Query 041003
Match_columns 282
No_of_seqs 241 out of 1476
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 2.4E-47 5.3E-52 368.7 12.3 272 5-280 140-529 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 3.8E-37 8.3E-42 255.1 13.2 147 6-154 1-150 (156)
3 KOG1605 TFIIF-interacting CTD 100.0 9.4E-38 2E-42 275.6 7.6 163 5-188 83-259 (262)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.7E-35 3.6E-40 247.1 13.7 148 11-170 1-159 (162)
5 PF03031 NIF: NLI interacting 100.0 5E-34 1.1E-38 236.9 12.5 147 12-182 1-159 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 100.0 1.3E-31 2.9E-36 228.4 13.8 146 6-187 16-190 (195)
7 KOG2832 TFIIF-interacting CTD 99.9 1.5E-26 3.2E-31 208.6 7.5 149 8-190 186-345 (393)
8 smart00577 CPDc catalytic doma 99.9 2.3E-23 5.1E-28 171.3 12.7 133 10-154 1-138 (148)
9 COG5190 FCP1 TFIIF-interacting 99.8 2.1E-21 4.6E-26 179.7 6.7 159 9-188 210-381 (390)
10 COG5190 FCP1 TFIIF-interacting 99.7 6.1E-18 1.3E-22 156.8 6.4 241 3-266 18-350 (390)
11 PF12738 PTCB-BRCT: twin BRCT 99.6 3.2E-15 7E-20 105.0 6.6 63 196-263 1-63 (63)
12 PF00533 BRCT: BRCA1 C Terminu 99.6 1.4E-14 3E-19 105.2 7.7 77 189-268 2-78 (78)
13 smart00292 BRCT breast cancer 99.4 1.2E-12 2.6E-17 94.1 8.7 79 191-271 1-80 (80)
14 cd00027 BRCT Breast Cancer Sup 99.4 2.6E-12 5.6E-17 90.3 8.4 71 195-269 1-72 (72)
15 KOG3226 DNA repair protein [Re 99.3 6.5E-13 1.4E-17 120.3 4.8 85 191-280 316-400 (508)
16 PLN03122 Poly [ADP-ribose] pol 98.9 2.6E-09 5.7E-14 108.1 8.6 89 189-281 186-277 (815)
17 PLN03123 poly [ADP-ribose] pol 98.8 5.5E-09 1.2E-13 107.8 7.6 89 189-280 390-479 (981)
18 COG4996 Predicted phosphatase 98.6 1.4E-07 3E-12 74.7 6.2 124 13-151 2-139 (164)
19 TIGR01685 MDP-1 magnesium-depe 98.4 1.3E-06 2.9E-11 73.6 8.5 133 12-154 3-153 (174)
20 TIGR01681 HAD-SF-IIIC HAD-supe 98.3 5.6E-07 1.2E-11 72.0 4.2 107 13-143 2-120 (128)
21 PRK14350 ligA NAD-dependent DN 98.3 2.8E-06 6.1E-11 85.2 8.3 72 191-266 592-663 (669)
22 PRK06063 DNA polymerase III su 98.2 3.8E-06 8.1E-11 77.3 7.4 72 192-266 232-303 (313)
23 KOG1929 Nucleotide excision re 98.2 2.5E-06 5.4E-11 86.4 6.3 99 179-281 90-188 (811)
24 KOG1929 Nucleotide excision re 98.2 1.7E-06 3.7E-11 87.5 4.4 98 179-281 480-577 (811)
25 TIGR01684 viral_ppase viral ph 98.1 8.4E-06 1.8E-10 73.7 7.7 78 4-116 119-198 (301)
26 PHA03398 viral phosphatase sup 98.1 1.2E-05 2.6E-10 72.7 8.6 78 4-116 121-200 (303)
27 COG0272 Lig NAD-dependent DNA 98.1 9.2E-06 2E-10 80.2 8.2 72 191-266 593-664 (667)
28 cd01427 HAD_like Haloacid deha 98.1 6.6E-06 1.4E-10 64.3 5.6 62 13-100 1-63 (139)
29 PRK14351 ligA NAD-dependent DN 98.0 1.8E-05 3.9E-10 79.8 9.1 76 191-269 608-683 (689)
30 PRK06195 DNA polymerase III su 98.0 1.8E-05 3.9E-10 72.7 7.8 70 191-262 219-300 (309)
31 PRK07956 ligA NAD-dependent DN 98.0 2.6E-05 5.6E-10 78.5 9.2 74 192-269 590-663 (665)
32 TIGR00575 dnlj DNA ligase, NAD 97.9 2.1E-05 4.5E-10 79.0 7.4 68 191-262 583-650 (652)
33 PLN03243 haloacid dehalogenase 97.9 1.5E-05 3.3E-10 71.5 5.2 81 61-144 108-195 (260)
34 TIGR01422 phosphonatase phosph 97.9 2.3E-05 5E-10 69.5 6.3 80 61-142 98-185 (253)
35 COG5275 BRCT domain type II [G 97.8 4.9E-05 1.1E-09 65.0 6.6 78 186-266 150-227 (276)
36 TIGR01686 FkbH FkbH-like domai 97.8 2.3E-05 5.1E-10 72.3 5.2 106 10-141 2-113 (320)
37 PF12689 Acid_PPase: Acid Phos 97.8 2.2E-05 4.9E-10 65.8 4.5 123 11-144 3-137 (169)
38 KOG3524 Predicted guanine nucl 97.8 6.5E-06 1.4E-10 80.7 1.3 73 190-269 116-188 (850)
39 KOG2481 Protein required for n 97.8 1.6E-05 3.4E-10 75.7 3.3 80 190-281 325-415 (570)
40 KOG0966 ATP-dependent DNA liga 97.8 0.00011 2.3E-09 73.5 9.0 84 191-276 632-716 (881)
41 TIGR01662 HAD-SF-IIIA HAD-supe 97.7 0.00017 3.7E-09 57.3 8.2 102 13-145 2-119 (132)
42 TIGR01656 Histidinol-ppas hist 97.7 9.3E-05 2E-09 60.4 6.6 105 12-141 1-128 (147)
43 TIGR01549 HAD-SF-IA-v1 haloaci 97.7 3.1E-05 6.7E-10 63.1 3.6 77 60-141 62-144 (154)
44 KOG4362 Transcriptional regula 97.6 9.5E-05 2.1E-09 73.3 6.5 81 195-281 478-562 (684)
45 PHA02530 pseT polynucleotide k 97.6 6.3E-05 1.4E-09 68.4 4.9 120 9-152 156-290 (300)
46 TIGR01261 hisB_Nterm histidino 97.6 0.00017 3.6E-09 60.1 6.7 103 12-141 2-130 (161)
47 PRK13478 phosphonoacetaldehyde 97.6 0.00013 2.8E-09 65.4 6.1 80 61-142 100-187 (267)
48 TIGR00213 GmhB_yaeD D,D-heptos 97.6 0.00028 6.1E-09 59.3 7.4 77 61-142 25-134 (176)
49 PRK08942 D,D-heptose 1,7-bisph 97.5 0.0004 8.8E-09 58.5 8.3 101 11-141 3-130 (181)
50 TIGR01672 AphA HAD superfamily 97.5 0.00037 8E-09 61.7 8.0 104 4-115 56-169 (237)
51 KOG3548 DNA damage checkpoint 97.5 0.00013 2.8E-09 73.8 5.4 91 185-280 917-1034(1176)
52 KOG2043 Signaling protein SWIF 97.5 0.00019 4.2E-09 73.9 6.3 79 196-281 660-738 (896)
53 PF05152 DUF705: Protein of un 97.5 0.00043 9.2E-09 62.1 7.5 79 4-116 115-194 (297)
54 TIGR01664 DNA-3'-Pase DNA 3'-p 97.4 0.00059 1.3E-08 57.1 7.9 103 11-141 13-137 (166)
55 PLN02940 riboflavin kinase 97.4 0.0002 4.3E-09 67.8 4.5 81 61-144 92-180 (382)
56 PHA02597 30.2 hypothetical pro 97.3 0.0002 4.3E-09 61.0 3.9 81 61-145 73-159 (197)
57 TIGR00338 serB phosphoserine p 97.2 0.00019 4.1E-09 62.0 2.7 80 61-142 84-179 (219)
58 COG5163 NOP7 Protein required 97.2 0.00046 1E-08 64.1 5.1 92 178-281 333-439 (591)
59 PF13419 HAD_2: Haloacid dehal 97.2 0.00076 1.6E-08 55.0 5.7 83 59-144 74-163 (176)
60 PRK08238 hypothetical protein; 97.0 0.0041 8.8E-08 60.6 9.9 119 62-190 72-200 (479)
61 PRK11009 aphA acid phosphatase 97.0 0.0023 5E-08 56.6 6.9 99 4-105 56-163 (237)
62 TIGR01668 YqeG_hyp_ppase HAD s 96.9 0.0019 4.2E-08 54.0 5.9 100 5-146 19-125 (170)
63 TIGR01533 lipo_e_P4 5'-nucleot 96.9 0.0059 1.3E-07 55.0 9.3 116 8-144 72-201 (266)
64 TIGR02253 CTE7 HAD superfamily 96.9 0.0013 2.7E-08 56.8 4.4 79 60-141 92-177 (221)
65 PRK05446 imidazole glycerol-ph 96.8 0.0052 1.1E-07 57.6 8.5 104 10-141 1-131 (354)
66 TIGR01663 PNK-3'Pase polynucle 96.7 0.004 8.7E-08 61.2 6.8 106 9-141 166-294 (526)
67 TIGR02254 YjjG/YfnB HAD superf 96.7 0.0029 6.2E-08 54.5 5.1 78 61-141 96-180 (224)
68 COG2179 Predicted hydrolase of 96.6 0.0059 1.3E-07 50.7 6.2 107 2-147 19-128 (175)
69 PLN02770 haloacid dehalogenase 96.5 0.0043 9.4E-08 55.0 5.2 80 60-142 106-192 (248)
70 TIGR01449 PGP_bact 2-phosphogl 96.5 0.0043 9.3E-08 53.1 5.0 82 60-144 83-171 (213)
71 PRK09449 dUMP phosphatase; Pro 96.5 0.0041 8.9E-08 53.8 4.9 78 61-141 94-178 (224)
72 PRK06769 hypothetical protein; 96.5 0.0053 1.2E-07 51.5 5.4 77 62-141 28-120 (173)
73 TIGR01509 HAD-SF-IA-v3 haloaci 96.5 0.0049 1.1E-07 51.1 5.1 78 61-142 84-168 (183)
74 TIGR01428 HAD_type_II 2-haloal 96.5 0.0038 8.1E-08 53.0 4.5 79 61-142 91-176 (198)
75 COG0546 Gph Predicted phosphat 96.4 0.0039 8.5E-08 54.2 4.5 79 61-142 88-173 (220)
76 PRK13288 pyrophosphatase PpaX; 96.3 0.0062 1.4E-07 52.4 5.2 82 60-144 80-168 (214)
77 TIGR01454 AHBA_synth_RP 3-amin 96.2 0.008 1.7E-07 51.3 5.2 82 60-144 73-161 (205)
78 TIGR01993 Pyr-5-nucltdase pyri 96.2 0.0054 1.2E-07 51.5 3.8 77 61-142 83-169 (184)
79 COG1011 Predicted hydrolase (H 96.1 0.0096 2.1E-07 51.4 5.0 81 61-144 98-184 (229)
80 PF08645 PNK3P: Polynucleotide 96.0 0.0069 1.5E-07 50.2 3.5 52 13-86 2-54 (159)
81 PRK13222 phosphoglycolate phos 95.9 0.015 3.2E-07 50.2 5.3 82 60-144 91-179 (226)
82 PRK09456 ?-D-glucose-1-phospha 95.8 0.0072 1.6E-07 51.5 3.2 84 59-144 81-171 (199)
83 PRK14988 GMP/IMP nucleotidase; 95.8 0.011 2.4E-07 51.6 4.1 81 61-144 92-179 (224)
84 PLN02575 haloacid dehalogenase 95.7 0.019 4.1E-07 54.3 5.4 82 61-145 215-303 (381)
85 PRK10725 fructose-1-P/6-phosph 95.6 0.012 2.5E-07 49.4 3.6 81 61-145 87-173 (188)
86 PRK10826 2-deoxyglucose-6-phos 95.6 0.015 3.2E-07 50.4 4.2 82 61-145 91-179 (222)
87 PRK13226 phosphoglycolate phos 95.6 0.023 5.1E-07 49.6 5.5 81 60-143 93-180 (229)
88 PRK11587 putative phosphatase; 95.6 0.022 4.7E-07 49.2 5.2 80 60-143 81-167 (218)
89 PRK10563 6-phosphogluconate ph 95.6 0.01 2.2E-07 51.2 3.1 82 60-145 86-173 (221)
90 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.6 0.02 4.3E-07 50.5 5.0 72 5-114 3-77 (242)
91 TIGR01689 EcbF-BcbF capsule bi 95.6 0.034 7.4E-07 44.4 5.7 49 63-113 25-86 (126)
92 TIGR03351 PhnX-like phosphonat 95.5 0.023 5.1E-07 48.9 5.2 79 61-141 86-173 (220)
93 PF09419 PGP_phosphatase: Mito 95.5 0.053 1.1E-06 45.4 6.8 100 6-147 36-154 (168)
94 PF13344 Hydrolase_6: Haloacid 95.4 0.04 8.6E-07 42.1 5.4 35 64-98 16-51 (101)
95 TIGR01544 HAD-SF-IE haloacid d 95.2 0.043 9.3E-07 49.6 6.0 94 60-154 119-239 (277)
96 TIGR02009 PGMB-YQAB-SF beta-ph 95.1 0.019 4.2E-07 47.8 3.1 79 61-144 87-172 (185)
97 PRK13223 phosphoglycolate phos 95.0 0.04 8.7E-07 49.6 5.2 79 61-142 100-185 (272)
98 TIGR02252 DREG-2 REG-2-like, H 95.0 0.04 8.6E-07 46.8 4.8 77 61-141 104-187 (203)
99 PRK09552 mtnX 2-hydroxy-3-keto 94.9 0.065 1.4E-06 46.4 6.1 38 61-98 73-111 (219)
100 TIGR01691 enolase-ppase 2,3-di 94.8 0.05 1.1E-06 47.6 4.9 83 60-144 93-182 (220)
101 TIGR01548 HAD-SF-IA-hyp1 haloa 94.7 0.067 1.4E-06 45.4 5.6 77 62-141 106-188 (197)
102 PLN02779 haloacid dehalogenase 94.7 0.036 7.7E-07 50.3 4.1 84 61-145 143-233 (286)
103 TIGR03333 salvage_mtnX 2-hydro 94.7 0.079 1.7E-06 45.7 5.9 46 60-105 68-114 (214)
104 TIGR01670 YrbI-phosphatas 3-de 94.6 0.11 2.4E-06 42.6 6.4 98 13-141 3-102 (154)
105 TIGR02247 HAD-1A3-hyp Epoxide 94.3 0.029 6.4E-07 48.0 2.4 82 60-144 92-182 (211)
106 PRK00192 mannosyl-3-phosphogly 94.3 0.09 2E-06 47.1 5.7 57 11-101 4-61 (273)
107 PRK13225 phosphoglycolate phos 93.9 0.09 1.9E-06 47.5 4.9 79 61-142 141-223 (273)
108 COG0637 Predicted phosphatase/ 93.9 0.044 9.5E-07 47.8 2.7 81 60-143 84-171 (221)
109 COG0560 SerB Phosphoserine pho 93.7 0.047 1E-06 47.4 2.5 42 61-102 76-118 (212)
110 TIGR01493 HAD-SF-IA-v2 Haloaci 93.7 0.019 4.2E-07 47.5 0.1 72 61-141 89-166 (175)
111 PLN02811 hydrolase 93.5 0.073 1.6E-06 46.1 3.5 82 61-145 77-171 (220)
112 KOG3524 Predicted guanine nucl 93.4 0.025 5.5E-07 56.2 0.4 93 182-280 200-292 (850)
113 PF08282 Hydrolase_3: haloacid 93.4 0.16 3.5E-06 43.7 5.5 52 14-99 1-53 (254)
114 TIGR01990 bPGM beta-phosphoglu 93.3 0.091 2E-06 43.7 3.5 79 61-144 86-171 (185)
115 TIGR01491 HAD-SF-IB-PSPlk HAD- 93.2 0.14 3E-06 43.1 4.5 79 61-141 79-173 (201)
116 COG0561 Cof Predicted hydrolas 93.1 0.24 5.2E-06 44.0 6.2 58 11-102 3-61 (264)
117 TIGR01489 DKMTPPase-SF 2,3-dik 93.1 0.19 4.1E-06 41.7 5.1 40 61-100 71-111 (188)
118 PRK11133 serB phosphoserine ph 93.0 0.047 1E-06 50.5 1.5 41 61-101 180-221 (322)
119 TIGR01456 CECR5 HAD-superfamil 92.8 0.22 4.8E-06 45.9 5.7 52 12-98 1-61 (321)
120 TIGR02461 osmo_MPG_phos mannos 92.8 0.23 4.9E-06 43.4 5.4 36 65-100 18-54 (225)
121 PLN02919 haloacid dehalogenase 92.7 0.18 3.9E-06 53.9 5.6 81 63-145 162-249 (1057)
122 PRK13582 thrH phosphoserine ph 92.6 0.2 4.3E-06 42.5 4.8 45 60-105 66-110 (205)
123 PRK05601 DNA polymerase III su 92.5 0.26 5.6E-06 46.3 5.6 75 192-269 294-368 (377)
124 TIGR02463 MPGP_rel mannosyl-3- 92.3 0.27 5.8E-06 42.4 5.3 35 67-101 21-56 (221)
125 PRK06698 bifunctional 5'-methy 92.2 0.23 5.1E-06 48.0 5.3 77 61-142 329-411 (459)
126 TIGR01675 plant-AP plant acid 92.1 0.69 1.5E-05 40.7 7.6 119 8-145 74-210 (229)
127 PRK09484 3-deoxy-D-manno-octul 92.1 0.28 6E-06 41.4 4.9 60 76-141 63-122 (183)
128 PF11019 DUF2608: Protein of u 91.9 0.66 1.4E-05 41.4 7.4 92 10-102 19-122 (252)
129 KOG3109 Haloacid dehalogenase- 91.8 0.21 4.5E-06 43.5 3.8 81 61-145 99-192 (244)
130 TIGR00099 Cof-subfamily Cof su 91.8 0.37 7.9E-06 42.5 5.6 54 14-101 2-56 (256)
131 TIGR01484 HAD-SF-IIB HAD-super 91.7 0.36 7.9E-06 40.9 5.3 35 64-98 19-54 (204)
132 PRK10513 sugar phosphate phosp 91.6 0.44 9.6E-06 42.3 6.0 57 11-101 3-60 (270)
133 TIGR01487 SPP-like sucrose-pho 91.6 0.44 9.5E-06 40.9 5.7 56 13-102 3-59 (215)
134 PRK03669 mannosyl-3-phosphogly 91.5 0.51 1.1E-05 42.2 6.4 58 9-100 5-63 (271)
135 PRK10187 trehalose-6-phosphate 91.3 0.41 8.9E-06 43.0 5.4 59 11-98 14-74 (266)
136 smart00775 LNS2 LNS2 domain. T 91.1 0.43 9.3E-06 39.4 5.0 57 13-92 1-58 (157)
137 KOG0966 ATP-dependent DNA liga 90.9 0.97 2.1E-05 46.1 8.0 67 214-280 805-881 (881)
138 PRK10530 pyridoxal phosphate ( 90.4 0.79 1.7E-05 40.6 6.4 56 12-101 4-60 (272)
139 PRK10444 UMP phosphatase; Prov 90.3 0.55 1.2E-05 41.7 5.3 51 13-98 3-54 (248)
140 TIGR01486 HAD-SF-IIB-MPGP mann 89.8 0.64 1.4E-05 41.1 5.3 53 14-100 2-55 (256)
141 PRK01158 phosphoglycolate phos 89.6 0.92 2E-05 39.1 6.1 56 12-101 4-60 (230)
142 TIGR01452 PGP_euk phosphoglyco 89.4 0.8 1.7E-05 41.2 5.7 40 13-87 4-44 (279)
143 TIGR01458 HAD-SF-IIA-hyp3 HAD- 89.1 0.65 1.4E-05 41.4 4.8 46 13-89 3-49 (257)
144 TIGR00685 T6PP trehalose-phosp 89.0 0.36 7.9E-06 42.5 3.1 53 9-90 1-53 (244)
145 TIGR01482 SPP-subfamily Sucros 88.5 0.78 1.7E-05 39.4 4.8 13 14-26 1-13 (225)
146 PRK15126 thiamin pyrimidine py 88.5 1.1 2.3E-05 40.0 5.8 15 12-26 3-17 (272)
147 TIGR01485 SPP_plant-cyano sucr 88.4 0.94 2E-05 39.9 5.3 15 11-25 1-15 (249)
148 PLN02645 phosphoglycolate phos 88.2 0.81 1.8E-05 42.0 4.9 58 5-98 23-81 (311)
149 PRK10976 putative hydrolase; P 87.8 1.3 2.8E-05 39.2 5.9 15 12-26 3-17 (266)
150 TIGR02137 HSK-PSP phosphoserin 87.6 0.74 1.6E-05 39.6 4.0 49 61-111 67-115 (203)
151 COG0647 NagD Predicted sugar p 87.0 0.99 2.2E-05 40.7 4.6 53 11-98 8-61 (269)
152 PLN02423 phosphomannomutase 86.9 1.4 3.1E-05 38.9 5.5 18 9-26 5-22 (245)
153 PRK10748 flavin mononucleotide 86.7 0.68 1.5E-05 40.6 3.4 77 61-145 112-196 (238)
154 COG4502 5'(3')-deoxyribonucleo 86.5 1.1 2.4E-05 36.4 4.1 30 61-90 67-96 (180)
155 TIGR01488 HAD-SF-IB Haloacid D 86.5 1.4 3.1E-05 36.0 5.1 47 61-109 72-119 (177)
156 COG3882 FkbH Predicted enzyme 86.5 0.37 8E-06 46.6 1.6 109 7-145 218-341 (574)
157 COG4359 Uncharacterized conser 86.4 2.1 4.5E-05 36.5 5.9 39 61-99 72-111 (220)
158 PLN02887 hydrolase family prot 86.4 1.5 3.3E-05 43.9 5.9 64 3-100 300-364 (580)
159 COG1877 OtsB Trehalose-6-phosp 86.1 1.5 3.3E-05 39.5 5.3 64 4-96 11-76 (266)
160 PTZ00174 phosphomannomutase; P 85.9 1.4 3.1E-05 38.8 5.0 17 11-27 5-21 (247)
161 TIGR02244 HAD-IG-Ncltidse HAD 85.8 1 2.2E-05 42.1 4.1 44 56-99 178-223 (343)
162 PTZ00445 p36-lilke protein; Pr 85.7 0.71 1.5E-05 40.1 2.8 67 5-90 37-104 (219)
163 COG2503 Predicted secreted aci 85.3 0.42 9.2E-06 42.2 1.3 81 6-99 74-161 (274)
164 TIGR01457 HAD-SF-IIA-hyp2 HAD- 85.1 1.8 3.8E-05 38.4 5.2 47 209-264 179-225 (249)
165 PLN02151 trehalose-phosphatase 84.9 1.9 4E-05 40.5 5.4 62 6-96 93-154 (354)
166 PLN03017 trehalose-phosphatase 84.8 2.1 4.5E-05 40.4 5.7 62 6-96 106-167 (366)
167 TIGR01680 Veg_Stor_Prot vegeta 84.5 5.8 0.00013 35.9 8.2 81 64-145 147-236 (275)
168 TIGR01460 HAD-SF-IIA Haloacid 84.5 1.2 2.6E-05 39.0 3.9 49 14-97 1-54 (236)
169 COG0241 HisB Histidinol phosph 84.3 2 4.3E-05 36.5 4.9 104 11-141 5-132 (181)
170 PF03767 Acid_phosphat_B: HAD 83.9 0.64 1.4E-05 40.9 1.8 86 9-102 70-156 (229)
171 PLN02382 probable sucrose-phos 83.5 1.8 3.9E-05 41.5 4.8 23 3-25 1-23 (413)
172 PRK12702 mannosyl-3-phosphogly 83.3 2.9 6.2E-05 38.3 5.8 56 12-101 2-58 (302)
173 COG3769 Predicted hydrolase (H 82.3 4.3 9.3E-05 35.6 6.1 62 9-105 5-67 (274)
174 PLN02580 trehalose-phosphatase 82.2 2.6 5.7E-05 40.0 5.3 62 6-96 114-175 (384)
175 PLN02954 phosphoserine phospha 82.0 2.1 4.6E-05 36.7 4.4 45 61-105 83-129 (224)
176 TIGR01548 HAD-SF-IA-hyp1 haloa 81.7 0.73 1.6E-05 38.9 1.3 15 13-27 2-16 (197)
177 TIGR01993 Pyr-5-nucltdase pyri 81.6 0.77 1.7E-05 38.2 1.4 15 13-27 2-16 (184)
178 PRK10725 fructose-1-P/6-phosph 81.4 0.87 1.9E-05 37.9 1.7 42 209-260 143-184 (188)
179 PRK11587 putative phosphatase; 80.2 0.94 2E-05 39.0 1.5 16 12-27 4-19 (218)
180 PRK14502 bifunctional mannosyl 79.4 4 8.7E-05 41.5 5.8 58 9-100 414-472 (694)
181 PRK14501 putative bifunctional 78.3 3.6 7.9E-05 42.3 5.3 63 7-98 488-552 (726)
182 TIGR02253 CTE7 HAD superfamily 77.8 1.2 2.7E-05 38.0 1.5 17 12-28 3-19 (221)
183 PRK13288 pyrophosphatase PpaX; 77.3 1.3 2.9E-05 37.8 1.6 16 12-27 4-19 (214)
184 TIGR02252 DREG-2 REG-2-like, H 76.4 1.6 3.4E-05 36.8 1.8 15 13-27 2-16 (203)
185 PRK13223 phosphoglycolate phos 76.2 1.5 3.2E-05 39.4 1.6 18 11-28 13-30 (272)
186 PRK11590 hypothetical protein; 76.0 1.6 3.4E-05 37.6 1.6 39 61-99 94-134 (211)
187 PRK13226 phosphoglycolate phos 75.3 1.5 3.3E-05 38.1 1.4 47 209-265 152-198 (229)
188 TIGR03351 PhnX-like phosphonat 75.0 1.7 3.8E-05 37.1 1.7 16 12-27 2-17 (220)
189 TIGR01454 AHBA_synth_RP 3-amin 73.9 1.3 2.7E-05 37.6 0.5 14 14-27 1-14 (205)
190 TIGR02009 PGMB-YQAB-SF beta-ph 73.8 1.7 3.6E-05 35.9 1.2 16 12-27 2-17 (185)
191 TIGR01990 bPGM beta-phosphoglu 73.8 1.5 3.2E-05 36.3 0.9 15 13-27 1-15 (185)
192 PF06941 NT5C: 5' nucleotidase 73.4 2.3 5E-05 35.9 2.0 78 61-151 72-155 (191)
193 PLN02770 haloacid dehalogenase 72.9 1.8 3.9E-05 38.2 1.3 16 12-27 23-38 (248)
194 TIGR01490 HAD-SF-IB-hyp1 HAD-s 72.6 4.9 0.00011 33.7 3.8 48 61-110 86-134 (202)
195 PRK10748 flavin mononucleotide 72.3 2 4.4E-05 37.5 1.5 16 12-27 11-26 (238)
196 TIGR01493 HAD-SF-IA-v2 Haloaci 71.6 1.9 4.2E-05 35.3 1.1 14 14-27 2-15 (175)
197 TIGR01509 HAD-SF-IA-v3 haloaci 71.4 1.9 4.1E-05 35.3 1.0 15 13-27 1-15 (183)
198 PF13419 HAD_2: Haloacid dehal 71.3 2.1 4.5E-05 34.3 1.2 14 14-27 1-14 (176)
199 PRK13225 phosphoglycolate phos 71.2 2 4.3E-05 38.8 1.1 17 11-27 62-78 (273)
200 TIGR01449 PGP_bact 2-phosphogl 71.1 1.6 3.5E-05 37.0 0.5 45 209-263 142-186 (213)
201 PRK10826 2-deoxyglucose-6-phos 70.4 2.5 5.5E-05 36.3 1.6 18 10-27 6-23 (222)
202 PRK14988 GMP/IMP nucleotidase; 70.3 2.4 5.3E-05 36.8 1.5 16 11-26 10-25 (224)
203 PRK11590 hypothetical protein; 69.6 7.2 0.00016 33.4 4.3 17 10-26 5-21 (211)
204 TIGR01489 DKMTPPase-SF 2,3-dik 69.4 2.8 6.1E-05 34.5 1.6 17 11-27 1-17 (188)
205 TIGR01491 HAD-SF-IB-PSPlk HAD- 69.2 3.1 6.7E-05 34.7 1.9 16 11-26 4-19 (201)
206 KOG3548 DNA damage checkpoint 69.1 10 0.00022 39.8 5.6 97 177-275 1044-1159(1176)
207 TIGR01428 HAD_type_II 2-haloal 69.1 2.4 5.3E-05 35.6 1.2 15 13-27 3-17 (198)
208 PRK13222 phosphoglycolate phos 68.2 2.6 5.7E-05 35.9 1.2 16 12-27 7-22 (226)
209 PLN02779 haloacid dehalogenase 68.2 3.1 6.6E-05 37.7 1.7 15 12-26 41-55 (286)
210 TIGR02254 YjjG/YfnB HAD superf 67.8 2.7 5.9E-05 35.7 1.2 15 13-27 3-17 (224)
211 COG4850 Uncharacterized conser 67.3 19 0.00041 33.4 6.5 118 7-142 157-288 (373)
212 TIGR02247 HAD-1A3-hyp Epoxide 67.2 3.2 7E-05 35.2 1.6 14 13-26 4-17 (211)
213 TIGR01545 YfhB_g-proteo haloac 66.7 8.7 0.00019 33.1 4.2 37 61-97 93-131 (210)
214 TIGR01511 ATPase-IB1_Cu copper 65.1 15 0.00033 36.6 6.1 42 60-101 403-445 (562)
215 PF00702 Hydrolase: haloacid d 64.1 16 0.00035 30.5 5.3 77 59-141 124-205 (215)
216 PRK09449 dUMP phosphatase; Pro 64.0 3.4 7.3E-05 35.4 1.1 46 209-262 151-196 (224)
217 PF05116 S6PP: Sucrose-6F-phos 63.6 9.9 0.00021 33.6 4.0 54 11-98 2-56 (247)
218 PRK10563 6-phosphogluconate ph 63.4 4 8.6E-05 34.9 1.4 17 11-27 4-20 (221)
219 KOG2134 Polynucleotide kinase 62.8 14 0.00031 35.0 4.9 56 10-87 74-130 (422)
220 COG0637 Predicted phosphatase/ 62.2 3.8 8.3E-05 35.5 1.1 17 12-28 3-19 (221)
221 PLN02575 haloacid dehalogenase 61.6 4.7 0.0001 38.2 1.7 19 9-27 129-147 (381)
222 PF12710 HAD: haloacid dehalog 61.1 12 0.00026 30.7 4.0 39 63-101 86-129 (192)
223 PRK06698 bifunctional 5'-methy 61.0 3.8 8.2E-05 39.7 0.9 16 12-27 242-257 (459)
224 PRK13582 thrH phosphoserine ph 60.3 4.8 0.0001 33.9 1.4 11 13-23 3-13 (205)
225 PRK09552 mtnX 2-hydroxy-3-keto 58.8 5.6 0.00012 34.2 1.5 17 11-27 3-19 (219)
226 TIGR01512 ATPase-IB2_Cd heavy 58.5 12 0.00026 37.0 4.0 76 59-142 359-436 (536)
227 PLN02954 phosphoserine phospha 58.0 5.9 0.00013 33.9 1.5 17 11-27 12-28 (224)
228 TIGR02726 phenyl_P_delta pheny 57.2 46 0.001 27.7 6.8 101 11-141 7-108 (169)
229 KOG3120 Predicted haloacid deh 57.0 13 0.00029 32.6 3.5 41 61-101 83-125 (256)
230 TIGR02137 HSK-PSP phosphoserin 56.7 5.7 0.00012 34.1 1.2 12 14-25 4-15 (203)
231 PF05822 UMPH-1: Pyrimidine 5' 56.5 21 0.00046 31.8 4.8 40 59-98 87-127 (246)
232 KOG1615 Phosphoserine phosphat 55.4 38 0.00082 29.3 5.9 41 61-101 87-128 (227)
233 KOG4362 Transcriptional regula 54.9 18 0.00039 36.8 4.5 87 186-274 581-681 (684)
234 TIGR02471 sucr_syn_bact_C sucr 54.7 5.7 0.00012 34.5 0.9 12 14-25 2-13 (236)
235 PF08235 LNS2: LNS2 (Lipin/Ned 54.5 27 0.00059 28.9 4.8 63 13-98 1-64 (157)
236 COG1011 Predicted hydrolase (H 52.7 8.4 0.00018 32.8 1.7 18 10-27 3-20 (229)
237 PLN03063 alpha,alpha-trehalose 51.8 25 0.00055 36.7 5.2 66 6-97 502-569 (797)
238 PF05761 5_nucleotid: 5' nucle 51.2 31 0.00066 33.6 5.4 45 56-100 177-223 (448)
239 PRK09456 ?-D-glucose-1-phospha 50.6 8.6 0.00019 32.4 1.4 53 201-263 134-186 (199)
240 PF06888 Put_Phosphatase: Puta 50.6 30 0.00064 30.6 4.8 43 60-102 69-114 (234)
241 PLN02205 alpha,alpha-trehalose 50.4 15 0.00033 38.6 3.4 60 7-97 592-653 (854)
242 TIGR01525 ATPase-IB_hvy heavy 48.4 23 0.00049 35.3 4.1 75 59-141 381-457 (556)
243 PLN03064 alpha,alpha-trehalose 47.7 33 0.00072 36.5 5.3 74 5-98 585-660 (934)
244 PF02358 Trehalose_PPase: Treh 47.4 25 0.00055 30.5 3.9 50 15-93 1-52 (235)
245 TIGR01545 YfhB_g-proteo haloac 47.0 11 0.00024 32.5 1.5 18 11-28 5-22 (210)
246 cd02514 GT13_GLCNAC-TI GT13_GL 43.7 29 0.00064 32.3 3.8 86 59-145 6-112 (334)
247 COG3700 AphA Acid phosphatase 42.2 18 0.00038 30.8 1.9 104 4-141 56-170 (237)
248 PF05221 AdoHcyase: S-adenosyl 40.3 31 0.00067 31.1 3.3 35 189-226 37-71 (268)
249 KOG2914 Predicted haloacid-hal 38.8 34 0.00075 29.9 3.3 85 59-145 89-183 (222)
250 cd01615 CIDE_N CIDE_N domain, 38.6 38 0.00083 24.6 2.9 19 9-27 38-56 (78)
251 PF06941 NT5C: 5' nucleotidase 37.8 18 0.00039 30.4 1.3 18 10-27 1-18 (191)
252 cd06537 CIDE_N_B CIDE_N domain 37.8 37 0.0008 24.9 2.8 19 9-27 37-55 (81)
253 PF05991 NYN_YacP: YacP-like N 37.1 2E+02 0.0044 23.7 7.6 67 191-270 63-129 (166)
254 smart00266 CAD Domains present 35.6 45 0.00097 24.0 2.9 18 10-27 37-54 (74)
255 PF02017 CIDE-N: CIDE-N domain 34.4 44 0.00096 24.3 2.7 17 10-26 39-55 (78)
256 KOG2093 Translesion DNA polyme 33.7 67 0.0015 33.7 4.8 78 190-275 45-124 (1016)
257 KOG0361 Chaperonin complex com 32.0 74 0.0016 30.4 4.4 63 155-230 268-335 (543)
258 cd06538 CIDE_N_FSP27 CIDE_N do 31.9 49 0.0011 24.1 2.6 18 10-27 38-55 (79)
259 cd06536 CIDE_N_ICAD CIDE_N dom 31.5 52 0.0011 24.0 2.7 18 10-27 41-58 (80)
260 COG5067 DBF4 Protein kinase es 31.0 37 0.00081 32.2 2.3 46 192-240 122-167 (468)
261 cd06539 CIDE_N_A CIDE_N domain 30.6 59 0.0013 23.6 2.8 19 9-27 38-56 (78)
262 PF13701 DDE_Tnp_1_4: Transpos 29.2 76 0.0016 30.8 4.3 92 9-103 137-242 (448)
263 cd02974 AhpF_NTD_N Alkyl hydro 28.3 61 0.0013 24.2 2.7 36 63-99 6-41 (94)
264 PLN02919 haloacid dehalogenase 28.2 31 0.00068 37.2 1.6 16 13-28 77-92 (1057)
265 PLN02177 glycerol-3-phosphate 27.6 32 0.0007 33.8 1.4 32 63-97 111-142 (497)
266 PF07615 Ykof: YKOF-related Fa 27.4 54 0.0012 23.8 2.2 24 78-101 4-27 (81)
267 PHA03050 glutaredoxin; Provisi 25.2 96 0.0021 23.7 3.4 35 68-102 3-37 (108)
268 PLN02499 glycerol-3-phosphate 24.6 45 0.00098 32.8 1.8 22 79-100 110-132 (498)
269 COG4030 Uncharacterized protei 24.6 94 0.002 27.6 3.5 45 59-103 80-125 (315)
270 KOG1968 Replication factor C, 24.5 72 0.0016 33.7 3.3 75 191-269 172-246 (871)
271 KOG3908 Queuine-tRNA ribosyltr 24.3 1.1E+02 0.0024 28.1 4.0 56 215-281 137-192 (396)
272 PF05085 DUF685: Protein of un 23.6 49 0.0011 29.5 1.6 55 120-186 11-66 (265)
273 COG2102 Predicted ATPases of P 23.4 1.5E+02 0.0034 25.9 4.7 29 198-227 89-117 (223)
274 KOG2733 Uncharacterized membra 23.1 2.3E+02 0.0049 27.0 5.9 44 189-239 27-70 (423)
275 cd04907 ACT_ThrD-I_2 Second of 22.4 89 0.0019 22.6 2.6 21 63-83 10-31 (81)
276 cd06535 CIDE_N_CAD CIDE_N doma 21.7 1E+02 0.0022 22.3 2.7 14 10-23 39-52 (77)
277 KOG3109 Haloacid dehalogenase- 21.0 62 0.0014 28.5 1.7 21 8-28 12-32 (244)
278 KOG3085 Predicted hydrolase (H 20.6 81 0.0017 27.9 2.4 73 65-143 116-197 (237)
279 TIGR01658 EYA-cons_domain eyes 20.2 45 0.00097 29.8 0.7 39 214-262 219-257 (274)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=2.4e-47 Score=368.66 Aligned_cols=272 Identities=30% Similarity=0.445 Sum_probs=242.2
Q ss_pred chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcC---CCCCCcceee--cceeEEEEecccHHHHHHHHhcCce
Q 041003 5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRG---SSSDGDLFKM--ASELFLVKVRSYIRKFLKKASKMYD 79 (282)
Q Consensus 5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~---~~~d~~~~~~--~~~~~~v~~RP~l~~FL~~~~~~ye 79 (282)
..+++++|.||+|||+||+|+...+... +++.++.++.. +..|...|+. ....+|||+||++.+||++++++||
T Consensus 140 ~~~~~~~L~lv~Dld~tllh~~~~~~l~-e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfe 218 (635)
T KOG0323|consen 140 SSLNRKKLHLVLDLDHTLLHTILKSDLS-ETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFE 218 (635)
T ss_pred HHHhhhcceeehhhhhHHHHhhccchhh-hhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhce
Confidence 4566777899999999999999988777 67777777655 4455555553 2467999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceecccccc-ccCCceEEEcCChhhhhhCccCeeeH----
Q 041003 80 IYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVL-RQEWGVVIVDDTEKVWKDHKEHLMLL---- 154 (282)
Q Consensus 80 i~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~-~~~~~vvivDd~~~~~~~~~~N~i~i---- 154 (282)
++|||+|++.||..|+++|||.+.|| ++||++|++......+||..++ ++.++||||||+++||..++.|+|.|
T Consensus 219 mhVyTmg~R~YA~~i~~liDP~~~lF-~dRIisrde~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~ 297 (635)
T KOG0323|consen 219 MHVYTMGTRDYALEIAKLIDPEGKYF-GDRIISRDESPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP 297 (635)
T ss_pred eEEEeccchHHHHHHHHHhCCCCccc-cceEEEecCCCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence 99999999999999999999999999 9999999997766778888887 48899999999999999887799887
Q ss_pred --------------------------------------------------------------------------------
Q 041003 155 -------------------------------------------------------------------------------- 154 (282)
Q Consensus 155 -------------------------------------------------------------------------------- 154 (282)
T Consensus 298 yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 377 (635)
T KOG0323|consen 298 YFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEEN 377 (635)
T ss_pred cccCcccccCCcccccccchhcccccccccccCcccccccccccccccccccCcccccccccccCccccccccccccccc
Confidence
Q ss_pred -------------------HHHHHHHHHHHhHhhcccccCC-------CCCcccccccchhheeecceeEEeeccCCCCc
Q 041003 155 -------------------NGALVNVLRVMKTVHGLFFENP-------VCGDVRCFLGKIQRQILVRCTLFFSRDVDDKE 208 (282)
Q Consensus 155 -------------------D~~L~~l~~~L~~i~~~ff~~~-------~~~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~ 208 (282)
|.+|..++++|+.+|..||..+ ..+|||.+++++|..+++||.++|||..|.+.
