Query 041006
Match_columns 333
No_of_seqs 296 out of 2334
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 2E-101 4E-106 732.4 27.0 312 3-321 117-470 (473)
2 KOG2653 6-phosphogluconate deh 100.0 1.1E-94 2.4E-99 676.9 25.7 319 3-327 120-482 (487)
3 PRK09287 6-phosphogluconate de 100.0 3.9E-87 8.5E-92 666.4 30.4 311 3-320 104-457 (459)
4 PTZ00142 6-phosphogluconate de 100.0 3.7E-86 8E-91 661.5 29.8 313 3-319 116-470 (470)
5 TIGR00873 gnd 6-phosphoglucona 100.0 1.5E-84 3.3E-89 649.8 29.9 310 3-319 113-466 (467)
6 PLN02350 phosphogluconate dehy 100.0 2.2E-83 4.8E-88 642.8 31.8 321 3-324 122-484 (493)
7 PF00393 6PGD: 6-phosphoglucon 100.0 6.5E-76 1.4E-80 548.7 22.2 249 65-319 1-291 (291)
8 TIGR00872 gnd_rel 6-phosphoglu 100.0 6.6E-40 1.4E-44 311.7 20.4 158 3-172 108-267 (298)
9 COG1023 Gnd Predicted 6-phosph 100.0 3.3E-39 7.1E-44 290.2 14.5 167 2-180 108-276 (300)
10 PRK12490 6-phosphogluconate de 100.0 5.2E-32 1.1E-36 257.6 20.6 157 3-172 109-268 (299)
11 PRK09599 6-phosphogluconate de 100.0 2.7E-32 5.8E-37 259.8 17.5 190 3-237 109-300 (301)
12 COG2084 MmsB 3-hydroxyisobutyr 100.0 3.9E-29 8.4E-34 234.8 16.6 157 3-178 110-267 (286)
13 KOG0409 Predicted dehydrogenas 99.9 4.9E-26 1.1E-30 211.5 15.1 159 3-180 145-304 (327)
14 PRK15059 tartronate semialdehy 99.9 2.4E-25 5.1E-30 211.4 17.4 153 3-172 108-261 (292)
15 PRK09287 6-phosphogluconate de 99.9 8.8E-26 1.9E-30 225.8 12.3 172 32-246 270-454 (459)
16 TIGR00873 gnd 6-phosphoglucona 99.9 5.3E-25 1.2E-29 220.8 13.1 172 32-246 277-464 (467)
17 PTZ00142 6-phosphogluconate de 99.9 8.5E-25 1.8E-29 219.4 13.3 171 33-246 282-468 (470)
18 TIGR01692 HIBADH 3-hydroxyisob 99.9 1.3E-23 2.9E-28 198.8 16.6 153 3-172 105-265 (288)
19 COG0362 Gnd 6-phosphogluconate 99.9 6.1E-24 1.3E-28 203.3 13.7 146 61-246 312-466 (473)
20 PRK15461 NADH-dependent gamma- 99.9 2.6E-23 5.5E-28 197.8 16.9 159 3-179 110-270 (296)
21 PF00393 6PGD: 6-phosphoglucon 99.9 2.3E-23 5E-28 195.3 10.4 145 62-246 136-289 (291)
22 PLN02858 fructose-bisphosphate 99.9 6E-22 1.3E-26 219.6 17.8 159 3-179 113-275 (1378)
23 KOG2653 6-phosphogluconate deh 99.9 1.4E-21 3.1E-26 184.6 9.3 146 64-256 320-475 (487)
24 TIGR01505 tartro_sem_red 2-hyd 99.8 3.8E-20 8.3E-25 175.2 17.5 153 3-172 108-261 (291)
25 PLN02858 fructose-bisphosphate 99.8 1.3E-20 2.8E-25 209.1 16.3 157 5-179 437-595 (1378)
26 PRK11559 garR tartronate semia 99.8 5.4E-20 1.2E-24 174.4 17.8 153 3-172 111-264 (296)
27 PLN02350 phosphogluconate dehy 99.8 7.4E-21 1.6E-25 191.6 11.3 144 64-246 326-477 (493)
28 PRK09599 6-phosphogluconate de 99.4 5.7E-13 1.2E-17 127.0 8.5 98 207-308 167-300 (301)
29 COG1023 Gnd Predicted 6-phosph 99.4 2.5E-13 5.3E-18 123.4 5.0 91 208-308 167-299 (300)
30 PF14833 NAD_binding_11: NAD-b 99.4 9E-12 1.9E-16 103.4 12.5 99 63-172 1-100 (122)
31 TIGR03026 NDP-sugDHase nucleot 99.2 3.5E-11 7.6E-16 119.5 10.3 136 9-172 144-291 (411)
32 PF03446 NAD_binding_2: NAD bi 99.2 1E-11 2.2E-16 108.2 2.9 53 3-61 109-163 (163)
33 PRK11064 wecC UDP-N-acetyl-D-m 98.8 2.3E-08 4.9E-13 99.7 9.5 92 7-105 152-247 (415)
34 PRK14618 NAD(P)H-dependent gly 98.8 4.1E-09 8.8E-14 101.6 3.8 155 5-172 127-305 (328)
35 PRK12557 H(2)-dependent methyl 98.7 3.7E-08 8E-13 95.8 8.6 89 4-104 137-235 (342)
36 PRK06129 3-hydroxyacyl-CoA deh 98.7 2E-07 4.3E-12 89.2 12.2 137 4-169 132-271 (308)
37 PRK00094 gpsA NAD(P)H-dependen 98.6 5.9E-08 1.3E-12 92.7 7.5 155 6-172 129-307 (325)
38 PRK14619 NAD(P)H-dependent gly 98.5 1.4E-07 3.1E-12 90.2 6.5 149 8-172 100-283 (308)
39 TIGR00872 gnd_rel 6-phosphoglu 98.5 3.2E-07 6.9E-12 87.5 8.1 91 207-307 165-297 (298)
40 PRK15182 Vi polysaccharide bio 98.3 1.9E-06 4.2E-11 86.2 9.4 94 5-104 139-242 (425)
41 PRK15057 UDP-glucose 6-dehydro 98.0 1.2E-05 2.7E-10 79.5 8.1 82 17-104 139-231 (388)
42 PRK08229 2-dehydropantoate 2-r 98.0 1.9E-05 4.1E-10 76.2 8.8 146 14-172 135-311 (341)
43 PRK07531 bifunctional 3-hydrox 97.9 3.8E-05 8.3E-10 78.4 7.8 89 3-113 129-222 (495)
44 PRK08269 3-hydroxybutyryl-CoA 97.6 0.00019 4.1E-09 69.2 7.1 76 3-104 132-214 (314)
45 PRK08268 3-hydroxy-acyl-CoA de 97.5 0.00034 7.4E-09 71.7 8.7 76 5-104 141-221 (507)
46 TIGR02279 PaaC-3OHAcCoADH 3-hy 97.3 0.0008 1.7E-08 68.9 8.4 80 3-106 137-221 (503)
47 PRK09260 3-hydroxybutyryl-CoA 97.3 0.0011 2.3E-08 62.8 8.2 76 5-104 136-216 (288)
48 PLN02688 pyrroline-5-carboxyla 97.2 0.0055 1.2E-07 57.1 12.7 87 8-115 111-208 (266)
49 PRK07679 pyrroline-5-carboxyla 97.2 0.0022 4.8E-08 60.4 9.2 78 11-105 114-206 (279)
50 PRK08507 prephenate dehydrogen 96.9 0.0034 7.3E-08 59.0 7.9 87 6-104 106-205 (275)
51 PRK11199 tyrA bifunctional cho 96.8 0.0059 1.3E-07 60.2 9.0 85 8-103 192-279 (374)
52 PRK06130 3-hydroxybutyryl-CoA 96.5 0.01 2.3E-07 56.6 8.2 79 6-104 135-215 (311)
53 PRK07417 arogenate dehydrogena 96.2 0.0062 1.3E-07 57.4 4.7 70 6-81 105-187 (279)
54 PRK06035 3-hydroxyacyl-CoA deh 96.1 0.015 3.2E-07 55.2 6.8 77 6-104 141-220 (291)
55 PRK07530 3-hydroxybutyryl-CoA 95.7 0.033 7.2E-07 52.7 7.3 79 5-104 138-218 (292)
56 PLN02545 3-hydroxybutyryl-CoA 94.4 0.18 4E-06 47.7 8.4 76 5-104 138-218 (295)
57 PRK08655 prephenate dehydrogen 93.8 0.57 1.2E-05 47.3 11.0 88 5-103 108-200 (437)
58 PRK12490 6-phosphogluconate de 93.3 0.18 3.9E-06 48.0 6.0 95 207-307 166-298 (299)
59 PRK07819 3-hydroxybutyryl-CoA 93.0 0.4 8.6E-06 45.5 7.9 80 3-104 136-221 (286)
60 PF00984 UDPG_MGDP_dh: UDP-glu 91.7 1.1 2.5E-05 35.5 7.8 89 64-172 3-91 (96)
61 PRK12921 2-dehydropantoate 2-r 91.5 2.8 6E-05 39.5 11.7 141 6-172 123-295 (305)
62 PRK06476 pyrroline-5-carboxyla 85.5 4.3 9.4E-05 37.5 8.3 77 7-104 110-192 (258)
63 PRK07502 cyclohexadienyl dehyd 84.9 2 4.4E-05 40.9 5.9 60 5-70 116-188 (307)
64 PLN02353 probable UDP-glucose 83.9 4.8 0.0001 41.1 8.4 73 26-104 173-250 (473)
65 PRK05808 3-hydroxybutyryl-CoA 83.8 4.1 8.8E-05 38.2 7.4 84 5-111 137-221 (282)
66 PRK06249 2-dehydropantoate 2-r 78.9 28 0.00061 33.1 11.4 22 151-172 282-303 (313)
67 PRK07680 late competence prote 76.3 15 0.00033 34.2 8.6 78 17-104 119-201 (273)
68 TIGR00745 apbA_panE 2-dehydrop 74.3 35 0.00075 31.6 10.5 20 151-170 264-283 (293)
69 COG1004 Ugd Predicted UDP-gluc 72.3 81 0.0018 31.7 12.6 135 14-172 145-289 (414)
70 PRK06522 2-dehydropantoate 2-r 71.9 35 0.00075 31.8 9.9 21 151-171 271-291 (304)
71 PRK06545 prephenate dehydrogen 70.5 6.1 0.00013 38.7 4.5 65 5-75 111-188 (359)
72 PRK11880 pyrroline-5-carboxyla 62.5 82 0.0018 28.9 10.2 80 17-105 119-202 (267)
73 PF08546 ApbA_C: Ketopantoate 57.7 99 0.0021 24.8 9.3 23 150-172 97-119 (125)
74 PF10728 DUF2520: Domain of un 57.4 86 0.0019 26.2 8.5 68 26-104 3-73 (132)
75 PRK08293 3-hydroxybutyryl-CoA 56.1 61 0.0013 30.4 8.2 66 29-111 159-224 (287)
76 TIGR01768 GGGP-family geranylg 40.0 33 0.00073 31.5 3.6 41 20-62 23-65 (223)
77 cd02812 PcrB_like PcrB_like pr 38.4 47 0.001 30.5 4.2 41 23-63 24-65 (219)
78 COG1646 Predicted phosphate-bi 37.3 42 0.00091 31.1 3.7 42 19-61 36-79 (240)
79 COG1893 ApbA Ketopantoate redu 37.2 3.8E+02 0.0082 25.6 11.8 121 27-172 148-294 (307)
80 COG5573 Predicted nucleic-acid 36.8 1.1E+02 0.0024 25.9 5.8 43 79-121 43-86 (142)
81 PF08673 RsbU_N: Phosphoserine 34.3 1.5E+02 0.0032 22.6 5.8 40 65-104 2-43 (77)
82 PRK07066 3-hydroxybutyryl-CoA 33.4 2.1E+02 0.0045 27.7 8.1 65 31-112 160-224 (321)
83 PRK14620 NAD(P)H-dependent gly 31.8 4.5E+02 0.0097 24.9 12.6 20 151-170 288-307 (326)
84 PRK08903 DnaA regulatory inact 30.9 1.2E+02 0.0025 27.1 5.6 45 26-74 19-65 (227)
85 PRK04169 geranylgeranylglycery 29.3 76 0.0017 29.3 4.1 42 18-61 26-69 (232)
86 PRK05708 2-dehydropantoate 2-r 28.3 3.2E+02 0.0069 25.9 8.4 22 151-172 270-291 (305)
87 PF04273 DUF442: Putative phos 27.7 1.1E+02 0.0023 24.9 4.3 44 3-63 54-97 (110)
88 cd01075 NAD_bind_Leu_Phe_Val_D 26.9 43 0.00094 29.9 2.0 42 3-47 129-173 (200)
89 PLN02913 dihydrofolate synthet 26.8 96 0.0021 32.0 4.7 43 35-77 57-99 (510)
90 PRK10846 bifunctional folylpol 24.9 1.2E+02 0.0025 30.2 4.8 46 31-76 27-72 (416)
91 PF01884 PcrB: PcrB family; I 24.2 86 0.0019 29.0 3.5 38 21-62 29-69 (230)
92 PLN02712 arogenate dehydrogena 23.9 3.3E+02 0.0071 29.2 8.3 53 5-64 476-540 (667)
93 PRK07634 pyrroline-5-carboxyla 22.7 4.8E+02 0.01 23.3 8.2 66 28-104 138-205 (245)
94 PF08298 AAA_PrkA: PrkA AAA do 22.5 1.9E+02 0.0042 28.5 5.7 47 31-77 65-114 (358)
95 COG0677 WecC UDP-N-acetyl-D-ma 21.9 5.5E+02 0.012 26.0 8.7 70 28-104 180-249 (436)
96 PF08031 BBE: Berberine and be 21.3 52 0.0011 22.3 1.1 22 294-316 14-42 (47)
97 PRK08084 DNA replication initi 20.6 1.8E+02 0.004 26.4 4.9 43 26-73 23-67 (235)
98 PF00158 Sigma54_activat: Sigm 20.3 1.9E+02 0.0041 25.0 4.7 39 32-73 4-44 (168)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-101 Score=732.37 Aligned_cols=312 Identities=56% Similarity=0.910 Sum_probs=301.4
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
.++|+.||+++||||++||++||||||||++++|+.|+|+|++|++|++|+|||.|+|+.|+|||||||||+|+|+.||.
T Consensus 117 ~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQl 196 (473)
T COG0362 117 SEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQL 196 (473)
T ss_pred HhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcCC
Q 041006 83 ISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELLI 162 (333)
Q Consensus 83 ~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~Gv 162 (333)
++|+|.+++..+||+.++|++||+.||.|.+.|||.+|+.++|+.+|+....+++|.|+|.+.||||++|++..|.++||
T Consensus 197 IaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGv 276 (473)
T COG0362 197 IAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGV 276 (473)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCC
Confidence 99999999988999999999999999999999999999999999998655569999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCC
Q 041006 163 AALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 242 (333)
Q Consensus 163 plP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~ 242 (333)
|+|.|.+|+++||+|++|++|..++++|.+|.. ....|++.|++++|+|||+|||+||||||++++++|++++
T Consensus 277 P~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~-------~~~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~g 349 (473)
T COG0362 277 PLTLITEAVFARYLSSLKDERVAASKVLAGPKL-------GEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYG 349 (473)
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999987754 2367999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh----------------------------
Q 041006 243 WNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR---------------------------- 284 (333)
Q Consensus 243 w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~---------------------------- 284 (333)
|++|+++||+|||+| |++||++||++.|||++|+|++.++++
T Consensus 350 W~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~pyF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~ 429 (473)
T COG0362 350 WDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYY 429 (473)
T ss_pred CCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 999999999999999 899999999999999999999999988
Q ss_pred ----ccCcchhHHHHHhhhhcCccccccCCCCcccccccCC
Q 041006 285 ----RARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 321 (333)
Q Consensus 285 ----~~~lp~~liqaqRd~FGaH~~~r~d~~~~~h~~w~~~ 321 (333)
+++||+|||||||||||||||+|+|++|.||++|++.
T Consensus 430 Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~ 470 (473)
T COG0362 430 DSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGG 470 (473)
T ss_pred HHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCC
Confidence 9999999999999999999999999999999999864
No 2
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-94 Score=676.86 Aligned_cols=319 Identities=57% Similarity=0.926 Sum_probs=301.6
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccC-CCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQV-DDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~-~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+++|+-||+++||||++|||+|||+||||++++|+.++++|++|++++ +++|||.|+|+.|+|||||||||+|+|+.||
T Consensus 120 ~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMq 199 (487)
T KOG2653|consen 120 AKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQ 199 (487)
T ss_pred HhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHH
Confidence 467999999999999999999999999999999999999999999997 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcC
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELL 161 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~G 161 (333)
.++|+|.++++..|++.++|+++|+.||.|.+.|||.+|+.+||+-+|. .+.++++++.|.++||||++|++..|.++|
T Consensus 200 LI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dIlk~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g 278 (487)
T KOG2653|consen 200 LICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILKFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELG 278 (487)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHHhheecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhC
Confidence 9999999999779999999999999999999999999999999998874 556899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCC
Q 041006 162 IAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 241 (333)
Q Consensus 162 vplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~ 241 (333)
+|+|+|.+|+++|++|++|++|..++++|.+|.... ....++++|++++|+|||+|||+||||||+|++++++++
T Consensus 279 ~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~-----~~~~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~ 353 (487)
T KOG2653|consen 279 VPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR-----DMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEK 353 (487)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998876431 233468999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh---------------------------
Q 041006 242 GWNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR--------------------------- 284 (333)
Q Consensus 242 ~w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~--------------------------- 284 (333)
+|.+|+++|+++||+| |++||++||+|+|||++|+|.+.+++.
