BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041006
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/356 (44%), Positives = 208/356 (58%), Gaps = 48/356 (13%)
Query: 7 VCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSN 66
+ I S G A GPS+MPGG EA+ ++ I + +AA+VD PC TYIG G+ +
Sbjct: 122 IHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGH 181
Query: 67 FVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFK 126
+VKMVHNGIEYGDMQLI+EAY+LLKHV G+ AEL E+F +WNKGEL S++++ITADIF
Sbjct: 182 YVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIFT 241
Query: 127 VKDEYGEGELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEA 186
DE LVD ILDK G KGTGKW S+ R+LS +K+ER +A
Sbjct: 242 KIDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVKA 301
Query: 187 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 246
+KVL +K D+ I+ VR+ALY SKICSYAQG +++ S E WNL
Sbjct: 302 SKVLAGPAVKP------FEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLR 355
Query: 247 FGELARIWKDG----------INKAYQRNPNLASLVMDPEFA----------REMVQ--- 283
+G++A I++ G I +AY R+P L++L++D F RE+V
Sbjct: 356 YGDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYFKDIVERYQDALREIVATAA 415
Query: 284 -------------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWTK 320
R A LP NL+QAQRD FGAHTYER+D+ G FHTEW K
Sbjct: 416 MRGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 471
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/356 (44%), Positives = 208/356 (58%), Gaps = 48/356 (13%)
Query: 7 VCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSN 66
+ I S G A GPS+MPGG EA+ ++ I + +AA+VD PC TYIG G+ +
Sbjct: 121 IHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGH 180
Query: 67 FVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFK 126
+VKMVHNGIEYGDMQLI+EAY+LLKHV G+ AEL E+F +WNKGEL S++++ITADIF
Sbjct: 181 YVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIFT 240
Query: 127 VKDEYGEGELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEA 186
DE LVD ILDK G KGTGKW S+ R+LS +K+ER +A
Sbjct: 241 KIDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVKA 300
Query: 187 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 246
+KVL +K D+ I+ VR+ALY SKICSYAQG +++ S E WNL
Sbjct: 301 SKVLAGPAVKP------FEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLR 354
Query: 247 FGELARIWKDG----------INKAYQRNPNLASLVMDPEFA----------REMVQ--- 283
+G++A I++ G I +AY R+P L++L++D F RE+V
Sbjct: 355 YGDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYFKDIVERYQDALREIVATAA 414
Query: 284 -------------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWTK 320
R A LP NL+QAQRD FGAHTYER+D+ G FHTEW K
Sbjct: 415 MRGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 470
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 276 bits (706), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 160/347 (46%), Positives = 200/347 (57%), Gaps = 51/347 (14%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDG-PCVTYIGEGGSSNFVKMVHN 73
S G A GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+ ++VKMVHN
Sbjct: 140 SGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHN 199
Query: 74 GIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGE 133
GIEYGDMQLI+EAY LLK ++N ELA+ F EWN GEL S+++ IT DIF KDE G
Sbjct: 200 GIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDEDGN 259
Query: 134 GELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEAAKVLKEA 193
LVD ILD+ KGTGKW S+ RY+S LK++R A+KVL
Sbjct: 260 -YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLS-- 316
Query: 194 GLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI 253
+ Q G DK I+ VR+ALY KI SYAQG + LR+ S E W+LN+GE+A+I
Sbjct: 317 --GPQAQPAG---DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKI 371
Query: 254 WKDG----------INKAYQRNPNLASLVMDPEFA----------REMVQ---------- 283
++ G I AY NP +A+L++ P F R++V
Sbjct: 372 FRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQIGIPVP 431
Query: 284 ------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEW 318
R A LP NL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 432 TFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 478
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 273 bits (698), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 157/349 (44%), Positives = 205/349 (58%), Gaps = 51/349 (14%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDG-PCVTYIGEGGSSNFVKMVHN 73
S G AR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+ G+ +FVKMVHN
Sbjct: 128 SGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHN 187
Query: 74 GIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGE 133
GIEYGDMQLI EAY+L+K V G+ + E+A+ F+EWNK EL+SF+++ITA I K +D G+
Sbjct: 188 GIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGK 247