T Consensus 378 ~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~ 457 (635)
T KOG0323|consen 378 APEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGS 457 (635)
T ss_pred chhhcccccccccccccccchhHHHHhhhhcccchhhhhccccccccccCCChhhhhhhhhhHHhhccceeecccccCcC
Confidence 4679999999999999999864 57999999999999999999999999999875
Q ss_pred -cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCC-CceecHHHHHHHHHhCCcCCCCCCC
Q 041003 209 -FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHN-KFLVHPQWIYAAYYLWSRQVEKDYF 280 (282)
Q Consensus 209 -~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~g-i~IV~~~WL~~c~~~~~r~~E~~y~ 280 (282)
........++..+||..+++++..+||+|+. +.+|.|+.+|...+ ++||++.|++.|+..|.+++|..|.
T Consensus 458 ~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~--~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~ 529 (635)
T KOG0323|consen 458 TDESADILGVAQQLGAVSAPDVSDKTTHLIAA--NAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEP 529 (635)
T ss_pred CcchhhhhhhhhcccceecccccchhhhHHhh--ccCcceeeccccccceeEechhHHHHHHHHhcchhccccc
Confidence 4556777889999999999999999999999 99999999998865 9999999999999999999999885
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=3.8e-37 Score=255.10 Aligned_cols=147 Identities=38% Similarity=0.590 Sum_probs=126.7
Q ss_pred hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhh--hcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEE
Q 041003 6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMK--QRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLC 83 (282)
Q Consensus 6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~ 83 (282)
|++++|++||||||||||||+..+..+ ....+... +.+..++...|.+++..+++++|||+.+||+++++.||++||
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~ 79 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLS-EWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVY 79 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccc-hhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEE
Confidence 678999999999999999999887554 22221111 112234566777788899999999999999999999999999
Q ss_pred cCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccc-cccCCceEEEcCChhhhhhCccCeeeH
Q 041003 84 TTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLV-LRQEWGVVIVDDTEKVWKDHKEHLMLL 154 (282)
Q Consensus 84 T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l-~~~~~~vvivDd~~~~~~~~~~N~i~i 154 (282)
|++.+.||++|++.|||.+.+| ++|+++|++|.+.+.|||+.+ +++++++|||||++++|..||+|+|+|
T Consensus 80 T~~~~~yA~~vl~~ldp~~~~F-~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i 150 (156)
T TIGR02250 80 TMGTRAYAQAIAKLIDPDGKYF-GDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQI 150 (156)
T ss_pred eCCcHHHHHHHHHHhCcCCCee-ccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEe
Confidence 9999999999999999999999 899999999999999999765 569999999999999999999999987
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=9.4e-38 Score=275.60 Aligned_cols=163 Identities=23% Similarity=0.328 Sum_probs=138.9
Q ss_pred chhcCCCeeEEEeCCCceeeeec-cCccchhhHHhhhhhcCCCCCCcceee--cceeEEEEecccHHHHHHHHhcCceEE
Q 041003 5 MVYRQKKLHLVLDLDQTLPHAVD-IDILASKDRKYLMKQRGSSSDGDLFKM--ASELFLVKVRSYIRKFLKKASKMYDIY 81 (282)
Q Consensus 5 ~l~~~~kl~LVLDLD~TLihs~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~v~~RP~l~~FL~~~~~~yei~ 81 (282)
++-..+|++|||||||||+||+. .+... ..+ ......+ ....+||.+|||+++||..++++||++
T Consensus 83 ~~~~~~kk~lVLDLDeTLvHss~~~~~~~-~~d-----------~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v 150 (262)
T KOG1605|consen 83 RLATVGRKTLVLDLDETLVHSSLNLKPIV-NAD-----------FTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELV 150 (262)
T ss_pred ccccCCCceEEEeCCCcccccccccCCCC-Ccc-----------eeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHH
Confidence 45578899999999999999985 21111 000 0111222 246799999999999999999999999
Q ss_pred EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH----
Q 041003 82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL---- 154 (282)
Q Consensus 82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i---- 154 (282)
+||++.+.||.+|++.|||.+++| .+| ++|++|.. .++|||+.+++++++|+||||+|.+|..||+|+|||
T Consensus 151 ~FTAs~~~Ya~~v~D~LD~~~~i~-~~R-lyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~ 228 (262)
T KOG1605|consen 151 LFTASLEVYADPLLDILDPDRKII-SHR-LYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWF 228 (262)
T ss_pred HHHhhhHHHHHHHHHHccCCCCee-eee-ecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccc
Confidence 999999999999999999988888 666 88999974 899999999999999999999999999999999999
Q ss_pred ----HHHHHHHHHHHhHhhcccccCCCCCcccccccch
Q 041003 155 ----NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKI 188 (282)
Q Consensus 155 ----D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~ 188 (282)
|+||++|+|||+++. ..+|||.+++..
T Consensus 229 ~d~~D~eLL~LlpfLe~L~-------~~~Dvr~~l~~~ 259 (262)
T KOG1605|consen 229 DDPTDTELLKLLPFLEALA-------FVDDVRPILARR 259 (262)
T ss_pred cCCChHHHHHHHHHHHHhc-------ccccHHHHHHHh
Confidence 999999999999999 459999998763
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=1.7e-35 Score=247.11 Aligned_cols=148 Identities=24% Similarity=0.255 Sum_probs=125.2
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHHH
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSY 90 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Y 90 (282)
|++||||||||||||+..+... ..+..+ ...+.....++||++|||+.+||+++++.|||+|||+|++.|
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~y 70 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKV-DADFKV---------PVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEY 70 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCC-CCceEE---------EEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHH
Confidence 6899999999999997754211 000000 000111256899999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCcccccccEEEccCCC---CCceeccccccccCCceEEEcCChhhhhhCccCeeeH--------HHHHH
Q 041003 91 AMMMAKLLNPKCEYHISSRLITREDFK---EKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------NGALV 159 (282)
Q Consensus 91 a~~v~~~ldp~~~~f~~~rv~~r~~~~---~~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i--------D~~L~ 159 (282)
|++|++.|||.+.+| +.+++|++|. +.+.|+|+.++++++++|+|||++..|..+++|+|+| |++|.
T Consensus 71 A~~il~~ldp~~~~f--~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~ 148 (162)
T TIGR02251 71 ADPVLDILDRGGKVI--SRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELL 148 (162)
T ss_pred HHHHHHHHCcCCCEE--eEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHH
Confidence 999999999998888 5668899996 3689999999999999999999999999999999999 99999
Q ss_pred HHHHHHhHhhc
Q 041003 160 NVLRVMKTVHG 170 (282)
Q Consensus 160 ~l~~~L~~i~~ 170 (282)
.|+++|+.|..
T Consensus 149 ~l~~~L~~l~~ 159 (162)
T TIGR02251 149 NLIPFLEGLRF 159 (162)
T ss_pred HHHHHHHHHhc
Confidence 99999999984
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=5e-34 Score=236.95 Aligned_cols=147 Identities=29% Similarity=0.370 Sum_probs=115.4
Q ss_pred eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHHHH
Q 041003 12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYA 91 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya 91 (282)
++|||||||||||+...+... . +..... ....+++++|||+++||++++++||++|||+|++.||
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~-~-------------~~~~~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya 65 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLP-Y-------------DFKIID-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYA 65 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT---------------SEEEET-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHH
T ss_pred CEEEEeCCCcEEEEeecCCCC-c-------------ccceec-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhh
Confidence 589999999999998764321 0 000001 3467899999999999999999999999999999999
Q ss_pred HHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH---------HHHHH
Q 041003 92 MMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL---------NGALV 159 (282)
Q Consensus 92 ~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i---------D~~L~ 159 (282)
.+|++.|||.+.+| .++++|++|.. .+.|||++++++++++|+|||++.+|..+++|+|+| |++|.
T Consensus 66 ~~v~~~ldp~~~~~--~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~ 143 (159)
T PF03031_consen 66 EPVLDALDPNGKLF--SRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELL 143 (159)
T ss_dssp HHHHHHHTTTTSSE--EEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHH
T ss_pred hHHHHhhhhhcccc--ccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHH
Confidence 99999999998888 66789999962 357999999999999999999999999899999999 88999
Q ss_pred HHHHHHhHhhcccccCCCCCccc
Q 041003 160 NVLRVMKTVHGLFFENPVCGDVR 182 (282)
Q Consensus 160 ~l~~~L~~i~~~ff~~~~~~dvr 182 (282)
.++++|++++ ..+|||
T Consensus 144 ~l~~~L~~l~-------~~~Dvr 159 (159)
T PF03031_consen 144 RLLPFLEELA-------KEDDVR 159 (159)
T ss_dssp HHHHHHHHHH-------THS-CH
T ss_pred HHHHHHHHhC-------cccCCC
Confidence 9999999999 458887
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.97 E-value=1.3e-31 Score=228.40 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=121.1
Q ss_pred hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcC
Q 041003 6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTT 85 (282)
Q Consensus 6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~ 85 (282)
....+|++|||||||||||+.+.. .+.++.+|||+++||+.++++|||+|||+
T Consensus 16 ~~~~~kklLVLDLDeTLvh~~~~~---------------------------~~~~~~kRP~l~eFL~~~~~~feIvVwTA 68 (195)
T TIGR02245 16 PPREGKKLLVLDIDYTLFDHRSPA---------------------------ETGEELMRPYLHEFLTSAYEDYDIVIWSA 68 (195)
T ss_pred CCCCCCcEEEEeCCCceEcccccC---------------------------CCceEEeCCCHHHHHHHHHhCCEEEEEec
Confidence 346789999999999999975321 12367899999999999999999999999
Q ss_pred CcHHHHHHHHhhhcCCCc-ccccccEEEccCCC---------C-Cceeccccccc------cCCceEEEcCChhhhhhCc
Q 041003 86 RIRSYAMMMAKLLNPKCE-YHISSRLITREDFK---------E-KGKKSGDLVLR------QEWGVVIVDDTEKVWKDHK 148 (282)
Q Consensus 86 ~~~~Ya~~v~~~ldp~~~-~f~~~rv~~r~~~~---------~-~~~KdL~~l~~------~~~~vvivDd~~~~~~~~~ 148 (282)
+++.||+++++.|++.+. -+ +- .+.+++|. + ..+|||+.+.+ +++++|||||+|.++..||
T Consensus 69 a~~~ya~~~l~~l~~~~~~~~-~i-~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P 146 (195)
T TIGR02245 69 TSMKWIEIKMTELGVLTNPNY-KI-TFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNP 146 (195)
T ss_pred CCHHHHHHHHHHhcccCCccc-eE-EEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCC
Confidence 999999999999976431 12 11 24567763 1 24899998742 7899999999999999999
Q ss_pred cCeeeH------------HHHHHHHHHHHhHhhcccccCCCCCcccccccc
Q 041003 149 EHLMLL------------NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGK 187 (282)
Q Consensus 149 ~N~i~i------------D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~ 187 (282)
+|+|+| |++|..|+++|+.|+ ..+|||++...
T Consensus 147 ~N~i~I~~f~~~~~~~~~D~eL~~L~~yL~~la-------~~~Dvr~~~~~ 190 (195)
T TIGR02245 147 QNGLKIRPFKKAHANRGTDQELLKLTQYLKTIA-------ELEDFSSLDHK 190 (195)
T ss_pred CCccccCCccccCCCCcccHHHHHHHHHHHHHh-------cCcccchhhhc
Confidence 999999 899999999999999 68999998864
No 7
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.93 E-value=1.5e-26 Score=208.56 Aligned_cols=149 Identities=23% Similarity=0.246 Sum_probs=134.9
Q ss_pred cCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCc
Q 041003 8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRI 87 (282)
Q Consensus 8 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~ 87 (282)
.+.++||||||.++|||..|.-. .+|.+++|||++.||..++++|||+|||+..
T Consensus 186 ~Qp~yTLVleledvLVhpdws~~--------------------------tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~ 239 (393)
T KOG2832|consen 186 EQPPYTLVLELEDVLVHPDWSYK--------------------------TGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQ 239 (393)
T ss_pred cCCCceEEEEeeeeEeccchhhh--------------------------cCceeccCchHHHHHHhhcccceEEEEecCC
Confidence 46789999999999999988532 2478999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH--------HH
Q 041003 88 RSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------NG 156 (282)
Q Consensus 88 ~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i--------D~ 156 (282)
..||.++++.|||.|.+ +++ +.|++|.. +.+|||+.|+||+++||+||-++.+...||+|.|++ |+
T Consensus 240 gmt~~pl~d~lDP~g~I--sYk-Lfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn~dDt 316 (393)
T KOG2832|consen 240 GMTVFPLLDALDPKGYI--SYK-LFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGNDDDT 316 (393)
T ss_pred ccchhhhHhhcCCcceE--EEE-EecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCCcccc
Confidence 99999999999999843 677 45999874 789999999999999999999999999999999999 78
Q ss_pred HHHHHHHHHhHhhcccccCCCCCcccccccchhh
Q 041003 157 ALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQR 190 (282)
Q Consensus 157 ~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~r~ 190 (282)
.|.+|++||+.||+. +.+|||++|+.+..
T Consensus 317 ~L~dL~~FL~~ia~~-----~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 317 SLFDLLAFLEYIAQQ-----QVEDVRPVLQSYSQ 345 (393)
T ss_pred hhhhHHHHHHHHHHc-----cHHHHHHHHHHhcc
Confidence 999999999999974 88999999998753
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.90 E-value=2.3e-23 Score=171.27 Aligned_cols=133 Identities=31% Similarity=0.371 Sum_probs=109.2
Q ss_pred CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcc--eeecceeEEEEecccHHHHHHHHhcCceEEEEcCCc
Q 041003 10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDL--FKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRI 87 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~ 87 (282)
||++|||||||||+|++..+..+ .. ....... +......+++++|||+.+||+++.+.|+++|||++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~ 70 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKE--WT--------NRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGL 70 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCC--CC--------ccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCc
Confidence 68999999999999997532111 00 0001111 222356789999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH
Q 041003 88 RSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL 154 (282)
Q Consensus 88 ~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i 154 (282)
+.||+.+++.+++...+| ++++++++|.. .+.|+|++++.+++++|+|||++..|..++.|+|+|
T Consensus 71 ~~~~~~il~~l~~~~~~f--~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 71 RMYADPVLDLLDPKKYFG--YRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPI 138 (148)
T ss_pred HHHHHHHHHHhCcCCCEe--eeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEe
Confidence 999999999999976556 88999999963 578899999999999999999999999999999987
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.84 E-value=2.1e-21 Score=179.75 Aligned_cols=159 Identities=25% Similarity=0.276 Sum_probs=133.9
Q ss_pred CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceee--cceeEEEEecccHHHHHHHHhcCceEEEEcCC
Q 041003 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKM--ASELFLVKVRSYIRKFLKKASKMYDIYLCTTR 86 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~ 86 (282)
..+.+|++|||+||+|+....... . + . ...+.. ....+||.+||++++|+..++++|++++||++
T Consensus 210 ~~~k~L~l~lde~l~~S~~~~~~~-~-d-f----------~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s 276 (390)
T COG5190 210 SPKKTLVLDLDETLVHSSFRYITL-L-D-F----------LVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTAS 276 (390)
T ss_pred CCccccccCCCccceeeccccccc-c-c-h----------hhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecc
Confidence 457899999999999998753222 0 0 0 011111 23679999999999999999999999999999
Q ss_pred cHHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH--------H
Q 041003 87 IRSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------N 155 (282)
Q Consensus 87 ~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i--------D 155 (282)
.+.||++|++.||+.+ .| +++ ++|++|.. .++|||..+++++..++|||++|.+|..+|+|+|+| |
T Consensus 277 ~~~y~~~v~d~l~~~k-~~-~~~-lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d 353 (390)
T COG5190 277 VKRYADPVLDILDSDK-VF-SHR-LFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHD 353 (390)
T ss_pred hhhhcchHHHhccccc-ee-ehh-hhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccc
Confidence 9999999999999999 56 555 66999974 688999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHhHhhcccccCCCCCcccccccch
Q 041003 156 GALVNVLRVMKTVHGLFFENPVCGDVRCFLGKI 188 (282)
Q Consensus 156 ~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~ 188 (282)
.+|..++++|+.|..+ +..||+.++...
T Consensus 354 ~el~~ll~~le~L~~~-----~~~d~~~~l~~~ 381 (390)
T COG5190 354 DELLNLLPFLEDLPDR-----DLKDVSSILQSR 381 (390)
T ss_pred hhhhhhcccccccccc-----cchhhhhhhhhh
Confidence 9999999999999853 688998888653
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.72 E-value=6.1e-18 Score=156.78 Aligned_cols=241 Identities=22% Similarity=0.251 Sum_probs=179.1
Q ss_pred ccchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhh-hcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEE
Q 041003 3 SEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMK-QRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIY 81 (282)
Q Consensus 3 ~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~ 81 (282)
+++|-+++++.||.|+|.|.+||...+..+ .+.+.... ...+..+ ..+......++++.||++..|+...++.||++
T Consensus 18 ~~~l~q~~~~~l~~~~~~~~~h~~~~~~~p-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~ 95 (390)
T COG5190 18 MEALRQDKKLILVVDLDQTIIHTTVDPNDP-NNVNQSLERTLKSVND-RDPVQEKCAYYVKARPKLFPFLTKISPLYELH 95 (390)
T ss_pred HHHhhcCcccccccccccceecccccCCCC-Cchhhhhhccccchhc-cccccccccceeeecccccchhhhhchhccee
Confidence 467788899999999999999999887222 22221100 0011111 11222357899999999999999999999999
Q ss_pred EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccc-cCCceEEEcCChhhh---hhCccCeeeH---
Q 041003 82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLR-QEWGVVIVDDTEKVW---KDHKEHLMLL--- 154 (282)
Q Consensus 82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~-~~~~vvivDd~~~~~---~~~~~N~i~i--- 154 (282)
+||+|++.||..+++++||.|.+| .+|+..|+.......|.++++++ +.+.+++.||.+++| ..+ .|.++.
T Consensus 96 ~~~~~~~~~~~~~~~i~d~~g~~~-~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~-~~~v~~~~~ 173 (390)
T COG5190 96 IYTMGTRAYAERIAKIIDPTGKLF-NDRILSRDESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN-SNFVAKSPF 173 (390)
T ss_pred eEeeccccchhhhhhccccccccc-ccccccccccccchhhhhhhcCccccccccccccccccCCccchh-hhhhccccc
Confidence 999999999999999999999999 99999999988888899999885 899999999999999 211 233332
Q ss_pred --------------------------------------------------------------------------------
Q 041003 155 -------------------------------------------------------------------------------- 154 (282)
Q Consensus 155 -------------------------------------------------------------------------------- 154 (282)
T Consensus 174 ~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~k 253 (390)
T COG5190 174 SKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSK 253 (390)
T ss_pred ccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcC
Confidence
Q ss_pred HHHHHHHHHHHhHhhcccccCC----CCCcccccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccC
Q 041003 155 NGALVNVLRVMKTVHGLFFENP----VCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYN 230 (282)
Q Consensus 155 D~~L~~l~~~L~~i~~~ff~~~----~~~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~ 230 (282)
|.+|..++..|.++|+-+|... -...|..+|...+ +|++|.+-+++..+.+. .++.+ ...| .+
T Consensus 254 Rp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~----~ikDi-s~i~------r~ 320 (390)
T COG5190 254 RPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGV----YIKDI-SKIG------RS 320 (390)
T ss_pred ChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCc----hhhhH-Hhhc------cC
Confidence 6789999999999998666443 2233777777766 99999999998877661 22222 2222 34
Q ss_pred CCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003 231 LSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA 266 (282)
Q Consensus 231 ~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~ 266 (282)
-.-||+|.. ++.+. +..-.+.|+.+.|+.+
T Consensus 321 l~~viiId~--~p~SY----~~~p~~~i~i~~W~~d 350 (390)
T COG5190 321 LDKVIIIDN--SPASY----EFHPENAIPIEKWISD 350 (390)
T ss_pred CCceEEeeC--Chhhh----hhCccceeccCccccc
Confidence 456899988 66554 3333568999999997
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.59 E-value=3.2e-15 Score=105.02 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=54.2
Q ss_pred eeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHH
Q 041003 196 CTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQW 263 (282)
Q Consensus 196 ~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~W 263 (282)
|+|+|||+.+.+ +..++++++.+||++..+++.++||||+. +..++|++.|.++|++||+|+|
T Consensus 1 ~~i~~sg~~~~~---~~~l~~~i~~~Gg~~~~~lt~~~THLI~~--~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKE---RSQLRKLIEALGGKYSKDLTKKTTHLICS--SPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTT---CCHHHHHHHCTT-EEESSSSTT-SEEEEE--S--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHH---HHHHHHHHHHCCCEEeccccCCceEEEEe--CCCcHHHHHHHHCCCcEECCCC
Confidence 689999987654 78999999999999999999999999998 8999999999999999999999
No 12
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.55 E-value=1.4e-14 Score=105.20 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=67.0
Q ss_pred hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHH
Q 041003 189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAY 268 (282)
Q Consensus 189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~ 268 (282)
+..+|+||.+++++. +. .++..+.++++.+||++...+++.+||+|+......+.|+..|...|++||+++||.+|+
T Consensus 2 ~~~~F~g~~f~i~~~-~~--~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 2 KPKIFEGCTFCISGF-DS--DEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp STTTTTTEEEEESST-SS--SHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCCEEEEEccC-CC--CCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 467899999999655 33 358889999999999999999999999999932248899999999999999999999996
No 13
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.41 E-value=1.2e-12 Score=94.06 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=64.0
Q ss_pred eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCC-CccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNL-SVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY 269 (282)
Q Consensus 191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~-~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~ 269 (282)
.+|+|++++|+|..+. .....+++++..+||++...+++ ++||+|+.+......++..|...+++||+++|+.+|+.
T Consensus 1 ~~f~g~~~~~~g~~~~--~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 78 (80)
T smart00292 1 KLFKGKVFVITGKFDK--NERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLK 78 (80)
T ss_pred CccCCeEEEEeCCCCC--ccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHH
Confidence 3799999999993222 45889999999999999999998 99999999422223335677788999999999999987
Q ss_pred hC
Q 041003 270 LW 271 (282)
Q Consensus 270 ~~ 271 (282)
.+
T Consensus 79 ~~ 80 (80)
T smart00292 79 AG 80 (80)
T ss_pred Cc
Confidence 53
No 14
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.38 E-value=2.6e-12 Score=90.30 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=60.9
Q ss_pred ceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHH-HHHHHHCCCceecHHHHHHHHH
Q 041003 195 RCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKG-HRLAEQHNKFLVHPQWIYAAYY 269 (282)
Q Consensus 195 G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K-~~~A~~~gi~IV~~~WL~~c~~ 269 (282)
||.++|+|..+. .++..+.++++.+||++...+++.+||+|+. +....+ +..|...|++||+++||.+|++
T Consensus 1 ~~~~~i~g~~~~--~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~--~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPS--EERDELKELIEKLGGKVTSSVSKKTTHVIVG--SDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCC--cCHHHHHHHHHHcCCEEeccccCCceEEEEC--CCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 789999998743 3588999999999999999999999999999 444333 7778889999999999999973
No 15
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.35 E-value=6.5e-13 Score=120.30 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=80.2
Q ss_pred eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHHh
Q 041003 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYL 270 (282)
Q Consensus 191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~ 270 (282)
++|.|+++++||+.. |.++.|+..|..+||++..+++..+|||||+ .++|.||.+...+|-.||+-+||++|.+.
T Consensus 316 klL~GVV~VlSGfqN---P~Rs~LRskAl~LGAkY~pDW~~gsThLICA--F~NTPKy~QV~g~Gg~IV~keWI~~Cy~~ 390 (508)
T KOG3226|consen 316 KLLEGVVFVLSGFQN---PERSTLRSKALTLGAKYQPDWNAGSTHLICA--FPNTPKYRQVEGNGGTIVSKEWITECYAQ 390 (508)
T ss_pred HhhhceEEEEecccC---chHHHHHHHHHhhcccccCCcCCCceeEEEe--cCCCcchhhcccCCceEeeHHHHHHHHHH
Confidence 699999999999854 5699999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCcCCCCCCC
Q 041003 271 WSRQVEKDYF 280 (282)
Q Consensus 271 ~~r~~E~~y~ 280 (282)
++++|-..|.
T Consensus 391 kk~lp~rrYl 400 (508)
T KOG3226|consen 391 KKLLPIRRYL 400 (508)
T ss_pred HhhccHHHHH
Confidence 9999988775
No 16
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.93 E-value=2.6e-09 Score=108.07 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=78.3
Q ss_pred hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCC---CCcHHHHHHHHCCCceecHHHHH
Q 041003 189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR---LGIKGHRLAEQHNKFLVHPQWIY 265 (282)
Q Consensus 189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~---~~t~K~~~A~~~gi~IV~~~WL~ 265 (282)
...+|.|++|+|||.++. .+..+..+++.+||++++++ +++||+|+++.+ .++.|+..|.+.||+||+.+||.
T Consensus 186 ~~kpL~G~~fviTGtl~~---sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~ 261 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR---THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLI 261 (815)
T ss_pred cCCCcCCcEEEEeCCCCC---CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHH
Confidence 456899999999999865 37899999999999999999 778899998533 34689999999999999999999
Q ss_pred HHHHhCCcCCCCCCCC
Q 041003 266 AAYYLWSRQVEKDYFP 281 (282)
Q Consensus 266 ~c~~~~~r~~E~~y~~ 281 (282)
+|+...+.++|..|..
T Consensus 262 d~i~~~k~~~~~~y~l 277 (815)
T PLN03122 262 DSIEKQEAQPLEAYDV 277 (815)
T ss_pred HHHhcCCcccchhhhh
Confidence 9999999999998864
No 17
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.84 E-value=5.5e-09 Score=107.77 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=78.0
Q ss_pred hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCC-CCCcHHHHHHHHCCCceecHHHHHHH
Q 041003 189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSS-RLGIKGHRLAEQHNKFLVHPQWIYAA 267 (282)
Q Consensus 189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~-~~~t~K~~~A~~~gi~IV~~~WL~~c 267 (282)
...+|.|++|+++|.++.. ...+.+.++.+||++++.+++.+||||+..+ +..+.|+.+|.+.||+||+.+||.+|
T Consensus 390 ~~~~l~~~~i~i~G~~~~~---~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds 466 (981)
T PLN03123 390 ESEFLGDLKVSIVGASKEK---VTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDC 466 (981)
T ss_pred cCCCcCCeEEEEecCCCCc---HHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHH
Confidence 4578999999999988653 5778899999999999999999999998842 24578899999999999999999999
Q ss_pred HHhCCcCCCCCCC
Q 041003 268 YYLWSRQVEKDYF 280 (282)
Q Consensus 268 ~~~~~r~~E~~y~ 280 (282)
....+++|+..|.
T Consensus 467 ~~~~~~~p~~~y~ 479 (981)
T PLN03123 467 FKKKKKLPFDKYK 479 (981)
T ss_pred HhccccCcchhhh
Confidence 9999999988773
No 18
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.57 E-value=1.4e-07 Score=74.70 Aligned_cols=124 Identities=19% Similarity=0.169 Sum_probs=86.3
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceee-cceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKM-ASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY 90 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y 90 (282)
.+|+|+|+||+.....+.+.||.... ....+ ++.+.-+.++|++.+||+++.. -|-+..+|+....-
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rV-----------s~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k 70 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRV-----------SSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK 70 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceec-----------CccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH
Confidence 47999999999987776555443321 11112 3456789999999999999985 58889999999999
Q ss_pred HHHHHhhhcCCCcccccccEEEccCCCC--Cceecccccc--c----cCCceEEEcCCh----hhhhhCccCe
Q 041003 91 AMMMAKLLNPKCEYHISSRLITREDFKE--KGKKSGDLVL--R----QEWGVVIVDDTE----KVWKDHKEHL 151 (282)
Q Consensus 91 a~~v~~~ldp~~~~f~~~rv~~r~~~~~--~~~KdL~~l~--~----~~~~vvivDd~~----~~~~~~~~N~ 151 (282)
|-+++..||-.. || +-++...+..+ +..+=|..+. + .++++|.+||+. +.|. +.+|+
T Consensus 71 A~~aLral~~~~-yF--hy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe-~~G~V 139 (164)
T COG4996 71 AIKALRALDLLQ-YF--HYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWE-YLGNV 139 (164)
T ss_pred HHHHHHHhchhh-hE--EEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHH-hcCCe
Confidence 999999999887 67 43343444322 1222222232 2 479999999998 6665 34544
No 19
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.40 E-value=1.3e-06 Score=73.61 Aligned_cols=133 Identities=13% Similarity=0.041 Sum_probs=83.7
Q ss_pred eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCC-cHH
Q 041003 12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTR-IRS 89 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~-~~~ 89 (282)
..+|+|||.||+.....+-..++.... +.. .-.-......-+.++||+.++|+.+. +.+.+.|-|++ .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~ 74 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGPFKPV-----KQN---NSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE 74 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCCceec-----cCC---CCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH
Confidence 357999999999988765433221100 000 00011123346788999999999996 56999999988 999
Q ss_pred HHHHHHhhhcCC--C------cccccccEEEccCCCC-Cc----eeccccc---cccCCceEEEcCChhhhhhCccCeee
Q 041003 90 YAMMMAKLLNPK--C------EYHISSRLITREDFKE-KG----KKSGDLV---LRQEWGVVIVDDTEKVWKDHKEHLML 153 (282)
Q Consensus 90 Ya~~v~~~ldp~--~------~~f~~~rv~~r~~~~~-~~----~KdL~~l---~~~~~~vvivDd~~~~~~~~~~N~i~ 153 (282)
++..+++.++-. + .+| +.+++-++... .. .+.+... +-+.+++++|||++.-...-..+++.
T Consensus 75 ~~~~~L~~~~l~~~~~~~~~~~~F--d~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~ 152 (174)
T TIGR01685 75 WAYEILGTFEITYAGKTVPMHSLF--DDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVT 152 (174)
T ss_pred HHHHHHHhCCcCCCCCcccHHHhc--eeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCE
Confidence 999999998754 2 467 44555444321 11 1122222 24679999999999655433455554
Q ss_pred H
Q 041003 154 L 154 (282)
Q Consensus 154 i 154 (282)
+
T Consensus 153 ~ 153 (174)
T TIGR01685 153 S 153 (174)
T ss_pred E
Confidence 4
No 20
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.32 E-value=5.6e-07 Score=71.99 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=70.3
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCC-cHHH
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTR-IRSY 90 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~-~~~Y 90 (282)
.+|+|||+||+......... . ...+ .. +..||+.++|+.+. +.+.++|.|++ .+.|
T Consensus 2 li~~DlD~Tl~~~~~~~~~~-~----------~~~~--------~~---~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~ 59 (128)
T TIGR01681 2 VIVFDLDNTLWTGENIVVGE-D----------PIID--------LE---VTIKEIRDKLQTLKKNGFLLALASYNDDPHV 59 (128)
T ss_pred EEEEeCCCCCCCCCcccccC-C----------cchh--------hH---HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHH
Confidence 57999999999774311000 0 0000 01 57899999999996 46999999999 9999
Q ss_pred HHHHHhhhcC------CCcccccccEEEccCCCC--Cceecccccc--ccCCceEEEcCChhh
Q 041003 91 AMMMAKLLNP------KCEYHISSRLITREDFKE--KGKKSGDLVL--RQEWGVVIVDDTEKV 143 (282)
Q Consensus 91 a~~v~~~ldp------~~~~f~~~rv~~r~~~~~--~~~KdL~~l~--~~~~~vvivDd~~~~ 143 (282)
+..+++...+ -..+| +.+++.++... .+.+-+.+++ -.++++++|||++..
T Consensus 60 ~~~~l~~~~~~~~i~~l~~~f--~~~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n 120 (128)
T TIGR01681 60 AYELLKIFEDFGIIFPLAEYF--DPLTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDDRPDN 120 (128)
T ss_pred HHHHHHhccccccchhhHhhh--hhhhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECCCHhH
Confidence 9999988763 12234 22232222211 2344455566 688999999999854
No 21
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.25 E-value=2.8e-06 Score=85.19 Aligned_cols=72 Identities=8% Similarity=-0.062 Sum_probs=64.4
Q ss_pred eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA 266 (282)
Q Consensus 191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~ 266 (282)
.+|.|.++||||.++.. .+..+.++++.+||+++.+++++++.||++ +..+.|..+|.+.||+|++.+.+.+
T Consensus 592 ~~l~gktfV~TG~l~~~--~R~e~~~lie~~Ggkv~ssVSkktd~LV~G--~~aGsKl~KA~~LGI~Ii~e~~f~~ 663 (669)
T PRK14350 592 SFLFGKKFCITGSFNGY--SRSVLIDKLTKKGAIFNTCVTKYLDFLLVG--EKAGLKLKKANNLGIKIMSLFDIKS 663 (669)
T ss_pred CccCCcEEEEecccCCC--CHHHHHHHHHHcCCEEeccccCCCcEEEEC--CCCCchHHHHHHcCCEEecHHHHHH
Confidence 46999999999988764 489999999999999999999999999999 5455799999999999999888765
No 22
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=98.20 E-value=3.8e-06 Score=77.35 Aligned_cols=72 Identities=15% Similarity=0.034 Sum_probs=61.1
Q ss_pred eecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003 192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA 266 (282)
Q Consensus 192 vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~ 266 (282)
.|.|.+|+|||.+.. .+.+++++++.+||+++++++++++.||++.....+.|.++|.+.||+|++.+=+.+
T Consensus 232 l~~g~~~v~TG~l~~---~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ 303 (313)
T PRK06063 232 LVQGMRVALSAEVSR---THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLE 303 (313)
T ss_pred ccCCCEEEEecCCCC---CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHH
Confidence 378999999999863 489999999999999999999999999999422234899999999999999764443
No 23
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.19 E-value=2.5e-06 Score=86.35 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=85.7
Q ss_pred CcccccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCce
Q 041003 179 GDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFL 258 (282)
Q Consensus 179 ~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~I 258 (282)
.+-++....++...|.||.||.+|+.. .++..+..++..+||+....++..++|++..+ ...++||++|.++++++
T Consensus 90 ~~~~~l~~~~~~p~~~~~~Vc~tgl~~---~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~-~~~~~kYe~al~wn~~v 165 (811)
T KOG1929|consen 90 RLLDPLRDTMKCPGFFGLKVCLTGLSG---DEKSEIKILVPKHGGTLHRSLSSDVNSLKILP-EVKTEKYEQALKWNIPV 165 (811)
T ss_pred ccCccchhhhcCCcccceEEEecccch---HHHHHHHHHhhhcccEEehhhhhhhheeeecc-ccchHHHHHHHhhCCcc
Confidence 334455666788899999999999833 35899999999999999999999999998884 34569999999999999
Q ss_pred ecHHHHHHHHHhCCcCCCCCCCC
Q 041003 259 VHPQWIYAAYYLWSRQVEKDYFP 281 (282)
Q Consensus 259 V~~~WL~~c~~~~~r~~E~~y~~ 281 (282)
|+.+|+++|+......+++.|..
T Consensus 166 ~~~~w~~~s~~~~~~~~~~~~e~ 188 (811)
T KOG1929|consen 166 VSDDWLFDSIEKTAVLETKPYEG 188 (811)
T ss_pred ccHHHHhhhhccccccccccccc
Confidence 99999999999999999998864
No 24
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.15 E-value=1.7e-06 Score=87.53 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=84.6
Q ss_pred CcccccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCce
Q 041003 179 GDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFL 258 (282)
Q Consensus 179 ~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~I 258 (282)
...|++..+.=.++|.||+|++++. + .+++..+...+..+||.....+....||+++. +....|+..|.++++++
T Consensus 480 ~~~~~vp~~~l~~~~e~~~~~~s~~-~--~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~--~~k~s~~~~~~kw~ip~ 554 (811)
T KOG1929|consen 480 DNLRPVPAAALSQPFENLTISNSQS-A--EAEREKLNNLANDLGASNVKTFTRKSTTLLTT--SAKGSKYEIAGKWSIPI 554 (811)
T ss_pred hhcCcchhhcccccccCceEEeeec-h--HHHHHHHhHhhhhccccccceeeecccEEecc--ccccchhhhccccCCCc
Confidence 3455666666678999999999875 1 25678889999999999999999888999999 77888999999999999
Q ss_pred ecHHHHHHHHHhCCcCCCCCCCC
Q 041003 259 VHPQWIYAAYYLWSRQVEKDYFP 281 (282)
Q Consensus 259 V~~~WL~~c~~~~~r~~E~~y~~ 281 (282)
|+++||.+|.++.+..+.+-|..
