Query 041007
Match_columns 597
No_of_seqs 364 out of 2818
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5E-68 1.1E-72 588.2 38.0 526 6-597 4-551 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 5.7E-45 1.2E-49 365.9 12.2 277 171-493 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 2.8E-39 6E-44 377.8 25.0 369 163-596 181-563 (1153)
4 PRK04841 transcriptional regul 99.7 3.8E-15 8.2E-20 173.5 25.9 299 165-544 13-332 (903)
5 COG2909 MalT ATP-dependent tra 99.6 5.2E-13 1.1E-17 142.6 25.3 303 165-545 18-339 (894)
6 PRK00411 cdc6 cell division co 99.5 6.4E-12 1.4E-16 132.0 27.4 333 163-540 27-381 (394)
7 TIGR02928 orc1/cdc6 family rep 99.4 7.7E-11 1.7E-15 122.5 25.8 311 164-519 13-351 (365)
8 TIGR03015 pepcterm_ATPase puta 99.3 2.6E-10 5.6E-15 113.2 20.4 190 197-410 43-242 (269)
9 PF01637 Arch_ATPase: Archaeal 99.3 1.2E-11 2.6E-16 119.9 10.2 218 168-406 1-234 (234)
10 TIGR00635 ruvB Holliday juncti 99.3 1.2E-10 2.6E-15 117.8 17.4 264 166-519 4-290 (305)
11 PRK00080 ruvB Holliday junctio 99.3 2.2E-10 4.8E-15 116.7 19.2 265 165-519 24-311 (328)
12 COG3899 Predicted ATPase [Gene 99.3 1.1E-10 2.4E-15 131.8 17.5 333 167-541 1-383 (849)
13 PF05729 NACHT: NACHT domain 99.1 1.5E-09 3.1E-14 99.2 11.7 150 198-373 1-163 (166)
14 PTZ00112 origin recognition co 99.0 4.5E-08 9.6E-13 106.2 23.2 308 165-517 754-1085(1164)
15 COG2256 MGS1 ATPase related to 99.0 6.4E-09 1.4E-13 103.0 13.4 177 163-401 27-207 (436)
16 PF13191 AAA_16: AAA ATPase do 98.9 6E-09 1.3E-13 97.1 8.6 47 167-220 1-47 (185)
17 PRK07003 DNA polymerase III su 98.8 1.2E-07 2.6E-12 102.5 17.9 197 166-408 16-223 (830)
18 PRK13342 recombination factor 98.8 8.8E-08 1.9E-12 100.7 15.9 179 166-407 12-197 (413)
19 PRK06893 DNA replication initi 98.8 3.7E-08 8E-13 94.8 12.0 162 197-410 39-207 (229)
20 PF13401 AAA_22: AAA domain; P 98.8 1.3E-08 2.8E-13 89.0 7.9 117 196-333 3-126 (131)
21 PF13173 AAA_14: AAA domain 98.8 2E-08 4.3E-13 87.4 8.2 125 197-365 2-127 (128)
22 PRK12323 DNA polymerase III su 98.8 8.5E-07 1.8E-11 94.8 21.1 196 166-404 16-223 (700)
23 COG3903 Predicted ATPase [Gene 98.8 1.7E-08 3.7E-13 100.7 7.7 299 196-544 13-314 (414)
24 COG1474 CDC6 Cdc6-related prot 98.8 3E-07 6.5E-12 94.0 17.0 212 165-406 16-238 (366)
25 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.5E-07 5.5E-12 89.2 14.9 178 171-410 22-205 (226)
26 PRK12402 replication factor C 98.7 7E-07 1.5E-11 91.8 18.4 204 166-404 15-224 (337)
27 PRK04195 replication factor C 98.7 1.2E-06 2.7E-11 94.0 20.4 184 166-405 14-201 (482)
