BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041003
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4
OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
Length = 440
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 173/320 (54%), Gaps = 47/320 (14%)
Query: 2 NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDG------DLFKMA 55
+S + RQ+KL+LVLDLD TL + + L ++ +YL S DG LF +
Sbjct: 113 DSRFLQRQRKLYLVLDLDHTLLNTTILRDLKPEE-EYLKSHTHSLQDGCNVSGGSLFLLE 171
Query: 56 SELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED 115
+ K+R ++ FLK+AS+M+ +Y+ T R+YA MAKLL+PK EY R+I+R+D
Sbjct: 172 FMQMMTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEY-FGDRVISRDD 230
Query: 116 FKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------------------- 154
+ +KS D+VL QE V+I+DDTE W HK++L+++
Sbjct: 231 GTVRHEKSLDVVLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLS 290
Query: 155 ---------NGALVNVLRVMKTVHGLFFENPVCG----DVRCFLGKIQRQILVRCTLFFS 201
+GAL VL+V+K H LFFEN G DVR L +++++IL C + FS
Sbjct: 291 ELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFS 350
Query: 202 R--DVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLV 259
R K + PL K A ELGA C + SV VV++ +G + R A + K++V
Sbjct: 351 RVFPTKAKPEDHPLWKM-AEELGATCATEVDASVTHVVAMD--VGTEKARWAVREKKYVV 407
Query: 260 HPQWIYAAYYLWSRQVEKDY 279
H WI AA YLW +Q E+++
Sbjct: 408 HRGWIDAANYLWMKQPEENF 427
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis
thaliana GN=CPL3 PE=1 SV=2
Length = 1241
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 151/321 (47%), Gaps = 52/321 (16%)
Query: 6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGD---LFKMASELFLVK 62
++ +KL LVLD+D TL ++ + + S+ + L K+ + LF+ K
Sbjct: 922 MFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREKPYRHLFRFLHMGMWTK 981
Query: 63 VRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITR------EDF 116
+R I FL+KASK+Y+++L T + YA MAKLL+PK + R+I++ D
Sbjct: 982 LRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKG-VLFNGRVISKGDDGDPLDG 1040
Query: 117 KEKGKKSGDL--VLRQEWGVVIVDDTEKVWKDHKEHLMLL-------------------- 154
E+ KS DL V+ E VVI+DD+ +VW HK +L+ +
Sbjct: 1041 DERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFGLLGPSL 1100
Query: 155 ----------NGALVNVLRVMKTVHGLFFENPVCG--DVRCFLGKIQRQILVRCTLFFSR 202
G L + L V++ +H FF + DVR L QR+IL C + FSR
Sbjct: 1101 LELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVDVRNILASEQRKILAGCRIVFSR 1160
Query: 203 DV---DDKEFEFPLLKWRAGE-LGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFL 258
+ + K PL W+ E GA CT + V VV+ S LG A +F+
Sbjct: 1161 IIPVGEAKPHLHPL--WQTAEQFGAVCTTQVDEHVTHVVTNS--LGTDKVNWALTRGRFV 1216
Query: 259 VHPQWIYAAYYLWSRQVEKDY 279
VHP W+ A+ +L+ R E Y
Sbjct: 1217 VHPGWVEASAFLYQRANENLY 1237
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 61.6 bits (148), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Query: 2 NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLV 61
+ + ++R +KL L++DLDQTL H + ++ Q G +
Sbjct: 173 DQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGR---------GEPMLHT 223
Query: 62 KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGK 121
++R + + FL+K +K+Y++++ T R YA +A L+P+ + S R+++R++ +
Sbjct: 224 RLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKL-FSHRILSRDECIDPFS 282
Query: 122 KSGDLVLRQEWG---VVIVDDTEKVWK 145
K+G+L G V I+DD E VWK
Sbjct: 283 KTGNLRNLFPCGDSMVCIIDDREDVWK 309
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus
musculus GN=Ctdp1 PE=1 SV=1
Length = 960
Score = 61.2 bits (147), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Query: 2 NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLV 61
+ + ++R +KL L++DLDQTL H + ++ Q G +