T Consensus 555 vT~~wL~e~~rq~~~~~~e~~l~ 577 (811)
T KOG1929|consen 555 VTPDWLYECVRQNKGERNEGFLN 577 (811)
T ss_pred cChhHHHhhccccCcccceeecc
Confidence 99999999999999999888864
No 25
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.12 E-value=8.4e-06 Score=73.67 Aligned_cols=78 Identities=19% Similarity=0.146 Sum_probs=61.8
Q ss_pred cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEec-ccHHHHHHHHhcC-ceEE
Q 041003 4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVR-SYIRKFLKKASKM-YDIY 81 (282)
Q Consensus 4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~R-P~l~~FL~~~~~~-yei~ 81 (282)
+++.-..+..+|+||||||+-... -+..| ||+.+.|+++.+. +.++
T Consensus 119 ~~~~~~~~kvIvFDLDgTLi~~~~--------------------------------~v~irdPgV~EaL~~LkekGikLa 166 (301)
T TIGR01684 119 PSKVFEPPHVVVFDLDSTLITDEE--------------------------------PVRIRDPRIYDSLTELKKRGCILV 166 (301)
T ss_pred cccccccceEEEEecCCCCcCCCC--------------------------------ccccCCHHHHHHHHHHHHCCCEEE
Confidence 445556677899999999998743 13478 9999999999876 8999
Q ss_pred EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCC
Q 041003 82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF 116 (282)
Q Consensus 82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~ 116 (282)
|+|++.++++..+++.++-.+ +| +.+++.++.
T Consensus 167 IaTS~~Re~v~~~L~~lGLd~-YF--dvIIs~Gdv 198 (301)
T TIGR01684 167 LWSYGDRDHVVESMRKVKLDR-YF--DIIISGGHK 198 (301)
T ss_pred EEECCCHHHHHHHHHHcCCCc-cc--CEEEECCcc
Confidence 999999999999999988775 56 455554443
No 26
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.11 E-value=1.2e-05 Score=72.71 Aligned_cols=78 Identities=19% Similarity=0.188 Sum_probs=62.2
Q ss_pred cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEec-ccHHHHHHHHhcC-ceEE
Q 041003 4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVR-SYIRKFLKKASKM-YDIY 81 (282)
Q Consensus 4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~R-P~l~~FL~~~~~~-yei~ 81 (282)
+++..+.+..+|+||||||+.... -+.+| |++.+.|+++.+. +.+.
T Consensus 121 ~~~~~~~~~~i~~D~D~TL~~~~~--------------------------------~v~irdp~V~EtL~eLkekGikLa 168 (303)
T PHA03398 121 ESLVWEIPHVIVFDLDSTLITDEE--------------------------------PVRIRDPFVYDSLDELKERGCVLV 168 (303)
T ss_pred ceeEeeeccEEEEecCCCccCCCC--------------------------------ccccCChhHHHHHHHHHHCCCEEE
Confidence 455667778999999999998743 13478 9999999999874 8999
Q ss_pred EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCC
Q 041003 82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF 116 (282)
Q Consensus 82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~ 116 (282)
|+|+|.++++..+++.+.-.+ +| +-+++.++.
T Consensus 169 IvTNg~Re~v~~~Le~lgL~~-yF--DvII~~g~i 200 (303)
T PHA03398 169 LWSYGNREHVVHSLKETKLEG-YF--DIIICGGRK 200 (303)
T ss_pred EEcCCChHHHHHHHHHcCCCc-cc--cEEEECCCc
Confidence 999999999999999988764 56 445555544
No 27
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=98.10 E-value=9.2e-06 Score=80.22 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=65.2
Q ss_pred eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA 266 (282)
Q Consensus 191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~ 266 (282)
.+|.|.+++|||.++.- ++..++.+++.+||+|+.+++++++-||++ +..+.|...|.+.||+|.+-+++.+
T Consensus 593 ~~l~gkt~V~TGtL~~~--sR~eak~~le~lGakv~~SVSkktD~vvaG--~~aGSKl~kA~eLgv~i~~E~~~~~ 664 (667)
T COG0272 593 SPLAGKTFVLTGTLEGM--SRDEAKALLEALGAKVSGSVSKKTDYVVAG--ENAGSKLAKAQELGVKIIDEEEFLA 664 (667)
T ss_pred cccCCCEEEEeccCCCC--CHHHHHHHHHHcCCEEeceecccccEEEEc--CCCChHHHHHHHcCCeEecHHHHHH
Confidence 57999999999998854 589999999999999999999999999999 6666699999999999999988765
No 28
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.08 E-value=6.6e-06 Score=64.25 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=50.5
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHH
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYA 91 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya 91 (282)
++|+|+|+||+.+...... ......+|++.++|+.+.+. +.++|.|++.+.++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~ 54 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE--------------------------IEELELYPGVKEALKELKEKGIKLALATNKSRREV 54 (139)
T ss_pred CeEEccCCceEccCccccc--------------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHH
Confidence 4799999999888643110 12356899999999999876 99999999999999
Q ss_pred HHHHhhhcC
Q 041003 92 MMMAKLLNP 100 (282)
Q Consensus 92 ~~v~~~ldp 100 (282)
..+++.+.-
T Consensus 55 ~~~~~~~~~ 63 (139)
T cd01427 55 LELLEELGL 63 (139)
T ss_pred HHHHHHcCC
Confidence 999988754
No 29
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.04 E-value=1.8e-05 Score=79.79 Aligned_cols=76 Identities=12% Similarity=-0.016 Sum_probs=66.3
Q ss_pred eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY 269 (282)
Q Consensus 191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~ 269 (282)
..|.|.++||||.+... .+..+..+++.+||+++++++++++.||++. .+|..|...|.+.||+|++.+-+.+=+.
T Consensus 608 ~~l~g~~~v~TG~l~~~--~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~-~~g~sKl~kA~~lgi~ii~E~~f~~ll~ 683 (689)
T PRK14351 608 DALDGLTFVFTGSLSGY--TRSEAQELVEAHGGNATGSVSGNTDYLVVGE-NPGQSKRDDAEANDVPTLDEEEFEELLA 683 (689)
T ss_pred CCCCCcEEEEccCCCCC--CHHHHHHHHHHcCCEEcCCcCCCccEEEEcC-CCChhHHHHHHHCCCeEecHHHHHHHHH
Confidence 46999999999998753 4899999999999999999999999999994 3555899999999999999888776554
No 30
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=98.01 E-value=1.8e-05 Score=72.74 Aligned_cols=70 Identities=9% Similarity=0.001 Sum_probs=59.7
Q ss_pred eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCC-------CCCcHHHHHHHHC-----CCce
Q 041003 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSS-------RLGIKGHRLAEQH-----NKFL 258 (282)
Q Consensus 191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~-------~~~t~K~~~A~~~-----gi~I 258 (282)
.+|.|.++||||.+... .+..+..+++.+||++++++++++|.||++.. ...+.|..+|.+. ||+|
T Consensus 219 ~~l~g~~~vfTG~l~~~--~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~i 296 (309)
T PRK06195 219 TAFKEEVVVFTGGLASM--TRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKF 296 (309)
T ss_pred ccccCCEEEEccccCCC--CHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEE
Confidence 36999999999998654 48999999999999999999999999999832 1346899999887 8999
Q ss_pred ecHH
Q 041003 259 VHPQ 262 (282)
Q Consensus 259 V~~~ 262 (282)
++-+
T Consensus 297 i~E~ 300 (309)
T PRK06195 297 LNEE 300 (309)
T ss_pred ecHH
Confidence 9865
No 31
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.99 E-value=2.6e-05 Score=78.51 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=65.2
Q ss_pred eecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003 192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY 269 (282)
Q Consensus 192 vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~ 269 (282)
.|.|.++||||.++.. .+..+..+++.+||+++++++++++.||++ ...+.|...|.+.||+|++.+-+.+.+.
T Consensus 590 ~~~g~~~v~TG~l~~~--~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G--~~~gsK~~kA~~lgI~ii~E~~f~~~l~ 663 (665)
T PRK07956 590 DLAGKTVVLTGTLEQL--SRDEAKEKLEALGAKVSGSVSKKTDLVVAG--EAAGSKLAKAQELGIEVLDEEEFLRLLG 663 (665)
T ss_pred CccccEEEEeCCCCCC--CHHHHHHHHHHcCCEEeCcccCCCCEEEEC--CCCChHHHHHHHcCCeEEcHHHHHHHHh
Confidence 3899999999998653 489999999999999999999999999999 4455899999999999999888777654
No 32
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.94 E-value=2.1e-05 Score=79.04 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=60.2
Q ss_pred eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHH
Q 041003 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQ 262 (282)
Q Consensus 191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~ 262 (282)
.+|.|.++||||.++.. ++..+..+++.+||+++++++++++.||++ ...+.|...|.+.||+|++.+
T Consensus 583 ~~l~gk~~v~TG~l~~~--~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G--~~~gsKl~kA~~lgi~ii~E~ 650 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQM--SRDEAKELLENLGGKVASSVSKKTDYVIAG--EKAGSKLAKAQELGIPIINEE 650 (652)
T ss_pred CCccCcEEEEeccCCCC--CHHHHHHHHHHcCCEEeCCcCCCccEEEEC--CCCChHHHHHHHcCCcEechh
Confidence 46999999999998753 489999999999999999999999999999 444569999999999999865
No 33
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.90 E-value=1.5e-05 Score=71.48 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=63.9
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
+...||+.++|+.+.+ .+.++|-|++++.++..+++.++-.. +| +.+++.+++.. .+.+-+++++-+.++
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F--d~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~ 184 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FF--SVVLAAEDVYRGKPDPEMFMYAAERLGFIPER 184 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hC--cEEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence 5678999999999975 59999999999999999999986443 67 66787777642 234455566667899
Q ss_pred eEEEcCChhhh
Q 041003 134 VVIVDDTEKVW 144 (282)
Q Consensus 134 vvivDd~~~~~ 144 (282)
+++|+|+..-.
T Consensus 185 ~l~IgDs~~Di 195 (260)
T PLN03243 185 CIVFGNSNSSV 195 (260)
T ss_pred eEEEcCCHHHH
Confidence 99999997433
No 34
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.90 E-value=2.3e-05 Score=69.50 Aligned_cols=80 Identities=14% Similarity=-0.074 Sum_probs=61.8
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccccc-cCC
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLR-QEW 132 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~-~~~ 132 (282)
+...||+.++|+.+.+ .+.+.|-|++.+.++..+++.++-.+.+| +.+++.++... .+.+-+++++- +.+
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~--d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~ 175 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRP--DYNVTTDDVPAGRPAPWMALKNAIELGVYDVA 175 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCC--ceEEccccCCCCCCCHHHHHHHHHHcCCCCch
Confidence 5788999999999965 59999999999999999999987665334 67777776532 23444555664 478
Q ss_pred ceEEEcCChh
Q 041003 133 GVVIVDDTEK 142 (282)
Q Consensus 133 ~vvivDd~~~ 142 (282)
.+++|.|++.
T Consensus 176 ~~l~IGDs~~ 185 (253)
T TIGR01422 176 ACVKVGDTVP 185 (253)
T ss_pred heEEECCcHH
Confidence 8999999973
No 35
>COG5275 BRCT domain type II [General function prediction only]
Probab=97.83 E-value=4.9e-05 Score=65.01 Aligned_cols=78 Identities=14% Similarity=0.009 Sum_probs=66.7
Q ss_pred cchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHH
Q 041003 186 GKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIY 265 (282)
Q Consensus 186 ~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~ 265 (282)
.+...+.|.|.+|+|+|..+.- ++.....++..+||+|+...+.++|.||++. +.|..|+..+++++|+.+.-+=+.
T Consensus 150 peg~~~cL~G~~fVfTG~l~Tl--sR~~a~~lvk~yGgrvT~~pSskTtflvlGd-naGP~K~ekiKqlkIkaidEegf~ 226 (276)
T COG5275 150 PEGERECLKGKVFVFTGDLKTL--SRDDAKTLVKVYGGRVTAVPSSKTTFLVLGD-NAGPSKMEKIKQLKIKAIDEEGFD 226 (276)
T ss_pred CCCCcccccccEEEEecccccc--cchhHHHHHHHhCCeeecccccceeEEEecC-CCChHHHHHHHHhCCccccHHHHH
Confidence 3446789999999999998742 4788899999999999999999999999984 688999999999999998876554
Q ss_pred H
Q 041003 266 A 266 (282)
Q Consensus 266 ~ 266 (282)
.
T Consensus 227 ~ 227 (276)
T COG5275 227 S 227 (276)
T ss_pred H
Confidence 4
No 36
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.83 E-value=2.3e-05 Score=72.25 Aligned_cols=106 Identities=17% Similarity=0.027 Sum_probs=67.9
Q ss_pred CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcH
Q 041003 10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIR 88 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~ 88 (282)
.+++||+|||+||+...-..... . -+. .....|++.++|+.+.+ -+.+.|.|+..+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~--------------~---~i~------~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~ 58 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGI--------------D---NLN------LSPLHKTLQEKIKTLKKQGFLLALASKNDE 58 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCc--------------c---ccc------cCccHHHHHHHHHHHHhCCCEEEEEcCCCH
Confidence 36789999999999765422111 0 001 11247999999999975 589999999999
Q ss_pred HHHHHHHhh----hcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcCCh
Q 041003 89 SYAMMMAKL----LNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 89 ~Ya~~v~~~----ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd~~ 141 (282)
..|..+++. +.... +| ..+...-.... ...+-++.++-+++.+|+|||++
T Consensus 59 ~~a~~~l~~~~~~~~~~~-~f--~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~ 113 (320)
T TIGR01686 59 DDAKKVFERRKDFILQAE-DF--DARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNP 113 (320)
T ss_pred HHHHHHHHhCccccCcHH-He--eEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCH
Confidence 999999987 43322 34 21111111111 12223344556789999999998
No 37
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.82 E-value=2.2e-05 Score=65.79 Aligned_cols=123 Identities=17% Similarity=0.040 Sum_probs=65.8
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEc-CCcH
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCT-TRIR 88 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T-~~~~ 88 (282)
+..+|+|||.||+........++|...... +. --.+..+.-+++-|++.+.|+++.+ ..+|.+-| +..+
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~-------~~--~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P 73 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISN-------GN--VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP 73 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TT-------S----EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCC-------CC--EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh
Confidence 457899999999998887665544321110 00 0112455678999999999999975 69999999 5789
Q ss_pred HHHHHHHhhhcCC---------CcccccccEEEccCCCCCceecccc-ccccCCceEEEcCChhhh
Q 041003 89 SYAMMMAKLLNPK---------CEYHISSRLITREDFKEKGKKSGDL-VLRQEWGVVIVDDTEKVW 144 (282)
Q Consensus 89 ~Ya~~v~~~ldp~---------~~~f~~~rv~~r~~~~~~~~KdL~~-l~~~~~~vvivDd~~~~~ 144 (282)
+.|.++++.|+-. ..+| .+.=++.. +.....+.|.+ .+-+.+.++++||.....
T Consensus 74 ~~A~~~L~~l~i~~~~~~~~~~~~~F-~~~eI~~g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 74 DWARELLKLLEIDDADGDGVPLIEYF-DYLEIYPG-SKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp HHHHHHHHHTT-C----------CCE-CEEEESSS--HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred HHHHHHHHhcCCCccccccccchhhc-chhheecC-chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 9999999998765 1244 22212221 11122333332 223678899999987543
No 38
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.81 E-value=6.5e-06 Score=80.69 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=63.4
Q ss_pred heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003 190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY 269 (282)
Q Consensus 190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~ 269 (282)
...|+|++.||+|..+.. ..+.+++..|||.+..+.+.++||+|+. ..+.+|+..|.-. .+++.|.|+.+||.
T Consensus 116 ~~~m~~vvlcfTg~rkk~----e~lv~lvh~mgg~irkd~nsktthli~n--~s~gek~~~a~t~-~~~~rp~wv~~aw~ 188 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERKKK----EELVDLVHYMGGSIRKDTNSKTTHLIAN--KVEGEKQSIALVG-VPTMRPDWVTEAWK 188 (850)
T ss_pred chhhcCceeeeeccchhh----HHHHHHHHHhcceeEeeeccCceEEEee--cccceEEEEEeec-cceechHhhhhhhc
Confidence 457899999999997764 3889999999999999999999999999 7777777666544 99999999999954
No 39
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=97.79 E-value=1.6e-05 Score=75.71 Aligned_cols=80 Identities=18% Similarity=0.333 Sum_probs=65.3
Q ss_pred heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEeccc----------CCCccEEEEcCCCCC-cHHHHHHHHCCCce
Q 041003 190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVY----------NLSVAQVVSVSSRLG-IKGHRLAEQHNKFL 258 (282)
Q Consensus 190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~----------~~~vTHlV~~~~~~~-t~K~~~A~~~gi~I 258 (282)
+.+|+|++++++.-+| +..|.=++.++||.|+.+- +..+||=|+. +++ +.++ .|..-
T Consensus 325 kslF~glkFfl~reVP-----resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvD--rP~~~~~v-----~gR~Y 392 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVP-----RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVD--RPGQQTSV-----IGRTY 392 (570)
T ss_pred HHHhhcceeeeeccCc-----hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeec--ccCcccee-----eeeee
Confidence 3689999999998877 4578889999999998872 2468999998 554 2222 27889
Q ss_pred ecHHHHHHHHHhCCcCCCCCCCC
Q 041003 259 VHPQWIYAAYYLWSRQVEKDYFP 281 (282)
Q Consensus 259 V~~~WL~~c~~~~~r~~E~~y~~ 281 (282)
|.|+||.+|+.++..+|-+.|.|
T Consensus 393 vQPQWvfDsvNar~llpt~~Y~~ 415 (570)
T KOG2481|consen 393 VQPQWVFDSVNARLLLPTEKYFP 415 (570)
T ss_pred ecchhhhhhccchhhccHhhhCC
Confidence 99999999999999999988876
No 40
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.77 E-value=0.00011 Score=73.46 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=66.7
Q ss_pred eeecceeEE-eeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003 191 QILVRCTLF-FSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY 269 (282)
Q Consensus 191 ~vl~G~~i~-fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~ 269 (282)
++|.|+.+| ++|.. .. +++..+.+++..+||.++..+.++.||.|+......+.+..+|.+.++-||+|.||.+|+.
T Consensus 632 ~if~gl~f~Vlsgt~-~~-~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc~ 709 (881)
T KOG0966|consen 632 NIFDGLEFCVLSGTS-ET-HTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCCK 709 (881)
T ss_pred hhhcCeeEEEecCCc-cc-ccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHHh
Confidence 689999975 45542 22 3467899999999999999999999999974325566667778888999999999999998
Q ss_pred hCCcCCC
Q 041003 270 LWSRQVE 276 (282)
Q Consensus 270 ~~~r~~E 276 (282)
..+-++=
T Consensus 710 ~~~l~p~ 716 (881)
T KOG0966|consen 710 KQRLLPW 716 (881)
T ss_pred hhhcccc
Confidence 7765553
No 41
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.73 E-value=0.00017 Score=57.34 Aligned_cols=102 Identities=15% Similarity=0.057 Sum_probs=66.8
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc----
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI---- 87 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~---- 87 (282)
.+++|+|+||++. ..... .+ -.....|++.++|+.+.+ .+.++|.|++.
T Consensus 2 ~~~~D~dgtL~~~--~~~~~-~~-----------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~ 55 (132)
T TIGR01662 2 GVVLDLDGTLTDD--VPYVD-DE-----------------------DERILYPEVPDALAELKEAGYKVVIVTNQSGIGR 55 (132)
T ss_pred EEEEeCCCceecC--CCCCC-CH-----------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCccccc
Confidence 6899999999963 11111 00 123578999999999964 59999999999
Q ss_pred ----HHHHHHHHhhhcCCCcccccccEEEccCCCC----Cceeccccc-cccCCceEEEcCC-h-hhhh
Q 041003 88 ----RSYAMMMAKLLNPKCEYHISSRLITREDFKE----KGKKSGDLV-LRQEWGVVIVDDT-E-KVWK 145 (282)
Q Consensus 88 ----~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~----~~~KdL~~l-~~~~~~vvivDd~-~-~~~~ 145 (282)
..++.++++.+.-.. + .+++...+.+ .+.+-++++ .-+.+++++|+|+ . ++..
T Consensus 56 ~~~~~~~~~~~l~~~~l~~--~---~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~ 119 (132)
T TIGR01662 56 GKFSSGRVARRLEELGVPI--D---VLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQA 119 (132)
T ss_pred cHHHHHHHHHHHHHCCCCE--E---EEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHH
Confidence 888899998886541 1 1222222222 123344455 3578899999994 3 4443
No 42
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.72 E-value=9.3e-05 Score=60.37 Aligned_cols=105 Identities=11% Similarity=-0.017 Sum_probs=63.8
Q ss_pred eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcH--
Q 041003 12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIR-- 88 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~-- 88 (282)
.+|++|+||||+......-.. .+ --+...||+.++|+.+. +.|.++|.|++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~-~~-----------------------~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~ 56 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPR-SL-----------------------DDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIG 56 (147)
T ss_pred CeEEEeCCCceeccCCcccCC-CH-----------------------HHeEEcCChHHHHHHHHHCCCEEEEEeCCCccc
Confidence 368999999999987532111 00 01357899999999996 5699999999874
Q ss_pred -------------HHHHHHHhhhcCCC-cccccccEEEccC--CCCC----ceeccccccccCCceEEEcCCh
Q 041003 89 -------------SYAMMMAKLLNPKC-EYHISSRLITRED--FKEK----GKKSGDLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 89 -------------~Ya~~v~~~ldp~~-~~f~~~rv~~r~~--~~~~----~~KdL~~l~~~~~~vvivDd~~ 141 (282)
.++..+++.++-.- .+| .......+. +.++ +.+-+.+++-+.+++++|+|++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~ 128 (147)
T TIGR01656 57 RGYFSAEAFRAPNGRVLELLRQLGVAVDGVL-FCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRL 128 (147)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhCCCceeEEE-ECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCH
Confidence 56666777765431 111 010000111 1111 1222233445788999999986
No 43
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.71 E-value=3.1e-05 Score=63.13 Aligned_cols=77 Identities=9% Similarity=0.002 Sum_probs=56.2
Q ss_pred EEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-----CceeccccccccCCc
Q 041003 60 LVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGDLVLRQEWG 133 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-----~~~KdL~~l~~~~~~ 133 (282)
.....||+.++|+.+. +.+.++|.|++.+..+...++.+ -..+| ..++..++... .+.+-+++++.+. +
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f--~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~ 136 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDYF--DLILGSDEFGAKPEPEIFLAALESLGLPP-E 136 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhcC--cEEEecCCCCCCcCHHHHHHHHHHcCCCC-C
Confidence 3445699999999995 56999999999999999999985 22356 56777776542 1222334445456 8
Q ss_pred eEEEcCCh
Q 041003 134 VVIVDDTE 141 (282)
Q Consensus 134 vvivDd~~ 141 (282)
+++|+|++
T Consensus 137 ~l~iGDs~ 144 (154)
T TIGR01549 137 VLHVGDNL 144 (154)
T ss_pred EEEEeCCH
Confidence 99999996
No 44
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=97.64 E-value=9.5e-05 Score=73.28 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=67.4
Q ss_pred ceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCC----CCcHHHHHHHHCCCceecHHHHHHHHHh
Q 041003 195 RCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR----LGIKGHRLAEQHNKFLVHPQWIYAAYYL 270 (282)
Q Consensus 195 G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~----~~t~K~~~A~~~gi~IV~~~WL~~c~~~ 270 (282)
-.+.+.+|..|.. ...+...|.. +....++..+||+|+..+. ..|.|+..+...|.||++..|+.+|++.
T Consensus 478 k~~~~~s~l~p~e---k~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~ 551 (684)
T KOG4362|consen 478 KLVLLVSGLTPSE---KQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKL 551 (684)
T ss_pred ceeeeeccCCcch---HHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHh
Confidence 4556667877764 5667777777 7777888999999998543 3589999999999999999999999999
Q ss_pred CCcCCCCCCCC
Q 041003 271 WSRQVEKDYFP 281 (282)
Q Consensus 271 ~~r~~E~~y~~ 281 (282)
.+.++|++|+.
T Consensus 552 ~~~~~eepfEl 562 (684)
T KOG4362|consen 552 RKWVSEEPFEL 562 (684)
T ss_pred cCCCCCCCeeE
Confidence 99999999974
No 45
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.63 E-value=6.3e-05 Score=68.36 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=81.7
Q ss_pred CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCc
Q 041003 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRI 87 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~ 87 (282)
.++..+++|+|+||......... ++. . ..-....|++.++|+.+.+. +.++|.|+..
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~~~--~~~--------~------------~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~ 213 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRSPY--DWT--------K------------VKEDKPNPMVVELVKMYKAAGYEIIVVSGRD 213 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCCcc--chh--------h------------cccCCCChhHHHHHHHHHhCCCEEEEEeCCC
Confidence 45678999999999987542110 111 0 01234689999999999764 9999999999
Q ss_pred HHHHHHHHhhhcCCCcccccccEEEccC-------CCC------Cceeccccccc-cCCceEEEcCChhhhhhCccCee
Q 041003 88 RSYAMMMAKLLNPKCEYHISSRLITRED-------FKE------KGKKSGDLVLR-QEWGVVIVDDTEKVWKDHKEHLM 152 (282)
Q Consensus 88 ~~Ya~~v~~~ldp~~~~f~~~rv~~r~~-------~~~------~~~KdL~~l~~-~~~~vvivDd~~~~~~~~~~N~i 152 (282)
...+..+++.|+..+.+| +.++..+. +.. ...+.|..++. +.+.+++|||++..-.....+++
T Consensus 214 ~~~~~~~l~~l~~~~~~f--~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi 290 (300)
T PHA02530 214 GVCEEDTVEWLRQTDIWF--DDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGL 290 (300)
T ss_pred hhhHHHHHHHHHHcCCch--hhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCC
Confidence 999999999999887667 55555552 111 12234444454 56899999999955543334444
No 46
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.61 E-value=0.00017 Score=60.07 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=67.1
Q ss_pred eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCC----
Q 041003 12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTR---- 86 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~---- 86 (282)
..+.||.||||++..... .. . . ..-.++.-||+.++|+++.+ .|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~~-~~-~--------------------~-~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~ 58 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSD-FQ-V--------------------D-ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLG 58 (161)
T ss_pred CEEEEeCCCCccccCCCc-cc-c--------------------C-CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCcccc
Confidence 578999999999954311 00 0 0 01146788999999999986 5999999996
Q ss_pred -----------cHHHHHHHHhhhcCCCcccccccEEE----ccCCCC--C----ceeccccccccCCceEEEcCCh
Q 041003 87 -----------IRSYAMMMAKLLNPKCEYHISSRLIT----REDFKE--K----GKKSGDLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 87 -----------~~~Ya~~v~~~ldp~~~~f~~~rv~~----r~~~~~--~----~~KdL~~l~~~~~~vvivDd~~ 141 (282)
...++..+++.++-. | ...+++ .+++.. + ...-++..+-+.+++++|+|+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~~gl~---f-d~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~ 130 (161)
T TIGR01261 59 TPSFPQADFDGPHNLMLQIFRSQGII---F-DDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRE 130 (161)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHCCCc---e-eEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCH
Confidence 366778888777765 5 233343 244422 1 1112223344778999999996
No 47
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.59 E-value=0.00013 Score=65.39 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=59.9
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccccc-cCC
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLR-QEW 132 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~-~~~ 132 (282)
+..-||+.++|+.+.+ .+.+.|-|++.+..+..+++.+.-.+.+| +.+++.++... .+.+-+++++- +.+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~--d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~ 177 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRP--DHVVTTDDVPAGRPYPWMALKNAIELGVYDVA 177 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCc--eEEEcCCcCCCCCCChHHHHHHHHHcCCCCCc
Confidence 5678999999999964 59999999999999999998875444333 56777776532 23344555554 368
Q ss_pred ceEEEcCChh
Q 041003 133 GVVIVDDTEK 142 (282)
Q Consensus 133 ~vvivDd~~~ 142 (282)
.+++|+|++.
T Consensus 178 e~l~IGDs~~ 187 (267)
T PRK13478 178 ACVKVDDTVP 187 (267)
T ss_pred ceEEEcCcHH
Confidence 8999999984
No 48
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.56 E-value=0.00028 Score=59.26 Aligned_cols=77 Identities=9% Similarity=-0.024 Sum_probs=48.0
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcH---------------HHHHHHHhhhcCCCcccccccEEEc-----------
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIR---------------SYAMMMAKLLNPKCEYHISSRLITR----------- 113 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~---------------~Ya~~v~~~ldp~~~~f~~~rv~~r----------- 113 (282)
+.+-||+.++|+++.+ .|.++|.|++.. .|...++..+... | ..++..
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~~i~~~~~~~~~~~~~~ 99 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD---L--DGIYYCPHHPEGVEEFR 99 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC---c--cEEEECCCCCccccccc
Confidence 4477999999999975 599999999985 3444444433222 2 222221
Q ss_pred cCCC--C----CceeccccccccCCceEEEcCChh
Q 041003 114 EDFK--E----KGKKSGDLVLRQEWGVVIVDDTEK 142 (282)
Q Consensus 114 ~~~~--~----~~~KdL~~l~~~~~~vvivDd~~~ 142 (282)
++|. + .+.+-+++++-+++++++|+|+..
T Consensus 100 ~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~ 134 (176)
T TIGR00213 100 QVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLE 134 (176)
T ss_pred CCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHH
Confidence 1222 1 223344555567899999999873
No 49
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.54 E-value=0.0004 Score=58.48 Aligned_cols=101 Identities=9% Similarity=-0.101 Sum_probs=62.6
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcH-
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIR- 88 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~- 88 (282)
.+.|++|+||||+-..... .. . . -.+...||+.++|+++.+. |.+.|.|+++.
T Consensus 3 ~~~~~~d~~~t~~~~~~~~-~~-----~------------------~-~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~ 57 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGY-VK-----S------------------P-DEWIPIPGSIEAIARLKQAGYRVVVATNQSGI 57 (181)
T ss_pred ccEEEEECCCCcccCCccc-cC-----C------------------H-HHeEECCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 4688999999986653210 00 0 0 0245789999999999865 99999999873
Q ss_pred --------------HHHHHHHhhhcCCCcccccccEEEccC-----CC--C----CceeccccccccCCceEEEcCCh
Q 041003 89 --------------SYAMMMAKLLNPKCEYHISSRLITRED-----FK--E----KGKKSGDLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 89 --------------~Ya~~v~~~ldp~~~~f~~~rv~~r~~-----~~--~----~~~KdL~~l~~~~~~vvivDd~~ 141 (282)
++...+++.+ +..| ..++...+ +. + .+.+-+..++-+.+++++|+|++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~---g~~f--~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~ 130 (181)
T PRK08942 58 ARGLFTEAQLNALHEKMDWSLADR---GGRL--DGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSL 130 (181)
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHc---CCcc--ceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCH
Confidence 3333344433 2234 34443322 11 1 22344445556789999999997
No 50
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.52 E-value=0.00037 Score=61.67 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=61.6
Q ss_pred cchhcCCCeeEEEeCCCceeeeeccCccc----hhh-HHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-C
Q 041003 4 EMVYRQKKLHLVLDLDQTLPHAVDIDILA----SKD-RKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-M 77 (282)
Q Consensus 4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~----~~~-~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~ 77 (282)
++|-.++++.+++||||||+.|+..-..+ ++. ..++... +....+. ....-.....|++.+||+.+.+ -
T Consensus 56 ~~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~----~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~G 130 (237)
T TIGR01672 56 NSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQ----VFWEKVN-NGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred HhcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcCh----HHHHHHH-HhcccCCcchhHHHHHHHHHHHCC
Confidence 46667777899999999999998721011 010 0010000 0000000 0111223344559999999965 5
Q ss_pred ceEEEEcCC----cHHHHHHHHhhhcCCCcccccccEEEccC
Q 041003 78 YDIYLCTTR----IRSYAMMMAKLLNPKCEYHISSRLITRED 115 (282)
Q Consensus 78 yei~i~T~~----~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~ 115 (282)
+.++|.|+. .+.+++.+++.+.-.. +| .-++..++
T Consensus 131 ~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f--~~i~~~d~ 169 (237)
T TIGR01672 131 DAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MN--PVIFAGDK 169 (237)
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHhCCch-he--eEEECCCC
Confidence 899999998 6679999998886554 45 44454443
No 51
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.51 E-value=0.00013 Score=73.82 Aligned_cols=91 Identities=14% Similarity=0.032 Sum_probs=64.9
Q ss_pred ccchhh-eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEeccc-CCCc-------------------------cEEE
Q 041003 185 LGKIQR-QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVY-NLSV-------------------------AQVV 237 (282)
Q Consensus 185 L~~~r~-~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~-~~~v-------------------------THlV 237 (282)
+.+.++ .+|.||++.||+.+.++ ...+.-.+.+||.+.... ..-- --||
T Consensus 917 lEe~~gkniFd~cvF~lTsa~~sd----~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLI 992 (1176)
T KOG3548|consen 917 LEEAIGKNIFDGCVFMLTSANRSD----SASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLI 992 (1176)
T ss_pred chhhhCcchhcceeEEEeccccch----hhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEe
Confidence 333344 79999999999987654 445555566888774431 1101 1233
Q ss_pred EcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCCcCCCCCCC
Q 041003 238 SVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYF 280 (282)
Q Consensus 238 ~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~y~ 280 (282)
+.+ -..|.||..|++.|+++||+.||.+|++.++.+|=.+|+
T Consensus 993 sdt-h~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YL 1034 (1176)
T KOG3548|consen 993 SDT-HYRTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYL 1034 (1176)
T ss_pred ehh-hhHHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhc
Confidence 321 235889999999999999999999999999999977775
No 52
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.47 E-value=0.00019 Score=73.95 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=64.4
Q ss_pred eeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCCcCC
Q 041003 196 CTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQV 275 (282)
Q Consensus 196 ~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~ 275 (282)
..+.|++... ...+.+.++.+|+.+.. -....||+|+.. -..|.|.-.|...|++||+++||.+|.+.+..+|
T Consensus 660 ~~~lfs~~~~-----~~~~k~~~k~lg~s~~s-s~~e~Th~i~~r-irRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~d 732 (896)
T KOG2043|consen 660 IEVLFSDKND-----GKNYKLAKKFLGGSVAS-SDSEATHFIADR-IRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLD 732 (896)
T ss_pred eeeeeeeccC-----chhhhhHHhhccceeec-ccccceeeeehh-hhccHHHHhhhccCCcccchHHHHHHhhcccccc
Confidence 4466776633 23467788888988774 457889999993 3579999999999999999999999999999999
Q ss_pred CCCCCC
Q 041003 276 EKDYFP 281 (282)
Q Consensus 276 E~~y~~ 281 (282)
|+.|..
T Consensus 733 ek~yil 738 (896)
T KOG2043|consen 733 EKPYIL 738 (896)
T ss_pred Cccccc
Confidence 999964
No 53
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.46 E-value=0.00043 Score=62.07 Aligned_cols=79 Identities=18% Similarity=0.082 Sum_probs=61.1
Q ss_pred cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCc-eEEE
Q 041003 4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMY-DIYL 82 (282)
Q Consensus 4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~y-ei~i 82 (282)
+.+.-+.+=++|+|||+|||-....... .-|.+.+-|.++.+.+ -+++
T Consensus 115 ~~~~~~~phVIVfDlD~TLItd~~~v~I-------------------------------r~~~v~~sL~~Lk~~g~vLvL 163 (297)
T PF05152_consen 115 ESLVWEPPHVIVFDLDSTLITDEGDVRI-------------------------------RDPAVYDSLRELKEQGCVLVL 163 (297)
T ss_pred hhccCCCCcEEEEECCCcccccCCcccc-------------------------------CChHHHHHHHHHHHcCCEEEE
Confidence 3455567779999999999987542111 2378899999998765 8999
Q ss_pred EcCCcHHHHHHHHhhhcCCCcccccccEEEccCC
Q 041003 83 CTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF 116 (282)
Q Consensus 83 ~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~ 116 (282)
||.|+++||..-++.++-.+ +| +-+++++.-
T Consensus 164 WSyG~~eHV~~sl~~~~L~~-~F--d~ii~~G~~ 194 (297)
T PF05152_consen 164 WSYGNREHVRHSLKELKLEG-YF--DIIICGGNK 194 (297)
T ss_pred ecCCCHHHHHHHHHHhCCcc-cc--EEEEeCCcc
Confidence 99999999999999998664 67 667776543
No 54
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.45 E-value=0.00059 Score=57.05 Aligned_cols=103 Identities=15% Similarity=-0.002 Sum_probs=63.2
Q ss_pred CeeEEEeCCCceeeeeccCcc-chhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcH
Q 041003 11 KLHLVLDLDQTLPHAVDIDIL-ASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIR 88 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~ 88 (282)
+..+++|+||||+-+...... ..+ .-+..+-||+.+.|+++. +.|.+.|.|++..
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~-----------------------~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~ 69 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSA-----------------------SDWRFLYPEIPAKLQELDDEGYKIVIFTNQSG 69 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCCh-----------------------HHeEEecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 456889999999976432100 000 012235699999999995 6799999999876
Q ss_pred H------------HHHHHHhhhcCCCcccccccEEEccCC--CCC----ceecccccc--ccCCceEEEcCCh
Q 041003 89 S------------YAMMMAKLLNPKCEYHISSRLITREDF--KEK----GKKSGDLVL--RQEWGVVIVDDTE 141 (282)
Q Consensus 89 ~------------Ya~~v~~~ldp~~~~f~~~rv~~r~~~--~~~----~~KdL~~l~--~~~~~vvivDd~~ 141 (282)
. ++..+++.++-.. ..+++-+.. .++ ...-+++++ -+.+++++|.|++
T Consensus 70 ~~~~~~~~~~~~~~i~~~l~~~gl~~-----~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 70 IGRGKLSAESFKNKIEAFLEKLKVPI-----QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred cccCcccHHHHHHHHHHHHHHcCCCE-----EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 3 4566677666432 123333322 111 112233444 4678999999986
No 55
>PLN02940 riboflavin kinase
Probab=97.35 E-value=0.0002 Score=67.76 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=60.0
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHh-hhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAK-LLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~-~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
+...||+.++|+.+.+ .+.+.|-|++.+.++..+++ ..+- ..+| +.+++.+++.. .+.+-++.++-..+
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl-~~~F--d~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~ 168 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGW-KESF--SVIVGGDEVEKGKPSPDIFLEAAKRLNVEPS 168 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccCh-HhhC--CEEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence 5678999999999965 59999999999999998876 4432 3367 66788887642 22334445555788
Q ss_pred ceEEEcCChhhh
Q 041003 133 GVVIVDDTEKVW 144 (282)
Q Consensus 133 ~vvivDd~~~~~ 144 (282)
++++|+|+..--
T Consensus 169 ~~l~VGDs~~Di 180 (382)
T PLN02940 169 NCLVIEDSLPGV 180 (382)
T ss_pred HEEEEeCCHHHH
Confidence 999999998433
No 56
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.34 E-value=0.0002 Score=60.97 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=51.6
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCC---cccccccEEEccCCCCC---ceeccccccccCCce
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKC---EYHISSRLITREDFKEK---GKKSGDLVLRQEWGV 134 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~---~~f~~~rv~~r~~~~~~---~~KdL~~l~~~~~~v 134 (282)
++..||+.++|++|.+.+.+++-|++.........+.+.-.+ .+| +.+++.++.... +.+-+++++ ++.+
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f--~~i~~~~~~~~kp~~~~~a~~~~~--~~~~ 148 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAF--SEVLMCGHDESKEKLFIKAKEKYG--DRVV 148 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcc--cEEEEeccCcccHHHHHHHHHHhC--CCcE
Confidence 668999999999998878888778776655554555553221 145 445655554321 111222333 6689
Q ss_pred EEEcCChhhhh
Q 041003 135 VIVDDTEKVWK 145 (282)
Q Consensus 135 vivDd~~~~~~ 145 (282)
|+|||+..-..