28 PRK14963 DNA polymerase III su 98.7 1.5E-07 3.3E-12 100.3 12.6 198 166-403 14-214 (504)
29 PRK14949 DNA polymerase III su 98.6 9.5E-07 2.1E-11 97.6 17.8 194 166-406 16-221 (944)
30 cd00009 AAA The AAA+ (ATPases 98.6 3.6E-07 7.8E-12 81.2 12.3 124 169-333 1-130 (151)
31 PLN03025 replication factor C 98.6 9.2E-07 2E-11 89.8 16.5 182 166-403 13-197 (319)
32 PRK14961 DNA polymerase III su 98.6 1E-06 2.2E-11 91.0 16.9 192 166-403 16-217 (363)
33 PF05496 RuvB_N: Holliday junc 98.6 7E-07 1.5E-11 82.9 14.0 182 165-410 23-225 (233)
34 PRK05564 DNA polymerase III su 98.6 1.6E-06 3.6E-11 87.7 17.4 182 166-406 4-190 (313)
35 PRK14960 DNA polymerase III su 98.6 1E-06 2.2E-11 94.5 16.3 193 166-403 15-216 (702)
36 PRK00440 rfc replication facto 98.6 2.1E-06 4.6E-11 87.4 18.2 183 166-403 17-200 (319)
37 PTZ00202 tuzin; Provisional 98.6 2E-06 4.3E-11 87.2 17.2 170 162-373 258-434 (550)
38 PRK08727 hypothetical protein; 98.6 9.8E-07 2.1E-11 85.1 14.6 159 197-403 41-201 (233)
39 PRK09112 DNA polymerase III su 98.6 2.6E-06 5.6E-11 86.8 18.3 198 163-407 20-241 (351)
40 PRK08691 DNA polymerase III su 98.6 1.8E-06 3.9E-11 93.4 17.6 196 166-406 16-221 (709)
41 PRK14957 DNA polymerase III su 98.6 2.1E-06 4.5E-11 91.9 17.7 185 166-407 16-222 (546)
42 PRK07994 DNA polymerase III su 98.6 2.4E-06 5.2E-11 92.8 18.0 195 166-406 16-221 (647)
43 PRK08084 DNA replication initi 98.6 1.4E-06 3E-11 84.2 14.5 162 197-410 45-213 (235)
44 PRK07471 DNA polymerase III su 98.6 5.5E-06 1.2E-10 84.9 19.4 199 164-407 17-239 (365)
45 PRK05642 DNA replication initi 98.6 1.7E-06 3.6E-11 83.5 14.8 162 197-410 45-212 (234)
46 PRK14956 DNA polymerase III su 98.5 5.2E-07 1.1E-11 93.9 11.3 199 166-406 18-223 (484)
47 KOG2028 ATPase related to the 98.5 2.5E-06 5.4E-11 83.3 15.0 163 195-401 160-331 (554)
48 PF14516 AAA_35: AAA-like doma 98.5 5E-05 1.1E-09 77.3 25.2 217 164-413 9-246 (331)
49 PRK07940 DNA polymerase III su 98.5 4.5E-06 9.8E-11 86.3 17.1 198 166-406 5-213 (394)
50 PRK06645 DNA polymerase III su 98.5 4.2E-06 9.2E-11 89.0 17.3 195 166-403 21-226 (507)
51 TIGR02903 spore_lon_C ATP-depe 98.5 6.6E-06 1.4E-10 90.4 19.0 218 166-409 154-398 (615)
52 PRK14962 DNA polymerase III su 98.5 4E-06 8.6E-11 88.8 16.6 213 166-424 14-240 (472)
53 PF00308 Bac_DnaA: Bacterial d 98.5 2.6E-06 5.6E-11 81.2 13.9 174 196-408 33-210 (219)
54 PRK08903 DnaA regulatory inact 98.5 4.1E-06 8.9E-11 80.8 15.4 157 196-410 41-203 (227)
55 PRK13341 recombination factor 98.5 3.8E-06 8.3E-11 93.1 16.9 177 166-401 28-212 (725)
