ~~~~---~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~l 127 (128)
.... .......++++.+.+.+ .+||+||+|.. +++...|+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD~~-~~~~~aa~~~ 113 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE---FRPDLVISDFY-PLAALAARRA 113 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEcCh-HHHHHHHHhc
Confidence 1111 11122334555555544 58999999964 3455555544
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.55 E-value=1.5e-06 Score=63.18 Aligned_cols=109 Identities=15% Similarity=0.213 Sum_probs=58.8
Q ss_pred EEE-EcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCce-EEecCC-CCCCCCCCCCHHHHH
Q 040997 6 VLV-MPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIR-LVSIPD-GMEPWEDRNDFGKLI 82 (128)
Q Consensus 6 vl~-~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~-~~~~~~-~~~~~~~~~~~~~~~ 82 (128)
|++ +...|.||+.|.+.++++|.+ ||+|+|+++......+... ++. +...|. ........-+....+
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~l 71 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLKGEDGKVNIVKTL 71 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEeecCCcCcHHHHH
Confidence 445 456677999999999999999 9999999877733333221 122 222221 010000001112111
Q ss_pred HHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 83 ENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
..........+.+..+.+.+ .+||+||+| +-+.+..+|+.+|
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~ 113 (321)
T TIGR00661 72 RNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLK 113 (321)
T ss_pred HhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcC
Confidence 11101101234444444443 589999999 5566666776654
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.20 E-value=3.7e-05 Score=56.79 Aligned_cols=55 Identities=22% Similarity=0.445 Sum_probs=40.8
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh-hhhhhhccCCCCCCCceEEecCC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK-RVVESLQGKNYLEEQIRLVSIPD 67 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~-~~~~~~~~~~~~~~~i~~~~~~~ 67 (128)
+|++......||++|.+.+|++|..+||+|.|+.++.-.. .+.. ..++.+..++.
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~--------~~g~~~~~~~~ 58 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE--------KENIPYYSISS 58 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCc--------ccCCcEEEEec
Confidence 5777776667999999999999999999999998765432 1111 12577777763
No 32
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.70 E-value=0.0012 Score=48.04 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=32.6
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+|+++.....||+.....|++.|..+||+|++++.+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 6888887778999988899999999999999997643
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.68 E-value=0.0013 Score=48.15 Aligned_cols=38 Identities=32% Similarity=0.599 Sum_probs=33.8
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
++|+++.....||..-++.|++.|..+||+|++++.+.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 57888886667999999999999999999999998865
No 34
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.0016 Score=48.36 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=60.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCC-eEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCC-CCCCHHHHH
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWE-DRNDFGKLI 82 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~-~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~ 82 (128)
.|++....+-||+.|.+.|+++|..+|+ +|.++.+.......... ..++.+..++.+-..+. ........+
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~~~~~~~~~~~~~~~~ 74 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSGGLRRKGSLKLLKAPF 74 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecccccccCcHHHHHHHH
Confidence 3556666667999999999999999999 57777665554332221 13677887765332221 111111111
Q ss_pred HHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCc-ccHHHHHHh
Q 040997 83 ENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNM-GWSLEVAKK 126 (128)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~-~~~~~vA~~ 126 (128)
... .... ...+++++ .+||+||.=.-. ..-..+|..
T Consensus 75 ~~~-~~~~-~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~ 111 (357)
T COG0707 75 KLL-KGVL-QARKILKK------LKPDVVIGTGGYVSGPVGIAAK 111 (357)
T ss_pred HHH-HHHH-HHHHHHHH------cCCCEEEecCCccccHHHHHHH
Confidence 111 1111 23455555 489999995533 334444443
No 35
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.55 E-value=0.003 Score=45.91 Aligned_cols=37 Identities=30% Similarity=0.581 Sum_probs=32.1
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+|++......||+...+.|++.|.++||+|++++...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~ 37 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKR 37 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 4667776667999999999999999999999998764
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.28 E-value=0.0032 Score=45.08 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=28.5
Q ss_pred CCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 12 p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
-|.||+.=++.||++|..+|++|+|++.....
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~ 43 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPG 43 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 36799999999999999999999999887544
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=97.27 E-value=0.0041 Score=46.50 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=32.6
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
++|++...-..||+.|. .|+++|.++|.+++|+....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc
Confidence 57888887778999999 99999999999999988654
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.15 E-value=0.003 Score=46.61 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=46.3
Q ss_pred CCeEEEEc--CCCcCChHHHHHHHHHHHHC--CCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCC
Q 040997 3 SPHVLVMP--GPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD 67 (128)
Q Consensus 3 ~~hvl~~p--~p~~GH~~P~l~la~~L~~r--G~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 67 (128)
.++|+|.+ ..|.||+-=++.+|..|+.. |++|++++.......+... .+++++.+|.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~--------~gVd~V~LPs 69 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGP--------AGVDFVKLPS 69 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCc--------ccCceEecCc
Confidence 34899998 67789999999999999986 9999999987665444221 4799999984
No 39
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.13 E-value=0.017 Score=42.92 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=26.5
Q ss_pred eEEEEc--CCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMP--GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p--~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+|||+- +|+| +-+||+.|+++||+|++++.....
T Consensus 1 ~il~~~~~~p~~-----~~~la~~L~~~G~~v~~~~~~~~~ 36 (396)
T cd03818 1 RILFVHQNFPGQ-----FRHLAPALAAQGHEVVFLTEPNAA 36 (396)
T ss_pred CEEEECCCCchh-----HHHHHHHHHHCCCEEEEEecCCCC
Confidence 356663 5554 678999999999999999887664
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.43 E-value=0.048 Score=40.22 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
++|+++..-..||+.|.+ +++.|.++++++.++....
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~ 38 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG 38 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc
Confidence 378888877789999999 9999999888877776543
No 41
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.38 E-value=0.11 Score=39.16 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
..+|.++.....|+-.=+..+|+.|+++||+||+++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~ 41 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLE 41 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecC
Confidence 457777877777777778999999999999999998754
No 42
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.35 E-value=0.076 Score=34.16 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=42.4
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
|++++|++...++-+|-.-..-++..|.++|++|+++-.....+.+...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 7899999999999999999999999999999999999877665554443
No 43
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.98 E-value=0.1 Score=38.17 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.3
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.|.-..+.+|++.|+++||+|+++++...
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 49 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRID 49 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCC
Confidence 47888999999999999999999986543
No 44
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=94.44 E-value=0.081 Score=39.14 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCc-CChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 2 SSPHVLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 2 ~~~hvl~~p~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
++++|+++..... ||..+...|+++|.++|++|.++...
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 3568999986555 99999999999999999986666443
No 45
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=94.36 E-value=1.3 Score=31.52 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.1
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
.|+-.-...|++.|.++||+|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 478888999999999999999999886554
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.97 E-value=0.14 Score=36.94 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=34.7
Q ss_pred CeEEEEcCC----CcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 4 PHVLVMPGP----AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 4 ~hvl~~p~p----~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
+||++++-. |.||+.=++.||++|..+|+.++|++.+....
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 367777643 45999999999999999999999999988654
No 47
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.80 E-value=0.13 Score=32.46 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecC
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP 66 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~ 66 (128)
+.+|++.|+++||+|++++........... ..++++..++
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~ 46 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLP 46 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE-
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEecc
Confidence 578999999999999999876554321111 1357777665
No 48
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.72 E-value=0.91 Score=30.38 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=40.0
Q ss_pred HCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHHHhcCCCCCc
Q 040997 29 KHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIENFLQVMPGKLEKLIEEINSREDEKI 108 (128)
Q Consensus 29 ~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (128)
++||+|+|++........ ++++...+...-...........-++...... ..+.+.+.+|++++ ..|
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg-~av~~a~~~L~~~G-f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRG-QAVARAARQLRAQG-FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHcC-CCC
Confidence 479999999955443221 25666666431111111111111122111122 23556667776664 789
Q ss_pred cEEEeCCCcc
Q 040997 109 DCFIADGNMG 118 (128)
Q Consensus 109 d~vI~D~~~~ 118 (128)
|+||.-.-+.
T Consensus 68 DvI~~H~GWG 77 (171)
T PF12000_consen 68 DVIIAHPGWG 77 (171)
T ss_pred CEEEEcCCcc
Confidence 9999987544
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.17 E-value=0.15 Score=37.10 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=30.3
Q ss_pred eEEEEcCCCc-CChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+|+++.+|.. |.-.=+.+|++.|.++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 5666666554 777889999999999999999998754
No 50
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.04 E-value=0.22 Score=35.56 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=26.5
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.|+-+.+..|++.|+.+||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 59999999999999999999999988754
No 51
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=93.03 E-value=0.32 Score=30.10 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=36.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
+|++.+.++-.|-....-++..|.++|++|.++-.....+.+..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 47888999999999999999999999999988766544444333
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=92.59 E-value=0.22 Score=35.22 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=33.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
+|+++.....|+..-+..+++.|.++||+|+++++.....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~ 40 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDEL 40 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcc
Confidence 3677776677889999999999999999999998876543
No 53
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.57 E-value=0.19 Score=32.25 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
|=-.-+.+|+++|+++||+||+++.....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 56678899999999999999999776443
No 54
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=92.08 E-value=0.61 Score=29.17 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=34.8
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIP 66 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~ 66 (128)
+|+++.-...+| ..++++.|..+|++|++++.......... ..++.+..++
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~ 51 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLP 51 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEec
Confidence 366666555566 56889999999999999999555422211 1367777774
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=91.85 E-value=0.39 Score=34.28 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.1
Q ss_pred CCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 12 p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
...|+-.-...+++.|+++||+|+++++...
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred CCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3469999999999999999999999987654
No 56
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=91.76 E-value=0.49 Score=36.19 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCCeEEEEcCC----C-cCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 2 SSPHVLVMPGP----A-QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 2 ~~~hvl~~p~p----~-~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+++||+++.-+ . .|=-+=+.+|++.|.++||+|+++++..
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56789888422 2 2333677899999999999999998764
No 57
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.43 E-value=2.4 Score=29.66 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=28.2
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
.|--.=..+++.-+...|++||+++|+...+.+.+.
T Consensus 39 tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~q 74 (235)
T COG2874 39 TGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQ 74 (235)
T ss_pred ccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHH
Confidence 355556678888889999999999999887655554
No 58
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=91.18 E-value=0.33 Score=34.93 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=28.0
Q ss_pred EEEEcC-C-CcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 6 VLVMPG-P-AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 6 vl~~p~-p-~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|+++.. . ..|+-.....|++.|..+||+|++++..
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 455542 2 3588999999999999999999998754
No 59
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=90.57 E-value=4.9 Score=28.77 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=39.8
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGME 70 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 70 (128)
|.+++|+++.+|+...-. +..+.|.+.|+++.++......+.. .. ...++..-+|.|..
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~-~~-------l~~~DgLvipGGfs 59 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAER-KS-------VSDYDCLVIPGGFS 59 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccc-cc-------hhhCCEEEECCCCC
Confidence 778899999999997654 5578888899999888764321110 00 12466677776643
No 60
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=90.50 E-value=0.47 Score=33.93 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=26.5
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
.|+-.-+..+++.|+++|++|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 489999999999999999999999876543
No 61
>PRK10307 putative glycosyl transferase; Provisional
Probab=90.44 E-value=0.68 Score=34.58 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=26.0
Q ss_pred eEEEEcC---CCcC-ChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPG---PAQG-HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~---p~~G-H~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+|+++.. |-.| =-.-+.+|++.|.++||+|++++++.
T Consensus 2 kIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 2 KILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred eEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCC
Confidence 5677762 3222 11235799999999999999999864
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=89.26 E-value=0.89 Score=32.73 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=31.4
Q ss_pred eEEEEcCC-C-cCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 5 HVLVMPGP-A-QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p-~-~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+|+++... . .|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 57777633 3 58889999999999999999999987654
No 63
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=89.21 E-value=1 Score=33.15 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=26.7
Q ss_pred eEEEEc-CCCc-CChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMP-GPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p-~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+|+++. .... |=-.=+.+||+.|+++||+|+++++..
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 566665 2222 333456999999999999999998753
No 64
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=89.01 E-value=0.91 Score=32.31 Aligned_cols=30 Identities=40% Similarity=0.408 Sum_probs=26.7
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
..|...-...|++.|+++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 459999999999999999999999987654
No 65
>PLN02846 digalactosyldiacylglycerol synthase
Probab=88.82 E-value=0.92 Score=35.11 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCeEEEEc---CCCc-CChHHHHHHHHHHHHCC-CeEEEEeCcc
Q 040997 2 SSPHVLVMP---GPAQ-GHVIPLLEFSQCLAKHG-FRVTFVNTDY 41 (128)
Q Consensus 2 ~~~hvl~~p---~p~~-GH~~P~l~la~~L~~rG-~~Vt~~~t~~ 41 (128)
.++||+++. .|.. |=....+.+++.|+++| |+|+++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 357999987 3443 66577788888999999 7999998753
No 66
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=88.63 E-value=1.8 Score=29.50 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
+.+|++.+.++-.|-....-++..|..+|++|+++-.....+.+...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 46899999999999999999999999999999988766555444443
No 67
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=87.95 E-value=1.5 Score=31.22 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=28.8
Q ss_pred eEEEEcCC-------Cc-CChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 5 HVLVMPGP-------AQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p-------~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+|+++... .. |--.-+.+|++.|.++||+|++++....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 67776532 23 5556789999999999999999987543
No 68
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=87.73 E-value=2.1 Score=29.17 Aligned_cols=47 Identities=23% Similarity=0.128 Sum_probs=40.3
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
+.+|++.+.++-.|-....-++..|.++|++|+++-.....+.+...
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 46899999999999999999999999999999999877666555454
No 69
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=87.54 E-value=2 Score=30.52 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=39.8
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESL 50 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~ 50 (128)
..+++.-.||.|=-.=...+|.+|..+|++|+|++++.....+....
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 46788888998877778899999998899999999998887766653
No 70
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=87.53 E-value=1.4 Score=30.92 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=30.3
Q ss_pred EEEEc--CCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 6 VLVMP--GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 6 vl~~p--~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
|+++. ++..|+-.-+..+++.|.+.|++|++++.....
T Consensus 2 Il~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 2 ILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred eEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 44444 335688899999999999999999999886543
No 71
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=87.22 E-value=13 Score=31.94 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHHCC--CeEEEEeCcch
Q 040997 15 GHVIPLLEFSQCLAKHG--FRVTFVNTDYY 42 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG--~~Vt~~~t~~~ 42 (128)
|+..=.++||++|+++| ++|+++|--..
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~ 225 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVS 225 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcC
Confidence 56677899999999998 89999886543
No 72
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=86.62 E-value=3.8 Score=25.00 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=35.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
++++...+...|-.-+.-++..|.++|++|.++-.....+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 688899999999999999999999999999998655543433
No 73
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=86.16 E-value=2.5 Score=30.45 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
|=-.=..+|++.|..+||+|++++....
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 3345678999999999999999987654
No 74
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=86.07 E-value=2.1 Score=26.91 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=31.6
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
||++.-..+.+=+. ..++.++|.++|++|+++.|+.-.+.+..
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 55555544444444 99999999999999999999887665444
No 75
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=85.40 E-value=2.1 Score=30.72 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=26.2
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
..|.-.-+.+|++.|..+||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 458888889999999999999999988654
No 76
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=85.04 E-value=2.3 Score=27.62 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|++++|++.+...-||=.=.--+++.|++.|++|.....-
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 4688999999886799999999999999999999885443
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.44 E-value=2.2 Score=28.17 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=24.6
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
..|+-.....|++.|.++|++|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999988
No 78
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=84.35 E-value=2.4 Score=29.08 Aligned_cols=41 Identities=10% Similarity=-0.021 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcCChHH-HHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 3 SPHVLVMPGPAQGHVIP-LLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P-~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
..+|++-- .|.....- ..+|.++|.++|++|+++.|+.-.+
T Consensus 5 ~k~IllgV-TGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 5 GKRIGFGL-TGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCEEEEEE-cCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 44555444 45666666 7999999999999999999986553
No 79
>PLN00142 sucrose synthase
Probab=84.25 E-value=13 Score=31.11 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=44.5
Q ss_pred HHHHHHHHCCCeEE----EEeCcchhhhhhhhhcc--CCCCCCCceEEecCCCCCCCC-----CCCCHHHHHHHHHHHch
Q 040997 22 EFSQCLAKHGFRVT----FVNTDYYHKRVVESLQG--KNYLEEQIRLVSIPDGMEPWE-----DRNDFGKLIENFLQVMP 90 (128)
Q Consensus 22 ~la~~L~~rG~~Vt----~~~t~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 90 (128)
+|+++|+++|++|+ ++|=-.....-.....+ ......+.++..+|-+...+. ...+.+.++..+.+.+
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~- 397 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDA- 397 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHH-
Confidence 35578889999775 55432211110000000 001123567777775443221 1122333444333221
Q ss_pred HHHHHHHHHHhcCCCCCccEEEeCCCcc-c-HHHHHHhcC
Q 040997 91 GKLEKLIEEINSREDEKIDCFIADGNMG-W-SLEVAKKMN 128 (128)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~-~-~~~vA~~lg 128 (128)
.+.+.++.. .+||+|..-.-.+ + +..+|+++|
T Consensus 398 --~~~~~~~~~----~~PDlIHaHYwdsg~vA~~La~~lg 431 (815)
T PLN00142 398 --ASEILAELQ----GKPDLIIGNYSDGNLVASLLAHKLG 431 (815)
T ss_pred --HHHHHHhcC----CCCCEEEECCccHHHHHHHHHHHhC
Confidence 222223221 4799999985432 3 455555543
No 80
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=84.23 E-value=4 Score=28.25 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
+.+|++.+.++-.|-....=++-.|.++|++|+++-.......+...
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 46899999999999999999999999999999998876655554443
No 81
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=83.61 E-value=4.3 Score=25.28 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=35.9
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
||++...++-.|-.-..-++..|...|++|.++-.......+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588899999999999999999999999999998776554443
No 82
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=83.57 E-value=3 Score=29.21 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=25.4
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
.|.-.-+..+++.|.++|++|++++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 466677889999999999999999886654
No 83
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=83.55 E-value=2.9 Score=29.35 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=26.7
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
.|+-.-+..|++.|.+.|++|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 689999999999999999999999886543
No 84
>PRK00654 glgA glycogen synthase; Provisional
Probab=82.86 E-value=3 Score=32.04 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=26.1
Q ss_pred eEEEEc---CCC--c-CChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 5 HVLVMP---GPA--Q-GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 5 hvl~~p---~p~--~-GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+|+++. +|. . |.-.=+-.|+++|+++||+|+++++.
T Consensus 2 ~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 2 KILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred eEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 566665 222 3 44455678999999999999999964
No 85
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=81.97 E-value=20 Score=27.66 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=36.0
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
|++---||.|--.=+|+++..|+++| +|-|++.+....++.-
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qikl 137 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKL 137 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH
Confidence 55556789999999999999999999 9999999988776543
No 86
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=81.84 E-value=2.6 Score=29.48 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 16 HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 16 H~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
|+..|-+.|..|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56799999999999999999998883
No 87
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=81.32 E-value=2.1 Score=28.92 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=16.8
Q ss_pred HHHHHHHHHCCCeEEEEeCcc
Q 040997 21 LEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~ 41 (128)
..||+.+..||++||++..+.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 578999999999999998874
No 88
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=81.12 E-value=2.1 Score=31.78 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=25.1
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
..|--.=..+|++.|+++||+||++++..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~ 47 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRAT 47 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEeccc
Confidence 34667889999999999999999999764
No 89
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.90 E-value=4.1 Score=26.07 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=31.9
Q ss_pred eEEEEcCCCc-CChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 5 HVLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
-++++-.|-. --+...+-++.+|-.+|++||+..++.-.+.+
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kLl 47 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLL 47 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhheee
Confidence 3455555554 55667889999999999999999998776543
No 90
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=80.89 E-value=13 Score=24.73 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCcCChHHHHHHHHHH-HHCCCeEEEEeCcch
Q 040997 12 PAQGHVIPLLEFSQCL-AKHGFRVTFVNTDYY 42 (128)
Q Consensus 12 p~~GH~~P~l~la~~L-~~rG~~Vt~~~t~~~ 42 (128)
...||..=|+.|.+.+ ..+....+++.+...
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 5679999999999999 445555556555443
No 91
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=80.76 E-value=32 Score=28.75 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=50.9
Q ss_pred cCChHHHHHHHHH--------HHHCCC----eEEEEeCcchhhhhhhhhcc--CCCCCCCceEEecCCCCCCCC------
Q 040997 14 QGHVIPLLEFSQC--------LAKHGF----RVTFVNTDYYHKRVVESLQG--KNYLEEQIRLVSIPDGMEPWE------ 73 (128)
Q Consensus 14 ~GH~~P~l~la~~--------L~~rG~----~Vt~~~t~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~------ 73 (128)
.|+..=.+++|++ |+++|| +|+++|--.....-.....+ ......+.++..+|.+.+...
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i 358 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNWI 358 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccCCCceEEEEecCCCCccccccccc
Confidence 4666777888886 568999 67787654321110000000 001124677777775443221
Q ss_pred CCCCHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCcc-c-HHHHHHhc
Q 040997 74 DRNDFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMG-W-SLEVAKKM 127 (128)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~-~-~~~vA~~l 127 (128)
...+.+.++..+.+.+ .+.+..+.. .+||+|++-.-.+ + +..+|+++
T Consensus 359 ~k~~l~p~l~~f~~~~---~~~~~~~~~----~~pDlIHahy~d~glva~lla~~l 407 (784)
T TIGR02470 359 SRFEIWPYLETFAEDA---EKEILAELQ----GKPDLIIGNYSDGNLVASLLARKL 407 (784)
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHhcC----CCCCEEEECCCchHHHHHHHHHhc
Confidence 1122333443333221 222222221 4799999866332 3 34444444
No 92
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=79.98 E-value=3.9 Score=30.44 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
|--.-+.+|++.|+.+||+|+++++..
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~ 41 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAY 41 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccC
Confidence 555778999999999999999998753
No 93
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=79.81 E-value=27 Score=27.25 Aligned_cols=45 Identities=9% Similarity=0.159 Sum_probs=39.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
-+++.-.||.|=-.=.++++...+.+|.++.|++.+....++...