Sbjct: 173 DQQRLHRNRKLVLMVDLDQTLIHTTEQHCPQMSNKGIFHFQLGR---------GEPMLHT 223
Query: 62 KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGK 121
++R + + FL+K +K+Y++++ T R YA +A L+P+ + S R+++R++ +
Sbjct: 224 RLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKL-FSHRILSRDECIDPFS 282
Query: 122 KSGDLVLRQEWG---VVIVDDTEKVWK 145
K+G+L G V I+DD E VWK
Sbjct: 283 KTGNLRNLFPCGDSMVCIIDDREDVWK 309
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase
OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1
SV=1
Length = 411
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 25/156 (16%)
Query: 4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSS-DGDL-FKMASELFLV 61
E + Q KL LVLDLDQT+ H G+SS +G + F + + V
Sbjct: 53 EALEMQMKLILVLDLDQTVLHTT----------------YGTSSLEGTVKFVIDRCRYCV 96
Query: 62 KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKG- 120
K+R + L++ SK+Y+I++ T R+YA + ++++P +Y R+ITR++ +G
Sbjct: 97 KLRPNLDYMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKY-FDDRIITRDE--NQGV 153
Query: 121 --KKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL 154
K+ L +VI+DD VW D+ E+L+L+
Sbjct: 154 LVKRLSRLFPHDHRNIVILDDRPDVW-DYCENLVLI 188
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 37/167 (22%)
Query: 1 MNSEMVYR---QKKLHLVLDLDQTLPHA---------------VDIDILASKDRKYLMKQ 42
+ SE V R +K+L L++DLDQT+ HA V+ D+L +D + Q
Sbjct: 151 LESENVKRLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVL--RDVRSFNLQ 208
Query: 43 RGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKC 102
G S + + +K R + +FL+K S++Y++++ T ++YA +AK+++P
Sbjct: 209 EGPSG-------YTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTG 261
Query: 103 EYHISSRLITREDFKEKGKKSGDLVLRQEWG-----VVIVDDTEKVW 144
+ R+++R+D +KS LR+ + VV++DD VW
Sbjct: 262 KL-FQDRVLSRDDSGSLAQKS----LRRLFPCDTSMVVVIDDRGDVW 303
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=FCP1 PE=1 SV=1
Length = 732
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 4 EMVYRQKKLHLVLDLDQTLPH-AVDIDILASK-------------------DRKYLMKQR 43
E + R KKL LV+DLDQT+ H VD I K D + ++
Sbjct: 167 EHLRRDKKLILVVDLDQTIIHCGVDPTIAEWKNDPNNPNFETLRDVKSFTLDEELVLPLM 226
Query: 44 GSSSDGDLFKMASE---LFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNP 100
+ DG + + + VKVR +++F K + ++++++ T R+YA+ +AK+++P
Sbjct: 227 YMNDDGSMLRPPPVRKCWYYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDP 286
Query: 101 KCEYHISSRLITREDFKEKGKKS-GDLVLRQEWGVVIVDDTEKVWK 145
E R+++R++ KS L + VV++DD VW
Sbjct: 287 TGEL-FGDRILSRDENGSLTTKSLAKLFPTDQSMVVVIDDRGDVWN 331
>sp|P38757|NEM1_YEAST Nuclear envelope morphology protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NEM1 PE=1 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMA------SELFLVK 62
QKK LV+DLD+TL H+ AS+ + +SS G L ++ L+ +
Sbjct: 249 QKKKKLVIDLDETLIHS------ASRSTTH-----SNSSQGHLVEVKFGLSGIRTLYFIH 297
Query: 63 VRSYIRKFLKKASKMYDIYLCTTRIRSYA 91
R Y FL K SK YD+ + T ++ YA
Sbjct: 298 KRPYCDLFLTKVSKWYDLIIFTASMKEYA 326
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKF 70
+ LVLDLD+TL H ++ L + + LF+ V++R + R+F
Sbjct: 287 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMAKLLNPK 101
L++ S+MY+I L T + YA + +L+PK
Sbjct: 336 LERMSQMYEIILFTASKKVYADKLLNILDPK 366
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKF 70
+ LVLDLD+TL H ++ L + + LF+ V++R + R+F
Sbjct: 286 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 334
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMAKLLNPK 101
L++ S+MY+I L T + YA + +L+PK
Sbjct: 335 LERMSQMYEIILFTASKKVYADKLLNILDPK 365
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKF 70
+ LVLDLD+TL H ++ L + + LF+ V++R + R+F
Sbjct: 286 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 334