T Consensus 354 gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Laf 433 (487)
T KOG2653|consen 354 GWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAF 433 (487)
T ss_pred CCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 9999999999999999 899999999999999999999999988
Q ss_pred -----ccCcchhHHHHHhhhhcCccccccCCCC-cccccccCCCCccCC
Q 041006 285 -----RARLPGNLVQAQRDLFGAHTYERIDRPG-SFHTEWTKLARQTGA 327 (333)
Q Consensus 285 -----~~~lp~~liqaqRd~FGaH~~~r~d~~~-~~h~~w~~~~~~~~~ 327 (333)
+++||+||+||||||||||||++++++| .+|++|++-++..++
T Consensus 434 ydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg~~s~ 482 (487)
T KOG2653|consen 434 YDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGGNVSS 482 (487)
T ss_pred HhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeeeecccCCcccc
Confidence 9999999999999999999999999999 699999985444433
No 3
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=3.9e-87 Score=666.35 Aligned_cols=311 Identities=56% Similarity=0.908 Sum_probs=295.0
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccC-CCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQV-DDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~-~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+++|++|||||||||+++|++|++||+||++++|++++|+|++|++++ +|+||++|+|+.|+||++|||||+|+|++|+
T Consensus 104 ~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq 183 (459)
T PRK09287 104 AEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQ 183 (459)
T ss_pred HhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999997 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcC
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELL 161 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~G 161 (333)
+++|+|.|++++.|+|++++.+||+.|+.|.+.|||++++.+++.++|+..+.+++|.+.|.+.||||++|++++|.++|
T Consensus 184 ~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~ 263 (459)
T PRK09287 184 LIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLG 263 (459)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhC
Confidence 99999999994489999999999999999999999999999999887743456899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCC
Q 041006 162 IAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 241 (333)
Q Consensus 162 vplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~ 241 (333)
||+|+|+.++++|+.|.++++|..++.+|.+|+. ....++++|++++|+|+|||||+||+|||++|+++|++|
T Consensus 264 v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-------~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~ 336 (459)
T PRK09287 264 VPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-------KFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEY 336 (459)
T ss_pred CChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999998876532 222477899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh---------------------------
Q 041006 242 GWNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR--------------------------- 284 (333)
Q Consensus 242 ~w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~--------------------------- 284 (333)
+|++||++|++|||+| |+++|++||+|.|||++|+|.+.++++
T Consensus 337 ~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y 416 (459)
T PRK09287 337 GWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSY 416 (459)
T ss_pred CCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999 899999999999999999999999888
Q ss_pred -----ccCcchhHHHHHhhhhcCccccccCCCCcccccccC
Q 041006 285 -----RARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWTK 320 (333)
Q Consensus 285 -----~~~lp~~liqaqRd~FGaH~~~r~d~~~~~h~~w~~ 320 (333)
++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 417 ~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 417 YDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred HHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 999999999999999999999999999999999975
No 4
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-86 Score=661.52 Aligned_cols=313 Identities=54% Similarity=0.924 Sum_probs=293.4
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
+++|++|||||||||+++|++|++||+||++++|++++|+|++|+++++|+||++|+|+.|+||++|||||+|+|+.|++
T Consensus 116 ~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~ 195 (470)
T PTZ00142 116 EEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQL 195 (470)
T ss_pred HHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcCC
Q 041006 83 ISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELLI 162 (333)
Q Consensus 83 ~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~Gv 162 (333)
++|+|.|+++..|+|++++.++|+.|+.|.+.|||++++.++|.++|+..+.+++|.+.|.+.+|||++|++++|.++||
T Consensus 196 iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v 275 (470)
T PTZ00142 196 ISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGI 275 (470)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCC
Confidence 99999999844999999999999999999999999999999999887422258999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCC
Q 041006 163 AALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 242 (333)
Q Consensus 163 plP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~ 242 (333)
|+|++++|+++|+.|++|++|..++.+|.+|.... . ....++++|++++|+|+|||||+||+|||++|+++|++|+
T Consensus 276 ~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~---~-~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~ 351 (470)
T PTZ00142 276 PVPTMAASVDARNISALKEERTKASSHLAGPNPAN---K-TETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFG 351 (470)
T ss_pred CchHHHHHHHHHHhhhhHHHHHHhccccCCCcccc---c-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999987663100 0 1123678999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh----------------------------
Q 041006 243 WNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR---------------------------- 284 (333)
Q Consensus 243 w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~---------------------------- 284 (333)
|++||++|++|||+| |+++|++||+|.|||++|+|.++++++
T Consensus 352 w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~ 431 (470)
T PTZ00142 352 WNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYY 431 (470)
T ss_pred CCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999 899999999999999999999999887
Q ss_pred ----ccCcchhHHHHHhhhhcCccccccCCCCccccccc
Q 041006 285 ----RARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWT 319 (333)
Q Consensus 285 ----~~~lp~~liqaqRd~FGaH~~~r~d~~~~~h~~w~ 319 (333)
++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 432 ~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 432 QMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999995
No 5
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=1.5e-84 Score=649.83 Aligned_cols=310 Identities=56% Similarity=0.897 Sum_probs=293.3
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
+++|++|||||||||+++|++|+++|+||++++|++++|+|++++++++|.||++|+|+.|+||++|||||+|+|++|++
T Consensus 113 ~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~ 192 (467)
T TIGR00873 113 KAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQL 192 (467)
T ss_pred HhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcCC
Q 041006 83 ISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELLI 162 (333)
Q Consensus 83 ~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~Gv 162 (333)
++|+|.|++++.|+|++++.++|+.|+.|.+.|||++++.+++.++|+ .+.+++|.+.|.+.+|||++|++++|.++||
T Consensus 193 ~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v 271 (467)
T TIGR00873 193 ICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGV 271 (467)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHhccCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCC
Confidence 999999996459999999999999999999999999999999998764 4568999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCC
Q 041006 163 AALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 242 (333)
Q Consensus 163 plP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~ 242 (333)
|+|++++++.+|+.|.+|++|..++.+|.+|... ....++++|++++|+|+|||||+||+|||++|+++|++|+
T Consensus 272 ~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~------~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~ 345 (467)
T TIGR00873 272 PVTLITESVFARYLSSLKEERVAASKVLSGPLAP------EPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYG 345 (467)
T ss_pred CchHHHHHHHHHhccccHHHHHHhhcccCCCCcc------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999988765321 1224678999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh----------------------------
Q 041006 243 WNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR---------------------------- 284 (333)
Q Consensus 243 w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~---------------------------- 284 (333)
|++||++|++|||+| |+++|++||+|.|||++|+|.++++++
T Consensus 346 w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~ 425 (467)
T TIGR00873 346 WDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFY 425 (467)
T ss_pred CCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999 899999999999999999999999887
Q ss_pred ----ccCcchhHHHHHhhhhcCccccccCCCC--ccccccc
Q 041006 285 ----RARLPGNLVQAQRDLFGAHTYERIDRPG--SFHTEWT 319 (333)
Q Consensus 285 ----~~~lp~~liqaqRd~FGaH~~~r~d~~~--~~h~~w~ 319 (333)
++++|+|||||||||||+|||+|+|++| .||++|+
T Consensus 426 ~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~ 466 (467)
T TIGR00873 426 DGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466 (467)
T ss_pred HHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCC
Confidence 9999999999999999999999999999 9999996
No 6
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=2.2e-83 Score=642.78 Aligned_cols=321 Identities=77% Similarity=1.196 Sum_probs=294.8
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
+++|++|||||||||+++|+.|++||+||++++|++++|+|++|+++++|+|||+|+|+.|+||++|||||+|+|+.|++
T Consensus 122 ~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~ 201 (493)
T PLN02350 122 AEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQL 201 (493)
T ss_pred HHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcCC
Q 041006 83 ISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELLI 162 (333)
Q Consensus 83 ~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~Gv 162 (333)
++|++.|+++..|+|++++.++|+.|+.|.+.||+.+++.+++..++++.+.+.++.+.|+..||||++|++++|.++|+
T Consensus 202 iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv 281 (493)
T PLN02350 202 ISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSV 281 (493)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCC
Confidence 99999999953599999999999999999999999999998887664235568999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCC
Q 041006 163 AALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 242 (333)
Q Consensus 163 plP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~ 242 (333)
|+|++++++.+||.|++|++|..++++|++|..+. .+......++..|++++|+|||||||+||+|||++|+++|++|+
T Consensus 282 ~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~ 360 (493)
T PLN02350 282 AAPTIAASLDARYLSGLKEERVAAAKVFKEAGLED-ILSADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKG 360 (493)
T ss_pred CccHHHHHHHHHHHhccHHHHHHHHhhcCCCCccc-cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987542110 00000124678999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh----------------------------
Q 041006 243 WNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR---------------------------- 284 (333)
Q Consensus 243 w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~---------------------------- 284 (333)
|++||++|++|||+| |.++|++||+|.|||++|+|.+.+.+.
T Consensus 361 w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~ 440 (493)
T PLN02350 361 WNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYF 440 (493)
T ss_pred CCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999 899999999999999999999998766
Q ss_pred ----ccCcchhHHHHHhhhhcCccccccCCCCcccccccCCCCc
Q 041006 285 ----RARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWTKLARQ 324 (333)
Q Consensus 285 ----~~~lp~~liqaqRd~FGaH~~~r~d~~~~~h~~w~~~~~~ 324 (333)
++++|+|||||||||||+|||+|+|++|.||++|++.++.
T Consensus 441 ~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w~~~~~~ 484 (493)
T PLN02350 441 DTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTKLARK 484 (493)
T ss_pred HhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCchhhcCc
Confidence 8999999999999999999999999999999999875543
No 7
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=6.5e-76 Score=548.75 Aligned_cols=249 Identities=58% Similarity=0.962 Sum_probs=210.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhh
Q 041006 65 SNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKT 144 (333)
Q Consensus 65 G~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~ 144 (333)
|||||||||+|||++||+++|+|.++++..|++++++++||+.||.|.+.|||++|+.++++++| .++.+++|.+.|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976899999999999999999999999999999999987 46779999999999
Q ss_pred cccCchHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHH
Q 041006 145 GMKGTGKWTIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKI 224 (333)
Q Consensus 145 ~~k~~~~~~v~~A~~~GvplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i 224 (333)
.+|||++|++++|.++|||+|++++|+++|+.|+++++|..++.++++|... .....++..|++++|+|||||+|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~-----~~~~~~~~~~i~~l~~Aly~~~i 154 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKF-----DESKEDKEEFIEDLRKALYAAKI 154 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-S-----TTS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhccccccc-----ccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765311 13456889999999999999999
Q ss_pred HhHHHHHHHHHhccCCCCCCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh----------
Q 041006 225 CSYAQGMNLLRSKSNEKGWNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR---------- 284 (333)
Q Consensus 225 ~syaQG~~ll~~as~~~~w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~---------- 284 (333)
+||+|||++|+++|++|+|++||++|++|||+| |.++|+++|+|+|||++|+|.+.++++
T Consensus 155 ~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ 234 (291)
T PF00393_consen 155 ISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSL 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 899999999999999999999999987
Q ss_pred ----------------------ccCcchhHHHHHhhhhcCccccccCCCCccccccc
Q 041006 285 ----------------------RARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWT 319 (333)
Q Consensus 285 ----------------------~~~lp~~liqaqRd~FGaH~~~r~d~~~~~h~~w~ 319 (333)
+++||+|||||||||||+|||+|+|++|.||++|+
T Consensus 235 ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 235 AIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 99999999999999999999999999999999995
No 8
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=6.6e-40 Score=311.73 Aligned_cols=158 Identities=32% Similarity=0.523 Sum_probs=142.2
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
+++|++|+|+|||||+.+|+.|+++|+||++++|++++|+|+.++.+.+ .++|+|+.|+|+++|++||+++++.|++
T Consensus 108 ~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~~~~~---~~~~~G~~G~~~~~K~~~n~l~~~~~~~ 184 (298)
T TIGR00872 108 KEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQ---GYLYCGPCGSGHFVKMVHNGIEYGMMAA 184 (298)
T ss_pred HhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhcCcCC---CEEEECCccHhHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999997311 2899999999999999999999999999
Q ss_pred HHHHHHHHHH-hCCCCHHHHHHHHHHhccchh-hhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHc
Q 041006 83 ISEAYYLLKH-VGGVSNAELAEIFDEWNKGEL-ESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAEL 160 (333)
Q Consensus 83 ~AEg~~Ll~~-~~Gld~~~ia~I~~~w~~G~i-~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~ 160 (333)
++|+|.|+++ +||+|+++++++ |+.||+ .|++++++.+++++++ .++.+.+...++++++|++.+|.+.
T Consensus 185 ~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~r~~v~~a~~~ 255 (298)
T TIGR00872 185 IAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------DLAEFSGRVSDSGEGRWTVIAAIDL 255 (298)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------cHHHHHHHHHhhccHHHHHHHHHHh
Confidence 9999999997 568899999999 999995 7999999989998765 2344666667889999999999999
Q ss_pred CCChhHHHHHHH
Q 041006 161 LIAALTIAGSLD 172 (333)
Q Consensus 161 GvplP~~~aAl~ 172 (333)
|+|+|++++++.
T Consensus 256 g~p~P~~~~al~ 267 (298)
T TIGR00872 256 GVPAPVIATSLQ 267 (298)
T ss_pred CCCHHHHHHHHH
Confidence 999999999876
No 9
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-39 Score=290.19 Aligned_cols=167 Identities=36% Similarity=0.545 Sum_probs=150.8
Q ss_pred CccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 2 KPVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 2 ~~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
.+++|++|||++.|||..|++.|-++|+|||+++|++++|+|++++...+ ...|+||.|+|||+|||||+|+|++|+
T Consensus 108 l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA~ge~---Gyl~~Gp~GsGHfvKMVHNGIEYGmM~ 184 (300)
T COG1023 108 LAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGED---GYLYCGPSGSGHFVKMVHNGIEYGMMQ 184 (300)
T ss_pred HHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhCcCcC---ccccccCCCcchhHHHHhccHHHHHHH
Confidence 35789999999999999999999999999999999999999999997322 378999999999999999999999999
Q ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHHHhccchhh-hhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHH
Q 041006 82 LISEAYYLLKH-VGGVSNAELAEIFDEWNKGELE-SFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAE 159 (333)
Q Consensus 82 a~AEg~~Ll~~-~~Gld~~~ia~I~~~w~~G~i~-S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~ 159 (333)
+|||+|.|+++ .+.+|+++++++ ||.|..+ |||++.+..+|++++ -++.+.+.....+.++|++++|.+
T Consensus 185 a~aEGfelL~~s~fD~D~~~VA~v---W~hGSVIrSWLldLt~~Af~~d~------~L~q~~g~v~dSGEGrWTv~~ald 255 (300)
T COG1023 185 AIAEGFELLKNSPFDYDLEAVAEV---WNHGSVIRSWLLDLTAEAFKKDP------DLDQISGRVSDSGEGRWTVEEALD 255 (300)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHH---HhCcchHHHHHHHHHHHHHhhCC------CHHHhcCeeccCCCceeehHHHHh
Confidence 99999999997 688999999999 9999766 999999999998764 246666666677899999999999
Q ss_pred cCCChhHHHHHHHHHHHhhhh
Q 041006 160 LLIAALTIAGSLDCRYLSGLK 180 (333)
Q Consensus 160 ~GvplP~~~aAl~~r~~s~~~ 180 (333)
+|||+|+++.|+..||-|.-.
T Consensus 256 lgvpaPVia~al~~Rf~S~~~ 276 (300)
T COG1023 256 LGVPAPVIALALMMRFRSRQD 276 (300)
T ss_pred cCCCchHHHHHHHHHHhccch
Confidence 999999999999999887544
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=5.2e-32 Score=257.65 Aligned_cols=157 Identities=32% Similarity=0.537 Sum_probs=132.2
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
+++|++|||||||||+.+|+.|.++|+||++++|++++|+|+.++... ++++|+|+.|+|+++||+||.+.++.+++
T Consensus 109 ~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~~---~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~ 185 (299)
T PRK12490 109 AERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPEG---PGYVHAGPVGSGHFLKMVHNGIEYGMMQA 185 (299)
T ss_pred HHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCcC---CcEEEECCcCHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999720 14999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHhccch-hhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHH
Q 041006 83 ISEAYYLLKHVGG--VSNAELAEIFDEWNKGE-LESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAE 159 (333)
Q Consensus 83 ~AEg~~Ll~~~~G--ld~~~ia~I~~~w~~G~-i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~ 159 (333)
++|++.|+++ .| +|++++.++ |+.++ +.|++++...+++..++ + . +-++...++ .++.+|+++.|.+
T Consensus 186 ~aEa~~l~~~-~g~~ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~~-~-~-~~l~~~~KD---~~~~~l~~~~A~~ 255 (299)
T PRK12490 186 YAEGLELLDK-SDFDFDVEDVARL---WRNGSVIRSWLLDLTVKALAEDP-K-L-AGIKGYVND---SGEGRWTVEEAIE 255 (299)
T ss_pred HHHHHHHHHH-cccCCCHHHHHHH---HcCCcHHHHHHHHHHHHHHhhCC-C-h-hhhhHHHHh---cCcHHHHHHHHHH
Confidence 9999999996 66 999999998 99766 66998888878876554 2 2 222333321 2335899999999
Q ss_pred cCCChhHHHHHHH
Q 041006 160 LLIAALTIAGSLD 172 (333)
Q Consensus 160 ~GvplP~~~aAl~ 172 (333)
.|+|+|+++++++
T Consensus 256 ~g~~~P~~~~a~~ 268 (299)
T PRK12490 256 LAVAAPVIAASLF 268 (299)
T ss_pred cCCCHHHHHHHHH
Confidence 9999998877654
No 11
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=2.7e-32 Score=259.80 Aligned_cols=190 Identities=28% Similarity=0.489 Sum_probs=155.8
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
+++|++|||||||||+.+|+.|++||+||++++|++++|+|+.++.+++ -.++|+|+.|+|+++|+++|+++++.+++
T Consensus 109 ~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~~~--~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~ 186 (301)
T PRK09599 109 AEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAE--DGYLHAGPVGAGHFVKMVHNGIEYGMMQA 186 (301)
T ss_pred HHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHccccc--CCeEeECCCcHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999998210 02999999999999999999999999999
Q ss_pred HHHHHHHHHH-hCCCCHHHHHHHHHHhccchh-hhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHc
Q 041006 83 ISEAYYLLKH-VGGVSNAELAEIFDEWNKGEL-ESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAEL 160 (333)
Q Consensus 83 ~AEg~~Ll~~-~~Gld~~~ia~I~~~w~~G~i-~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~ 160 (333)
++|++.|+++ +||+|++++.++ |+.||+ .|++++.+.+++.+++. .+. +....+ .+++.+|+++.|.+.
T Consensus 187 ~aEa~~l~~~~~~gld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~~~-~~~--~~~~~k---d~~~~~~~~~~A~~~ 257 (301)
T PRK09599 187 YAEGFELLEASRFDLDLAAVAEV---WRRGSVIRSWLLDLTADALAEDPK-LDE--ISGYVE---DSGEGRWTVEEAIDL 257 (301)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcCCC-HHH--HHHHHH---hhCcHHHHHHHHHHc
Confidence 9999999992 399999999888 999984 79999988888866531 111 112222 256789999999999
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhc
Q 041006 161 LIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSK 237 (333)
Q Consensus 161 GvplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~a 237 (333)
|+|+|++++++..| +.++...+.+.+ ++.+|||+| |.|+|+|.
T Consensus 258 ~~~~P~~~~a~~~~-~~~~~~~~~~~~-----------------------~~~a~~~~f----------g~h~~~~~ 300 (301)
T PRK09599 258 AVPAPVIAAALFMR-FRSRQEDSFADK-----------------------VVAALRNGF----------GGHAVKKK 300 (301)
T ss_pred CCCHHHHHHHHHHH-HHhccCCCcHHH-----------------------HHHHHHHhc----------CCCCccCC
Confidence 99999999988744 444444444443 445999999 99999873
No 12
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.96 E-value=3.9e-29 Score=234.76 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=140.7
Q ss_pred ccCCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+++|+.|||||||||+.+|++|+ +||+||++++|++++|+|++++.+ ++|+|+.|+|+.+||+||.+..+.++
T Consensus 110 ~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~------i~~~G~~G~G~~~Kl~nn~l~~~~~~ 183 (286)
T COG2084 110 AAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKN------IVHVGPVGAGQAAKLANNILLAGNIA 183 (286)
T ss_pred HhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCc------eEEECCCCchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999 999999999999999999999997 99999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcC
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELL 161 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~G 161 (333)
+++|++.|+++ +|+|++.+.++ .+.|...|+..+...+.+.++|+ .+.|.++...+ |.+++.++|.+.|
T Consensus 184 a~aEAl~la~k-~Gld~~~~~~v---i~~~~~~s~~~e~~~~~m~~~~~-~p~F~v~~~~K------Dl~la~~~A~~~g 252 (286)
T COG2084 184 ALAEALALAEK-AGLDPDVVLEV---ISGGAAGSWILENYGPRMLEGDF-SPGFAVDLMLK------DLGLALDAAKELG 252 (286)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHH---HhccccCChHHHhhcchhhcCCC-CcchhHHHHHH------HHHHHHHHHHhcC
Confidence 99999999996 99999999999 88888889988877655555653 56677777664 6999999999999
Q ss_pred CChhHHHHHHHHHHHhh
Q 041006 162 IAALTIAGSLDCRYLSG 178 (333)
Q Consensus 162 vplP~~~aAl~~r~~s~ 178 (333)
+|+|+.+.+.+ .++.
T Consensus 253 ~~lP~~~~~~~--ly~~ 267 (286)
T COG2084 253 APLPLTALAAE--LYAK 267 (286)
T ss_pred CCCcHHHHHHH--HHHH
Confidence 99999877665 5543
No 13
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.94 E-value=4.9e-26 Score=211.54 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=136.4
Q ss_pred ccCCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+.+|.+|||||||||..+|+.|+ +||+|||++.|+++.|+|+.|+++ ++|+|..|.|+.+|+++|.+.+..|.