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 467777899999999999999999999999999999887766554
No 94
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=79.55 E-value=25 Score=26.69 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHC--CCeEEEEeCcchh
Q 040997 19 PLLEFSQCLAKH--GFRVTFVNTDYYH 43 (128)
Q Consensus 19 P~l~la~~L~~r--G~~Vt~~~t~~~~ 43 (128)
=+.+.++.|.++ |++|+++|+....
T Consensus 19 vl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 19 VLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 456778888887 8999999998554
No 95
>PRK14099 glycogen synthase; Provisional
Probab=78.73 E-value=5.7 Score=30.87 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCCCeEEEEc---CCC--c-CChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMP---GPA--Q-GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p---~p~--~-GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|.+++|+++. .|. . |=-.=+-.|.+.|+++||+|.++.+-
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 7788999886 222 2 33456778999999999999998874
No 96
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=77.82 E-value=6.3 Score=28.27 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=23.9
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.|--.-..+|++.|.++||+|++++....
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~ 38 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGR 38 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCc
Confidence 35557788999999999999999987543
No 97
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=77.49 E-value=14 Score=25.37 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=34.6
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHC-CCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~r-G~~Vt~~~t~~~~~~~~~ 48 (128)
+++...|+.|=-.=+++++..++.+ |..|.|++.+.....+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 3455577889999999999999887 999999999987665444
No 98
>PRK09620 hypothetical protein; Provisional
Probab=76.17 E-value=6.4 Score=27.52 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=27.1
Q ss_pred CCCCeEEEEcCCCcCChHHH------------HHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMPGPAQGHVIPL------------LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~------------l~la~~L~~rG~~Vt~~~t~ 40 (128)
|+..+|++-..|..=.+.|. ..||++|..+|++|+++...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 44556676655543333332 57899999999999988653
No 99
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=75.98 E-value=2.9 Score=31.86 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCc
Q 040997 18 IPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 18 ~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.=+-.|+++|+++||+|+++++.
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecC
Confidence 34567999999999999999964
No 100
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=74.86 E-value=9.4 Score=27.25 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=26.1
Q ss_pred EEEEcCCCc-CChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 6 VLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 6 vl~~p~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
|+++..-.. |--.-+..+++.|.++||+|++++....
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 2 IAYLVKEFPRLSETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 455542222 3445688999999999999999987543
No 101
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=74.70 E-value=26 Score=24.47 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=36.8
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
-|++|-.|+.|=-.=.-.|++-|.+.|++..++......++...
T Consensus 14 ~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~ 57 (222)
T PF01591_consen 14 VIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSG 57 (222)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccc
Confidence 48899999999999999999999999999999998877766433
No 102
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.33 E-value=25 Score=24.04 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
|++..|.++...+.|=....+.+|-+.+.+|.+|.++-.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 345678999999999999999999999999999998643
No 103
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=74.20 E-value=3.6 Score=28.92 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 18 IPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 18 ~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.=+-.|++.|+++||+|+++++.-
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 456689999999999999998764
No 104
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=74.14 E-value=10 Score=23.79 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 18 IPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 18 ~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
...+.|.++-++|||+|.++.....
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 5678899999999999999888755
No 105
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=73.95 E-value=5.7 Score=26.95 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=22.1
Q ss_pred CChH-HHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 15 GHVI-PLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 15 GH~~-P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
|=+. =.-+|+.+|+++|++||+.+.....
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 4443 4457899999999999999876554
No 106
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.68 E-value=6.8 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcch
Q 040997 19 PLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 19 P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.-+++|..|+++|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 458999999999999999877644
No 107
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=73.46 E-value=7.8 Score=27.61 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=27.9
Q ss_pred EEEEc-CC--CcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 6 VLVMP-GP--AQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 6 vl~~p-~p--~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
|+++. ++ ..|--.=...|++.|+.+||+|++++....
T Consensus 2 I~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 2 IALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred eEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 55554 32 246667889999999999999999876544
No 108
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=73.33 E-value=13 Score=22.58 Aligned_cols=43 Identities=26% Similarity=0.195 Sum_probs=34.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
++....++..|-....-++..|.++|++|.++......+.+..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 5666678889999999999999999999999876555444333
No 109
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=72.74 E-value=9.1 Score=29.68 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=29.4
Q ss_pred CeEEEEcCCCcCCh-----HHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMPGPAQGHV-----IPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p~p~~GH~-----~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+|+++| ++|=. ...-+|++.|.+||.+|.|..-|-
T Consensus 307 ~~ViIVP--GYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 307 HSVIITP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CcEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4788887 66654 689999999999999999987653
No 110
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=71.60 E-value=5.7 Score=30.31 Aligned_cols=26 Identities=23% Similarity=0.554 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
||+.|+.-| ++|+..||+|+++....
T Consensus 49 Ghlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 49 GHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred hhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 999999887 67899999999987653
No 111
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=71.46 E-value=12 Score=21.39 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=27.1
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
-++++.-....|..=.-++|+.|+.+|+.|...
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 466666677799999999999999999987643
No 112
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=71.09 E-value=6.3 Score=28.30 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=27.0
Q ss_pred CCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 12 p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
...|.-.-+..+++.|..+|++|++++.....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 34588889999999999999999999876543
No 113
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=70.84 E-value=27 Score=26.55 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=34.6
Q ss_pred EEEEcCCCcCChHHHHHHHHHHH-HCCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~-~rG~~Vt~~~t~~~~~~~~~ 48 (128)
+++...|+.|=-.=++.++..++ ..|..|-|++.+.....+..
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 45555788899999999999998 67999999999877655444
No 114
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.61 E-value=8.2 Score=28.05 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
|++++|+++-..+.| .-+|..|++.||+|+++.-..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 456788988666656 346888999999999987654
No 115
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=70.59 E-value=4.7 Score=30.89 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=26.5
Q ss_pred eEEEEc---CCC--c-CChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMP---GPA--Q-GHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p---~p~--~-GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+|+++. .|. . |=-.=+-.|+++|+++||+|.++++..
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 577766 232 2 333456789999999999999998653
No 116
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=70.17 E-value=9.8 Score=26.80 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=27.6
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
..|+-.-+..+++.|.+.|++|++++......
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~ 44 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGP 44 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCC
Confidence 36888899999999999999999999876543
No 117
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=69.84 E-value=12 Score=26.46 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=27.1
Q ss_pred CCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 11 GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+...|.-..+..|++.|.+.|++|.+++....
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 34468999999999999999999999887543
No 118
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=69.00 E-value=8.4 Score=23.32 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCcchhhh
Q 040997 18 IPLLEFSQCLAKHGFRVTFVNTDYYHKR 45 (128)
Q Consensus 18 ~P~l~la~~L~~rG~~Vt~~~t~~~~~~ 45 (128)
.|.+.+++.|..+|.+|.+.=+-.....
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~ 44 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEE 44 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHH
Confidence 6999999999999999888755444433
No 119
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=68.53 E-value=8.6 Score=21.27 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCeEEEEeCcch
Q 040997 21 LEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+..|..|+++|++|+++=....
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHCCCcEEEEecCcc
Confidence 5678899999999999865543
No 120
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=68.38 E-value=16 Score=26.95 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=33.1
Q ss_pred CCeEEEE-cCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 3 SPHVLVM-PGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 3 ~~hvl~~-p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
++|++=+ -.||.|--.=.-.|+++|..+||+|-++.......
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 3455444 48888999999999999999999999987665443
No 121
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=68.15 E-value=6.5 Score=29.87 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHHHCCC--eEEEEeCc
Q 040997 16 HVIPLLEFSQCLAKHGF--RVTFVNTD 40 (128)
Q Consensus 16 H~~P~l~la~~L~~rG~--~Vt~~~t~ 40 (128)
=-.-+.+|+++|+.+|| +|+++|..
T Consensus 28 ~~~~v~~La~~L~~~G~~~~V~v~t~~ 54 (439)
T TIGR02472 28 QTKYVLELARALARRSEVEQVDLVTRL 54 (439)
T ss_pred cchHHHHHHHHHHhCCCCcEEEEEecc
Confidence 33567899999999997 99999964
No 122
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=68.11 E-value=10 Score=29.53 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=28.6
Q ss_pred CeEEEEcCCCcCCh-----HHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 4 PHVLVMPGPAQGHV-----IPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 4 ~hvl~~p~p~~GH~-----~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.+|+++| |+|=. .+.-+|++.|.++|.+|.|..-|.-
T Consensus 308 ~~VvIVP--GYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA 349 (463)
T PF02233_consen 308 KKVVIVP--GYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVA 349 (463)
T ss_dssp SEEEEEE--SHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTS
T ss_pred CceEEec--CchHHHHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 4788888 55543 6899999999999999999877643
No 123
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=67.75 E-value=7.4 Score=25.12 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 17 VIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 17 ~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
+--.+-|+.+|..+|++|++..+++-.+.+..+
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 345678999999999999999999888766554
No 124
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=67.64 E-value=12 Score=25.18 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=29.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
+|++.-. |..-..-..++.+.|.++|++|.++.|+.-.+.+
T Consensus 3 ~Ill~vt-Gsiaa~~~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 3 NILLAVS-GSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred EEEEEEe-ChHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 4555443 3433445899999999999999999988765443
No 125
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=67.64 E-value=8.7 Score=22.70 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
++++|++|++.|++ ++.|+...+.+..
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~ 28 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKE 28 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHH
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHH
Confidence 57899999999965 7888888877665
No 126
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=66.82 E-value=26 Score=24.63 Aligned_cols=45 Identities=29% Similarity=0.360 Sum_probs=38.7
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
-+++.-.|+.|.-.=.++++...+.+|..|-|++++.....+...
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 467777999999999999999999999999999999876655443
No 127
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=66.12 E-value=11 Score=25.55 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=27.3
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+|++.-..+.|=+.-.+++.++|.+.|++|+++.|+.-.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 344443334444444569999999999999999888654
No 128
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=65.63 E-value=12 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 12 PAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 12 p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
.|.....-..++.++|.++|++|.++.|+.-.+.+
T Consensus 8 tGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 8 TGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 45556667779999999999999999988765443
No 129
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=65.14 E-value=32 Score=23.72 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=41.8
Q ss_pred HCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCCC---CCCHHHHHHHHHHHchHHHHHHHHHHhcCCC
Q 040997 29 KHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWED---RNDFGKLIENFLQVMPGKLEKLIEEINSRED 105 (128)
Q Consensus 29 ~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 105 (128)
..|.+++..+.+...+.+.+.. ++++...+.+++++-. -.+.+++... .......+++++|.....
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~~--------G~~~~~~~S~feEnl~k~~~~~p~~yv~~---tA~~KA~~I~erL~~~Ed 75 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAEM--------GLNLEVVVSTFEENLIKSSFETPEDYVVE---TAKQKAEEIIERLGDGED 75 (209)
T ss_pred hcCcEEEEecCCchHHHHHHHc--------CCceEEEeccchhhchhhccCCHHHHHHH---HHHHHHHHHHHHhhcccc
Confidence 4678888888887777776643 5677776655554321 1223333322 222346777888864332
Q ss_pred CCccEEEe
Q 040997 106 EKIDCFIA 113 (128)
Q Consensus 106 ~~~d~vI~ 113 (128)
+.++.+|+
T Consensus 76 ~~~~~vi~ 83 (209)
T KOG1509|consen 76 SFPDVVIS 83 (209)
T ss_pred CCcccccc
Confidence 33554443
No 130
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=65.03 E-value=17 Score=24.65 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=31.5
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
|+++-..|.|=-.-...||.++..+|.+|.++++..++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 56666788899999999999999999999999998664
No 131
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.01 E-value=16 Score=28.19 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCCc--CChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 2 SSPHVLVMPGPAQ--GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 2 ~~~hvl~~p~p~~--GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
..++|++++.|+- |--+ -.||+|+..|+.++++...
T Consensus 265 ~~P~V~Ilcgpgnnggdg~---v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNGGDGL---VCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCceEEEEeCCCCccchhH---HHHHHHHHcCceeEEEeec
Confidence 4568999998874 3332 2899999999998887655
No 132
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=64.78 E-value=8 Score=29.19 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=21.5
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.||+.|+..+ ++|+..||++.++....
T Consensus 46 lGh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 46 LGHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred HHHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 3999996665 68899999999986543
No 133
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.31 E-value=56 Score=25.45 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=35.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
-|+++-.-|.|-....--||+.|..+|.+|-++....++.
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 4677778888999999999999999999999999987765
No 134
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=63.64 E-value=16 Score=24.59 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=27.6
Q ss_pred cCCCcCChHH-HHHHHHHHH-HCCCeEEEEeCcchhh
Q 040997 10 PGPAQGHVIP-LLEFSQCLA-KHGFRVTFVNTDYYHK 44 (128)
Q Consensus 10 p~p~~GH~~P-~l~la~~L~-~rG~~Vt~~~t~~~~~ 44 (128)
..-|.||... .+++.+.|. ++|++|.++.|+.-.+
T Consensus 5 gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 5 GITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred EEEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 3446688866 889999998 4699999999987664
No 135
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=63.36 E-value=11 Score=26.35 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..||++|+++|++|+++..
T Consensus 30 ~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHhCCCEEEEEEC
Confidence 5788999999999999864
No 136
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=63.23 E-value=14 Score=24.84 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
|-.. ..+|.++|.++|++|.++.|+.-.+.+
T Consensus 11 aa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 11 GVIY-GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 4333 378999999999999999998776554
No 137
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.08 E-value=18 Score=27.48 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+..+|+++ |.|. .- +.+|+.|+.+|++||+.....
T Consensus 4 ~~k~v~ii---G~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVV---GAGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEE---CCCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 34566665 4555 33 499999999999999986653
No 138
>PRK08939 primosomal protein DnaI; Reviewed
Probab=62.50 E-value=25 Score=25.73 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=37.3
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
.+++.-.+|.|=-.=+..+|..|+.+|..|+|++.+.....+...
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 577887888888888889999999999999999998776555443
No 139
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=62.20 E-value=24 Score=26.86 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
+..+|++.- -|.+...-..++.+.|.+.|++|.++.|+.-.+.+
T Consensus 2 ~~k~Illgi-TGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 2 ENKKILLGV-TGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CCCEEEEEE-eCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 445666554 45666677999999999999999999998765543
No 140
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=62.05 E-value=23 Score=21.61 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=28.5
Q ss_pred EEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 8 VMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 8 ~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
++-+...|.-..+++..+.+.++|..|..+|.....
T Consensus 57 vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 57 VIIISYSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp EEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred eEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 333347789999999999999999999777766554
No 141
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=61.75 E-value=10 Score=26.08 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=22.9
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+|.++. +.|+.-. ++.++...|||+||-++-...
T Consensus 2 KIaiIg--AsG~~Gs--~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 2 KIAIIG--ASGKAGS--RILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred eEEEEe--cCchhHH--HHHHHHHhCCCeeEEEEeChH
Confidence 455665 3344332 578888999999999876543
No 142
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=61.75 E-value=34 Score=21.11 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=32.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
||++..-++.|=-.....+++.|+.+|.+|-++-+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999998887765
No 143
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=61.46 E-value=9.2 Score=26.39 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCCCccEEEeCCCc
Q 040997 93 LEKLIEEINSREDEKIDCFIADGNM 117 (128)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~vI~D~~~ 117 (128)
..++.+.+.. +++||||+|+.-
T Consensus 125 ~~ki~e~lp~---r~VdvVlSDMap 146 (232)
T KOG4589|consen 125 YRKIFEALPN---RPVDVVLSDMAP 146 (232)
T ss_pred HHHHHHhCCC---CcccEEEeccCC
Confidence 4555555543 689999999964
No 144
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=60.94 E-value=13 Score=24.53 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
..+|+++..++. -=-=-+.+||+|+++|++|+++..
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 356777775542 001357889999999999999544
No 145
>PRK05595 replicative DNA helicase; Provisional
Probab=60.94 E-value=37 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=34.1
Q ss_pred EEEEcCCCcCChHHHHHHHHHHH-HCCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~-~rG~~Vt~~~t~~~~~~~~~ 48 (128)
+++..-|+.|=-.=+++++..++ .+|..|-|++.+.....+..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 34455788899999999999887 56999999999977655444
No 146
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=60.69 E-value=25 Score=23.41 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=35.4
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
..+++.-.+|.|=-.=...+++++..+|..|-|++.+.....+...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~ 93 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS 93 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc
Confidence 3678888889887777899999999999999999998776665443
No 147
>PRK08760 replicative DNA helicase; Provisional
Probab=60.19 E-value=45 Score=26.07 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=34.3
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHH-CCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~-rG~~Vt~~~t~~~~~~~~~ 48 (128)
+++..-|+.|=-.=++.+|...+. .|..|-|++.+.....+..
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~ 275 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAM 275 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHH
Confidence 455667889999999999999885 4999999999877655443
No 148
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=60.11 E-value=56 Score=24.89 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=34.7
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHH-CCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~-rG~~Vt~~~t~~~~~~~~~ 48 (128)
+++...|+.|=-.=+++++..++. .|..|-|++.+.....+..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 455567888999999999999886 6999999999987665443
No 149
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=59.63 E-value=11 Score=29.39 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=28.7
Q ss_pred CeEEEEcCCCcCChHHH------------HHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMPGPAQGHVIPL------------LEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~------------l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+|++-..|..=-+.|. ..||+.+..||++||+++.+.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 46666666666666554 578899999999999998653
No 150
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=59.53 E-value=27 Score=26.62 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
...+|++.- .|.....=..+|.+.|.++|++|.++.|+.-.+.+
T Consensus 5 ~~k~Illgv-TGsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 5 AGKRIVLGV-SGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCeEEEEE-eCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 345666654 34556667899999999999999999998765543
No 151
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=59.52 E-value=27 Score=20.02 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=26.8
Q ss_pred eEEEEcCCCc--CChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQ--GHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~--GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+|+++|.... .+..-...++..|...|.+|.+-..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 6788886643 4566788899999999999987543
No 152
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=59.37 E-value=15 Score=23.22 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 22 EFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 22 ~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
-+|.+|++.|++|+++......+.+
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~ 36 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAI 36 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhh
Confidence 4788999999999999998833333
No 153
>PRK05920 aromatic acid decarboxylase; Validated
Probab=59.32 E-value=19 Score=24.80 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=31.6
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
.+|++. ..|.....=..++.++|.+.|++|+++.|+.-.+.+
T Consensus 4 krIllg-ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLA-ITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEE-EeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 355544 345555578889999999999999999998766544
No 154
>PRK06179 short chain dehydrogenase; Provisional
Probab=59.31 E-value=29 Score=24.12 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|.+.+.+++.. +.|-+ =.+++++|+++|++|+.+.-.
T Consensus 1 m~~~~~vlVtG-asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 1 MSNSKVALVTG-ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCCCEEEEec-CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 44444455552 44544 368899999999998876643
No 155
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=59.23 E-value=7.4 Score=25.11 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.6
Q ss_pred CCcCChHHHHHHHHHHHH
Q 040997 12 PAQGHVIPLLEFSQCLAK 29 (128)
Q Consensus 12 p~~GH~~P~l~la~~L~~ 29 (128)
|-.|-.||+|+|+-+|+-
T Consensus 57 pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSI 74 (137)
T ss_pred cccCccchhHHHHHHHHH
Confidence 557999999999999874
No 156
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=59.11 E-value=37 Score=22.04 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=33.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+++.-.||.|=-.....+++.++.+|.+|.++..+.+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56677889999999999999999999999999887654
No 157
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=58.79 E-value=12 Score=25.61 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcchhhh
Q 040997 19 PLLEFSQCLAKHGFRVTFVNTDYYHKR 45 (128)
Q Consensus 19 P~l~la~~L~~rG~~Vt~~~t~~~~~~ 45 (128)
=+..|.+.|.+.||+|+++.+....+.
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 366789999778899999999877654
No 158
>PRK08506 replicative DNA helicase; Provisional
Probab=58.77 E-value=55 Score=25.52 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=35.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
+++..-|+.|=-.=++.++...+..|..|.|++.+.....+..
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHH
Confidence 4555678889999999999999889999999999977665444
No 159
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=58.72 E-value=23 Score=24.78 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.6
Q ss_pred cCCCcCCh-HHHHHHHHHHHHC--CCeEEEEeCcchhhhh
Q 040997 10 PGPAQGHV-IPLLEFSQCLAKH--GFRVTFVNTDYYHKRV 46 (128)
Q Consensus 10 p~p~~GH~-~P~l~la~~L~~r--G~~Vt~~~t~~~~~~~ 46 (128)
...|.|+. .=.++|.+.|.++ |++|.++.|+.-.+.+
T Consensus 5 ~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 5 GITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred EEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 33455666 5789999999999 9999999998765443
No 160
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.42 E-value=30 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=33.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
-|+++..+|.|=-.-...||..|+.+|.+|.++....+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 45666778889999999999999999999999988764
No 161
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=57.48 E-value=17 Score=25.58 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=29.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
|++--+|+.|-..=.-+|++.|.+++++|..++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 5666799999999999999999999998766554
No 162
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=57.19 E-value=23 Score=23.13 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
..+|+++- .|.+ -...++.|...|++||++..
T Consensus 13 ~~~vlVvG---GG~v--a~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIG---GGKI--AYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEEC---CCHH--HHHHHHHHHhCCCEEEEEcC
Confidence 34566654 3332 37789999999999999853
No 163
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=57.08 E-value=28 Score=25.42 Aligned_cols=33 Identities=24% Similarity=0.071 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
...+|++.- +.|.+- ..++++|+++|++|+.+.
T Consensus 3 ~~k~ilItG--atG~IG--~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 3 QGKKVLVTG--HTGFKG--SWLSLWLLELGAEVYGYS 35 (349)
T ss_pred CCCEEEEEC--CCChhH--HHHHHHHHHCCCEEEEEe
Confidence 345666665 334333 678999999999998765
No 164
>PRK07236 hypothetical protein; Provisional
Probab=56.79 E-value=16 Score=27.10 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=25.6
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
|+..+|+++-..-.| +.+|..|+++|++|+++=-
T Consensus 4 ~~~~~ViIVGaG~aG-----l~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIGGSLGG-----LFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHHHhCCCCEEEEec
Confidence 566788888744233 6788889999999999853
No 165
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.78 E-value=45 Score=25.78 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=35.1
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
-|+|+-.-|.|-...+-.||..+..+|+++-+++...++.