T Consensus 149 v~vgDs~~di~ 159 (197)
T PHA02597 149 CFVDDLAHNLD 159 (197)
T ss_pred EEeCCCHHHHH
Confidence 99999986554
No 57
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.24 E-value=0.00019 Score=62.02 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=54.1
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEc----------cCCCC-----Cceecc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITR----------EDFKE-----KGKKSG 124 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r----------~~~~~-----~~~KdL 124 (282)
+..+||+.+||+.+.+ .+.++|.|+|...++..+++.+.-.. +| .+.+.+- +.+.. .+.+-+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 161 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AF-ANRLEVEDGKLTGLVEGPIVDASYKGKTLLILL 161 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eE-eeEEEEECCEEEEEecCcccCCcccHHHHHHHH
Confidence 5689999999999976 59999999999999999999876443 45 4332211 11110 011112
Q ss_pred ccccccCCceEEEcCChh
Q 041003 125 DLVLRQEWGVVIVDDTEK 142 (282)
Q Consensus 125 ~~l~~~~~~vvivDd~~~ 142 (282)
++++-+.+++++|+|+..
T Consensus 162 ~~~~~~~~~~i~iGDs~~ 179 (219)
T TIGR00338 162 RKEGISPENTVAVGDGAN 179 (219)
T ss_pred HHcCCCHHHEEEEECCHH
Confidence 233346788999999863
No 58
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00046 Score=64.09 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCcccccccchh---heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecc-----------cCCCccEEEEcCCCC
Q 041003 178 CGDVRCFLGKIQ---RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDV-----------YNLSVAQVVSVSSRL 243 (282)
Q Consensus 178 ~~dvr~iL~~~r---~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~-----------~~~~vTHlV~~~~~~ 243 (282)
..|+......+- ..+|+|.+++++.-+|.+ .|.=++.++||.|..+ ++..|||-|+. ++
T Consensus 333 n~d~~~~vsk~~Ss~~slFS~f~FyisreVp~d-----sLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~d--rp 405 (591)
T COG5163 333 NKDIMEMVSKPCSSLKSLFSGFKFYISREVPGD-----SLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVD--RP 405 (591)
T ss_pred chhhhhhccCcCcchhhhhhceEEEEeccccch-----HHHHHHHHcCCcccCchhhccCCchhhccchhhhhhcc--ch
Confidence 344444444432 368999999999988864 5677899999998654 45679999998 54
Q ss_pred C-cHHHHHHHHCCCceecHHHHHHHHHhCCcCCCCCCCC
Q 041003 244 G-IKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFP 281 (282)
Q Consensus 244 ~-t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~y~~ 281 (282)
- ..|+ .|..-|.|+||.+|+..+.+.+-+.|.|
T Consensus 406 ~~~~kv-----egrtYiQPQw~fDsiNkG~l~~~~~Y~~ 439 (591)
T COG5163 406 VMKNKV-----EGRTYIQPQWLFDSINKGKLACVENYCV 439 (591)
T ss_pred hhhhhh-----cceeeechHHHHhhhccccchhhhhccc
Confidence 2 2222 3889999999999999999999888865
No 59
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.19 E-value=0.00076 Score=55.03 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=65.5
Q ss_pred EEEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccC
Q 041003 59 FLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQE 131 (282)
Q Consensus 59 ~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~ 131 (282)
......||+.++|+.++ +.+.+++.|++.+.++..+++.+... .+| +.+++.++... .+.+-++.++-++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f--~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p 150 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYF--DEIISSDDVGSRKPDPDAYRRALEKLGIPP 150 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGC--SEEEEGGGSSSSTTSHHHHHHHHHHHTSSG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccc--ccccccchhhhhhhHHHHHHHHHHHcCCCc
Confidence 46889999999999998 88999999999999999999998655 467 67787776653 1223334455578
Q ss_pred CceEEEcCChhhh
Q 041003 132 WGVVIVDDTEKVW 144 (282)
Q Consensus 132 ~~vvivDd~~~~~ 144 (282)
+++++|||++.-.
T Consensus 151 ~~~~~vgD~~~d~ 163 (176)
T PF13419_consen 151 EEILFVGDSPSDV 163 (176)
T ss_dssp GGEEEEESSHHHH
T ss_pred ceEEEEeCCHHHH
Confidence 9999999998443
No 60
>PRK08238 hypothetical protein; Validated
Probab=97.03 E-value=0.0041 Score=60.62 Aligned_cols=119 Identities=13% Similarity=0.219 Sum_probs=76.4
Q ss_pred EecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--Cceeccccccc--cCCceEE
Q 041003 62 KVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--KGKKSGDLVLR--QEWGVVI 136 (282)
Q Consensus 62 ~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~~~KdL~~l~~--~~~~vvi 136 (282)
..+|++.++++++. +-+.++|-|++.+.+++++++.++- | +.+++.++... ..-| ...+.. +.+.++.
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----F--d~Vigsd~~~~~kg~~K-~~~l~~~l~~~~~~y 144 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----F--DGVFASDGTTNLKGAAK-AAALVEAFGERGFDY 144 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----C--CEEEeCCCccccCCchH-HHHHHHHhCccCeeE
Confidence 47899999999996 5699999999999999999999853 6 56666554321 1112 112211 3355788
Q ss_pred EcCCh---hhhhhCccCeeeH--HHHHHHHHHHHhHhhcccccCCCCCcccccccchhh
Q 041003 137 VDDTE---KVWKDHKEHLMLL--NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQR 190 (282)
Q Consensus 137 vDd~~---~~~~~~~~N~i~i--D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~r~ 190 (282)
+.|+. .+|. .-+|.+.| |..|.+...-...... .|.. ...-.+..++-+|.
T Consensus 145 vGDS~~Dlp~~~-~A~~av~Vn~~~~l~~~a~~~~~~~~-~~~~-~~~~~~~~~~l~Rp 200 (479)
T PRK08238 145 AGNSAADLPVWA-AARRAIVVGASPGVARAARALGPVER-VFPP-RPARLRTWLKALRV 200 (479)
T ss_pred ecCCHHHHHHHH-hCCCeEEECCCHHHHHHHHHcCCcce-ecCC-CchHHHHHHHHhCC
Confidence 88887 6666 45788888 6666665554433222 2221 23345666666664
No 61
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=96.96 E-value=0.0023 Score=56.64 Aligned_cols=99 Identities=8% Similarity=0.056 Sum_probs=56.9
Q ss_pred cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCC-CCCccee--ecceeEEEEecccHHHHHHHH-hcCce
Q 041003 4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSS-SDGDLFK--MASELFLVKVRSYIRKFLKKA-SKMYD 79 (282)
Q Consensus 4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~-~d~~~~~--~~~~~~~v~~RP~l~~FL~~~-~~~ye 79 (282)
+.+-.++++.+++|+|||+++++...-.+ ++ .+..+.... ....... ......+....||+.+||+.+ .+-++
T Consensus 56 ~~~~~~~p~av~~DIDeTvldnsp~~~~~--~~-~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~ 132 (237)
T PRK11009 56 KSLEGRPPMAVGFDIDDTVLFSSPGFWRG--KK-TFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDS 132 (237)
T ss_pred hhccCCCCcEEEEECcCccccCCchheee--ee-ccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCe
Confidence 45555667799999999999975421111 00 000000000 0000000 011233466777799999999 56799
Q ss_pred EEEEcC----CcHHHHHHHHhhhcC-CCccc
Q 041003 80 IYLCTT----RIRSYAMMMAKLLNP-KCEYH 105 (282)
Q Consensus 80 i~i~T~----~~~~Ya~~v~~~ldp-~~~~f 105 (282)
|++-|+ ....++..+++.+.- ...+|
T Consensus 133 I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f 163 (237)
T PRK11009 133 IYFITGRTATKTETVSKTLADDFHIPADNMN 163 (237)
T ss_pred EEEEeCCCCcccHHHHHHHHHHcCCCcccce
Confidence 999999 456688888876653 23355
No 62
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.94 E-value=0.0019 Score=54.01 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=66.4
Q ss_pred chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEE
Q 041003 5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLC 83 (282)
Q Consensus 5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~ 83 (282)
.+.+.+-..+|+|+|+||...... ...||+.++|+.+.+. +.++|.
T Consensus 19 ~~~~~~v~~vv~D~Dgtl~~~~~~---------------------------------~~~pgv~e~L~~Lk~~g~~l~I~ 65 (170)
T TIGR01668 19 LLKKVGIKGVVLDKDNTLVYPDHN---------------------------------EAYPALRDWIEELKAAGRKLLIV 65 (170)
T ss_pred HHHHCCCCEEEEecCCccccCCCC---------------------------------CcChhHHHHHHHHHHcCCEEEEE
Confidence 445555568899999999865221 1468999999999765 999999
Q ss_pred cCCc-HHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCCh--hhhhh
Q 041003 84 TTRI-RSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTE--KVWKD 146 (282)
Q Consensus 84 T~~~-~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~--~~~~~ 146 (282)
|++. ...+..+.+.++-.. ++ ..... .+.+-++.++-+.+++++|+|+. ++-..
T Consensus 66 Sn~~~~~~~~~~~~~~gl~~-~~--------~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA 125 (170)
T TIGR01668 66 SNNAGEQRAKAVEKALGIPV-LP--------HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG 125 (170)
T ss_pred eCCchHHHHHHHHHHcCCEE-Ec--------CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH
Confidence 9999 677777777654321 11 11111 12233344555778999999996 45543
No 63
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.93 E-value=0.0059 Score=54.95 Aligned_cols=116 Identities=21% Similarity=0.158 Sum_probs=70.9
Q ss_pred cCCCeeEEEeCCCceeeeeccC-----cc-c--h-hhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cC
Q 041003 8 RQKKLHLVLDLDQTLPHAVDID-----IL-A--S-KDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KM 77 (282)
Q Consensus 8 ~~~kl~LVLDLD~TLihs~~~~-----~~-~--~-~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~ 77 (282)
+.+++.+|+|+|||++..+.-. .. + + .+.... ..--...-||+.+||+.+. +-
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv-----------------~~~~a~~ipGA~e~L~~L~~~G 134 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWV-----------------QAAQAKPVAGALDFLNYANSKG 134 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHH-----------------HcCCCCcCccHHHHHHHHHHCC
Confidence 4678899999999999876320 00 0 0 011100 0012346799999999995 45
Q ss_pred ceEEEEcCCcHHHHHHHHhhhcCCCc--ccccccEEEccCCCCCceecccc--ccccCCceEEEcCChhhh
Q 041003 78 YDIYLCTTRIRSYAMMMAKLLNPKCE--YHISSRLITREDFKEKGKKSGDL--VLRQEWGVVIVDDTEKVW 144 (282)
Q Consensus 78 yei~i~T~~~~~Ya~~v~~~ldp~~~--~f~~~rv~~r~~~~~~~~KdL~~--l~~~~~~vvivDd~~~~~ 144 (282)
..+++.|+....+.+...+.|...|. .+ .+.++.|++-. .|.-++ +...-.-++.|.|+..=+
T Consensus 135 ~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~-~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~vGD~~~Df 201 (266)
T TIGR01533 135 VKIFYVSNRSEKEKAATLKNLKRFGFPQAD-EEHLLLKKDKS---SKESRRQKVQKDYEIVLLFGDNLLDF 201 (266)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHcCcCCCC-cceEEeCCCCC---CcHHHHHHHHhcCCEEEEECCCHHHh
Confidence 89999999987777766666654442 12 35677776432 243222 223445588888886544
No 64
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.87 E-value=0.0013 Score=56.81 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=62.0
Q ss_pred EEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
++.+.||+.+||+++.+. +.+.|.|++.+.++...++.++-.. +| +.+++.++... .+.+-+++++-+.+
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 168 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FF--DAVITSEEEGVEKPHPKIFYAALKRLGVKPE 168 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hc--cEEEEeccCCCCCCCHHHHHHHHHHcCCChh
Confidence 467899999999999765 9999999999999999998887544 67 56777766542 23344555666778
Q ss_pred ceEEEcCCh
Q 041003 133 GVVIVDDTE 141 (282)
Q Consensus 133 ~vvivDd~~ 141 (282)
++++|+|++
T Consensus 169 ~~~~igDs~ 177 (221)
T TIGR02253 169 EAVMVGDRL 177 (221)
T ss_pred hEEEECCCh
Confidence 999999987
No 65
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.84 E-value=0.0052 Score=57.56 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=64.8
Q ss_pred CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCC--
Q 041003 10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTR-- 86 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~-- 86 (282)
+|..|+||=|+||+......-. ......+...||+.++|+.+.+ .|.++|.|++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~-----------------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g 57 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQ-----------------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDG 57 (354)
T ss_pred CCcEEEEeCCCCccCCCCcccc-----------------------ccCcccceECcCHHHHHHHHHhCCCeEEEEECCcc
Confidence 4678999999999998532100 0011246799999999999975 5999999995
Q ss_pred -------------cHHHHHHHHhhhcCCCcccccccEEEc-----cCCCC--Cce----eccccccccCCceEEEcCCh
Q 041003 87 -------------IRSYAMMMAKLLNPKCEYHISSRLITR-----EDFKE--KGK----KSGDLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 87 -------------~~~Ya~~v~~~ldp~~~~f~~~rv~~r-----~~~~~--~~~----KdL~~l~~~~~~vvivDd~~ 141 (282)
.+.++..+++.+.- .| ..++.. ++|.. +.. .-+..+.-+++++++|.|+.
T Consensus 58 ~G~~~~~~~~l~~~~~~i~~iL~~~gl---~f--d~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~ 131 (354)
T PRK05446 58 LGTDSFPQEDFDPPHNLMMQIFESQGI---KF--DEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRE 131 (354)
T ss_pred ccCccccHHHHhhHHHHHHHHHHHcCC---ce--eeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCH
Confidence 24455555555433 34 333322 34322 111 11122234678999999987
No 66
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.69 E-value=0.004 Score=61.19 Aligned_cols=106 Identities=16% Similarity=0.041 Sum_probs=67.8
Q ss_pred CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc
Q 041003 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI 87 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~ 87 (282)
.+..++.||+||||+.+....... . + ... |..+-||+.+.|+++.+ .|.|+|+|+..
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~-~-------------~-------~~d-~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~ 223 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFP-K-------------G-------PDD-WQIIFPEIPEKLKELEADGFKICIFTNQG 223 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCC-C-------------C-------HHH-eeecccCHHHHHHHHHHCCCEEEEEECCc
Confidence 456788999999999875321100 0 0 001 22356999999999975 59999999977
Q ss_pred H------------HHHHHHHhhhcCCCcccccccEEEccCCCC------C---ceeccc-cccccCCceEEEcCCh
Q 041003 88 R------------SYAMMMAKLLNPKCEYHISSRLITREDFKE------K---GKKSGD-LVLRQEWGVVIVDDTE 141 (282)
Q Consensus 88 ~------------~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~---~~KdL~-~l~~~~~~vvivDd~~ 141 (282)
. .++..+++.++-. | +-+++.++|.. + ..+++. .+.-+++..++|.|..
T Consensus 224 gI~~G~~~~~~~~~ki~~iL~~lgip---f--dviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 224 GIARGKINADDFKAKIEAIVAKLGVP---F--QVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred ccccCcccHHHHHHHHHHHHHHcCCc---e--EEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 7 5678888877643 5 34455555432 1 112221 1123778999999987
No 67
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.67 E-value=0.0029 Score=54.46 Aligned_cols=78 Identities=9% Similarity=0.074 Sum_probs=62.1
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccc-cccCCc
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLV-LRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l-~~~~~~ 133 (282)
+..+||+.++|+++.+.+.++|-|++.+.++..+++.+.-.+ +| +.+++.++... .+.+-++++ +-++++
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~f--d~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FF--DDIFVSEDAGIQKPDKEIFNYALERMPKFSKEE 172 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hc--CEEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence 688999999999998779999999999999999998875444 57 67787766542 233445666 667889
Q ss_pred eEEEcCCh
Q 041003 134 VVIVDDTE 141 (282)
Q Consensus 134 vvivDd~~ 141 (282)
+|+|+|++
T Consensus 173 ~v~igD~~ 180 (224)
T TIGR02254 173 VLMIGDSL 180 (224)
T ss_pred eEEECCCc
Confidence 99999985
No 68
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.61 E-value=0.0059 Score=50.70 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=75.7
Q ss_pred cccchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceE
Q 041003 2 NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDI 80 (282)
Q Consensus 2 ~~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei 80 (282)
+.+.|..++-..+++|||+|||-=.. +. .-|-+++-+.++.+. -.+
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~-~~--------------------------------~tpe~~~W~~e~k~~gi~v 65 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDN-PD--------------------------------ATPELRAWLAELKEAGIKV 65 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccC-CC--------------------------------CCHHHHHHHHHHHhcCCEE
Confidence 45678899999999999999995432 11 236788888888765 889
Q ss_pred EEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcCCh--hhhhhC
Q 041003 81 YLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTE--KVWKDH 147 (282)
Q Consensus 81 ~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd~~--~~~~~~ 147 (282)
+|.|++++.-+..++..||-...+- ..+-+. ...-|-|...+-+.++|++|-|+- ++...|
T Consensus 66 ~vvSNn~e~RV~~~~~~l~v~fi~~-A~KP~~-----~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggn 128 (175)
T COG2179 66 VVVSNNKESRVARAAEKLGVPFIYR-AKKPFG-----RAFRRALKEMNLPPEEVVMVGDQLFTDVLGGN 128 (175)
T ss_pred EEEeCCCHHHHHhhhhhcCCceeec-ccCccH-----HHHHHHHHHcCCChhHEEEEcchhhhhhhccc
Confidence 9999999999999999988663110 000000 012345555666889999999985 666655
No 69
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.49 E-value=0.0043 Score=54.99 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=63.5
Q ss_pred EEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
.+...||+.++|+.+. +.+.+.|-|++.+.++..+++.++-.. +| +.+++.+++.. .+.+-+++++-+.+
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F--d~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~ 182 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FF--QAVIIGSECEHAKPHPDPYLKALEVLKVSKD 182 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hC--cEEEecCcCCCCCCChHHHHHHHHHhCCChh
Confidence 3667899999999995 569999999999999999999987654 67 66777777542 23445556666789
Q ss_pred ceEEEcCChh
Q 041003 133 GVVIVDDTEK 142 (282)
Q Consensus 133 ~vvivDd~~~ 142 (282)
++++|+|++.
T Consensus 183 ~~l~vgDs~~ 192 (248)
T PLN02770 183 HTFVFEDSVS 192 (248)
T ss_pred HEEEEcCCHH
Confidence 9999999983
No 70
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.49 E-value=0.0043 Score=53.05 Aligned_cols=82 Identities=18% Similarity=0.087 Sum_probs=62.5
Q ss_pred EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
.+.++||+.++|+.+.+ .+.++|.|++.+.++..+++.++-.+ +| +.+++.++... .+.+-+++++-+.+
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~ 159 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YF--SVLIGGDSLAQRKPHPDPLLLAAERLGVAPQ 159 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hC--cEEEecCCCCCCCCChHHHHHHHHHcCCChh
Confidence 46789999999999975 59999999999999999999986544 56 56676665432 12344555666788
Q ss_pred ceEEEcCChhhh
Q 041003 133 GVVIVDDTEKVW 144 (282)
Q Consensus 133 ~vvivDd~~~~~ 144 (282)
++++|+|++.-.
T Consensus 160 ~~~~igDs~~d~ 171 (213)
T TIGR01449 160 QMVYVGDSRVDI 171 (213)
T ss_pred HeEEeCCCHHHH
Confidence 899999997444
No 71
>PRK09449 dUMP phosphatase; Provisional
Probab=96.48 E-value=0.0041 Score=53.79 Aligned_cols=78 Identities=10% Similarity=0.001 Sum_probs=60.5
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccccc-cCCc
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLR-QEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~-~~~~ 133 (282)
+...||+.++|+.+.+.|.+.|-|++.+.++...++.+.-.+ +| +.+++.++... .+.+-+++++. +.+.
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~f--d~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 170 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YF--DLLVISEQVGVAKPDVAIFDYALEQMGNPDRSR 170 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-Hc--CEEEEECccCCCCCCHHHHHHHHHHcCCCCccc
Confidence 568999999999999889999999999999999988876544 57 66777776542 23344455553 4578
Q ss_pred eEEEcCCh
Q 041003 134 VVIVDDTE 141 (282)
Q Consensus 134 vvivDd~~ 141 (282)
+++|+|++
T Consensus 171 ~~~vgD~~ 178 (224)
T PRK09449 171 VLMVGDNL 178 (224)
T ss_pred EEEEcCCc
Confidence 99999996
No 72
>PRK06769 hypothetical protein; Validated
Probab=96.47 E-value=0.0053 Score=51.48 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=46.4
Q ss_pred EecccHHHHHHHHhc-CceEEEEcCCcHHH-----HHHHHhhhcCCCcccccccEEEccCC------CC----Cceeccc
Q 041003 62 KVRSYIRKFLKKASK-MYDIYLCTTRIRSY-----AMMMAKLLNPKCEYHISSRLITREDF------KE----KGKKSGD 125 (282)
Q Consensus 62 ~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y-----a~~v~~~ldp~~~~f~~~rv~~r~~~------~~----~~~KdL~ 125 (282)
..-||+.++|++|.+ .|.++|.|++.... .......+...+ | ...+++-..+ .+ .+.+-++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~-~~~~~~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--F-DDIYLCPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--c-CEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence 467999999999965 59999999987521 012233333332 2 1222222211 11 2334455
Q ss_pred cccccCCceEEEcCCh
Q 041003 126 LVLRQEWGVVIVDDTE 141 (282)
Q Consensus 126 ~l~~~~~~vvivDd~~ 141 (282)
+++-+++.+++|+|++
T Consensus 105 ~l~~~p~~~i~IGD~~ 120 (173)
T PRK06769 105 KHGLDLTQCAVIGDRW 120 (173)
T ss_pred HcCCCHHHeEEEcCCH
Confidence 5566889999999997
No 73
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.47 E-value=0.0049 Score=51.15 Aligned_cols=78 Identities=14% Similarity=0.036 Sum_probs=56.1
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
+...||+.+||+.+.+ .+.++|.|++...+ ..+...++-.. +| +.+++.++... .+.+-+++++-++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 159 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LF--DVVIFSGDVGRGKPDPDIYLLALKKLGLKPEE 159 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HC--CEEEEcCCCCCCCCCHHHHHHHHHHcCCCcce
Confidence 6789999999999975 59999999999999 66665555443 56 55665554432 122333445557899
Q ss_pred eEEEcCChh
Q 041003 134 VVIVDDTEK 142 (282)
Q Consensus 134 vvivDd~~~ 142 (282)
+++|||++.
T Consensus 160 ~~~vgD~~~ 168 (183)
T TIGR01509 160 CLFVDDSPA 168 (183)
T ss_pred EEEEcCCHH
Confidence 999999984
No 74
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.46 E-value=0.0038 Score=53.03 Aligned_cols=79 Identities=6% Similarity=0.011 Sum_probs=60.1
Q ss_pred EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
+...||+.++|+.+.+. |.++|.|++...++..+++.+.-. .+| +.+++.++... .+.+-++.++-++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~ 167 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPF--DAVLSADAVRAYKPAPQVYQLALEALGVPPDE 167 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhh--heeEehhhcCCCCCCHHHHHHHHHHhCCChhh
Confidence 56789999999999876 999999999999999999887533 367 66777766542 122333345557899
Q ss_pred eEEEcCChh
Q 041003 134 VVIVDDTEK 142 (282)
Q Consensus 134 vvivDd~~~ 142 (282)
+++|+|++.
T Consensus 168 ~~~vgD~~~ 176 (198)
T TIGR01428 168 VLFVASNPW 176 (198)
T ss_pred EEEEeCCHH
Confidence 999999983
No 75
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.44 E-value=0.0039 Score=54.23 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=56.2
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC-C-C----ceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK-E-K----GKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~-~-~----~~KdL~~l~~~~~~ 133 (282)
...-||+.+.|+.+++ -|.+.|.|+.....++.+++.++-.. +| .-++.-++.. . + ...-+..++.+.++
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F--~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~ 164 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YF--DVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEE 164 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-cc--ceEEcCCCCCCCCcCHHHHHHHHHHhCCChhh
Confidence 5689999999999975 58999999999999999999987665 56 4445422222 1 1 11222334445568
Q ss_pred eEEEcCChh
Q 041003 134 VVIVDDTEK 142 (282)
Q Consensus 134 vvivDd~~~ 142 (282)
+++|-|+..
T Consensus 165 ~l~VGDs~~ 173 (220)
T COG0546 165 ALMVGDSLN 173 (220)
T ss_pred eEEECCCHH
Confidence 999999873
No 76
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=96.34 E-value=0.0062 Score=52.38 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=62.9
Q ss_pred EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
.+...||+.++|+.+.+ .+.+.|.|++.+.++..+++.++-.. +| +.+++.+++.. .+.+-+++++-+.+
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f--~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~ 156 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FF--DVVITLDDVEHAKPDPEPVLKALELLGAKPE 156 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ce--eEEEecCcCCCCCCCcHHHHHHHHHcCCCHH
Confidence 46788999999999975 69999999999999999999986554 67 66777776542 12333444555678
Q ss_pred ceEEEcCChhhh
Q 041003 133 GVVIVDDTEKVW 144 (282)
Q Consensus 133 ~vvivDd~~~~~ 144 (282)
++++|+|++.-.
T Consensus 157 ~~~~iGDs~~Di 168 (214)
T PRK13288 157 EALMVGDNHHDI 168 (214)
T ss_pred HEEEECCCHHHH
Confidence 999999998443
No 77
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=96.22 E-value=0.008 Score=51.32 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=61.8
Q ss_pred EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
.+...||+.++|+++.+ .+.++|.|++.+.++..+++.++-.+ +| +.+++.+++.. .+.+-+++++-+.+
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 149 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LF--DHVIGSDEVPRPKPAPDIVREALRLLDVPPE 149 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-he--eeEEecCcCCCCCCChHHHHHHHHHcCCChh
Confidence 46789999999999964 69999999999999999999887654 56 56777766532 12223334455678
Q ss_pred ceEEEcCChhhh
Q 041003 133 GVVIVDDTEKVW 144 (282)
Q Consensus 133 ~vvivDd~~~~~ 144 (282)
++++|+|++.-.
T Consensus 150 ~~l~igD~~~Di 161 (205)
T TIGR01454 150 DAVMVGDAVTDL 161 (205)
T ss_pred heEEEcCCHHHH
Confidence 999999997433
No 78
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=96.16 E-value=0.0054 Score=51.46 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=58.2
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC------C----Cceecccccccc
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK------E----KGKKSGDLVLRQ 130 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~------~----~~~KdL~~l~~~ 130 (282)
++..||+.++|+++. +.++|.|++.+.++..+++.++-.. +| +.+++.++.. + .+.+-+++++.+
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~f--d~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~ 157 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CF--DGIFCFDTANPDYLLPKPSPQAYEKALREAGVD 157 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hh--CeEEEeecccCccCCCCCCHHHHHHHHHHhCCC
Confidence 457899999999998 6899999999999999999986443 67 5667665532 1 122334445667
Q ss_pred CCceEEEcCChh
Q 041003 131 EWGVVIVDDTEK 142 (282)
Q Consensus 131 ~~~vvivDd~~~ 142 (282)
++++++|+|++.
T Consensus 158 ~~~~l~vgD~~~ 169 (184)
T TIGR01993 158 PERAIFFDDSAR 169 (184)
T ss_pred ccceEEEeCCHH
Confidence 899999999984
No 79
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.08 E-value=0.0096 Score=51.36 Aligned_cols=81 Identities=15% Similarity=0.033 Sum_probs=63.9
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV 134 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v 134 (282)
+...|++.++|+.+.+.|.++|.|||...++...++.+. -..+| +.+++.++.+. .+..-++.++-+++.+
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~F--d~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYF--DAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhh--heEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 678899999999998889999999999999999999987 44578 77777777652 1233444455578999
Q ss_pred EEEcCChhhh
Q 041003 135 VIVDDTEKVW 144 (282)
Q Consensus 135 vivDd~~~~~ 144 (282)
++|||+...-
T Consensus 175 l~VgD~~~~d 184 (229)
T COG1011 175 LFVGDSLEND 184 (229)
T ss_pred EEECCChhhh
Confidence 9999998544
No 80
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=95.99 E-value=0.0069 Score=50.25 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=33.9
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCC
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTR 86 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~ 86 (282)
++.+|||||||.+....... . ...| +..+-|++-+-|+++.+ -|.|+|+|+.
T Consensus 2 ia~fD~DgTLi~~~s~~~f~-~----------~~~D-----------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 2 IAFFDLDGTLIKTKSGKKFP-K----------DPDD-----------WKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp EEEE-SCTTTEE-STSTTS--S----------STCG-----------GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred EEEEeCCCCccCCCCCCcCc-C----------CHHH-----------hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 57899999999997632111 0 0011 34466789999999975 6999999996
No 81
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=95.90 E-value=0.015 Score=50.17 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=60.6
Q ss_pred EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
....+||+.+||+.+.+ .+.++|.|++...++..+++.++-.. +| +.+++.+++.. .+.+-+++++.+.+
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 167 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YF--SVVIGGDSLPNKKPDPAPLLLACEKLGLDPE 167 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Cc--cEEEcCCCCCCCCcChHHHHHHHHHcCCChh
Confidence 36789999999999975 59999999999999999999886543 56 55666555431 11223344555788
Q ss_pred ceEEEcCChhhh
Q 041003 133 GVVIVDDTEKVW 144 (282)
Q Consensus 133 ~vvivDd~~~~~ 144 (282)
++++|+|++.-.
T Consensus 168 ~~i~igD~~~Di 179 (226)
T PRK13222 168 EMLFVGDSRNDI 179 (226)
T ss_pred heEEECCCHHHH
Confidence 999999997433
No 82
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.85 E-value=0.0072 Score=51.52 Aligned_cols=84 Identities=10% Similarity=-0.001 Sum_probs=59.3
Q ss_pred EEEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccC
Q 041003 59 FLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQE 131 (282)
Q Consensus 59 ~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~ 131 (282)
.+...+||+.++|+.+.+ .+.++|-|++.+..+.........-..+| +.+++.+++.. .+..-+++++-++
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~~~~p 158 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAA--DHIYLSQDLGMRKPEARIYQHVLQAEGFSA 158 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhc--CEEEEecccCCCCCCHHHHHHHHHHcCCCh
Confidence 345689999999999975 59999999999887665543321123356 66777776653 2334455566688
Q ss_pred CceEEEcCChhhh
Q 041003 132 WGVVIVDDTEKVW 144 (282)
Q Consensus 132 ~~vvivDd~~~~~ 144 (282)
+++++|||++.-.
T Consensus 159 ~~~l~vgD~~~di 171 (199)
T PRK09456 159 ADAVFFDDNADNI 171 (199)
T ss_pred hHeEEeCCCHHHH
Confidence 9999999998543
No 83
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=95.79 E-value=0.011 Score=51.65 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=61.0
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
+...||+.++|+.+.+ .+.+.|-|++.+.++...++.+.-. .+| +.+++.++... .+.+-+++++-++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f--d~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHL--DLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHC--CEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 6788999999999976 5899999999999999998886533 357 55666655432 123344555668899
Q ss_pred eEEEcCChhhh
Q 041003 134 VVIVDDTEKVW 144 (282)
Q Consensus 134 vvivDd~~~~~ 144 (282)
+++|+|++.-.
T Consensus 169 ~l~igDs~~di 179 (224)
T PRK14988 169 TLFIDDSEPIL 179 (224)
T ss_pred EEEEcCCHHHH
Confidence 99999998544
No 84
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=95.68 E-value=0.019 Score=54.30 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=64.6
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
+...||+.+||+.+.+ .+.+.|-|++.+.+++.+++.++-.. +| +.+++.+++.. .+.+-++.++-+.++
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yF--d~Iv~sddv~~~KP~Peifl~A~~~lgl~Pee 291 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FF--SVIVAAEDVYRGKPDPEMFIYAAQLLNFIPER 291 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-Hc--eEEEecCcCCCCCCCHHHHHHHHHHcCCCccc
Confidence 4578999999999965 59999999999999999999986544 67 77888887642 234455556668899
Q ss_pred eEEEcCChhhhh
Q 041003 134 VVIVDDTEKVWK 145 (282)
Q Consensus 134 vvivDd~~~~~~ 145 (282)
+++|+|+..-..
T Consensus 292 cl~IGDS~~DIe 303 (381)
T PLN02575 292 CIVFGNSNQTVE 303 (381)
T ss_pred EEEEcCCHHHHH
Confidence 999999884443
No 85
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=95.64 E-value=0.012 Score=49.40 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV 134 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v 134 (282)
+..-|++ +.|+.+.+.+.+.|-|++.+.+++.+++.+.-.+ +| +.+++.++... .+..-+++++.+.+.+
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~f--d~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 162 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YF--DAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQC 162 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-Hc--eEEEehhhccCCCCChHHHHHHHHHcCCCHHHe
Confidence 3456764 8899998779999999999999999999986443 67 67888887642 1233444455577899
Q ss_pred EEEcCChhhhh
Q 041003 135 VIVDDTEKVWK 145 (282)
Q Consensus 135 vivDd~~~~~~ 145 (282)
|+|+|++.-..
T Consensus 163 l~igDs~~di~ 173 (188)
T PRK10725 163 VVFEDADFGIQ 173 (188)
T ss_pred EEEeccHhhHH
Confidence 99999975443
No 86
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=95.61 E-value=0.015 Score=50.39 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=62.1
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
....||+.++|+.+.+ .+.++|.|++.+..++.+++.+.-.+ +| +.+++.++... .+..-++.++-++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 167 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YF--DALASAEKLPYSKPHPEVYLNCAAKLGVDPLT 167 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cc--cEEEEcccCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 5678999999999974 59999999999999999999876444 57 66777766432 122333445557889
Q ss_pred eEEEcCChhhhh
Q 041003 134 VVIVDDTEKVWK 145 (282)
Q Consensus 134 vvivDd~~~~~~ 145 (282)
+++|+|+..-..
T Consensus 168 ~~~igDs~~Di~ 179 (222)
T PRK10826 168 CVALEDSFNGMI 179 (222)
T ss_pred eEEEcCChhhHH
Confidence 999999985443
No 87
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=95.61 E-value=0.023 Score=49.57 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=61.1
Q ss_pred EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
.+...||+.++|+.+.+ .+.+.|-|++...++..+++.++-.. +| +.+++.+++.. .+.+-+++++-+.+
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~ 169 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RC--AVLIGGDTLAERKPHPLPLLVAAERIGVAPT 169 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cc--cEEEecCcCCCCCCCHHHHHHHHHHhCCChh
Confidence 46789999999999975 48999999999999999998876443 56 55666665432 13344455666789
Q ss_pred ceEEEcCChhh
Q 041003 133 GVVIVDDTEKV 143 (282)
Q Consensus 133 ~vvivDd~~~~ 143 (282)
++++|+|++.-
T Consensus 170 ~~l~IGDs~~D 180 (229)
T PRK13226 170 DCVYVGDDERD 180 (229)
T ss_pred hEEEeCCCHHH
Confidence 99999999743
No 88
>PRK11587 putative phosphatase; Provisional
Probab=95.59 E-value=0.022 Score=49.25 Aligned_cols=80 Identities=14% Similarity=-0.023 Sum_probs=58.7
Q ss_pred EEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
.+...||+.++|+.+. +.+.+.|-|+++..++..+++...-. +| ..+++.++... .+.+-+..++-.++
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~--~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~ 156 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--AP--EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQ 156 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--Cc--cEEEEHHHhcCCCCCcHHHHHHHHHcCCCcc
Confidence 3678999999999996 56999999999999887777665432 34 44666665432 23444555666789
Q ss_pred ceEEEcCChhh
Q 041003 133 GVVIVDDTEKV 143 (282)
Q Consensus 133 ~vvivDd~~~~ 143 (282)
++++|+|++.-
T Consensus 157 ~~l~igDs~~d 167 (218)
T PRK11587 157 ECVVVEDAPAG 167 (218)
T ss_pred cEEEEecchhh
Confidence 99999999843
No 89
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=95.58 E-value=0.01 Score=51.24 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=59.5
Q ss_pred EEEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 60 LVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
.+...||+.++|+.+. +.+.|.|++.+.+++.+++..+-.. +| ...+++.++... .+..-+++++-+.++
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F-~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 161 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YF-PDKLFSGYDIQRWKPDPALMFHAAEAMNVNVEN 161 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hC-cceEeeHHhcCCCCCChHHHHHHHHHcCCCHHH
Confidence 3677899999999994 8999999999999999988775443 46 344666655432 223344445557789
Q ss_pred eEEEcCChhhhh
Q 041003 134 VVIVDDTEKVWK 145 (282)
Q Consensus 134 vvivDd~~~~~~ 145 (282)
+++|+|++.-..
T Consensus 162 ~l~igDs~~di~ 173 (221)
T PRK10563 162 CILVDDSSAGAQ 173 (221)
T ss_pred eEEEeCcHhhHH
Confidence 999999985443
No 90
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.57 E-value=0.02 Score=50.51 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=51.0
Q ss_pred chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEE
Q 041003 5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLC 83 (282)
Q Consensus 5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~ 83 (282)
.|+.+-+ .+++|+||||++... .-||+.++|+++.+ .+.+++.
