BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040998
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04244|Y4200_ARATH Uncharacterized protein At4g02000 OS=Arabidopsis thaliana
GN=At4g02000 PE=2 SV=1
Length = 314
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/102 (17%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 5 IDSMVAWIKLSNMPHYYYHKKVLPMVGQVMGEVIHIDFNTRSASRRKFVRIAVKIAL-DK 63
+ S+ W+++ +P Y ++ + +G+++ +DF+ + ++ ++R+ ++ + D+
Sbjct: 38 LTSIELWVQMRGIPLLYVCEETALEIAHELGKILTLDFHDSTTTQIAYIRVRIRFGITDR 97
Query: 64 PLCLQFLL----DGRIQKVEYESLPINCFNCGKYGHVSIGCP 101
Q ++ + + +YE L C +C + H CP
Sbjct: 98 LRFFQRIIFDFGEAALISFQYERLRRICSSCFRMTHHRNSCP 139
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 84 PINCFNCGKYGHVSIGCPE 102
P+ C+NCGK+GH+ CPE
Sbjct: 401 PVKCYNCGKFGHMQRQCPE 419
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 84 PINCFNCGKYGHVSIGCPE 102
P+ C+NCGK+GH+ CPE
Sbjct: 401 PVKCYNCGKFGHMQRQCPE 419
>sp|P27978|GAG_SIVVG Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag PE=3 SV=1
Length = 521
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 84 PINCFNCGKYGHVSIGCPE 102
P+ C+NCGK+GH+ CPE
Sbjct: 401 PVKCYNCGKFGHMQRQCPE 419
>sp|P05892|GAG_SIVVT Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag PE=3 SV=1
Length = 519
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 84 PINCFNCGKYGHVSIGCPE 102
P+ C+NCGK+GH+ CPE
Sbjct: 396 PLRCYNCGKFGHMQRQCPE 414
>sp|P27536|POST_XENLA Posterior protein OS=Xenopus laevis GN=po PE=2 SV=1
Length = 555
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 34 MGEVIHIDFNTRSASR-----RKFVRIAVKIALDKPLCLQFLLDGRIQKVEYESLPINCF 88
M ++D+NTR+A R F+ ++ + Q + +K + P C+
Sbjct: 358 MANKCNVDYNTRTALRYATSYNNFIN-TLRDWSQESFEFQRHISVAYKKKQSRRFPRKCY 416
Query: 89 NCGKYGHVSIGC 100
+CGKYGH++ C
Sbjct: 417 SCGKYGHIARFC 428
>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd)
PE=3 SV=1
Length = 2179
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 84 PINCFNCGKYGHVSIGCPEN 103
P +CF CGK GH S CP+N
Sbjct: 1109 PRSCFTCGKIGHFSRNCPQN 1128
>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3
SV=1
Length = 2180
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 84 PINCFNCGKYGHVSIGCPEN 103
P +CF CGK GH S CP+N
Sbjct: 1110 PRSCFTCGKIGHFSRNCPQN 1129
>sp|Q79665|GAG_HV1MV Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag PE=3 SV=3
Length = 498
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 84 PINCFNCGKYGHVSIGC 100
PI CFNCGK GH++ C
Sbjct: 393 PIKCFNCGKEGHIAKNC 409
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 87 CFNCGKYGHVSIGCPEN--GDGEEPQ 110
C+ CG GH+S CP+N G+ E PQ
Sbjct: 107 CYECGDTGHLSYACPKNMLGEREPPQ 132
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 84 PINCFNCGKYGHVSIGC 100
PI CFNCGK GH++ C
Sbjct: 393 PIKCFNCGKEGHIAKNC 409
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2
PE=1 SV=1
Length = 974
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 84 PINCFNCGKYGHVSIGCP------ENGDGEEPQ 110
P CFNCG+ GH S CP E +GE P+
Sbjct: 472 PRGCFNCGEQGHRSNECPNPAKPREGAEGEGPK 504
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 86 NCFNCGKYGHVSIGCPENGDGEEPQ 110
NCFNC + GH S CPE EP+
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPR 282
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 86 NCFNCGKYGHVSIGCPENGDGEEPQ 110
NCFNC + GH S CPE EP+
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPR 396
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 81 ESLPINCFNCGKYGHVSIGCPENGDGEEPQDENGKKT 117
E P+ CFNC GH S CPE G E G ++
Sbjct: 449 ERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRS 485
>sp|Q5SP50|ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Danio rerio GN=zcrb1 PE=2 SV=1
Length = 218
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 55 IAVKIALDKPLCLQFLLDGRIQKVEYESLPINCFNCGKYGHVSIGCPENGDGE 107
+ IA+D +F I+K Y C+ CG+ GH+S CP+N GE
Sbjct: 81 VKASIAIDNGRAAEF-----IRKRNYTDKS-KCYECGEEGHLSYACPKNLLGE 127
>sp|Q7Z6E9|RBBP6_HUMAN E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens GN=RBBP6 PE=1