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 4666778888999999999999999999999999987754
No 166
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=56.66 E-value=28 Score=22.15 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCC-eEEEEeC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFVNT 39 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~-~Vt~~~t 39 (128)
.++++.++....+|..=+-++.++|.++|. ++.++..
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 467888888888999999999999999886 5666655
No 167
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=56.24 E-value=14 Score=26.23 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=19.6
Q ss_pred HHHHHHHHCCCeEEEEeCcchhhhhh
Q 040997 22 EFSQCLAKHGFRVTFVNTDYYHKRVV 47 (128)
Q Consensus 22 ~la~~L~~rG~~Vt~~~t~~~~~~~~ 47 (128)
-+|..|++.||+||++.-......+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~ 30 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALN 30 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHH
Confidence 47889999999999998764443443
No 168
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.10 E-value=16 Score=23.04 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCeEEEEeC
Q 040997 20 LLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t 39 (128)
.+++|++|+.+|++|+..-.
T Consensus 25 ~~~VA~~L~e~g~dv~atDI 44 (129)
T COG1255 25 FLDVAKRLAERGFDVLATDI 44 (129)
T ss_pred HHHHHHHHHHcCCcEEEEec
Confidence 57899999999988766543
No 169
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=56.00 E-value=43 Score=22.44 Aligned_cols=38 Identities=18% Similarity=0.459 Sum_probs=28.3
Q ss_pred CCeEEEEc--CCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 3 SPHVLVMP--GPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 3 ~~hvl~~p--~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+++++.+. -++.|=-.-...||..|+++|.+|.++=..
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34555554 345578888999999999999998887444
No 170
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=55.86 E-value=39 Score=26.17 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=34.8
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
.|+++..+|.|=..-...||..|..+|++|.++....+..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 4677778899999999999999999999999998876643
No 171
>PTZ00445 p36-lilke protein; Provisional
Probab=55.84 E-value=17 Score=25.39 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.1
Q ss_pred CChHH-HHHHHHHHHHCCCeEEEEeCcch
Q 040997 15 GHVIP-LLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 15 GH~~P-~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+|..| +..+.++|...|..|+++|-+..
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56777 88999999999999999988755
No 172
>PRK05973 replicative DNA helicase; Provisional
Probab=55.73 E-value=43 Score=23.62 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=36.9
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
+++..-||.|=-.=.++++...+.+|..|.|++.+.....+...
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 56666789999999999999999999999999999876655443
No 173
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=55.66 E-value=24 Score=20.51 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
++++++.|++.|+++ +.|+...+.+..
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHH
Confidence 468999999999986 566666655543
No 174
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.65 E-value=29 Score=26.80 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=34.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
-|+++-.+|.|=..-...||..|..+|.+|.++++..++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 3566778889999999999999999999999999887653
No 175
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=55.19 E-value=24 Score=25.28 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+++++. .|.| +.|++.+++.|+++|.+|+++....+.
T Consensus 100 ~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 100 TVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred eEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 566665 3334 789999999999999999988765544
No 176
>PRK06904 replicative DNA helicase; Validated
Probab=54.97 E-value=81 Score=24.65 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=34.5
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHH-CCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~-rG~~Vt~~~t~~~~~~~~~ 48 (128)
|++..-|+.|=-.=++.+|...+. .|..|-|++.+.....+..
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~ 267 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMM 267 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 455567889999999999999885 5999999999977665544
No 177
>PRK06849 hypothetical protein; Provisional
Probab=54.73 E-value=40 Score=25.22 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+.+||+.- |-..-.+++++.|.++|++|+.+.+...
T Consensus 4 ~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 4 KKTVLITG----ARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 34566553 2233589999999999999999877643
No 178
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=54.68 E-value=57 Score=21.21 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=35.7
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
+++.-.||.|=-.=.++++...+..|..|.|++++.....+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 4666678889988899999999999999999999877665544
No 179
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=54.68 E-value=6.7 Score=33.10 Aligned_cols=56 Identities=21% Similarity=0.443 Sum_probs=31.9
Q ss_pred CceEEecCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCc
Q 040997 59 QIRLVSIPDGMEPWEDRNDFGKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNM 117 (128)
Q Consensus 59 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~ 117 (128)
.++|-++|.+..+..-..+..+..+.+.+..+..+++.++.++. .+.|++|||...
T Consensus 688 pFRFGTVpngSTE~niR~Nyp~MHeYM~kyNq~~v~dal~sLK~---gKLDAFIyDaAV 743 (1258)
T KOG1053|consen 688 PFRFGTVPNGSTERNIRSNYPEMHEYMVKYNQPGVEDALESLKN---GKLDAFIYDAAV 743 (1258)
T ss_pred CcccccCCCCchhhhHHhccHHHHHHHHHhccCchHHHHHHHhc---ccchhHHHHHHH
Confidence 45555555433222111222233333444444567889999976 689999999643
No 180
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=54.34 E-value=1.2e+02 Score=24.76 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=40.9
Q ss_pred CCeEEEEeCcchhhhhhhhhccC-CCCCCCceEEecCC------CCCCCCC-----CCCHHHHHHHHHHHchHHHHHHHH
Q 040997 31 GFRVTFVNTDYYHKRVVESLQGK-NYLEEQIRLVSIPD------GMEPWED-----RNDFGKLIENFLQVMPGKLEKLIE 98 (128)
Q Consensus 31 G~~Vt~~~t~~~~~~~~~~~~~~-~~~~~~i~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ll~ 98 (128)
.+++-+.+.|..-+...+...+. ....++++|..+-. |...-.+ ..++.+.+..+.+ ....++++.+
T Consensus 226 ~~kIfI~AGE~SGDlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~-l~~~~~~l~~ 304 (608)
T PRK01021 226 NTSCFISAGEHSGDTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFK-LWYRYRKLYK 304 (608)
T ss_pred CCeEEEEeccccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHH-HHHHHHHHHH
Confidence 35676777776654332221110 02235788887642 2221111 1233444444432 3335677777
Q ss_pred HHhcCCCCCccEEEe-CC
Q 040997 99 EINSREDEKIDCFIA-DG 115 (128)
Q Consensus 99 ~l~~~~~~~~d~vI~-D~ 115 (128)
.+.+ .+||++|. |.
T Consensus 305 ~i~~---~kPD~vIlID~ 319 (608)
T PRK01021 305 TILK---TNPRTVICIDF 319 (608)
T ss_pred HHHh---cCCCEEEEeCC
Confidence 7765 58998765 86
No 181
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=54.32 E-value=18 Score=23.56 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=20.8
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+.|++- -.++++|.++|++|+.++-...
T Consensus 6 atG~vG--~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 6 ATGFVG--RALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp TTSHHH--HHHHHHHHHTTSEEEEEESSGG
T ss_pred CCChHH--HHHHHHHHHCCCEEEEEecCch
Confidence 344443 3589999999999999987644
No 182
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=54.20 E-value=47 Score=22.64 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=31.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+++.-.|+.|--.=.++++...+..|.+|.|+.++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45666788899999999999999999999999998
No 183
>PRK13604 luxD acyl transferase; Provisional
Probab=53.91 E-value=46 Score=24.51 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=23.8
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
.+++.....++-.-+..+|+.|+++|+.|..+
T Consensus 39 ~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 39 TILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 44454444566666999999999999887654
No 184
>PRK06321 replicative DNA helicase; Provisional
Probab=53.90 E-value=90 Score=24.45 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=34.5
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHH-CCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~-rG~~Vt~~~t~~~~~~~~~ 48 (128)
|++..-|+.|=-.=++++|+..+. .|..|-|++.+.....+..
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 455667888999999999999985 5899999999877665544
No 185
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=53.76 E-value=29 Score=26.43 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.0
Q ss_pred eEEEEcCCCcCCh-----HHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPGPAQGHV-----IPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~GH~-----~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.|+++| ++|-- .|.-+++++|.++|.+|.|..-|.
T Consensus 310 sVIIvP--GYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPV 349 (463)
T COG1282 310 SVIIVP--GYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPV 349 (463)
T ss_pred eEEEec--CchHHHHhhhhHHHHHHHHHHhcCCeeeEeeccc
Confidence 455555 77654 699999999999999999987663
No 186
>PLN02275 transferase, transferring glycosyl groups
Probab=53.59 E-value=89 Score=23.10 Aligned_cols=57 Identities=12% Similarity=-0.007 Sum_probs=36.2
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCC-eEEEEeCcchhhhhhhhhccCCCCCCCceEEecCC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD 67 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~-~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 67 (128)
++.++..+-.|.---|..+++.|+++|+ +||+++-+...... .. ....+++...++.
T Consensus 6 ~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~-~~-----~~~~~v~v~r~~~ 63 (371)
T PLN02275 6 RAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIP-AL-----LNHPSIHIHLMVQ 63 (371)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCH-HH-----hcCCcEEEEECCC
Confidence 3444444677888888999999999985 79999764432110 11 1123577777754
No 187
>PRK06835 DNA replication protein DnaC; Validated
Probab=53.27 E-value=45 Score=24.73 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=36.2
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
..+++.-.+|.|=..=+..+|+++..+|+.|.|++.......+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 457777778888777788899999999999999999876655433
No 188
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=53.13 E-value=29 Score=24.86 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=33.8
Q ss_pred CCeEEEEcCCCc-CChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCC
Q 040997 3 SPHVLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPW 72 (128)
Q Consensus 3 ~~hvl~~p~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 72 (128)
+++|+++-+||. ++ .+++..|...|.++..+........-. . ...++...+|.++..+
T Consensus 1 kpkV~Vl~~pGtNce----~e~~~A~~~aG~~~~~v~~~dl~~~~~-~-------l~~~~~lvipGGFS~g 59 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCE----RETAAAFENAGFEPEIVHINDLLSGES-D-------LDDFDGLVIPGGFSYG 59 (259)
T ss_dssp --EEEEEE-TTEEEH----HHHHHHHHCTT-EEEEEECCHHHTTS----------GCC-SEEEE-EE-GGG
T ss_pred CCEEEEEECCCCCCH----HHHHHHHHHcCCCceEEEEEecccccC-c-------hhhCcEEEECCccCcc
Confidence 468999999997 44 567888889999999987655432111 1 1356777777665544
No 189
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=53.00 E-value=17 Score=26.14 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
.++|++|++||++|.++.=.
T Consensus 20 ~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 20 AELAKQLARRGYNLILVARR 39 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCc
Confidence 68999999999998887554
No 190
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=52.88 E-value=46 Score=25.61 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=31.5
Q ss_pred CeEEEEc-CCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMP-GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p-~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+-|+++| ..+.+|-.=+.+|+.+++++|+++.+++.-.
T Consensus 126 P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 126 PIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred cEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 5688888 5566888889999999999999999976543
No 191
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=52.61 E-value=41 Score=24.04 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=26.2
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCe
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFR 33 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~ 33 (128)
=|+|--+|..|--.=..+|.+.|.++|++
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 46777799999999999999999999976
No 192
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=52.52 E-value=44 Score=20.31 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCC-eEEEE
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFV 37 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~-~Vt~~ 37 (128)
++.++.++.....|+....++.+++.+++. ++.++
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~ 85 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL 85 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE
Confidence 345555555555566666666666666554 44443
No 193
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=52.48 E-value=98 Score=23.26 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=19.0
Q ss_pred CCCcCChHHHHHHHHHHHHCCCe
Q 040997 11 GPAQGHVIPLLEFSQCLAKHGFR 33 (128)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rG~~ 33 (128)
....|.++-...|+++|.+++.+
T Consensus 57 a~s~Ge~~~~~~l~~~l~~~~~~ 79 (425)
T PRK05749 57 AVSVGETRAAIPLIRALRKRYPD 79 (425)
T ss_pred eCCHHHHHHHHHHHHHHHHhCCC
Confidence 34559999999999999988744
No 194
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=52.42 E-value=75 Score=21.88 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=23.1
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+++++. .+.|.+- ..++++|+++|++|.++...
T Consensus 16 k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 344444 3445554 78899999999999887655
No 195
>PRK06180 short chain dehydrogenase; Provisional
Probab=52.32 E-value=44 Score=23.44 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=22.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
..++|. .+.|.+ =..++++|+++|++|+.+...
T Consensus 5 ~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 334444 345544 467889999999999887653
No 196
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=52.24 E-value=37 Score=24.56 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=34.9
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC--CCeEEEEeCcchhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKR 45 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r--G~~Vt~~~t~~~~~~ 45 (128)
+|+++-..+.|.+.=...+.+.|.++ +.+||+++.+.+...
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l 44 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQI 44 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHH
Confidence 79999999999998888888888875 899999998876543
No 197
>PRK12829 short chain dehydrogenase; Provisional
Probab=52.19 E-value=42 Score=23.07 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+..++++.- +.|.+- ..++++|+++|++|+.+.-.
T Consensus 10 ~~~~vlItG--a~g~iG--~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 10 DGLRVLVTG--GASGIG--RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CCCEEEEeC--CCCcHH--HHHHHHHHHCCCEEEEEeCC
Confidence 344555554 445553 67899999999998777643
No 198
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=52.15 E-value=16 Score=26.23 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
||+.| +...+.|+..||++.++..
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 99999 7788889989999988654
No 199
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=52.05 E-value=33 Score=24.72 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC--CCeEEEEeCcchhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRVV 47 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r--G~~Vt~~~t~~~~~~~~ 47 (128)
+||++-....|.+.=...+.+.|.++ +.+||+++.+.+...+.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 58889988889999999999999986 89999999987765443
No 200
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=51.98 E-value=67 Score=21.20 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=29.7
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
.-|.+...+|.|=....+.+|-+.+.+|.+|.|+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3467778889999999999999999999999993
No 201
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=51.81 E-value=22 Score=27.23 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
||+.|+.. .++|+..||++.++...
T Consensus 50 Ghlv~l~~-l~~lq~~G~~~~~ligd 74 (410)
T PRK13354 50 GHLVPLMK-LKRFQDAGHRPVILIGG 74 (410)
T ss_pred hhHHHHHH-HHHHHHcCCeEEEEEcc
Confidence 99999555 56889999999998744
No 202
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=51.77 E-value=41 Score=24.67 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=36.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC--CCeEEEEeCcchhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r--G~~Vt~~~t~~~~~~~ 46 (128)
+|+++-..+.|.+.=...+.+.|.++ +.+|++++.+.+...+
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~ 45 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLL 45 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHH
Confidence 69999999999999999999999884 8999999987665433
No 203
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=51.23 E-value=51 Score=22.10 Aligned_cols=30 Identities=27% Similarity=0.557 Sum_probs=12.7
Q ss_pred HHHHHHHH-HhcCCCCCccEEEeCCCcccHH
Q 040997 92 KLEKLIEE-INSREDEKIDCFIADGNMGWSL 121 (128)
Q Consensus 92 ~~~~ll~~-l~~~~~~~~d~vI~D~~~~~~~ 121 (128)
.+.+++++ +.-..+.++.|||.|....-..
T Consensus 33 ~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~ 63 (171)
T PF07881_consen 33 AVAELLEENLRYPDGSPVECVIADTTIGGVA 63 (171)
T ss_dssp HHHHHHHHH-B-TTS-B--EEE-SS-B-SHH
T ss_pred HHHHHHHHhcccCCCCeeEEEECCCcccCHH
Confidence 34444443 3333336889999999875443
No 204
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=51.08 E-value=71 Score=21.21 Aligned_cols=39 Identities=8% Similarity=0.147 Sum_probs=25.7
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch-hhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY-HKRVVE 48 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~-~~~~~~ 48 (128)
++++++ +-|.+.| |+++|.++|.+|..+..+.. ...+..
T Consensus 108 ~~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~~ 147 (160)
T TIGR00288 108 AVALVT--RDADFLP---VINKAKENGKETIVIGAEPGFSTALQN 147 (160)
T ss_pred EEEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHHH
Confidence 344444 5677665 56778889999999997653 334433
No 205
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=51.06 E-value=21 Score=24.80 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=21.7
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
|.|++- -.||++|+..||+|++.+.....
T Consensus 8 GtGniG--~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 8 GTGNIG--SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred ccChHH--HHHHHHHHhCCCeEEEecCCChh
Confidence 445443 36789999999999999776553
No 206
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=50.92 E-value=69 Score=22.44 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=34.7
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHC-CCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~r-G~~Vt~~~t~~~~~~~~~ 48 (128)
+++...|+.|--.=++++|..++.+ |+.|.|++.+.....+..
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~ 65 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAA 65 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Confidence 4555678999999999999999997 699999999977655433
No 207
>PLN02891 IMP cyclohydrolase
Probab=50.62 E-value=30 Score=27.56 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCC--CCCC
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPD--GMEP 71 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ 71 (128)
+.+||+.|.+.|.+ +++|....+.+... +|....+.+ ++|+
T Consensus 35 i~~fAk~L~~~gve--IiSTgGTak~L~e~---------Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 35 LALLANGLQELGYT--IVSTGGTASALEAA---------GVSVTKVEELTNFPE 77 (547)
T ss_pred HHHHHHHHHHCCCE--EEEcchHHHHHHHc---------CCceeeHHhccCCch
Confidence 68999999999876 78888888777553 566666553 4443
No 208
>PRK10867 signal recognition particle protein; Provisional
Probab=50.49 E-value=45 Score=25.80 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=34.8
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC-CCeEEEEeCcchhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKR 45 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r-G~~Vt~~~t~~~~~~ 45 (128)
-|+++-.+|.|=..-...||..|..+ |.+|.++....++..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 35666688889999999999999998 999999998876543
No 209
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=50.36 E-value=19 Score=27.57 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
|.+.+||++- .|.|.+.-...|++.+ . +.+||++.-..+
T Consensus 1 ~~~~~iVIlG-gGfgGl~~a~~l~~~~-~-~~~itLVd~~~~ 39 (405)
T COG1252 1 MMKKRIVILG-GGFGGLSAAKRLARKL-P-DVEITLVDRRDY 39 (405)
T ss_pred CCCceEEEEC-CcHHHHHHHHHhhhcC-C-CCcEEEEeCCCc
Confidence 5677888887 7889999999999988 4 899999866544
No 210
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=50.35 E-value=43 Score=22.89 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+..++++.- +.|.+- .+++++|+++|++|..+...
T Consensus 3 ~~~~vlItG--~sg~iG--~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 3 KGKVALVTG--AASGIG--LEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CCCEEEEEC--CCchHH--HHHHHHHHHCCCeEEEEeCC
Confidence 344455443 445553 68999999999998876543
No 211
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=50.34 E-value=11 Score=21.34 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
=-+|...|..+|++||=.|.+...+.+
T Consensus 22 Q~eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 22 QEELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp HHHHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHc
Confidence 357899999999998877766555443
No 212
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=50.24 E-value=25 Score=24.75 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 17 VIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 17 ~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+-+++++.+.|.++|++|-|+|.-.-
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 35889999999999999988888654
No 213
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.23 E-value=17 Score=23.57 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCeEEEEeCcc
Q 040997 22 EFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 22 ~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+|..|+.+||+|++...+.
T Consensus 13 AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 13 ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999875
No 214
>PRK08226 short chain dehydrogenase; Provisional
Probab=50.22 E-value=82 Score=21.68 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCeEEEEeCcc
Q 040997 21 LEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~ 41 (128)
..++++|+++|++|+.+....
T Consensus 20 ~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 20 EGIARVFARHGANLILLDISP 40 (263)
T ss_pred HHHHHHHHHCCCEEEEecCCH
Confidence 458899999999988775443
No 215
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=50.03 E-value=57 Score=23.14 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
|.+.|++.-.-.|.|=-.....||..|+.+|.+|.++-+..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~ 41 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDP 41 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 56656666667788999999999999999999998886653
No 216
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=49.97 E-value=21 Score=25.26 Aligned_cols=33 Identities=36% Similarity=0.593 Sum_probs=26.2
Q ss_pred CeEEEEcCCCc--CChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 4 PHVLVMPGPAQ--GHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 4 ~hvl~~p~p~~--GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
.+|++++-+|- |. -+.+|++|..+|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 47888887664 33 46789999999999999874
No 217
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=49.96 E-value=42 Score=22.88 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 19 PLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 19 P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
=++++|+.|...|+++ +.|+...+.+..
T Consensus 12 ~l~~lAk~L~~lGf~I--~AT~GTAk~L~e 39 (187)
T cd01421 12 GLVEFAKELVELGVEI--LSTGGTAKFLKE 39 (187)
T ss_pred cHHHHHHHHHHCCCEE--EEccHHHHHHHH
Confidence 3678999999999996 577777766655
No 218
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=49.65 E-value=21 Score=24.83 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.6
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 040997 21 LEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~ 38 (128)
..+|++|+.+|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 468899999999999875
No 219
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=49.64 E-value=77 Score=21.23 Aligned_cols=98 Identities=21% Similarity=0.190 Sum_probs=49.0
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch---h--hhhhhhhccCCCCCCCceEEecCCCCCCCCCCCCH
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY---H--KRVVESLQGKNYLEEQIRLVSIPDGMEPWEDRNDF 78 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~---~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (128)
.-|.+....+.|=....+.+|-+-+-+|.+|.++-.-.. . ..+.+.. +++++..+..++... ..+.
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l-------~~~~~~~~g~~f~~~--~~~~ 74 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL-------PNVEIERFGKGFVWR--MNEE 74 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG-------T--EEEE--TT------GGGH
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC-------CeEEEEEcCCccccc--CCCc
Confidence 356777888889999999999999999999999755332 1 1121211 347777765544221 1111
Q ss_pred HHHHHHHHHHchHHHHHHHHHHhcCCCCCccEEEeCCCc
Q 040997 79 GKLIENFLQVMPGKLEKLIEEINSREDEKIDCFIADGNM 117 (128)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~vI~D~~~ 117 (128)
..- ...+...++...+.+.+ ..+|+||.|-..
T Consensus 75 ~~~----~~~~~~~~~~a~~~i~~---~~~dlvILDEi~ 106 (172)
T PF02572_consen 75 EED----RAAAREGLEEAKEAISS---GEYDLVILDEIN 106 (172)
T ss_dssp HHH----HHHHHHHHHHHHHHTT----TT-SEEEEETHH
T ss_pred HHH----HHHHHHHHHHHHHHHhC---CCCCEEEEcchH
Confidence 111 22333344554555543 578999998754
No 220
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=49.53 E-value=48 Score=23.27 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=27.7
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
|.+..=.|.|--.-...||..|+.+|.+|-++
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 55666678899999999999999999998776
No 221
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.49 E-value=51 Score=22.41 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=22.6
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
..+++.- +.|.+- .++++.|+++|++|+.+.-..