56 TIGR00678 holB DNA polymerase 98.4 7.2E-06 1.6E-10 76.5 15.7 91 291-401 95-186 (188)
57 PRK14951 DNA polymerase III su 98.4 5.4E-06 1.2E-10 89.9 16.8 196 166-404 16-223 (618)
58 cd01128 rho_factor Transcripti 98.4 7.4E-07 1.6E-11 86.1 8.4 90 196-302 15-113 (249)
59 PRK14969 DNA polymerase III su 98.4 7.9E-06 1.7E-10 88.1 17.1 184 166-406 16-221 (527)
60 PRK14964 DNA polymerase III su 98.4 9.6E-06 2.1E-10 85.6 17.2 182 166-406 13-218 (491)
61 PRK05896 DNA polymerase III su 98.4 7.5E-06 1.6E-10 87.8 16.0 197 166-408 16-223 (605)
62 KOG2227 Pre-initiation complex 98.4 8E-06 1.7E-10 82.7 14.6 221 164-409 148-375 (529)
63 PRK14955 DNA polymerase III su 98.4 9.4E-06 2E-10 84.9 16.0 197 166-406 16-229 (397)
64 PF05673 DUF815: Protein of un 98.4 9.5E-06 2.1E-10 76.5 14.0 111 162-319 23-133 (249)
65 TIGR02397 dnaX_nterm DNA polym 98.4 1.5E-05 3.3E-10 82.4 17.3 184 166-406 14-218 (355)
66 PRK14958 DNA polymerase III su 98.4 1E-05 2.2E-10 86.6 16.2 195 166-406 16-221 (509)
67 PRK14087 dnaA chromosomal repl 98.3 1.2E-05 2.6E-10 84.9 15.8 177 197-408 141-321 (450)
68 PRK09111 DNA polymerase III su 98.3 2.1E-05 4.4E-10 85.6 17.2 197 166-405 24-232 (598)
69 PRK14959 DNA polymerase III su 98.3 2.1E-05 4.7E-10 84.8 16.8 199 166-410 16-225 (624)
70 PRK07764 DNA polymerase III su 98.3 2.3E-05 4.9E-10 88.2 17.6 192 166-403 15-218 (824)
71 PRK14970 DNA polymerase III su 98.3 4E-05 8.6E-10 79.6 18.3 186 166-406 17-210 (367)
72 TIGR01242 26Sp45 26S proteasom 98.3 8.6E-06 1.9E-10 84.3 13.1 191 163-400 119-328 (364)
73 PRK09087 hypothetical protein; 98.3 8.7E-06 1.9E-10 77.9 12.1 153 197-408 44-197 (226)
74 PRK14950 DNA polymerase III su 98.3 2.5E-05 5.4E-10 85.7 17.0 196 166-406 16-221 (585)
75 TIGR03345 VI_ClpV1 type VI sec 98.3 1.4E-05 3E-10 90.9 15.1 45 166-220 187-231 (852)
76 PRK14952 DNA polymerase III su 98.2 4.1E-05 8.9E-10 82.9 17.7 197 166-408 13-222 (584)
77 PRK09376 rho transcription ter 98.2 3E-06 6.6E-11 85.4 8.1 90 196-302 168-266 (416)
78 PF05621 TniB: Bacterial TniB 98.2 3.1E-05 6.6E-10 75.6 14.5 204 173-406 44-261 (302)
79 PRK08451 DNA polymerase III su 98.2 9.6E-05 2.1E-09 78.9 18.3 192 166-404 14-216 (535)
80 KOG0989 Replication factor C, 98.2 2.3E-05 5E-10 75.3 12.1 190 166-406 36-231 (346)
81 PRK14954 DNA polymerase III su 98.2 7.1E-05 1.5E-09 81.6 17.4 202 166-406 16-229 (620)
82 PRK06305 DNA polymerase III su 98.2 9.2E-05 2E-09 78.4 17.7 195 166-407 17-224 (451)