T Consensus 3 ~~~~~~~-~~~~D~dG~l~~~~~-----------------------------------~~pga~e~L~~L~~~G~~~~iv 46 (242)
T TIGR01459 3 DLINDYD-VFLLDLWGVIIDGNH-----------------------------------TYPGAVQNLNKIIAQGKPVYFV 46 (242)
T ss_pred hhhhcCC-EEEEecccccccCCc-----------------------------------cCccHHHHHHHHHHCCCEEEEE
Confidence 3554444 678999999986532 35899999999975 5899999
Q ss_pred cCCcHHHHH--HHHhhhcCCCcccccccEEEcc
Q 041003 84 TTRIRSYAM--MMAKLLNPKCEYHISSRLITRE 114 (282)
Q Consensus 84 T~~~~~Ya~--~v~~~ldp~~~~f~~~rv~~r~ 114 (282)
|++++..++ +.++.++-....| +.|++.+
T Consensus 47 TN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~ 77 (242)
T TIGR01459 47 SNSPRNIFSLHKTLKSLGINADLP--EMIISSG 77 (242)
T ss_pred eCCCCChHHHHHHHHHCCCCcccc--ceEEccH
Confidence 999988776 6667666543134 4455544
No 91
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=95.55 E-value=0.034 Score=44.38 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=35.6
Q ss_pred ecccHHHHHHHH-hcCceEEEEcCCcHHHHH------------HHHhhhcCCCcccccccEEEc
Q 041003 63 VRSYIRKFLKKA-SKMYDIYLCTTRIRSYAM------------MMAKLLNPKCEYHISSRLITR 113 (282)
Q Consensus 63 ~RP~l~~FL~~~-~~~yei~i~T~~~~~Ya~------------~v~~~ldp~~~~f~~~rv~~r 113 (282)
..|.+.+.|+++ .+-+++++.|+-...... .+.+.|+..+.-| +.++-|
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY--d~l~~~ 86 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY--DEIYVG 86 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC--ceEEeC
Confidence 678888999988 567999999988777766 6777777665433 444433
No 92
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=95.53 E-value=0.023 Score=48.89 Aligned_cols=79 Identities=14% Similarity=-0.005 Sum_probs=60.0
Q ss_pred EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCC-CcccccccEEEccCCC--C----Cceecccccccc-C
Q 041003 61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPK-CEYHISSRLITREDFK--E----KGKKSGDLVLRQ-E 131 (282)
Q Consensus 61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~-~~~f~~~rv~~r~~~~--~----~~~KdL~~l~~~-~ 131 (282)
..+.||+.++|+.+. +.+.+.|-|++.+.++..+++.++-. +.+| +.+++.++-. + .+.+-+++++.. +
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f--~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 163 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDV--DAVVCPSDVAAGRPAPDLILRAMELTGVQDV 163 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccC--CEEEcCCcCCCCCCCHHHHHHHHHHcCCCCh
Confidence 579999999999996 56999999999999999999998754 2577 5667666532 1 122334445544 6
Q ss_pred CceEEEcCCh
Q 041003 132 WGVVIVDDTE 141 (282)
Q Consensus 132 ~~vvivDd~~ 141 (282)
+++++|+|++
T Consensus 164 ~~~~~igD~~ 173 (220)
T TIGR03351 164 QSVAVAGDTP 173 (220)
T ss_pred hHeEEeCCCH
Confidence 8999999997
No 93
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=95.47 E-value=0.053 Score=45.44 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=65.7
Q ss_pred hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCc-e--EEE
Q 041003 6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMY-D--IYL 82 (282)
Q Consensus 6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~y-e--i~i 82 (282)
|-+.+=..||+|+|+||..-... ..-|.+.+.++++.+.| + |.|
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~---------------------------------~i~~~~~~~~~~l~~~~~~~~v~I 82 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYED---------------------------------EIPPEYAEWLNELKKQFGKDRVLI 82 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcC---------------------------------cCCHHHHHHHHHHHHHCCCCeEEE
Confidence 67778889999999999754321 14466788888888765 3 999
Q ss_pred EcCC-------cHHHHHHHHhhhcCCCcccccccEEEccCCCCC-ceecccccc------ccCCceEEEcCCh--hhhhh
Q 041003 83 CTTR-------IRSYAMMMAKLLNPKCEYHISSRLITREDFKEK-GKKSGDLVL------RQEWGVVIVDDTE--KVWKD 146 (282)
Q Consensus 83 ~T~~-------~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~-~~KdL~~l~------~~~~~vvivDd~~--~~~~~ 146 (282)
+|++ ...-|+.+-+.|.-. +| |..+.++ ..+++.+.+ ...+++++|.|+- ++...
T Consensus 83 vSNsaGs~~d~~~~~a~~~~~~lgIp--vl-------~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~g 153 (168)
T PF09419_consen 83 VSNSAGSSDDPDGERAEALEKALGIP--VL-------RHRAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMG 153 (168)
T ss_pred EECCCCcccCccHHHHHHHHHhhCCc--EE-------EeCCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHh
Confidence 9998 367777787777633 12 2223221 122332222 2488999999996 66665
Q ss_pred C
Q 041003 147 H 147 (282)
Q Consensus 147 ~ 147 (282)
+
T Consensus 154 N 154 (168)
T PF09419_consen 154 N 154 (168)
T ss_pred h
Confidence 5
No 94
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.37 E-value=0.04 Score=42.07 Aligned_cols=35 Identities=14% Similarity=-0.055 Sum_probs=25.5
Q ss_pred cccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhh
Q 041003 64 RSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLL 98 (282)
Q Consensus 64 RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~l 98 (282)
=||..+|++.+.+. ..+++.||++..-...+++.|
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 38999999999765 899999999855555555554
No 95
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=95.23 E-value=0.043 Score=49.65 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=62.6
Q ss_pred EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhc---CCCcccccccEEEccCCC--C-------Ccee--cc
Q 041003 60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLN---PKCEYHISSRLITREDFK--E-------KGKK--SG 124 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ld---p~~~~f~~~rv~~r~~~~--~-------~~~K--dL 124 (282)
-+.+|||+.+|++.+.+ ...++|+|+|...+++.+++.+. |...++ ++++...++.. + ..-| ++
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~Iv-SN~L~f~~dGvltG~~~P~i~~~~K~~~v 197 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVV-SNFMDFDEDGVLKGFKGPLIHTFNKNHDV 197 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEE-eeeEEECCCCeEeCCCCCcccccccHHHH
Confidence 47899999999999965 58999999999999999999743 343454 45544332211 1 1112 11
Q ss_pred c-----ccc--ccCCceEEEcCCh-hhhh----hCccCeeeH
Q 041003 125 D-----LVL--RQEWGVVIVDDTE-KVWK----DHKEHLMLL 154 (282)
Q Consensus 125 ~-----~l~--~~~~~vvivDd~~-~~~~----~~~~N~i~i 154 (282)
. .++ .+.+++|+|.|.. +..+ .+.+|.|.|
T Consensus 198 ~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i 239 (277)
T TIGR01544 198 ALRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI 239 (277)
T ss_pred HHHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE
Confidence 1 122 3567899999997 3333 245688888
No 96
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=95.07 E-value=0.019 Score=47.79 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=56.2
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
+...||+.++|+.+.+ .+.++|-|++ .++..+++.++-.+ +| +.+++.++... .+.+-++.++.+.++
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f--~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YF--DAIVDADEVKEGKPHPETFLLAAELLGVSPNE 161 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HC--CEeeehhhCCCCCCChHHHHHHHHHcCCCHHH
Confidence 6789999999999975 5899999988 77888888765433 56 45666655432 122334445557789
Q ss_pred eEEEcCChhhh
Q 041003 134 VVIVDDTEKVW 144 (282)
Q Consensus 134 vvivDd~~~~~ 144 (282)
+++|+|++.-.
T Consensus 162 ~v~IgD~~~di 172 (185)
T TIGR02009 162 CVVFEDALAGV 172 (185)
T ss_pred eEEEeCcHhhH
Confidence 99999997433
No 97
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=95.03 E-value=0.04 Score=49.60 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=58.6
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCC------ceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEK------GKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~------~~KdL~~l~~~~~~ 133 (282)
+..+||+.++|+.+.+ .+.++|.|++...++..+++.++-. .+| +.+++.+++... +.+-+++++-+.++
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f--~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~ 176 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG-RYF--RWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQ 176 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH-hhC--eEEEecCCCCCCCCCcHHHHHHHHHhCCChhH
Confidence 5679999999999964 6999999999999999999887543 356 567776655321 11222334447889
Q ss_pred eEEEcCChh
Q 041003 134 VVIVDDTEK 142 (282)
Q Consensus 134 vvivDd~~~ 142 (282)
+++|+|++.
T Consensus 177 ~l~IGD~~~ 185 (272)
T PRK13223 177 SLFVGDSRS 185 (272)
T ss_pred EEEECCCHH
Confidence 999999974
No 98
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=94.98 E-value=0.04 Score=46.81 Aligned_cols=77 Identities=12% Similarity=-0.030 Sum_probs=54.6
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
+...||+.++|+.+.+ .+.++|.|++.+.. ..+++.++-. .+| +.++..+++.. .+.+-++.++-++++
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~ 179 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLL-EYF--DFVVTSYEVGAEKPDPKIFQEALERAGISPEE 179 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcH-Hhc--ceEEeecccCCCCCCHHHHHHHHHHcCCChhH
Confidence 3678999999999986 49999999998764 6666665432 356 56666655432 123344455567899
Q ss_pred eEEEcCCh
Q 041003 134 VVIVDDTE 141 (282)
Q Consensus 134 vvivDd~~ 141 (282)
+++|+|+.
T Consensus 180 ~~~IgD~~ 187 (203)
T TIGR02252 180 ALHIGDSL 187 (203)
T ss_pred EEEECCCc
Confidence 99999986
No 99
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=94.92 E-value=0.065 Score=46.40 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=35.1
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhh
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLL 98 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~l 98 (282)
+.++||+.+||+.+.+ .+.++|.|+|.+.|++++++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 6799999999999975 5999999999999999999886
No 100
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.75 E-value=0.05 Score=47.60 Aligned_cols=83 Identities=6% Similarity=-0.074 Sum_probs=57.1
Q ss_pred EEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCC--CcccccccEEEccCCCC----CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPK--CEYHISSRLITREDFKE----KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~--~~~f~~~rv~~r~~~~~----~~~KdL~~l~~~~~ 132 (282)
...+.||+.++|+++. +.+.++|+|+++..+...+.+..+-. ..+| +.++....+.+ .+.+-++.++-+++
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f--~~~fd~~~g~KP~p~~y~~i~~~lgv~p~ 170 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYF--SGYFDTTVGLKTEAQSYVKIAGQLGSPPR 170 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhc--ceEEEeCcccCCCHHHHHHHHHHhCcChh
Confidence 3568999999999996 56999999999999999888775311 1245 23343222222 23444555666789
Q ss_pred ceEEEcCChhhh
Q 041003 133 GVVIVDDTEKVW 144 (282)
Q Consensus 133 ~vvivDd~~~~~ 144 (282)
++++|+|++.-.
T Consensus 171 e~lfVgDs~~Di 182 (220)
T TIGR01691 171 EILFLSDIINEL 182 (220)
T ss_pred HEEEEeCCHHHH
Confidence 999999997433
No 101
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=94.74 E-value=0.067 Score=45.39 Aligned_cols=77 Identities=14% Similarity=0.013 Sum_probs=56.9
Q ss_pred EecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-----CceeccccccccCCceE
Q 041003 62 KVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGDLVLRQEWGVV 135 (282)
Q Consensus 62 ~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-----~~~KdL~~l~~~~~~vv 135 (282)
+..|+..++|+.+.+ -+.+.|.|++.+.++..+++.+.-. .+| +.+++.++... .+.+-++.++-+.++++
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f--~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i 182 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILF--PVQIWMEDCPPKPNPEPLILAAKALGVEACHAA 182 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhC--CEEEeecCCCCCcCHHHHHHHHHHhCcCcccEE
Confidence 345566999999975 4999999999999999999998654 367 56677666432 12333344555778999
Q ss_pred EEcCCh
Q 041003 136 IVDDTE 141 (282)
Q Consensus 136 ivDd~~ 141 (282)
+|+|++
T Consensus 183 ~vGD~~ 188 (197)
T TIGR01548 183 MVGDTV 188 (197)
T ss_pred EEeCCH
Confidence 999987
No 102
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=94.72 E-value=0.036 Score=50.34 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=58.3
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
+.+.||+.++|+.+.+ .+.++|-|++.+.++..+++.+.-. .+|..-.+++.+++.. .+.+-++.++-+.++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccc-cccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 5789999999999975 6999999999999999998876211 1230112345555432 123334455557889
Q ss_pred eEEEcCChhhhh
Q 041003 134 VVIVDDTEKVWK 145 (282)
Q Consensus 134 vvivDd~~~~~~ 145 (282)
+++|+|++.-..
T Consensus 222 ~l~IGDs~~Di~ 233 (286)
T PLN02779 222 CVVVEDSVIGLQ 233 (286)
T ss_pred EEEEeCCHHhHH
Confidence 999999985554
No 103
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=94.65 E-value=0.079 Score=45.73 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=39.4
Q ss_pred EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCccc
Q 041003 60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYH 105 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f 105 (282)
.+.+|||+.+||+.+.+ ...++|.|+|.+.|++++++.+.+...++
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~ 114 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIY 114 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEE
Confidence 47899999999999976 59999999999999999999885544344
No 104
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=94.57 E-value=0.11 Score=42.56 Aligned_cols=98 Identities=17% Similarity=0.067 Sum_probs=59.3
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHHH
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYA 91 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya 91 (282)
.+++|+||||+-.... .... +...-++.++|+. -++++.+ .+.++|-|+..+..+
T Consensus 3 ~~~~D~Dgtl~~~~~~--~~~~--------------------~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~ 58 (154)
T TIGR01670 3 LLILDVDGVLTDGKIY--YTNN--------------------GEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLV 58 (154)
T ss_pred EEEEeCceeEEcCeEE--ECCC--------------------CcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHH
Confidence 5789999999954221 0000 0111234677776 6788864 699999999999999
Q ss_pred HHHHhhhcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcCCh
Q 041003 92 MMMAKLLNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 92 ~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd~~ 141 (282)
..+++.+.-.. +| .. ..... ...+=++.++-+.+.+++|-|+.
T Consensus 59 ~~~l~~~gi~~-~~-~~-----~~~k~~~~~~~~~~~~~~~~~~~~vGDs~ 102 (154)
T TIGR01670 59 EDRCKTLGITH-LY-QG-----QSNKLIAFSDILEKLALAPENVAYIGDDL 102 (154)
T ss_pred HHHHHHcCCCE-EE-ec-----ccchHHHHHHHHHHcCCCHHHEEEECCCH
Confidence 99998886543 34 11 11100 11112223334667888888876
No 105
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=94.31 E-value=0.029 Score=47.98 Aligned_cols=82 Identities=9% Similarity=-0.125 Sum_probs=53.4
Q ss_pred EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHH--HHHhhhcCCCcccccccEEEccCCCC------Cceecccccccc
Q 041003 60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAM--MMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQ 130 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~--~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~ 130 (282)
.+.+.||+.++|+.+.+ .+.++|.|++...+.. .....++ -..+| +.+++.++... .+.+-+++++-+
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~-l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~g~~ 168 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGD-IMALF--DAVVESCLEGLRKPDPRIYQLMLERLGVA 168 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhh-hHhhC--CEEEEeeecCCCCCCHHHHHHHHHHcCCC
Confidence 46689999999999975 5999999998765522 2222111 12356 55665554431 233444556667
Q ss_pred CCceEEEcCChhhh
Q 041003 131 EWGVVIVDDTEKVW 144 (282)
Q Consensus 131 ~~~vvivDd~~~~~ 144 (282)
++.+++|||++.-.
T Consensus 169 ~~~~l~i~D~~~di 182 (211)
T TIGR02247 169 PEECVFLDDLGSNL 182 (211)
T ss_pred HHHeEEEcCCHHHH
Confidence 88999999997544
No 106
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.30 E-value=0.09 Score=47.13 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=44.7
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHH
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRS 89 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~ 89 (282)
...+++||||||+.+... ..|...+.|+.+.+. ..++|.|.-...
T Consensus 4 ~kli~~DlDGTLl~~~~~----------------------------------~~~~~~~ai~~l~~~Gi~~~iaTgR~~~ 49 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTY----------------------------------SYEPAKPALKALKEKGIPVIPCTSKTAA 49 (273)
T ss_pred ceEEEEcCcccCcCCCCc----------------------------------CcHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 458899999999975321 235677888888765 899999999999
Q ss_pred HHHHHHhhhcCC
Q 041003 90 YAMMMAKLLNPK 101 (282)
Q Consensus 90 Ya~~v~~~ldp~ 101 (282)
.+..+++.++..
T Consensus 50 ~~~~~~~~l~l~ 61 (273)
T PRK00192 50 EVEVLRKELGLE 61 (273)
T ss_pred HHHHHHHHcCCC
Confidence 999999988643
No 107
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=93.93 E-value=0.09 Score=47.48 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=56.3
Q ss_pred EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEE
Q 041003 61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVI 136 (282)
Q Consensus 61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvi 136 (282)
+...||+.++|+.+. +.+.+.|.|++.+.++..+++.++-.. +| +.+++.+.... .+.+-+++++-+.+++++
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F--~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~ 217 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LF--SVVQAGTPILSKRRALSQLVAREGWQPAAVMY 217 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-he--EEEEecCCCCCCHHHHHHHHHHhCcChhHEEE
Confidence 566899999999997 458999999999999999999987544 56 44555443221 111122233346688999
Q ss_pred EcCChh
Q 041003 137 VDDTEK 142 (282)
Q Consensus 137 vDd~~~ 142 (282)
|+|++.
T Consensus 218 IGDs~~ 223 (273)
T PRK13225 218 VGDETR 223 (273)
T ss_pred ECCCHH
Confidence 999973
No 108
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=93.87 E-value=0.044 Score=47.81 Aligned_cols=81 Identities=14% Similarity=0.070 Sum_probs=64.5
Q ss_pred EEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003 60 LVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW 132 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~ 132 (282)
-++..||+.+||+.+... .-+.+-|++.+.-+..+++.+.-.. +| .-++++++... .|.+-.++|+-+++
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f--~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~ 160 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YF--DVIVTADDVARGKPAPDIYLLAAERLGVDPE 160 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hc--chhccHHHHhcCCCCCHHHHHHHHHcCCChH
Confidence 368999999999999876 9999999999999999998887555 46 33455655432 35667777888999
Q ss_pred ceEEEcCChhh
Q 041003 133 GVVIVDDTEKV 143 (282)
Q Consensus 133 ~vvivDd~~~~ 143 (282)
++|+|+|++.-
T Consensus 161 ~CvviEDs~~G 171 (221)
T COG0637 161 ECVVVEDSPAG 171 (221)
T ss_pred HeEEEecchhH
Confidence 99999999843
No 109
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=93.70 E-value=0.047 Score=47.45 Aligned_cols=42 Identities=5% Similarity=0.041 Sum_probs=38.8
Q ss_pred EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003 61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKC 102 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~ 102 (282)
+.++||..+.++.+.+. +.++|.|.|...++++|.+.+.-+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 88999999999999765 9999999999999999999997665
No 110
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=93.68 E-value=0.019 Score=47.49 Aligned_cols=72 Identities=11% Similarity=-0.029 Sum_probs=54.9
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV 134 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v 134 (282)
+..+||+.++|+. +.|.|++.+.+...+++.+.-. .+| +.+++.++... .+.+-+++++-+++.+
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~f--d~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~ 159 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYF--DRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV 159 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHH--hhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence 5689999999993 7899999999999999987543 357 55777776432 2344455566688999
Q ss_pred EEEcCCh
Q 041003 135 VIVDDTE 141 (282)
Q Consensus 135 vivDd~~ 141 (282)
++|+|++
T Consensus 160 l~vgD~~ 166 (175)
T TIGR01493 160 LMVAAHQ 166 (175)
T ss_pred EeEecCh
Confidence 9999996
No 111
>PLN02811 hydrolase
Probab=93.54 E-value=0.073 Score=46.08 Aligned_cols=82 Identities=7% Similarity=0.005 Sum_probs=55.2
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHH-HhhhcCCCcccccccEEEcc--CCCC------Cceecccccc--
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMM-AKLLNPKCEYHISSRLITRE--DFKE------KGKKSGDLVL-- 128 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v-~~~ldp~~~~f~~~rv~~r~--~~~~------~~~KdL~~l~-- 128 (282)
+.+.||+.++|+.+.+ .+.+.|-|++.+.+.... .+...- ..+| +.+++.+ ++.. .+.+-+++++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l-~~~f--~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~ 153 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGEL-FSLM--HHVVTGDDPEVKQGKPAPDIFLAAARRFEDG 153 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHH-HhhC--CEEEECChhhccCCCCCcHHHHHHHHHhCCC
Confidence 5678999999999975 599999999998766543 222111 1256 5677777 5432 2344445554
Q ss_pred -ccCCceEEEcCChhhhh
Q 041003 129 -RQEWGVVIVDDTEKVWK 145 (282)
Q Consensus 129 -~~~~~vvivDd~~~~~~ 145 (282)
-..+.+++|+|+..-..
T Consensus 154 ~~~~~~~v~IgDs~~di~ 171 (220)
T PLN02811 154 PVDPGKVLVFEDAPSGVE 171 (220)
T ss_pred CCCccceEEEeccHhhHH
Confidence 46789999999984443
No 112
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=93.45 E-value=0.025 Score=56.23 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=71.3
Q ss_pred cccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecH
Q 041003 182 RCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHP 261 (282)
Q Consensus 182 r~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~ 261 (282)
+..-...|..+|.||.++|-|+ +. .+.+.+.+..+.-||.+.. =...+||||+.+ ..++---.+.....++|.-
T Consensus 200 ~~f~d~hrl~~feg~~~~f~gF-~~--ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e--~~~~~~p~~~s~~~~~vk~ 273 (850)
T KOG3524|consen 200 PCFVDKHRLGVFEGLSLFFHGF-KQ--EEIDDMLRSLENTGGKLAP-SDTLCTHVVVNE--DNDEVEPLAVSSNQVHVKK 273 (850)
T ss_pred cchhhhhccccccCCeEeecCC-cH--HHHHHHHHHHHhcCCcccC-CCCCceeEeecC--Cccccccccccccceeecc
Confidence 4455667888999999999997 32 2467788899999999998 567899999993 2222222345556789999
Q ss_pred HHHHHHHHhCCcCCCCCCC
Q 041003 262 QWIYAAYYLWSRQVEKDYF 280 (282)
Q Consensus 262 ~WL~~c~~~~~r~~E~~y~ 280 (282)
+|.+-++..+.+.-|..|.
T Consensus 274 ewfw~siq~g~~a~e~~yl 292 (850)
T KOG3524|consen 274 EWFWVSIQRGCCAIEDNYL 292 (850)
T ss_pred cceEEEEecchhcccccee
Confidence 9999888888888888774
No 113
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=93.39 E-value=0.16 Score=43.65 Aligned_cols=52 Identities=25% Similarity=0.185 Sum_probs=39.7
Q ss_pred EEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcHHHHH
Q 041003 14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAM 92 (282)
Q Consensus 14 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~ 92 (282)
+++||||||+++... .-|...+.|+++. +-..+++.|.-....+.
T Consensus 1 i~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~ 46 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK----------------------------------ISPETIEALKELQEKGIKLVIATGRSYSSIK 46 (254)
T ss_dssp EEEECCTTTCSTTSS----------------------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHH
T ss_pred cEEEECCceecCCCe----------------------------------eCHHHHHHHHhhcccceEEEEEccCcccccc
Confidence 689999999995432 2245567777775 67889999999888888
Q ss_pred HHHhhhc
Q 041003 93 MMAKLLN 99 (282)
Q Consensus 93 ~v~~~ld 99 (282)
.+++.+.
T Consensus 47 ~~~~~~~ 53 (254)
T PF08282_consen 47 RLLKELG 53 (254)
T ss_dssp HHHHHTT
T ss_pred ccccccc
Confidence 8888664
No 114
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=93.28 E-value=0.091 Score=43.66 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=53.4
Q ss_pred EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003 61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG 133 (282)
Q Consensus 61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~ 133 (282)
..+.||+.++|+.+. ..+.+.|-|++. .+..+++.++-. .+| +.+++.++-.. .+.+-+++++-+.++
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~ 160 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYF--DAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSE 160 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhC--cEEEehhhcCCCCCChHHHHHHHHHcCCCHHH
Confidence 367899999999996 458999999864 356677776543 356 55665554321 123344445557789
Q ss_pred eEEEcCChhhh
Q 041003 134 VVIVDDTEKVW 144 (282)
Q Consensus 134 vvivDd~~~~~ 144 (282)
+|+|+|++.-.
T Consensus 161 ~v~vgD~~~di 171 (185)
T TIGR01990 161 CIGIEDAQAGI 171 (185)
T ss_pred eEEEecCHHHH
Confidence 99999997433
No 115
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=93.15 E-value=0.14 Score=43.13 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=54.4
Q ss_pred EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC---C------cee--cc----
Q 041003 61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE---K------GKK--SG---- 124 (282)
Q Consensus 61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~------~~K--dL---- 124 (282)
+..+||+.++|+.+. +-+.++|.|++...+++.+++.+.... +| .+.+.+.+.... . .-| -+
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~-~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~ 156 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VY-SNELVFDEKGFIQPDGIVRVTFDNKGEAVERLK 156 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EE-EEEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence 568999999999996 469999999999999999999987543 45 444443322110 0 001 11
Q ss_pred ccccccCCceEEEcCCh
Q 041003 125 DLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 125 ~~l~~~~~~vvivDd~~ 141 (282)
+.++.+.+++++|.|+.
T Consensus 157 ~~~~~~~~~~i~iGDs~ 173 (201)
T TIGR01491 157 RELNPSLTETVAVGDSK 173 (201)
T ss_pred HHhCCCHHHEEEEcCCH
Confidence 22333577899999987
No 116
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=93.10 E-value=0.24 Score=43.96 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=47.4
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHH-hcCceEEEEcCCcHH
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKA-SKMYDIYLCTTRIRS 89 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~-~~~yei~i~T~~~~~ 89 (282)
...+++||||||+.+... ..|...+.|+++ ++-..++|-|.....
T Consensus 3 ~kli~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~~~~~g~~v~iaTGR~~~ 48 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT----------------------------------ISPETKEALARLREKGVKVVLATGRPLP 48 (264)
T ss_pred eeEEEEcCCCCccCCCCc----------------------------------cCHHHHHHHHHHHHCCCEEEEECCCChH
Confidence 567899999999988542 456677888877 577899999999999
Q ss_pred HHHHHHhhhcCCC
Q 041003 90 YAMMMAKLLNPKC 102 (282)
Q Consensus 90 Ya~~v~~~ldp~~ 102 (282)
.+.++++.|...+
T Consensus 49 ~~~~~~~~l~~~~ 61 (264)
T COG0561 49 DVLSILEELGLDG 61 (264)
T ss_pred HHHHHHHHcCCCc
Confidence 9999999988775
No 117
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=93.06 E-value=0.19 Score=41.73 Aligned_cols=40 Identities=5% Similarity=0.045 Sum_probs=36.0
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcC
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNP 100 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp 100 (282)
+.++||+.++|+.+.+ .+.++|.|++...+++.+++.++-
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l 111 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGE 111 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 6899999999999965 599999999999999999988753
No 118
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=92.97 E-value=0.047 Score=50.52 Aligned_cols=41 Identities=7% Similarity=0.132 Sum_probs=36.1
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCC
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPK 101 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~ 101 (282)
+.++||+.++|+.+.+ -+.+.|.|+|...+++.+.+.++-.
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld 221 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD 221 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC
Confidence 6689999999999975 4899999999999999999887543
No 119
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=92.80 E-value=0.22 Score=45.92 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=36.4
Q ss_pred eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-----CceEEEEcCC
Q 041003 12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-----MYDIYLCTTR 86 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-----~yei~i~T~~ 86 (282)
+.+++|+||||+++.. .-||..++++.+.. ...+.+.|++
T Consensus 1 ~~~ifD~DGvL~~g~~-----------------------------------~i~ga~eal~~L~~~~~~~g~~~~flTNn 45 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK-----------------------------------PIAGASDALRRLNRNQGQLKIPYIFLTNG 45 (321)
T ss_pred CEEEEeCcCceECCcc-----------------------------------ccHHHHHHHHHHhccccccCCCEEEEecC
Confidence 4689999999998743 23677777877765 5677777776
Q ss_pred c----HHHHHHHHhhh
Q 041003 87 I----RSYAMMMAKLL 98 (282)
Q Consensus 87 ~----~~Ya~~v~~~l 98 (282)
. +.+|+.+.+.+
T Consensus 46 ~g~s~~~~~~~l~~~l 61 (321)
T TIGR01456 46 GGFSERARAEEISSLL 61 (321)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 4 55666664443
No 120
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=92.75 E-value=0.23 Score=43.44 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=26.2
Q ss_pred ccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcC
Q 041003 65 SYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNP 100 (282)
Q Consensus 65 P~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp 100 (282)
|...++|+++.+. ..+++.|.-++.-+..+++.+..
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 3467788887654 78888888877777777777753
No 121
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.74 E-value=0.18 Score=53.92 Aligned_cols=81 Identities=6% Similarity=-0.004 Sum_probs=63.0
Q ss_pred ecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCceE
Q 041003 63 VRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGVV 135 (282)
Q Consensus 63 ~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~vv 135 (282)
..||+.++|++|. +-+.+.|.|++.+.+++.+++.+.-...+| +.+++.+++.. .+.+-+++++-+.++++
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~F--d~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v 239 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMF--DAIVSADAFENLKPAPDIFLAAAKILGVPTSECV 239 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHC--CEEEECcccccCCCCHHHHHHHHHHcCcCcccEE
Confidence 5799999999996 469999999999999999999886544467 67787777652 23444555666788999
Q ss_pred EEcCChhhhh
Q 041003 136 IVDDTEKVWK 145 (282)
Q Consensus 136 ivDd~~~~~~ 145 (282)
+|+|++.-..
T Consensus 240 ~IgDs~~Di~ 249 (1057)
T PLN02919 240 VIEDALAGVQ 249 (1057)
T ss_pred EEcCCHHHHH
Confidence 9999984443
No 122
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=92.62 E-value=0.2 Score=42.48 Aligned_cols=45 Identities=9% Similarity=0.083 Sum_probs=38.3
Q ss_pred EEEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCccc
Q 041003 60 LVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYH 105 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f 105 (282)
.+..+||+.+||+.+.+.+.++|.|++.+.+++.+++.++-.. +|
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f 110 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LF 110 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hh
Confidence 3567899999999998669999999999999999999886442 45
No 123
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=92.50 E-value=0.26 Score=46.32 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=63.1
Q ss_pred eecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003 192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY 269 (282)
Q Consensus 192 vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~ 269 (282)
.-.|..|+|+|-+..+ +..|...+...|-.++..++..+.=|||......+.|..+|...||++++-.=...++.
T Consensus 294 lv~Gm~v~~~~e~~~~---~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 294 LVAGMEVVVAPEITMD---PDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred cccCcEEEEeCCccCC---HHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 4579999999976654 78899999999999999999999999998545678899999999999998766555544
No 124
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.32 E-value=0.27 Score=42.36 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCC
Q 041003 67 IRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPK 101 (282)
Q Consensus 67 l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~ 101 (282)
..+.|+.+.+ ...+++.|......+.++++.+.-.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 5677888765 4799999999999999999988643
No 125
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=92.21 E-value=0.23 Score=48.03 Aligned_cols=77 Identities=9% Similarity=0.121 Sum_probs=56.7
Q ss_pred EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-----CceeccccccccCCce
Q 041003 61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGDLVLRQEWGV 134 (282)
Q Consensus 61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-----~~~KdL~~l~~~~~~v 134 (282)
+.+.||+.++|+.+. +.+.+.|.|++.+.++..+++.++-.. +| +.+++.++... .+.+-++.+ +++.+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f--~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~ 403 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WV--TETFSIEQINSLNKSDLVKSILNKY--DIKEA 403 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hc--ceeEecCCCCCCCCcHHHHHHHHhc--CcceE
Confidence 567899999999996 569999999999999999999876544 57 55677665421 111222222 45789
Q ss_pred EEEcCChh
Q 041003 135 VIVDDTEK 142 (282)
Q Consensus 135 vivDd~~~ 142 (282)
++|.|++.
T Consensus 404 v~VGDs~~ 411 (459)
T PRK06698 404 AVVGDRLS 411 (459)
T ss_pred EEEeCCHH
Confidence 99999983
No 126
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=92.14 E-value=0.69 Score=40.75 Aligned_cols=119 Identities=14% Similarity=-0.065 Sum_probs=69.2
Q ss_pred cCCCeeEEEeCCCceeeeeccCcc---c-----h-hhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cC
Q 041003 8 RQKKLHLVLDLDQTLPHAVDIDIL---A-----S-KDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KM 77 (282)
Q Consensus 8 ~~~kl~LVLDLD~TLihs~~~~~~---~-----~-~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~ 77 (282)
..+|..+|||+|||++....-... + + .+..+.. .+ --.--|+..+|++.+. .-
T Consensus 74 ~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~--------------~~---~apaip~al~l~~~l~~~G 136 (229)
T TIGR01675 74 GDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLG--------------KG---AAPALPEGLKLYQKIIELG 136 (229)
T ss_pred CCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHH--------------cC---CCCCCHHHHHHHHHHHHCC
Confidence 458999999999999987531000 0 0 0001100 00 0135689999999985 56
Q ss_pred ceEEEEcCCcHHHHHHHHhhhcCCCccccc-ccEEEccC-CCC---Cceecccc--c-cccCCceEEEcCChhhhh
Q 041003 78 YDIYLCTTRIRSYAMMMAKLLNPKCEYHIS-SRLITRED-FKE---KGKKSGDL--V-LRQEWGVVIVDDTEKVWK 145 (282)
Q Consensus 78 yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~-~rv~~r~~-~~~---~~~KdL~~--l-~~~~~~vvivDd~~~~~~ 145 (282)
++|++.|.-.........+.|.-.| |++ ++++-|.. ... ...|+-.+ + ..+-+-+..|+|+..-+.
T Consensus 137 ~~Vf~lTGR~e~~r~~T~~nL~~~G--~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~ 210 (229)
T TIGR01675 137 IKIFLLSGRWEELRNATLDNLINAG--FTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLL 210 (229)
T ss_pred CEEEEEcCCChHHHHHHHHHHHHcC--CCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhc
Confidence 9999999988877777777775555 322 56666752 111 11132211 1 134566777888764443
No 127
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=92.07 E-value=0.28 Score=41.42 Aligned_cols=60 Identities=8% Similarity=-0.105 Sum_probs=38.7
Q ss_pred cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcCCh
Q 041003 76 KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 76 ~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd~~ 141 (282)
+.+++.|-|+.....+..+++.+.-.. +| .+ .++-.....+-+..++-+.+.+++|-|+.
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f-~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~ 122 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LY-QG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDL 122 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-ee-cC----CCcHHHHHHHHHHHhCCCHHHEEEECCCH
Confidence 679999999999999999999986443 44 11 00000011122333445678899998886
No 128
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=91.91 E-value=0.66 Score=41.43 Aligned_cols=92 Identities=14% Similarity=0.056 Sum_probs=56.6
Q ss_pred CCeeEEEeCCCceeeeeccCccchhhHHh-hhhh---cCCCCC--Ccce--ee---cceeEEEEecccHHHHHHHHhc-C
Q 041003 10 KKLHLVLDLDQTLPHAVDIDILASKDRKY-LMKQ---RGSSSD--GDLF--KM---ASELFLVKVRSYIRKFLKKASK-M 77 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~-~~~~---~~~~~d--~~~~--~~---~~~~~~v~~RP~l~~FL~~~~~-~ 77 (282)
....+|+|+|+||+-+. .+-.++.+... ...- ..+..+ ...+ .+ ....-....=|.+-++++.+++ .
T Consensus 19 ~~tLvvfDiDdTLi~~~-~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~ 97 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPK-QPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKG 97 (252)
T ss_pred CCeEEEEEcchhhhcCc-cccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCC
Confidence 56788999999999876 33333222211 1110 000000 0000 00 1122345677899999999985 5
Q ss_pred ceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003 78 YDIYLCTTRIRSYAMMMAKLLNPKC 102 (282)
Q Consensus 78 yei~i~T~~~~~Ya~~v~~~ldp~~ 102 (282)
.-++..|+..+.|...-++.|--.|
T Consensus 98 ~~v~alT~~~~~~~~~t~~~Lk~~g 122 (252)
T PF11019_consen 98 IPVIALTARGPNMEDWTLRELKSLG 122 (252)
T ss_pred CcEEEEcCCChhhHHHHHHHHHHCC
Confidence 9999999999999999988874333
No 129
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=91.77 E-value=0.21 Score=43.53 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=58.0
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC--------CCceecccc----cc
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK--------EKGKKSGDL----VL 128 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~--------~~~~KdL~~----l~ 128 (282)
+|.-|-|++||-+|.+.+ .++||+|.+..|..+++.|.-... | ..|++-+-.. ++..+...+ .+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieDc-F--egii~~e~~np~~~~~vcKP~~~afE~a~k~ag 174 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIEDC-F--EGIICFETLNPIEKTVVCKPSEEAFEKAMKVAG 174 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHHh-c--cceeEeeccCCCCCceeecCCHHHHHHHHHHhC
Confidence 777888999999998888 999999999999999999977653 5 4455433221 111222222 22
Q ss_pred -ccCCceEEEcCChhhhh
Q 041003 129 -RQEWGVVIVDDTEKVWK 145 (282)
Q Consensus 129 -~~~~~vvivDd~~~~~~ 145 (282)
.++++++++||+...-.
T Consensus 175 i~~p~~t~FfDDS~~NI~ 192 (244)
T KOG3109|consen 175 IDSPRNTYFFDDSERNIQ 192 (244)
T ss_pred CCCcCceEEEcCchhhHH
Confidence 25899999999986554
No 130
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=91.76 E-value=0.37 Score=42.54 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=40.1
Q ss_pred EEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHHHH
Q 041003 14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAM 92 (282)
Q Consensus 14 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~ 92 (282)
+++||||||+.... . ..|...+.|+++.+ -..+++.|......+.
T Consensus 2 i~~DlDGTLl~~~~--~--------------------------------i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~ 47 (256)
T TIGR00099 2 IFIDLDGTLLNDDH--T--------------------------------ISPSTKEALAKLREKGIKVVLATGRPYKEVK 47 (256)
T ss_pred EEEeCCCCCCCCCC--c--------------------------------cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHH
Confidence 78999999997532 1 23455667777764 4889999998888888
Q ss_pred HHHhhhcCC
Q 041003 93 MMAKLLNPK 101 (282)
Q Consensus 93 ~v~~~ldp~ 101 (282)
.+++.+...
T Consensus 48 ~~~~~~~~~ 56 (256)
T TIGR00099 48 NILKELGLD 56 (256)
T ss_pred HHHHHcCCC
Confidence 888887655
No 131
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=91.66 E-value=0.36 Score=40.91 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=29.0
Q ss_pred cccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhh
Q 041003 64 RSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLL 98 (282)
Q Consensus 64 RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~l 98 (282)
.|.+.+.|+++.+. ..+++-|.....++..+++.+
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 46778888888765 788999999999999988875
No 132
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=91.61 E-value=0.44 Score=42.27 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=37.8
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHH
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRS 89 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~ 89 (282)
...+++||||||++... ..+ |...+-|+++.+. ..+++.|.-...