T Consensus 6 ~~vlItG--asg~iG--~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 6 KVAIVTG--ASSGIG--EGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred cEEEEEC--CCChHH--HHHHHHHHHCCCEEEEEeCCH
Confidence 3455443 334333 588999999999988776543
No 222
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=49.48 E-value=26 Score=22.10 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 18 IPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 18 ~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
-|++++.-.+.-|||++|++.+.-+...+
T Consensus 10 k~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 10 KALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 47888888888999999999887766543
No 223
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.30 E-value=31 Score=26.85 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
..+|+++-..+.| +.+|+.|.++|++|+..=.
T Consensus 7 ~~~i~v~G~G~sG-----~s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 7 GPMVLVLGLGESG-----LAMARWCARHGARLRVADT 38 (498)
T ss_pred CCEEEEEeecHhH-----HHHHHHHHHCCCEEEEEcC
Confidence 4578888776666 3499999999999988654
No 224
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=48.78 E-value=31 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCCCccEEEeCCCccc--HHHHHHhcC
Q 040997 94 EKLIEEINSREDEKIDCFIADGNMGW--SLEVAKKMN 128 (128)
Q Consensus 94 ~~ll~~l~~~~~~~~d~vI~D~~~~~--~~~vA~~lg 128 (128)
+++++.. .++.-+|.|.|++. ...+|.++|
T Consensus 182 ~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~ 213 (231)
T PF01555_consen 182 ERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELG 213 (231)
T ss_dssp HHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT
T ss_pred HHHHHhh-----hccceeeehhhhccChHHHHHHHcC
Confidence 5555444 46788999999965 466666654
No 225
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=48.76 E-value=86 Score=21.54 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=35.7
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
-+++.-.|+.|--.=..+++...+.+|.+|.|++++.....+..
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 35666788899999999999888889999999999877655444
No 226
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=48.74 E-value=22 Score=26.27 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=14.5
Q ss_pred HHHHHHHHCCCeEEEEeC
Q 040997 22 EFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 22 ~la~~L~~rG~~Vt~~~t 39 (128)
..|++||+||.+|.++.=
T Consensus 64 ayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 64 AYARELAKRGFNVVLISR 81 (312)
T ss_pred HHHHHHHHcCCEEEEEeC
Confidence 578999999999766643
No 227
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=48.71 E-value=20 Score=25.46 Aligned_cols=28 Identities=14% Similarity=-0.126 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
|--.=+.+|++.|+.+|+.|++++....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 4445579999999999999999887644
No 228
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=48.46 E-value=59 Score=19.93 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=25.3
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
..|+++.+... +...++.++.|.+.|.+++++...
T Consensus 10 ~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 10 ADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 45666664443 357788999999999998886543
No 229
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=48.37 E-value=43 Score=23.60 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=35.6
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCC--CeEEEEeCcchhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG--~~Vt~~~t~~~~~~~ 46 (128)
+||++-..+.|.+.=+..+.+.|.++. .+||+++.+.+...+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~ 44 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL 44 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH
Confidence 578888888999999999999999864 899999998765543
No 230
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=48.36 E-value=64 Score=22.60 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=34.1
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC-CCeEEEEeCcchhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r-G~~Vt~~~t~~~~~~~ 46 (128)
-+++...|+.|=-.-+++++..++.. |..|.|++.+.....+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 35566678899999999999999877 9999999998765443
No 231
>PRK05802 hypothetical protein; Provisional
Probab=48.14 E-value=33 Score=25.25 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=27.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+++++. .|.| +.|++.+++.|.++|.+|+++......
T Consensus 174 ~~llIa-GGiG-IaPl~~l~~~l~~~~~~v~li~g~r~~ 210 (320)
T PRK05802 174 KSLVIA-RGIG-QAPGVPVIKKLYSNGNKIIVIIDKGPF 210 (320)
T ss_pred eEEEEE-eEEe-HHHHHHHHHHHHHcCCcEEEEEeCCCH
Confidence 455554 3333 789999999999999899988766544
No 232
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=48.04 E-value=1.1e+02 Score=22.73 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCcchh-hhhhhhhccCCCCCCCceEEecC
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYYH-KRVVESLQGKNYLEEQIRLVSIP 66 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~~~~-~~~~~~~~~~~~~~~~i~~~~~~ 66 (128)
-|+.=+-.+.++|-.+||+|.+.+-+... ..+... .++.+..+.
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~--------yg~~y~~iG 55 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL--------YGIDYIVIG 55 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH--------cCCCeEEEc
Confidence 48888899999999999998877665432 122121 367777764
No 233
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=47.95 E-value=39 Score=25.77 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|...+|.++- .|++- +.+|..|+.+||+|+.+-..
T Consensus 1 m~~~kI~VIG---lG~~G--~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIG---LGYIG--LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEEC---cchhh--HHHHHHHHhCCCEEEEEeCC
Confidence 6666777774 45442 45789999999999988654
No 234
>PRK08181 transposase; Validated
Probab=47.61 E-value=57 Score=23.45 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=34.5
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
..++++-.+|.|=-.=+..+|.++..+|+.|.|++.+.....+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 4688888888877777778899999999999999887655544
No 235
>PRK06841 short chain dehydrogenase; Provisional
Probab=47.44 E-value=89 Score=21.33 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCeEEEEeCcc
Q 040997 21 LEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+++++|+++|++|..+....
T Consensus 29 ~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 29 HAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred HHHHHHHHHCCCEEEEEeCCH
Confidence 678999999999987765543
No 236
>PHA03366 FGAM-synthase; Provisional
Probab=47.44 E-value=1.8e+02 Score=26.11 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCeEEEEcCCCc-CChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCCCC
Q 040997 3 SPHVLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWEDR 75 (128)
Q Consensus 3 ~~hvl~~p~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 75 (128)
+++|+++-+||. |+ .+++++|...|+++..+........-. . .+++...++.|+..++..
T Consensus 1028 ~prVaIl~~pG~N~~----~e~~~Af~~aGf~~~~v~~~dL~~~~~--l-------~~f~glv~~GGFS~gD~l 1088 (1304)
T PHA03366 1028 RHRVAVLLLPGCPGP----HALLAAFTNAGFDPYPVSIEELKDGTF--L-------DEFSGLVIGGSSGAEDSY 1088 (1304)
T ss_pred CCeEEEEECCCCCCH----HHHHHHHHHcCCceEEEEeecCCCCCc--c-------ccceEEEEcCCCCCcccc
Confidence 678999999987 66 578888888999988877654332110 1 356777778777665433
No 237
>PRK08006 replicative DNA helicase; Provisional
Probab=47.38 E-value=1.4e+02 Score=23.44 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHH-CCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~-rG~~Vt~~~t~~~~~~~~~ 48 (128)
|++..-|+.|=-.=.+.+|...+. .|..|-|++.+.....+..
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~ 270 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMM 270 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 455567888999999999999884 6999999999877655443
No 238
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=47.35 E-value=28 Score=24.93 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.6
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.||+.|+. ..++|...|+++.++....
T Consensus 16 LG~~~~~~-~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 16 LGHLVPLM-KLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred HHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 39999976 6788888899999876653
No 239
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=47.34 E-value=66 Score=22.90 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=25.9
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCC---CeEEEEeCcch
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHG---FRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG---~~Vt~~~t~~~ 42 (128)
+++++. .|.| +.|++.+.+.+..++ -+|+++-...+
T Consensus 152 ~~vlIA-gGtG-ItP~~s~l~~~~~~~~~~~~v~l~~g~r~ 190 (283)
T cd06188 152 EMVFIG-GGAG-MAPLRSHIFHLLKTLKSKRKISFWYGARS 190 (283)
T ss_pred cEEEEE-eccc-HhHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 566666 4556 899999999987643 57888765544
No 240
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=47.33 E-value=26 Score=26.63 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=25.6
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
|.+.+||++- .|.+++ ..+++|...+++||++....+
T Consensus 8 ~~~~~vVIvG-gG~aGl----~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLG-TGWAGA----YFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEEC-CCHHHH----HHHHHhCcCCCeEEEEcCCCC
Confidence 3456888887 455554 457788766899999976544
No 241
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=47.27 E-value=50 Score=18.37 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.7
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
+++...+|.|=-.-...|++.|++.|.+|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 345555677888889999999999999987765
No 242
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=47.24 E-value=56 Score=19.84 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=26.4
Q ss_pred CCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 11 GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
....|--.-+++.++...++|.+|..+|.....
T Consensus 53 iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 53 ISQSGETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred EeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 345677778999999999999998888876544
No 243
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=46.98 E-value=51 Score=22.33 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=30.9
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHH-CCCeEEEEeCcchhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~-rG~~Vt~~~t~~~~~~~~~ 48 (128)
+|++.-..+.| ..=..+|.++|.+ .|++|.++.|+.-.+.+..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 45444434444 5668999999998 5999999999877655443
No 244
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=46.93 E-value=33 Score=25.18 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+.+|++|-..-.| +..|..|+++|++|+++--..
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 35578888744447 888999999999999876543
No 245
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=46.86 E-value=20 Score=26.62 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=26.5
Q ss_pred EcCCCc-CChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 9 MPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 9 ~p~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+|+|.. |.-.=+.++.+.|+++ |+||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 567765 8899999999999776 8999988754
No 246
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=46.67 E-value=43 Score=23.81 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=21.6
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+|.++-. |.+- ..+|..|++.|++||++..
T Consensus 2 ~I~IiG~---G~~G--~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 2 KIAILGA---GAIG--GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEEECC---CHHH--HHHHHHHHhCCCeEEEEEC
Confidence 4555543 4333 5678899999999999986
No 247
>PRK06526 transposase; Provisional
Probab=46.61 E-value=32 Score=24.45 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
..+++++-.||.|=-.=+..++.++..+|++|-|.+.......+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 34788888889988888888999999999999888776554444
No 248
>PRK12827 short chain dehydrogenase; Provisional
Probab=46.60 E-value=52 Score=22.29 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
..++++.- +.|-+- ..++++|+++|++|+++.
T Consensus 6 ~~~ilItG--asg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITG--GSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCEEEEEC--CCChHH--HHHHHHHHHCCCeEEEEc
Confidence 34555443 445553 588999999999988754
No 249
>PRK12377 putative replication protein; Provisional
Probab=46.54 E-value=63 Score=22.94 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=36.3
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
.+++.-.||.|=-.=+..+|..|...|..|.|++.+.....+..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE 146 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH
Confidence 57788888998888889999999999999999988876655443
No 250
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=46.47 E-value=50 Score=24.10 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=30.1
Q ss_pred eEEEEc-CCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMP-GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p-~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+++++. -.|.|=-.-...+|-+++++|.+|-++++...+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 455555 455698899999999999999998888887654
No 251
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=45.97 E-value=60 Score=19.75 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=27.9
Q ss_pred EcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 9 MPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 9 ~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+-+...|.-.-+++.++.+.++|..|..+|.....
T Consensus 52 i~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 52 IAISNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 33356688888999999999999998888876554
No 252
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=45.85 E-value=74 Score=21.52 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=22.6
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.+|++. .+.|.+ =..+++.|+++|++|+.+...
T Consensus 7 ~~ilIt--Gasg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 7 RVALVT--GAARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CEEEEc--CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 345443 345655 467889999999998877654
No 253
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=45.68 E-value=37 Score=23.96 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=28.6
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCC--CeEEEEeCcchhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHG--FRVTFVNTDYYHK 44 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG--~~Vt~~~t~~~~~ 44 (128)
|+++. .+.| +.|+..+++++.+.| .+|+++....+.+
T Consensus 110 vllia-gGtG-~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~ 148 (252)
T COG0543 110 VLLIA-GGTG-IAPLYAIAKELKEKGDANKVTLLYGARTAK 148 (252)
T ss_pred EEEEe-cccC-HhHHHHHHHHHHhcCCCceEEEEEeccChh
Confidence 55554 3444 679999999999999 9999998776544
No 254
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.64 E-value=33 Score=26.05 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=26.2
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
|...+|+++-....| ..+|+.|.++|++|+..-
T Consensus 1 ~~~~~i~iiGlG~~G-----~slA~~l~~~G~~V~g~D 33 (418)
T PRK00683 1 MGLQRVVVLGLGVTG-----KSIARFLAQKGVYVIGVD 33 (418)
T ss_pred CCCCeEEEEEECHHH-----HHHHHHHHHCCCEEEEEe
Confidence 677788888876666 348999999999988654
No 255
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=45.35 E-value=65 Score=23.17 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=32.2
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC-C-CeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH-G-FRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r-G-~~Vt~~~t~~~~ 43 (128)
-|+++-..|.|=-.-...||..++.+ | ++|.++++..+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 45566667789999999999999986 6 999999988754
No 256
>PLN02240 UDP-glucose 4-epimerase
Probab=45.15 E-value=63 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
...+|++.- +.|.+- ..|+++|.++|++|+.+.
T Consensus 4 ~~~~vlItG--atG~iG--~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 4 MGRTILVTG--GAGYIG--SHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCEEEEEC--CCChHH--HHHHHHHHHCCCEEEEEe
Confidence 344666543 556653 356899999999999875
No 257
>PRK09072 short chain dehydrogenase; Provisional
Probab=44.88 E-value=60 Score=22.43 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=22.3
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
..+++.- +.|.+- .+++++|+++|++|+++.-.
T Consensus 6 ~~vlItG--~s~~iG--~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTG--ASGGIG--QALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEEC--CCchHH--HHHHHHHHHCCCEEEEEECC
Confidence 3444443 444443 68899999999999887654
No 258
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=44.86 E-value=27 Score=24.97 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
+..|..|+++|++||++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 45788999999999999776
No 259
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=44.80 E-value=30 Score=24.97 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=24.3
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.||..+.+...+.|+..|+++.++....
T Consensus 14 LG~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 14 LGHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 3999999999999999999999987654
No 260
>PRK14974 cell division protein FtsY; Provisional
Probab=44.71 E-value=64 Score=24.05 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=33.2
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
-|+++-.+|.|=-.-+..||..|..+|++|.++.+..+
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 46777789999999999999999999999999877654
No 261
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=44.61 E-value=66 Score=22.58 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=27.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
.|.+..=.|.|=-.-...||..|+++|++|-++
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 355666667788899999999999999998876
No 262
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=44.45 E-value=25 Score=24.38 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.3
Q ss_pred HHHHHHHHHCCCeEEEEeCcch
Q 040997 21 LEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
..+|+.|++.||+|+.+-....
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCHH
Confidence 5789999999999999866544
No 263
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=44.44 E-value=86 Score=22.57 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCCCcCC-----hHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMPGPAQGH-----VIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH-----~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|.+.+|.++.- |.++ +...-.+++.|.+.||+|.++...
T Consensus 1 ~~~~~i~vl~g-g~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~ 44 (296)
T PRK14569 1 MKNEKIVVLYG-GDSPEREVSLKSGKAVLDSLISQGYDAVGVDAS 44 (296)
T ss_pred CCCcEEEEEeC-CCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 77788888874 4333 467888999999999999887543
No 264
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.37 E-value=74 Score=24.59 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=34.2
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHH-HCCCeEEEEeCcchhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLA-KHGFRVTFVNTDYYHKR 45 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~-~rG~~Vt~~~t~~~~~~ 45 (128)
-|+++..+|.|=..-...||..|. .+|.+|.++....++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 356677888999999999999997 58999999998876543
No 265
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=44.31 E-value=2.4 Score=20.53 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.2
Q ss_pred cCCCcCChHHHHHHH
Q 040997 10 PGPAQGHVIPLLEFS 24 (128)
Q Consensus 10 p~p~~GH~~P~l~la 24 (128)
.||+||-.||-+++-
T Consensus 17 TFPGqGP~NPKir~P 31 (39)
T PF08026_consen 17 TFPGQGPFNPKIRWP 31 (39)
T ss_pred cCCCCCCCCcccccc
Confidence 478899888876553
No 266
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=44.16 E-value=46 Score=22.64 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
..+|+++-+...| ..+++.|.+.|++|++.-
T Consensus 28 gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 28 GKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEc
Confidence 3466666554333 568999999999998543
No 267
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=44.07 E-value=38 Score=28.23 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
-.||+|+-..+.| |-.||+.|.++|++|+..=
T Consensus 4 ~~~i~viG~G~sG----~salA~~L~~~G~~V~~sD 35 (809)
T PRK14573 4 SLFYHFIGIGGIG----MSALAHILLDRGYSVSGSD 35 (809)
T ss_pred cceEEEEEecHHh----HHHHHHHHHHCCCeEEEEC
Confidence 3578888888877 6667999999999998753
No 268
>PLN02316 synthase/transferase
Probab=44.04 E-value=29 Score=29.96 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=29.2
Q ss_pred CCeEEEEc---CCC--cCChHH-HHHHHHHHHHCCCeEEEEeCcch
Q 040997 3 SPHVLVMP---GPA--QGHVIP-LLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 3 ~~hvl~~p---~p~--~GH~~P-~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.+||+++. .|. .|=+.- +-.|+++|+++||+|.++++...
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 35888876 232 355543 46899999999999999988643
No 269
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.04 E-value=1.1e+02 Score=21.20 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.6
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 040997 21 LEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~ 38 (128)
..+|++|+++|++|.+..
T Consensus 23 ~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 23 WGCAQAIKDQGATVIYTY 40 (252)
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 789999999999988763
No 270
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=43.81 E-value=74 Score=19.32 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=26.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
|++++ ...|.-.-+..+++.|+++|+.|..+..+..
T Consensus 2 vv~~H-G~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 37 (145)
T PF12695_consen 2 VVLLH-GWGGSRRDYQPLAEALAEQGYAVVAFDYPGH 37 (145)
T ss_dssp EEEEC-TTTTTTHHHHHHHHHHHHTTEEEEEESCTTS
T ss_pred EEEEC-CCCCCHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 34444 3345567789999999999999888865433
No 271
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=43.58 E-value=84 Score=21.67 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=20.6
Q ss_pred eEEEEcCC-CcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 5 HVLVMPGP-AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 5 hvl~~p~p-~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.|+++.=. -.+...+..+--++|..+|.+|.++++.
T Consensus 152 ~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 152 TVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred EEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 45555543 3455566666666666666666666655
No 272
>PRK06128 oxidoreductase; Provisional
Probab=43.47 E-value=1.2e+02 Score=21.62 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|.+...
T Consensus 69 ~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 69 RATAIAFAREGADIALNYL 87 (300)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 5789999999999977543
No 273
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=43.41 E-value=6.9 Score=20.17 Aligned_cols=10 Identities=50% Similarity=0.923 Sum_probs=8.1
Q ss_pred CCCcCChHHH
Q 040997 11 GPAQGHVIPL 20 (128)
Q Consensus 11 ~p~~GH~~P~ 20 (128)
|||-||+.|.
T Consensus 35 ~PGn~hlQP~ 44 (45)
T PF08384_consen 35 FPGNGHLQPL 44 (45)
T ss_pred cCCCcccCCC
Confidence 6899999874
No 274
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=43.35 E-value=29 Score=23.37 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=27.1
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.+.++| |+.|+......|++.|..++..|..+-.+..
T Consensus 2 ~lf~~p-~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~ 38 (229)
T PF00975_consen 2 PLFCFP-PAGGSASSYRPLARALPDDVIGVYGIEYPGR 38 (229)
T ss_dssp EEEEES-STTCSGGGGHHHHHHHTTTEEEEEEECSTTS
T ss_pred eEEEEc-CCccCHHHHHHHHHhCCCCeEEEEEEecCCC
Confidence 355555 7889999999999999987555555554443
No 275
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=43.25 E-value=92 Score=21.12 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=15.5
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
|+|+..++.-|--=+...+++|...|.+|.++.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 444444444444344455555555555554443
No 276
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=43.17 E-value=30 Score=25.29 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.0
Q ss_pred HHHHHHHHCCCeEEEEeCcch
Q 040997 22 EFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 22 ~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+|+.+|...||+||+++=...
T Consensus 13 ~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 13 ALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred HHHHHHHhCCCeEEEEEcCCc
Confidence 577788889999999986544
No 277
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=43.15 E-value=53 Score=19.22 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHH--CCCeEEEEeCcchh
Q 040997 17 VIPLLEFSQCLAK--HGFRVTFVNTDYYH 43 (128)
Q Consensus 17 ~~P~l~la~~L~~--rG~~Vt~~~t~~~~ 43 (128)
+.|++.+.+.+.. .+.+|+++-...+.
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~ 36 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTP 36 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEccc
Confidence 7899999999994 56899998665543
No 278
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=43.10 E-value=51 Score=24.14 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=23.2
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+.|=-.-+..+++.|.+.||+|++++...
T Consensus 11 ~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 11 GGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 33555667799999999999999987644
No 279
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=43.06 E-value=37 Score=26.33 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 16 HVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 16 H~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
|+..|-+++.+|.++|++|++...+.
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 34689999999999999999988777
No 280
>PRK07577 short chain dehydrogenase; Provisional
Probab=43.04 E-value=58 Score=21.90 Aligned_cols=35 Identities=37% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
|...++++.- +.|-+- ..++++|+++|++|+.+.-
T Consensus 1 ~~~k~vlItG--~s~~iG--~~ia~~l~~~G~~v~~~~r 35 (234)
T PRK07577 1 MSSRTVLVTG--ATKGIG--LALSLRLANLGHQVIGIAR 35 (234)
T ss_pred CCCCEEEEEC--CCCcHH--HHHHHHHHHCCCEEEEEeC
Confidence 4445555543 334332 4678999999999887654
No 281
>PLN00016 RNA-binding protein; Provisional
Probab=42.84 E-value=29 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=23.8
Q ss_pred CeEEEEc--CCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMP--GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p--~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+|+++. ..+.|-+- ..|+++|..+||+|+.++-..
T Consensus 53 ~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 3577761 12334443 467899999999999987543
No 282
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=42.84 E-value=37 Score=22.40 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=25.2
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+|+++- ..=++.+-+.||++|..+|.+|.|=+|
T Consensus 59 ~vLVLG--TgEfMy~Pl~lA~~Le~~g~~V~~qST 91 (155)
T PF12500_consen 59 RVLVLG--TGEFMYLPLLLAEELEQAGADVRYQST 91 (155)
T ss_pred cEEEEc--cchHHHHHHHHHHHHHhcCCceEEeCC
Confidence 455543 334678999999999999999998555
No 283
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=42.82 E-value=1.1e+02 Score=21.03 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|..+..