T Consensus 145 ~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~------~~~~G~~GnG~~~Kl~nnm~~g~~M~ 218 (327)
T KOG0409|consen 145 SNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKN------VVFLGGVGNGQAAKLCNNMLLGSSMV 218 (327)
T ss_pred HhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcce------EEEecccCchHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999 999999999999999999999987 99999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcC
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELL 161 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~G 161 (333)
++||++.|+.+ .|||..++++| ++.|...|...+...+-+.+++ +.+.+.++.+.+ |.+++..+|.+.+
T Consensus 219 g~aEal~la~r-~GLd~~~l~ei---ln~G~~~S~~~~~~~p~m~k~d-y~p~f~~~~m~K------DLgla~~~a~~~~ 287 (327)
T KOG0409|consen 219 GLAEALALADR-LGLDAKKLLEI---LNTGRCWSSMFYNPVPGMLKGD-YNPGFALKLMVK------DLGLALNAAESVK 287 (327)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHH---HhcCCcccHHHhCcCchhhcCC-CCCcchHHHHHH------HHHHHHHhhhccC
Confidence 99999999996 99999999999 6667556655555444444555 356666666543 6999999999999
Q ss_pred CChhHHHHHHHHHHHhhhh
Q 041006 162 IAALTIAGSLDCRYLSGLK 180 (333)
Q Consensus 162 vplP~~~aAl~~r~~s~~~ 180 (333)
+|+|..+.|.+ .+..++
T Consensus 288 ~~~P~~slA~q--ly~~~~ 304 (327)
T KOG0409|consen 288 VPMPLGSLAHQ--LYKSMK 304 (327)
T ss_pred CCCchHHHHHH--HHHHHH
Confidence 99999888766 555444
No 14
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.93 E-value=2.4e-25 Score=211.44 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=134.2
Q ss_pred ccCCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+++|+.|+|+|||||+.+|+.|+ ++|+||++++|++++|+|+.|+.+ ++|+|+.|+|+.+|++||.+.++.++
T Consensus 108 ~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~------~~~~G~~G~g~~~Kl~~N~l~~~~~~ 181 (292)
T PRK15059 108 NELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKN------ITLVGGNGDGQTCKVANQIIVALNIE 181 (292)
T ss_pred HHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCC------cEEeCCccHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999 999999999999999999999986 99999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcC
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELL 161 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~G 161 (333)
+++|++.|+++ .|+|++++.++ ++.+...|++.+...+.+.++++ .+.|-++... ||.+++++.|.+.|
T Consensus 182 a~~Ea~~la~~-~Gld~~~~~~~---l~~~~~~s~~~~~~~~~~~~~~~-~~~f~l~~~~------KDl~l~~~~a~~~g 250 (292)
T PRK15059 182 AVSEALLFASK-AGADPVRVRQA---LMGGFASSRILEVHGERMIKRTF-NPGFKIALHQ------KDLNLALQSAKALA 250 (292)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHH---HHcCcccCHHHHhhchhhhcCCC-CCCCchHHHH------HHHHHHHHHHHHcC
Confidence 99999999996 99999999999 77777778887776665555553 4556565554 46999999999999
Q ss_pred CChhHHHHHHH
Q 041006 162 IAALTIAGSLD 172 (333)
Q Consensus 162 vplP~~~aAl~ 172 (333)
+|+|+...+..
T Consensus 251 ~~~p~~~~~~~ 261 (292)
T PRK15059 251 LNLPNTATCQE 261 (292)
T ss_pred CCChHHHHHHH
Confidence 99998766544
No 15
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.93 E-value=8.8e-26 Score=225.78 Aligned_cols=172 Identities=14% Similarity=0.207 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCceEEeCCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHH
Q 041006 32 SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGS-----SNFVKMVHNGIEYGDMQLISEAYYLLKH-----VGGVSNAEL 101 (333)
Q Consensus 32 ~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~Ga-----G~~vKlv~N~l~~a~m~a~AEg~~Ll~~-----~~Gld~~~i 101 (333)
.+++|.+++|.++...... ...|.|+.++ +|++|+|||+|++++|++|+|||.|+++ +|++|+.+|
T Consensus 270 ~~AvfaR~~S~~k~~r~~~----~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~i 345 (459)
T PRK09287 270 TEAVFARYLSSLKDQRVAA----SKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEI 345 (459)
T ss_pred HHHHHHHhccccHHHHHHh----hcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4689999999998765431 1345676554 8999999999999999999999999998 899999999
Q ss_pred HHHHHHhccchhh-hhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCch--HHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 041006 102 AEIFDEWNKGELE-SFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTG--KWTIQQAAELLIAALTIAGSLDCRYLSG 178 (333)
Q Consensus 102 a~I~~~w~~G~i~-S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~--~~~v~~A~~~GvplP~~~aAl~~r~~s~ 178 (333)
++| |++|||+ |.|++...++|++++ ...++++++.|....++... +|++..|.+.|+|+|++++|+. |+++
T Consensus 346 a~i---Wr~GcIIRs~lL~~i~~a~~~~~-~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~--y~d~ 419 (459)
T PRK09287 346 ARI---WRGGCIIRAQFLQKITDAYEANP-DLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALS--YYDS 419 (459)
T ss_pred HHH---hCCCCEEeHHHHHHHHHHHHhCC-CchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHH--HHHH
Confidence 999 9999998 766665569998765 35677788877755544433 6799999999999999999998 9999
Q ss_pred hhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCCCCC
Q 041006 179 LKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 246 (333)
Q Consensus 179 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~w~~~ 246 (333)
+++.|.++|.+ | +|||+| |.|+|+|.|++..||++
T Consensus 420 ~~~~~~~anli-q----------------------aqRd~F----------GaH~~~r~d~~g~~h~~ 454 (459)
T PRK09287 420 YRTARLPANLI-Q----------------------AQRDYF----------GAHTYERTDKEGFFHTE 454 (459)
T ss_pred hhcCCccHHHH-H----------------------HHHhHh----------CCCCcccCCCCCCCccc
Confidence 99999998777 4 999999 99999999999999999
No 16
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.92 E-value=5.3e-25 Score=220.83 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=143.9
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCceEEeCCCCh------hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHH
Q 041006 32 SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGS------SNFVKMVHNGIEYGDMQLISEAYYLLKH-----VGGVSNAE 100 (333)
Q Consensus 32 ~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~Ga------G~~vKlv~N~l~~a~m~a~AEg~~Ll~~-----~~Gld~~~ 100 (333)
..++|+++.|.++....... ..+.||.+. +|++|++||+|++++|++|+|||.|+++ +|++|+.+
T Consensus 277 ~~av~~R~~S~~k~~r~~~~----~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ 352 (467)
T TIGR00873 277 TESVFARYLSSLKEERVAAS----KVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGE 352 (467)
T ss_pred HHHHHHHhccccHHHHHHhh----cccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 36789999999987654311 234566543 8999999999999999999999999996 59999999
Q ss_pred HHHHHHHhccchhh-hhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCc-h-HHHHHHHHHcCCChhHHHHHHHHHHHh
Q 041006 101 LAEIFDEWNKGELE-SFMVQITADIFKVKDEYGEGELVDKILDKTGMKGT-G-KWTIQQAAELLIAALTIAGSLDCRYLS 177 (333)
Q Consensus 101 ia~I~~~w~~G~i~-S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~-~-~~~v~~A~~~GvplP~~~aAl~~r~~s 177 (333)
|++| |++|||+ |.|++...++|++++ ...++++++.|...+++.. . +|++..|.+.|+|+|++++|+. |++
T Consensus 353 ia~i---Wr~GcIIrs~lL~~i~~a~~~~~-~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~--y~~ 426 (467)
T TIGR00873 353 IALI---WRGGCIIRSGFLDKITKAFAENP-DLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALS--FYD 426 (467)
T ss_pred HHHH---hCCCceeeHhHHHHHHHHHHcCC-ChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHH
Confidence 9999 9999998 766665568998765 3566777777775554333 3 6799999999999999999999 999
Q ss_pred hhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCC--CCCCC
Q 041006 178 GLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK--GWNLN 246 (333)
Q Consensus 178 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~--~w~~~ 246 (333)
++++.|.++|.+ | +|||+| |.|+|+|.|++. .||++
T Consensus 427 ~~~s~~~~~nli-q----------------------aqRd~F----------GaH~~~r~d~~g~~~~h~~ 464 (467)
T TIGR00873 427 GYRTARLPANLL-Q----------------------AQRDYF----------GAHTYERTDKPRGEFFHTN 464 (467)
T ss_pred HhhcCcccHHHH-H----------------------HHHHHh----------ccccccccCCCCCCccCCC
Confidence 999999998877 4 999999 999999999998 89999
No 17
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.92 E-value=8.5e-25 Score=219.41 Aligned_cols=171 Identities=14% Similarity=0.199 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCceEEeCCC--------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHH
Q 041006 33 FEAYNNIQGILQKVAAQVDDGPCVTYIGEG--------GSSNFVKMVHNGIEYGDMQLISEAYYLLKH-----VGGVSNA 99 (333)
Q Consensus 33 ~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~--------GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~-----~~Gld~~ 99 (333)
..+|.++.|.++....... ..+.||. +.+|++|+|||+|++++|++|+|||.|+++ +|++|+.
T Consensus 282 ~a~~~R~~S~~k~~r~~~~----~~~~gp~~~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~ 357 (470)
T PTZ00142 282 ASVDARNISALKEERTKAS----SHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLG 357 (470)
T ss_pred HHHHHHHhhhhHHHHHHhc----cccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 6788999999887654311 2344543 689999999999999999999999999995 8899999
Q ss_pred HHHHHHHHhccchhh-hhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCch--HHHHHHHHHcCCChhHHHHHHHHHHH
Q 041006 100 ELAEIFDEWNKGELE-SFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTG--KWTIQQAAELLIAALTIAGSLDCRYL 176 (333)
Q Consensus 100 ~ia~I~~~w~~G~i~-S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~--~~~v~~A~~~GvplP~~~aAl~~r~~ 176 (333)
+|++| |++|||+ |.|++...++|++++ ...++++++.|...+++... +|++..|.+.|+|+|++++|+. |+
T Consensus 358 ~ia~i---Wr~GcIIRs~lL~~i~~a~~~~~-~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~--y~ 431 (470)
T PTZ00142 358 EIARI---WRGGCIIRAVFLDRIKNAFKKNP-QLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLA--YY 431 (470)
T ss_pred HHHHH---hCCCceeeHhHHHHHHHHHhcCC-ChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHH--HH
Confidence 99999 9999998 766665568988765 35667777777755544433 6799999999999999999999 99
Q ss_pred hhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCCCCC
Q 041006 177 SGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 246 (333)
Q Consensus 177 s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~w~~~ 246 (333)
++++++|.++|.+ | +|||+| |.|+|+|.|+++.||++
T Consensus 432 ~s~~~~~~~anli-q----------------------aqRd~F----------GaH~~~r~d~~g~~h~~ 468 (470)
T PTZ00142 432 QMYRSQNLPANLV-Q----------------------AQRDYF----------GAHTYKRLDRPGAFHTN 468 (470)
T ss_pred HHhhcCCccHHHH-H----------------------HHHHHh----------CCCCcccCCCCCCCCCC
Confidence 9999999998877 5 999999 99999999999999999
No 18
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.91 E-value=1.3e-23 Score=198.80 Aligned_cols=153 Identities=19% Similarity=0.119 Sum_probs=128.6
Q ss_pred ccCCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+++|++|||+|||||+.+|+.|+ ++|+||++++|++++|+|+.++.+ ++|+|+.|+|+.+|+++|.+.++.++
T Consensus 105 ~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~------~~~~g~~g~g~~~Kl~~n~~~~~~~~ 178 (288)
T TIGR01692 105 AAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN------IVHCGDHGAGQAAKICNNMLLGISMI 178 (288)
T ss_pred HHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCC------eEeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999 999999999999999999999986 99999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHH-------HhcccCCCCCchhhHHHHHhhcccCchHHHH
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITAD-------IFKVKDEYGEGELVDKILDKTGMKGTGKWTI 154 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~-------il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v 154 (333)
+++|++.++++ .|+|++++.++ ++.+...|+..+.... +...++ +.+.+.++... ||.+++.
T Consensus 179 ~~~Ea~~la~~-~Gld~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~------KDl~~~~ 247 (288)
T TIGR01692 179 GTAEAMALGEK-LGLDPKVLFEI---ANTSSGRCWSSDTYNPVPGVMPQAPASNG-YQGGFGTALML------KDLGLAQ 247 (288)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHH---HhcCCccCcHHHHhCCCccccccccccCC-CCCCcchHHHH------hhHHHHH
Confidence 99999999995 99999999999 7777666665553322 122334 24445444433 4789999
Q ss_pred HHHHHcCCChhHHHHHHH
Q 041006 155 QQAAELLIAALTIAGSLD 172 (333)
Q Consensus 155 ~~A~~~GvplP~~~aAl~ 172 (333)
+.|.+.|+|+|+...+..
T Consensus 248 ~~a~~~g~~~p~~~~~~~ 265 (288)
T TIGR01692 248 DAAKSAGAPTPLGALARQ 265 (288)
T ss_pred HHHHHcCCCChHHHHHHH
Confidence 999999999998766544
No 19
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=6.1e-24 Score=203.32 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=135.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHhccchhh--hhHHHHHHHHhcccCCCCC
Q 041006 61 EGGSSNFVKMVHNGIEYGDMQLISEAYYLLKH-----VGGVSNAELAEIFDEWNKGELE--SFMVQITADIFKVKDEYGE 133 (333)
Q Consensus 61 ~~GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~-----~~Gld~~~ia~I~~~w~~G~i~--S~L~~i~~~il~~~d~~~~ 133 (333)
+.....++..+.++|+++.|.+|||||+++++ +|+|++.+|+.| |++|||+ .||..|+ +++.+++ ...
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~i---WR~GCIIRs~FL~~I~-~af~~~p-~l~ 386 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALI---WRGGCIIRSKFLDKIT-DAFDENP-ELA 386 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH---HhccceehHHHHHHHH-HHHhcCc-chh
Confidence 44577899999999999999999999999997 999999999999 9999998 5888887 8888776 467
Q ss_pred chhhHHHHHhhcccCchHH--HHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhH
Q 041006 134 GELVDKILDKTGMKGTGKW--TIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRL 211 (333)
Q Consensus 134 ~~lvd~~~d~~~~k~~~~~--~v~~A~~~GvplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (333)
++++++.|.....+....| ++..|.+.|+|+|++++|+. |+++|+++|+|+|++ |
T Consensus 387 nLl~~pyF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssals--y~Dsyr~~~lpaNLi-Q-------------------- 443 (473)
T COG0362 387 NLLLAPYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALS--YYDSYRTARLPANLI-Q-------------------- 443 (473)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHhhhccccHHHH-H--------------------
Confidence 8999999998888888888 99999999999999999999 999999999999998 5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCCCCCC
Q 041006 212 IDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 246 (333)
Q Consensus 212 ~~~lrda~~~~~i~syaQG~~ll~~as~~~~w~~~ 246 (333)
+|||+| |+|+|+|.|++..||++
T Consensus 444 --AQRDyF----------GAHtyeR~D~~~~fHt~ 466 (473)
T COG0362 444 --AQRDYF----------GAHTYERTDKEGFFHTN 466 (473)
T ss_pred --HHHHhh----------cccceeecCCCCccccC
Confidence 999999 99999999999999999
No 20
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.91 E-value=2.6e-23 Score=197.76 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=130.4
Q ss_pred ccCCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+++|+.|||+|||||+.+|+.|+ ++|+||++++|++++|+|+.|+.+ ++|+|+.|+|+.+|+++|.+.++.++
T Consensus 110 ~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~------~~~~g~~G~g~~~Kl~~N~~~~~~~~ 183 (296)
T PRK15461 110 QAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNE------LINAGGPGMGIRVKLINNYMSIALNA 183 (296)
T ss_pred HHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCC------eEeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999 899999999999999999999987 99999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhh-HHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHc
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESF-MVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAEL 160 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~-L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~ 160 (333)
+++|++.++++ .|+|++.+.++ ++.+...++ +.....+.+.++++ .+.|-++... ||.+++.+.|.+.
T Consensus 184 ~~~Ea~~l~~~-~Gld~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~------KD~~l~~~~a~~~ 252 (296)
T PRK15461 184 LSAEAAVLCEA-LGLSFDVALKV---MSGTAAGKGHFTTTWPNKVLKGDL-SPAFMIDLAH------KDLGIALDVANQL 252 (296)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHH---HhcCcccChHHHccccchhccCCC-CCCcchHHHH------hhHHHHHHHHHHc
Confidence 99999999995 99999999999 665554443 33333323444453 4555555443 4799999999999
Q ss_pred CCChhHHHHHHHHHHHhhh
Q 041006 161 LIAALTIAGSLDCRYLSGL 179 (333)
Q Consensus 161 GvplP~~~aAl~~r~~s~~ 179 (333)
|+|+|+...+.. +|..+.
T Consensus 253 g~~~p~~~~~~~-~~~~a~ 270 (296)
T PRK15461 253 HVPMPLGAASRE-VYSQAR 270 (296)
T ss_pred CCCChHHHHHHH-HHHHHH
Confidence 999998766544 444433
No 21
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=99.89 E-value=2.3e-23 Score=195.29 Aligned_cols=145 Identities=19% Similarity=0.288 Sum_probs=114.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHhccchhh-h-hHHHHHHHHhcccCCCCCc
Q 041006 62 GGSSNFVKMVHNGIEYGDMQLISEAYYLLKH-----VGGVSNAELAEIFDEWNKGELE-S-FMVQITADIFKVKDEYGEG 134 (333)
Q Consensus 62 ~GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~-----~~Gld~~~ia~I~~~w~~G~i~-S-~L~~i~~~il~~~d~~~~~ 134 (333)
.....+++.++++++++.+.+|+|||.|+++ +|++|+.+|++| |++|||+ | +|.++ .+++++++ ...+
T Consensus 136 ~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ia~I---Wr~GCIIRs~lL~~i-~~af~~~p-~l~n 210 (291)
T PF00393_consen 136 EDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSEIARI---WRGGCIIRSWLLDDI-AEAFKENP-DLEN 210 (291)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHH---TSSSSTT-BTHHHHH-HHHHHH-T-T-ST
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHH---HhccchHHHHHHHHH-HHHHHhCC-Chhc
Confidence 4567899999999999999999999999997 999999999999 9999998 5 55555 48888876 3567
Q ss_pred hhhHHHHHhhcccCch--HHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHH
Q 041006 135 ELVDKILDKTGMKGTG--KWTIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLI 212 (333)
Q Consensus 135 ~lvd~~~d~~~~k~~~--~~~v~~A~~~GvplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (333)
+++++.|...+++... +|++..|.+.|+|+|++++|+. |++++++.|+|+|.+ |
T Consensus 211 Lll~~~f~~~l~~~~~~lR~vV~~ai~~gipvPalsaaL~--Y~ds~~~~~lpanlI-Q--------------------- 266 (291)
T PF00393_consen 211 LLLDPYFAEELKDNQPSLRRVVSLAIEAGIPVPALSAALS--YFDSYRSERLPANLI-Q--------------------- 266 (291)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHH--HHHHHTTSSHTHHHH-H---------------------
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHhcccCCCcHHHH-H---------------------
Confidence 8888887776665544 5599999999999999999999 999999999998887 5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccCCCCCCCC
Q 041006 213 DDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 246 (333)
Q Consensus 213 ~~lrda~~~~~i~syaQG~~ll~~as~~~~w~~~ 246 (333)
+|||+| |.|+|+|.|+++.||++
T Consensus 267 -AqRDyF----------GaHtyeR~D~~g~fH~~ 289 (291)
T PF00393_consen 267 -AQRDYF----------GAHTYERIDKEGSFHTE 289 (291)
T ss_dssp -HHHHHH----------H---EEBSSSSSEE---
T ss_pred -HHHHHh----------cCcceeecCCCCCcCCC
Confidence 999999 99999999999999999
No 22
>PLN02858 fructose-bisphosphate aldolase
Probab=99.88 E-value=6e-22 Score=219.64 Aligned_cols=159 Identities=20% Similarity=0.232 Sum_probs=135.1
Q ss_pred ccCC--ccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEE-eCCCChhhHHHHHHHHHHHH
Q 041006 3 PVRR--VCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTY-IGEGGSSNFVKMVHNGIEYG 78 (333)
Q Consensus 3 ~~~G--~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~-~G~~GaG~~vKlv~N~l~~a 78 (333)
+++| +.|||||||||+.+|++|+ ++|+||++++|++++|+|+.||.+ ++| +|+.|+|+.+|++||.+.++
T Consensus 113 ~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~------i~~~~G~~G~g~~~KL~nN~l~~~ 186 (1378)
T PLN02858 113 TERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQK------LYTFEGEIGAGSKVKMVNELLEGI 186 (1378)
T ss_pred HhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCc------eEEecCCCCHhHHHHHHHHHHHHH
Confidence 4567 9999999999999999999 999999999999999999999987 776 49999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHH
Q 041006 79 DMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAA 158 (333)
Q Consensus 79 ~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~ 158 (333)
.+++++|++.|+++ +|||++.+.++ ++.|...|+..+...+.+.++++ .+.|.++... ||.+++++.|.
T Consensus 187 ~~~a~aEAl~la~~-~Gld~~~l~~v---l~~s~g~s~~~~~~~~~~~~~d~-~~~F~l~l~~------KDl~la~~~A~ 255 (1378)
T PLN02858 187 HLVASAEAMALGVR-AGIHPWIIYDI---ISNAAGSSWIFKNHVPLLLKDDY-IEGRFLNVLV------QNLGIVLDMAK 255 (1378)
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHH---HhcCCccCHHHHhhhhHhhcCCC-CCCchhHHHH------HHHHHHHHHHH
Confidence 99999999999995 99999999999 88788888777766555555553 4556666554 36999999999
Q ss_pred HcCCChhHHHHHHHHHHHhhh
Q 041006 159 ELLIAALTIAGSLDCRYLSGL 179 (333)
Q Consensus 159 ~~GvplP~~~aAl~~r~~s~~ 179 (333)
+.|+|+|+...+.. .|..+.