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~--------------------------------~~~~~ai~~l~~~G~~~~iaTGR~~~ 48 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH--TIS--------------------------------PAVKQAIAAARAKGVNVVLTTGRPYA 48 (270)
T ss_pred eEEEEEecCCcCcCCCC--ccC--------------------------------HHHHHHHHHHHHCCCEEEEecCCChH
Confidence 35789999999998632 122 3344556666544 677777777777
Q ss_pred HHHHHHhhhcCC
Q 041003 90 YAMMMAKLLNPK 101 (282)
Q Consensus 90 Ya~~v~~~ldp~ 101 (282)
.+.++++.+...
T Consensus 49 ~~~~~~~~l~~~ 60 (270)
T PRK10513 49 GVHRYLKELHME 60 (270)
T ss_pred HHHHHHHHhCCC
Confidence 777777777643
No 133
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=91.58 E-value=0.44 Score=40.92 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=41.8
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHH
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYA 91 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya 91 (282)
.+++||||||+.... ..-|...+-|+++.+. ..+++.|.-....+
T Consensus 3 ~v~~DlDGTLl~~~~----------------------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~ 48 (215)
T TIGR01487 3 LVAIDIDGTLTEPNR----------------------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFA 48 (215)
T ss_pred EEEEecCCCcCCCCc----------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhH
Confidence 679999999995321 1345566667777644 88899998888888
Q ss_pred HHHHhhhcCCC
Q 041003 92 MMMAKLLNPKC 102 (282)
Q Consensus 92 ~~v~~~ldp~~ 102 (282)
..+.+.|+..+
T Consensus 49 ~~~~~~l~~~~ 59 (215)
T TIGR01487 49 RALAVLIGTSG 59 (215)
T ss_pred HHHHHHhCCCC
Confidence 88888887664
No 134
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=91.55 E-value=0.51 Score=42.17 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=35.9
Q ss_pred CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc
Q 041003 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI 87 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~ 87 (282)
+.+..+++||||||+++... .+ |-..+-|+++.+ -..+++.|.-.
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~--i~--------------------------------~~~~~ai~~l~~~Gi~~viaTGR~ 50 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY--DW--------------------------------QPAAPWLTRLREAQVPVILCSSKT 50 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc--Cc--------------------------------HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 45667899999999986321 11 122344555543 36667777666
Q ss_pred HHHHHHHHhhhcC
Q 041003 88 RSYAMMMAKLLNP 100 (282)
Q Consensus 88 ~~Ya~~v~~~ldp 100 (282)
...+..+++.|+.
T Consensus 51 ~~~i~~~~~~l~~ 63 (271)
T PRK03669 51 AAEMLPLQQTLGL 63 (271)
T ss_pred HHHHHHHHHHhCC
Confidence 6666667776654
No 135
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=91.28 E-value=0.41 Score=42.96 Aligned_cols=59 Identities=20% Similarity=0.038 Sum_probs=40.5
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc--CceEEEEcCCcH
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK--MYDIYLCTTRIR 88 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~--~yei~i~T~~~~ 88 (282)
++.+++|+||||+.....|... ..-|.+.+-|+.+++ ...++|.|.-..
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~-----------------------------~i~~~~~~~L~~L~~~~g~~v~i~SGR~~ 64 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQV-----------------------------VVPDNILQGLQLLATANDGALALISGRSM 64 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccc-----------------------------cCCHHHHHHHHHHHhCCCCcEEEEeCCCH
Confidence 5789999999999865433211 134777888888875 366777777777
Q ss_pred HHHHHHHhhh
Q 041003 89 SYAMMMAKLL 98 (282)
Q Consensus 89 ~Ya~~v~~~l 98 (282)
.-+..+++.+
T Consensus 65 ~~~~~~~~~~ 74 (266)
T PRK10187 65 VELDALAKPY 74 (266)
T ss_pred HHHHHhcCcc
Confidence 6666666544
No 136
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=91.11 E-value=0.43 Score=39.38 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=36.0
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHH
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYA 91 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya 91 (282)
.+++|+||||+.+....... ..-+.. +..|++.++++++.+. |.+++.|.....-+
T Consensus 1 iVisDIDGTL~~sd~~~~~~--------------------~~~~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~ 57 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVV--------------------PIIGKD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQA 57 (157)
T ss_pred CEEEecCCCCcccccccccc--------------------cccccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHH
Confidence 37899999999875321111 000111 2479999999999865 66666666555544
Q ss_pred H
Q 041003 92 M 92 (282)
Q Consensus 92 ~ 92 (282)
.
T Consensus 58 ~ 58 (157)
T smart00775 58 D 58 (157)
T ss_pred H
Confidence 3
No 137
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=90.91 E-value=0.97 Score=46.09 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=46.4
Q ss_pred HHHHHHHhCCeEeccc------CCCccEEEEcCCCCCcHHH--HHHHHC--CCceecHHHHHHHHHhCCcCCCCCCC
Q 041003 214 LKWRAGELGAACTDVY------NLSVAQVVSVSSRLGIKGH--RLAEQH--NKFLVHPQWIYAAYYLWSRQVEKDYF 280 (282)
Q Consensus 214 l~~~~~~~Ga~v~~~~------~~~vTHlV~~~~~~~t~K~--~~A~~~--gi~IV~~~WL~~c~~~~~r~~E~~y~ 280 (282)
..-.++.+|+.+...- ....||+|+..=+....+. ..|... ..+||+|.|+.+|......+||+.|+
T Consensus 805 ~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 805 IELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred HHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCccccCC
Confidence 3456788899997653 2468999987211222222 222222 33999999999999999999999985
No 138
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=90.37 E-value=0.79 Score=40.56 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=33.3
Q ss_pred eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003 12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY 90 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y 90 (282)
..+++||||||+.+.. ..+ |...+-|+++.+ -..+++.|.-....
T Consensus 4 kli~~DlDGTLl~~~~--~i~--------------------------------~~~~~ai~~~~~~G~~~~iaTGR~~~~ 49 (272)
T PRK10530 4 RVIALDLDGTLLTPKK--TIL--------------------------------PESLEALARAREAGYKVIIVTGRHHVA 49 (272)
T ss_pred cEEEEeCCCceECCCC--ccC--------------------------------HHHHHHHHHHHHCCCEEEEEcCCChHH
Confidence 4789999999997643 122 223344444443 35666666655555
Q ss_pred HHHHHhhhcCC
Q 041003 91 AMMMAKLLNPK 101 (282)
Q Consensus 91 a~~v~~~ldp~ 101 (282)
+..+++.++..
T Consensus 50 ~~~~~~~l~~~ 60 (272)
T PRK10530 50 IHPFYQALALD 60 (272)
T ss_pred HHHHHHhcCCC
Confidence 66666666544
No 139
>PRK10444 UMP phosphatase; Provisional
Probab=90.34 E-value=0.55 Score=41.73 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=34.6
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHHH
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYA 91 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya 91 (282)
.+++|+||||++... .-||..+|++.+.+ ...+++-|+.+..-+
T Consensus 3 ~v~~DlDGtL~~~~~-----------------------------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~ 47 (248)
T PRK10444 3 NVICDIDGVLMHDNV-----------------------------------AVPGAAEFLHRILDKGLPLVLLTNYPSQTG 47 (248)
T ss_pred EEEEeCCCceEeCCe-----------------------------------eCccHHHHHHHHHHCCCeEEEEeCCCCCCH
Confidence 578999999998742 13667777777754 466777777666555
Q ss_pred HHHHhhh
Q 041003 92 MMMAKLL 98 (282)
Q Consensus 92 ~~v~~~l 98 (282)
..+.+.|
T Consensus 48 ~~~~~~l 54 (248)
T PRK10444 48 QDLANRF 54 (248)
T ss_pred HHHHHHH
Confidence 5555554
No 140
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=89.80 E-value=0.64 Score=41.13 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=39.4
Q ss_pred EEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHH
Q 041003 14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAM 92 (282)
Q Consensus 14 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~ 92 (282)
+++||||||+++... .-|...++++.+.+. ..+++.|.-+...+.
T Consensus 2 i~~DlDGTll~~~~~----------------------------------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~ 47 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY----------------------------------DWGPAKEVLERLQELGIPVIPCTSKTAAEVE 47 (256)
T ss_pred EEEcCCCCCcCCCCc----------------------------------CchHHHHHHHHHHHCCCeEEEEcCCCHHHHH
Confidence 689999999976431 112356778888754 788888888888888
Q ss_pred HHHhhhcC
Q 041003 93 MMAKLLNP 100 (282)
Q Consensus 93 ~v~~~ldp 100 (282)
++++.++.
T Consensus 48 ~~~~~~~~ 55 (256)
T TIGR01486 48 YLRKELGL 55 (256)
T ss_pred HHHHHcCC
Confidence 88888763
No 141
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=89.64 E-value=0.92 Score=39.10 Aligned_cols=56 Identities=21% Similarity=0.263 Sum_probs=37.3
Q ss_pred eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003 12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY 90 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y 90 (282)
..+++||||||+.+... +.|...+-|+++.+ -..+++.|.-....
T Consensus 4 kli~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~~~~ 49 (230)
T PRK01158 4 KAIAIDIDGTITDKDRR----------------------------------LSLKAVEAIRKAEKLGIPVILATGNVLCF 49 (230)
T ss_pred eEEEEecCCCcCCCCCc----------------------------------cCHHHHHHHHHHHHCCCEEEEEcCCchHH
Confidence 57899999999965321 23445555666654 35777777777777
Q ss_pred HHHHHhhhcCC
Q 041003 91 AMMMAKLLNPK 101 (282)
Q Consensus 91 a~~v~~~ldp~ 101 (282)
+.++++.+...
T Consensus 50 ~~~~~~~l~~~ 60 (230)
T PRK01158 50 ARAAAKLIGTS 60 (230)
T ss_pred HHHHHHHhCCC
Confidence 77777777644
No 142
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=89.44 E-value=0.8 Score=41.22 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=29.3
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI 87 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~ 87 (282)
.+++|+||||++... .-||..++|+++.+ ...+++.|+++
T Consensus 4 ~~~~D~DGtl~~~~~-----------------------------------~~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 4 GFIFDCDGVLWLGER-----------------------------------VVPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred EEEEeCCCceEcCCe-----------------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 678999999987522 23677888888864 46788888754
No 143
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=89.12 E-value=0.65 Score=41.38 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=33.4
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHH
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRS 89 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~ 89 (282)
.+++|+||||++..... . ..-|+..++++++.+ -..+++.|+.+..
T Consensus 3 ~i~~D~DGtl~~~~~~~--~-----------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 3 GVLLDISGVLYISDAKS--G-----------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred EEEEeCCCeEEeCCCcc--c-----------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 68999999999874310 0 034788999999975 4888888875554
No 144
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=89.04 E-value=0.36 Score=42.55 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=35.1
Q ss_pred CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcH
Q 041003 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIR 88 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~ 88 (282)
.||..|+||+||||+-....|.. .+.-|++.+-|+.|++.....|+=.+.|
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~p~~-----------------------------~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPDPDA-----------------------------AVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred CCcEEEEEecCccccCCcCCCcc-----------------------------cCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 36788999999999964433211 1245889999999998766543333333
Q ss_pred HH
Q 041003 89 SY 90 (282)
Q Consensus 89 ~Y 90 (282)
.+
T Consensus 52 ~~ 53 (244)
T TIGR00685 52 KF 53 (244)
T ss_pred Ch
Confidence 44
No 145
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=88.49 E-value=0.78 Score=39.36 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=11.1
Q ss_pred EEEeCCCceeeee
Q 041003 14 LVLDLDQTLPHAV 26 (282)
Q Consensus 14 LVLDLD~TLihs~ 26 (282)
+++||||||+.+.
T Consensus 1 i~~DlDGTLl~~~ 13 (225)
T TIGR01482 1 IASDIDGTLTDPN 13 (225)
T ss_pred CeEeccCccCCCC
Confidence 5799999999764
No 146
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=88.47 E-value=1.1 Score=39.96 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=12.5
Q ss_pred eeEEEeCCCceeeee
Q 041003 12 LHLVLDLDQTLPHAV 26 (282)
Q Consensus 12 l~LVLDLD~TLihs~ 26 (282)
..+++||||||+.+.
T Consensus 3 kli~~DlDGTLl~~~ 17 (272)
T PRK15126 3 RLAAFDMDGTLLMPD 17 (272)
T ss_pred cEEEEeCCCcCcCCC
Confidence 478999999999753
No 147
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=88.40 E-value=0.94 Score=39.90 Aligned_cols=15 Identities=53% Similarity=0.634 Sum_probs=12.9
Q ss_pred CeeEEEeCCCceeee
Q 041003 11 KLHLVLDLDQTLPHA 25 (282)
Q Consensus 11 kl~LVLDLD~TLihs 25 (282)
++.++.||||||+.+
T Consensus 1 ~~li~tDlDGTLl~~ 15 (249)
T TIGR01485 1 RLLLVSDLDNTLVDH 15 (249)
T ss_pred CeEEEEcCCCcCcCC
Confidence 467899999999975
No 148
>PLN02645 phosphoglycolate phosphatase
Probab=88.22 E-value=0.81 Score=41.97 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=38.3
Q ss_pred chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEE
Q 041003 5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLC 83 (282)
Q Consensus 5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~ 83 (282)
.++.+-| .+++|+||||++... .=||..++|+.+. +...+++-
T Consensus 23 ~~~~~~~-~~~~D~DGtl~~~~~-----------------------------------~~~ga~e~l~~lr~~g~~~~~~ 66 (311)
T PLN02645 23 ELIDSVE-TFIFDCDGVIWKGDK-----------------------------------LIEGVPETLDMLRSMGKKLVFV 66 (311)
T ss_pred HHHHhCC-EEEEeCcCCeEeCCc-----------------------------------cCcCHHHHHHHHHHCCCEEEEE
Confidence 3444433 679999999987632 1177888888886 45788888
Q ss_pred cCCcHHHHHHHHhhh
Q 041003 84 TTRIRSYAMMMAKLL 98 (282)
Q Consensus 84 T~~~~~Ya~~v~~~l 98 (282)
|+.+..-...+++.|
T Consensus 67 TN~~~~~~~~~~~~l 81 (311)
T PLN02645 67 TNNSTKSRAQYGKKF 81 (311)
T ss_pred eCCCCCCHHHHHHHH
Confidence 887744444444443
No 149
>PRK10976 putative hydrolase; Provisional
Probab=87.78 E-value=1.3 Score=39.20 Aligned_cols=15 Identities=33% Similarity=0.224 Sum_probs=12.8
Q ss_pred eeEEEeCCCceeeee
Q 041003 12 LHLVLDLDQTLPHAV 26 (282)
Q Consensus 12 l~LVLDLD~TLihs~ 26 (282)
..+++||||||+.+.
T Consensus 3 kli~~DlDGTLl~~~ 17 (266)
T PRK10976 3 QVVASDLDGTLLSPD 17 (266)
T ss_pred eEEEEeCCCCCcCCC
Confidence 478999999999764
No 150
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=87.63 E-value=0.74 Score=39.63 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=41.3
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEE
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLI 111 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~ 111 (282)
+.++||+.+|++.+.+.+.++|-|++...++.++++.++-.. +| .+++.
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~-an~l~ 115 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LL-CHKLE 115 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hh-ceeeE
Confidence 568999999999998778999999999999999999987553 45 44443
No 151
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=86.99 E-value=0.99 Score=40.72 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=39.2
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHH
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRS 89 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~ 89 (282)
.-...+||||||++... .=||..+||+.+.+. -.+++-||++..
T Consensus 8 y~~~l~DlDGvl~~G~~-----------------------------------~ipga~e~l~~L~~~g~~~iflTNn~~~ 52 (269)
T COG0647 8 YDGFLFDLDGVLYRGNE-----------------------------------AIPGAAEALKRLKAAGKPVIFLTNNSTR 52 (269)
T ss_pred cCEEEEcCcCceEeCCc-----------------------------------cCchHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 34678999999997643 238999999999765 778888888766
Q ss_pred HHHHHHhhh
Q 041003 90 YAMMMAKLL 98 (282)
Q Consensus 90 Ya~~v~~~l 98 (282)
-.+.+.+.|
T Consensus 53 s~~~~~~~L 61 (269)
T COG0647 53 SREVVAARL 61 (269)
T ss_pred CHHHHHHHH
Confidence 555555444
No 152
>PLN02423 phosphomannomutase
Probab=86.85 E-value=1.4 Score=38.93 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=13.6
Q ss_pred CCCeeEEEeCCCceeeee
Q 041003 9 QKKLHLVLDLDQTLPHAV 26 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~ 26 (282)
+.|..+++||||||+.+.
T Consensus 5 ~~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR 22 (245)
T ss_pred ccceEEEEeccCCCcCCC
Confidence 345566699999999764
No 153
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=86.72 E-value=0.68 Score=40.60 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=51.1
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV 134 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v 134 (282)
+..-||+.++|+.+.+.|.+.|-|+|+.. ++...- ..+| +.+++.++... .+.+-+++++-+.+.+
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl-~~~f--d~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 183 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGL-GDYF--EFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEI 183 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCc-HHhh--ceeEecccCCcCCCcHHHHHHHHHHcCCChhHE
Confidence 55669999999999888999999998875 233221 2356 55665554321 1233344555678899
Q ss_pred EEEcCCh--hhhh
Q 041003 135 VIVDDTE--KVWK 145 (282)
Q Consensus 135 vivDd~~--~~~~ 145 (282)
++|.|++ ++-.
T Consensus 184 ~~VGD~~~~Di~~ 196 (238)
T PRK10748 184 LHVGDDLTTDVAG 196 (238)
T ss_pred EEEcCCcHHHHHH
Confidence 9998873 5554
No 154
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=86.52 E-value=1.1 Score=36.41 Aligned_cols=30 Identities=20% Similarity=0.538 Sum_probs=26.3
Q ss_pred EEecccHHHHHHHHhcCceEEEEcCCcHHH
Q 041003 61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSY 90 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Y 90 (282)
...-||.++-++++.+.|+++|-|++...|
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp 96 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHP 96 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCc
Confidence 567799999999999999999999995544
No 155
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=86.50 E-value=1.4 Score=36.04 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=38.8
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCccccccc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSR 109 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~r 109 (282)
+.++||+.++++.+.+ .+.++|.|++.+.|++++++.+.-.. +| +.+
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~-~~~ 119 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VF-ANR 119 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-he-eee
Confidence 5579999999999964 58999999999999999999886543 44 444
No 156
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.45 E-value=0.37 Score=46.57 Aligned_cols=109 Identities=23% Similarity=0.252 Sum_probs=63.3
Q ss_pred hcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeec----ceeEEEEecccHHHHHHHHhc-CceEE
Q 041003 7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMA----SELFLVKVRSYIRKFLKKASK-MYDIY 81 (282)
Q Consensus 7 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~v~~RP~l~~FL~~~~~-~yei~ 81 (282)
-+..|..||||||+||+-..-... + + .-++++ |..++ -+++|...+.+ -+=+.
T Consensus 218 ~g~~kK~LVLDLDNTLWGGVIGed-G-------------v---~GI~Ls~~~~G~~fk-----~fQ~~Ik~l~kqGVlLa 275 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGVIGED-G-------------V---DGIRLSNSAEGEAFK-----TFQNFIKGLKKQGVLLA 275 (574)
T ss_pred hCcccceEEEecCCcccccccccc-c-------------c---cceeecCCCCchhHH-----HHHHHHHHHHhccEEEE
Confidence 456788999999999998764311 1 1 112221 11111 25677777764 46788
Q ss_pred EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC------CCceecc----ccccccCCceEEEcCChhhhh
Q 041003 82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK------EKGKKSG----DLVLRQEWGVVIVDDTEKVWK 145 (282)
Q Consensus 82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~------~~~~KdL----~~l~~~~~~vvivDd~~~~~~ 145 (282)
|.|-.+..=|..+... -|. -|+.-++.. ....-++ ++++-+....|++||+|.-..
T Consensus 276 v~SKN~~~da~evF~k-hp~-------MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE 341 (574)
T COG3882 276 VCSKNTEKDAKEVFRK-HPD-------MILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERE 341 (574)
T ss_pred EecCCchhhHHHHHhh-CCC-------eEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHH
Confidence 8888888877777642 122 234233211 1112233 345568899999999995553
No 157
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=86.41 E-value=2.1 Score=36.46 Aligned_cols=39 Identities=5% Similarity=0.181 Sum_probs=35.3
Q ss_pred EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhc
Q 041003 61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLN 99 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ld 99 (282)
+++|||.++|.+++.++ -.++|-|+|...|..++.+.|-
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 78999999999999765 7899999999999999998764
No 158
>PLN02887 hydrolase family protein
Probab=86.38 E-value=1.5 Score=43.89 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=41.2
Q ss_pred ccchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEE
Q 041003 3 SEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIY 81 (282)
Q Consensus 3 ~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~ 81 (282)
..|..+.+...+++||||||+.+.. ..+ |.-.+-++++. +-..++
T Consensus 300 ~~~~~~~~iKLIa~DLDGTLLn~d~--~Is--------------------------------~~t~eAI~kl~ekGi~~v 345 (580)
T PLN02887 300 SLRFYKPKFSYIFCDMDGTLLNSKS--QIS--------------------------------ETNAKALKEALSRGVKVV 345 (580)
T ss_pred chhhhccCccEEEEeCCCCCCCCCC--ccC--------------------------------HHHHHHHHHHHHCCCeEE
Confidence 3456677777899999999997632 122 22334455554 346777
Q ss_pred EEcCCcHHHHHHHHhhhcC
Q 041003 82 LCTTRIRSYAMMMAKLLNP 100 (282)
Q Consensus 82 i~T~~~~~Ya~~v~~~ldp 100 (282)
|.|.-...-+..+++.++.
T Consensus 346 IATGR~~~~i~~~l~~L~l 364 (580)
T PLN02887 346 IATGKARPAVIDILKMVDL 364 (580)
T ss_pred EEcCCCHHHHHHHHHHhCc
Confidence 7776666666667776653
No 159
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=86.11 E-value=1.5 Score=39.46 Aligned_cols=64 Identities=19% Similarity=0.090 Sum_probs=50.8
Q ss_pred cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCce--EE
Q 041003 4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYD--IY 81 (282)
Q Consensus 4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~ye--i~ 81 (282)
+.....+|..++||.||||.+-...|... ..=|++.+-|..|+..+. ++
T Consensus 11 ~~~~~a~~~~~~lDyDGTl~~i~~~p~~a-----------------------------~~~~~l~~lL~~Las~~~~~v~ 61 (266)
T COG1877 11 EPYLNARKRLLFLDYDGTLTEIVPHPEAA-----------------------------VPDDRLLSLLQDLASDPRNVVA 61 (266)
T ss_pred cccccccceEEEEeccccccccccCcccc-----------------------------CCCHHHHHHHHHHHhcCCCeEE
Confidence 45667889999999999999988765332 133678999999999988 88
Q ss_pred EEcCCcHHHHHHHHh
Q 041003 82 LCTTRIRSYAMMMAK 96 (282)
Q Consensus 82 i~T~~~~~Ya~~v~~ 96 (282)
|.|--+..-.+..+.
T Consensus 62 iiSGR~~~~l~~~~~ 76 (266)
T COG1877 62 IISGRSLAELERLFG 76 (266)
T ss_pred EEeCCCHHHHHHhcC
Confidence 888888877777666
No 160
>PTZ00174 phosphomannomutase; Provisional
Probab=85.93 E-value=1.4 Score=38.82 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.1
Q ss_pred CeeEEEeCCCceeeeec
Q 041003 11 KLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~ 27 (282)
...+++||||||+++..
T Consensus 5 ~klia~DlDGTLL~~~~ 21 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRN 21 (247)
T ss_pred CeEEEEECcCCCcCCCC
Confidence 45789999999998754
No 161
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=85.78 E-value=1 Score=42.13 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=39.4
Q ss_pred ceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhh-c
Q 041003 56 SELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLL-N 99 (282)
Q Consensus 56 ~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~l-d 99 (282)
...-|+.+-||+.++|+.+.+ -..+.|-|++...|++.+++.+ +
T Consensus 178 dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 178 NPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred CHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 356788999999999999975 4899999999999999999997 5
No 162
>PTZ00445 p36-lilke protein; Provisional
Probab=85.73 E-value=0.71 Score=40.13 Aligned_cols=67 Identities=12% Similarity=0.005 Sum_probs=46.8
Q ss_pred chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEE
Q 041003 5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLC 83 (282)
Q Consensus 5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~ 83 (282)
.|.+.+=..+++|||+|||-.... +. ++ +. . ....+.-..+|.+.++++.+.+ .+.|+|-
T Consensus 37 ~L~~~GIk~Va~D~DnTlI~~Hsg---G~-~~-------~~-~-------~~~~~~~~~tpefk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 37 LLNECGIKVIASDFDLTMITKHSG---GY-ID-------PD-N-------DDIRVLTSVTPDFKILGKRLKNSNIKISVV 97 (219)
T ss_pred HHHHcCCeEEEecchhhhhhhhcc---cc-cC-------CC-c-------chhhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence 466677789999999999874321 10 00 00 0 1122445689999999999975 6999999
Q ss_pred cCCcHHH
Q 041003 84 TTRIRSY 90 (282)
Q Consensus 84 T~~~~~Y 90 (282)
|-+.+.-
T Consensus 98 TfSd~~~ 104 (219)
T PTZ00445 98 TFSDKEL 104 (219)
T ss_pred Eccchhh
Confidence 9998865
No 163
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=85.34 E-value=0.42 Score=42.24 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=46.5
Q ss_pred hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecc-----eeEEEEecccHHHHHHHHhcC-ce
Q 041003 6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMAS-----ELFLVKVRSYIRKFLKKASKM-YD 79 (282)
Q Consensus 6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~v~~RP~l~~FL~~~~~~-ye 79 (282)
.-+.+++.+|||||||.+..+.- .+ +...+.. .|.-.+ ..---+.=||..+||+.+-++ -.
T Consensus 74 ~~k~K~~aVvlDlDETvLdNs~Y--qg-----y~v~nnk------~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ 140 (274)
T COG2503 74 KKKGKKKAVVLDLDETVLDNSAY--QG-----YQVLNNK------GFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGK 140 (274)
T ss_pred cccCCCceEEEecchHhhcCccc--cc-----hhhhcCC------CCCccchHHHHhhcccccCccHHHHHHHHHhcCcE
Confidence 44567789999999999987642 11 1110000 011110 001235669999999999655 55
Q ss_pred EEEEcCCcHHH-HHHHHhhhc
Q 041003 80 IYLCTTRIRSY-AMMMAKLLN 99 (282)
Q Consensus 80 i~i~T~~~~~Y-a~~v~~~ld 99 (282)
|+--|+-.++- .++-++-|-
T Consensus 141 ifyiSNR~~~~~~~~T~~nLk 161 (274)
T COG2503 141 IFYISNRDQENEKDGTIENLK 161 (274)
T ss_pred EEEEeccchhcccchhHHHHH
Confidence 66556655555 455555554
No 164
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=85.14 E-value=1.8 Score=38.38 Aligned_cols=47 Identities=9% Similarity=-0.021 Sum_probs=25.8
Q ss_pred cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHH
Q 041003 209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWI 264 (282)
Q Consensus 209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL 264 (282)
|....+...++.+|. +..+++.-+|+. ..-+.-|++.|++.|...|-
T Consensus 179 P~~~~~~~~~~~~~~--------~~~~~~~VGD~~-~~Di~~a~~~G~~~v~v~~G 225 (249)
T TIGR01457 179 PNAIIMEKAVEHLGT--------EREETLMVGDNY-LTDIRAGIDAGIDTLLVHTG 225 (249)
T ss_pred ChHHHHHHHHHHcCC--------CcccEEEECCCc-hhhHHHHHHcCCcEEEEcCC
Confidence 444555566666653 223455542222 23466788888877666664
No 165
>PLN02151 trehalose-phosphatase
Probab=84.91 E-value=1.9 Score=40.51 Aligned_cols=62 Identities=23% Similarity=0.241 Sum_probs=46.1
Q ss_pred hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcC
Q 041003 6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTT 85 (282)
Q Consensus 6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~ 85 (282)
+.+.+++.|+||+||||+--...|. -+..-|.+.+-|+.+++.+.++|-|-
T Consensus 93 ~~~~~~~ll~lDyDGTL~PIv~~P~-----------------------------~A~~~~~~~~aL~~La~~~~vaIvSG 143 (354)
T PLN02151 93 KSEGKQIVMFLDYDGTLSPIVDDPD-----------------------------RAFMSKKMRNTVRKLAKCFPTAIVSG 143 (354)
T ss_pred hhcCCceEEEEecCccCCCCCCCcc-----------------------------cccCCHHHHHHHHHHhcCCCEEEEEC
Confidence 3456789999999999994332211 12355889999999999899999988
Q ss_pred CcHHHHHHHHh
Q 041003 86 RIRSYAMMMAK 96 (282)
Q Consensus 86 ~~~~Ya~~v~~ 96 (282)
-...-.+.++.
T Consensus 144 R~~~~l~~~~~ 154 (354)
T PLN02151 144 RCREKVSSFVK 154 (354)
T ss_pred CCHHHHHHHcC
Confidence 77777766654
No 166
>PLN03017 trehalose-phosphatase
Probab=84.85 E-value=2.1 Score=40.37 Aligned_cols=62 Identities=27% Similarity=0.269 Sum_probs=44.5
Q ss_pred hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcC
Q 041003 6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTT 85 (282)
Q Consensus 6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~ 85 (282)
+.+.+++.|+||+||||+-=...|.. ...-|.+.+-|+++++.+.++|-|-
T Consensus 106 ~~~~k~~llflD~DGTL~Piv~~p~~-----------------------------a~i~~~~~~aL~~La~~~~vaIvSG 156 (366)
T PLN03017 106 ASRGKQIVMFLDYDGTLSPIVDDPDK-----------------------------AFMSSKMRRTVKKLAKCFPTAIVTG 156 (366)
T ss_pred HhcCCCeEEEEecCCcCcCCcCCccc-----------------------------ccCCHHHHHHHHHHhcCCcEEEEeC
Confidence 34678899999999999932221110 1234778888999998899999988
Q ss_pred CcHHHHHHHHh
Q 041003 86 RIRSYAMMMAK 96 (282)
Q Consensus 86 ~~~~Ya~~v~~ 96 (282)
-...-+..+.+
T Consensus 157 R~~~~l~~~~~ 167 (366)
T PLN03017 157 RCIDKVYNFVK 167 (366)
T ss_pred CCHHHHHHhhc
Confidence 77777776643
No 167
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=84.55 E-value=5.8 Score=35.87 Aligned_cols=81 Identities=15% Similarity=0.031 Sum_probs=49.1
Q ss_pred cccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-----Cceecc--cc-ccccCCce
Q 041003 64 RSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSG--DL-VLRQEWGV 134 (282)
Q Consensus 64 RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-----~~~KdL--~~-l~~~~~~v 134 (282)
=|+..+|++.+. .-++|++-|.-....-+.-++.|.-.|--. -++++-|+.-.. ...|.- .. +..+-+-+
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~-~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv 225 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT-WEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIV 225 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC-cceeeecCCCCCccchhHHHHHHHHHHHHHcCceEE
Confidence 478999999995 568999999988777777777776555211 255666644211 011211 11 12345667
Q ss_pred EEEcCChhhhh
Q 041003 135 VIVDDTEKVWK 145 (282)
Q Consensus 135 vivDd~~~~~~ 145 (282)
..|||+..-+.
T Consensus 226 ~~iGDq~sDl~ 236 (275)
T TIGR01680 226 GIIGDQWNDLK 236 (275)
T ss_pred EEECCCHHhcc
Confidence 77888764443
No 168
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=84.46 E-value=1.2 Score=39.03 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=32.8
Q ss_pred EEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc----H
Q 041003 14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI----R 88 (282)
Q Consensus 14 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~----~ 88 (282)
+++|+||||+.+... =|+..++++.+.+ .+.+.+-|+++ +
T Consensus 1 ~lfD~DGvL~~~~~~-----------------------------------~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~ 45 (236)
T TIGR01460 1 FLFDIDGVLWLGHKP-----------------------------------IPGAAEALNRLRAKGKPVVFLTNNSSRSEE 45 (236)
T ss_pred CEEeCcCccCcCCcc-----------------------------------CcCHHHHHHHHHHCCCeEEEEECCCCCCHH
Confidence 479999999987431 2567777777754 37777777544 4
Q ss_pred HHHHHHHhh
Q 041003 89 SYAMMMAKL 97 (282)
Q Consensus 89 ~Ya~~v~~~ 97 (282)
.+++.+.++
T Consensus 46 ~~~~~l~~~ 54 (236)
T TIGR01460 46 DYAEKLSSL 54 (236)
T ss_pred HHHHHHHHh
Confidence 555555553
No 169
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=84.32 E-value=2 Score=36.46 Aligned_cols=104 Identities=16% Similarity=0.041 Sum_probs=60.7
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCC---
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTR--- 86 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~--- 86 (282)
...|+||.||||+--... ...... -..+.||+.+=|..+. ..|.++|+|+.
T Consensus 5 ~k~lflDRDGtin~d~~~-yv~~~~------------------------~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi 59 (181)
T COG0241 5 QKALFLDRDGTINIDKGD-YVDSLD------------------------DFQFIPGVIPALLKLQRAGYKLVVVTNQSGI 59 (181)
T ss_pred CcEEEEcCCCceecCCCc-ccCcHH------------------------HhccCccHHHHHHHHHhCCCeEEEEECCCCc
Confidence 678999999999865432 111010 1236799999999996 46999999992
Q ss_pred -cHHH--------HHHHHhhhcCCCcccccccEEEc-------cCCCCCceec----cccccccCCceEEEcCCh
Q 041003 87 -IRSY--------AMMMAKLLNPKCEYHISSRLITR-------EDFKEKGKKS----GDLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 87 -~~~Y--------a~~v~~~ldp~~~~f~~~rv~~r-------~~~~~~~~Kd----L~~l~~~~~~vvivDd~~ 141 (282)
+..| -..+.+.|--.+.-| .+ +++- .+|.++..+- ++...-|+++..+|-|+.
T Consensus 60 ~rgyf~~~~f~~~~~~m~~~l~~~gv~i-d~-i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~ 132 (181)
T COG0241 60 GRGYFTEADFDKLHNKMLKILASQGVKI-DG-ILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRL 132 (181)
T ss_pred cccCccHHHHHHHHHHHHHHHHHcCCcc-ce-EEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcH
Confidence 2222 333555555555434 22 3321 1233322222 222334778888888885
No 170
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=83.93 E-value=0.64 Score=40.86 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=47.8
Q ss_pred CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCc
Q 041003 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRI 87 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~ 87 (282)
.+++.+|||+|||++.+... .. ........-..++-..+...+.. .-=||..+|++.+.+. ++|++-|.-.
T Consensus 70 ~~~~avv~DIDeTvLsn~~y--~~---~~~~~~~~~~~~~w~~wv~~~~~---~aip~a~~l~~~~~~~G~~V~~iT~R~ 141 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPY--YA---YLIFGGESFSPEDWDEWVASGKA---PAIPGALELYNYARSRGVKVFFITGRP 141 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHH--HH---HHHHHTHHH-CCHHHHHHHCTGG---EEETTHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCcEEEEECCcccccCHHH--HH---HHhhccCCCChHHHHHHHhcccC---cccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57899999999999954321 00 00000000000000000001111 4558999999999755 8999999877
Q ss_pred HHHHHHHHhhhcCCC
Q 041003 88 RSYAMMMAKLLNPKC 102 (282)
Q Consensus 88 ~~Ya~~v~~~ldp~~ 102 (282)
...-+.-++.|.-.|
T Consensus 142 ~~~r~~T~~nL~~~G 156 (229)
T PF03767_consen 142 ESQREATEKNLKKAG 156 (229)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHcC
Confidence 765556666665444
No 171
>PLN02382 probable sucrose-phosphatase
Probab=83.45 E-value=1.8 Score=41.52 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred ccchhcCCCeeEEEeCCCceeee
Q 041003 3 SEMVYRQKKLHLVLDLDQTLPHA 25 (282)
Q Consensus 3 ~~~l~~~~kl~LVLDLD~TLihs 25 (282)
+.||-+..++.|+.||||||+.+
T Consensus 1 ~~~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 1 MDRLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCcccCCCCEEEEEcCCCcCcCC
Confidence 36788899999999999999965
No 172
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.28 E-value=2.9 Score=38.30 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=36.7
Q ss_pred eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003 12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY 90 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y 90 (282)
..+++||||||+.+... .. +-..+-|+++.+ -..+++.|.-+..=
T Consensus 2 KLIftDLDGTLLd~~~~--~~--------------------------------~~a~~aL~~Lk~~GI~vVlaTGRt~~e 47 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFN--SY--------------------------------GAARQALAALERRSIPLVLYSLRTRAQ 47 (302)
T ss_pred cEEEEeCCCCCcCCCCc--CC--------------------------------HHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence 46799999999986431 11 224455666654 46777777777766
Q ss_pred HHHHHhhhcCC
Q 041003 91 AMMMAKLLNPK 101 (282)
Q Consensus 91 a~~v~~~ldp~ 101 (282)
...+.+.|.-.
T Consensus 48 v~~l~~~Lgl~ 58 (302)
T PRK12702 48 LEHLCRQLRLE 58 (302)
T ss_pred HHHHHHHhCCC
Confidence 66777777654
No 173
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=82.28 E-value=4.3 Score=35.64 Aligned_cols=62 Identities=23% Similarity=0.148 Sum_probs=42.1
Q ss_pred CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHH-hcCceEEEEcCCc
Q 041003 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKA-SKMYDIYLCTTRI 87 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~-~~~yei~i~T~~~ 87 (282)
+..+.+.+|||+|||-....++.. ..-+.++ -.-|+|+..|+-+
T Consensus 5 ~~~~lIFtDlD~TLl~~~ye~~pA-----------------------------------~pv~~el~d~G~~Vi~~SSKT 49 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHSYEWQPA-----------------------------------APVLLELKDAGVPVILCSSKT 49 (274)
T ss_pred ccceEEEEcccCcccCCCCCCCcc-----------------------------------chHHHHHHHcCCeEEEeccch
Confidence 456788999999999844432111 1123334 3569999999888
Q ss_pred HHHHHHHHhhhcCCCccc
Q 041003 88 RSYAMMMAKLLNPKCEYH 105 (282)
Q Consensus 88 ~~Ya~~v~~~ldp~~~~f 105 (282)
+.=-....+.|+-++..|
T Consensus 50 ~aE~~~l~~~l~v~~~p~ 67 (274)
T COG3769 50 RAEMLYLQKSLGVQGLPL 67 (274)
T ss_pred HHHHHHHHHhcCCCCCce
Confidence 877777778888776555
No 174
>PLN02580 trehalose-phosphatase
Probab=82.24 E-value=2.6 Score=39.96 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=47.7
Q ss_pred hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcC
Q 041003 6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTT 85 (282)
Q Consensus 6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~ 85 (282)
+.+.++..|+||.||||.--...|. -+..-|++.+-|+.+++.+.++|-|-
T Consensus 114 ~~~~k~~~LfLDyDGTLaPIv~~Pd-----------------------------~A~~s~~~~~aL~~La~~~~VAIVSG 164 (384)
T PLN02580 114 FAKGKKIALFLDYDGTLSPIVDDPD-----------------------------RALMSDAMRSAVKNVAKYFPTAIISG 164 (384)
T ss_pred HhhcCCeEEEEecCCccCCCCCCcc-----------------------------cccCCHHHHHHHHHHhhCCCEEEEeC
Confidence 3466889999999999985433221 12345899999999999999999998
Q ss_pred CcHHHHHHHHh
Q 041003 86 RIRSYAMMMAK 96 (282)
Q Consensus 86 ~~~~Ya~~v~~ 96 (282)
-...-.+..+.