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMAKLLNPK 101
L++ S+MY+I L T + YA + +L+PK
Sbjct: 335 LERMSQMYEIILFTASKKVYADKLLNILDPK 365
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 37.7 bits (86), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 24/141 (17%)
Query: 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKF 70
+ LVLDLD+TL H ++ L + + LF+ V++R + R+F
Sbjct: 287 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGD 125
L++ S++Y+I L T + YA + +L+PK RL+ F+E +G D
Sbjct: 336 LERMSQIYEIILFTASKKVYADKLLNILDPK------KRLVRHRLFREHCVCVQGNYIKD 389
Query: 126 LVL--RQEWGVVIVDDTEKVW 144
L + R +I+D++ + +
Sbjct: 390 LNILGRDLSKTIIIDNSPQAF 410
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 37.7 bits (86), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 24/141 (17%)
Query: 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKF 70
+ LVLDLD+TL H ++ L + + LF+ V++R + R+F
Sbjct: 287 EFSLVLDLDETLVH-CSLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGD 125
L++ S++Y+I L T + YA + +L+PK RL+ F+E +G D
Sbjct: 336 LERMSQIYEIILFTASKKVYADKLLNILDPK------KRLVRHRLFREHCVCVQGNYIKD 389
Query: 126 LVL--RQEWGVVIVDDTEKVW 144
L + R +I+D++ + +
Sbjct: 390 LNILGRDLSKTIIIDNSPQAF 410
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 37.7 bits (86), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 24/141 (17%)
Query: 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKF 70
+ LVLDLD+TL H ++ L + + LF+ V++R + R+F
Sbjct: 287 EFSLVLDLDETLVH-CSLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGD 125
L++ S++Y+I L T + YA + +L+PK RL+ F+E +G D
Sbjct: 336 LERMSQIYEIILFTASKKVYADKLLNILDPK------KRLVRHRLFREHCVCVQGNYIKD 389
Query: 126 LVL--RQEWGVVIVDDTEKVW 144
L + R +I+D++ + +
Sbjct: 390 LNILGRDLSKTIIIDNSPQAF 410
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKF 70
+ LVLDLD+TL H ++ L + + LF+ V++R + R+F
Sbjct: 287 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMAKLLNPK 101
L++ S++Y+I L T + YA + +L+PK
Sbjct: 336 LERMSQIYEIILFTASKKVYADKLLNILDPK 366
>sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2
OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3
Length = 770
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 17/100 (17%)
Query: 60 LVKVRSY---IRKFLK-KASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED 115
LVK+R +R +L K K +++Y+CT R YA+ M +LL+P E H+ S R+
Sbjct: 255 LVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRLLDP--EAHLISLKELRDR 312
Query: 116 F---KEKGKKSGDLVLRQEWGV------VIVDDTEKVWKD 146
K KKS L+ G+ +++DD KVW+D
Sbjct: 313 IVCVKPDAKKS--LLSVFNGGICHPKMAMVIDDRMKVWED 350
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRK 69
+ LVLDLD+TL H ++ L + + LF+ V++R + R+
Sbjct: 289 PEFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFRE 337
Query: 70 FLKKASKMYDIYLCTTRIRSYAMMMAKLLNPK 101
FL++ S++Y+I L T + YA + +L+PK
Sbjct: 338 FLERMSQIYEIILFTASKKVYADKLLNILDPK 369
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKK 73
LVLDLD+TL H L D ++ +F+ + V++R ++R FL +
Sbjct: 67 LVLDLDETLVHCS----LTPLDNATMVFPV-------VFQNITYQVYVRLRPHLRTFLSR 115
Query: 74 ASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRL 110
+K ++I + T + YA + +L+P+ + HI RL
Sbjct: 116 MAKTFEIIIFTASKKVYANKLCDILDPR-KNHIRHRL 151
>sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1
OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
Length = 967
Score = 37.0 bits (84), Expect = 0.17, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 62 KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGK 121
++RSY+ K K +++Y+CT R YA+ M +LL+P+ ++ L+ R + G
Sbjct: 281 ELRSYLTA---KGRKRFEVYVCTMAERDYALEMWRLLDPEGNLINTNDLLARIVCVKSGF 337
Query: 122 KSG------DLVLRQEWGVVIVDDTEKVWKDHKE 149
K D + +VI DD KVW + +