83 PRK14086 dnaA chromosomal repl 98.1 4.6E-05 9.9E-10 81.9 15.1 168 198-404 315-486 (617)
84 PRK07133 DNA polymerase III su 98.1 1.6E-05 3.5E-10 87.0 11.9 200 166-407 18-221 (725)
85 PRK14953 DNA polymerase III su 98.1 9.3E-05 2E-09 78.9 17.3 192 166-404 16-218 (486)
86 KOG2543 Origin recognition com 98.1 0.00013 2.8E-09 72.4 16.5 211 165-409 5-229 (438)
87 PRK03992 proteasome-activating 98.1 1.7E-05 3.8E-10 82.5 10.8 57 164-220 129-188 (389)
88 TIGR02881 spore_V_K stage V sp 98.1 4.3E-05 9.4E-10 75.2 12.8 53 167-219 7-64 (261)
89 TIGR00362 DnaA chromosomal rep 98.1 8.2E-05 1.8E-09 78.3 15.5 169 197-404 136-308 (405)
90 TIGR02639 ClpA ATP-dependent C 98.1 5.2E-05 1.1E-09 85.6 14.8 45 166-220 182-226 (731)
91 TIGR00767 rho transcription te 98.1 1.3E-05 2.8E-10 81.4 8.7 90 196-302 167-265 (415)
92 PRK11331 5-methylcytosine-spec 98.1 1.6E-05 3.6E-10 82.0 9.6 64 166-241 175-238 (459)
93 PRK14971 DNA polymerase III su 98.1 0.00016 3.5E-09 79.3 17.9 183 166-406 17-223 (614)
94 CHL00181 cbbX CbbX; Provisiona 98.1 7.4E-05 1.6E-09 74.2 13.8 143 197-375 59-211 (287)
95 PRK05563 DNA polymerase III su 98.1 0.00024 5.1E-09 77.4 18.8 192 166-403 16-217 (559)
96 PRK06620 hypothetical protein; 98.0 6E-05 1.3E-09 71.5 12.5 102 294-406 87-189 (214)
97 PRK14088 dnaA chromosomal repl 98.0 6.9E-05 1.5E-09 79.2 14.2 170 197-404 130-303 (440)
98 COG2255 RuvB Holliday junction 98.0 0.00037 8E-09 66.6 17.3 177 166-406 26-223 (332)
99 PHA02544 44 clamp loader, smal 98.0 3.5E-05 7.7E-10 78.3 11.5 150 166-371 21-171 (316)
100 PRK14948 DNA polymerase III su 98.0 0.0002 4.4E-09 78.5 17.7 196 166-405 16-221 (620)
101 PRK00149 dnaA chromosomal repl 98.0 6.8E-05 1.5E-09 79.9 13.8 169 197-404 148-320 (450)
102 PRK06647 DNA polymerase III su 98.0 0.00023 5.1E-09 77.1 17.3 192 166-403 16-217 (563)
103 PRK14965 DNA polymerase III su 98.0 0.00019 4.2E-09 78.4 16.6 197 166-408 16-223 (576)
104 PRK05707 DNA polymerase III su 98.0 0.00023 4.9E-09 72.1 15.7 98 291-406 105-203 (328)
105 PRK07399 DNA polymerase III su 98.0 0.00037 8.1E-09 70.1 17.1 197 166-406 4-221 (314)
106 COG3267 ExeA Type II secretory 98.0 0.00052 1.1E-08 64.7 16.7 187 196-408 50-247 (269)
107 PF00004 AAA: ATPase family as 98.0 4E-05 8.7E-10 66.7 8.8 21 200-220 1-21 (132)
108 PRK12422 chromosomal replicati 97.9 0.00017 3.7E-09 76.1 14.6 164 197-399 141-306 (445)
109 COG0593 DnaA ATPase involved i 97.9 0.00047 1E-08 70.7 17.0 148 196-377 112-261 (408)
110 PRK10536 hypothetical protein; 97.9 0.00043 9.3E-09 66.4 15.3 54 164-229 53-106 (262)