T Consensus 165 R~~~~L~~~l~ 175 (384)
T PLN02580 165 RSRDKVYELVG 175 (384)
T ss_pred CCHHHHHHHhC
Confidence 88887776664
No 175
>PLN02954 phosphoserine phosphatase
Probab=82.00 E-value=2.1 Score=36.66 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=37.7
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCC-ccc
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKC-EYH 105 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~-~~f 105 (282)
..++||+.++|+.+.+ .+.++|-|++.+.+++.+++.++-.. .+|
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~ 129 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIF 129 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEE
Confidence 4688999999999965 58999999999999999999976432 355
No 176
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=81.75 E-value=0.73 Score=38.95 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=13.2
Q ss_pred eEEEeCCCceeeeec
Q 041003 13 HLVLDLDQTLPHAVD 27 (282)
Q Consensus 13 ~LVLDLD~TLihs~~ 27 (282)
.+++|+||||+.|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 479999999999975
No 177
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=81.63 E-value=0.77 Score=38.24 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=13.0
Q ss_pred eEEEeCCCceeeeec
Q 041003 13 HLVLDLDQTLPHAVD 27 (282)
Q Consensus 13 ~LVLDLD~TLihs~~ 27 (282)
.+++||||||+.|..
T Consensus 2 ~viFDlDGTL~ds~~ 16 (184)
T TIGR01993 2 VWFFDLDNTLYPHSA 16 (184)
T ss_pred eEEEeCCCCCCCCcc
Confidence 579999999998864
No 178
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=81.43 E-value=0.87 Score=37.88 Aligned_cols=42 Identities=17% Similarity=-0.064 Sum_probs=26.5
Q ss_pred cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceec
Q 041003 209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVH 260 (282)
Q Consensus 209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~ 260 (282)
|....+...++.+|.. -.+.|.-+ ....-+..|.+.|++.|.
T Consensus 143 P~p~~~~~~~~~~~~~--------~~~~l~ig--Ds~~di~aA~~aG~~~i~ 184 (188)
T PRK10725 143 PAPDTFLRCAQLMGVQ--------PTQCVVFE--DADFGIQAARAAGMDAVD 184 (188)
T ss_pred CChHHHHHHHHHcCCC--------HHHeEEEe--ccHhhHHHHHHCCCEEEe
Confidence 5566778888888752 12444442 234457778888887664
No 179
>PRK11587 putative phosphatase; Provisional
Probab=80.18 E-value=0.94 Score=38.97 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=14.1
Q ss_pred eeEEEeCCCceeeeec
Q 041003 12 LHLVLDLDQTLPHAVD 27 (282)
Q Consensus 12 l~LVLDLD~TLihs~~ 27 (282)
..+++||||||+.|..
T Consensus 4 k~viFDlDGTL~Ds~~ 19 (218)
T PRK11587 4 KGFLFDLDGTLVDSLP 19 (218)
T ss_pred CEEEEcCCCCcCcCHH
Confidence 4789999999999965
No 180
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=79.37 E-value=4 Score=41.53 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=36.7
Q ss_pred CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc
Q 041003 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI 87 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~ 87 (282)
+++..++.||||||+++... .. |...+-|+.+.+ -..+++.|.-+
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~--i~--------------------------------~~t~eAL~~L~ekGI~~VIATGRs 459 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTY--SY--------------------------------STALDALRLLKDKELPLVFCSAKT 459 (694)
T ss_pred ceeeEEEEECcCCCcCCCCc--cC--------------------------------HHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45778899999999987431 11 112334555543 36677777777
Q ss_pred HHHHHHHHhhhcC
Q 041003 88 RSYAMMMAKLLNP 100 (282)
Q Consensus 88 ~~Ya~~v~~~ldp 100 (282)
...+..+.+.|+.
T Consensus 460 ~~~i~~l~~~Lgl 472 (694)
T PRK14502 460 MGEQDLYRNELGI 472 (694)
T ss_pred HHHHHHHHHHcCC
Confidence 7777777766654
No 181
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=78.27 E-value=3.6 Score=42.28 Aligned_cols=63 Identities=22% Similarity=0.135 Sum_probs=44.4
Q ss_pred hcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc--CceEEEEc
Q 041003 7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK--MYDIYLCT 84 (282)
Q Consensus 7 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~--~yei~i~T 84 (282)
.+.++..+++|+||||+-....+... ..-|.+.+.|+.+++ ...++|-|
T Consensus 488 ~~~~~rLi~~D~DGTL~~~~~~~~~~-----------------------------~~~~~~~~~L~~L~~d~g~~V~ivS 538 (726)
T PRK14501 488 RAASRRLLLLDYDGTLVPFAPDPELA-----------------------------VPDKELRDLLRRLAADPNTDVAIIS 538 (726)
T ss_pred HhccceEEEEecCccccCCCCCcccC-----------------------------CCCHHHHHHHHHHHcCCCCeEEEEe
Confidence 45677899999999999653322111 134678888999987 67788888
Q ss_pred CCcHHHHHHHHhhh
Q 041003 85 TRIRSYAMMMAKLL 98 (282)
Q Consensus 85 ~~~~~Ya~~v~~~l 98 (282)
.-+..-.++....+
T Consensus 539 GR~~~~l~~~~~~~ 552 (726)
T PRK14501 539 GRDRDTLERWFGDL 552 (726)
T ss_pred CCCHHHHHHHhCCC
Confidence 88877776665543
No 182
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=77.80 E-value=1.2 Score=37.99 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.3
Q ss_pred eeEEEeCCCceeeeecc
Q 041003 12 LHLVLDLDQTLPHAVDI 28 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~ 28 (282)
..+++||||||+.+...
T Consensus 3 ~~viFDlDGTL~ds~~~ 19 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSGL 19 (221)
T ss_pred eEEEEeCCCCCcCCCCc
Confidence 47899999999998653
No 183
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=77.33 E-value=1.3 Score=37.77 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=14.0
Q ss_pred eeEEEeCCCceeeeec
Q 041003 12 LHLVLDLDQTLPHAVD 27 (282)
Q Consensus 12 l~LVLDLD~TLihs~~ 27 (282)
..+++|+||||++|..
T Consensus 4 ~~viFD~DGTL~ds~~ 19 (214)
T PRK13288 4 NTVLFDLDGTLINTNE 19 (214)
T ss_pred cEEEEeCCCcCccCHH
Confidence 4789999999999975
No 184
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=76.38 E-value=1.6 Score=36.85 Aligned_cols=15 Identities=20% Similarity=0.129 Sum_probs=13.2
Q ss_pred eEEEeCCCceeeeec
Q 041003 13 HLVLDLDQTLPHAVD 27 (282)
Q Consensus 13 ~LVLDLD~TLihs~~ 27 (282)
.+++||||||+.+..
T Consensus 2 ~viFDlDGTL~d~~~ 16 (203)
T TIGR02252 2 LITFDAVGTLLALKE 16 (203)
T ss_pred eEEEecCCceeeeCC
Confidence 589999999999864
No 185
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=76.22 E-value=1.5 Score=39.44 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=15.2
Q ss_pred CeeEEEeCCCceeeeecc
Q 041003 11 KLHLVLDLDQTLPHAVDI 28 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~ 28 (282)
...+++||||||++|...
T Consensus 13 ~k~viFDlDGTL~Ds~~~ 30 (272)
T PRK13223 13 PRLVMFDLDGTLVDSVPD 30 (272)
T ss_pred CCEEEEcCCCccccCHHH
Confidence 458999999999999653
No 186
>PRK11590 hypothetical protein; Provisional
Probab=76.00 E-value=1.6 Score=37.57 Aligned_cols=39 Identities=13% Similarity=-0.013 Sum_probs=31.2
Q ss_pred EEecccHHHHH-HHHh-cCceEEEEcCCcHHHHHHHHhhhc
Q 041003 61 VKVRSYIRKFL-KKAS-KMYDIYLCTTRIRSYAMMMAKLLN 99 (282)
Q Consensus 61 v~~RP~l~~FL-~~~~-~~yei~i~T~~~~~Ya~~v~~~ld 99 (282)
+..+||+.+.| +.+. +.+.++|-|++.+.|+.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45688999999 4565 578899999999999998888764
No 187
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=75.30 E-value=1.5 Score=38.08 Aligned_cols=47 Identities=21% Similarity=0.065 Sum_probs=27.6
Q ss_pred cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHH
Q 041003 209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIY 265 (282)
Q Consensus 209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~ 265 (282)
|....+...++.+|..- .+.+.-+ ....-+..|++.|++.|-..|-.
T Consensus 152 P~p~~~~~~~~~l~~~p--------~~~l~IG--Ds~~Di~aA~~aG~~~i~v~~g~ 198 (229)
T PRK13226 152 PHPLPLLVAAERIGVAP--------TDCVYVG--DDERDILAARAAGMPSVAALWGY 198 (229)
T ss_pred CCHHHHHHHHHHhCCCh--------hhEEEeC--CCHHHHHHHHHCCCcEEEEeecC
Confidence 55566777788887422 2334332 22344667777888877666643
No 188
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=75.04 E-value=1.7 Score=37.11 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.7
Q ss_pred eeEEEeCCCceeeeec
Q 041003 12 LHLVLDLDQTLPHAVD 27 (282)
Q Consensus 12 l~LVLDLD~TLihs~~ 27 (282)
..+++|+||||+.+..
T Consensus 2 k~iiFD~DGTL~ds~~ 17 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDG 17 (220)
T ss_pred cEEEEecCCCeeccCc
Confidence 3679999999999865
No 189
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=73.94 E-value=1.3 Score=37.65 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.4
Q ss_pred EEEeCCCceeeeec
Q 041003 14 LVLDLDQTLPHAVD 27 (282)
Q Consensus 14 LVLDLD~TLihs~~ 27 (282)
+++||||||+.|..
T Consensus 1 iiFDlDGTL~Ds~~ 14 (205)
T TIGR01454 1 VVFDLDGVLVDSFA 14 (205)
T ss_pred CeecCcCccccCHH
Confidence 58999999999965
No 190
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=73.85 E-value=1.7 Score=35.93 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=13.8
Q ss_pred eeEEEeCCCceeeeec
Q 041003 12 LHLVLDLDQTLPHAVD 27 (282)
Q Consensus 12 l~LVLDLD~TLihs~~ 27 (282)
..+++|+||||+.+..
T Consensus 2 ~~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAP 17 (185)
T ss_pred CeEEEcCCCcccCChH
Confidence 3679999999999975
No 191
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=73.82 E-value=1.5 Score=36.25 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=13.1
Q ss_pred eEEEeCCCceeeeec
Q 041003 13 HLVLDLDQTLPHAVD 27 (282)
Q Consensus 13 ~LVLDLD~TLihs~~ 27 (282)
.+++|+||||+.|..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999999875
No 192
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=73.43 E-value=2.3 Score=35.85 Aligned_cols=78 Identities=21% Similarity=0.077 Sum_probs=41.3
Q ss_pred EEecccHHHHHHHHhcC-ceEEEEcCCcHH-H---HHHHHhhhcCC-CcccccccEEEccCCCCCceeccccccccCCce
Q 041003 61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRS-Y---AMMMAKLLNPK-CEYHISSRLITREDFKEKGKKSGDLVLRQEWGV 134 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~-Y---a~~v~~~ldp~-~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~v 134 (282)
...=||+.+.|++|.+. +++++-|+.... | +..-.+-|+-. +.++ .++++.-.+ |.+ +.+|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~~------K~~--v~~D---- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFTGD------KTL--VGGD---- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEESS------GGG--C--S----
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEecC------CCe--Eecc----
Confidence 56679999999999987 477766666544 2 33344445433 1122 233332111 432 3333
Q ss_pred EEEcCChhhhhhCccCe
Q 041003 135 VIVDDTEKVWKDHKEHL 151 (282)
Q Consensus 135 vivDd~~~~~~~~~~N~ 151 (282)
++|||++.......+.+
T Consensus 139 vlIDD~~~n~~~~~~~g 155 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAG 155 (191)
T ss_dssp EEEESSSHHHSS-SSES
T ss_pred EEecCChHHHHhccCCC
Confidence 89999998776433344
No 193
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=72.92 E-value=1.8 Score=38.19 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=14.0
Q ss_pred eeEEEeCCCceeeeec
Q 041003 12 LHLVLDLDQTLPHAVD 27 (282)
Q Consensus 12 l~LVLDLD~TLihs~~ 27 (282)
..+++||||||+.|..
T Consensus 23 k~viFDlDGTLiDs~~ 38 (248)
T PLN02770 23 EAVLFDVDGTLCDSDP 38 (248)
T ss_pred CEEEEcCCCccCcCHH
Confidence 4689999999999975
No 194
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=72.58 E-value=4.9 Score=33.74 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=39.5
Q ss_pred EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccE
Q 041003 61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRL 110 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv 110 (282)
...+|++.++|+.+.+ .+.++|-|++...++.++++.+.-.. +| +.++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~-~~~l 134 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AI-GTRL 134 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eE-ecce
Confidence 4689999999999965 58999999999999999999886554 45 4443
No 195
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=72.33 E-value=2 Score=37.53 Aligned_cols=16 Identities=38% Similarity=0.380 Sum_probs=13.9
Q ss_pred eeEEEeCCCceeeeec
Q 041003 12 LHLVLDLDQTLPHAVD 27 (282)
Q Consensus 12 l~LVLDLD~TLihs~~ 27 (282)
..+++||||||+.+..
T Consensus 11 k~iiFDlDGTL~D~~~ 26 (238)
T PRK10748 11 SALTFDLDDTLYDNRP 26 (238)
T ss_pred eeEEEcCcccccCChH
Confidence 3789999999999864
No 196
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=71.58 E-value=1.9 Score=35.33 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=12.5
Q ss_pred EEEeCCCceeeeec
Q 041003 14 LVLDLDQTLPHAVD 27 (282)
Q Consensus 14 LVLDLD~TLihs~~ 27 (282)
+++|+||||+.+..
T Consensus 2 viFD~DGTL~D~~~ 15 (175)
T TIGR01493 2 MVFDVYGTLVDVHG 15 (175)
T ss_pred eEEecCCcCcccHH
Confidence 78999999999864
No 197
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=71.40 E-value=1.9 Score=35.35 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=13.0
Q ss_pred eEEEeCCCceeeeec
Q 041003 13 HLVLDLDQTLPHAVD 27 (282)
Q Consensus 13 ~LVLDLD~TLihs~~ 27 (282)
.+++||||||+.+..
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 379999999999965
No 198
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=71.35 E-value=2.1 Score=34.34 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=12.4
Q ss_pred EEEeCCCceeeeec
Q 041003 14 LVLDLDQTLPHAVD 27 (282)
Q Consensus 14 LVLDLD~TLihs~~ 27 (282)
+++|+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999998865
No 199
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=71.15 E-value=2 Score=38.76 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.5
Q ss_pred CeeEEEeCCCceeeeec
Q 041003 11 KLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~ 27 (282)
...+++||||||+.|..
T Consensus 62 ~k~vIFDlDGTLiDS~~ 78 (273)
T PRK13225 62 LQAIIFDFDGTLVDSLP 78 (273)
T ss_pred cCEEEECCcCccccCHH
Confidence 34689999999999975
No 200
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=71.14 E-value=1.6 Score=36.97 Aligned_cols=45 Identities=22% Similarity=0.005 Sum_probs=26.1
Q ss_pred cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHH
Q 041003 209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQW 263 (282)
Q Consensus 209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~W 263 (282)
|....+.+.++.+|.. ++ ..+.-+ ....-+..|.+.|++.+...|
T Consensus 142 p~p~~~~~~~~~~~~~------~~--~~~~ig--Ds~~d~~aa~~aG~~~i~v~~ 186 (213)
T TIGR01449 142 PHPDPLLLAAERLGVA------PQ--QMVYVG--DSRVDIQAARAAGCPSVLLTY 186 (213)
T ss_pred CChHHHHHHHHHcCCC------hh--HeEEeC--CCHHHHHHHHHCCCeEEEEcc
Confidence 4456677777777642 21 233331 123446667788888776655
No 201
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=70.38 E-value=2.5 Score=36.26 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.0
Q ss_pred CCeeEEEeCCCceeeeec
Q 041003 10 KKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~ 27 (282)
+-..+++|+||||+++..
T Consensus 6 ~~k~iiFD~DGTL~d~~~ 23 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEP 23 (222)
T ss_pred cCcEEEEcCCCCCCcCHH
Confidence 456889999999999854
No 202
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=70.25 E-value=2.4 Score=36.78 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.4
Q ss_pred CeeEEEeCCCceeeee
Q 041003 11 KLHLVLDLDQTLPHAV 26 (282)
Q Consensus 11 kl~LVLDLD~TLihs~ 26 (282)
-..+++||||||+.+.
T Consensus 10 ~k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 10 VDTVLLDMDGTLLDLA 25 (224)
T ss_pred CCEEEEcCCCCccchh
Confidence 3478999999999964
No 203
>PRK11590 hypothetical protein; Provisional
Probab=69.61 E-value=7.2 Score=33.38 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=13.6
Q ss_pred CCeeEEEeCCCceeeee
Q 041003 10 KKLHLVLDLDQTLPHAV 26 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~ 26 (282)
.+..+++||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 45588999999999443
No 204
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=69.40 E-value=2.8 Score=34.51 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.7
Q ss_pred CeeEEEeCCCceeeeec
Q 041003 11 KLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~ 27 (282)
|..+|+|+||||+....
T Consensus 1 ~~~iiFD~dgTL~~~~~ 17 (188)
T TIGR01489 1 KVVVVSDFDGTITLNDS 17 (188)
T ss_pred CeEEEEeCCCcccCCCc
Confidence 57899999999998754
No 205
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=69.19 E-value=3.1 Score=34.73 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.5
Q ss_pred CeeEEEeCCCceeeee
Q 041003 11 KLHLVLDLDQTLPHAV 26 (282)
Q Consensus 11 kl~LVLDLD~TLihs~ 26 (282)
...+++|+||||+.+.
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 4479999999999865
No 206
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=69.10 E-value=10 Score=39.77 Aligned_cols=97 Identities=18% Similarity=0.099 Sum_probs=56.2
Q ss_pred CCCcccccccchhheeecceeEEeeccCCCCc-----c--chhHHHHHHHHhC-CeEecccC-----------CCccEEE
Q 041003 177 VCGDVRCFLGKIQRQILVRCTLFFSRDVDDKE-----F--EFPLLKWRAGELG-AACTDVYN-----------LSVAQVV 237 (282)
Q Consensus 177 ~~~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~-----~--~~~~l~~~~~~~G-a~v~~~~~-----------~~vTHlV 237 (282)
++.+...|.+..+.+-|+|-++...+...... | ..-.+|.-+...| |.+..... +-.-|++
T Consensus 1044 ds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~ 1123 (1176)
T KOG3548|consen 1044 DSQLMPAIEPFNPSENLKDTTLYVKSTLSAREVTQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLV 1123 (1176)
T ss_pred ccccccCccccCchhhccceeeEeeccccceeEEEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEe
Confidence 45566666655555556655555555422211 1 1344554444444 44443321 1233444
Q ss_pred EcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCCcCC
Q 041003 238 SVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQV 275 (282)
Q Consensus 238 ~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~ 275 (282)
.. ..++.-.+.|...|+++|+++||-.|+-..++..
T Consensus 1124 d~--~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~i~ 1159 (1176)
T KOG3548|consen 1124 DG--TFRDSVMKYADTLGAPVVSSEWVIQTIILGKAIE 1159 (1176)
T ss_pred cC--ccHHHHHHHHHHhCCCccChhHhheeeeccccCC
Confidence 44 4555666778889999999999999987766553
No 207
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=69.10 E-value=2.4 Score=35.58 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.2
Q ss_pred eEEEeCCCceeeeec
Q 041003 13 HLVLDLDQTLPHAVD 27 (282)
Q Consensus 13 ~LVLDLD~TLihs~~ 27 (282)
.+++|+||||+++..
T Consensus 3 ~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 3 ALVFDVYGTLFDVHS 17 (198)
T ss_pred EEEEeCCCcCccHHH
Confidence 689999999999864
No 208
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=68.17 E-value=2.6 Score=35.94 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.6
Q ss_pred eeEEEeCCCceeeeec
Q 041003 12 LHLVLDLDQTLPHAVD 27 (282)
Q Consensus 12 l~LVLDLD~TLihs~~ 27 (282)
..+++|+||||+++..
T Consensus 7 ~~iiFD~DGTL~d~~~ 22 (226)
T PRK13222 7 RAVAFDLDGTLVDSAP 22 (226)
T ss_pred cEEEEcCCcccccCHH
Confidence 3789999999998854
No 209
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=68.16 E-value=3.1 Score=37.70 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=13.7
Q ss_pred eeEEEeCCCceeeee
Q 041003 12 LHLVLDLDQTLPHAV 26 (282)
Q Consensus 12 l~LVLDLD~TLihs~ 26 (282)
..+++|+||||+.|.
T Consensus 41 k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 41 EALLFDCDGVLVETE 55 (286)
T ss_pred cEEEEeCceeEEccc
Confidence 478999999999997
No 210
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=67.75 E-value=2.7 Score=35.74 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.4
Q ss_pred eEEEeCCCceeeeec
Q 041003 13 HLVLDLDQTLPHAVD 27 (282)
Q Consensus 13 ~LVLDLD~TLihs~~ 27 (282)
.+++|+||||+.+..
T Consensus 3 ~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 3 TLLFDLDDTILDFQA 17 (224)
T ss_pred EEEEcCcCcccccch
Confidence 689999999999875
No 211
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=67.30 E-value=19 Score=33.40 Aligned_cols=118 Identities=12% Similarity=0.134 Sum_probs=70.1
Q ss_pred hcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCc--eEEEEc
Q 041003 7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMY--DIYLCT 84 (282)
Q Consensus 7 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~y--ei~i~T 84 (282)
+++-...||=|||.|.+||--...........+ ....--+.=||+..|++.+.+.- .++--|
T Consensus 157 ~~~a~igiISDiDDTV~~T~V~~~~r~~~~s~~----------------l~~~tr~~ipGV~~~yr~l~~~~~apvfYvS 220 (373)
T COG4850 157 LNRAGIGIISDIDDTVKVTGVTEGPRKAGRSLL----------------LHALTRQVIPGVSAWYRALTNLGDAPVFYVS 220 (373)
T ss_pred ecccceeeeeccccceEecccccchHHHHHHhh----------------hcccccCCCCCHHHHHHHHHhcCCCCeEEec
Confidence 456677899999999999975421110111111 01112345699999999998776 566666
Q ss_pred CCcHHHHHHHHhhhcCCCcccccccEEEccCCCC----------Cceeccccccc--cCCceEEEcCChh
Q 041003 85 TRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE----------KGKKSGDLVLR--QEWGVVIVDDTEK 142 (282)
Q Consensus 85 ~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~----------~~~KdL~~l~~--~~~~vvivDd~~~ 142 (282)
+|.-..-...-+.|+-.+ ||.+-+|.|+.... +..-.|..+++ +..+.|+|-|+.+
T Consensus 221 nSPw~~f~~L~efi~~~~--~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE 288 (373)
T COG4850 221 NSPWQLFPTLQEFITNRN--FPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGE 288 (373)
T ss_pred CChhHhHHHHHHHHhcCC--CCCCchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCC
Confidence 776667777778887554 33344455654210 12224443332 4566777777764
No 212
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=67.20 E-value=3.2 Score=35.20 Aligned_cols=14 Identities=14% Similarity=0.282 Sum_probs=12.7
Q ss_pred eEEEeCCCceeeee
Q 041003 13 HLVLDLDQTLPHAV 26 (282)
Q Consensus 13 ~LVLDLD~TLihs~ 26 (282)
.+++||||||+++.
T Consensus 4 ~viFDldGtL~d~~ 17 (211)
T TIGR02247 4 AVIFDFGGVLLPSP 17 (211)
T ss_pred EEEEecCCceecCH
Confidence 68999999999974
No 213
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=66.73 E-value=8.7 Score=33.10 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=32.9
Q ss_pred EEecccHHHHHH-HHh-cCceEEEEcCCcHHHHHHHHhh
Q 041003 61 VKVRSYIRKFLK-KAS-KMYDIYLCTTRIRSYAMMMAKL 97 (282)
Q Consensus 61 v~~RP~l~~FL~-~~~-~~yei~i~T~~~~~Ya~~v~~~ 97 (282)
+..+||+.+.|+ .+. +-..++|-|++...|++++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 367999999996 676 6899999999999999999976
No 214
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=65.12 E-value=15 Score=36.56 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=37.0
Q ss_pred EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCC
Q 041003 60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPK 101 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~ 101 (282)
.-..||++.++++++.+ .++++|-|...+.+|+.+++.+.-+
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 35689999999999975 5999999999999999999998653
No 215
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=64.12 E-value=16 Score=30.45 Aligned_cols=77 Identities=18% Similarity=0.027 Sum_probs=54.4
Q ss_pred EEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCcee----ccccccccCCc
Q 041003 59 FLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKK----SGDLVLRQEWG 133 (282)
Q Consensus 59 ~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~K----dL~~l~~~~~~ 133 (282)
..-.+||++.++|+++.+. +.++|.|......|..+.+.+.-... .++++..+. +.-| =++.+..+.+.
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~-----~v~a~~~~k-P~~k~~~~~i~~l~~~~~~ 197 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDS-----IVFARVIGK-PEPKIFLRIIKELQVKPGE 197 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSE-----EEEESHETT-THHHHHHHHHHHHTCTGGG
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccccc-----ccccccccc-ccchhHHHHHHHHhcCCCE
Confidence 4457899999999999876 89999999999999999999876432 223332111 1112 22334445669
Q ss_pred eEEEcCCh
Q 041003 134 VVIVDDTE 141 (282)
Q Consensus 134 vvivDd~~ 141 (282)
|++|-|..
T Consensus 198 v~~vGDg~ 205 (215)
T PF00702_consen 198 VAMVGDGV 205 (215)
T ss_dssp EEEEESSG
T ss_pred EEEEccCH
Confidence 99999886
No 216
>PRK09449 dUMP phosphatase; Provisional
Probab=63.97 E-value=3.4 Score=35.40 Aligned_cols=46 Identities=2% Similarity=-0.154 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHH
Q 041003 209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQ 262 (282)
Q Consensus 209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~ 262 (282)
|....+...++.+|.. +.-..++.+ +....-+..|++.|++.|...
T Consensus 151 P~p~~~~~~~~~~~~~------~~~~~~~vg--D~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 151 PDVAIFDYALEQMGNP------DRSRVLMVG--DNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCHHHHHHHHHHcCCC------CcccEEEEc--CCcHHHHHHHHHCCCcEEEEC
Confidence 5566667777777631 112244444 211134667888888766543
No 217
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=63.62 E-value=9.9 Score=33.61 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=33.5
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHH-HHhcCceEEEEcCCcHH
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLK-KASKMYDIYLCTTRIRS 89 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~-~~~~~yei~i~T~~~~~ 89 (282)
+..|+-|||+||+ . + ... -+.-+.++|+ ......-+++-|.-+.+
T Consensus 2 ~~ll~sDlD~Tl~----~---~--~~~-------------------------~~~~l~~~l~~~~~~~~~~v~~TGRs~~ 47 (247)
T PF05116_consen 2 PRLLASDLDGTLI----D---G--DDE-------------------------ALARLEELLEQQARPEILFVYVTGRSLE 47 (247)
T ss_dssp SEEEEEETBTTTB----H---C--HHH-------------------------HHHHHHHHHHHHHCCGEEEEEE-SS-HH
T ss_pred CEEEEEECCCCCc----C---C--CHH-------------------------HHHHHHHHHHHhhCCCceEEEECCCCHH
Confidence 6789999999999 1 1 000 1244667777 44555666677777777
Q ss_pred HHHHHHhhh
Q 041003 90 YAMMMAKLL 98 (282)
Q Consensus 90 Ya~~v~~~l 98 (282)
=+..+++..
T Consensus 48 ~~~~~~~~~ 56 (247)
T PF05116_consen 48 SVLRLLREY 56 (247)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 777777653
No 218
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=63.42 E-value=4 Score=34.93 Aligned_cols=17 Identities=24% Similarity=0.129 Sum_probs=14.0
Q ss_pred CeeEEEeCCCceeeeec
Q 041003 11 KLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~ 27 (282)
...+++|+||||+.+..
T Consensus 4 ~~~viFD~DGTL~d~~~ 20 (221)
T PRK10563 4 IEAVFFDCDGTLVDSEV 20 (221)
T ss_pred CCEEEECCCCCCCCChH
Confidence 34789999999998754
No 219
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=62.84 E-value=14 Score=35.01 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=35.3
Q ss_pred CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHH-hcCceEEEEcCCc
Q 041003 10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKA-SKMYDIYLCTTRI 87 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~-~~~yei~i~T~~~ 87 (282)
+....-+|+|+|||.+.... .|......+.+..+|+-.. |+++ .+-|-++|+|+..
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~---------------------vf~~~~~dw~~l~~~vp~K-lktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGK---------------------VFPKGSMDWRILFPEVPSK-LKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CcceEEEecCCceeecCCcc---------------------eeeccCccceeeccccchh-hhhhccCCeEEEEEeccc
Confidence 44567899999999997531 1222233444445555544 4455 5679999999854
No 220
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=62.16 E-value=3.8 Score=35.54 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.1
Q ss_pred eeEEEeCCCceeeeecc
Q 041003 12 LHLVLDLDQTLPHAVDI 28 (282)
Q Consensus 12 l~LVLDLD~TLihs~~~ 28 (282)
..+++|+|||||.|...
T Consensus 3 ~avIFD~DGvLvDse~~ 19 (221)
T COG0637 3 KAVIFDMDGTLVDSEPL 19 (221)
T ss_pred cEEEEcCCCCcCcchHH
Confidence 35799999999999653
No 221
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=61.56 E-value=4.7 Score=38.25 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=15.6
Q ss_pred CCCeeEEEeCCCceeeeec
Q 041003 9 QKKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~ 27 (282)
.+-+.+++|+||||+.|..
T Consensus 129 ~~~~~VIFDlDGTLIDS~~ 147 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDNP 147 (381)
T ss_pred CCCCEEEEcCcCcceeCHH
Confidence 3456889999999999864
No 222
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=61.07 E-value=12 Score=30.73 Aligned_cols=39 Identities=5% Similarity=0.024 Sum_probs=32.8
Q ss_pred ecccHH----HHHHHH-hcCceEEEEcCCcHHHHHHHHhhhcCC
Q 041003 63 VRSYIR----KFLKKA-SKMYDIYLCTTRIRSYAMMMAKLLNPK 101 (282)
Q Consensus 63 ~RP~l~----~FL~~~-~~~yei~i~T~~~~~Ya~~v~~~ldp~ 101 (282)
++|++. +|++++ ++.++++|-|+|...++.++++.+.-.
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 345555 999998 578999999999999999999877543
No 223
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=60.98 E-value=3.8 Score=39.68 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.1
Q ss_pred eeEEEeCCCceeeeec
Q 041003 12 LHLVLDLDQTLPHAVD 27 (282)
Q Consensus 12 l~LVLDLD~TLihs~~ 27 (282)
..+++||||||++|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 4789999999999975
No 224
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=60.27 E-value=4.8 Score=33.87 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=10.2
Q ss_pred eEEEeCCCcee
Q 041003 13 HLVLDLDQTLP 23 (282)
Q Consensus 13 ~LVLDLD~TLi 23 (282)
.+++|+||||+
T Consensus 3 ~v~FD~DGTL~ 13 (205)
T PRK13582 3 IVCLDLEGVLV 13 (205)
T ss_pred EEEEeCCCCCh
Confidence 57999999999
No 225
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=58.85 E-value=5.6 Score=34.20 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=14.7
Q ss_pred CeeEEEeCCCceeeeec
Q 041003 11 KLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~ 27 (282)
|.++++|+||||+.+..
T Consensus 3 ~~~vifDfDgTi~~~d~ 19 (219)
T PRK09552 3 SIQIFCDFDGTITNNDN 19 (219)
T ss_pred CcEEEEcCCCCCCcchh
Confidence 55899999999998865
No 226
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=58.48 E-value=12 Score=37.04 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=53.4
Q ss_pred EEEEecccHHHHHHHHhcC-c-eEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEE
Q 041003 59 FLVKVRSYIRKFLKKASKM-Y-DIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVI 136 (282)
Q Consensus 59 ~~v~~RP~l~~FL~~~~~~-y-ei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvi 136 (282)
..-..|||+.+.++++.+. + +++|-|+..+.+|..+++.+.-.. +| ..+.. ....+-++.+....+.+++
T Consensus 359 ~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f--~~~~p-----~~K~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 359 LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VH--AELLP-----EDKLEIVKELREKYGPVAM 430 (536)
T ss_pred EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hh--hccCc-----HHHHHHHHHHHhcCCEEEE
Confidence 3456899999999999764 7 999999999999999999987654 34 22110 0011223333445578999
Q ss_pred EcCChh
Q 041003 137 VDDTEK 142 (282)
Q Consensus 137 vDd~~~ 142 (282)
|-|...
T Consensus 431 vGDg~n 436 (536)
T TIGR01512 431 VGDGIN 436 (536)
T ss_pred EeCCHH
Confidence 998863
No 227
>PLN02954 phosphoserine phosphatase
Probab=57.96 E-value=5.9 Score=33.88 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=14.0
Q ss_pred CeeEEEeCCCceeeeec
Q 041003 11 KLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~ 27 (282)
...+++|+||||+.+..
T Consensus 12 ~k~viFDfDGTL~~~~~ 28 (224)
T PLN02954 12 ADAVCFDVDSTVCVDEG 28 (224)
T ss_pred CCEEEEeCCCcccchHH
Confidence 45778999999999754
No 228
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=57.23 E-value=46 Score=27.66 Aligned_cols=101 Identities=15% Similarity=0.075 Sum_probs=57.0
Q ss_pred CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHH-HHHHHHhcCceEEEEcCCcHH
Q 041003 11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIR-KFLKKASKMYDIYLCTTRIRS 89 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~-~FL~~~~~~yei~i~T~~~~~ 89 (282)
=..+|+|.||||-.-+..-... +....-...|-|.- ..|+ .+.+.+.|.|++...
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~----------------------g~~~~~~~~~D~~~~~~L~--~~Gi~laIiT~k~~~ 62 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDE----------------------GIESRNFDIKDGMGVIVLQ--LCGIDVAIITSKKSG 62 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCC----------------------CcEEEEEecchHHHHHHHH--HCCCEEEEEECCCcH
Confidence 3578999999998764321000 01111233444432 2222 356999999999999
Q ss_pred HHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcCCh
Q 041003 90 YAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTE 141 (282)
Q Consensus 90 Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd~~ 141 (282)
++..+++.+.-. .+| .. + .+.. .....-++.++-+.++++.|.|+.
T Consensus 63 ~~~~~l~~lgi~-~~f-~~-~--kpkp-~~~~~~~~~l~~~~~ev~~iGD~~ 108 (169)
T TIGR02726 63 AVRHRAEELKIK-RFH-EG-I--KKKT-EPYAQMLEEMNISDAEVCYVGDDL 108 (169)
T ss_pred HHHHHHHHCCCc-EEE-ec-C--CCCH-HHHHHHHHHcCcCHHHEEEECCCH
Confidence 999999999655 345 21 1 0000 011112223334567888888887
No 229
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=57.04 E-value=13 Score=32.64 Aligned_cols=41 Identities=7% Similarity=0.225 Sum_probs=34.3
Q ss_pred EEecccHHHHHHHHhcC--ceEEEEcCCcHHHHHHHHhhhcCC
Q 041003 61 VKVRSYIRKFLKKASKM--YDIYLCTTRIRSYAMMMAKLLNPK 101 (282)
Q Consensus 61 v~~RP~l~~FL~~~~~~--yei~i~T~~~~~Ya~~v~~~ldp~ 101 (282)
+-.-||+-+-++.+++. ||+.|-|.+..-+.+.++++.+-.
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~ 125 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH 125 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH
Confidence 44679999988888753 899999999999999999987543
No 230
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=56.68 E-value=5.7 Score=34.11 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=10.8
Q ss_pred EEEeCCCceeee
Q 041003 14 LVLDLDQTLPHA 25 (282)
Q Consensus 14 LVLDLD~TLihs 25 (282)
.++|||+|||..
T Consensus 4 a~FDlD~TLi~~ 15 (203)
T TIGR02137 4 ACLDLEGVLVPE 15 (203)
T ss_pred EEEeCCcccHHH
Confidence 799999999965
No 231
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=56.52 E-value=21 Score=31.78 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=31.1
Q ss_pred EEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhh
Q 041003 59 FLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLL 98 (282)
Q Consensus 59 ~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~l 98 (282)
.-+.+|.|..+|++.+.+. -=+.|||+|.-.-.+.+++.-
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 3578999999999999876 579999999999999999885
No 232
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=55.40 E-value=38 Score=29.29 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=36.1
Q ss_pred EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCC
Q 041003 61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPK 101 (282)
Q Consensus 61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~ 101 (282)
..+-||++|+-..+. +...+++-|-|-+..+.+|.+.|+-.
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIP 128 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCc
Confidence 347799999999996 56999999999999999999999743
No 233
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=54.88 E-value=18 Score=36.76 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=57.8
Q ss_pred cchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecc------cCCCccEEEEcCC----CCCcHHHH----HH
Q 041003 186 GKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDV------YNLSVAQVVSVSS----RLGIKGHR----LA 251 (282)
Q Consensus 186 ~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~------~~~~vTHlV~~~~----~~~t~K~~----~A 251 (282)
...+.++|.|..++|-|.+... ....+-++....||++... .+...|-++.... .....|.. .|
T Consensus 581 ~s~~~kLf~gl~~~~~g~fs~~--p~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~~~~~~~~~~~~~~~~~k~~~~ea~~ 658 (684)
T KOG4362|consen 581 ESYKPKLFEGLKFYFVGDFSNP--PKEQLQELVHLAGGTILQVPRVAYSDKKKSTIVVLSEKPVLDSILWQKVNDAEALA 658 (684)
T ss_pred cccCcchhcCCcceeecccccC--cHHHHHHHHhhcCcceeeccCcccccccccceeEeecccCCCchhhhhhccHHHHH
Confidence 3346789999999999987664 4677888999999987432 2333444444321 12233332 23
Q ss_pred HHCCCceecHHHHHHHHHhCCcC
Q 041003 252 EQHNKFLVHPQWIYAAYYLWSRQ 274 (282)
Q Consensus 252 ~~~gi~IV~~~WL~~c~~~~~r~ 274 (282)
...+-..|+..|+.+++...+..