T Consensus 256 ~~g~~lpl~~~a~~-~~~~a~ 275 (1378)
T PLN02858 256 SLPFPLPLLAVAHQ-QLISGS 275 (1378)
T ss_pred HcCCCChHHHHHHH-HHHHHH
Confidence 99999998766543 454433
No 23
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.4e-21 Score=184.57 Aligned_cols=146 Identities=18% Similarity=0.323 Sum_probs=134.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHhccchhh-h-hHHHHHHHHhcccCCCCCchh
Q 041006 64 SSNFVKMVHNGIEYGDMQLISEAYYLLKH-----VGGVSNAELAEIFDEWNKGELE-S-FMVQITADIFKVKDEYGEGEL 136 (333)
Q Consensus 64 aG~~vKlv~N~l~~a~m~a~AEg~~Ll~~-----~~Gld~~~ia~I~~~w~~G~i~-S-~L~~i~~~il~~~d~~~~~~l 136 (333)
.-++++.+.++++++.|.+|||||.|+++ +|.++...|+.+ |++|||+ | ||.+|+ +++++++ +..+++
T Consensus 320 k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlm---WrgGCIIRsvfL~~I~-~a~~~~p-~l~nll 394 (487)
T KOG2653|consen 320 KKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALM---WRGGCIIRSVFLDRIK-KAYQRNP-DLANLL 394 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH---HcCCeEeeHHHHHHHH-HHHhcCc-cHhhhc
Confidence 56789999999999999999999999987 999999999999 9999998 5 777787 8888776 366899
Q ss_pred hHHHHHhhcccCchHH--HHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHH
Q 041006 137 VDKILDKTGMKGTGKW--TIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDD 214 (333)
Q Consensus 137 vd~~~d~~~~k~~~~~--~v~~A~~~GvplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (333)
+++.|.++..+....| ++..|.+.|+|+|.+++++. |+++|+.+|+|+|++ | +
T Consensus 395 ~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~La--fydgyr~e~lpaNll-Q----------------------A 449 (487)
T KOG2653|consen 395 LDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALA--FYDGYRSERLPANLL-Q----------------------A 449 (487)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH--HHhhhhhhcCcHHHH-H----------------------H
Confidence 9999999999999999 99999999999999999999 999999999999988 5 9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccCCC-CCCCChHHHHHHhhh
Q 041006 215 VRQALYASKICSYAQGMNLLRSKSNEK-GWNLNFGELARIWKD 256 (333)
Q Consensus 215 lrda~~~~~i~syaQG~~ll~~as~~~-~w~~~~~~ia~iWr~ 256 (333)
|||+| |+|+|++.+++. ..|+| |.+
T Consensus 450 qRDYF----------GAHtye~l~~~~~~~Htn-------Wtg 475 (487)
T KOG2653|consen 450 QRDYF----------GAHTYELLGEPGKAIHTN-------WTG 475 (487)
T ss_pred HHHhh----------ccceeeecCCCcceeeee-------ecc
Confidence 99999 999999999998 68999 976
No 24
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.85 E-value=3.8e-20 Score=175.17 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=132.1
Q ss_pred ccCCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+++|++|+|+||+|++.+|+.|. .+|+||+++++++++|+|+.++.+ ++|+|+.|+|+.+|+++|.+.+..++
T Consensus 108 ~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~------~~~~g~~g~a~~~Kl~~n~~~~~~~~ 181 (291)
T TIGR01505 108 KEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKN------IVLVGGNGDGQTCKVANQIIVALNIE 181 (291)
T ss_pred HHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCC------eEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999998 999999999999999999999986 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcC
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELL 161 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~G 161 (333)
+++|++.|+++ +|+|++++.++ ++.+...|++.+.+.+.+..+++ .+.+-++... +|.+++.+.|.+.|
T Consensus 182 ~~~Ea~~l~~~-~Gid~~~~~~~---l~~~~~~s~~~~~~~~~~~~~~~-~~~f~~~~~~------KDl~~~~~~a~~~g 250 (291)
T TIGR01505 182 AVSEALVFASK-AGVDPVRVRQA---LRGGLAGSTVLEVKGERVIDRTF-KPGFRIDLHQ------KDLNLALDSAKAVG 250 (291)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHH---HhcCcccCHHHHhhChhhhcCCC-CCCcchHHHH------HHHHHHHHHHHHcC
Confidence 99999999996 99999999999 66666678877766555555553 4555555544 36889999999999
Q ss_pred CChhHHHHHHH
Q 041006 162 IAALTIAGSLD 172 (333)
Q Consensus 162 vplP~~~aAl~ 172 (333)
+|+|++..+..
T Consensus 251 ~~~~~~~~~~~ 261 (291)
T TIGR01505 251 ANLPNTATVQE 261 (291)
T ss_pred CCChhHHHHHH
Confidence 99998877654
No 25
>PLN02858 fructose-bisphosphate aldolase
Probab=99.85 E-value=1.3e-20 Score=209.10 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=131.6
Q ss_pred CCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEe-CCCChhhHHHHHHHHHHHHHHHH
Q 041006 5 RRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYI-GEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 5 ~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~-G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
+|++|||||||||+.+|+.|+ ++|+||++++|++++|+|+.++.+ ++|+ |+.|+|+.+|+++|.+.++.+++
T Consensus 437 ~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~------i~~~~g~~G~a~~~KL~nN~l~~~~~aa 510 (1378)
T PLN02858 437 RDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEK------LYVIKGGCGAGSGVKMVNQLLAGVHIAS 510 (1378)
T ss_pred CCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCc------EEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999 999999999999999999999987 7775 57899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcCC
Q 041006 83 ISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELLI 162 (333)
Q Consensus 83 ~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~Gv 162 (333)
++|++.++++ .|||++++.++ .+.+...|+..+...+.+.++++ .+.+.++...+ |.+++++.|.+.|+
T Consensus 511 ~aEal~la~k-~Gld~~~l~ev---l~~s~g~s~~~~~~~~~~l~~d~-~~~f~l~l~~K------Dl~l~~~~a~~~g~ 579 (1378)
T PLN02858 511 AAEAMAFGAR-LGLNTRKLFDI---ISNAGGTSWMFENRVPHMLDNDY-TPYSALDIFVK------DLGIVSREGSSRKI 579 (1378)
T ss_pred HHHHHHHHHH-cCCCHHHHHHH---HHhhcccChhhhhccchhhcCCC-CCCchhHHHHH------HHHHHHHHHHHcCC
Confidence 9999999996 99999999999 66676677766544344444553 45566666553 68999999999999
Q ss_pred ChhHHHHHHHHHHHhhh
Q 041006 163 AALTIAGSLDCRYLSGL 179 (333)
Q Consensus 163 plP~~~aAl~~r~~s~~ 179 (333)
|+|+...+.. .|..+.
T Consensus 580 ~~pl~~~~~~-~~~~a~ 595 (1378)
T PLN02858 580 PLHLSTVAHQ-LFLAGS 595 (1378)
T ss_pred CChHHHHHHH-HHHHHH
Confidence 9998766544 444433
No 26
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.84 E-value=5.4e-20 Score=174.38 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=130.4
Q ss_pred ccCCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+++|++|+|+||+||+..|+.|+ .+|+||+++++++++|+|+.++.+ ++|+|+.|+|+.+|+++|.+.++.++
T Consensus 111 ~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~------~~~~g~~g~a~~~Kl~~n~~~~~~~~ 184 (296)
T PRK11559 111 KAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGS------VVHTGDIGAGNVTKLANQVIVALNIA 184 (296)
T ss_pred HHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCC------eEEeCCcCHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999 999999999999999999999986 88999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcC
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELL 161 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~G 161 (333)
+++|++.++++ .|+|++++.++ ++.+...|++.+...+.+.++++ .+.+-++... +|.+++++.|.+.|
T Consensus 185 ~~~Ea~~l~~~-~Gi~~~~~~~~---l~~~~~~s~~~~~~~~~~~~~d~-~~~f~~~~~~------KDl~~~~~~a~~~g 253 (296)
T PRK11559 185 AMSEALVLATK-AGVNPDLVYQA---IRGGLAGSTVLDAKAPMVMDRNF-KPGFRIDLHI------KDLANALDTSHGVG 253 (296)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHH---HhcCcccCHHHHhhchHhhcCCC-CCCcchHHHH------HHHHHHHHHHHHcC
Confidence 99999999995 99999999888 88887777777655444444453 3444444433 36889999999999
Q ss_pred CChhHHHHHHH
Q 041006 162 IAALTIAGSLD 172 (333)
Q Consensus 162 vplP~~~aAl~ 172 (333)
+|+|++..+..
T Consensus 254 ~~~p~~~~~~~ 264 (296)
T PRK11559 254 APLPLTAAVME 264 (296)
T ss_pred CCChHHHHHHH
Confidence 99998877655
No 27
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.84 E-value=7.4e-21 Score=191.58 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=125.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHhccchhh-hhHHHHHHHHhcccCCCCCchhh
Q 041006 64 SSNFVKMVHNGIEYGDMQLISEAYYLLKH-----VGGVSNAELAEIFDEWNKGELE-SFMVQITADIFKVKDEYGEGELV 137 (333)
Q Consensus 64 aG~~vKlv~N~l~~a~m~a~AEg~~Ll~~-----~~Gld~~~ia~I~~~w~~G~i~-S~L~~i~~~il~~~d~~~~~~lv 137 (333)
...+++.++++++++.+++|+|||.|+++ +|++|+.+|++| |++|||+ |+|++...++|++++ ...++++
T Consensus 326 ~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~i---Wr~GcIIrs~lL~~i~~a~~~~~-~l~~l~~ 401 (493)
T PLN02350 326 KKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARI---WKGGCIIRAVFLDRIKKAYDRNP-DLASLLV 401 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH---hCCCceeeHhHHHHHHHHHHcCC-ChhhhcC
Confidence 36789999999999999999999999994 899999999999 9999998 777776669998765 3556677
Q ss_pred HHHHHhhccc--CchHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHH
Q 041006 138 DKILDKTGMK--GTGKWTIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDV 215 (333)
Q Consensus 138 d~~~d~~~~k--~~~~~~v~~A~~~GvplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (333)
++.|.....+ +..+|++..|.+.|+|+|++++|+. |++++++.|.++|.+ | +|
T Consensus 402 ~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~--y~~s~~~~~~~~nli-q----------------------aq 456 (493)
T PLN02350 402 DPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLA--YFDTYRRARLPANLV-Q----------------------AQ 456 (493)
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHH--HHHhhccCCccHHHH-H----------------------HH
Confidence 7766644433 3456799999999999999999999 999999999998877 4 99
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccCCCCCCCC
Q 041006 216 RQALYASKICSYAQGMNLLRSKSNEKGWNLN 246 (333)
Q Consensus 216 rda~~~~~i~syaQG~~ll~~as~~~~w~~~ 246 (333)
||+| |.|+|+|.|+++.||+|
T Consensus 457 Rd~F----------GaH~~~r~d~~g~~h~~ 477 (493)
T PLN02350 457 RDYF----------GAHTYERVDRPGSFHTE 477 (493)
T ss_pred HHHh----------CCCceeeCCCCCCCcCC
Confidence 9999 99999999999999999
No 28
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.40 E-value=5.7e-13 Score=127.01 Aligned_cols=98 Identities=22% Similarity=0.465 Sum_probs=74.9
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCCCCChHHHHHHhhhc----------chhhhccCCCCCCC---cC
Q 041006 207 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKDG----------INKAYQRNPNLASL---VM 273 (333)
Q Consensus 207 ~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~l---l~ 273 (333)
..+++++.+.++++++.+++|+||+.+.++ ++|++|+.++.++|+.| +.+++.++|.+.++ +.
T Consensus 167 G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~k 242 (301)
T PRK09599 167 GAGHFVKMVHNGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVE 242 (301)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 357899999999999999999999999988 78999999999999975 55666666543221 00
Q ss_pred c----HHHHHHHHHh-------------------ccCcchhHHHHHhhhhcCcccccc
Q 041006 274 D----PEFAREMVQR-------------------RARLPGNLVQAQRDLFGAHTYERI 308 (333)
Q Consensus 274 ~----~~~~~~~~~~-------------------~~~lp~~liqaqRd~FGaH~~~r~ 308 (333)
+ ..+.+...+. ...+|.+++||||||||+|+|+|.
T Consensus 243 d~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 243 DSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred hhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 0 0011111111 778999999999999999999985
No 29
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.5e-13 Score=123.37 Aligned_cols=91 Identities=19% Similarity=0.514 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCCCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHH
Q 041006 208 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEF 277 (333)
Q Consensus 208 ~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~ 277 (333)
.+||++.+++.++|++|++|++||++|+... |++||++||++||.| ..+||+++|+|..+
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s~----fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~------ 236 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNSP----FDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI------ 236 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHh------
Confidence 4799999999999999999999999997644 999999999999999 68899999987554
Q ss_pred HHHHHHh--------------------------------ccCcchhHHHHHhhhhcCcccccc
Q 041006 278 AREMVQR--------------------------------RARLPGNLVQAQRDLFGAHTYERI 308 (333)
Q Consensus 278 ~~~~~~~--------------------------------~~~lp~~liqaqRd~FGaH~~~r~ 308 (333)
...+.++ .......++.|+|..||+|..+++
T Consensus 237 ~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 237 SGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred cCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 4444444 333448899999999999998864
No 30
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.37 E-value=9e-12 Score=103.36 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHH-HhcccCCCCCchhhHHHH
Q 041006 63 GSSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITAD-IFKVKDEYGEGELVDKIL 141 (333)
Q Consensus 63 GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~-il~~~d~~~~~~lvd~~~ 141 (333)
|+|+.+|+++|.+.++.+.+++|++.++++ .|||++++.++ ++.|...|+..+...+ .+.+++ +.+.+.++...
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~-~Gld~~~~~~v---l~~~~~~s~~~~~~~~~~~~~~~-~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEK-AGLDPEQLLDV---LSAGSGGSWMLKNRAPRMILNGD-FDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS-HHHHHHH---HHTSTTHBHHHHHHHHHHHHTTT-TCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHH---HccCCcCchHHHhhhhhhhhccc-CCccchhHhhc
Confidence 789999999999999999999999999995 99999999999 7888888877776544 344454 35666677665
Q ss_pred HhhcccCchHHHHHHHHHcCCChhHHHHHHH
Q 041006 142 DKTGMKGTGKWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 142 d~~~~k~~~~~~v~~A~~~GvplP~~~aAl~ 172 (333)
+ |.+++++.|.+.|+|+|+.+.+.+
T Consensus 76 K------Dl~l~~~~a~~~g~~~p~~~~~~~ 100 (122)
T PF14833_consen 76 K------DLRLALDLAKEAGVPLPLGSAARQ 100 (122)
T ss_dssp H------HHHHHHHHHHHTT---HHHHHHHH
T ss_pred c------HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4 689999999999999999887765
No 31
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.23 E-value=3.5e-11 Score=119.54 Aligned_cols=136 Identities=14% Similarity=0.055 Sum_probs=109.8
Q ss_pred EEecccCCCHHHHhcCC---------eecccCCHHHHHHHHHHHHHHh-ccCCCCCceEEeCCCChhhHHHHHHHHHHHH
Q 041006 9 LISAWGSPGARKARHGP---------SLMPGGSFEAYNNIQGILQKVA-AQVDDGPCVTYIGEGGSSNFVKMVHNGIEYG 78 (333)
Q Consensus 9 ~ldapVSGg~~gA~~G~---------sim~GG~~~a~~~v~pvL~~i~-~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a 78 (333)
++|+||+++|+.++.|. .+|+||+++++++++|+|+.++ .+ ++++|+.+++..+|+++|.+.+.
T Consensus 144 ~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~Ae~~Kl~~N~~~a~ 217 (411)
T TIGR03026 144 GEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDG------PVLVTSIETAEMIKLAENTFRAV 217 (411)
T ss_pred CCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCC------CEEcCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999997 5899999999999999999998 33 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCch--hhHHHHHhhcccCchHHHHHH
Q 041006 79 DMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTIQQ 156 (333)
Q Consensus 79 ~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~--lvd~~~d~~~~k~~~~~~v~~ 156 (333)
.++.++|+..|+++ .|+|..++.++ .+.+.- +. ..+ +.+.+ -.+-+ .+|..+.+..
T Consensus 218 ~ia~~nE~~~la~~-~GiD~~~v~~~---~~~~~~----------i~-~~~-~~pg~g~gg~c~------~KD~~~l~~~ 275 (411)
T TIGR03026 218 KIAFANELARICEA-LGIDVYEVIEA---AGTDPR----------IG-FNF-LNPGPGVGGHCI------PKDPLALIYK 275 (411)
T ss_pred HHHHHHHHHHHHHH-hCCCHHHHHHH---hCCCCC----------CC-CCc-CCCCCCCCCCch------hhhHHHHHHH
Confidence 99999999999995 99999999888 544321 11 111 11211 11111 2468889999
Q ss_pred HHHcCCChhHHHHHHH
Q 041006 157 AAELLIAALTIAGSLD 172 (333)
Q Consensus 157 A~~~GvplP~~~aAl~ 172 (333)
|.+.|+++|++.++..
T Consensus 276 a~~~g~~~~l~~~~~~ 291 (411)
T TIGR03026 276 AKELGYNPELIEAARE 291 (411)
T ss_pred HHhcCCCcHHHHHHHH
Confidence 9999999999877655
No 32
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.18 E-value=1e-11 Score=108.16 Aligned_cols=53 Identities=28% Similarity=0.487 Sum_probs=47.9
Q ss_pred ccCCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceE-EeCC
Q 041006 3 PVRRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVT-YIGE 61 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~-~~G~ 61 (333)
+++|++|||||||||+.+|++|+ ++|+||++++|++++|+|++++.+ ++ |+||
T Consensus 109 ~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~------v~~~~G~ 163 (163)
T PF03446_consen 109 AAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKN------VYHYVGP 163 (163)
T ss_dssp HHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEE------EEEE-ES
T ss_pred hhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCC------ceeeeCc
Confidence 46899999999999999999999 999999999999999999999997 78 4586
No 33
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.78 E-value=2.3e-08 Score=99.70 Aligned_cols=92 Identities=11% Similarity=0.107 Sum_probs=84.5
Q ss_pred ccEEecc--cCCCHHHHhcCC-eecccC-CHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHH
Q 041006 7 VCLISAW--GSPGARKARHGP-SLMPGG-SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 7 ~~~ldap--VSGg~~gA~~G~-sim~GG-~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
+.++++| +.+|...+..+. ..|+|| +++++++++|+++.++.+ ++++|+.++|..+|+++|.+.+..++.
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEG------ECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCC------CeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888 888988888887 889999 999999999999999976 779999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Q 041006 83 ISEAYYLLKHVGGVSNAELAEIF 105 (333)
Q Consensus 83 ~AEg~~Ll~~~~Gld~~~ia~I~ 105 (333)
+.|...|+++ .|+|..++.+.+
T Consensus 226 ~nE~~~lae~-~GiD~~~v~~~~ 247 (415)
T PRK11064 226 ANELSLICAD-QGINVWELIRLA 247 (415)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHh
Confidence 9999999995 999999988873
No 34
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.77 E-value=4.1e-09 Score=101.57 Aligned_cols=155 Identities=12% Similarity=-0.075 Sum_probs=107.8
Q ss_pred CCccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceE--------EeCC---------CChhh
Q 041006 5 RRVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVT--------YIGE---------GGSSN 66 (333)
Q Consensus 5 ~G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~--------~~G~---------~GaG~ 66 (333)
+++.+++.|......++..+. ++|+||+.+.+++++|+|+..+.+ +. ++|. .|+++
T Consensus 127 ~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~------v~~~~di~g~~~~~~lkN~~ai~~G~~~ 200 (328)
T PRK14618 127 ARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFR------VYTSRDRVGVELGGALKNVIALAAGMVD 200 (328)
T ss_pred CCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEE------EEecCCccchhhhHHHHHHHHHHHHHHH
Confidence 466677777655555555567 889999999999999999998876 43 4564 58899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccc----hhhhhHHHHH--HHHhcccCCCCCchhhHHH
Q 041006 67 FVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKG----ELESFMVQIT--ADIFKVKDEYGEGELVDKI 140 (333)
Q Consensus 67 ~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G----~i~S~L~~i~--~~il~~~d~~~~~~lvd~~ 140 (333)
.+|+.+|......+.+++|++.++++ .|+|++.+.++ ...| ...|+..+.. ...+.++.. ...+ +..