T Consensus 24 ~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 24 QGMALGLAEAGCDIVGINI 42 (253)
T ss_pred HHHHHHHHHCCCEEEEecC
Confidence 5788999999999886643
No 284
>PLN02939 transferase, transferring glycosyl groups
Probab=42.81 E-value=70 Score=27.56 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCeEEEEc-----CCCcCChH-HHHHHHHHHHHCCCeEEEEeCcc
Q 040997 3 SPHVLVMP-----GPAQGHVI-PLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 3 ~~hvl~~p-----~p~~GH~~-P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+||+++. +.-.|=+- =+-.|.++|+.+||+|.++++..
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 35888875 33245554 45579999999999999998854
No 285
>PRK07806 short chain dehydrogenase; Provisional
Probab=42.73 E-value=74 Score=21.65 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.5
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|+.+.-
T Consensus 20 ~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 20 ADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5678999999999987653
No 286
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=42.68 E-value=61 Score=22.37 Aligned_cols=39 Identities=8% Similarity=0.250 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+++++.+++....|+..+.++.++|...|.++.++....
T Consensus 139 ~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~ 177 (213)
T cd02069 139 KADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGA 177 (213)
T ss_pred CCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEECh
Confidence 578899999999999999999999999998888766653
No 287
>PRK04148 hypothetical protein; Provisional
Probab=42.63 E-value=33 Score=22.02 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=21.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+|+.+-.. .| ..+|+.|++.|++|+.+=....
T Consensus 19 kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHH
Confidence 45555533 33 3578899999999988755443
No 288
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.38 E-value=51 Score=25.70 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
|...+|++|-..--| |.-|..|+++|++|+++=
T Consensus 1 ~~~~dvvVIGaG~~G-----L~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 1 MPMYDVVVIGAGLNG-----LAAAALLARAGLKVTVLE 33 (487)
T ss_pred CCCccEEEECCChhH-----HHHHHHHHhCCCEEEEEE
Confidence 556677777632223 556788899999999974
No 289
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=42.31 E-value=67 Score=22.11 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=22.3
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.++++.- +.|-+- ..++++|+++|++|+.+...
T Consensus 13 k~ilItG--a~g~IG--~~la~~l~~~G~~V~~~~r~ 45 (259)
T PRK08213 13 KTALVTG--GSRGLG--LQIAEALGEAGARVVLSARK 45 (259)
T ss_pred CEEEEEC--CCchHH--HHHHHHHHHcCCEEEEEeCC
Confidence 4455554 444443 67999999999998776543
No 290
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=42.23 E-value=74 Score=22.98 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=28.7
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
|.+.-=.|.|=-.-.+.||..|+++|.+|-++
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 77777788899999999999999999998776
No 291
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=42.00 E-value=75 Score=22.13 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=29.7
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.+|.+=..||.|-..-||+=|++|.++|.+|.+-..+..
T Consensus 6 LkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 6 LKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 367777789999999999999999999999998655543
No 292
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.96 E-value=89 Score=24.31 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=34.2
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
.|+++-..|.|=..-+..||..|..+|.+|.++++..++
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 567777788899999999999999999999999987654
No 293
>PRK07952 DNA replication protein DnaC; Validated
Probab=41.79 E-value=81 Score=22.31 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=35.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVV 47 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~ 47 (128)
.+++.-.+|.|=-.=+..+|..|..+|..|.+++.......+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~ 143 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK 143 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH
Confidence 4677778888888888899999999999999998876655443
No 294
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.78 E-value=87 Score=21.27 Aligned_cols=32 Identities=22% Similarity=0.097 Sum_probs=21.6
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
.++++.- +.|.+ =..++++|+++|++|++...
T Consensus 7 ~~vlitG--asg~i--G~~l~~~l~~~g~~v~~~~~ 38 (252)
T PRK06077 7 KVVVVTG--SGRGI--GRAIAVRLAKEGSLVVVNAK 38 (252)
T ss_pred cEEEEeC--CCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 3455444 44444 27889999999999877553
No 295
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.69 E-value=65 Score=18.11 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=27.3
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.|++++. ..++..-.+.+++.|.+.|.+|.+-...
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~~ 37 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLRN 37 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 5666664 5678888999999999999999885443
No 296
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=41.68 E-value=72 Score=22.04 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=30.2
Q ss_pred EEEcCCCcCChHHHHHHHHHHHH------------CCCeEEEEeCcchhhhhhh
Q 040997 7 LVMPGPAQGHVIPLLEFSQCLAK------------HGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 7 l~~p~p~~GH~~P~l~la~~L~~------------rG~~Vt~~~t~~~~~~~~~ 48 (128)
+++-.|+.|=-.=++++|..++. ++-+|.|++.+...+.+..
T Consensus 5 ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~ 58 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHR 58 (239)
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHH
Confidence 44556777888888888887663 4678999999987654433
No 297
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=41.68 E-value=15 Score=26.00 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=15.4
Q ss_pred cCChHHHHHHHHHHHHC
Q 040997 14 QGHVIPLLEFSQCLAKH 30 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~r 30 (128)
.||+||.+.+|..+..+
T Consensus 67 GaH~NPAVT~a~~~~~~ 83 (238)
T KOG0223|consen 67 GAHFNPAVTLAFAVGGK 83 (238)
T ss_pred ccccCHHHHHHHHHhCC
Confidence 49999999999999877
No 298
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=41.60 E-value=77 Score=21.56 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 89 MPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
..+.+.++++.+.+. ...+||++.+-.++..+++++|
T Consensus 69 l~pga~ell~~lk~~---~~~~IVS~~~~~~~~~il~~lg 105 (203)
T TIGR02137 69 PLEGAVEFVDWLRER---FQVVILSDTFYEFSQPLMRQLG 105 (203)
T ss_pred CCccHHHHHHHHHhC---CeEEEEeCChHHHHHHHHHHcC
Confidence 444578888888762 3678889998889999999876
No 299
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=41.55 E-value=32 Score=26.09 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=21.3
Q ss_pred CChHHHH---HHHHHHHHCCCeEEEEeCcchh
Q 040997 15 GHVIPLL---EFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 15 GH~~P~l---~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
||+.|.+ -++|.+..+|++|-|++....+
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtDeh 48 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTDEH 48 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecchh
Confidence 9999766 4677777899999998876544
No 300
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=41.54 E-value=59 Score=23.90 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=36.8
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHC--CCeEEEEeCcchhhhh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRV 46 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~r--G~~Vt~~~t~~~~~~~ 46 (128)
.+||++-.-..|.+.=...+.+.|.++ +.+|++++.+.+...+
T Consensus 6 ~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 6 RRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred ceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 489999999999999999999999886 7999999988766543
No 301
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=41.51 E-value=22 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcch
Q 040997 19 PLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 19 P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
++++|.+.+.++|.+|.|+|.-.-
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~~ 142 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRPE 142 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEET
T ss_pred HHHHHHHHHHHCCCeEEEEecCCc
Confidence 489999999999999999988543
No 302
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=41.28 E-value=36 Score=26.03 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=21.7
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
||.|+-..+.| |-.+|+.|+++|++|+..=
T Consensus 1 ~~~~iGiggsG----m~~la~~L~~~G~~v~~~D 30 (448)
T TIGR01082 1 KIHFVGIGGIG----MSGIAEILLNRGYQVSGSD 30 (448)
T ss_pred CEEEEEECHHH----HHHHHHHHHHCCCeEEEEC
Confidence 35555555555 5569999999999998743
No 303
>PRK11914 diacylglycerol kinase; Reviewed
Probab=41.11 E-value=84 Score=22.67 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=24.9
Q ss_pred eEEEEcCCCcCCh-HHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPGPAQGHV-IPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~GH~-~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
-+++-|..+.|.- .-.-++.+.|.++|++++++.|..
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4555566666663 345578888999999988766543
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=40.92 E-value=1.1e+02 Score=21.19 Aligned_cols=44 Identities=23% Similarity=0.164 Sum_probs=35.7
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
-+++.-.|+.|--.=.++++..-+.+|-.+.|++++.....+..
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 46667788899998888888877789999999999987665444
No 305
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=40.76 E-value=90 Score=19.88 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=26.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
.|.++-+...|=-.=+..|.+.|.++|.+|.++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 466777777888899999999999999998854
No 306
>PRK14098 glycogen synthase; Provisional
Probab=40.74 E-value=35 Score=26.63 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=26.4
Q ss_pred CeEEEEc-----CCCc-CChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMP-----GPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p-----~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
++|+++. +.=. |=-.=+-.|.+.|+++||+|.++.+.
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5677765 2212 33355678999999999999998874
No 307
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=40.71 E-value=68 Score=24.00 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=27.1
Q ss_pred CCeEEEEcCC-CcCChHHHHHHHHHHHHCCC---eEEEE
Q 040997 3 SPHVLVMPGP-AQGHVIPLLEFSQCLAKHGF---RVTFV 37 (128)
Q Consensus 3 ~~hvl~~p~p-~~GH~~P~l~la~~L~~rG~---~Vt~~ 37 (128)
.++||+++.. |.||....-.|.+.|..+|. +|.++
T Consensus 5 ~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 4589998844 45999999999999998863 45543
No 308
>PRK08840 replicative DNA helicase; Provisional
Probab=40.42 E-value=1.8e+02 Score=22.77 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=34.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHH-CCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~-rG~~Vt~~~t~~~~~~~~~ 48 (128)
+++..-|+.|=-.=++.+|...+. .|..|-|++.+.....+..
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~ 263 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMM 263 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHH
Confidence 455567888999999999999985 5999999999977665444
No 309
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.40 E-value=72 Score=20.90 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=27.6
Q ss_pred EcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 9 MPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 9 ~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+.+...|--.-+++.++.+.++|..|..+|.....
T Consensus 77 I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 77 IAISGSGETESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred EEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 33345678888999999999999998888876554
No 310
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=40.38 E-value=69 Score=22.55 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=30.7
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+++..-+|.|--.-...+|..++++|.+|-++.+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3444567789999999999999999999988887654
No 311
>PRK06914 short chain dehydrogenase; Provisional
Probab=40.31 E-value=97 Score=21.57 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|+..++++.- +.|-+ -..+++.|+++|++|+.+...
T Consensus 1 ~~~k~~lItG--asg~i--G~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 1 MNKKIAIVTG--ASSGF--GLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCCCEEEEEC--CCchH--HHHHHHHHHhCCCEEEEEeCC
Confidence 4544444443 44444 467889999999999887543
No 312
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=40.26 E-value=93 Score=20.18 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=27.7
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
|.++-+.+.|=-.=+..|.++|..+|++|.++-.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~ 35 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKH 35 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4556677888888888999999999999988754
No 313
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=40.22 E-value=49 Score=24.08 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=31.8
Q ss_pred CeEEEEc-CCCcCCh--------HHHHHHHHHHHHCCCeEEEEeCcchhhhhhhh
Q 040997 4 PHVLVMP-GPAQGHV--------IPLLEFSQCLAKHGFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 4 ~hvl~~p-~p~~GH~--------~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~ 49 (128)
.+|+++. ||. .|. .=.+.||+.|.+.|.+|++++-+.....+.+.
T Consensus 41 ~~VlI~TGFpv-~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~ 94 (291)
T PF14336_consen 41 KSVLIVTGFPV-PPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAA 94 (291)
T ss_pred CcEEEEeCCCC-CCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHH
Confidence 4666666 333 232 23678999999999999999998776654443
No 314
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=40.21 E-value=79 Score=23.29 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=29.0
Q ss_pred CeEEEEcCCC-cCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 4 PHVLVMPGPA-QGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 4 ~hvl~~p~p~-~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
++|+++-.=. .|=..-.+.|.+.|.+||.++.|+.|...
T Consensus 113 ~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQT 152 (301)
T PF07755_consen 113 KRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQT 152 (301)
T ss_dssp EEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHH
T ss_pred CEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCc
Confidence 4566665433 59999999999999999999999988754
No 315
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=40.16 E-value=80 Score=19.12 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=25.5
Q ss_pred CCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 11 GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+...|.--.++++++.+..+|..+..+|.....
T Consensus 67 iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 67 ISFSGETKETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 345667778899999999999998777776543
No 316
>PRK06182 short chain dehydrogenase; Validated
Probab=40.08 E-value=1e+02 Score=21.44 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
|+...+++.- +.|.+ =..++++|+++|++|..+.-
T Consensus 1 ~~~k~vlItG--asggi--G~~la~~l~~~G~~V~~~~r 35 (273)
T PRK06182 1 MQKKVALVTG--ASSGI--GKATARRLAAQGYTVYGAAR 35 (273)
T ss_pred CCCCEEEEEC--CCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 5555555444 33433 35689999999999887654
No 317
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=40.03 E-value=47 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 16 HVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 16 H~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.+-++++|.+.|.++|++|-|+|.-.-
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 456999999999999999999888653
No 318
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=40.02 E-value=60 Score=22.12 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
..+|+++-. |-+- ...++.|...|++||++...
T Consensus 10 ~k~vLVIGg---G~va--~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGG---GKVA--GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECC---CHHH--HHHHHHHHHCCCeEEEEcCC
Confidence 345666643 3332 56788899999999998654
No 319
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=39.94 E-value=43 Score=24.91 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
|+...|+++-..-.| +.+|..|+++|++||++=
T Consensus 1 ~~~~dv~IvGgG~aG-----l~~A~~L~~~G~~v~l~E 33 (384)
T PRK08849 1 MNKYDIAVVGGGMVG-----AATALGFAKQGRSVAVIE 33 (384)
T ss_pred CCcccEEEECcCHHH-----HHHHHHHHhCCCcEEEEc
Confidence 555567776533234 567777889999999986
No 320
>PRK04280 arginine repressor; Provisional
Probab=39.72 E-value=26 Score=22.87 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=20.5
Q ss_pred HHHHHHHHHCCCeEEEEeCcchhhh
Q 040997 21 LEFSQCLAKHGFRVTFVNTDYYHKR 45 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~~~~~ 45 (128)
-+|.+.|..+|++||=.|.+...+.
T Consensus 22 eeL~~~L~~~Gi~vTQATiSRDike 46 (148)
T PRK04280 22 DELVDRLREEGFNVTQATVSRDIKE 46 (148)
T ss_pred HHHHHHHHHcCCCeehHHHHHHHHH
Confidence 4789999999999998888766553
No 321
>PRK05636 replicative DNA helicase; Provisional
Probab=39.55 E-value=1.4e+02 Score=23.62 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=33.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHH-CCCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAK-HGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~-rG~~Vt~~~t~~~~~~~~~ 48 (128)
|++..-|+.|=-.=++.+|...+. +|..|.|++.+.....+..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~ 311 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVM 311 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHH
Confidence 455667888988889999998874 5889999988877655443
No 322
>PRK08628 short chain dehydrogenase; Provisional
Probab=39.50 E-value=1.2e+02 Score=20.69 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCeEEEEeCcc
Q 040997 21 LEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+++++|+++|.+|+++....
T Consensus 21 ~~la~~l~~~G~~v~~~~r~~ 41 (258)
T PRK08628 21 AAISLRLAEEGAIPVIFGRSA 41 (258)
T ss_pred HHHHHHHHHcCCcEEEEcCCh
Confidence 678999999999998875543
No 323
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=39.46 E-value=64 Score=23.42 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=34.6
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC--CCeEEEEeCcchhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKR 45 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r--G~~Vt~~~t~~~~~~ 45 (128)
+|+++-..+.|.+.=...+.+.|.+. +.+||+++.+.+...
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l 43 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPL 43 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHH
Confidence 58899988999999999999999875 899999998766543
No 324
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=39.45 E-value=35 Score=19.90 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCcc
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+-.+.+.|.++|++|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578899999999999888766
No 325
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=39.34 E-value=1e+02 Score=22.19 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCCCeEE-EEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 1 MSSPHVL-VMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 1 m~~~hvl-~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
|.+++++ |..-.|.|=-+-...||-.|+++|.+|-++
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 4555444 445566688899999999999999998887
No 326
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.33 E-value=1.8e+02 Score=22.39 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=43.3
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch--hhhhhhhhccCCCCCCCceEEecCC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY--HKRVVESLQGKNYLEEQIRLVSIPD 67 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~--~~~~~~~~~~~~~~~~~i~~~~~~~ 67 (128)
+.|++++...-.||--=|--=|.-|+..|++|+++.--.. ...+.. .++|+++.++.
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~--------hprI~ih~m~~ 70 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN--------HPRIRIHGMPN 70 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc--------CCceEEEeCCC
Confidence 4588888888889998888889999999999999754333 333333 26899998864
No 327
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=39.30 E-value=37 Score=25.93 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..+|++|+.+|++|+++..+
T Consensus 218 ~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 218 YALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHCCCEEEEeCCC
Confidence 56899999999999998654
No 328
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=39.21 E-value=53 Score=22.33 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCCCCccEEEeC
Q 040997 94 EKLIEEINSREDEKIDCFIAD 114 (128)
Q Consensus 94 ~~ll~~l~~~~~~~~d~vI~D 114 (128)
+++++.+.+ .+|||||.|
T Consensus 37 ~~~~~~~~~---~~pDlvLlD 54 (207)
T PRK15411 37 DDLAIACDS---LRPSVVFIN 54 (207)
T ss_pred HHHHHHHhc---cCCCEEEEe
Confidence 444444432 467888888
No 329
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=39.18 E-value=42 Score=25.09 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
|...+|+++-..-.| +.+|-.|+++|++|+++=-
T Consensus 2 m~~~dV~IvGaG~~G-----l~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 2 MQSVDVAIIGGGMVG-----LALAAALKESDLRIAVIEG 35 (405)
T ss_pred CCcCCEEEECccHHH-----HHHHHHHHhCCCEEEEEcC
Confidence 445577777633333 4455667789999999843
No 330
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.56 E-value=1e+02 Score=23.82 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=32.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
++++-..|.|=-.-+..||..+..+|.+|.++++..+..
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 445555677999999999999999999999999886643
No 331
>PRK09165 replicative DNA helicase; Provisional
Probab=38.51 E-value=2e+02 Score=22.72 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=33.6
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHC---------------CCeEEEEeCcchhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKH---------------GFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~r---------------G~~Vt~~~t~~~~~~~~~ 48 (128)
+++..-|+.|=-.=++.++...+.+ |..|.|++.+.....+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 4555678889998899999888753 789999999987765544
No 332
>PRK12828 short chain dehydrogenase; Provisional
Probab=38.39 E-value=98 Score=20.69 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=21.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
.+++.- +.|.+- ..++++|+++|++|..+.-
T Consensus 9 ~vlItG--atg~iG--~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 9 VVAITG--GFGGLG--RATAAWLAARGARVALIGR 39 (239)
T ss_pred EEEEEC--CCCcHh--HHHHHHHHHCCCeEEEEeC
Confidence 444433 445553 6788999999999877755
No 333
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=38.32 E-value=1.1e+02 Score=19.86 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
--+.|.+-++.-.+++|.+|+++.|-.-...+
T Consensus 15 dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l 46 (137)
T COG2210 15 DKAYAALIIASGAAAMGYEVTVFFTFWGLMAL 46 (137)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHh
Confidence 56789999999999999999999885444333
No 334
>PRK15043 transcriptional regulator MirA; Provisional
Probab=38.25 E-value=92 Score=22.19 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=27.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.++++.+++.. -.-+.--|..|+..|++|+++..+-.
T Consensus 164 ~~Ll~~~~~~~-~~~lwl~a~~l~~~g~~v~vl~~~~~ 200 (243)
T PRK15043 164 DALVVGWNIHD-TTRLWLEGWIASQQGWRIDVLAHSLN 200 (243)
T ss_pred CEEEEeCCCCC-cHHHHHHHHHHhcCCceEEEeCCccc
Confidence 68888888777 33444456777789999999977544
No 335
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=38.02 E-value=41 Score=24.01 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
+.+|..|+++|++|+++=-
T Consensus 14 l~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 14 LAAALALARAGIDVTIIER 32 (356)
T ss_dssp HHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHhcccccccchh
Confidence 5688999999999999743
No 336
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=37.93 E-value=84 Score=19.77 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHHCCCeE-EEEe
Q 040997 16 HVIPLLEFSQCLAKHGFRV-TFVN 38 (128)
Q Consensus 16 H~~P~l~la~~L~~rG~~V-t~~~ 38 (128)
...-.+++|+.++.+||+| +++-
T Consensus 16 ~~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 16 QASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEE
Confidence 3467899999999999984 6543
No 337
>PRK06194 hypothetical protein; Provisional
Probab=37.82 E-value=41 Score=23.62 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=15.8
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
.+++++|+++|++|+++.-
T Consensus 20 ~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 20 LAFARIGAALGMKLVLADV 38 (287)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5689999999999987654
No 338
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=37.63 E-value=98 Score=21.04 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=34.6
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC-CCeEEEEeCcchhhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r-G~~Vt~~~t~~~~~~~~~~ 49 (128)
-+++.-.||.|=-.=.++++..-+.+ |..|.|++++...+.+...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHH
Confidence 46777789999998899999888888 9999999999887765554
No 339
>PRK08589 short chain dehydrogenase; Validated
Probab=37.59 E-value=1.4e+02 Score=20.80 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..++++|+++|++|.++.-.
T Consensus 20 ~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 20 QASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred HHHHHHHHHCCCEEEEEeCc
Confidence 68899999999999887554
No 340
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=37.52 E-value=65 Score=19.56 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 18 IPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 18 ~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
.=++.+++.|...|+++ +.|+...+.+..