Query: 134 GELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEAAKVLKEA 193
L+ KI D G KGTGKW ++ R LS LK+ER +A+K LK
Sbjct: 248 -HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGP 306
Query: 194 GLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI 253
QN+ DKK ++D+R+ALYASKI SYAQG LLR + E GW LN+G +A +
Sbjct: 307 ------QNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALM 360
Query: 254 WKDG----------INKAYQRNPNLASLVMDPEF--AREMVQ------------------ 283
W+ G I A+ RNP L +L++D F A E Q
Sbjct: 361 WRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAGIPMP 420
Query: 284 ------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSF-HTEWT 319
R A LP NL+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 421 CFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 469
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 199/347 (57%), Gaps = 51/347 (14%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDG-PCVTYIGEGGSSNFVKMVHN 73
S G A GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+ ++VKMVHN
Sbjct: 140 SGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHN 199
Query: 74 GIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGE 133
GIEYGDMQLI+EAY LLK ++N ELA+ F EWN GEL S+++ IT DIF KDE G
Sbjct: 200 GIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDEDGN 259
Query: 134 GELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEAAKVLKEA 193
LVD ILD+ KGTGKW S+ RY+S LK++R A+KVL
Sbjct: 260 -YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLS-- 316
Query: 194 GLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI 253
+ Q G DK I+ VR+ALY KI SYAQG + LR+ S E W+LN+GE+A+I
Sbjct: 317 --GPQAQPAG---DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKI 371
Query: 254 WKDG----------INKAYQRNPNLASLVMDPEFA----------REMVQ---------- 283
++ G I A NP +A+L++ P F R++V
Sbjct: 372 FRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVP 431
Query: 284 ------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEW 318
R A LP NL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 432 TFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 478
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 205/356 (57%), Gaps = 51/356 (14%)
Query: 7 VCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQV--DDGPCVTYIGEGGS 64
+ I S G + A GPS+MPGG EAY+ + I +++AA+ D PCV Y+G G+
Sbjct: 120 INFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGA 179
Query: 65 SNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADI 124
++VKMVHNGIEYGDMQLI+E+Y LLK + G+SNAE+ IF+EWN+GEL+S++++IT ++
Sbjct: 180 GHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEV 239
Query: 125 FKVKDEYGEGELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEERE 184
K KD+ GEG +VDKILDK G KGTGKW S+ RY+S K+ER
Sbjct: 240 LKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERV 299
Query: 185 EAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 244
+A+KVL L DKK +I+ +R+ALY SKI SYAQG LR S E W+
Sbjct: 300 KASKVLSGPALD-------FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWD 352
Query: 245 LNFGELARIWKDG----------INKAYQRNPNLASLVMDPEF----------AREMVQ- 283
L +G +A+IW+ G I A+ ++ L +L++D F R++V
Sbjct: 353 LPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSL 412
Query: 284 ---------------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEW 318
R LP NL+QAQRD FGAHTYER D+ G FH +W
Sbjct: 413 AVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDW 468
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 205/356 (57%), Gaps = 51/356 (14%)
Query: 7 VCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQV--DDGPCVTYIGEGGS 64
+ I S G + A GPS+MPGG EAY+ + I +++AA+ D PCV Y+G G+
Sbjct: 121 INFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGA 180
Query: 65 SNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADI 124
++VKMVHNGIEYGDMQLI+E+Y LLK + G+SNAE+ IF+EWN+GEL+S++++IT ++
Sbjct: 181 GHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEV 240
Query: 125 FKVKDEYGEGELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEERE 184
K KD+ GEG +VDKILDK G KGTGKW S+ RY+S K+ER
Sbjct: 241 LKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERV 300
Query: 185 EAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 244
+A+KVL L DKK +I+ +R+ALY SKI SYAQG LR S E W+
Sbjct: 301 KASKVLSGPALD-------FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWD 353
Query: 245 LNFGELARIWKDG----------INKAYQRNPNLASLVMDPEF----------AREMVQ- 283
L +G +A+IW+ G I A+ ++ L +L++D F R++V
Sbjct: 354 LPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSL 413
Query: 284 ---------------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEW 318
R LP NL+QAQRD FGAHTYER D+ G FH +W
Sbjct: 414 AVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDW 469