T Consensus 201 ~~k~~~n~~~~~~~~~~~E~~~la~~-~G~~~~~~~~~---~~~gDl~~t~~s~~~rn~~~g~~~~~g~~-~~~~--~~~ 273 (328)
T PRK14618 201 GLKLGDNAKAALITRGLREMVRFGVA-LGAEEATFYGL---SGLGDLIATATSPHSRNRAAGEAIVRGVD-REHL--EAG 273 (328)
T ss_pred HhCCCccHHHHHHHHHHHHHHHHHHH-hCCCccchhcC---cchhheeeEeccCCCccHHHHHHHhCCCC-HHHH--HHc
Confidence 99999999999999999999999995 99999998877 4432 1223333322 112222200 0000 111
Q ss_pred HHhhcccCchHHHHHHHHHcCCChhHHHHHHH
Q 041006 141 LDKTGMKGTGKWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 141 ~d~~~~k~~~~~~v~~A~~~GvplP~~~aAl~ 172 (333)
+......+|.+++.+.+.+.++++|++..+..
T Consensus 274 ~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~ 305 (328)
T PRK14618 274 GKVVEGLYTVKALDAWAKAHGHDLPIVEAVAR 305 (328)
T ss_pred CCEEecHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 22233345788999999999999998776544
No 35
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.72 E-value=3.7e-08 Score=95.79 Aligned_cols=89 Identities=8% Similarity=-0.028 Sum_probs=72.8
Q ss_pred cCCccEE-ecccCCCHHHHhcCC-eecccC--------CHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHH
Q 041006 4 VRRVCLI-SAWGSPGARKARHGP-SLMPGG--------SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHN 73 (333)
Q Consensus 4 ~~G~~~l-dapVSGg~~gA~~G~-sim~GG--------~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N 73 (333)
..|+.++ .+||.|+ +.|. .+|+|| +++++++++|+|++++.+ ++++| .|+++.+|+++|
T Consensus 137 ~~gi~~~~p~~v~Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~------v~~~~-~g~~~~vk~~~n 205 (342)
T PRK12557 137 DVGISSMHPAAVPGT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKE------PYVVP-ADVVSAVADMGS 205 (342)
T ss_pred ccCeeecCCcccccc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCE------EEEeC-HHHHHHHHHHHH
Confidence 3466665 4444454 4444 677766 999999999999999986 76666 589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 74 GIEYGDMQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 74 ~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
.+.+..+++++|+|.++++ .+.++.++++-
T Consensus 206 ~l~av~~a~~aE~~~l~~~-~~~~p~~~~~~ 235 (342)
T PRK12557 206 LVTAVALSGVLDYYSVGTK-IIKAPKEMIEK 235 (342)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCHHHHHHH
Confidence 9999999999999999996 89999887665
No 36
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.68 E-value=2e-07 Score=89.25 Aligned_cols=137 Identities=12% Similarity=0.037 Sum_probs=97.8
Q ss_pred cCCccEEecccCCCHHHHhcCCeeccc---CCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHH
Q 041006 4 VRRVCLISAWGSPGARKARHGPSLMPG---GSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDM 80 (333)
Q Consensus 4 ~~G~~~ldapVSGg~~gA~~G~sim~G---G~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m 80 (333)
..+..+++.|+++.... ....|++ |+++++++++|+++.++++ ++++|+.+.|. ++||. .+
T Consensus 132 ~~~~~~~~hp~~p~~~~---~lveiv~~~~t~~~~~~~~~~~~~~lG~~------~v~v~~~~~G~---i~nrl----~~ 195 (308)
T PRK06129 132 GRERCLVAHPINPPYLI---PVVEVVPAPWTAPATLARAEALYRAAGQS------PVRLRREIDGF---VLNRL----QG 195 (308)
T ss_pred CcccEEEEecCCCcccC---ceEEEeCCCCCCHHHHHHHHHHHHHcCCE------EEEecCCCccH---HHHHH----HH
Confidence 45678999999873211 1256775 9999999999999999987 89999988886 45553 34
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHc
Q 041006 81 QLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAEL 160 (333)
Q Consensus 81 ~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~ 160 (333)
..++|++.|+++ .++|++++.++ ++.|...++.. ..+....++ ..+.++..... ++..+..+.+.+.
T Consensus 196 a~~~EA~~l~~~-g~~~~~~id~~---~~~~~g~~~~~--~gp~~~~d~-~~~~g~~~~~~------k~~~l~~~~~~~~ 262 (308)
T PRK06129 196 ALLREAFRLVAD-GVASVDDIDAV---IRDGLGLRWSF--MGPFETIDL-NAPGGVADYAQ------RYGPMYRRMAAER 262 (308)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHH---HHhccCCCccC--cCHHHHHhc-cccccHHHHHH------HHHHHHHhhcccc
Confidence 788999999996 89999999998 77776665443 122222222 12223322222 3577888889999
Q ss_pred CCChhHHHH
Q 041006 161 LIAALTIAG 169 (333)
Q Consensus 161 GvplP~~~a 169 (333)
+.|.|.+..
T Consensus 263 ~~~~~~~~~ 271 (308)
T PRK06129 263 GQPVPWDGE 271 (308)
T ss_pred CCCchhhHH
Confidence 999998754
No 37
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.65 E-value=5.9e-08 Score=92.71 Aligned_cols=155 Identities=12% Similarity=-0.023 Sum_probs=102.4
Q ss_pred CccEEecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCC-----------------CChhhH
Q 041006 6 RVCLISAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGE-----------------GGSSNF 67 (333)
Q Consensus 6 G~~~ldapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~-----------------~GaG~~ 67 (333)
...+++.|+++...++..+. .++.|++.+++++++++|+..+-+ +.+..+ .|.+..
T Consensus 129 ~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~d~~g~~~~k~~~N~~~~~~g~~~~ 202 (325)
T PRK00094 129 PIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFR------VYTNTDVIGVELGGALKNVIAIAAGIADG 202 (325)
T ss_pred ceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEE------EEecCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 45678888887766666666 778899999999999999988865 433322 377888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhh----hhHHHHH--HHHhcccCCCCCchhhHHHH
Q 041006 68 VKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELE----SFMVQIT--ADIFKVKDEYGEGELVDKIL 141 (333)
Q Consensus 68 vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~----S~L~~i~--~~il~~~d~~~~~~lvd~~~ 141 (333)
+|+.+|.+....+.+++|++.++++ .|+|++.+.++ ...|... |...+.. ...+..+.. ... ..+...
T Consensus 203 ~k~~~n~~~~~~~~~~~E~~~la~~-~G~d~~~~~~~---~~~~~~~~~~~s~~~~~~~~g~~~~~~~~-~~~-~~~~~~ 276 (325)
T PRK00094 203 LGLGDNARAALITRGLAEITRLGVA-LGANPETFLGL---AGLGDLVLTCTSPLSRNRRFGLALGQGKS-LEE-ALAEIG 276 (325)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHH-hCCChhhhhcc---cHhhhhhhhccCCCCccHHHHHHHHCCCC-HHH-HHHHcC
Confidence 9999999999999999999999995 99999998776 2222111 1111111 011211110 000 000000
Q ss_pred HhhcccCchHHHHHHHHHcCCChhHHHHHHH
Q 041006 142 DKTGMKGTGKWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 142 d~~~~k~~~~~~v~~A~~~GvplP~~~aAl~ 172 (333)
......+|.+.+++.|.++|+|+|+...+..
T Consensus 277 ~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~ 307 (325)
T PRK00094 277 MVAEGVRTAKAVYELAKKLGVEMPITEAVYA 307 (325)
T ss_pred CEeecHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 1122235688899999999999998766544
No 38
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.53 E-value=1.4e-07 Score=90.18 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=97.0
Q ss_pred cEEecccC--CCHHHHhc---C--C-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCC-----------------C
Q 041006 8 CLISAWGS--PGARKARH---G--P-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGE-----------------G 62 (333)
Q Consensus 8 ~~ldapVS--Gg~~gA~~---G--~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~-----------------~ 62 (333)
+|.++||+ +|+..|.. | . ++|+||+++++++++|+|+.++-+ +++.++ .
T Consensus 100 ~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~------~~~~~d~~G~~~~~alkNv~ai~~ 173 (308)
T PRK14619 100 AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFR------VYTNSDPLGTELGGTLKNVIAIAA 173 (308)
T ss_pred HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEE------EEecCCchhhhhHHHHHHHHHHHH
Confidence 46788995 55544432 3 4 789999999999999999998865 665554 2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCch------h
Q 041006 63 GSSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGE------L 136 (333)
Q Consensus 63 GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~------l 136 (333)
|.+..+|+.+|.+....+.+++|++.++++ .|++++.+.++ .|...+++.. .....+++ ...+ .
T Consensus 174 G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~-~G~~~~t~~~~-----~g~gd~~~t~---~~~~~rn~-~~g~~l~~g~~ 243 (308)
T PRK14619 174 GVCDGLQLGTNAKAALVTRALPEMIRVGTH-LGAQTETFYGL-----SGLGDLLATC---TSPLSRNY-QVGYGLAQGKS 243 (308)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHHHHHH-hCCCccccccc-----cchhhhheee---cCCCCccH-HHHHHHHCCCC
Confidence 223445599999999999999999999996 99998887553 1222232210 11111110 0001 1
Q ss_pred hHHHHHhhcc----cCchHHHHHHHHHcCCChhHHHHHHH
Q 041006 137 VDKILDKTGM----KGTGKWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 137 vd~~~d~~~~----k~~~~~~v~~A~~~GvplP~~~aAl~ 172 (333)
++...+...+ .+|.+.+.+.+.+.|+++|++.++..
T Consensus 244 ~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~ 283 (308)
T PRK14619 244 LEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYR 283 (308)
T ss_pred HHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 1111221111 34678899999999999998776544
No 39
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.50 E-value=3.2e-07 Score=87.49 Aligned_cols=91 Identities=22% Similarity=0.526 Sum_probs=78.7
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCCCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHH
Q 041006 207 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPE 276 (333)
Q Consensus 207 ~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~ 276 (333)
..+++++.+++++++++|++|+|||.+++++ +|++|+.++++||++| +.++|+++|.+.+
T Consensus 165 G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------ 234 (298)
T TIGR00872 165 GSGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------ 234 (298)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------
Confidence 4578999999999999999999999999986 8999999999999998 6788988886544
Q ss_pred HHHHHHHh-------------------------------cc-CcchhHHHHHhhhhcCccccc
Q 041006 277 FAREMVQR-------------------------------RA-RLPGNLVQAQRDLFGAHTYER 307 (333)
Q Consensus 277 ~~~~~~~~-------------------------------~~-~lp~~liqaqRd~FGaH~~~r 307 (333)
|.+.+++. +. ++|+|||||||||||+|+|++
T Consensus 235 ~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 235 FSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCC
Confidence 45554333 44 899999999999999999986
No 40
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.34 E-value=1.9e-06 Score=86.17 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=81.2
Q ss_pred CCccEEe--------cccCCCHHHHhcCC--eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHH
Q 041006 5 RRVCLIS--------AWGSPGARKARHGP--SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNG 74 (333)
Q Consensus 5 ~G~~~ld--------apVSGg~~gA~~G~--sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~ 74 (333)
.|..+.| .||++|...+..+. -++.|++++..+.++++++.+... .++++++.++|..+|+++|+
T Consensus 139 ~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~-----~~~~~~~~~~AE~~Kl~~N~ 213 (425)
T PRK15182 139 SGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISA-----GTYKAESIKVAEAAKVIENT 213 (425)
T ss_pred cCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhc-----CcEEecCHHHHHHHHHHHHH
Confidence 4777777 66777777777664 588888899999999999999842 16899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 75 IEYGDMQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 75 l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
+.+..++.+.|...++++ .|+|..++.++
T Consensus 214 ~~av~Ia~~NE~a~lae~-~GiD~~~v~~a 242 (425)
T PRK15182 214 QRDLNIALVNELAIIFNR-LNIDTEAVLRA 242 (425)
T ss_pred HHHHHHHHHHHHHHHHHH-hCcCHHHHHHH
Confidence 999999999999999995 99999998887
No 41
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.05 E-value=1.2e-05 Score=79.51 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=72.6
Q ss_pred CHHHHhcCC---------eecccCCHHHHHHHHHHHHH--HhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHHHH
Q 041006 17 GARKARHGP---------SLMPGGSFEAYNNIQGILQK--VAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLISE 85 (333)
Q Consensus 17 g~~gA~~G~---------sim~GG~~~a~~~v~pvL~~--i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~AE 85 (333)
+|+.++.|. .+|+||+.+..+++.++|.. ++.+ ..+++|+.+++..+|+++|++.+..++.+.|
T Consensus 139 ~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE 213 (388)
T PRK15057 139 SPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQN-----IPTLFTDSTEAEAIKLFANTYLAMRVAYFNE 213 (388)
T ss_pred CcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCC-----CceeeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899995 58999999999999999965 5543 2347999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHH
Q 041006 86 AYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 86 g~~Ll~~~~Gld~~~ia~I 104 (333)
...++++ .|+|..++.++
T Consensus 214 ~a~lae~-~GiD~~eV~~a 231 (388)
T PRK15057 214 LDSYAES-LGLNTRQIIEG 231 (388)
T ss_pred HHHHHHH-hCcCHHHHHHH
Confidence 9999995 99999999888
No 42
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.03 E-value=1.9e-05 Score=76.22 Aligned_cols=146 Identities=15% Similarity=0.085 Sum_probs=88.4
Q ss_pred cCCCHHHHh---cCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHH----------
Q 041006 14 GSPGARKAR---HGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGD---------- 79 (333)
Q Consensus 14 VSGg~~gA~---~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~---------- 79 (333)
+++|+..+. .|+ .++ +.+.++++.++|+..+-+ +.+.++.+.+...|++.|.+....
T Consensus 135 ~~~~pg~~~~~~~g~l~~~---~~~~~~~~~~~l~~~g~~------~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l 205 (341)
T PRK08229 135 ISRGPGAFHQGTSGALAIE---ASPALRPFAAAFARAGLP------LVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEE 205 (341)
T ss_pred EecCCceEEecCCCceEec---CCchHHHHHHHHHhcCCC------ceecchhHHHHHHHHHHHhccHHHHHhCCchHHH
Confidence 465555544 455 343 346689999999988865 889999999999999999754433
Q ss_pred ----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHhccch--hhhhHHHHHH-HHhcccCCCCCchhhHHHHHhhcc
Q 041006 80 ----------MQLISEAYYLLKHVGGVSNAELAEIFDEWNKGE--LESFMVQITA-DIFKVKDEYGEGELVDKILDKTGM 146 (333)
Q Consensus 80 ----------m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~--i~S~L~~i~~-~il~~~d~~~~~~lvd~~~d~~~~ 146 (333)
+.++.|++.++++ .|++++.+..+.+.+-.-+ +.+++.+... .++..+....+..+.|... ..
T Consensus 206 ~~~~~~~~~~~~~~~E~~~va~a-~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sm~~D~~~---~r 281 (341)
T PRK08229 206 LAQRSYRRCLALAQREALRVLKA-AGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLARSSMSDDLAA---GR 281 (341)
T ss_pred hcCchHHHHHHHHHHHHHHHHHH-cCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCccCchHHHHHHc---CC
Confidence 3789999999996 8998776544422221111 1233333322 2332221101111111110 00
Q ss_pred cC----chHHHHHHHHHcCCChhHHHHHHH
Q 041006 147 KG----TGKWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 147 k~----~~~~~v~~A~~~GvplP~~~aAl~ 172 (333)
+. .-.+++..|.++|+|+|.......
T Consensus 282 ~tEi~~i~G~i~~~a~~~gv~~P~~~~~~~ 311 (341)
T PRK08229 282 ATEIDWINGEIVRLAGRLGAPAPVNARLCA 311 (341)
T ss_pred cchHHHHhhHHHHHHHHcCCCCcHHHHHHH
Confidence 00 112689999999999998776554
No 43
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.86 E-value=3.8e-05 Score=78.38 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=74.3
Q ss_pred ccCCccEEecccCCCHHHHhcCC-eecccCC---HHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGP-SLMPGGS---FEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYG 78 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~-sim~GG~---~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a 78 (333)
..++..++++|++. ...++ ..|++|+ ++++++++|+|+.++.+ ++++| |+++|.+...
T Consensus 129 ~~~~r~~~~hP~nP----~~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~------~v~~~--------k~~~gfi~nr 190 (495)
T PRK07531 129 THPERLFVAHPYNP----VYLLPLVELVGGGKTSPETIRRAKEILREIGMK------PVHIA--------KEIDAFVGDR 190 (495)
T ss_pred CCcceEEEEecCCC----cccCceEEEcCCCCCCHHHHHHHHHHHHHcCCE------EEeec--------CCCcchhHHH
Confidence 34677899999873 24567 8899998 79999999999999987 88888 5788888888
Q ss_pred HHHHH-HHHHHHHHHhCCCCHHHHHHHHHHhccchh
Q 041006 79 DMQLI-SEAYYLLKHVGGVSNAELAEIFDEWNKGEL 113 (333)
Q Consensus 79 ~m~a~-AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i 113 (333)
.+.++ +|++.|.++ .++|++++.++ ++.|..
T Consensus 191 l~~a~~~EA~~L~~~-g~~s~~~id~~---~~~g~g 222 (495)
T PRK07531 191 LLEALWREALWLVKD-GIATTEEIDDV---IRYSFG 222 (495)
T ss_pred HHHHHHHHHHHHHHc-CCCCHHHHHHH---HhhccC
Confidence 88885 999999996 89999999999 555543
No 44
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.55 E-value=0.00019 Score=69.16 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=63.9
Q ss_pred ccCCccEEecc-------cCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHH
Q 041006 3 PVRRVCLISAW-------GSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGI 75 (333)
Q Consensus 3 ~~~G~~~ldap-------VSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l 75 (333)
+-.|+||++.| |++|+ +++++++++++|+|+.++++ ++++|+.+ |. + +
T Consensus 132 r~~g~Hf~~Pp~~~~lvEVv~g~-----------~t~~e~~~~~~~ll~~lGk~------~v~v~d~~-Gf----i---~ 186 (314)
T PRK08269 132 RFLNAHWLNPAYLMPLVEVSPSD-----------ATDPAVVDRLAALLERIGKV------PVVCGPSP-GY----I---V 186 (314)
T ss_pred cEEEEecCCccccCceEEEeCCC-----------CCCHHHHHHHHHHHHHcCCc------EEEecCCC-Cc----c---h
Confidence 34689999999 99987 89999999999999999987 88999865 43 2 3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 76 EYGDMQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 76 ~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
....+..++|++.++++ .++|++++.++
T Consensus 187 nri~~~~l~EAl~l~e~-g~~~~e~iD~a 214 (314)
T PRK08269 187 PRIQALAMNEAARMVEE-GVASAEDIDKA 214 (314)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 44456678999999996 88999999888
No 45
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=97.51 E-value=0.00034 Score=71.66 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=64.2
Q ss_pred CCccEEe-cccCCCHHHHhcCCeecccC---CHHHHHHHHHHHHHHhccCCCCCceEEeCC-CChhhHHHHHHHHHHHHH
Q 041006 5 RRVCLIS-AWGSPGARKARHGPSLMPGG---SFEAYNNIQGILQKVAAQVDDGPCVTYIGE-GGSSNFVKMVHNGIEYGD 79 (333)
Q Consensus 5 ~G~~~ld-apVSGg~~gA~~G~sim~GG---~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~-~GaG~~vKlv~N~l~~a~ 79 (333)
.|++|++ +||+ ..+.|++| +++++++++++++.+++. ++++|+ +| .+.|-+...