Sbjct: 338 KKSLFNVFLDGTCHPKMALVI-DDRLKVWDEKDQ 370
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRK 69
+ LVLDLD+TL H ++ L + + LF+ V++R + R+
Sbjct: 280 PEFSLVLDLDETLVHC-SLNELDDAALTFPV----------LFQDVIYQVYVRLRPFFRE 328
Query: 70 FLKKASKMYDIYLCTTRIRSYAMMMAKLLNPK 101
FL++ S++Y+I L T + YA + +L+P+
Sbjct: 329 FLERMSQIYEIILFTASKKVYADKLLNILDPR 360
>sp|Q07949|PSR2_YEAST Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSR2 PE=1 SV=1
Length = 397
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSY 66
++QKK L+LDLD+TL H+ + S D ++ + ++++K R
Sbjct: 224 FQQKKC-LILDLDETLVHSS-FKYMHSADFVLPVE---------IDDQVHNVYVIK-RPG 271
Query: 67 IRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGK--KSG 124
+ +FL + S++Y++ + T + YA + L+P H RL + +G K+
Sbjct: 272 VDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGTIH--HRLFREACYNYEGNYIKNL 329
Query: 125 DLVLRQEWGVVIVDDTEKVWKDHKEHLMLL 154
+ R +I+D++ + H +H + +
Sbjct: 330 SQIGRPLSETIILDNSPASYIFHPQHAVPI 359
>sp|Q91FG9|VF355_IIV6 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 6 GN=IIV6-355R PE=3 SV=1
Length = 182
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLK 72
++ LDLD TL A + + R K+R S D FK + +L+ R Y++ FL
Sbjct: 3 NIFLDLDNTLICAEPFEDITDLGR---FKERASHFD---FKNMEDYYLICGRPYLQPFLD 56
Query: 73 KASKMYDIYLCTTRIRSYAMMM 94
K +++++ T + YA +
Sbjct: 57 YLFKNFNVHIWTAASKGYASFI 78
>sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum
GN=ctdspl2 PE=3 SV=1
Length = 567
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSY 66
+ K+ LVLDLD+TL H + L + + F K R +
Sbjct: 386 HSSPKISLVLDLDETLVHC-STEPLEQPHLTFPV----------FFNNTEYQVFAKKRPF 434
Query: 67 IRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPK 101
+FL K S ++++ + T YA + +++P
Sbjct: 435 FEEFLHKVSDIFEVIIFTASQEVYANKLLNMIDPN 469
>sp|O59718|NEM1_SCHPO Nuclear envelope morphology protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nem1 PE=3 SV=1
Length = 476
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 45/192 (23%)
Query: 14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGS-SSDGDLFKMASE-----LFLVKVRSYI 67
LVLDLD+TL H+V RGS ++ G ++ L+ + R ++
Sbjct: 306 LVLDLDETLIHSV---------------SRGSRTTSGQPIEVHVPGEHPILYYIHKRPHL 350
Query: 68 RKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLV 127
FL S+ + + L T ++ YA +P +Y + I + + + D
Sbjct: 351 DYFLSNVSQWFRLILFTASVQPYA-------DPIIDYLERDKKIFAKRYYRQHCALVDSS 403
Query: 128 LRQEWG--------VVIVDDTEKVWKDHKEHLMLLNGAL-----VNVLRVMKTVHGLFFE 174
++ ++I+D++ + HKE+ + + G + V++L ++ +H L +
Sbjct: 404 FVKDISICNIHLSRIMIIDNSPASYNAHKENAIPIEGWISDPSDVDLLNLLSFLHALQY- 462
Query: 175 NPVCGDVRCFLG 186
DVR LG
Sbjct: 463 ---VHDVRDLLG 471
>sp|Q8JIL9|CNEP1_XENLA CTD nuclear envelope phosphatase 1 OS=Xenopus laevis GN=ctdnep1
PE=1 SV=1
Length = 244
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASE---LFLVKVRSYIRKF 70
LVLDLD+TL H+ +L R G+ D L + + F V R ++ F
Sbjct: 64 LVLDLDETLIHSHHDGVLRPTVRP------GTPPDFILKVVIDKHPVRFFVHKRPHVDFF 117
Query: 71 LKKASKMYDIYLCTTRIRSYAMMMA-KLLNPKCEYHISSRLITREDFKEKGKKSGDLVLR 129
L+ S+ Y++ + T + Y +A KL N K + R + E G DL +
Sbjct: 118 LEVVSQWYELVVFTASMEIYGSAVADKLDNNKGV--LRRRFYRQHCTLELGSYIKDLSVV 175
Query: 130 QE--WGVVIVDDTEKVWKDHKEHLMLL--------NGALVNVLRVMKTVHGLFFENPVCG 179
VVI+D++ ++ H ++ + + + AL+N+L ++ +
Sbjct: 176 HSDLSSVVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALR-------FTA 228
Query: 180 DVRCFLGK 187
DVR L +
Sbjct: 229 DVRSVLSR 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,540,954
Number of Sequences: 539616
Number of extensions: 3781400
Number of successful extensions: 11776
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 11718
Number of HSP's gapped (non-prelim): 40
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)