BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041003
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 37/167 (22%)
Query: 1 MNSEMVYR---QKKLHLVLDLDQTLPHA---------------VDIDILASKDRKYLMKQ 42
+ SE V R +K+L L++DLDQT+ HA V+ D+L +D + Q
Sbjct: 5 LESENVKRLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVL--RDVRSFNLQ 62
Query: 43 RGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKC 102
G S + + +K R + +FL+K S++Y++++ T ++YA +AK+++P
Sbjct: 63 EGPSG-------YTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTG 115
Query: 103 EYHISSRLITREDFKEKGKKSGDLVLRQEWG-----VVIVDDTEKVW 144
+ R+++R+D +KS LR+ + VV++DD VW
Sbjct: 116 KL-FQDRVLSRDDSGSLAQKS----LRRLFPCDTSMVVVIDDRGDVW 157
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 37/167 (22%)
Query: 1 MNSEMVYR---QKKLHLVLDLDQTLPHA---------------VDIDILASKDRKYLMKQ 42
+ SE V R +K+L L++ LDQT+ HA V+ D+L +D + Q
Sbjct: 13 LESENVKRLRQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVL--RDVRSFNLQ 70
Query: 43 RGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKC 102
G S + + +K R + +FL+K S++Y++++ T ++YA +AK+++P
Sbjct: 71 EGPSG-------YTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTG 123
Query: 103 EYHISSRLITREDFKEKGKKSGDLVLRQEWG-----VVIVDDTEKVW 144
+ R+++R+D +KS LR+ + VV++DD VW
Sbjct: 124 KL-FQDRVLSRDDSGSLAQKS----LRRLFPCDTSMVVVIDDRGDVW 165
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIR 68
Q ++ +V+DLD+TL H+ + + D ++ G++ +++++K R Y+
Sbjct: 15 QGRICVVIDLDETLVHS-SFKPINNADFIVPIEIEGTTH---------QVYVLK-RPYVD 63
Query: 69 KFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDL-- 126
+FL++ ++++ L T + YA + LL+ +C +RL +G DL
Sbjct: 64 EFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGV-FRARLFRESCVFHQGCYVKDLSR 121
Query: 127 VLRQEWGVVIVDDTEKVWKDHKEHLM--------LLNGALVNVLRVMKTVHG 170
+ R +I+D++ + H E+ + + + L+N++ + + + G
Sbjct: 122 LGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELSG 173
>pdb|3HYI|A Chain A, Crystal Structure Of Full-length Duf199/whia From
Thermatoga Maritima
Length = 295
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 78 YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIV 137
+D+ L + +R + + NP+ YH+ L E K D G++ +
Sbjct: 106 FDVALFVSFLRGLFLSGGSMTNPRYHYHLEINLFEEETLALTRKSLKDF-FNINAGIIEL 164
Query: 138 DDTEKVW-KDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDV 181
+T K++ K K+ L+ L + V R ++ + + E V GDV
Sbjct: 165 RNTRKLYIKSIKDILVFLEA--IGVQRKLEEIDRIVTERKVIGDV 207
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKK 73
+V+DLD+TL H+ +++ D ++ G+ +++++K R ++ +FL++
Sbjct: 31 VVIDLDETLVHS-SFKPISNADFIVPVEIDGT---------IHQVYVLK-RPHVDEFLQR 79
Query: 74 ASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDL--VLRQE 131
++++ L T + YA +A LL+ + +RL +G DL + R+
Sbjct: 80 MGQLFECVLFTASLAKYADPVADLLDRWGVFR--ARLFRESCVFHRGNYVKDLSRLGREL 137
Query: 132 WGVVIVDDTEKVWKDHKEH 150
V+IVD++ + H E+
Sbjct: 138 SKVIIVDNSPASYIFHPEN 156
>pdb|3LIU|A Chain A, Crystal Structure Of Putative Cell Adhesion Protein
(yp_001304840.1) From Parabacteroides Distasonis Atcc
8503 At 2.05 A Resolution
pdb|3LIU|B Chain B, Crystal Structure Of Putative Cell Adhesion Protein
(yp_001304840.1) From Parabacteroides Distasonis Atcc
8503 At 2.05 A Resolution
Length = 402
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 87 IRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVD---DTEKV 143
+ S A+ A + NP+ + S + +E F K + +EWG + D DT
Sbjct: 175 VASIALAGADIGNPENANYESKSFVLKEVFIASAKGVSSVASTEEWGTIEKDFFGDTHFG 234
Query: 144 WKDHKEHLMLL 154
+ D+K L+ L
Sbjct: 235 YLDYKVGLLFL 245
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKF 70
K+ +V+DLD+TL H+ + +++ DG + +++++K R ++ +F
Sbjct: 18 KICVVIDLDETLVHS---SFKPVNNADFIIP---VEIDG----VVHQVYVLK-RPHVDEF 66
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMAKLLN 99
L++ ++++ L T + YA +A LL+
Sbjct: 67 LQRMGELFECVLFTASLAKYADPVADLLD 95
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 102 CEYHISSRLITREDFKEKGKKSGDLVLRQE-------WGVVIVDDTEKVWKDHKEHLMLL 154
C H+ + T EDF+ GK L L E G + +D+ + + D + +
Sbjct: 73 CSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRS 132
Query: 155 NGALVNVLRVMKTVHGLFFENPVCGDVRCFL 185
V V+ K + +F N CGD R L
Sbjct: 133 GSTAVGVMISPKHI---YFIN--CGDSRAVL 158
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKF 70
K+ +V+DLD+TL H+ + +++ DG + +++++K R ++ +F
Sbjct: 14 KICVVIDLDETLVHS---SFKPVNNADFIIP---VEIDG----VVHQVYVLK-RPHVDEF 62
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMAKLLN 99
L++ ++++ L T + YA +A LL+
Sbjct: 63 LQRMGELFECVLFTASLAKYADPVADLLD 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,961,558
Number of Sequences: 62578
Number of extensions: 295364
Number of successful extensions: 901
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 10
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)