T Consensus 141 ~G~hff~Pa~v~--------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~------pv~v~d~pG------fi~Nrll~~- 199 (507)
T PRK08268 141 AGLHFFNPVPLM--------KLVEVVSGLATDPAVADALYALARAWGKT------PVRAKDTPG------FIVNRAARP- 199 (507)
T ss_pred EEEeecCCcccC--------eeEEEeCCCCCCHHHHHHHHHHHHHcCCc------eEEecCCCC------hHHHHHHHH-
Confidence 3999999 9998 13778876 999999999999999987 789997 56 366666654
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 80 MQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 80 m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
.++|++.|+++ .++++++|.++
T Consensus 200 --~~~Ea~~l~~~-g~~~~~~iD~a 221 (507)
T PRK08268 200 --YYTEALRVLEE-GVADPATIDAI 221 (507)
T ss_pred --HHHHHHHHHHc-CCCCHHHHHHH
Confidence 88999999996 78999999999
No 46
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=97.29 E-value=0.0008 Score=68.91 Aligned_cols=80 Identities=15% Similarity=0.038 Sum_probs=66.7
Q ss_pred ccCCccEEe-cccCCCHHHHhcCCeecccC---CHHHHHHHHHHHHHHhccCCCCCceEEeCC-CChhhHHHHHHHHHHH
Q 041006 3 PVRRVCLIS-AWGSPGARKARHGPSLMPGG---SFEAYNNIQGILQKVAAQVDDGPCVTYIGE-GGSSNFVKMVHNGIEY 77 (333)
Q Consensus 3 ~~~G~~~ld-apVSGg~~gA~~G~sim~GG---~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~-~GaG~~vKlv~N~l~~ 77 (333)
+..|.+|++ +||++ ...|++| +++++++++++++.+++. ++++|+ +|. +.|-|..
T Consensus 137 r~~G~HFf~Papv~~--------LvEvv~g~~Ts~e~~~~~~~l~~~lgk~------pv~v~d~pGf------i~Nrl~~ 196 (503)
T TIGR02279 137 RVAGLHFFNPAPVMA--------LVEVVSGLATAAEVAEQLYETALAWGKQ------PVHCHSTPGF------IVNRVAR 196 (503)
T ss_pred ceEEEeccCccccCc--------eEEEeCCCCCCHHHHHHHHHHHHHcCCe------eeEeCCCCCc------HHHHHHH
Confidence 356999999 99983 4889999 999999999999999997 789996 553 5555553
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 041006 78 GDMQLISEAYYLLKHVGGVSNAELAEIFD 106 (333)
Q Consensus 78 a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~ 106 (333)
..++|++.|+++ .+.++++|-+++.
T Consensus 197 ---~~~~EA~~l~e~-g~a~~~~ID~al~ 221 (503)
T TIGR02279 197 ---PYYAEALRALEE-QVAAPAVLDAALR 221 (503)
T ss_pred ---HHHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 588999999996 7899999999943
No 47
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.25 E-value=0.0011 Score=62.84 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=61.7
Q ss_pred CCccEEecccCCCHHHHhcCC-eecccC---CHHHHHHHHHHHHHHhccCCCCCceEEeCC-CChhhHHHHHHHHHHHHH
Q 041006 5 RRVCLISAWGSPGARKARHGP-SLMPGG---SFEAYNNIQGILQKVAAQVDDGPCVTYIGE-GGSSNFVKMVHNGIEYGD 79 (333)
Q Consensus 5 ~G~~~ldapVSGg~~gA~~G~-sim~GG---~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~-~GaG~~vKlv~N~l~~a~ 79 (333)
.|++|+ +||+++ + ..|++| +++++++++|+|+.++++ ++++|+ +|- +.|-|.+.
T Consensus 136 ~g~h~~-~Pv~~~-------~Lve~v~g~~t~~~~~~~~~~~l~~lg~~------~v~v~d~~Gf------~~nRl~~~- 194 (288)
T PRK09260 136 IAMHFF-NPVHKM-------KLVELIRGLETSDETVQVAKEVAEQMGKE------TVVVNEFPGF------VTSRISAL- 194 (288)
T ss_pred EEEecC-CCcccC-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCe------EEEecCcccH------HHHHHHHH-
Confidence 589999 999885 6 889999 999999999999999987 889986 442 56666665
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 80 MQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 80 m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
.+.|++.++++ .-.++++|-.+
T Consensus 195 --~~~ea~~~~~~-gv~~~~~iD~~ 216 (288)
T PRK09260 195 --VGNEAFYMLQE-GVATAEDIDKA 216 (288)
T ss_pred --HHHHHHHHHHc-CCCCHHHHHHH
Confidence 44799999985 22578888777
No 48
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.24 E-value=0.0055 Score=57.05 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=67.4
Q ss_pred cEE-ecccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEe---------CCCChhhHHHHHHHHHH
Q 041006 8 CLI-SAWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYI---------GEGGSSNFVKMVHNGIE 76 (333)
Q Consensus 8 ~~l-dapVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~---------G~~GaG~~vKlv~N~l~ 76 (333)
+++ .+|..+...++..+. +.+.+++++.+++++|+|+.+|. ++|+ |..|+|.. +.
T Consensus 111 ~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-------~~~~~e~~~d~~~~~~g~g~a-------~~ 176 (266)
T PLN02688 111 RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-------IWVVDEKLLDAVTGLSGSGPA-------YI 176 (266)
T ss_pred CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-------EEEeCHHHcchhHhhhcCHHH-------HH
Confidence 577 489988877776665 56777899999999999999996 6787 44677765 37
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhh
Q 041006 77 YGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELES 115 (333)
Q Consensus 77 ~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S 115 (333)
+..+.+++|+ +.+ .|+|+++..++ ...+...+
T Consensus 177 ~~~~~a~~ea---~~~-~Gl~~~~a~~~---~~~~~~gs 208 (266)
T PLN02688 177 FLAIEALADG---GVA-AGLPRDVALSL---AAQTVLGA 208 (266)
T ss_pred HHHHHHHHHH---HHH-cCCCHHHHHHH---HHHHHHHH
Confidence 8889999999 554 89999999998 44444433
No 49
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.16 E-value=0.0022 Score=60.44 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=59.5
Q ss_pred ecccCCC---HHHHhcCC-eecccCC---HHHHHHHHHHHHHHhccCCCCCceE------E--eCCCChhhHHHHHHHHH
Q 041006 11 SAWGSPG---ARKARHGP-SLMPGGS---FEAYNNIQGILQKVAAQVDDGPCVT------Y--IGEGGSSNFVKMVHNGI 75 (333)
Q Consensus 11 dapVSGg---~~gA~~G~-sim~GG~---~~a~~~v~pvL~~i~~~~~~~p~v~------~--~G~~GaG~~vKlv~N~l 75 (333)
++||+|+ ...+..+. ++|++|+ ++.++.++|+|+.+|.. ++ | +|..|+|.. +
T Consensus 114 ~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~------~~v~e~~~~~~~a~~Gsgpa-------~ 180 (279)
T PRK07679 114 DVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLV------SVVEEEDMHAVTALSGSGPA-------Y 180 (279)
T ss_pred CCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcE------EEeCHHHhhhHHHhhcCHHH-------H
Confidence 3688988 55777666 8999988 66999999999999973 54 5 787788765 3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 041006 76 EYGDMQLISEAYYLLKHVGGVSNAELAEIF 105 (333)
Q Consensus 76 ~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~ 105 (333)
.+..+.+++|+ +. ..|||.++..+++
T Consensus 181 ~~~~~eal~e~---~~-~~Gl~~~~a~~~~ 206 (279)
T PRK07679 181 IYYVVEAMEKA---AK-KIGLKEDVAKSLI 206 (279)
T ss_pred HHHHHHHHHHH---HH-HcCCCHHHHHHHH
Confidence 55555555555 56 4899999999983
No 50
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.90 E-value=0.0034 Score=59.01 Aligned_cols=87 Identities=9% Similarity=0.079 Sum_probs=66.4
Q ss_pred CccEEec-ccCCC----HHHHh----cCC-eeccc---CCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHH
Q 041006 6 RVCLISA-WGSPG----ARKAR----HGP-SLMPG---GSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVH 72 (333)
Q Consensus 6 G~~~lda-pVSGg----~~gA~----~G~-sim~G---G~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~ 72 (333)
+..|+++ |++|+ +..|. .|. .++++ ++++.++.++++|+.+|.+ ++++++.+....++++.
T Consensus 106 ~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~------~~~~~~~~hD~~~a~vs 179 (275)
T PRK08507 106 RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMR------IVYMDAKEHDLHAAYIS 179 (275)
T ss_pred CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCE------EEEeCHHHHHHHHHHHh
Confidence 3579999 99985 56654 576 66765 5788999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 73 NGIEYGDMQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 73 N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
+... ....++++++. . +.+.+++.++
T Consensus 180 ~lph-~~a~~l~~~~~--~---~~~~~~~~~~ 205 (275)
T PRK08507 180 HLPH-IISFALANTVL--K---EEDERNIFDL 205 (275)
T ss_pred HHHH-HHHHHHHHHHH--h---cCChHHHHhh
Confidence 9964 56666666652 2 4555555444
No 51
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.80 E-value=0.0059 Score=60.24 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=72.6
Q ss_pred cEE-ecccCCCHHHHhcCC-eecccC-CHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHHH
Q 041006 8 CLI-SAWGSPGARKARHGP-SLMPGG-SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLIS 84 (333)
Q Consensus 8 ~~l-dapVSGg~~gA~~G~-sim~GG-~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~A 84 (333)
.|| ..|+.|.+.....|. .++++| ++++++.++++++.+|++ ++++++.+....|+++. .+ ..+.+++
T Consensus 192 ~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~------v~~~~~~~HD~~~a~vs-hL--pH~~a~a 262 (374)
T PRK11199 192 PVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGAR------LHRISAVEHDQNMAFIQ-AL--RHFATFA 262 (374)
T ss_pred CEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCE------EEECCHHHHHHHHHHHH-HH--HHHHHHH
Confidence 588 999999988878888 777777 678999999999999997 99999999999999999 44 8889999
Q ss_pred HHHHHHHHhCCCCHHHHHH
Q 041006 85 EAYYLLKHVGGVSNAELAE 103 (333)
Q Consensus 85 Eg~~Ll~~~~Gld~~~ia~ 103 (333)
++..+.+ .+++.+++.+
T Consensus 263 l~~~l~~--~~~~~~~~~~ 279 (374)
T PRK11199 263 YGLHLAK--ENVDLEQLLA 279 (374)
T ss_pred HHHHHHH--cCCCHHHHHH
Confidence 9999876 4788777544
No 52
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.49 E-value=0.01 Score=56.57 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=58.4
Q ss_pred CccEEecccCCCHHHHhcCCeecccC--CHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHH
Q 041006 6 RVCLISAWGSPGARKARHGPSLMPGG--SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLI 83 (333)
Q Consensus 6 G~~~ldapVSGg~~gA~~G~sim~GG--~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~ 83 (333)
|++|.++|..+. ...+++|. ++++++.++++|+.++.+ ++++++...|. +++|.+. ..+
T Consensus 135 g~h~~~p~~~~~------l~~i~~g~~t~~~~~~~v~~l~~~~G~~------~v~~~~d~~G~---i~nr~~~----~~~ 195 (311)
T PRK06130 135 GTHFFTPADVIP------LVEVVRGDKTSPQTVATTMALLRSIGKR------PVLVKKDIPGF---IANRIQH----ALA 195 (311)
T ss_pred EEccCCCCccCc------eEEEeCCCCCCHHHHHHHHHHHHHcCCE------EEEEcCCCCCc---HHHHHHH----HHH
Confidence 556665554321 11344443 699999999999999986 78998754454 6777753 568
Q ss_pred HHHHHHHHHhCCCCHHHHHHH
Q 041006 84 SEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 84 AEg~~Ll~~~~Gld~~~ia~I 104 (333)
+|++.|+++ .++|++++.++
T Consensus 196 ~Ea~~l~~~-g~~~~~~id~~ 215 (311)
T PRK06130 196 REAISLLEK-GVASAEDIDEV 215 (311)
T ss_pred HHHHHHHHc-CCCCHHHHHHH
Confidence 999999995 88999999988
No 53
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.20 E-value=0.0062 Score=57.44 Aligned_cols=70 Identities=7% Similarity=0.035 Sum_probs=58.3
Q ss_pred CccEEe-cccCCCH-HHHhcCC-eeccc----------CCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHH
Q 041006 6 RVCLIS-AWGSPGA-RKARHGP-SLMPG----------GSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVH 72 (333)
Q Consensus 6 G~~~ld-apVSGg~-~gA~~G~-sim~G----------G~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~ 72 (333)
+..|++ .|+.|++ .+++.|. .+|.| +++++++.++++++.+|++ ++++++.+....++++.
T Consensus 105 ~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~------~v~~~~~~hD~~~a~~s 178 (279)
T PRK07417 105 HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSK------IYTADPEEHDRAVALIS 178 (279)
T ss_pred hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCE------EEEcCHHHHHHHHHHHc
Confidence 346888 7999997 6777776 56655 6899999999999999986 88999999999999999
Q ss_pred HHHHHHHHH
Q 041006 73 NGIEYGDMQ 81 (333)
Q Consensus 73 N~l~~a~m~ 81 (333)
+...+....
T Consensus 179 hlp~~~a~~ 187 (279)
T PRK07417 179 HLPVMVSAA 187 (279)
T ss_pred chHHHHHHH
Confidence 988765543
No 54
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.11 E-value=0.015 Score=55.15 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=65.4
Q ss_pred CccEEe-cccCCCHHHHhcCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHH
Q 041006 6 RVCLIS-AWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLI 83 (333)
Q Consensus 6 G~~~ld-apVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~ 83 (333)
|++|.+ +|++++.+ +..|+ + ++++++++.++++.+++. ++++++.+.....|+++|.+
T Consensus 141 g~hf~~P~~~~~~vE-v~~g~~T-----~~e~~~~~~~~~~~lgk~------~v~v~d~pgfv~nRl~~~~~-------- 200 (291)
T PRK06035 141 GMHWFNPAPVMKLIE-VVRAALT-----SEETFNTTVELSKKIGKI------PIEVADVPGFFTTRFIEGWL-------- 200 (291)
T ss_pred EEecCCCcccCccEE-EeCCCCC-----CHHHHHHHHHHHHHcCCe------EEEeCCCCCeeHHHHHHHHH--------
Confidence 788998 89999876 45777 5 999999999999999987 88999877788889988875
Q ss_pred HHHHHHHHHhCC-CCHHHHHHH
Q 041006 84 SEAYYLLKHVGG-VSNAELAEI 104 (333)
Q Consensus 84 AEg~~Ll~~~~G-ld~~~ia~I 104 (333)
.|++.++.+ | .++++|-.+
T Consensus 201 ~ea~~~~~~--g~a~~~~iD~~ 220 (291)
T PRK06035 201 LEAIRSFEI--GIATIKDIDEM 220 (291)
T ss_pred HHHHHHHHc--CCCCHHHHHHH
Confidence 788888885 6 478888888
No 55
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.70 E-value=0.033 Score=52.70 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=58.4
Q ss_pred CCccEEe-cccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHH
Q 041006 5 RRVCLIS-AWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLI 83 (333)
Q Consensus 5 ~G~~~ld-apVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~ 83 (333)
.|++|++ +|++++.+ -...++++++++++++++|+.++.+ ++++++.+ -+++++.+. ..+
T Consensus 138 ~g~h~~~p~~~~~~ve-----i~~g~~t~~~~~~~~~~~~~~~gk~------~v~~~d~p----g~i~nRl~~----~~~ 198 (292)
T PRK07530 138 IGIHFMNPVPVMKLVE-----LIRGIATDEATFEAAKEFVTKLGKT------ITVAEDFP----AFIVNRILL----PMI 198 (292)
T ss_pred EEeeccCCcccCceEE-----EeCCCCCCHHHHHHHHHHHHHcCCe------EEEecCcC----ChHHHHHHH----HHH
Confidence 3889999 67665432 0223679999999999999999986 77888744 366776653 346
Q ss_pred HHHHHHHHHhCCC-CHHHHHHH
Q 041006 84 SEAYYLLKHVGGV-SNAELAEI 104 (333)
Q Consensus 84 AEg~~Ll~~~~Gl-d~~~ia~I 104 (333)
.|++.++.+ |+ +++++-.+
T Consensus 199 ~ea~~~~~~--g~~~~~~iD~~ 218 (292)
T PRK07530 199 NEAIYTLYE--GVGSVEAIDTA 218 (292)
T ss_pred HHHHHHHHh--CCCCHHHHHHH
Confidence 788999986 55 78888777
No 56
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.43 E-value=0.18 Score=47.68 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCccEEecccCCCHHHHhcCC-eeccc---CCHHHHHHHHHHHHHHhccCCCCCceEEeCCC-ChhhHHHHHHHHHHHHH
Q 041006 5 RRVCLISAWGSPGARKARHGP-SLMPG---GSFEAYNNIQGILQKVAAQVDDGPCVTYIGEG-GSSNFVKMVHNGIEYGD 79 (333)
Q Consensus 5 ~G~~~ldapVSGg~~gA~~G~-sim~G---G~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~-GaG~~vKlv~N~l~~a~ 79 (333)
.|++|++.|+++ + ..++. ++++++++++++|+.++.. +.++|+. | . +.|-|.+..
T Consensus 138 ~g~h~~~pp~~~--------~lveiv~g~~t~~e~~~~~~~ll~~lG~~------~~~~~d~~g-----~-i~nri~~~~ 197 (295)
T PLN02545 138 IGMHFMNPPPIM--------KLVEIIRGADTSDEVFDATKALAERFGKT------VVCSQDYPG-----F-IVNRILMPM 197 (295)
T ss_pred EEEeccCCcccC--------ceEEEeCCCCCCHHHHHHHHHHHHHcCCe------eEEecCccc-----H-HHHHHHHHH
Confidence 588999999874 4 44554 5999999999999999985 7788873 4 2 455554443
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 80 MQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 80 m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
+.|++.++.+ .-.+++++-.+
T Consensus 198 ---~~ea~~~~~~-gv~~~~~iD~~ 218 (295)
T PLN02545 198 ---INEAFYALYT-GVASKEDIDTG 218 (295)
T ss_pred ---HHHHHHHHHc-CCCCHHHHHHH
Confidence 6899999996 33678887776
No 57
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.84 E-value=0.57 Score=47.26 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=62.6
Q ss_pred CCccEEec-ccCCCHHHHhcCC-eecccC---CHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHH
Q 041006 5 RRVCLISA-WGSPGARKARHGP-SLMPGG---SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGD 79 (333)
Q Consensus 5 ~G~~~lda-pVSGg~~gA~~G~-sim~GG---~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~ 79 (333)
.|+.|+++ |+.|.......|. .+++.+ +.+.++.++++|+.++.+ +.++++... -+++.+.-....
T Consensus 108 ~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~------v~~~~~e~H---D~~~a~vs~lph 178 (437)
T PRK08655 108 EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGAR------VIVTSPEEH---DRIMSVVQGLTH 178 (437)
T ss_pred CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCE------EEECCHHHH---HHHHHHHHHHHH
Confidence 37889998 9998666667888 666654 588999999999999986 888887643 344444444555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Q 041006 80 MQLISEAYYLLKHVGGVSNAELAE 103 (333)
Q Consensus 80 m~a~AEg~~Ll~~~~Gld~~~ia~ 103 (333)
+.+++.+..+ ++ .|++.++...
T Consensus 179 ~~a~al~~~l-~~-~g~~~~~~~~ 200 (437)
T PRK08655 179 FAYISIASTL-KR-LGVDIKESRK 200 (437)
T ss_pred HHHHHHHHHH-HH-cCCCHHHHHh
Confidence 5566665555 42 6888777543
No 58
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.26 E-value=0.18 Score=47.98 Aligned_cols=95 Identities=23% Similarity=0.468 Sum_probs=71.7
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCCCCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHH
Q 041006 207 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPE 276 (333)
Q Consensus 207 ~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~ 276 (333)
...++++.++++++++.+.+++|++.+.+++. |++|+.++.++|+.| ..+.+.+++...++ +..
T Consensus 166 g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g----~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l--~~~ 239 (299)
T PRK12490 166 GSGHFLKMVHNGIEYGMMQAYAEGLELLDKSD----FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGI--KGY 239 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhh--hHH
Confidence 45789999999999999999999999998876 999999999999963 23344443321111 222
Q ss_pred HHH---------HHHHh------------------ccCcc-hhHHHHHhhhhcCccccc
Q 041006 277 FAR---------EMVQR------------------RARLP-GNLVQAQRDLFGAHTYER 307 (333)
Q Consensus 277 ~~~---------~~~~~------------------~~~lp-~~liqaqRd~FGaH~~~r 307 (333)
+++ ...+. .+.+| .+++||||||||+|+|+.
T Consensus 240 ~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~~~~~ 298 (299)
T PRK12490 240 VNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGHAVKT 298 (299)
T ss_pred HHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCCCCCC
Confidence 222 22221 88999 999999999999999974
No 59
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.05 E-value=0.4 Score=45.52 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=61.4
Q ss_pred ccC--CccEEe-cccCCCHHHHhcCC-eecccCCHHHHHHHHHHHH-HHhccCCCCCceEEeCC-CChhhHHHHHHHHHH
Q 041006 3 PVR--RVCLIS-AWGSPGARKARHGP-SLMPGGSFEAYNNIQGILQ-KVAAQVDDGPCVTYIGE-GGSSNFVKMVHNGIE 76 (333)
Q Consensus 3 ~~~--G~~~ld-apVSGg~~gA~~G~-sim~GG~~~a~~~v~pvL~-~i~~~~~~~p~v~~~G~-~GaG~~vKlv~N~l~ 76 (333)
+++ |++|++ +|+++.. + ..+.++++++++++.+++. .+++. ++.+++ +| - +-|-|.