T Consensus 12 ~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~ 40 (112)
T cd00532 12 AMLVDLAPKLSSDGFPL--FATGGTSRVLAD 40 (112)
T ss_pred HHHHHHHHHHHHCCCEE--EECcHHHHHHHH
Confidence 44789999999999885 567766655544
No 341
>PRK06184 hypothetical protein; Provisional
Probab=37.42 E-value=51 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
|+...|+++-..-.| +.+|..|+++|++|+++=
T Consensus 1 ~~~~dVlIVGaGpaG-----l~~A~~La~~Gi~v~viE 33 (502)
T PRK06184 1 YTTTDVLIVGAGPTG-----LTLAIELARRGVSFRLIE 33 (502)
T ss_pred CCCCcEEEECCCHHH-----HHHHHHHHHCCCcEEEEe
Confidence 666777777644334 567788999999999984
No 342
>PRK06851 hypothetical protein; Provisional
Probab=37.39 E-value=90 Score=23.65 Aligned_cols=42 Identities=14% Similarity=0.453 Sum_probs=33.8
Q ss_pred eEEEEc-CCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 5 HVLVMP-GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p-~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
++.++. .||.|.-.=+-.+++.+..+|.+|.++.++....++
T Consensus 31 ~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~sl 73 (367)
T PRK06851 31 RIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSL 73 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCce
Confidence 444444 788999999999999999999999998777655443
No 343
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=37.35 E-value=67 Score=24.72 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=24.5
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
.+|+++-..+.| |-.+|+.|.++|++|+..=
T Consensus 8 ~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D 38 (461)
T PRK00421 8 KRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSD 38 (461)
T ss_pred CEEEEEEEchhh----HHHHHHHHHhCCCeEEEEC
Confidence 478888877777 3448999999999998754
No 344
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=37.21 E-value=61 Score=20.17 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=23.3
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
+.|+++-....+.+.+--++.+.|.++|..|-...|+.-.+
T Consensus 59 peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~aAcr 99 (117)
T cd05126 59 VEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEEAVK 99 (117)
T ss_pred CCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChHHHHH
Confidence 34556655555555444555556666666666666655443
No 345
>PRK13337 putative lipid kinase; Reviewed
Probab=37.17 E-value=85 Score=22.67 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCcCChH-HHHHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMPGPAQGHVI-PLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~-P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|++..+++-|..|.|+.. =.-++.+.|.++|.++++..|.
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~ 41 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATT 41 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 666667777777766643 3446777899999998877665
No 346
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=37.12 E-value=64 Score=19.02 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
..+++++..||.|--.-+..+++.+...+..+.++..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 45788999999999999999999998887566666665543
No 347
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=37.01 E-value=78 Score=22.28 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=23.5
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
|++.-. .|-+- ..|+++|.++||+|..+.....
T Consensus 3 ILVtG~--tGfiG--~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 3 ILVTGG--AGFIG--SHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred EEEEcC--cccHH--HHHHHHHHhCCCeEEEEeCCCc
Confidence 444442 44444 7899999999999999886443
No 348
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=37.00 E-value=60 Score=25.51 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=30.7
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVV 47 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~ 47 (128)
.+|++.-. |.--..=..+|.++|.++|++|.++.|+.-.+.+.
T Consensus 71 k~IllgVt-GsIAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~ 113 (475)
T PRK13982 71 KRVTLIIG-GGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFVT 113 (475)
T ss_pred CEEEEEEc-cHHHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhh
Confidence 45555442 33334578899999999999999999987655443
No 349
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=36.98 E-value=71 Score=21.85 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=21.8
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+|+++- .|.+ ...-++.|...|.+||++.+..
T Consensus 10 k~vlVvG---gG~v--a~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVG---GGDV--ALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEEC---cCHH--HHHHHHHHHHCCCEEEEEcCCC
Confidence 4566554 2322 2667788888999999887653
No 350
>PRK03094 hypothetical protein; Provisional
Probab=36.97 E-value=41 Score=19.63 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=18.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCcch
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+-.+.+.|.++|++|.=+.++..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~~~ 32 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSEQD 32 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcccc
Confidence 45688999999999987766543
No 351
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.82 E-value=60 Score=23.21 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|+-.+|.++-....| ..+|..|+.+|++|+++-..
T Consensus 1 ~~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 1 MDIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CCccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 444567777543334 45788899999999998654
No 352
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=36.81 E-value=1e+02 Score=19.78 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=26.6
Q ss_pred EEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 8 VMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 8 ~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
++.+...|--.-+++.++...++|..+..+|.....
T Consensus 83 ~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 83 LLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 344456677888888888888999888777775443
No 353
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.73 E-value=90 Score=21.03 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=20.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
++++.- +.|.+- ..+++.|+++|++|.++
T Consensus 7 ~ilI~G--asg~iG--~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 7 VAIVTG--ASGGIG--RAIAELLAKEGAKVVIA 35 (247)
T ss_pred EEEEeC--CCcHHH--HHHHHHHHHCCCEEEEE
Confidence 555554 345443 67888999999998877
No 354
>PRK08013 oxidoreductase; Provisional
Probab=36.72 E-value=50 Score=24.73 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
|+...|+++-..-.| +.+|..|+++|++|+++=-
T Consensus 1 m~~~dV~IvGaGpaG-----l~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 1 MQSVDVVIAGGGMVG-----LAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred CCcCCEEEECcCHHH-----HHHHHHHhhCCCEEEEEeC
Confidence 566667776533334 4567778899999999753
No 355
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=36.48 E-value=44 Score=23.87 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=23.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+|.++-..+.| ..+|..|++.||+|+++..+...
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~ 35 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRA 35 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHH
Confidence 46666444444 35788899999999998874333
No 356
>PRK05993 short chain dehydrogenase; Provisional
Probab=36.25 E-value=1.1e+02 Score=21.45 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|..+.-
T Consensus 18 ~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 18 AYCARALQSDGWRVFATCR 36 (277)
T ss_pred HHHHHHHHHCCCEEEEEEC
Confidence 5688999999999887654
No 357
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=36.23 E-value=60 Score=24.66 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
|++-.|+++-...-| +..|..|+++|++|+++--
T Consensus 1 ~~~~dvvVIG~GpaG-----~~aA~~l~~~g~~V~liE~ 34 (438)
T PRK07251 1 MLTYDLIVIGFGKAG-----KTLAAKLASAGKKVALVEE 34 (438)
T ss_pred CCccCEEEECCCHHH-----HHHHHHHHhCCCEEEEEec
Confidence 555677887754445 6778888999999998753
No 358
>PRK09126 hypothetical protein; Provisional
Probab=36.07 E-value=48 Score=24.52 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
|.+..|+++-..-.| +.+|..|+++|++|+++=
T Consensus 1 ~~~~dviIvGgG~aG-----l~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 1 MMHSDIVVVGAGPAG-----LSFARSLAGSGLKVTLIE 33 (392)
T ss_pred CCcccEEEECcCHHH-----HHHHHHHHhCCCcEEEEe
Confidence 555667776533223 567788889999999974
No 359
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=36.07 E-value=1.5e+02 Score=21.01 Aligned_cols=37 Identities=5% Similarity=0.175 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCC-eEEEEeC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFVNT 39 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~-~Vt~~~t 39 (128)
+++|+++|.++...-.-.-...+.|.+.|. +|+.+..
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i 65 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDV 65 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEec
Confidence 468999997654322223455566778887 4666655
No 360
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.03 E-value=49 Score=22.42 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..++++|+++|++|.++...
T Consensus 21 ~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 21 RAVAIALAKEGVNVGLLART 40 (239)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 56788999999999887654
No 361
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=35.94 E-value=71 Score=22.27 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=27.3
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+++++. .|.| +.|++.+.+.+.+.+.+|+++....+.
T Consensus 99 ~~llia-gG~G-iaP~~~~l~~~~~~~~~v~l~~~~r~~ 135 (248)
T cd06219 99 TVVFVG-GGVG-IAPIYPIAKALKEAGNRVITIIGARTK 135 (248)
T ss_pred eEEEEe-Cccc-HHHHHHHHHHHHHcCCeEEEEEEcCCH
Confidence 455555 3333 889999999999888899988766543
No 362
>PRK09183 transposase/IS protein; Provisional
Probab=35.88 E-value=1.4e+02 Score=21.10 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=29.3
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
.+++++-.+|.|=-.=+..+|..+..+|++|.|++.+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 3677777777765555556688888899999999876544
No 363
>PRK06101 short chain dehydrogenase; Provisional
Probab=35.86 E-value=49 Score=22.57 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
.+++++|+++|++|+++.-
T Consensus 15 ~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 15 KQLALDYAKQGWQVIACGR 33 (240)
T ss_pred HHHHHHHHhCCCEEEEEEC
Confidence 5789999999999887654
No 364
>PRK06523 short chain dehydrogenase; Provisional
Probab=35.81 E-value=1.2e+02 Score=20.81 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|..+.-
T Consensus 23 ~~ia~~l~~~G~~v~~~~r 41 (260)
T PRK06523 23 AATVARLLEAGARVVTTAR 41 (260)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 6889999999999877653
No 365
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=35.78 E-value=48 Score=21.49 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..+|+.|.++|++|+....
T Consensus 14 ~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 14 SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp HHHHHHHHHTTTEEEEEES
T ss_pred HHHHHHHHhcCCeEEeecc
Confidence 3689999999999998763
No 366
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.78 E-value=1.2e+02 Score=22.76 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=36.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKR 45 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~ 45 (128)
-|+|+-.=|.|-....-.||+.|.+.|.+|-+.....++..
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa 181 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA 181 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHH
Confidence 46777788899999999999999999999999999988754
No 367
>CHL00194 ycf39 Ycf39; Provisional
Probab=35.77 E-value=44 Score=24.07 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=21.6
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+|++.- +.|.+- -+|+++|.++||+|+.++-.
T Consensus 2 kIlVtG--atG~iG--~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIG--ATGTLG--RQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEEC--CCcHHH--HHHHHHHHHCCCeEEEEEcC
Confidence 455544 445433 35788899999999988643
No 368
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.50 E-value=81 Score=17.38 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=26.7
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.|++++.. .....-.+.+++.|.+.|..|-+....
T Consensus 3 ~v~i~~~~-~~~~~~a~~i~~~Lr~~g~~v~~~~~~ 37 (91)
T cd00859 3 DVYVVPLG-EGALSEALELAEQLRDAGIKAEIDYGG 37 (91)
T ss_pred cEEEEEcC-hHHHHHHHHHHHHHHHCCCEEEEecCC
Confidence 46666643 567788999999999999988775543
No 369
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=35.43 E-value=99 Score=20.92 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCC--eEEEEeC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGF--RVTFVNT 39 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~--~Vt~~~t 39 (128)
++.++.++.....|+..+.++.+.|.+.|. ++.++..
T Consensus 133 ~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 133 KPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEE
Confidence 456777777777788888888888877775 6655443
No 370
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=35.11 E-value=46 Score=23.74 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=22.3
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.+|++.- +.|++- ..|+++|.++|++|+.+...
T Consensus 5 ~~ilVtG--atGfIG--~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 5 KVVCVTG--ASGYIA--SWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CEEEEEC--ChHHHH--HHHHHHHHHCCCEEEEEEcC
Confidence 3444433 456655 35799999999999877644
No 371
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=35.08 E-value=51 Score=25.26 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
||+.| +...++|+..||++.++..
T Consensus 50 Ghlv~-l~~l~~lQ~~G~~~~~lig 73 (408)
T PRK05912 50 GHLVP-LLKLRRFQDAGHKPIALIG 73 (408)
T ss_pred HhHHH-HHHHHHHHHCCCcEEEEEc
Confidence 99997 4566788899999988863
No 372
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.05 E-value=23 Score=20.25 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEe
Q 040997 18 IPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 18 ~P~l~la~~L~~rG~~Vt~~~ 38 (128)
.=|+.|..++.++|.+|+|..
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~ 52 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQ 52 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHH
Confidence 347889999999999999853
No 373
>PRK07890 short chain dehydrogenase; Provisional
Probab=35.01 E-value=52 Score=22.54 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|+++.-
T Consensus 19 ~~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 19 RTLAVRAARAGADVVLAAR 37 (258)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 5788999999999887753
No 374
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=34.99 E-value=1.5e+02 Score=20.81 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCc-CChHHHHH-HHHHHHHCCCeEEEEeCc
Q 040997 3 SPHVLVMPGPAQ-GHVIPLLE-FSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 3 ~~hvl~~p~p~~-GH~~P~l~-la~~L~~rG~~Vt~~~t~ 40 (128)
+++|+|+|.++. +-.....+ .-+.+.+.|.+|+.+-..
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~ 70 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV 70 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 467888887664 33334333 445556677777766544
No 375
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=34.98 E-value=1e+02 Score=23.46 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.9
Q ss_pred CCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 11 GPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
=.|.|=-.-.+.||..|+.+|++|-++=.
T Consensus 130 KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 130 KGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 36679999999999999999999887633
No 376
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=34.97 E-value=45 Score=24.44 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
....|++|-....| +.+|.+|+++|++||++--
T Consensus 2 ~~~dv~IIGgGi~G-----~s~A~~L~~~g~~V~lie~ 34 (376)
T PRK11259 2 MRYDVIVIGLGSMG-----SAAGYYLARRGLRVLGLDR 34 (376)
T ss_pred CcccEEEECCCHHH-----HHHHHHHHHCCCeEEEEec
Confidence 34456666544344 5678899999999999854
No 377
>PRK13057 putative lipid kinase; Reviewed
Probab=34.90 E-value=1.2e+02 Score=21.73 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=27.7
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+++-|..+.|+ .-.-++.+.|.++|++++...|+..
T Consensus 2 ~I~Np~sg~~~-~~~~~i~~~l~~~g~~~~~~~t~~~ 37 (287)
T PRK13057 2 LLVNRHARSGR-AALAAARAALEAAGLELVEPPAEDP 37 (287)
T ss_pred EEECCCCCCcc-hhHHHHHHHHHHcCCeEEEEecCCH
Confidence 56667777777 4566888889999999999888644
No 378
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=34.89 E-value=50 Score=22.59 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCeEEEEeCcch
Q 040997 21 LEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
..+|++|+++|++|++......
T Consensus 10 ~aia~~l~~~Ga~V~~~~~~~~ 31 (241)
T PF13561_consen 10 RAIARALAEEGANVILTDRNEE 31 (241)
T ss_dssp HHHHHHHHHTTEEEEEEESSHH
T ss_pred HHHHHHHHHCCCEEEEEeCChH
Confidence 4689999999999998876644
No 379
>PRK07454 short chain dehydrogenase; Provisional
Probab=34.85 E-value=52 Score=22.34 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=22.5
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.+.+++. .+.|.+ =..++++|+++|++|+++.-+
T Consensus 6 ~k~vlIt-G~sg~i--G~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 6 MPRALIT-GASSGI--GKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCEEEEe-CCCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3444554 234433 357899999999998887654
No 380
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=34.78 E-value=59 Score=20.56 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.5
Q ss_pred HHHHHHHHCCCeEEEEeCcch
Q 040997 22 EFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 22 ~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.|++.|.+.||+|+-+.....
T Consensus 24 ~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 24 ALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp HHHHHHHHTTSEEEEESSCHH
T ss_pred HHHHHHHHCCCeEEEEEeCCc
Confidence 689999999999988776554
No 381
>PRK00889 adenylylsulfate kinase; Provisional
Probab=34.70 E-value=1.3e+02 Score=19.50 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
-|+++-.||.|=-.-.-.|++.|...|.++.++....
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 4667778999999999999999998999998886654
No 382
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=34.61 E-value=22 Score=24.46 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=13.8
Q ss_pred cCChHHHHHHHHHHHHC
Q 040997 14 QGHVIPLLEFSQCLAKH 30 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~r 30 (128)
.||+||.+-++..+..+
T Consensus 70 GaH~NPaVTla~~l~g~ 86 (227)
T PF00230_consen 70 GAHFNPAVTLAFALTGR 86 (227)
T ss_dssp TSS-SHHHHHHHHHTTS
T ss_pred ccccccchhhheeeeee
Confidence 38999999999999765
No 383
>PLN02583 cinnamoyl-CoA reductase
Probab=34.57 E-value=48 Score=23.66 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.8
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|.++|++|+.+.-
T Consensus 20 ~~lv~~Ll~~G~~V~~~~R 38 (297)
T PLN02583 20 FWLVKRLLSRGYTVHAAVQ 38 (297)
T ss_pred HHHHHHHHhCCCEEEEEEc
Confidence 4678999999999988764
No 384
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=34.41 E-value=1.1e+02 Score=21.59 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.6
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+.|=-.-+..|+++|..+|.+|-+-||-.
T Consensus 7 ~gGKTtl~~~l~~~~~~~g~~v~~TTTT~ 35 (232)
T TIGR03172 7 AGGKTSTMFWLAAEYRKEGYRVLVTTTTR 35 (232)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEECCcc
Confidence 36888889999999999999998877643
No 385
>PRK13055 putative lipid kinase; Reviewed
Probab=34.40 E-value=98 Score=22.78 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCcCC-hHHHHHHHHHHHHCCCeEEEEeC
Q 040997 2 SSPHVLVMPGPAQGH-VIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH-~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
++..|++-|..+.|. -.-.-++.+.|.++|+++++..+
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t 41 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQT 41 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 444566666666665 33445677888899999886533
No 386
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=34.39 E-value=65 Score=20.45 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=34.5
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
..+-+.|..|.+-+.|.-++-++|.+.-.++.++++...
T Consensus 47 Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 47 LQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred eEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 467888999999999999999999998899999998754
No 387
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=34.37 E-value=1.1e+02 Score=24.83 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=23.2
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.++++|. .+.|.+ =..++++|+++|++|+.+.-.
T Consensus 80 gKvVLVT-GATGgI--G~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 80 EDLAFVA-GATGKV--GSRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred CCEEEEE-CCCCHH--HHHHHHHHHHCCCeEEEEeCC
Confidence 3455554 345655 457789999999999887543
No 388
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=34.28 E-value=58 Score=21.92 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=22.1
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.+|++.- +.|.+- ..+++.|+++|++|+.+...
T Consensus 6 ~~ilItG--asg~iG--~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 6 KTALVTG--ASRGIG--RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CEEEEEC--CCcHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 4555544 344442 57889999999998776654
No 389
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=34.26 E-value=3.6e+02 Score=24.45 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCc-CChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhhhhccCCCCCCCceEEecCCCCCCCCC
Q 040997 3 SPHVLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLEEQIRLVSIPDGMEPWED 74 (128)
Q Consensus 3 ~~hvl~~p~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 74 (128)
+++|+++-+||. ++ .+.++.|...|+++..+......+.- . ...+++...+|.|+..++.
T Consensus 1037 ~pkVaVl~~pGtN~~----~e~~~Af~~aGf~~~~V~~~dl~~~~-~-------~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206 1037 KPKVAIIREEGSNGD----REMAAAFYAAGFEPWDVTMSDLLNGR-I-------SLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred CCeEEEEECCCCCCH----HHHHHHHHHcCCceEEEEeeeccccc-c-------cccceeEEEEcCcCCCccc
Confidence 578999999987 55 56788888889998777665432210 0 0135677778888776543
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=34.26 E-value=1.2e+02 Score=22.32 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=33.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
-|+++-.+|.|=-.-+..||..+..+|.+|.++....+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 466777888899999999999999999999999877643
No 391
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=34.25 E-value=47 Score=24.06 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=19.3
Q ss_pred HHHHHHHHHCCCeEEEEeCcchh
Q 040997 21 LEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
.+|+++|.+.|..||+++-..-.
T Consensus 150 ~~la~eL~~~GI~vtlI~Dsa~~ 172 (275)
T PRK08335 150 LALANELEFLGIEFEVITDAQLG 172 (275)
T ss_pred HHHHHHHHHCCCCEEEEeccHHH
Confidence 56799999999999998876543
No 392
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=34.06 E-value=35 Score=20.93 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=21.6
Q ss_pred cCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 10 PGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 10 p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
-+||+|+++=-.+|++++...|. +|+-+
T Consensus 78 i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 78 IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 46899999999999999998775 45443
No 393
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=33.96 E-value=46 Score=25.13 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=28.2
Q ss_pred eEEEE-cCCCcCChHHHHHHHHHHHH----CC------CeEEEEeCcchhhh
Q 040997 5 HVLVM-PGPAQGHVIPLLEFSQCLAK----HG------FRVTFVNTDYYHKR 45 (128)
Q Consensus 5 hvl~~-p~p~~GH~~P~l~la~~L~~----rG------~~Vt~~~t~~~~~~ 45 (128)
++.++ -..+.|--.-++.||-+|+. -| -.|-+++-+.....
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~ 141 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYRED 141 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHH
Confidence 45555 45566888889999888875 24 25777887766544
No 394
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=33.92 E-value=97 Score=24.20 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
..+|+++-....| +..++.|.++|++|++.=.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 4578898888888 88999999999999998654443
No 395
>PRK07102 short chain dehydrogenase; Provisional
Probab=33.89 E-value=54 Score=22.33 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.7
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..++++|+++|++|+++.-.
T Consensus 15 ~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 15 RACARRYAAAGARLYLAARD 34 (243)
T ss_pred HHHHHHHHhcCCEEEEEeCC
Confidence 67899999999998887543
No 396
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=33.89 E-value=1.6e+02 Score=20.37 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=32.7
Q ss_pred CeEEEEcCCC-cCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 4 PHVLVMPGPA-QGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 4 ~hvl~~p~p~-~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
..+-++..|+ .|=-.-+++.++....+|-+|.++++.-..+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R 45 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTR 45 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 3555555555 5999999999999999999999998876543
No 397
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=33.79 E-value=84 Score=19.74 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=14.5
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+-|.+.|.+ ++|.++|.+|.++..+
T Consensus 108 gD~Df~~~i---~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 108 GDSDFVPLV---ERLRELGKRVIVVGFE 132 (149)
T ss_pred CCccHHHHH---HHHHHcCCEEEEEccC
Confidence 455555544 3444457777777666
No 398
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=33.77 E-value=1.6e+02 Score=20.28 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=28.1
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
.+++++. .+.| +.|++.+.+.+.+++.+|+++-.....
T Consensus 98 ~~~llia-gGtG-iap~~~~l~~~~~~~~~v~l~~~~r~~ 135 (243)
T cd06192 98 GTVLLVA-GGIG-LAPLLPIAKKLAANGNKVTVLAGAKKA 135 (243)
T ss_pred CEEEEEe-Cccc-HHHHHHHHHHHHHCCCeEEEEEecCcH
Confidence 3566665 2333 789999999999888899998776554
No 399
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.74 E-value=51 Score=25.11 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..+|++|..+|.+|+++..+
T Consensus 215 ~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 215 LALAEAAYKRGADVTLITGP 234 (390)
T ss_pred HHHHHHHHHCCCEEEEeCCC
Confidence 46899999999999997643
No 400
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.73 E-value=52 Score=24.23 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=23.1
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
++++|...-. .+ =.+.|++|+.||.+|++..=..