SV=1
Length = 1792
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 87 CFNCGKYGHVSIGCPENGD 105
CF CGK GH CP NGD
Sbjct: 161 CFRCGKPGHYIKNCPTNGD 179
>sp|O91079|GAG_HV1YF Gag polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag PE=3 SV=3
Length = 512
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 84 PINCFNCGKYGHVSIGC--PENG 104
PI CFNCGK GH++ C P G
Sbjct: 392 PIKCFNCGKEGHLARNCKAPRRG 414
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 84 PINCFNCGKYGHVSIGC 100
PI CFNCGK GH++ C
Sbjct: 392 PIKCFNCGKEGHLARNC 408
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 84 PINCFNCGKYGHVSIGC 100
P+ CFNCGK+GH+ C
Sbjct: 389 PLKCFNCGKFGHMQREC 405
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 87 CFNCGKYGHVSIGCPE 102
C+NCGK+GH+ CPE
Sbjct: 400 CYNCGKFGHMQRQCPE 415
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 55 IAVKIALDKPLCLQFLLDGRIQKVEYESLPINCFNCGKYGHVSIGCPENGDGE 107
I IA+D +F I++ Y C+ CG+ GH+S CP+N GE
Sbjct: 81 IKASIAIDNGRAAEF-----IRRRNYFDKS-KCYECGESGHLSYACPKNMLGE 127
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 55 IAVKIALDKPLCLQFLLDGRIQKVEYESLPINCFNCGKYGHVSIGCPENGDGE 107
I IA+D +F I++ Y C+ CG+ GH+S CP+N GE
Sbjct: 81 IKASIAIDNGRAAEF-----IRRRNYFDKS-KCYECGESGHLSYACPKNMLGE 127
>sp|P97868|RBBP6_MOUSE E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1
SV=5
Length = 1790
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 87 CFNCGKYGHVSIGCPENGD 105
CF CGK GH CP NGD
Sbjct: 162 CFRCGKPGHYIKNCPTNGD 180
>sp|Q02843|GAG_SIVG1 Gag polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag PE=1 SV=1
Length = 513
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 84 PINCFNCGKYGHVSIGC 100
P+ CFNCGK+GH+ C
Sbjct: 389 PLKCFNCGKFGHMQREC 405
>sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag PE=3 SV=1
Length = 520
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 87 CFNCGKYGHVSIGCPE 102
C+NCGK+GH+ CPE
Sbjct: 400 CYNCGKFGHMQRQCPE 415
>sp|A2CI41|FTSI_CHLAT Peptidoglycan synthase ftsI homolog OS=Chlorokybus atmophyticus
GN=ftsI PE=3 SV=1
Length = 679
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 65 LCLQFLLDGRIQKVEYESLPINCFNC-GKYGHVSIGCPENG 104
L LQ LD +QK+ Y++L NC GK G V I P+ G
Sbjct: 215 LSLQLTLDLELQKIAYKALKQGLENCKGKRGTVLILDPKTG 255
>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9 OS=Mus musculus
GN=Zcchc9 PE=2 SV=1
Length = 273
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 87 CFNCGKYGHVSIGCPENGDG 106
CF CG+ GH+S CP+N G
Sbjct: 186 CFVCGEMGHLSRSCPDNTKG 205
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1
PE=1 SV=3
Length = 763
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 86 NCFNCGKYGHVSIGCPENGDGEEPQ 110
NCFNC + GH S CPE EP+
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPR 183
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 81 ESLPINCFNCGKYGHVSIGCPE 102
E P+ CFNC GH S CPE
Sbjct: 238 ERGPMKCFNCKGEGHRSAECPE 259
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 84 PINCFNCGKYGHVSIGCP------ENGDGEEPQ 110
P CFNCG+ GH S CP E +GE P+
Sbjct: 261 PRGCFNCGEQGHRSNECPNPAKPREGVEGEGPK 293
>sp|P05888|GAG_HV1MN Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag PE=1 SV=3
Length = 507
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
I CFNCGK GH++ C
Sbjct: 393 IKCFNCGKEGHIAKNC 408
>sp|P12495|GAG_HV1Z2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag PE=1 SV=3
Length = 501
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
I CFNCGK GH++ C
Sbjct: 392 IKCFNCGKEGHIAKNC 407
>sp|P04592|GAG_HV1EL Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag PE=3 SV=3
Length = 500
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
I CFNCGK GH++ C
Sbjct: 391 IKCFNCGKEGHIAKNC 406
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 55 IAVKIALDKPLCLQFLLDGRIQKVEYESLPINCFNCGKYGHVSIGCPEN 103
I IA+D +F I++ Y C+ CG+ GH+S CP+N
Sbjct: 81 IKASIAIDNGRAAEF-----IRRRNYFDKS-KCYECGESGHLSYACPKN 123
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
I CFNCGK GH++ C
Sbjct: 391 IKCFNCGKEGHIAKNC 406