T Consensus 136 ~~r~~g~hf~~P~~~~~lv------Elv~~~~T~~~~~~~~~~~~~~~lgk~------pv~v~d~pG--f----i~nRi~ 197 (286)
T PRK07819 136 PGRVLGLHFFNPVPVLPLV------ELVPTLVTSEATVARAEEFASDVLGKQ------VVRAQDRSG--F----VVNALL 197 (286)
T ss_pred CccEEEEecCCCcccCceE------EEeCCCCCCHHHHHHHHHHHHHhCCCC------ceEecCCCC--h----HHHHHH
Confidence 345 899999 8898877 5 7799999999999999988 58886 677876 44 2 455554
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 77 YGDMQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 77 ~a~m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
+.. +.|++.++.+ .-.++++|-.+
T Consensus 198 ~~~---~~Ea~~ll~e-Gv~~~~dID~~ 221 (286)
T PRK07819 198 VPY---LLSAIRMVES-GFATAEDIDKA 221 (286)
T ss_pred HHH---HHHHHHHHHh-CCCCHHHHHHH
Confidence 444 4799999986 23678888887
No 60
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=91.70 E-value=1.1 Score=35.54 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHh
Q 041006 64 SSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDK 143 (333)
Q Consensus 64 aG~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~ 143 (333)
.+..+|++.|++.+..++..-|-..+.++ .|+|..++.+. ++...-++ ...+.... ..++.-+.
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~-~giD~~~V~~~---~~~d~ri~------~~~~~pg~-g~GG~Clp----- 66 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEK-LGIDVYEVIEA---ANTDPRIG------PHYLRPGP-GFGGSCLP----- 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSBHHHHHHH---HHTSTTTT------SSS-S-SS-S--SSCHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HccCcccc------cccCCCCC-CCCCcchh-----
Confidence 35789999999999999999999999995 89999998888 43321111 01111111 01111111
Q ss_pred hcccCchHHHHHHHHHcCCChhHHHHHHH
Q 041006 144 TGMKGTGKWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 144 ~~~k~~~~~~v~~A~~~GvplP~~~aAl~ 172 (333)
+|....+..+.+.|++.+.+.+++.
T Consensus 67 ----kD~~~L~~~~~~~g~~~~ll~~~~~ 91 (96)
T PF00984_consen 67 ----KDPYALIYLAKELGYPPQLLEAVIN 91 (96)
T ss_dssp ----HHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1345566788999999997766554
No 61
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.51 E-value=2.8 Score=39.47 Aligned_cols=141 Identities=17% Similarity=0.162 Sum_probs=71.1
Q ss_pred CccEEecccCC-CHHHHhcCC-eecccC----CHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHH-
Q 041006 6 RVCLISAWGSP-GARKARHGP-SLMPGG----SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYG- 78 (333)
Q Consensus 6 G~~~ldapVSG-g~~gA~~G~-sim~GG----~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a- 78 (333)
|+.++.+++.+ |..... ++ .+.+|. ..+..+++..+|...+-. +...-+.-...+.|++.|+....
T Consensus 123 g~~~~~~~~~~~g~v~~~-~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~------~~~~~di~~~~w~Kl~~N~~~n~l 195 (305)
T PRK12921 123 GVVFISAQLNGDGVVVQR-ADHRLTFGEIPGQRSERTRAVRDALAGARLE------VVLSENIRQDIWRKLLFNAVMNGM 195 (305)
T ss_pred EEEEEEEEECCCeEEEEc-CCCcEEEcCCCCCcCHHHHHHHHHHHhCCCC------ceecHHHHHHHHHHHHHHHhHHHH
Confidence 45556666544 222222 33 455543 244555666666554432 34444445567899998876533
Q ss_pred --------------------HHHHHHHHHHHHHHhCCCCH--HHHHHHHHHhccch--h-hhhHHHHHHHHhcccCCCCC
Q 041006 79 --------------------DMQLISEAYYLLKHVGGVSN--AELAEIFDEWNKGE--L-ESFMVQITADIFKVKDEYGE 133 (333)
Q Consensus 79 --------------------~m~a~AEg~~Ll~~~~Gld~--~~ia~I~~~w~~G~--i-~S~L~~i~~~il~~~d~~~~ 133 (333)
...++.|.+.++++ .|+++ +.+.+.++...... . .|.+.+ ..+.+..
T Consensus 196 ~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a-~G~~~~~~~~~~~~~~~~~~~~~~~sSm~~D----~~~gr~t--- 267 (305)
T PRK12921 196 TALGRATVGGILSRPGGRDLARALLRECLAVARA-EGAPLRDDVVEEIVKIFAGAPGDMKTSMLRD----MEKGRPL--- 267 (305)
T ss_pred HHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHhccCCCCCcHHHHH----HHcCCcc---
Confidence 23457788888875 66543 33333322111100 0 122222 2222221
Q ss_pred chhhHHHHHhhcccCchHHHHHHHHHcCCChhHHHHHHH
Q 041006 134 GELVDKILDKTGMKGTGKWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 134 ~~lvd~~~d~~~~k~~~~~~v~~A~~~GvplP~~~aAl~ 172 (333)
-+|.+ ...++..|.++|+|+|.....+.
T Consensus 268 --Eid~i---------~G~vv~~a~~~gv~~P~~~~l~~ 295 (305)
T PRK12921 268 --EIDHL---------QGVLLRRARAHGIPTPILDTVYA 295 (305)
T ss_pred --cHHHH---------HHHHHHHHHHhCCCCcHHHHHHH
Confidence 11211 22478899999999998776544
No 62
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.47 E-value=4.3 Score=37.52 Aligned_cols=77 Identities=8% Similarity=-0.018 Sum_probs=50.2
Q ss_pred ccEEecccCCCHHHH-hcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHH-----HHHHHH
Q 041006 7 VCLISAWGSPGARKA-RHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNG-----IEYGDM 80 (333)
Q Consensus 7 ~~~ldapVSGg~~gA-~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~-----l~~a~m 80 (333)
..+..+|+. ..+ ..|.+.+++++ +.++++|+.+|. +.++++. |...+. +....+
T Consensus 110 ~~~r~~P~~---~~a~~~g~t~~~~~~----~~~~~l~~~lG~-------~~~~~~e------~~~d~~~a~~s~~a~~~ 169 (258)
T PRK06476 110 KLVRAIPLP---FVAERKGVTAIYPPD----PFVAALFDALGT-------AVECDSE------EEYDLLAAASALMATYF 169 (258)
T ss_pred CEEEECCCC---hhhhCCCCeEecCCH----HHHHHHHHhcCC-------cEEECCh------HhccceeehhccHHHHH
Confidence 457788883 333 33556677664 589999999997 3457743 222222 333333
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 81 QLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 81 ~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
..+.++..++++ .|+|.++..++
T Consensus 170 ~~~~~~~~~~~~-~Gl~~~~a~~~ 192 (258)
T PRK06476 170 GILETATGWLEE-QGLKRQKARAY 192 (258)
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHH
Confidence 456777778885 99999998877
No 63
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.95 E-value=2 Score=40.87 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=43.4
Q ss_pred CCccEEec-ccCCCHH-HHhcC-------C-ee---cccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHH
Q 041006 5 RRVCLISA-WGSPGAR-KARHG-------P-SL---MPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKM 70 (333)
Q Consensus 5 ~G~~~lda-pVSGg~~-gA~~G-------~-si---m~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKl 70 (333)
.+++|+++ |+.|++. |+..| . .+ +.|++.++++.++++|+.+|.+ ++++++.-....+-+
T Consensus 116 ~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~------~~~~~~~~hD~~~A~ 188 (307)
T PRK07502 116 EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGAR------VEEMDPEHHDLVLAI 188 (307)
T ss_pred CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE------EEEcCHHHHhHHHHH
Confidence 46789998 9998653 44333 2 22 3478999999999999999986 788887655544433
No 64
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=83.90 E-value=4.8 Score=41.11 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=58.6
Q ss_pred eecccCC-----HHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 041006 26 SLMPGGS-----FEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAE 100 (333)
Q Consensus 26 sim~GG~-----~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ 100 (333)
-+++||. +++.++++.++..+... ..+.+-+.-.+..+|++.|+.....++.+-|--.++++ .|+|..+
T Consensus 173 riViG~~~~~~~~~a~~~~~~lY~~~~~~-----~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~-~giD~~e 246 (473)
T PLN02353 173 RVLIGGRETPEGQKAVQALKDVYAHWVPE-----ERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA-TGADVSQ 246 (473)
T ss_pred EEEEccCCchhhHHHHHHHHHHHHHhhcC-----CCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHH
Confidence 5677985 34678888888888632 14455666788999999999999999999999999985 9999988
Q ss_pred HHHH
Q 041006 101 LAEI 104 (333)
Q Consensus 101 ia~I 104 (333)
+.+.
T Consensus 247 V~~~ 250 (473)
T PLN02353 247 VSHA 250 (473)
T ss_pred HHHH
Confidence 8777
No 65
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.79 E-value=4.1 Score=38.23 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=59.4
Q ss_pred CCccEEe-cccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHH
Q 041006 5 RRVCLIS-AWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLI 83 (333)
Q Consensus 5 ~G~~~ld-apVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~ 83 (333)
.|++|.. +++.++.+ ...| .+.++++++.++++|+.++.. +.++|+. .| .+.|-|.+..+
T Consensus 137 ig~h~~~P~~~~~~ve-v~~g----~~t~~e~~~~~~~l~~~lGk~------pv~~~d~-~g----~i~~Ri~~~~~--- 197 (282)
T PRK05808 137 IGMHFFNPVPVMKLVE-IIRG----LATSDATHEAVEALAKKIGKT------PVEVKNA-PG----FVVNRILIPMI--- 197 (282)
T ss_pred EEeeccCCcccCccEE-EeCC----CCCCHHHHHHHHHHHHHcCCe------eEEecCc-cC----hHHHHHHHHHH---
Confidence 3566666 67766664 2223 678999999999999999986 7888753 23 26666655544
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhccc
Q 041006 84 SEAYYLLKHVGGVSNAELAEIFDEWNKG 111 (333)
Q Consensus 84 AEg~~Ll~~~~Gld~~~ia~I~~~w~~G 111 (333)
.|++.++++ .-.++++|-.+ |..|
T Consensus 198 ~ea~~~~~~-gv~~~~diD~~---~~~g 221 (282)
T PRK05808 198 NEAIFVLAE-GVATAEDIDEG---MKLG 221 (282)
T ss_pred HHHHHHHHh-CCCCHHHHHHH---HHhC
Confidence 799999986 22578888887 5544
No 66
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=78.92 E-value=28 Score=33.14 Aligned_cols=22 Identities=9% Similarity=-0.130 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHH
Q 041006 151 KWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 151 ~~~v~~A~~~GvplP~~~aAl~ 172 (333)
.+++..|.++|+|+|.....+.
T Consensus 282 G~vv~~a~~~Gi~~P~~~~l~~ 303 (313)
T PRK06249 282 ANPLAAARAAGCAMPRVEMLYQ 303 (313)
T ss_pred hHHHHHHHHhCCCCcHHHHHHH
Confidence 4689999999999998765433
No 67
>PRK07680 late competence protein ComER; Validated
Probab=76.33 E-value=15 Score=34.20 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=50.9
Q ss_pred CHHHHhcCC-eeccc--CCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 041006 17 GARKARHGP-SLMPG--GSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHN--GIEYGDMQLISEAYYLLK 91 (333)
Q Consensus 17 g~~gA~~G~-sim~G--G~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N--~l~~a~m~a~AEg~~Ll~ 91 (333)
.+.++..|. .++.| .+.+.++.++++|+.+|. ++++.+.---.+.-+.+- ++.+..+.++.++- .+
T Consensus 119 ~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-------~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~ 189 (273)
T PRK07680 119 ITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-------PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VE 189 (273)
T ss_pred hHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-------EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HH
Confidence 455677888 55666 577889999999999995 677765311111222222 35566666666653 24
Q ss_pred HhCCCCHHHHHHH
Q 041006 92 HVGGVSNAELAEI 104 (333)
Q Consensus 92 ~~~Gld~~~ia~I 104 (333)
..|++.++..++
T Consensus 190 -~~Gl~~~~a~~~ 201 (273)
T PRK07680 190 -ETNISKEEATTL 201 (273)
T ss_pred -hcCCCHHHHHHH
Confidence 389999998777
No 68
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=74.27 E-value=35 Score=31.57 Aligned_cols=20 Identities=20% Similarity=-0.019 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCChhHHHHH
Q 041006 151 KWTIQQAAELLIAALTIAGS 170 (333)
Q Consensus 151 ~~~v~~A~~~GvplP~~~aA 170 (333)
.+++..|.++|+|+|.....
T Consensus 264 G~~v~~a~~~gv~~P~~~~l 283 (293)
T TIGR00745 264 GAVVRLAEKLGIDAPVNRTL 283 (293)
T ss_pred cHHHHHHHHcCCCCChHHHH
Confidence 35889999999999987653
No 69
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=72.33 E-value=81 Score=31.65 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=87.6
Q ss_pred cCCCHHHHhcC--------C-eecccCCHH-HHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHH
Q 041006 14 GSPGARKARHG--------P-SLMPGGSFE-AYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLI 83 (333)
Q Consensus 14 VSGg~~gA~~G--------~-sim~GG~~~-a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~ 83 (333)
|--.|+--|.| | -|.+|...+ +-+.++.++..+..+ +- .+.+.+. -.+..+|...|++++..+.-+
T Consensus 145 v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~--~~-p~l~t~~-~~AE~IKyaaNafLAtKIsFi 220 (414)
T COG1004 145 VASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ--DV-PILFTDL-REAELIKYAANAFLATKISFI 220 (414)
T ss_pred EecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc--CC-CEEEecc-hHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777 4 578888765 577788887766442 11 2556665 467899999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcCCC
Q 041006 84 SEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELLIA 163 (333)
Q Consensus 84 AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~Gvp 163 (333)
-|.-.++++ .|+|..++++- .-. . .+|....+....-+.+.-+ - ||.+-.+..|.++|++
T Consensus 221 NEia~ice~-~g~D~~~V~~g---IGl---D---~RIG~~fl~aG~GyGGsCf-P---------KD~~AL~~~a~~~~~~ 280 (414)
T COG1004 221 NEIANICEK-VGADVKQVAEG---IGL---D---PRIGNHFLNAGFGYGGSCF-P---------KDTKALIANAEELGYD 280 (414)
T ss_pred HHHHHHHHH-hCCCHHHHHHH---cCC---C---chhhHhhCCCCCCCCCcCC-c---------HhHHHHHHHHHhcCCc
Confidence 999999995 99998887765 211 1 1122122222211112111 1 1344456788999999
Q ss_pred hhHHHHHHH
Q 041006 164 ALTIAGSLD 172 (333)
Q Consensus 164 lP~~~aAl~ 172 (333)
.+++.+.+.
T Consensus 281 ~~ll~avv~ 289 (414)
T COG1004 281 PNLLEAVVE 289 (414)
T ss_pred hHHHHHHHH
Confidence 888877654
No 70
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=71.88 E-value=35 Score=31.83 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCChhHHHHHH
Q 041006 151 KWTIQQAAELLIAALTIAGSL 171 (333)
Q Consensus 151 ~~~v~~A~~~GvplP~~~aAl 171 (333)
.+++..|.++|+|+|.....+
T Consensus 271 G~~v~~a~~~gv~~P~~~~l~ 291 (304)
T PRK06522 271 GYVLRRGRKHGIPTPLNDALY 291 (304)
T ss_pred cHHHHHHHHcCCCCcHHHHHH
Confidence 358899999999999875533
No 71
>PRK06545 prephenate dehydrogenase; Validated
Probab=70.47 E-value=6.1 Score=38.66 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=45.8
Q ss_pred CCccEEe-cccCCCH-HHHh-------cCC-eeccc---CCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHH
Q 041006 5 RRVCLIS-AWGSPGA-RKAR-------HGP-SLMPG---GSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMV 71 (333)
Q Consensus 5 ~G~~~ld-apVSGg~-~gA~-------~G~-sim~G---G~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv 71 (333)
++.+||+ .|+.|++ .|.+ .|. .+++. +++++++.++.+++.++++ ++++.+......+-++
T Consensus 111 ~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~------~v~~~~~~HD~~~A~v 184 (359)
T PRK06545 111 DLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAK------FVVLDAEEHDRAVALV 184 (359)
T ss_pred CCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCE------EEECCHHHHhHHHhHh
Confidence 4678999 6999974 3333 343 44443 5899999999999999986 7789876655555554
Q ss_pred HHHH
Q 041006 72 HNGI 75 (333)
Q Consensus 72 ~N~l 75 (333)
.-+-
T Consensus 185 shlP 188 (359)
T PRK06545 185 SHLP 188 (359)
T ss_pred ccHH
Confidence 4433
No 72
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=62.52 E-value=82 Score=28.92 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=47.4
Q ss_pred CHHHHhcCC-eecccC--CHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041006 17 GARKARHGP-SLMPGG--SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNF-VKMVHNGIEYGDMQLISEAYYLLKH 92 (333)
Q Consensus 17 g~~gA~~G~-sim~GG--~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~-vKlv~N~l~~a~m~a~AEg~~Ll~~ 92 (333)
.+.....|. .+.++. ++++++.++.+|+.+|. ++++.+.-.=+. +=+.-+ .-+.+..+.|++.-...
T Consensus 119 ~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-------~~~~~~e~~~d~~~a~~~~--~pa~~~~~~~~~~~~~~ 189 (267)
T PRK11880 119 TPALVGAGMTALTANALVSAEDRELVENLLSAFGK-------VVWVDDEKQMDAVTAVSGS--GPAYVFLFIEALADAGV 189 (267)
T ss_pred chHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-------EEEECChHhcchHHHHhcC--hHHHHHHHHHHHHHHHH
Confidence 343444455 466665 89999999999999996 677774321111 111111 11233344555554433
Q ss_pred hCCCCHHHHHHHH
Q 041006 93 VGGVSNAELAEIF 105 (333)
Q Consensus 93 ~~Gld~~~ia~I~ 105 (333)
..|++.++..++.
T Consensus 190 ~~Gl~~~~a~~~~ 202 (267)
T PRK11880 190 KLGLPREQARKLA 202 (267)
T ss_pred HcCCCHHHHHHHH
Confidence 5899999987773
No 73
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=57.68 E-value=99 Score=24.84 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=15.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHH
Q 041006 150 GKWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 150 ~~~~v~~A~~~GvplP~~~aAl~ 172 (333)
..+++..|.++|+|+|.....+.
T Consensus 97 ~G~vv~~a~~~gv~~P~~~~i~~ 119 (125)
T PF08546_consen 97 NGYVVRLAKKHGVPTPVNETIYA 119 (125)
T ss_dssp HHHHHHHHHHTT---HHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcHHHHHHH
Confidence 45688999999999998765433
No 74
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=57.36 E-value=86 Score=26.22 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=44.6
Q ss_pred eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 041006 26 SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNF---VKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELA 102 (333)
Q Consensus 26 sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~---vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia 102 (333)
.+.+-||+++.+.++.+++.++.+ ++.+-+.....| .=++.|.+ ...+..+..++++ .|+|.++..