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 202/347 (58%), Gaps = 51/347 (14%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDG-PCVTYIGEGGSSNFVKMVHN 73
S G GPS+MPGG EAY + IL+++AA +DG PCVTYIG G+ ++VKMVHN
Sbjct: 140 SGGEEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAGHYVKMVHN 199
Query: 74 GIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGE 133
GIEYGDMQLI+EAY LLK +SN ELA+ F EWN+GEL S+++ IT DIF KDE G+
Sbjct: 200 GIEYGDMQLIAEAYALLKGGLALSNEELAQTFTEWNEGELSSYLIDITKDIFTKKDEEGK 259
Query: 134 GELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEAAKVLKEA 193
LVD ILD+ KGTGKW S+ RY+S LK++R A+KVL
Sbjct: 260 -YLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQRVAASKVLS-- 316
Query: 194 GLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI 253
+ Q G DK I+ VR+ALY KI SYAQG + LR+ S+E W+LN+GE+A+I
Sbjct: 317 --GPQAQPAG---DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYGEIAKI 371
Query: 254 WKDG----------INKAYQRNPNLASLVMDPEFA----------REMVQ---------- 283
++ G I AY +N +A+L++ P F R++V
Sbjct: 372 FRAGCIIRAQFLQKITDAYAQNAGIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVP 431
Query: 284 ------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEW 318
R A LP NL+QAQRD FGAHTY+R D+ G FHTEW
Sbjct: 432 TFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKEGIFHTEW 478
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 205/356 (57%), Gaps = 51/356 (14%)
Query: 7 VCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQV--DDGPCVTYIGEGGS 64
+ I S G + A GPS+MPGG EAY+ + I +++AA+ D PCV Y+G G+
Sbjct: 122 INFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGA 181
Query: 65 SNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADI 124
++VKMVHNGIEYGDMQLI+E+Y LLK + G+SNAE+ IF+EWN+GEL+S++++IT ++
Sbjct: 182 GHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEV 241
Query: 125 FKVKDEYGEGELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEERE 184
K KD+ GEG +VDKILDK G KGTGKW S+ RY+S K+ER
Sbjct: 242 LKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERV 301
Query: 185 EAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 244
+A+KVL L DKK +I+ +R+ALY SKI SYAQG LR S E W+
Sbjct: 302 KASKVLSGPALD-------FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWD 354
Query: 245 LNFGELARIWKDG----------INKAYQRNPNLASLVMDPEF----------AREMVQ- 283
L +G +A+IW+ G I A+ ++ L +L++D F R++V
Sbjct: 355 LPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSL 414
Query: 284 ---------------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEW 318
R LP NL+QAQRD FGAHTYER D+ G FH +W
Sbjct: 415 AVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDW 470
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 203/343 (59%), Gaps = 51/343 (14%)
Query: 21 ARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDG-PCVTYIGEGGSSNFVKMVHNGIEYGD 79
AR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+ G+ +FVKMVHNGIEYGD
Sbjct: 136 ARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGD 195
Query: 80 MQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDK 139
MQLI EAY+L+K V G++ E+A+ F++WNK EL+SF+++ITA+I K +D G+ L+ K
Sbjct: 196 MQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGK-HLLPK 254
Query: 140 ILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEAAKVLKEAGLKDEV 199
I D G KGTGKW ++ R LS LK+ER +A+K LK
Sbjct: 255 IRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGP------ 308
Query: 200 QNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKDG-- 257
Q DKK ++D+R+ALYASKI SYAQG LLR + E GW LN+G +A +W+ G
Sbjct: 309 QKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCI 368
Query: 258 --------INKAYQRNPNLASLVMDPEF--AREMVQ---RRA------------------ 286
I A+ RNP L +L++D F A E Q RRA
Sbjct: 369 IRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTAL 428
Query: 287 ---------RLPGNLVQAQRDLFGAHTYERIDRPGSF-HTEWT 319
LP +L+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 429 SFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWT 471
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/343 (44%), Positives = 201/343 (58%), Gaps = 51/343 (14%)
Query: 21 ARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDG-PCVTYIGEGGSSNFVKMVHNGIEYGD 79
AR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+ G+ +FVKMVHNGIEYGD
Sbjct: 157 ARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGD 216
Query: 80 MQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDK 139
MQLI EAY+L+K V G++ E+A+ F++WNK EL+SF+++ITA+I K +D G+ L+ K
Sbjct: 217 MQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGK-HLLPK 275
Query: 140 ILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEAAKVLKEAGLKDEV 199
I D G KGTGKW ++ R LS LK+ER +A+K LK