111 CHL00095 clpC Clp protease ATP 97.9 0.00012 2.7E-09 83.6 14.0 45 166-220 179-223 (821)
112 smart00382 AAA ATPases associa 97.9 9.2E-05 2E-09 64.9 10.2 38 198-237 3-40 (148)
113 TIGR02880 cbbX_cfxQ probable R 97.9 0.00016 3.5E-09 71.9 12.7 141 198-374 59-209 (284)
114 PRK10865 protein disaggregatio 97.8 0.00015 3.2E-09 83.0 13.1 45 166-220 178-222 (857)
115 TIGR00602 rad24 checkpoint pro 97.8 0.00026 5.7E-09 77.2 14.3 51 165-220 83-133 (637)
116 COG2607 Predicted ATPase (AAA+ 97.8 0.0024 5.2E-08 59.6 17.9 125 162-333 56-183 (287)
117 TIGR03689 pup_AAA proteasome A 97.8 0.00016 3.4E-09 76.9 11.8 55 166-220 182-239 (512)
118 PRK08116 hypothetical protein; 97.8 0.00011 2.5E-09 72.2 10.0 104 198-333 115-221 (268)
119 PRK11034 clpA ATP-dependent Cl 97.8 0.00014 3E-09 81.4 11.8 45 166-220 186-230 (758)
120 COG1373 Predicted ATPase (AAA+ 97.8 0.00049 1.1E-08 71.8 14.8 124 199-368 39-162 (398)
121 COG0542 clpA ATP-binding subun 97.8 9.2E-05 2E-09 81.2 9.4 141 166-332 491-643 (786)
122 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00051 1.1E-08 78.9 15.1 45 166-220 173-217 (852)
123 PTZ00454 26S protease regulato 97.7 0.00077 1.7E-08 70.0 14.9 55 166-220 145-202 (398)
124 PTZ00361 26 proteosome regulat 97.7 0.00027 5.9E-09 73.9 11.1 55 166-220 183-240 (438)
125 PRK08181 transposase; Validate 97.7 0.0003 6.5E-09 68.9 10.7 102 198-333 107-209 (269)
126 PRK08769 DNA polymerase III su 97.6 0.0022 4.8E-08 64.4 16.1 97 291-407 112-209 (319)
127 KOG0991 Replication factor C, 97.6 0.003 6.6E-08 58.5 15.4 44 166-219 27-70 (333)
128 KOG1514 Origin recognition com 97.6 0.002 4.3E-08 69.0 16.1 214 165-409 395-624 (767)
129 PF10443 RNA12: RNA12 protein; 97.6 0.0031 6.6E-08 64.6 16.6 127 293-425 149-298 (431)
130 CHL00176 ftsH cell division pr 97.6 0.00081 1.7E-08 74.0 13.4 186 166-398 183-386 (638)
131 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0025 5.4E-08 62.7 15.7 22 198-219 22-43 (262)
132 PRK08058 DNA polymerase III su 97.6 0.0016 3.4E-08 66.4 14.6 162 168-371 7-180 (329)
133 PRK12377 putative replication 97.6 0.00044 9.5E-09 66.8 9.9 37 197-235 101-137 (248)
134 TIGR02639 ClpA ATP-dependent C 97.5 0.00084 1.8E-08 76.0 13.3 136 166-332 454-603 (731)
135 PRK06871 DNA polymerase III su 97.5 0.0045 9.7E-08 62.3 17.0 94 291-403 106-200 (325)
136 TIGR00763 lon ATP-dependent pr 97.5 0.0086 1.9E-07 68.3 20.8 51 166-220 320-370 (775)
137 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0005 1.1E-08 78.5 10.8 140 166-333 566-719 (852)