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~------~~~i~~~~r~~yHaAav~asNf~----~~L~~~a~~ll~~-~gi~~~~a~ 71 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGR------PFEIDSEQRALYHAAAVFASNFL----VALYALAAELLEQ-AGIDFEEAL 71 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSE------EEE--GGGHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TT-SHHH--
T ss_pred EEEEecCHHHHHHHHHHHHHhCCc------eEEeCHHhHHHHHHHHHHHHhhH----HHHHHHHHHHHHH-cCCCchhHH
Confidence 344556999999999999999996 778765554422 23344543 3456778889995 999997766
Q ss_pred HH
Q 041006 103 EI 104 (333)
Q Consensus 103 ~I 104 (333)
++
T Consensus 72 ~~ 73 (132)
T PF10728_consen 72 EA 73 (132)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 75
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.08 E-value=61 Score=30.40 Aligned_cols=66 Identities=14% Similarity=0.267 Sum_probs=48.0
Q ss_pred ccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 041006 29 PGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEW 108 (333)
Q Consensus 29 ~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w 108 (333)
.+.+++++++++.+++.++++ ...+.+.-.|. +.|=|... .+.|++.|..+ .-.++++|-.+ |
T Consensus 159 ~~t~~~~~~~~~~~~~~~Gk~------pv~v~~d~pgf----i~nRi~~~---~~~ea~~l~~~-g~a~~~~iD~a---~ 221 (287)
T PRK08293 159 PGTDPEVFDTVVAFAKAIGMV------PIVLKKEQPGY----ILNSLLVP---FLSAALALWAK-GVADPETIDKT---W 221 (287)
T ss_pred CCCCHHHHHHHHHHHHHcCCe------EEEecCCCCCH----hHHHHHHH---HHHHHHHHHHc-CCCCHHHHHHH---H
Confidence 468899999999999999986 67787544444 44444443 45899999985 33689998888 6
Q ss_pred ccc
Q 041006 109 NKG 111 (333)
Q Consensus 109 ~~G 111 (333)
..|
T Consensus 222 ~~~ 224 (287)
T PRK08293 222 MIA 224 (287)
T ss_pred Hhc
Confidence 444
No 76
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=40.01 E-value=33 Score=31.52 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=33.1
Q ss_pred HHhcCC-eecccCCH-HHHHHHHHHHHHHhccCCCCCceEEeCCC
Q 041006 20 KARHGP-SLMPGGSF-EAYNNIQGILQKVAAQVDDGPCVTYIGEG 62 (333)
Q Consensus 20 gA~~G~-sim~GG~~-~a~~~v~pvL~~i~~~~~~~p~v~~~G~~ 62 (333)
-++.|+ .||+||+. -..+.+.++++.+-.. . -||+...|..
T Consensus 23 ~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~-~-lPvilfp~~~ 65 (223)
T TIGR01768 23 AAESGTDAILIGGSQGVTYEKTDTLIEALRRY-G-LPIILFPSNP 65 (223)
T ss_pred HHhcCCCEEEEcCCCcccHHHHHHHHHHHhcc-C-CCEEEeCCCc
Confidence 466888 99999999 6678899999988863 3 8999887753
No 77
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=38.40 E-value=47 Score=30.48 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=29.9
Q ss_pred cCC-eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCC
Q 041006 23 HGP-SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGG 63 (333)
Q Consensus 23 ~G~-sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~G 63 (333)
.|+ .||+||+..+-+...++++.+.+..+.-||+...|...
T Consensus 24 ~gtdai~vGGS~~v~~~~~~~~~~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 24 SGTDAIMVGGSDGVSSTLDNVVRLIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred cCCCEEEECCccchhhhHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 888 99999999443677777777665433478998888644
No 78
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=37.32 E-value=42 Score=31.14 Aligned_cols=42 Identities=24% Similarity=0.478 Sum_probs=33.0
Q ss_pred HHHhcCC-eecccCCHHHH-HHHHHHHHHHhccCCCCCceEEeCC
Q 041006 19 RKARHGP-SLMPGGSFEAY-NNIQGILQKVAAQVDDGPCVTYIGE 61 (333)
Q Consensus 19 ~gA~~G~-sim~GG~~~a~-~~v~pvL~~i~~~~~~~p~v~~~G~ 61 (333)
.-++.|+ .||+||+..+- +.+..+.+++..+ -+-||+...|.
T Consensus 36 ~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~-~~lPvilfP~~ 79 (240)
T COG1646 36 AAAEAGTDAIMIGGSDGVTEENVDNVVEAIKER-TDLPVILFPGS 79 (240)
T ss_pred HHHHcCCCEEEECCcccccHHHHHHHHHHHHhh-cCCCEEEecCC
Confidence 3466889 99999999655 7788888888853 46788888775
No 79
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=37.20 E-value=3.8e+02 Score=25.62 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=63.4
Q ss_pred ecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHH---------------------HHHHHHHH
Q 041006 27 LMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEY---------------------GDMQLISE 85 (333)
Q Consensus 27 im~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~---------------------a~m~a~AE 85 (333)
.+.|++.+.++.+..+|+.-+-. +.+.-+.-.....|++-|+-.- ..-..+.|
T Consensus 148 ~~~~~~~~~~~~i~~~~~~a~~~------~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E 221 (307)
T COG1893 148 ELRGGRDELVKALAELFKEAGLE------VELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAE 221 (307)
T ss_pred cCCCCchHHHHHHHHHHHhCCCC------eEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHH
Confidence 46777777888887777655543 4444444555666776665444 23344566
Q ss_pred HHHHHHHhCC--CCHHHHHHHHHHhccc--hhh-hhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHc
Q 041006 86 AYYLLKHVGG--VSNAELAEIFDEWNKG--ELE-SFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAEL 160 (333)
Q Consensus 86 g~~Ll~~~~G--ld~~~ia~I~~~w~~G--~i~-S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~ 160 (333)
....+++ .| ++.+.+.+++..-+.. ... |.+.|.. +.+.. =+|.+ -.-++..|...
T Consensus 222 ~~~v~~~-~g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~----~gr~t-----Eid~i---------~G~vv~~a~~~ 282 (307)
T COG1893 222 VVAVARA-EGVELPEEVVERVLAVIRATDAENYSSMLQDLE----KGRPT-----EIDAI---------NGAVVRLAKKH 282 (307)
T ss_pred HHHHHHh-ccCCCCHHHHHHHHHHHHhcccccCchHHHHHH----cCCcc-----cHHHH---------hhHHHHHHHHh
Confidence 6666664 34 4443333332222222 111 3333322 11110 01111 12378899999
Q ss_pred CCChhHHHHHHH
Q 041006 161 LIAALTIAGSLD 172 (333)
Q Consensus 161 GvplP~~~aAl~ 172 (333)
|+++|+...-..
T Consensus 283 gi~~P~~~~L~~ 294 (307)
T COG1893 283 GLATPVNDTLYA 294 (307)
T ss_pred CCCCcHHHHHHH
Confidence 999998765433
No 80
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=36.82 E-value=1.1e+02 Score=25.90 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhh-hhHHHHH
Q 041006 79 DMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELE-SFMVQIT 121 (333)
Q Consensus 79 ~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~-S~L~~i~ 121 (333)
..|.+.|.+..+++++|.+...+.++.+.|+.+|-+ ++-.++.
T Consensus 43 s~QVl~Et~~vl~RK~~~s~~~i~~lie~~~~~~~Iv~~t~~~~ 86 (142)
T COG5573 43 SVQVLNETCYVLKRKYGASEQLIQTLIEAFRRQCRIVHLTHEEV 86 (142)
T ss_pred ehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhceeecCCHHHH
Confidence 378999999999989999999999999999999855 5544443
No 81
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=34.32 E-value=1.5e+02 Score=22.57 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHHHHH
Q 041006 65 SNFVKMVHNGIEYGDMQLISEAYYLLKH--VGGVSNAELAEI 104 (333)
Q Consensus 65 G~~vKlv~N~l~~a~m~a~AEg~~Ll~~--~~Gld~~~ia~I 104 (333)
.+|.+++.+.+.-..=++++++-.+.++ .-+++|++|.++
T Consensus 2 ~~Y~~lL~~yl~~~~E~~L~~~~~~~r~~i~~~I~PEeIv~i 43 (77)
T PF08673_consen 2 EQYKDLLREYLETQDEQSLYQAQEFGRELIEKDISPEEIVEI 43 (77)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3688999999999999999999999987 468999999887
No 82
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.43 E-value=2.1e+02 Score=27.74 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcc
Q 041006 31 GSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNK 110 (333)
Q Consensus 31 G~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~ 110 (333)
-++++++++..+++.++++ .+.+...--|. +-|=|.++. +.|++.|..+ ...++++|-.+ ++.
T Consensus 160 T~~e~~~~~~~f~~~lGk~------pV~v~kd~pGF----i~NRl~~a~---~~EA~~lv~e-Gvas~edID~a---~~~ 222 (321)
T PRK07066 160 TAPEAVDAAMGIYRALGMR------PLHVRKEVPGF----IADRLLEAL---WREALHLVNE-GVATTGEIDDA---IRF 222 (321)
T ss_pred CCHHHHHHHHHHHHHcCCE------eEecCCCCccH----HHHHHHHHH---HHHHHHHHHh-CCCCHHHHHHH---HHh
Confidence 4689999999999999986 56775433343 666666654 4899999996 44789999998 665
Q ss_pred ch
Q 041006 111 GE 112 (333)
Q Consensus 111 G~ 112 (333)
|+
T Consensus 223 g~ 224 (321)
T PRK07066 223 GA 224 (321)
T ss_pred CC
Confidence 54
No 83
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.82 E-value=4.5e+02 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.021 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCChhHHHHH
Q 041006 151 KWTIQQAAELLIAALTIAGS 170 (333)
Q Consensus 151 ~~~v~~A~~~GvplP~~~aA 170 (333)
..+++.|.++|+++|+....
T Consensus 288 ~~v~~~a~~~~i~~P~~~~l 307 (326)
T PRK14620 288 KPLISLAKKLNIELPICESI 307 (326)
T ss_pred HHHHHHHHHhCCCCCHHHHH
Confidence 56889999999999987654
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=30.93 E-value=1.2e+02 Score=27.14 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=30.1
Q ss_pred eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChh--hHHHHHHHH
Q 041006 26 SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSS--NFVKMVHNG 74 (333)
Q Consensus 26 sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG--~~vKlv~N~ 74 (333)
.+.+|++.+++..++.+.... ...+.++..|+.|.| |.++.+++.
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~----~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGP----VADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred ccccCCcHHHHHHHHHHHhcc----CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455788888888877766521 223468888997776 567777664
No 85
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=29.25 E-value=76 Score=29.33 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=32.8
Q ss_pred HHHHhcCC-eecccCCH-HHHHHHHHHHHHHhccCCCCCceEEeCC
Q 041006 18 ARKARHGP-SLMPGGSF-EAYNNIQGILQKVAAQVDDGPCVTYIGE 61 (333)
Q Consensus 18 ~~gA~~G~-sim~GG~~-~a~~~v~pvL~~i~~~~~~~p~v~~~G~ 61 (333)
...++.|+ .||+||+. -.-+.+.++++.+-+ -.-||+...|.
T Consensus 26 ~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~--~~lPvilfp~~ 69 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVTEENVDELVKAIKE--YDLPVILFPGN 69 (232)
T ss_pred HHHHhcCCCEEEEcCCCccchHHHHHHHHHHhc--CCCCEEEeCCC
Confidence 45678899 99999999 445678888888876 35799988775
No 86
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=28.30 E-value=3.2e+02 Score=25.86 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHH
Q 041006 151 KWTIQQAAELLIAALTIAGSLD 172 (333)
Q Consensus 151 ~~~v~~A~~~GvplP~~~aAl~ 172 (333)
..++..|.++|+|+|.....+.
T Consensus 270 G~vvr~a~~~Gv~~P~~~~l~~ 291 (305)
T PRK05708 270 GYACRAADRHGLPLPRLQHLQQ 291 (305)
T ss_pred hHHHHHHHHcCCCCchHHHHHH
Confidence 4588999999999998766443
No 87
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=27.69 E-value=1.1e+02 Score=24.86 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=24.4
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCC
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGG 63 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~G 63 (333)
++.|..|+..||.++.. +++.++++..+|+.+.+ |-..||..+-
T Consensus 54 ~~~Gl~y~~iPv~~~~~------------~~~~v~~f~~~l~~~~~-----Pvl~hC~sG~ 97 (110)
T PF04273_consen 54 EALGLQYVHIPVDGGAI------------TEEDVEAFADALESLPK-----PVLAHCRSGT 97 (110)
T ss_dssp HHCT-EEEE----TTT--------------HHHHHHHHHHHHTTTT-----SEEEE-SCSH
T ss_pred HHcCCeEEEeecCCCCC------------CHHHHHHHHHHHHhCCC-----CEEEECCCCh
Confidence 46799999999987543 24566666666666443 6788998643
No 88
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.91 E-value=43 Score=29.87 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=25.6
Q ss_pred ccCCccEEe-ccc-CCCHHHHhcCCeecccCCH-HHHHHHHHHHHHHh
Q 041006 3 PVRRVCLIS-AWG-SPGARKARHGPSLMPGGSF-EAYNNIQGILQKVA 47 (333)
Q Consensus 3 ~~~G~~~ld-apV-SGg~~gA~~G~sim~GG~~-~a~~~v~pvL~~i~ 47 (333)
+++|+.|++ .-+ || |...+-..|+|+.+ +++++++++++.+.
T Consensus 129 ~~~Gi~~~Pd~~~NaG---Gv~~~~~e~~~~~~~~~~~~~~~~~~~~~ 173 (200)
T cd01075 129 HERGILYAPDYVVNAG---GLINVADELYGGNEARVLAKVEAIYDTLL 173 (200)
T ss_pred HHCCCEEeCceeeeCc---CceeehhHHhCCcHHHHHHHHHHHHHHHH
Confidence 567888887 555 45 44444566777764 56666666554443
No 89
>PLN02913 dihydrofolate synthetase
Probab=26.76 E-value=96 Score=31.99 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHH
Q 041006 35 AYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEY 77 (333)
Q Consensus 35 a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~ 77 (333)
.+++++.+|+.++...+.-|+|.-.|..|.|..+.++...+..
T Consensus 57 gL~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~ 99 (510)
T PLN02913 57 DLGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRA 99 (510)
T ss_pred CHHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHh
Confidence 4899999999999543445666667889999999998888754
No 90
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=24.91 E-value=1.2e+02 Score=30.24 Aligned_cols=46 Identities=7% Similarity=0.026 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHH
Q 041006 31 GSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIE 76 (333)
Q Consensus 31 G~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~ 76 (333)
|.+-.+++++.+|+.+|......|+|.-.|..|.|....|+.+.+.
T Consensus 27 ~~~~~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~ 72 (416)
T PRK10846 27 TIDLGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILM 72 (416)
T ss_pred CCCCChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHH
Confidence 4455689999999999954334456666788999999999988874
No 91
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=24.23 E-value=86 Score=29.00 Aligned_cols=38 Identities=24% Similarity=0.530 Sum_probs=23.8
Q ss_pred HhcCC-eecccCCH--HHHHHHHHHHHHHhccCCCCCceEEeCCC
Q 041006 21 ARHGP-SLMPGGSF--EAYNNIQGILQKVAAQVDDGPCVTYIGEG 62 (333)
Q Consensus 21 A~~G~-sim~GG~~--~a~~~v~pvL~~i~~~~~~~p~v~~~G~~ 62 (333)
.+.|+ .||+||+. ..++.+-..++.. -+-||+...|..
T Consensus 29 ~~~gtDai~VGGS~~~~~~d~vv~~ik~~----~~lPvilfPg~~ 69 (230)
T PF01884_consen 29 CESGTDAIIVGGSDTGVTLDNVVALIKRV----TDLPVILFPGSP 69 (230)
T ss_dssp HCTT-SEEEEE-STHCHHHHHHHHHHHHH----SSS-EEEETSTC
T ss_pred HhcCCCEEEECCCCCccchHHHHHHHHhc----CCCCEEEeCCCh
Confidence 46888 99999998 3445555555555 346899997753
No 92
>PLN02712 arogenate dehydrogenase
Probab=23.93 E-value=3.3e+02 Score=29.19 Aligned_cols=53 Identities=6% Similarity=0.038 Sum_probs=37.1
Q ss_pred CCccEE-ecccCCCHHHHhcC---Ce-----ecccCCHHHHHHHH---HHHHHHhccCCCCCceEEeCCCCh
Q 041006 5 RRVCLI-SAWGSPGARKARHG---PS-----LMPGGSFEAYNNIQ---GILQKVAAQVDDGPCVTYIGEGGS 64 (333)
Q Consensus 5 ~G~~~l-dapVSGg~~gA~~G---~s-----im~GG~~~a~~~v~---pvL~~i~~~~~~~p~v~~~G~~Ga 64 (333)
.|+.|+ +.|+.|.+.+ +.| .. ++++++.+.+++++ .+++.+|++ ++.+-+...
T Consensus 476 ~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~------vv~ms~eeH 540 (667)
T PLN02712 476 QDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCR------MVEMSCAEH 540 (667)
T ss_pred CCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCE------EEEeCHHHH
Confidence 467899 9999998865 344 12 55678888877776 666677765 777776443
No 93
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=22.73 E-value=4.8e+02 Score=23.27 Aligned_cols=66 Identities=17% Similarity=0.046 Sum_probs=41.2
Q ss_pred cccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 28 MPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGG--SSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 28 m~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~G--aG~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
-..++++..+.++.+|+.+|. +.++-+.- ..+.+=-+.-++.+..+.++.++ +. ..|++.++-.++
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~-------~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~-~~Gl~~~~a~~~ 205 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGT-------SQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TK-SYGVDEETAKHL 205 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCC-------EEEECHHHcchHHhhhcchHHHHHHHHHHHHHH---HH-HcCCCHHHHHHH
Confidence 345788999999999999997 44664321 11111112233444555555555 34 489999997777
No 94
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=22.54 E-value=1.9e+02 Score=28.54 Aligned_cols=47 Identities=15% Similarity=0.331 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHhccCC-CCCceEEeCCCChh--hHHHHHHHHHHH
Q 041006 31 GSFEAYNNIQGILQKVAAQVD-DGPCVTYIGEGGSS--NFVKMVHNGIEY 77 (333)
Q Consensus 31 G~~~a~~~v~pvL~~i~~~~~-~~p~v~~~G~~GaG--~~vKlv~N~l~~ 77 (333)
|-.++.+++-..|...|...+ .+.-.+.+||+|+| .++.++.++++-
T Consensus 65 G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 65 GMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred CcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 467788888889998887643 33445677997666 567777777653
No 95
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=21.89 E-value=5.5e+02 Score=26.00 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=53.9
Q ss_pred cccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 041006 28 MPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEI 104 (333)
Q Consensus 28 m~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I 104 (333)
.-|=+++.-+.+.-+-+.+-.+ +..+-..-.+..+|+..|..--..++..-|---+..+ .|+|.-++.+.
T Consensus 180 IgG~tp~~~e~a~~lY~~iv~~------~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~-~GIdvwevIea 249 (436)
T COG0677 180 IGGVTPKCAELAAALYKTIVEG------VIPVTSARTAEMVKLTENTFRDVNIALANELALICNA-MGIDVWEVIEA 249 (436)
T ss_pred eecCCHHHHHHHHHHHHHheEE------EEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-hCCcHHHHHHH
Confidence 3344566667777777888775 6677777788999999999999999999997777774 99996555444
No 96
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=21.29 E-value=52 Score=22.30 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=13.8
Q ss_pred HHHhhhhcCcccccc-------CCCCcccc
Q 041006 294 QAQRDLFGAHTYERI-------DRPGSFHT 316 (333)
Q Consensus 294 qaqRd~FGaH~~~r~-------d~~~~~h~ 316 (333)
+.++.|||.| |+|+ |..+.||+
T Consensus 14 ~~~~~yyg~n-~~rL~~iK~~yDP~n~F~~ 42 (47)
T PF08031_consen 14 DWQEAYYGEN-YDRLRAIKRKYDPDNVFRF 42 (47)
T ss_dssp HHHHHHHGGG-HHHHHHHHHHH-TT-TS-S
T ss_pred HHHHHHhchh-HHHHHHHHHHhCccceeCC
Confidence 6788899966 8763 65667764
No 97
>PRK08084 DNA replication initiation factor; Provisional
Probab=20.62 E-value=1.8e+02 Score=26.37 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=29.2
Q ss_pred eecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChh--hHHHHHHH
Q 041006 26 SLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSS--NFVKMVHN 73 (333)
Q Consensus 26 sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG--~~vKlv~N 73 (333)
.+++|++..++..++-+.. . .+.|.++..||.|+| |.+..+-|
T Consensus 23 ~f~~~~n~~a~~~l~~~~~----~-~~~~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALR----Q-EHSGYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred ccccCccHHHHHHHHHHHh----C-CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 6888999988887776543 1 223568888998776 55554443
No 98
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=20.32 E-value=1.9e+02 Score=24.98 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCceEEeCCCChh--hHHHHHHH
Q 041006 32 SFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSS--NFVKMVHN 73 (333)
Q Consensus 32 ~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG--~~vKlv~N 73 (333)
...+..++...++.++... ..|.-.|+.|.| .+++.+|+
T Consensus 4 ~s~~m~~~~~~~~~~a~~~---~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 4 ESPAMKRLREQAKRAASSD---LPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp -SHHHHHHHHHHHHHTTST---S-EEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC---CCEEEEcCCCCcHHHHHHHHHH
Confidence 3445566667777777541 347788987666 67888887
Done!