Sbjct: 276 IRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGP------ 329
Query: 200 QNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKDG-- 257
Q DKK ++D+R+ALYASKI SYAQG LLR + E GW LN+G +A +W+ G
Sbjct: 330 QKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCI 389
Query: 258 --------INKAYQRNPNLASLVMDPEF--AREMVQ------------------------ 283
I A+ RNP L +L++D F A E Q
Sbjct: 390 IRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTAL 449
Query: 284 ------RRARLPGNLVQAQRDLFGAHTYERIDRPGSF-HTEWT 319
R LP +L+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 450 SFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWT 492
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 193/350 (55%), Gaps = 58/350 (16%)
Query: 21 ARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDM 80
AR+GPSLMPGGS EA+ +I+ I Q ++A+ D PC ++G G+ ++VKMVHNGIEYGDM
Sbjct: 142 ARYGPSLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDM 201
Query: 81 QLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKI 140
QLI EAY ++K +GG ++ E++++F +WN G L+SF+V+IT DI K D G+ LV+KI
Sbjct: 202 QLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGK-PLVEKI 260
Query: 141 LDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEAAKVLKEAGL-KDEV 199
+D G KGTGKW ++ R LS LK ER A+KVL + KD V
Sbjct: 261 MDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVPKDAV 320
Query: 200 QNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKDG-- 257
+ D+++ +DD+ QALYASKI SYAQG L+R + GW LN +A +W+ G
Sbjct: 321 K------DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCI 374
Query: 258 --------INKAYQRNPNLASLVMDPEFAREMVQ-------------------------- 283
I KAY+ P+L +L+ + FA + +
Sbjct: 375 IRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTAL 434
Query: 284 ------RRARLPGNLVQAQRDLFGAHTYERIDRPGS--------FHTEWT 319
R RLP NL+QAQRD FGAHT+ + S H WT
Sbjct: 435 SFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIHINWT 484
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 167/357 (46%), Gaps = 59/357 (16%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDG-PCVTYIGEGGSSNFVKMVHN 73
S G AR GP+ PGG+ + I+ I++ AA+ DDG PCVT G GG+ + VKM HN
Sbjct: 130 SGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHN 189
Query: 74 GIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEW-NKGELESFMVQITADIFKVKDEYG 132
EY +Q+ E + +L+ + G++N E+A + ++W +K L+S+M+ I+ + KD+ G
Sbjct: 190 SGEYAILQIWGEVFDILRAM-GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDG 248
Query: 133 EGELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEAAK---- 188
L + ++D+ G KGTG W ++ R + K ER+ A
Sbjct: 249 S-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPG 307
Query: 189 VLKEAG--LKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 246
+ + G LK++ + G + K+L D V A+ I YAQ LR + LN
Sbjct: 308 ITQSPGYTLKNKSPS-GPEI--KQLYDSVCIAI----ISCYAQMFQCLREMDKVHNFGLN 360
Query: 247 FGELARIWKDG----------INKAYQRNPNLASLVMDPEFA--------REMV-----Q 283
++ G + +A+++NPN+++L+ + R+MV +
Sbjct: 361 LPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCAFQTEIRAGLQNYRDMVALITSK 420
Query: 284 RRARLP-------------------GNLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 321
+P G LV QRD+FG H YER+D+ G +W +L
Sbjct: 421 LEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPEL 477
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 21/86 (24%)
Query: 58 YIGEGGSSNFVKMVHNGIEYGDMQLISEAYYLLKHV-----GGVSNAE------------ 100
+ G G+ +FVK VHNGIEYG +E +L H G ++AE
Sbjct: 199 HCGPSGAGHFVKXVHNGIEYGLXAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRY 258
Query: 101 ---LAEIFDEWNKGE-LESFMVQITA 122
LA+I + W +G + S+++ ++A
Sbjct: 259 DLDLADITEVWRRGSVISSWLLDLSA 284
>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 571
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 21/98 (21%)
Query: 59 IGEGGSSNFVKMVHNGIEY---GDMQLISEAYYLLKHVGGVS------NAELAEIFDEWN 109
EG SS K+VH GI Y D++++++ V G++ + L I+++
Sbjct: 66 FAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGIAPHIPKPDPXLLPIYEDEG 125
Query: 110 KGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMK 147
F V++ D++ DK+ + TG K
Sbjct: 126 ATTFNXFSVKVAXDLY------------DKLANVTGTK 151
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 15 SPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHN 73
S G + A G ++M G S + IQ +L + G + ++G+ G+ + VK+V+N
Sbjct: 125 SGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVI------GKDIYHVGDTGAGDAVKIVNN 178
Query: 74 GIEYGDMQLISEAYYL 89
+ +M ++EA L
Sbjct: 179 LLLGCNMASLAEALVL 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,051,154
Number of Sequences: 62578
Number of extensions: 405113
Number of successful extensions: 1107
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 36
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)