T Consensus 659 ~s~~a~~~~~~wvl~s~a~~~~~ 681 (684)
T KOG4362|consen 659 LSQRARAVSSSWVLDSIAGYQIL 681 (684)
T ss_pred HhcCCCccchhhhhcchhceeee
Confidence 44578999999999998766543
No 234
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=54.70 E-value=5.7 Score=34.46 Aligned_cols=12 Identities=42% Similarity=0.589 Sum_probs=10.7
Q ss_pred EEEeCCCceeee
Q 041003 14 LVLDLDQTLPHA 25 (282)
Q Consensus 14 LVLDLD~TLihs 25 (282)
++.||||||+++
T Consensus 2 i~~DlDgTLl~~ 13 (236)
T TIGR02471 2 IITDLDNTLLGD 13 (236)
T ss_pred eEEeccccccCC
Confidence 689999999984
No 235
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=54.47 E-value=27 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=40.4
Q ss_pred eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHH
Q 041003 13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYA 91 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya 91 (282)
++|-|+|||+--|....+.. .+-+.. +.+||+-++...+.+. |.+.=-|+-.-.-|
T Consensus 1 VVvsDIDGTiT~SD~~G~i~--------------------~~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa 57 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHIL--------------------PILGKD---WTHPGAAELYRKIADNGYKILYLTARPIGQA 57 (157)
T ss_pred CEEEeccCCcCccchhhhhh--------------------hccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHHHH
Confidence 46899999998885321111 011222 6899999999999865 77766666555555
Q ss_pred HHHHhhh
Q 041003 92 MMMAKLL 98 (282)
Q Consensus 92 ~~v~~~l 98 (282)
...-+.|
T Consensus 58 ~~Tr~~L 64 (157)
T PF08235_consen 58 NRTRSWL 64 (157)
T ss_pred HHHHHHH
Confidence 5555444
No 236
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=52.69 E-value=8.4 Score=32.77 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=14.8
Q ss_pred CCeeEEEeCCCceeeeec
Q 041003 10 KKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~ 27 (282)
....+++|+||||++...
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 345789999999999854
No 237
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=51.80 E-value=25 Score=36.72 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=45.3
Q ss_pred hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC--ceEEEE
Q 041003 6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM--YDIYLC 83 (282)
Q Consensus 6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~--yei~i~ 83 (282)
..+.++..|+||.||||+.-...+. . + .-+..-|++.+-|+.|++. -.++|-
T Consensus 502 y~~a~~rll~LDyDGTL~~~~~~~~-~-p------------------------~~a~p~~~l~~~L~~L~~d~~~~V~Iv 555 (797)
T PLN03063 502 YSKSNNRLLILGFYGTLTEPRNSQI-K-E------------------------MDLGLHPELKETLKALCSDPKTTVVVL 555 (797)
T ss_pred HHhccCeEEEEecCccccCCCCCcc-c-c------------------------ccCCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 3466788999999999994322110 0 0 0123458999999999864 678899
Q ss_pred cCCcHHHHHHHHhh
Q 041003 84 TTRIRSYAMMMAKL 97 (282)
Q Consensus 84 T~~~~~Ya~~v~~~ 97 (282)
|--.++-.++.+..
T Consensus 556 SGR~~~~L~~~~~~ 569 (797)
T PLN03063 556 SRSGKDILDKNFGE 569 (797)
T ss_pred eCCCHHHHHHHhCC
Confidence 88777777766653
No 238
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=51.25 E-value=31 Score=33.55 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=35.4
Q ss_pred ceeEEEEecccHHHHHHHHhcCc-eEEEEcCCcHHHHHHHHhhh-cC
Q 041003 56 SELFLVKVRSYIRKFLKKASKMY-DIYLCTTRIRSYAMMMAKLL-NP 100 (282)
Q Consensus 56 ~~~~~v~~RP~l~~FL~~~~~~y-ei~i~T~~~~~Ya~~v~~~l-dp 100 (282)
+..-||.+-|.+..+|+.+.+.- .+++-|+|.-.|++.+++.+ ++
T Consensus 177 dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 177 DPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGP 223 (448)
T ss_dssp TCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGC
T ss_pred CHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCC
Confidence 34567888999999999999876 89999999999999999876 44
No 239
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=50.62 E-value=8.6 Score=32.38 Aligned_cols=53 Identities=11% Similarity=-0.052 Sum_probs=29.9
Q ss_pred eccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHH
Q 041003 201 SRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQW 263 (282)
Q Consensus 201 sg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~W 263 (282)
+......+|....+...++.+|. +++-+.+| . + ....+..|++.|++.|...+
T Consensus 134 s~~~~~~KP~p~~~~~~~~~~~~------~p~~~l~v-g--D-~~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 134 SQDLGMRKPEARIYQHVLQAEGF------SAADAVFF-D--D-NADNIEAANALGITSILVTD 186 (199)
T ss_pred ecccCCCCCCHHHHHHHHHHcCC------ChhHeEEe-C--C-CHHHHHHHHHcCCEEEEecC
Confidence 33333333556666777788864 23223222 3 1 23447778889988776554
No 240
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=50.60 E-value=30 Score=30.58 Aligned_cols=43 Identities=5% Similarity=0.135 Sum_probs=37.0
Q ss_pred EEEecccHHHHHHHHh---cCceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003 60 LVKVRSYIRKFLKKAS---KMYDIYLCTTRIRSYAMMMAKLLNPKC 102 (282)
Q Consensus 60 ~v~~RP~l~~FL~~~~---~~yei~i~T~~~~~Ya~~v~~~ldp~~ 102 (282)
-+..-||..+|++.++ ..+|++|-|.|..-|-+.+++.-+-..
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~ 114 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD 114 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc
Confidence 3678999999999994 379999999999999999998866543
No 241
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=50.42 E-value=15 Score=38.63 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=37.5
Q ss_pred hcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc--CceEEEEc
Q 041003 7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK--MYDIYLCT 84 (282)
Q Consensus 7 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~--~yei~i~T 84 (282)
.+.++..|+||+||||+..... . ...-|++.+-|++|++ .-.++|-|
T Consensus 592 ~~~~~rlI~LDyDGTLlp~~~~---~----------------------------~~p~~~~~~~L~~L~~d~g~~VaIvS 640 (854)
T PLN02205 592 KRTTTRAILLDYDGTLMPQASI---D----------------------------KSPSSKSIDILNTLCRDKNNMVFIVS 640 (854)
T ss_pred HhhcCeEEEEecCCcccCCccc---c----------------------------CCCCHHHHHHHHHHHhcCCCEEEEEe
Confidence 4567888999999999944311 0 0123678888888754 35566666
Q ss_pred CCcHHHHHHHHhh
Q 041003 85 TRIRSYAMMMAKL 97 (282)
Q Consensus 85 ~~~~~Ya~~v~~~ 97 (282)
.-...-.+.....
T Consensus 641 GR~~~~L~~~f~~ 653 (854)
T PLN02205 641 ARSRKTLADWFSP 653 (854)
T ss_pred CCCHHHHHHHhCC
Confidence 5555554444433
No 242
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=48.45 E-value=23 Score=35.27 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=51.8
Q ss_pred EEEEecccHHHHHHHHhc-C-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEE
Q 041003 59 FLVKVRSYIRKFLKKASK-M-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVI 136 (282)
Q Consensus 59 ~~v~~RP~l~~FL~~~~~-~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvi 136 (282)
+....|||+.+.|+++.+ . ++++|-|...+.+|.++++.++-.. +| .++... ...+-++.+.....++++
T Consensus 381 ~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f--~~~~p~-----~K~~~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 381 LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VH--AELLPE-----DKLAIVKELQEEGGVVAM 452 (556)
T ss_pred ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-ee--ccCCHH-----HHHHHHHHHHHcCCEEEE
Confidence 346799999999999965 5 8999999999999999999997653 44 222100 001122223334457888
Q ss_pred EcCCh
Q 041003 137 VDDTE 141 (282)
Q Consensus 137 vDd~~ 141 (282)
|-|..
T Consensus 453 vGDg~ 457 (556)
T TIGR01525 453 VGDGI 457 (556)
T ss_pred EECCh
Confidence 88876
No 243
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=47.73 E-value=33 Score=36.46 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=49.7
Q ss_pred chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC--ceEEE
Q 041003 5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM--YDIYL 82 (282)
Q Consensus 5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~--yei~i 82 (282)
++.+.++..|+||.||||+--...|.... .. -..+-+..-|++.+-|+.|+.. ..++|
T Consensus 585 ~y~~a~~RLlfLDyDGTLap~~~~P~~~~----------~~----------~~~~~a~p~p~l~~~L~~L~~dp~n~VaI 644 (934)
T PLN03064 585 RYLQSNNRLLILGFNATLTEPVDTPGRRG----------DQ----------IKEMELRLHPELKEPLRALCSDPKTTIVV 644 (934)
T ss_pred HHHhccceEEEEecCceeccCCCCccccc----------cc----------ccccccCCCHHHHHHHHHHHhCCCCeEEE
Confidence 34467788999999999987544332110 00 0011233457899999999864 78999
Q ss_pred EcCCcHHHHHHHHhhh
Q 041003 83 CTTRIRSYAMMMAKLL 98 (282)
Q Consensus 83 ~T~~~~~Ya~~v~~~l 98 (282)
-|--.+.-.+.....+
T Consensus 645 VSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 645 LSGSDRSVLDENFGEF 660 (934)
T ss_pred EeCCCHHHHHHHhCCC
Confidence 9988888877777554
No 244
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=47.43 E-value=25 Score=30.50 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=29.9
Q ss_pred EEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCce--EEEEcCCcHHHHH
Q 041003 15 VLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYD--IYLCTTRIRSYAM 92 (282)
Q Consensus 15 VLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~ye--i~i~T~~~~~Ya~ 92 (282)
.||.||||.--...|.. ...-|++.+.|+.|+.... ++|-|.-...-.+
T Consensus 1 ~lDyDGTL~p~~~~p~~-----------------------------~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~ 51 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDA-----------------------------AVPPPELRELLRALAADPNNTVAIVSGRSLDDLE 51 (235)
T ss_dssp EEE-TTTSS---S-GGG---------------------------------HHHHHHHHHHHHHSE--EEEE-SS-HHHHH
T ss_pred CcccCCccCCCCCCccc-----------------------------cCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhH
Confidence 48999999865543211 2356899999999998776 8888877776633
Q ss_pred H
Q 041003 93 M 93 (282)
Q Consensus 93 ~ 93 (282)
.
T Consensus 52 ~ 52 (235)
T PF02358_consen 52 R 52 (235)
T ss_dssp H
T ss_pred H
Confidence 3
No 245
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=47.02 E-value=11 Score=32.45 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=14.6
Q ss_pred CeeEEEeCCCceeeeecc
Q 041003 11 KLHLVLDLDQTLPHAVDI 28 (282)
Q Consensus 11 kl~LVLDLD~TLihs~~~ 28 (282)
+...++|+||||.+..+.
T Consensus 5 ~~la~FDfDgTLt~~ds~ 22 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQDMF 22 (210)
T ss_pred CcEEEEcCCCCCccCccH
Confidence 456799999999998653
No 246
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=43.67 E-value=29 Score=32.31 Aligned_cols=86 Identities=14% Similarity=0.046 Sum_probs=50.9
Q ss_pred EEEEecc-cHHHHHHHHhc------CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccC--------CCC----C
Q 041003 59 FLVKVRS-YIRKFLKKASK------MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED--------FKE----K 119 (282)
Q Consensus 59 ~~v~~RP-~l~~FL~~~~~------~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~--------~~~----~ 119 (282)
+.++-|| ++++-|+.+.+ .++|+|+-.|...-+..+++...-.-+++ .+.-++-.. |-. +
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i-~~~~~~~~~~~~~~~~~~y~~ia~h 84 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHI-QHPPISIKNVNPPHKFQGYYRIARH 84 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEE-EcccccccccCcccccchhhHHHHH
Confidence 4678999 69999999864 48999999998776566665442111122 111010000 100 2
Q ss_pred ceeccccccc--cCCceEEEcCChhhhh
Q 041003 120 GKKSGDLVLR--QEWGVVIVDDTEKVWK 145 (282)
Q Consensus 120 ~~KdL~~l~~--~~~~vvivDd~~~~~~ 145 (282)
+..-|+.++. +.+.+||+||.-..-.
T Consensus 85 yk~aln~vF~~~~~~~vIILEDDl~~sP 112 (334)
T cd02514 85 YKWALTQTFNLFGYSFVIILEDDLDIAP 112 (334)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCccCH
Confidence 2235555553 4789999999875544
No 247
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=42.19 E-value=18 Score=30.83 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=60.7
Q ss_pred cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHH------HHHHHHhcC
Q 041003 4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIR------KFLKKASKM 77 (282)
Q Consensus 4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~------~FL~~~~~~ 77 (282)
++|-.+++.++-+|+|.|++.|+.--..+ .+ +.-||-. .|.+.+.+.
T Consensus 56 ~SLeG~~Pi~VsFDIDDTvLFsSp~F~~G------------------------k~---~~sPgs~DyLknq~FW~~vn~g 108 (237)
T COG3700 56 NSLEGRPPIAVSFDIDDTVLFSSPGFWRG------------------------KK---YFSPGSEDYLKNQVFWEKVNNG 108 (237)
T ss_pred hhhcCCCCeeEeeccCCeeEecccccccC------------------------cc---ccCCChHHhhcCHHHHHHHhcC
Confidence 57788899999999999999997531111 00 1234433 455566554
Q ss_pred ceEEEEcCCcHHHHHHHHhhhcCCC--cccccccEEEccCCC-CCceecccccc--ccCCceEEEcCCh
Q 041003 78 YDIYLCTTRIRSYAMMMAKLLNPKC--EYHISSRLITREDFK-EKGKKSGDLVL--RQEWGVVIVDDTE 141 (282)
Q Consensus 78 yei~i~T~~~~~Ya~~v~~~ldp~~--~~f~~~rv~~r~~~~-~~~~KdL~~l~--~~~~~vvivDd~~ 141 (282)
.+=+ +=.++||.+++++=-..| .+| +-.|.... ..-.|.|.+-+ .++.-|++.-|.+
T Consensus 109 ~D~~---SIPKevA~qLI~MHq~RGD~i~F----vTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~ 170 (237)
T COG3700 109 WDEF---SIPKEVARQLIDMHQRRGDAIYF----VTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKP 170 (237)
T ss_pred Cccc---cchHHHHHHHHHHHHhcCCeEEE----EecCCCCcccccchhHHhhcccCCCcceeeccCCC
Confidence 4322 127899999888765544 234 22232221 12335554433 3667788888887
No 248
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=40.31 E-value=31 Score=31.09 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=25.5
Q ss_pred hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEe
Q 041003 189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACT 226 (282)
Q Consensus 189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~ 226 (282)
+.++|+|.+|..+-.+. .+...+.+....+||.|.
T Consensus 37 ~~kPl~G~rIa~cLHle---~kTA~L~~tL~a~GAeV~ 71 (268)
T PF05221_consen 37 AEKPLKGARIAGCLHLE---AKTAVLAETLKALGAEVR 71 (268)
T ss_dssp TT-TTTTEEEEEES--S---HHHHHHHHHHHHTTEEEE
T ss_pred ccCCCCCCEEEEEEech---HHHHHHHHHHHHcCCeEE
Confidence 35799999998764432 346778899999999986
No 249
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=38.83 E-value=34 Score=29.93 Aligned_cols=85 Identities=8% Similarity=-0.008 Sum_probs=58.6
Q ss_pred EEEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEcc--CCCC------Cceeccccccc
Q 041003 59 FLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRE--DFKE------KGKKSGDLVLR 129 (282)
Q Consensus 59 ~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~--~~~~------~~~KdL~~l~~ 129 (282)
-..+.=||+.+++..|.. --.+.++|.+.+..++.-++.+.---..| +.-++ -+ ++.. .+.+-.++++.
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f-~~~v~-~d~~~v~~gKP~Pdi~l~A~~~l~~ 166 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNF-SHVVL-GDDPEVKNGKPDPDIYLKAAKRLGV 166 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhc-CCCee-cCCccccCCCCCchHHHHHHHhcCC
Confidence 347788999999999975 47899999998888887776664222245 33333 22 1211 34666677776
Q ss_pred cC-CceEEEcCChhhhh
Q 041003 130 QE-WGVVIVDDTEKVWK 145 (282)
Q Consensus 130 ~~-~~vvivDd~~~~~~ 145 (282)
+. +.+++.+|.+....
T Consensus 167 ~~~~k~lVfeds~~Gv~ 183 (222)
T KOG2914|consen 167 PPPSKCLVFEDSPVGVQ 183 (222)
T ss_pred CCccceEEECCCHHHHH
Confidence 66 99999999995554
No 250
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=38.60 E-value=38 Score=24.61 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.7
Q ss_pred CCCeeEEEeCCCceeeeec
Q 041003 9 QKKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~ 27 (282)
....+|||+-|||.|.+..
T Consensus 38 ~~~~~lvL~eDGTeVddEe 56 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CCCeEEEEeCCCcEEccHH
Confidence 4678999999999997743
No 251
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=37.77 E-value=18 Score=30.38 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=12.8
Q ss_pred CCeeEEEeCCCceeeeec
Q 041003 10 KKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~ 27 (282)
+|+.|.+|+||||.....
T Consensus 1 ~~i~I~iDiDgVLad~~~ 18 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADFNS 18 (191)
T ss_dssp --EEEEEESBTTTB-HHH
T ss_pred CCcEEEEECCCCCcccHH
Confidence 466799999999998753
No 252
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=37.76 E-value=37 Score=24.85 Aligned_cols=19 Identities=37% Similarity=0.350 Sum_probs=15.8
Q ss_pred CCCeeEEEeCCCceeeeec
Q 041003 9 QKKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~ 27 (282)
....+|||+=|||.|.+..
T Consensus 37 ~~~~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 37 SGVLTLVLEEDGTAVDSED 55 (81)
T ss_pred CCceEEEEecCCCEEccHH
Confidence 4568999999999998754
No 253
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=37.12 E-value=2e+02 Score=23.69 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=42.8
Q ss_pred eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHHh
Q 041003 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYL 270 (282)
Q Consensus 191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~ 270 (282)
..+.|+.|+||+--.. ..+.+.+++..++..-. . + -||++ ...--..|...|...+++.++..-+..
T Consensus 63 ~~~~gi~Vvft~~~~t---AD~~Ie~~v~~~~~~~~-~----v-~VVTS----D~~iq~~~~~~GA~~iss~ef~~~l~~ 129 (166)
T PF05991_consen 63 EEYGGIEVVFTKEGET---ADDYIERLVRELKNRPR-Q----V-TVVTS----DREIQRAARGRGAKRISSEEFLRELKA 129 (166)
T ss_pred eeeCceEEEECCCCCC---HHHHHHHHHHHhccCCC-e----E-EEEeC----CHHHHHHHhhCCCEEEcHHHHHHHHHH
Confidence 3568999999975222 35788889988865110 1 1 23333 222334567789999999998875543
No 254
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=35.59 E-value=45 Score=24.00 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.2
Q ss_pred CCeeEEEeCCCceeeeec
Q 041003 10 KKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~ 27 (282)
...+|||+=|||.|.+..
T Consensus 37 ~~~~l~L~eDGT~VddEe 54 (74)
T smart00266 37 SPVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CCcEEEEecCCcEEccHH
Confidence 478999999999997753
No 255
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=34.44 E-value=44 Score=24.27 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=14.7
Q ss_pred CCeeEEEeCCCceeeee
Q 041003 10 KKLHLVLDLDQTLPHAV 26 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~ 26 (282)
...+|||+-|||.|...
T Consensus 39 ~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 39 EPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp STCEEEETTTTCBESSC
T ss_pred cCcEEEEeCCCcEEccH
Confidence 57789999999999864
No 256
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=33.75 E-value=67 Score=33.73 Aligned_cols=78 Identities=9% Similarity=-0.057 Sum_probs=52.3
Q ss_pred heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEe-cccCCCccEEEEcCCCCCcHHHHHHHH-CCCceecHHHHHHH
Q 041003 190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACT-DVYNLSVAQVVSVSSRLGIKGHRLAEQ-HNKFLVHPQWIYAA 267 (282)
Q Consensus 190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~-~~~~~~vTHlV~~~~~~~t~K~~~A~~-~gi~IV~~~WL~~c 267 (282)
...|+|..++..|... +....+.+.-..+|+... ..--+.+||+|+. .....++ .. .+-...+++|+-+|
T Consensus 45 ~s~fs~is~~~ngs~~---e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~--~l~a~~v---k~~~~~~~~~~e~iie~ 116 (1016)
T KOG2093|consen 45 SSSFSGISISVNGSTD---ESANELKLQNMFHTGASAASYERSGTENIIAQ--GLPADLV---KGFTIPKHISIEWIIEC 116 (1016)
T ss_pred cceeeeeeeccCCccc---cchHHHhhhhhhcccccccccccccceeeecc--cchHHHh---ccccchhhhcHHHHHHH
Confidence 4678888888766532 335567777777777776 4455788999998 3211111 12 24578899999999
Q ss_pred HHhCCcCC
Q 041003 268 YYLWSRQV 275 (282)
Q Consensus 268 ~~~~~r~~ 275 (282)
++.+.-+.
T Consensus 117 ~~~~~~~~ 124 (1016)
T KOG2093|consen 117 CENGMDVG 124 (1016)
T ss_pred HhccCccc
Confidence 99876654
No 257
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=32.04 E-value=74 Score=30.38 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhHhhcccccCCCCCcccccccch-----hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEeccc
Q 041003 155 NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKI-----QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVY 229 (282)
Q Consensus 155 D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~-----r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~ 229 (282)
|.|-..+..-|.+||. .-.+| +|.++ ..|.|..--|+..|-+| ..++.|...+.||.+.++.
T Consensus 268 DAEW~Ii~~KL~ki~~------sGAnV--VLSkLpIGD~ATQyFAdrdiFCAGRV~-----~eDl~Rv~~acGGsi~tt~ 334 (543)
T KOG0361|consen 268 DAEWNIIYDKLDKIHE------SGANV--VLSKLPIGDLATQYFADRDIFCAGRVP-----EEDLNRVMQACGGSIQTTV 334 (543)
T ss_pred hHHHHHHHHHHHHHHh------cCCeE--EEecccchHHHHHHhhccCceecCcCC-----HHHHHHHHHhcCcchhhhh
Confidence 8888999999999996 33444 55543 56788888888888876 4689999999999998865
Q ss_pred C
Q 041003 230 N 230 (282)
Q Consensus 230 ~ 230 (282)
+
T Consensus 335 ~ 335 (543)
T KOG0361|consen 335 S 335 (543)
T ss_pred h
Confidence 4
No 258
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=31.92 E-value=49 Score=24.11 Aligned_cols=18 Identities=33% Similarity=0.148 Sum_probs=14.9
Q ss_pred CCeeEEEeCCCceeeeec
Q 041003 10 KKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~ 27 (282)
...+|||+=|||.|.+..
T Consensus 38 ~~~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 38 CISSLVLDEDGTGVDTEE 55 (79)
T ss_pred CccEEEEecCCcEEccHH
Confidence 458899999999997753
No 259
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=31.50 E-value=52 Score=24.04 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.1
Q ss_pred CCeeEEEeCCCceeeeec
Q 041003 10 KKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 10 ~kl~LVLDLD~TLihs~~ 27 (282)
...+|||+=|||.|.+..
T Consensus 41 ~~~~lvL~eDGT~VddEe 58 (80)
T cd06536 41 APITLVLAEDGTIVEDED 58 (80)
T ss_pred CceEEEEecCCcEEccHH
Confidence 468999999999997743
No 260
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=31.02 E-value=37 Score=32.21 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=35.3
Q ss_pred eecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcC
Q 041003 192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVS 240 (282)
Q Consensus 192 vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~ 240 (282)
+|.....++-|.-+. .+..+.+-+-.+||.+.+-++..|||+++.+
T Consensus 122 aFp~f~fY~dn~s~~---~khRvk~gf~~LGa~v~tfF~~~VThfiTrR 167 (468)
T COG5067 122 AFPAFKFYKDNKSGK---RKHRVKEGFCELGAVVFTFFEEHVTHFITRR 167 (468)
T ss_pred ccchhhhhhcCCCHH---HHHHHHHHHHHhhhhhheeeccceEEEEEee
Confidence 556666666554332 2566888999999999999999999999973
No 261
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=30.55 E-value=59 Score=23.63 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.7
Q ss_pred CCCeeEEEeCCCceeeeec
Q 041003 9 QKKLHLVLDLDQTLPHAVD 27 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~ 27 (282)
....+|||+=|||.|.+..
T Consensus 38 ~~~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 38 SGLVTLVLEEDGTVVDTEE 56 (78)
T ss_pred CCCcEEEEeCCCCEEccHH
Confidence 4468999999999998753
No 262
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=29.24 E-value=76 Score=30.79 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=46.8
Q ss_pred CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCccee-ecceeEEEEeccc-------HHHHHHHHhcCc--
Q 041003 9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFK-MASELFLVKVRSY-------IRKFLKKASKMY-- 78 (282)
Q Consensus 9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~v~~RP~-------l~~FL~~~~~~y-- 78 (282)
+.+..+|||+|.|..-+.-..+.. .+..|. .....--...|. ..|..+-..+||| ..+||+.+-+.+
T Consensus 137 ~~~~~i~LDiD~T~~~~~G~Qe~~-~~n~y~--g~~gY~PL~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~ 213 (448)
T PF13701_consen 137 KPPKEIVLDIDSTVDDVHGEQEGA-VFNTYY--GEDGYHPLVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQ 213 (448)
T ss_pred cccceEEEecccccccchhhcccc-cccccC--CCcccccceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhh
Confidence 456789999999974433221111 111110 001111112221 1355667899998 566666653322
Q ss_pred ---e-EEEEcCCcHHHHHHHHhhhcCCCc
Q 041003 79 ---D-IYLCTTRIRSYAMMMAKLLNPKCE 103 (282)
Q Consensus 79 ---e-i~i~T~~~~~Ya~~v~~~ldp~~~ 103 (282)
+ -+++=+-+--|...+++.++-.+.
T Consensus 214 ~~~~~~ILvR~DSgF~~~el~~~ce~~g~ 242 (448)
T PF13701_consen 214 RWPDTRILVRGDSGFASPELMDWCEAEGV 242 (448)
T ss_pred hCccceEEEEecCccCcHHHHHHHHhCCC
Confidence 2 234555555566667777766654
No 263
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=28.34 E-value=61 Score=24.23 Aligned_cols=36 Identities=8% Similarity=0.238 Sum_probs=29.5
Q ss_pred ecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhc
Q 041003 63 VRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLN 99 (282)
Q Consensus 63 ~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ld 99 (282)
.|-.|++.++.+.+-.++.+||.+. +|+..+.+.+.
T Consensus 6 ~~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~ 41 (94)
T cd02974 6 LKQQLKAYLERLENPVELVASLDDS-EKSAELLELLE 41 (94)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHH
Confidence 3556788888899999999999977 88888877763
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=28.19 E-value=31 Score=37.22 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.8
Q ss_pred eEEEeCCCceeeeecc
Q 041003 13 HLVLDLDQTLPHAVDI 28 (282)
Q Consensus 13 ~LVLDLD~TLihs~~~ 28 (282)
.+++||||||++|...
T Consensus 77 aVIFDlDGTLiDS~~~ 92 (1057)
T PLN02919 77 AVLFDMDGVLCNSEEP 92 (1057)
T ss_pred EEEECCCCCeEeChHH
Confidence 5899999999998653
No 265
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=27.55 E-value=32 Score=33.85 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=22.5
Q ss_pred ecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhh
Q 041003 63 VRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKL 97 (282)
Q Consensus 63 ~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ 97 (282)
+||...+-+++ .-+.+|-|++.+.|++++++.
T Consensus 111 l~~~a~~~~~~---~g~~vvVSASp~~~Vepfa~~ 142 (497)
T PLN02177 111 VHPETWRVFNS---FGKRYIITASPRIMVEPFVKT 142 (497)
T ss_pred cCHHHHHHHHh---CCCEEEEECCcHHHHHHHHHH
Confidence 55554443333 224599999999999999965
No 266
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=27.40 E-value=54 Score=23.81 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.8
Q ss_pred ceEEEEcCCcHHHHHHHHhhhcCC
Q 041003 78 YDIYLCTTRIRSYAMMMAKLLNPK 101 (282)
Q Consensus 78 yei~i~T~~~~~Ya~~v~~~ldp~ 101 (282)
.++.+|-+|+..|.+.|.+.|+.-
T Consensus 4 a~~SLYPmg~~dy~~~I~~~i~~~ 27 (81)
T PF07615_consen 4 AQFSLYPMGTDDYMDVILGAIDRL 27 (81)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHHC
T ss_pred EEEEecccCCccHHHHHHHHHHHH
Confidence 578999999999999999888644
No 267
>PHA03050 glutaredoxin; Provisional
Probab=25.25 E-value=96 Score=23.68 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=30.0
Q ss_pred HHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003 68 RKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKC 102 (282)
Q Consensus 68 ~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~ 102 (282)
.+|++++-+.-.|.|||.+.=.|+..+.+.|+-.+
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~ 37 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFS 37 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcC
Confidence 47888888778899999999999999999987665
No 268
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=24.59 E-value=45 Score=32.79 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=18.6
Q ss_pred eEEEEcCCcHHHHHHHHhh-hcC
Q 041003 79 DIYLCTTRIRSYAMMMAKL-LNP 100 (282)
Q Consensus 79 ei~i~T~~~~~Ya~~v~~~-ldp 100 (282)
+++|-|++.+.++++-++. +.-
T Consensus 110 ~~vVVTAsPrvmVEpFake~LG~ 132 (498)
T PLN02499 110 KRVVVTRMPRVMVERFAKEHLRA 132 (498)
T ss_pred eEEEEeCCHHHHHHHHHHHhcCC
Confidence 8999999999999998887 543
No 269
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.57 E-value=94 Score=27.63 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=39.4
Q ss_pred EEEEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhc-CCCc
Q 041003 59 FLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLN-PKCE 103 (282)
Q Consensus 59 ~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ld-p~~~ 103 (282)
.-.++-||.++-++.+.+...-+|-+.+-..|+..++.+|. |.+.
T Consensus 80 ~sa~lvPgA~etm~~l~~~~tp~v~STSY~qy~~r~a~~ig~Prg~ 125 (315)
T COG4030 80 LSAKLVPGAEETMATLQERWTPVVISTSYTQYLRRTASMIGVPRGE 125 (315)
T ss_pred hhcccCCChHHHHHHHhccCCceEEeccHHHHHHHHHHhcCCCccc
Confidence 34678899999999999999999999999999999999997 4543
No 270
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=24.51 E-value=72 Score=33.73 Aligned_cols=75 Identities=11% Similarity=-0.045 Sum_probs=58.8
Q ss_pred eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY 269 (282)
Q Consensus 191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~ 269 (282)
.++.|..+.++|..+. .........++.+||++...++.+..-++.+. +.++.|...+.+..+++...+ ...|+.
T Consensus 172 ~~~s~~~~~~tg~ld~--~~~~s~~~~~k~~~~~~~~~ls~kt~~s~~~~-e~~~~kle~~~~~~~~~~~e~-~~~~~~ 246 (871)
T KOG1968|consen 172 KPLSGIKFTPTGVLDD--IGTGSAEPSLKEFGASKTESLSDKTVESCLGD-EAIAKKLEKIKELEIPVLLEE-RKELFA 246 (871)
T ss_pred CCCcCceeeecCcccc--cccccchhhhhhccccccccCCCCcceeecCc-cccchhhcccccccccccchh-hhhhhc
Confidence 4689999999998765 23566788999999999999988887777763 567777777777888888877 655543
No 271
>KOG3908 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification]
Probab=24.28 E-value=1.1e+02 Score=28.12 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=40.6
Q ss_pred HHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCCcCCCCCCCC
Q 041003 215 KWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFP 281 (282)
Q Consensus 215 ~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~y~~ 281 (282)
..+-.++||.+.-.++ |||.. -..+++++.|... |+.|+.-|+.+.+|.||..-.|
T Consensus 137 i~iQnalG~DImMQLD----dVV~~--~ttg~rveeAM~R-----sIRWlDRCi~Ah~R~d~Q~lFp 192 (396)
T KOG3908|consen 137 IEIQNALGADIMMQLD----DVVHT--LTTGPRVEEAMYR-----SIRWLDRCIMAHNRDDEQNLFP 192 (396)
T ss_pred HHHHHHhchhhhhhhh----ccccc--cCCchHHHHHHHH-----HHHHHHHHHHHhcCccchhhhh
Confidence 4456678998876664 45544 3345678888766 5789999999999999876544
No 272
>PF05085 DUF685: Protein of unknown function (DUF685); InterPro: IPR007777 This family consists of uncharacterised proteins from Borrelia species. There is some evidence to suggest that the proteins may be outer surface proteins.
Probab=23.60 E-value=49 Score=29.53 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=34.8
Q ss_pred ceeccccccc-cCCceEEEcCChhhhhhCccCeeeHHHHHHHHHHHHhHhhcccccCCCCCccccccc
Q 041003 120 GKKSGDLVLR-QEWGVVIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDVRCFLG 186 (282)
Q Consensus 120 ~~KdL~~l~~-~~~~vvivDd~~~~~~~~~~N~i~iD~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~ 186 (282)
.+|||.++.. +....+.+||-..+.. +| ....||++++...|+.-....-++|++
T Consensus 11 qikdln~~t~v~~~dll~lddg~~s~~-----ai-------t~~~fl~~~~~~tfk~e~~~~fk~iik 66 (265)
T PF05085_consen 11 QIKDLNRVTTVNNTDLLLLDDGVASSN-----AI-------TYKNFLKTTKDKTFKGEGLGYFKEIIK 66 (265)
T ss_pred EeecccceeeccCCceEEecccccccc-----ce-------eHHHHHHHHhhhhhccCCcHHHHHHHH
Confidence 5899999875 7889999999875443 22 234566666665555434444444443
No 273
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=23.44 E-value=1.5e+02 Score=25.93 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=20.7
Q ss_pred EEeeccCCCCccchhHHHHHHHHhCCeEec
Q 041003 198 LFFSRDVDDKEFEFPLLKWRAGELGAACTD 227 (282)
Q Consensus 198 i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~ 227 (282)
...+|.+-+. ..++++.++|+.+|.++..
T Consensus 89 ~iv~GaI~s~-yqk~rve~lc~~lGl~~~~ 117 (223)
T COG2102 89 GIVAGAIASE-YQKERVERLCEELGLKVYA 117 (223)
T ss_pred EEEEchhhhH-HHHHHHHHHHHHhCCEEee
Confidence 4556665554 3567888999999998764
No 274
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=23.11 E-value=2.3e+02 Score=27.02 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=32.4
Q ss_pred hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEc
Q 041003 189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSV 239 (282)
Q Consensus 189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~ 239 (282)
+.+.|.|..+.+.|- ++..|.+-++.+|++--+++++.+ -+||.
T Consensus 27 ~~~~~~~~slavAGR------n~~KL~~vL~~~~~k~~~~ls~~~-i~i~D 70 (423)
T KOG2733|consen 27 SSQVFEGLSLAVAGR------NEKKLQEVLEKVGEKTGTDLSSSV-ILIAD 70 (423)
T ss_pred hhhcccCceEEEecC------CHHHHHHHHHHHhhccCCCcccce-EEEec
Confidence 566899999999885 246677888888888777777666 44444
No 275
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.39 E-value=89 Score=22.55 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=16.5
Q ss_pred eccc-HHHHHHHHhcCceEEEE
Q 041003 63 VRSY-IRKFLKKASKMYDIYLC 83 (282)
Q Consensus 63 ~RP~-l~~FL~~~~~~yei~i~ 83 (282)
-||| +.+|++.+.+...|..|
T Consensus 10 ErpGal~~Fl~~l~p~~~ITeF 31 (81)
T cd04907 10 ERPGALKKFLNELLPKWNITLF 31 (81)
T ss_pred CCCCHHHHHHHHhCCCCeEeEE
Confidence 5999 99999999866666553
No 276
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=21.68 E-value=1e+02 Score=22.33 Aligned_cols=14 Identities=29% Similarity=0.026 Sum_probs=12.3
Q ss_pred CCeeEEEeCCCcee
Q 041003 10 KKLHLVLDLDQTLP 23 (282)
Q Consensus 10 ~kl~LVLDLD~TLi 23 (282)
...+|||+=|||.|
T Consensus 39 ~~~~l~L~eDGTeV 52 (77)
T cd06535 39 AGSRLCLYEDGTEV 52 (77)
T ss_pred CCcEEEEecCCcEe
Confidence 35689999999999
No 277
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=21.00 E-value=62 Score=28.47 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=17.1
Q ss_pred cCCCeeEEEeCCCceeeeecc
Q 041003 8 RQKKLHLVLDLDQTLPHAVDI 28 (282)
Q Consensus 8 ~~~kl~LVLDLD~TLihs~~~ 28 (282)
.++..++.+|||+||-+.+..
T Consensus 12 ~~~~~~l~FDiDdtLYp~St~ 32 (244)
T KOG3109|consen 12 GPNYKCLFFDIDDTLYPLSTG 32 (244)
T ss_pred CccceEEEEecccccccCchh
Confidence 346679999999999998763
No 278
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=20.60 E-value=81 Score=27.95 Aligned_cols=73 Identities=11% Similarity=-0.003 Sum_probs=48.7
Q ss_pred ccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--------CceeccccccccCCceE
Q 041003 65 SYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--------KGKKSGDLVLRQEWGVV 135 (282)
Q Consensus 65 P~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--------~~~KdL~~l~~~~~~vv 135 (282)
.+..++|+++++ -+.+.+.|+....+= .+...++-. .+| +-++ .+|.. -+.+-|++++-.++.+|
T Consensus 116 ~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~f--D~vv--~S~e~g~~KPDp~If~~al~~l~v~Pee~v 189 (237)
T KOG3085|consen 116 DGMQELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYF--DFVV--ESCEVGLEKPDPRIFQLALERLGVKPEECV 189 (237)
T ss_pred cHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-Hhh--hhhh--hhhhhccCCCChHHHHHHHHHhCCChHHeE
Confidence 445599999975 579999999999886 444444433 467 4332 33432 13345555666799999
Q ss_pred EEcCChhh
Q 041003 136 IVDDTEKV 143 (282)
Q Consensus 136 ivDd~~~~ 143 (282)
.|||+...
T Consensus 190 hIgD~l~n 197 (237)
T KOG3085|consen 190 HIGDLLEN 197 (237)
T ss_pred EecCcccc
Confidence 99999855
No 279
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=20.23 E-value=45 Score=29.84 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHH
Q 041003 214 LKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQ 262 (282)
Q Consensus 214 l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~ 262 (282)
.+++.+++|+ +++|.++.+ .|-+....|+.++.+.|.+.
T Consensus 219 Fe~I~~Rfg~-------p~~~f~~IG---DG~eEe~aAk~l~wPFw~I~ 257 (274)
T TIGR01658 219 FKWIKERFGH-------PKVRFCAIG---DGWEECTAAQAMNWPFVKID 257 (274)
T ss_pred HHHHHHHhCC-------CCceEEEeC---CChhHHHHHHhcCCCeEEee
Confidence 4555566665 246677777 35555667788887776543
Done!