T Consensus 36 ~~~vVTGans-GI--G~eta~~La~~Ga~Vv~~~R~~ 69 (314)
T KOG1208|consen 36 KVALVTGATS-GI--GFETARELALRGAHVVLACRNE 69 (314)
T ss_pred cEEEEECCCC-ch--HHHHHHHHHhCCCEEEEEeCCH
Confidence 3555553332 22 3688999999999998876654
No 401
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=33.71 E-value=56 Score=22.01 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
...+++.- +.|.+ =..+++.|+++|++|++++..
T Consensus 5 ~~~vlItG--~sg~i--G~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 5 GKVALVTG--ASRGI--GRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCEEEEEC--CCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 33444433 44543 467899999999999777653
No 402
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=33.70 E-value=73 Score=20.13 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 19 PLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 19 P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
..++..++|.+.|+.|+++|.-...
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 5667777778899999999987554
No 403
>PRK09739 hypothetical protein; Provisional
Probab=33.61 E-value=1.5e+02 Score=19.88 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=22.8
Q ss_pred CCCCeEEEEcC-CCcCC-hHH-HHHHHHHHHHCCCeEEEEeC
Q 040997 1 MSSPHVLVMPG-PAQGH-VIP-LLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 1 m~~~hvl~~p~-p~~GH-~~P-~l~la~~L~~rG~~Vt~~~t 39 (128)
|..++|+++.. |-.+- -.- .-.+.+.+.++|++|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 56667887763 32222 222 33445666678999998643
No 404
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=33.61 E-value=1.6e+02 Score=20.46 Aligned_cols=37 Identities=35% Similarity=0.424 Sum_probs=27.2
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+++++. .+.| +.|++.+.+.+..+|.+|+++....+.
T Consensus 104 ~~vlIa-gG~G-iaP~~s~l~~~~~~~~~v~l~~~~r~~ 140 (250)
T PRK00054 104 KVLLVG-GGIG-VAPLYELAKELKKKGVEVTTVLGARTK 140 (250)
T ss_pred eEEEEe-cccc-HHHHHHHHHHHHHcCCcEEEEEEcCCH
Confidence 556665 3333 789999999999889899987665443
No 405
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=33.51 E-value=1.2e+02 Score=18.91 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=28.8
Q ss_pred EEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 7 LVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 7 l~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+|+...+.|=..=.+.|.+.|.++|.+|-++=+-..
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~ 38 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQT 38 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 456666678888889999999999999999855443
No 406
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=33.42 E-value=1.7e+02 Score=20.34 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=34.8
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~ 46 (128)
-+++.-.+|.|=-.-.++++..++.+|..+.+++++.....+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~ 67 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEF 67 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 466777888899999999999999999999999988665443
No 407
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=33.42 E-value=75 Score=21.27 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCeEEEEeCcchhh
Q 040997 22 EFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 22 ~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
.|+++|.++|++|+.++......
T Consensus 13 ~l~~~l~~~g~~v~~~~~~~~~~ 35 (236)
T PF01370_consen 13 ALVRQLLKKGHEVIVLSRSSNSE 35 (236)
T ss_dssp HHHHHHHHTTTEEEEEESCSTGG
T ss_pred HHHHHHHHcCCcccccccccccc
Confidence 56999999999988777665544
No 408
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=33.39 E-value=1.3e+02 Score=21.07 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=26.6
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
|.+.-=.|.|--.-...||..|+.+|.+|-++
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34444567799999999999999999998776
No 409
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=33.34 E-value=1.2e+02 Score=20.65 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCcC-----ChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 3 SPHVLVMPGPAQG-----HVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 3 ~~hvl~~p~p~~G-----H~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+.+|+++|..-.+ +..-..++++.|...|.+|-+-..
T Consensus 10 P~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r 51 (202)
T cd00862 10 PIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDR 51 (202)
T ss_pred CceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4589999975332 677889999999999999988543
No 410
>PRK07773 replicative DNA helicase; Validated
Probab=33.32 E-value=2.2e+02 Score=24.29 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=35.0
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHC-CCeEEEEeCcchhhhhhhh
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKH-GFRVTFVNTDYYHKRVVES 49 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~r-G~~Vt~~~t~~~~~~~~~~ 49 (128)
|++..-|+.|=-.=.+++|...+.+ |..|.|++.+....++...
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 4556678889999999999998864 8899999998876655443
No 411
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=33.30 E-value=1.6e+02 Score=21.94 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=26.1
Q ss_pred EcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 9 MPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 9 ~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+...|.|=.-=...|++.|.++|.+|.+++=
T Consensus 57 i~vGGtGKTP~v~~L~~~l~~~g~~~~ilsR 87 (325)
T PRK00652 57 ITVGGTGKTPVVIALAEQLQARGLKPGVVSR 87 (325)
T ss_pred eeCCCCChHHHHHHHHHHHHHCCCeEEEECC
Confidence 4567788888889999999999999888753
No 412
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=33.24 E-value=56 Score=24.00 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCcc
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.+.+|+.|..+|++||++....
T Consensus 148 gle~A~~~~~~G~~v~l~e~~~ 169 (415)
T COG0446 148 GLEAAEAAAKRGKKVTLIEAAD 169 (415)
T ss_pred HHHHHHHHHHcCCeEEEEEccc
Confidence 4889999999999999986653
No 413
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=33.16 E-value=1.3e+02 Score=21.45 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCC-cCChH---HHHHHHHHHHHCCCeEEEEeCcch
Q 040997 1 MSSPHVLVMPGPA-QGHVI---PLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 1 m~~~hvl~~p~p~-~GH~~---P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
|.+.+|.++.... .=|-+ ....+.+.|.++||+|..+.....
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~ 47 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED 47 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc
Confidence 4455777776222 13433 678899999999999999876543
No 414
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=33.05 E-value=1.3e+02 Score=21.16 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=24.4
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+.|+++...+.+. .-.-.++..|.++|++|..+--+
T Consensus 19 p~vvliHG~~~~~-~~w~~~~~~L~~~g~~vi~~dl~ 54 (273)
T PLN02211 19 PHFVLIHGISGGS-WCWYKIRCLMENSGYKVTCIDLK 54 (273)
T ss_pred CeEEEECCCCCCc-CcHHHHHHHHHhCCCEEEEeccc
Confidence 5788888555433 23566677888899998876443
No 415
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=32.98 E-value=64 Score=23.88 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 15 GHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 15 GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
||+.|+.. .+.|+..|+++.|+.....
T Consensus 46 G~~~~~~~-~~~lq~~g~~~~i~IaD~h 72 (329)
T PRK08560 46 GHLLTMNK-LADLQKAGFKVTVLLADWH 72 (329)
T ss_pred hhhHHHHH-HHHHHHCCCeEEEEEccch
Confidence 88888777 5666777999999776543
No 416
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=32.96 E-value=47 Score=24.80 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=15.1
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 040997 21 LEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~ 38 (128)
+.+|..|+++|++|+++=
T Consensus 31 l~~A~~L~~~G~~v~v~E 48 (415)
T PRK07364 31 LTLAAALKDSGLRIALIE 48 (415)
T ss_pred HHHHHHHhcCCCEEEEEe
Confidence 566888999999999984
No 417
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=32.93 E-value=1.4e+02 Score=20.64 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=29.8
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
-|+|+..|.+-.-.-+++|+++|...|..|-++...
T Consensus 110 iVaFvgSpi~esedeLirlak~lkknnVAidii~fG 145 (243)
T COG5148 110 IVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFG 145 (243)
T ss_pred EEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehh
Confidence 367888899866699999999999999888776554
No 418
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=32.92 E-value=54 Score=22.53 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=21.4
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.++|. .+.|.+- ..+++.|+++|++|..+...
T Consensus 8 ~vlIt-Gas~~iG--~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 8 VALLT-GAASGIG--EAVAERYLAEGARVVIADIK 39 (257)
T ss_pred EEEEe-CCCchHH--HHHHHHHHHcCCEEEEEcCC
Confidence 34444 2444442 68999999999998876543
No 419
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=32.91 E-value=1.2e+02 Score=21.02 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.7
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
.|.++.=.|.|=-.-...||..|+++|++|-++=
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4666666777999999999999999999998873
No 420
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.90 E-value=1.3e+02 Score=19.08 Aligned_cols=38 Identities=5% Similarity=0.038 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCC-eEEEEeCc
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFVNTD 40 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~-~Vt~~~t~ 40 (128)
++.++.++....+|+.-|-++.++|.++|. ++.++...
T Consensus 50 ~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG 88 (128)
T cd02072 50 DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEEC
Confidence 457788887788888888899999988885 66555443
No 421
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=32.89 E-value=83 Score=19.10 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 19 PLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 19 P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
=++++++.|...|+++ +.|+...+.+..
T Consensus 14 ~~~~~a~~l~~~G~~i--~aT~gTa~~L~~ 41 (116)
T cd01423 14 ELLPTAQKLSKLGYKL--YATEGTADFLLE 41 (116)
T ss_pred hHHHHHHHHHHCCCEE--EEccHHHHHHHH
Confidence 4779999999999886 567776665543
No 422
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=32.87 E-value=1.2e+02 Score=18.67 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=34.8
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKR 45 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~ 45 (128)
++++.-.+|.|--.=+..++..+...|..|.|+..+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 36677788999999999999999999999999988876543
No 423
>PHA02754 hypothetical protein; Provisional
Probab=32.83 E-value=73 Score=17.39 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHCC---CeEEEEeCcch
Q 040997 19 PLLEFSQCLAKHG---FRVTFVNTDYY 42 (128)
Q Consensus 19 P~l~la~~L~~rG---~~Vt~~~t~~~ 42 (128)
-|.+|-..|.++| +++..++++.+
T Consensus 19 ~MRelkD~LSe~GiYi~RIkai~~SGd 45 (67)
T PHA02754 19 AMRELKDILSEAGIYIDRIKAITTSGD 45 (67)
T ss_pred HHHHHHHHHhhCceEEEEEEEEEecCC
Confidence 4678888899999 67777777655
No 424
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=32.79 E-value=1.5e+02 Score=20.92 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=31.6
Q ss_pred EEEEc-CCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 6 VLVMP-GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 6 vl~~p-~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
|.|.. =.|.|=-.-.+-||..|+++|-+|+++=+..+..
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 44444 3456999999999999999999999998877654
No 425
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=32.76 E-value=3.7e+02 Score=24.19 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=42.1
Q ss_pred CCCeEEEEcCCCc-CChHHHHHHHHHHHHCCCeEEEEeCcchh-hhhhhhhccCCCCCCCceEEecCCCCCCCCCC
Q 040997 2 SSPHVLVMPGPAQ-GHVIPLLEFSQCLAKHGFRVTFVNTDYYH-KRVVESLQGKNYLEEQIRLVSIPDGMEPWEDR 75 (128)
Q Consensus 2 ~~~hvl~~p~p~~-GH~~P~l~la~~L~~rG~~Vt~~~t~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 75 (128)
.+++|+++-+||. ++ .+.++.+...|+++..+...... ..+..+...-.....+++...+|.|+..++..
T Consensus 976 ~kpkvaIl~~pGtNce----~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l 1047 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSE----YDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEP 1047 (1239)
T ss_pred CCCeEEEEECCCCCCH----HHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCccccc
Confidence 3678999999987 65 46777777799987777654422 12111110000011356777888888776544
No 426
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=32.68 E-value=56 Score=22.49 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=15.9
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|+++.-
T Consensus 22 ~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 22 RGVALRAAAEGARVVLVDR 40 (260)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5789999999999987654
No 427
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=32.63 E-value=49 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCeEEEEeCcch
Q 040997 22 EFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 22 ~la~~L~~rG~~Vt~~~t~~~ 42 (128)
.++++|+..|.+||+++-..-
T Consensus 125 ~~a~~L~~~GI~vtli~Dsa~ 145 (253)
T PRK06372 125 DMAKLLVKSGIDVVLLTDASM 145 (253)
T ss_pred HHHHHHHHCCCCEEEEehhHH
Confidence 799999999999998876543
No 428
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=32.57 E-value=90 Score=22.78 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=35.3
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC--CCeEEEEeCcchhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDYYHKRV 46 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r--G~~Vt~~~t~~~~~~~ 46 (128)
+||++-..+.|.+.=...+.+.|.++ +.+|++++.+.+..-+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~ 44 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPIL 44 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHH
Confidence 58888888899999999999999885 7999999998775433
No 429
>PHA02518 ParA-like protein; Provisional
Probab=32.55 E-value=85 Score=20.83 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=25.9
Q ss_pred CCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 11 GPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
=.|.|=-.-...||..|+++|.+|.++=...
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~ 39 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDP 39 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4566888999999999999999998875543
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.49 E-value=1.4e+02 Score=23.07 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=32.2
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHH--HCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLA--KHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~--~rG~~Vt~~~t~~~~ 43 (128)
-++|+-..|.|=-.-...||.+++ ..|.+|.++++..+.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 456666678899999999999998 468999999998754
No 431
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=32.34 E-value=1.4e+02 Score=19.98 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=25.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
+++++. +-|.+.|. .+.+..+|-+|+++.+..
T Consensus 113 ~ivl~S--gD~DF~p~---v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 113 TIVLFS--GDGDFIPL---VEAARDKGKRVEVAGIEP 144 (181)
T ss_pred EEEEEc--CCccHHHH---HHHHHHcCCEEEEEecCC
Confidence 566665 77888888 666778999999998876
No 432
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=32.30 E-value=1.3e+02 Score=19.46 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=26.2
Q ss_pred cCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 10 PGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 10 p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+-+|.|=-.-...||..|+++|.+|.++=..
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3567788899999999999999999998544
No 433
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=32.09 E-value=50 Score=23.23 Aligned_cols=26 Identities=8% Similarity=0.126 Sum_probs=18.7
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
+.|.+- -.++++|.++|++|+.++-.
T Consensus 7 atG~iG--~~vv~~L~~~g~~V~~~~R~ 32 (285)
T TIGR03649 7 GTGKTA--SRIARLLQAASVPFLVASRS 32 (285)
T ss_pred CCChHH--HHHHHHHHhCCCcEEEEeCC
Confidence 445543 35678889999999988754
No 434
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=31.83 E-value=1.2e+02 Score=18.36 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=25.3
Q ss_pred EcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 9 MPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 9 ~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+-+...|--.-+++.++...++|.+|..+|....
T Consensus 48 I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~ 81 (119)
T cd05017 48 IAVSYSGNTEETLSAVEQAKERGAKIVAITSGGK 81 (119)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3345667777888888888899999887775443
No 435
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.78 E-value=76 Score=24.43 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=23.7
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
.+|+++-+...| +.+++.|.++|++|+..=.
T Consensus 15 ~~i~v~G~G~sG-----~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSN-----IPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CeEEEEcccHHH-----HHHHHHHHHCCCEEEEECC
Confidence 467777665555 4889999999999988653
No 436
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.71 E-value=1.1e+02 Score=21.61 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=15.5
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 040997 21 LEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~ 38 (128)
..+|++|+++|++|.+..
T Consensus 21 ~aiA~~la~~G~~Vil~~ 38 (274)
T PRK08415 21 YGIAKACFEQGAELAFTY 38 (274)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 789999999999988754
No 437
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=31.55 E-value=1.2e+02 Score=24.10 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 18 IPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 18 ~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
.=+++|++.|...|+++ +.|....+.+..
T Consensus 15 ~~iv~lAk~L~~lGfeI--~AT~GTak~L~e 43 (513)
T PRK00881 15 TGIVEFAKALVELGVEI--LSTGGTAKLLAE 43 (513)
T ss_pred ccHHHHHHHHHHCCCEE--EEcchHHHHHHH
Confidence 34789999999999996 577777766655
No 438
>PRK10985 putative hydrolase; Provisional
Probab=31.54 E-value=1.4e+02 Score=21.57 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=22.7
Q ss_pred CeEEEEcCCCcCCh-HH-HHHHHHHHHHCCCeEEEEeC
Q 040997 4 PHVLVMPGPAQGHV-IP-LLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 4 ~hvl~~p~p~~GH~-~P-~l~la~~L~~rG~~Vt~~~t 39 (128)
+-|+++... .|+. .+ +..+++.|+++|++|..+.-
T Consensus 59 p~vll~HG~-~g~~~~~~~~~~~~~l~~~G~~v~~~d~ 95 (324)
T PRK10985 59 PRLVLFHGL-EGSFNSPYAHGLLEAAQKRGWLGVVMHF 95 (324)
T ss_pred CEEEEeCCC-CCCCcCHHHHHHHHHHHHCCCEEEEEeC
Confidence 356666633 2332 23 45699999999998877644
No 439
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=31.53 E-value=83 Score=19.97 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 18 IPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 18 ~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.-+.+|++.|..+|.+|.+++-+.
T Consensus 89 ~a~~~l~~~L~~~G~~v~~~~w~~ 112 (130)
T PF12965_consen 89 RAIKRLGKLLKEAGCKVKIITWPP 112 (130)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCC
Confidence 356788889989999998887764
No 440
>PRK08263 short chain dehydrogenase; Provisional
Probab=31.53 E-value=1.3e+02 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=15.6
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|+.+.-
T Consensus 17 ~~~a~~l~~~g~~V~~~~r 35 (275)
T PRK08263 17 RAWTEAALERGDRVVATAR 35 (275)
T ss_pred HHHHHHHHHCCCEEEEEEC
Confidence 5688999999999887654
No 441
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=31.50 E-value=1.3e+02 Score=18.42 Aligned_cols=19 Identities=32% Similarity=0.288 Sum_probs=12.5
Q ss_pred HHHHHHHHCCCeEEEEeCc
Q 040997 22 EFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 22 ~la~~L~~rG~~Vt~~~t~ 40 (128)
.+-.++.++|++|++++..
T Consensus 16 g~i~~~~~~g~~v~vv~~t 34 (128)
T PF02585_consen 16 GTIAKLAEAGHRVVVVTLT 34 (128)
T ss_dssp HHHHHHHHTT-EEEEEECE
T ss_pred HHHHHHHhcCCeEEEEEec
Confidence 3445677889999886543
No 442
>PRK04328 hypothetical protein; Provisional
Probab=31.46 E-value=1.8e+02 Score=20.35 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=35.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
-+++.--|+.|--.=.++++..-+.+|..+.|++++.....+..
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 45666678889988888888887788999999999877665444
No 443
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=31.39 E-value=1.4e+02 Score=22.52 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=24.0
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.+|+++ |.| .--+++|..|+++|.+||++...
T Consensus 138 ~~vvVi---GgG--~~g~e~A~~l~~~g~~Vtli~~~ 169 (427)
T TIGR03385 138 ENVVII---GGG--YIGIEMAEALRERGKNVTLIHRS 169 (427)
T ss_pred CeEEEE---CCC--HHHHHHHHHHHhCCCcEEEEECC
Confidence 467777 333 34578999999999999998754
No 444
>PRK08309 short chain dehydrogenase; Provisional
Probab=31.22 E-value=64 Score=21.48 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=16.6
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..+++.|+++|++|++++-.
T Consensus 13 g~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHCcCEEEEEECC
Confidence 45999999999999887643
No 445
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=31.16 E-value=1.7e+02 Score=19.91 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=25.3
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCC--eEEEEeCcch
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGF--RVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~--~Vt~~~t~~~ 42 (128)
+++++. .|.| +.|++.+.+.+...+. +|+++....+
T Consensus 105 ~~l~ia-gG~G-iap~~~~l~~~~~~~~~~~v~l~~~~r~ 142 (232)
T cd06212 105 PIVLIG-GGSG-MAPLLSLLRDMAASGSDRPVRFFYGART 142 (232)
T ss_pred cEEEEe-cCcc-hhHHHHHHHHHHhcCCCCcEEEEEeccc
Confidence 566665 3444 7899999999988764 5888765443
No 446
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=31.12 E-value=86 Score=21.35 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=27.6
Q ss_pred EEEEcCCCcCCh-HHHHHHHHHHHHCCCeEEEEeC
Q 040997 6 VLVMPGPAQGHV-IPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 6 vl~~p~p~~GH~-~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+++.+.|+.=|+ .|.=+++..|.+.|.++..+.-
T Consensus 36 ~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lvL 70 (194)
T TIGR03264 36 VAVAMSPGRRHITKPVCEITYALREAGIQTSVLVL 70 (194)
T ss_pred EEEecCcccccCCCcHHHHHHHHHHcCCccceEEE
Confidence 566678899998 5999999999999988666543
No 447
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.06 E-value=64 Score=21.68 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=22.4
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
.+|++.- +.|.+- ..|+++|.++|++|+.++..
T Consensus 7 ~~vlItG--asg~iG--~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 7 RVALVTG--AARGLG--RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CEEEEeC--CCchHH--HHHHHHHHHCCCeEEEEeCC
Confidence 3555543 556643 57889999999998765543
No 448
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=30.97 E-value=59 Score=24.56 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=23.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEE
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~ 37 (128)
-|+++.-...|+=+---.+|..||++|+-|.-+
T Consensus 101 PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~ai 133 (379)
T PF03403_consen 101 PVVIFSHGLGGSRTSYSAICGELASHGYVVAAI 133 (379)
T ss_dssp EEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE
T ss_pred CEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEe
Confidence 467777777788888999999999999876554
No 449
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=30.92 E-value=1.4e+02 Score=22.36 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=25.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHC--CCeEEEEeCcc
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKH--GFRVTFVNTDY 41 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~r--G~~Vt~~~t~~ 41 (128)
+++++. .|.| +.|++.+.+.+..+ +.+|+++-...
T Consensus 263 ~~vlIa-gGtG-IaP~~s~l~~~~~~~~~~~v~l~~~~r 299 (399)
T PRK13289 263 PVVLIS-GGVG-ITPMLSMLETLAAQQPKRPVHFIHAAR 299 (399)
T ss_pred cEEEEe-cCcc-HHHHHHHHHHHHhcCCCCCEEEEEEeC
Confidence 567766 4455 99999999999765 45788865543
No 450
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=30.88 E-value=1.2e+02 Score=24.13 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
+++|++.|...|+++ +.|....+.+..