>sp|P0CI62|QUTR_TALSN Quinate repressor protein OS=Talaromyces stipitatus (strain ATCC
10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=qutR PE=3
SV=1
Length = 820
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 66 CLQFLLDGRIQKVEYESLPINCFNCGKYGHVSI 98
C++ +L+ R + LP++C+N G+YG SI
Sbjct: 445 CVRVVLEAR----KLSDLPVSCYNTGEYGRSSI 473
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
I CFNCGK GH++ C
Sbjct: 393 IKCFNCGKEGHIAKNC 408
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 46 SASRRKFVRIAVKIALDKPLCLQFLLDGRIQKVEYESLPINCFNCGKYGHVSIGCPE 102
+A++ K VR AV + +K L+ + ++ + +S CF CG+ GH+ CP+
Sbjct: 1410 AAAKAKPVRAAVDLGREK--LLRTPTEKWKRQDDRDSREKRCFICGREGHIKKECPQ 1464
>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate KR) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 87 CFNCGKYGHVSIGCPENGDG 106
C+ CGK GHV CPE G
Sbjct: 412 CWKCGKSGHVMANCPERQAG 431
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
I CFNCGK GH++ C
Sbjct: 392 IKCFNCGKEGHIAKNC 407
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
I CFNCGK GH++ C
Sbjct: 394 IKCFNCGKEGHIARNC 409
>sp|P31821|GAG_FIVT2 Gag polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=gag PE=3 SV=1
Length = 449
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 74 RIQKVEYESLPINCFNCGKYGHVSIGCPE 102
R+Q V+ + + CFNC K GH++ C E
Sbjct: 364 RVQTVQTKGPRLVCFNCKKPGHLARQCKE 392
>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag PE=3 SV=3
Length = 498
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
I CFNCGK GH++ C
Sbjct: 394 IKCFNCGKEGHIARNC 409
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
+ CFNCGK GH++ C
Sbjct: 390 VKCFNCGKVGHIAKNC 405
>sp|P38623|RCK2_YEAST Serine/threonine-protein kinase RCK2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RCK2 PE=1 SV=3
Length = 610
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 8 MVAWIKLSNMPHYYYHKKVLPMVGQVMGEVIHIDFNTRSASRRKFVRIAVKI 59
+VA+I YYY + L G++ GE++ + + + SR ++A+ +
Sbjct: 250 IVAFIDFQETDSYYYIIQELLTGGEIFGEIVRLTYFSEDLSRHVIKQLALAV 301
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
+ CFNCGK GH++ C
Sbjct: 389 VKCFNCGKQGHIAKNC 404
>sp|P05890|GAG_HV1RH Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag PE=3 SV=3
Length = 501
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
+ CFNCGK GH++ C
Sbjct: 390 VKCFNCGKVGHIAKNC 405
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
+ CFNCGK GH++ C
Sbjct: 389 VKCFNCGKQGHIAKNC 404
>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens
GN=ZCCHC9 PE=2 SV=2
Length = 271
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 87 CFNCGKYGHVSIGCPENGDG 106
CF CG+ GH+S CP+N G
Sbjct: 186 CFVCGEMGHLSRSCPDNPKG 205
>sp|Q9WC62|GAG_HV1S9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag PE=1 SV=3
Length = 497
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
+ CFNCGK GH++ C
Sbjct: 389 VKCFNCGKQGHIAKNC 404
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 55 IAVKIALDKPLCLQFLLDGRIQKVEYESLPINCFNCGKYGHVSIGCPEN 103
I IA+D +F I++ Y C+ CG+ GH+S CP+N
Sbjct: 81 IKASIAIDNGRAAEF-----IRRRNYFDKS-KCYECGESGHLSYACPKN 123
>sp|Q9WC53|GAG_HV1S2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag PE=3 SV=3
Length = 497
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
+ CFNCGK GH++ C
Sbjct: 389 VKCFNCGKQGHIAKNC 404
>sp|Q73367|GAG_HV1B9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag PE=3 SV=3
Length = 500
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
+ CFNCGK GH++ C
Sbjct: 390 VKCFNCGKEGHIAKNC 405
>sp|P04593|GAG_HV1B5 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag PE=3 SV=3
Length = 512
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 85 INCFNCGKYGHVSIGC 100
+ CFNCGK GH++ C
Sbjct: 390 VKCFNCGKEGHIARNC 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,647,179
Number of Sequences: 539616
Number of extensions: 1752310
Number of successful extensions: 3953
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3601
Number of HSP's gapped (non-prelim): 359
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)