T Consensus 13 iv~lAk~L~~lGfeI--iATgGTak~L~e 39 (511)
T TIGR00355 13 IVEFAQGLVERGVEL--LSTGGTAKLLAE 39 (511)
T ss_pred HHHHHHHHHHCCCEE--EEechHHHHHHH
Confidence 678999999999986 577777766655
No 451
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=30.86 E-value=1.5e+02 Score=19.87 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=28.6
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcch
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
+++.-.||.|--.-+..+.+.+..+|.+|.++++..-
T Consensus 21 ~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~ 57 (196)
T PF13604_consen 21 SVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNK 57 (196)
T ss_dssp EEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHH
Confidence 3444678999999999999999999999888877644
No 452
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.71 E-value=84 Score=22.78 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHC
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKH 30 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~r 30 (128)
.+|+++--.||.|-....+-||++|.-.
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 4799999999999999999999999864
No 453
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=30.63 E-value=1.5e+02 Score=19.88 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=21.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEE
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTF 36 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~ 36 (128)
-|++++ -..|--.-+..+|++|+++|+.|..
T Consensus 16 ~Vvv~~-d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 16 AVVVIH-DIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEE--BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred EEEEEc-CCCCCchHHHHHHHHHHhcCCCEEe
Confidence 455555 4456668888999999999987765
No 454
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=30.60 E-value=1.4e+02 Score=21.05 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=27.2
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
|-++-+.+.|=..=+..|+++|..+|++|-++-
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344556788999999999999999999998883
No 455
>PRK10125 putative glycosyl transferase; Provisional
Probab=30.57 E-value=66 Score=24.37 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=22.5
Q ss_pred cCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 14 QGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 14 ~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
.|-=-=+++|++.|.++||+|.++....
T Consensus 13 GGaeri~~~L~~~l~~~G~~~~i~~~~~ 40 (405)
T PRK10125 13 GGAAGVALDLHQRALQQGLASHFVYGYG 40 (405)
T ss_pred CchhHHHHHHHHHHHhcCCeEEEEEecC
Confidence 3555568999999999999999976643
No 456
>PRK06138 short chain dehydrogenase; Provisional
Probab=30.56 E-value=62 Score=22.00 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=20.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
++++.- +.|.+- .+|+++|+++|++|+.+..
T Consensus 7 ~~lItG--~sg~iG--~~la~~l~~~G~~v~~~~r 37 (252)
T PRK06138 7 VAIVTG--AGSGIG--RATAKLFAREGARVVVADR 37 (252)
T ss_pred EEEEeC--CCchHH--HHHHHHHHHCCCeEEEecC
Confidence 444443 334443 5788999999999877654
No 457
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.51 E-value=1.1e+02 Score=19.91 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHH-CC--CeEEEE
Q 040997 16 HVIPLLEFSQCLAK-HG--FRVTFV 37 (128)
Q Consensus 16 H~~P~l~la~~L~~-rG--~~Vt~~ 37 (128)
|....-.|+++|.+ +| .+|.++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 66677888999977 54 555543
No 458
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=30.45 E-value=77 Score=19.94 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=20.7
Q ss_pred CChHHHH---HHHHHHHHCCCeEEEEeCcchh
Q 040997 15 GHVIPLL---EFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 15 GH~~P~l---~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
||+..++ -+++.|..+|++|++++.-...
T Consensus 15 Gh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~ 46 (143)
T cd00802 15 GHLRTIVTFDFLAQAYRKLGYKVRCIALIDDA 46 (143)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCC
Confidence 7776543 3677777899999998765444
No 459
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=30.44 E-value=57 Score=24.39 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=21.1
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+|++|-....| +..|.+|+++|++|+++=-
T Consensus 3 ~vvIIGaG~~G-----~~~A~~La~~g~~V~vle~ 32 (410)
T PRK12409 3 HIAVIGAGITG-----VTTAYALAQRGYQVTVFDR 32 (410)
T ss_pred EEEEECCCHHH-----HHHHHHHHHCCCeEEEEeC
Confidence 56666543334 5568888889999999844
No 460
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=30.37 E-value=59 Score=23.87 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
+..|.+|+++|.+||++--
T Consensus 13 ~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 13 CFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred HHHHHHHHHCCCeEEEEec
Confidence 4568889999999999743
No 461
>PRK06924 short chain dehydrogenase; Provisional
Probab=30.36 E-value=63 Score=22.04 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=15.9
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..++++|+++|++|+.+.-.
T Consensus 15 ~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 15 EAIANQLLEKGTHVISISRT 34 (251)
T ss_pred HHHHHHHHhcCCEEEEEeCC
Confidence 46789999999998876543
No 462
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=30.35 E-value=52 Score=25.93 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=19.4
Q ss_pred HHHHHHHHHCCCeEEEEeCcchhh
Q 040997 21 LEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
|.=|..|+.+|++||++-+....-
T Consensus 13 L~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 13 LAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred HHHHHHHHhCCCceEEEeccCccC
Confidence 556789999999999997765543
No 463
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=30.32 E-value=76 Score=21.27 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCc
Q 040997 20 LLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~ 40 (128)
=..++++|+++|++|..+...
T Consensus 11 G~~la~~l~~~G~~v~~~~r~ 31 (239)
T TIGR01830 11 GRAIALKLAKEGAKVIITYRS 31 (239)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 467889999999998777554
No 464
>PRK07023 short chain dehydrogenase; Provisional
Probab=30.31 E-value=69 Score=21.80 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|..+.-
T Consensus 15 ~~ia~~l~~~G~~v~~~~r 33 (243)
T PRK07023 15 AALAEQLLQPGIAVLGVAR 33 (243)
T ss_pred HHHHHHHHhCCCEEEEEec
Confidence 5788999999999888654
No 465
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.31 E-value=1.3e+02 Score=20.91 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=21.9
Q ss_pred eEEEEcCCCcC-ChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQG-HVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~G-H~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+++++...+.| -+ =..+|++|+++|++|.+..-
T Consensus 11 k~~lItGas~g~GI--G~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 11 KRGLVVGIANEQSI--AWGCARAFRALGAELAVTYL 44 (258)
T ss_pred CEEEEECCCCCCcH--HHHHHHHHHHcCCEEEEEeC
Confidence 56666654421 22 27889999999999877543
No 466
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=30.17 E-value=32 Score=25.35 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=15.0
Q ss_pred CcCChHHHHHHHHHHHHC
Q 040997 13 AQGHVIPLLEFSQCLAKH 30 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~r 30 (128)
..||+||.+.++.....|
T Consensus 88 SGgHlNPAVS~a~~~~g~ 105 (316)
T KOG0224|consen 88 SGGHLNPAVSLAMCILGR 105 (316)
T ss_pred cccccCHHHHHHHHHhcC
Confidence 349999999999877765
No 467
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=30.12 E-value=72 Score=21.42 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=18.3
Q ss_pred CcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 13 AQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 13 ~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
|.||+- +.+|-.|+.+||+|+-+-...
T Consensus 7 GlGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 7 GLGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp --STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred CCCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 556663 567889999999999885543
No 468
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=30.05 E-value=62 Score=23.59 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=24.3
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
++|.++-....| ..+|..|+++||+|+++..+.
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 467777544445 357889999999999987643
No 469
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=29.92 E-value=1.6e+02 Score=19.33 Aligned_cols=38 Identities=8% Similarity=0.007 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHhcCCCCCccEEEeCCCcccHHHHHHhcC
Q 040997 89 MPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMN 128 (128)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lg 128 (128)
..+...++++.+.+.+ ...+|++...-.+...+++++|
T Consensus 88 ~~~~~~~~l~~l~~~g--~~v~ivS~s~~~~v~~~~~~lg 125 (202)
T TIGR01490 88 LYPEARDLIRWHKAEG--HTIVLVSASLTILVKPLARILG 125 (202)
T ss_pred ccHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHHcC
Confidence 3445677777776542 4567788888788888888765
No 470
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.90 E-value=64 Score=22.43 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=15.9
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 040997 21 LEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~ 38 (128)
..+|++|+++|++|.+..
T Consensus 23 ~aia~~la~~G~~v~~~~ 40 (257)
T PRK08594 23 WGIARSLHNAGAKLVFTY 40 (257)
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 789999999999988763
No 471
>PRK07825 short chain dehydrogenase; Provisional
Probab=29.82 E-value=1.4e+02 Score=20.69 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|.+..-
T Consensus 19 ~~la~~l~~~G~~v~~~~r 37 (273)
T PRK07825 19 LATARALAALGARVAIGDL 37 (273)
T ss_pred HHHHHHHHHCCCEEEEEEC
Confidence 6788999999999887654
No 472
>PRK08339 short chain dehydrogenase; Provisional
Probab=29.82 E-value=66 Score=22.44 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=21.1
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+++++.... |=+ =..+|++|+++|++|.++.-
T Consensus 9 k~~lItGas-~gI--G~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASS-KGI--GFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCC-CcH--HHHHHHHHHHCCCEEEEEeC
Confidence 455555333 222 35689999999999887653
No 473
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.76 E-value=1.4e+02 Score=18.24 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=28.3
Q ss_pred EEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 7 LVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 7 l~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+++.+...|--.-+++.++.+.++|..|..+|.....
T Consensus 50 l~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 50 VVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 4455566788888899999999999987777776554
No 474
>PRK06196 oxidoreductase; Provisional
Probab=29.68 E-value=69 Score=23.01 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=21.7
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+.++|.. +.|-+ =..++++|+++|++|+++.-
T Consensus 27 k~vlITG-asggI--G~~~a~~L~~~G~~Vv~~~R 58 (315)
T PRK06196 27 KTAIVTG-GYSGL--GLETTRALAQAGAHVIVPAR 58 (315)
T ss_pred CEEEEeC-CCchH--HHHHHHHHHHCCCEEEEEeC
Confidence 3455553 34444 36789999999999987653
No 475
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.66 E-value=1.2e+02 Score=21.01 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=15.1
Q ss_pred HHHHHHHHHCCCeEEEE
Q 040997 21 LEFSQCLAKHGFRVTFV 37 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~ 37 (128)
..+|++|+++|.+|.+.
T Consensus 22 ~a~a~~l~~~G~~v~~~ 38 (261)
T PRK08690 22 YGIAKACREQGAELAFT 38 (261)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 78999999999998875
No 476
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.63 E-value=75 Score=24.74 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
...+|+++-....| |.-|+.|.+.|++||++=
T Consensus 5 ~~~~vaIIGAG~sG-----L~~ar~l~~~g~~v~vfE 36 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAG-----LAAARELLREGHEVVVFE 36 (448)
T ss_pred CCCceEEECcchHH-----HHHHHHHHHCCCCceEEE
Confidence 35678888866667 667899999999999973
No 477
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=29.62 E-value=78 Score=23.53 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCcCChHHHHHHHHHHHHCCC-eEEEE
Q 040997 2 SSPHVLVMPGPAQGHVIPLLEFSQCLAKHGF-RVTFV 37 (128)
Q Consensus 2 ~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~-~Vt~~ 37 (128)
++.+|+++-..+.| -.+++.|++.|+ ++|++
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lv 54 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIA 54 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEE
Confidence 45688998877766 578999999997 77765
No 478
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.61 E-value=55 Score=25.17 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHCCCeEEEEeCcch
Q 040997 19 PLLEFSQCLAKHGFRVTFVNTDYY 42 (128)
Q Consensus 19 P~l~la~~L~~rG~~Vt~~~t~~~ 42 (128)
...-|.++|.+.||+|+++..+-.
T Consensus 342 ta~~l~~~m~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 342 TAMWLYEEMRAEGHQVSLLHGDLT 365 (477)
T ss_pred hHHHHHHHHHhcCceeEEeeccch
Confidence 456788999999999999987744
No 479
>PRK06057 short chain dehydrogenase; Provisional
Probab=29.59 E-value=1.7e+02 Score=19.98 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 3 SPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 3 ~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
..+|++.- +.|.+ =..++++|+++|++|+++.-.
T Consensus 7 ~~~vlItG--asggI--G~~~a~~l~~~G~~v~~~~r~ 40 (255)
T PRK06057 7 GRVAVITG--GGSGI--GLATARRLAAEGATVVVGDID 40 (255)
T ss_pred CCEEEEEC--CCchH--HHHHHHHHHHcCCEEEEEeCC
Confidence 33444433 34444 357889999999999887543
No 480
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.58 E-value=1.6e+02 Score=18.89 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=35.0
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchhhhhhh
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE 48 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~~~~~~ 48 (128)
++|++-..-+-+|-.=---++..|...|++|..+-.......+..
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 467888877789998888888899999999999866655444333
No 481
>PRK06847 hypothetical protein; Provisional
Probab=29.53 E-value=87 Score=22.96 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=21.5
Q ss_pred CCCC-eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEe
Q 040997 1 MSSP-HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 1 m~~~-hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~ 38 (128)
|.+. +|+++-....| +.+|..|+++|++|+++=
T Consensus 1 m~~~~~V~IVGaG~aG-----l~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 1 MAAVKKVLIVGGGIGG-----LSAAIALRRAGIAVDLVE 34 (375)
T ss_pred CCCcceEEEECCCHHH-----HHHHHHHHhCCCCEEEEe
Confidence 4443 57766533223 456667888999999984
No 482
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=29.48 E-value=1.7e+02 Score=19.21 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCc
Q 040997 1 MSSPHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 1 m~~~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~ 40 (128)
|+..-|++--.+|.|=-.=+-.|++.|...|.+|.+...+
T Consensus 1 ~~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 40 (195)
T TIGR00041 1 MRGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP 40 (195)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5555688888999999999999999999999998776544
No 483
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=29.47 E-value=72 Score=23.58 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=21.2
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
..|+++-..-.| +.+|..|+++|++|+++=-
T Consensus 8 ~dViIVGaG~~G-----l~~A~~L~~~G~~v~liE~ 38 (388)
T PRK07494 8 TDIAVIGGGPAG-----LAAAIALARAGASVALVAP 38 (388)
T ss_pred CCEEEECcCHHH-----HHHHHHHhcCCCeEEEEeC
Confidence 357776533223 5667788899999999754
No 484
>PRK07063 short chain dehydrogenase; Provisional
Probab=29.46 E-value=72 Score=21.96 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=16.2
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|.++.-
T Consensus 21 ~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 21 AAIARAFAREGAAVALADL 39 (260)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 6789999999999887654
No 485
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=29.40 E-value=68 Score=19.87 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=16.5
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
.+++++ +-|.+.|.+ ++|.++|.+|.++..
T Consensus 98 ~ivLvS--gD~Df~~~v---~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 98 TIVLVS--GDSDFAPLV---RKLRERGKRVIVVGA 127 (146)
T ss_dssp EEEEE-----GGGHHHH---HHHHHH--EEEEEE-
T ss_pred EEEEEE--CcHHHHHHH---HHHHHcCCEEEEEEe
Confidence 455555 557766554 556688999999884
No 486
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=29.36 E-value=91 Score=25.78 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=28.4
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcchh
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYH 43 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~~~ 43 (128)
+++++. .|.| +.|++.+++.|.++|.+|+++....+.
T Consensus 100 ~~llva-GG~G-iaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (752)
T PRK12778 100 TVVCAG-GGVG-VAPMLPIVKALKAAGNRVITILGGRSK 136 (752)
T ss_pred eEEEEE-CCEe-HHHHHHHHHHHHHCCCeEEEEeccCCH
Confidence 566655 3334 889999999999999999998765544
No 487
>PRK08177 short chain dehydrogenase; Provisional
Probab=29.36 E-value=68 Score=21.58 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.2
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..++++|+++|++|+.+.-.
T Consensus 15 ~~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 15 LGLVDRLLERGWQVTATVRG 34 (225)
T ss_pred HHHHHHHHhCCCEEEEEeCC
Confidence 45799999999999887644
No 488
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=29.35 E-value=1.4e+02 Score=20.70 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.8
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|.++..
T Consensus 24 ~~ia~~l~~~G~~vv~~~~ 42 (265)
T PRK07097 24 FAIAKAYAKAGATIVFNDI 42 (265)
T ss_pred HHHHHHHHHCCCeEEEEeC
Confidence 6889999999999877643
No 489
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=29.34 E-value=1.4e+02 Score=21.73 Aligned_cols=38 Identities=5% Similarity=0.063 Sum_probs=26.4
Q ss_pred eEEEEcC--CCc-CChHHHHHHHHHHHHC--CCeEEEEeCcch
Q 040997 5 HVLVMPG--PAQ-GHVIPLLEFSQCLAKH--GFRVTFVNTDYY 42 (128)
Q Consensus 5 hvl~~p~--p~~-GH~~P~l~la~~L~~r--G~~Vt~~~t~~~ 42 (128)
+|+++.. +.. |=-.=++.+++.|..+ |++|++++....
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~ 44 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDK 44 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCC
Confidence 4555542 333 4336778999999999 899998886543
No 490
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=29.33 E-value=1.5e+02 Score=20.66 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=30.4
Q ss_pred EEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeCcc
Q 040997 6 VLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDY 41 (128)
Q Consensus 6 vl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t~~ 41 (128)
|++.-+||.|=-.=.-.|++.|...|.+|.++....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 677889999999999999999988899888876543
No 491
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=29.29 E-value=45 Score=24.67 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=12.9
Q ss_pred HHHHHHCCCeEEEEe
Q 040997 24 SQCLAKHGFRVTFVN 38 (128)
Q Consensus 24 a~~L~~rG~~Vt~~~ 38 (128)
|+.|+.+|++|+++=
T Consensus 3 A~~L~~~G~~v~vlE 17 (419)
T TIGR03467 3 AVELARAGARVTLFE 17 (419)
T ss_pred HHHHHhCCCceEEEe
Confidence 688999999999973
No 492
>PRK05868 hypothetical protein; Validated
Probab=29.25 E-value=58 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.9
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 040997 21 LEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~ 38 (128)
+.+|..|+++|++||++=
T Consensus 14 l~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 14 TAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred HHHHHHHHhCCCCEEEEc
Confidence 566778899999999974
No 493
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=29.20 E-value=59 Score=23.81 Aligned_cols=18 Identities=22% Similarity=0.665 Sum_probs=15.2
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 040997 21 LEFSQCLAKHGFRVTFVN 38 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~ 38 (128)
+-+|..|+++|++|+++=
T Consensus 12 l~~A~~L~~~G~~v~v~E 29 (385)
T TIGR01988 12 LALALALARSGLKIALIE 29 (385)
T ss_pred HHHHHHHhcCCCEEEEEe
Confidence 567889999999999973
No 494
>PRK06483 dihydromonapterin reductase; Provisional
Probab=29.06 E-value=75 Score=21.50 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.9
Q ss_pred HHHHHHHHHCCCeEEEEeC
Q 040997 21 LEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t 39 (128)
..++++|+++|++|.++.-
T Consensus 16 ~~ia~~l~~~G~~V~~~~r 34 (236)
T PRK06483 16 LALAWHLLAQGQPVIVSYR 34 (236)
T ss_pred HHHHHHHHHCCCeEEEEeC
Confidence 5788999999999988754
No 495
>PRK08862 short chain dehydrogenase; Provisional
Probab=29.01 E-value=71 Score=21.86 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=21.0
Q ss_pred eEEEEcCCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 5 HVLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 5 hvl~~p~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
+.+++.. +.+.+ =..++++|+++|++|.++.-
T Consensus 6 k~~lVtG-as~GI--G~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 6 SIILITS-AGSVL--GRTISCHFARLGATLILCDQ 37 (227)
T ss_pred eEEEEEC-CccHH--HHHHHHHHHHCCCEEEEEcC
Confidence 3444552 33333 45789999999999888643
No 496
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=28.96 E-value=1.9e+02 Score=20.29 Aligned_cols=36 Identities=8% Similarity=0.193 Sum_probs=27.4
Q ss_pred CeEEEEc--CCCcCChHHHHHHHHHHHHCCCeEEEEeC
Q 040997 4 PHVLVMP--GPAQGHVIPLLEFSQCLAKHGFRVTFVNT 39 (128)
Q Consensus 4 ~hvl~~p--~p~~GH~~P~l~la~~L~~rG~~Vt~~~t 39 (128)
.+++.+. -++.|=-.=.+.||..|++.|.+|-++=.
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 3555444 45568888899999999999999988744
No 497
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=28.93 E-value=1.2e+02 Score=17.38 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCcchhh
Q 040997 20 LLEFSQCLAKHGFRVTFVNTDYYHK 44 (128)
Q Consensus 20 ~l~la~~L~~rG~~Vt~~~t~~~~~ 44 (128)
+..|++++..+|..++..+...|..
T Consensus 43 v~~l~~~~~~~g~~~~l~v~~~N~~ 67 (86)
T PF08445_consen 43 VAALARELLERGKTPFLYVDADNEA 67 (86)
T ss_dssp HHHHHHHHHHTTSEEEEEEETT-HH
T ss_pred HHHHHHHHHhCCCcEEEEEECCCHH
Confidence 4578889999999988877766643
No 498
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=28.88 E-value=75 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..++++|+++|++|+++.-.
T Consensus 14 ~aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 14 FNVARELLKKGARVVISSRN 33 (259)
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 56889999999998876543
No 499
>PRK07041 short chain dehydrogenase; Provisional
Probab=28.83 E-value=71 Score=21.42 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCeEEEEeCc
Q 040997 21 LEFSQCLAKHGFRVTFVNTD 40 (128)
Q Consensus 21 l~la~~L~~rG~~Vt~~~t~ 40 (128)
..++++|+++|++|+++.-.
T Consensus 11 ~~~a~~l~~~G~~v~~~~r~ 30 (230)
T PRK07041 11 LALARAFAAEGARVTIASRS 30 (230)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999877654
No 500
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=28.82 E-value=1.9e+02 Score=19.54 Aligned_cols=37 Identities=11% Similarity=0.335 Sum_probs=27.9
Q ss_pred CeEEEEcCCCcCChHHHHHHHHHHHHC---CCeEEEEeCcch
Q 040997 4 PHVLVMPGPAQGHVIPLLEFSQCLAKH---GFRVTFVNTDYY 42 (128)
Q Consensus 4 ~hvl~~p~p~~GH~~P~l~la~~L~~r---G~~Vt~~~t~~~ 42 (128)
.+++++. +..-+.|++.+.+++..+ +.+|+++-...+
T Consensus 105 ~~~vlia--gGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~ 144 (234)
T cd06183 105 KHIGMIA--GGTGITPMLQLIRAILKDPEDKTKISLLYANRT 144 (234)
T ss_pred cEEEEEc--CCcchhHHHHHHHHHHhCcCcCcEEEEEEecCC
Confidence 4667666 556688999999999876 678888776544
Done!