138 PRK10865 protein disaggregatio 97.5 0.00066 1.4E-08 77.8 11.8 53 166-219 568-620 (857)
139 PF02562 PhoH: PhoH-like prote 97.5 0.0004 8.6E-09 64.7 8.3 144 170-333 4-156 (205)
140 PRK08939 primosomal protein Dn 97.5 0.00087 1.9E-08 67.1 10.8 123 170-333 135-261 (306)
141 PRK06526 transposase; Provisio 97.5 0.00027 5.9E-09 68.8 7.0 24 197-220 98-121 (254)
142 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00063 1.4E-08 78.2 11.0 142 166-333 565-718 (852)
143 PF13177 DNA_pol3_delta2: DNA 97.4 0.0023 5E-08 57.9 12.2 119 170-333 1-142 (162)
144 COG2812 DnaX DNA polymerase II 97.4 0.00045 9.6E-09 73.0 8.5 189 166-400 16-214 (515)
145 TIGR01241 FtsH_fam ATP-depende 97.4 0.0022 4.7E-08 69.4 13.9 56 165-220 54-111 (495)
146 PRK07993 DNA polymerase III su 97.4 0.0067 1.5E-07 61.6 16.4 95 291-404 107-202 (334)
147 PRK06921 hypothetical protein; 97.4 0.0011 2.4E-08 65.1 10.2 37 197-235 117-154 (266)
148 PRK06090 DNA polymerase III su 97.4 0.0053 1.1E-07 61.6 15.1 94 291-406 107-201 (319)
149 PRK07952 DNA replication prote 97.4 0.0013 2.7E-08 63.5 10.3 36 197-234 99-134 (244)
150 KOG0744 AAA+-type ATPase [Post 97.4 0.0021 4.6E-08 62.5 11.5 81 196-302 176-260 (423)
151 PRK06835 DNA replication prote 97.3 0.00071 1.5E-08 68.3 8.6 36 198-235 184-219 (329)
152 PRK09183 transposase/IS protei 97.3 0.0011 2.3E-08 65.0 9.6 24 197-220 102-125 (259)
153 PRK06964 DNA polymerase III su 97.3 0.0061 1.3E-07 61.8 15.1 95 291-407 131-226 (342)
154 KOG0741 AAA+-type ATPase [Post 97.3 0.0021 4.5E-08 66.4 11.6 148 195-396 536-704 (744)
155 PF04665 Pox_A32: Poxvirus A32 97.3 0.00054 1.2E-08 65.3 7.1 37 197-235 13-49 (241)
156 PRK05541 adenylylsulfate kinas 97.3 0.00073 1.6E-08 62.2 7.7 36 196-233 6-41 (176)
157 TIGR02237 recomb_radB DNA repa 97.3 0.0014 3.1E-08 62.1 9.9 41 195-237 10-50 (209)
158 TIGR02902 spore_lonB ATP-depen 97.3 0.0021 4.6E-08 69.7 12.2 44 166-219 65-108 (531)
159 PRK04296 thymidine kinase; Pro 97.3 0.00071 1.5E-08 63.1 7.4 112 198-333 3-116 (190)
160 PRK04132 replication factor C 97.3 0.006 1.3E-07 68.7 15.5 156 203-404 570-729 (846)
161 COG1222 RPT1 ATP-dependent 26S 97.2 0.014 3E-07 57.9 15.6 59 167-227 152-213 (406)
162 PRK10787 DNA-binding ATP-depen 97.2 0.0012 2.5E-08 74.7 9.4 50 166-219 322-371 (784)
163 PRK09361 radB DNA repair and r 97.2 0.0024 5.3E-08 61.3 10.4 39 196-236 22-60 (225)
164 PF01695 IstB_IS21: IstB-like 97.2 0.00082 1.8E-08 61.8 6.7 37 197-235 47-83 (178)
165 PF00158 Sigma54_activat: Sigm 97.2 0.0011 2.4E-08 60.3 7.4 45 168-220 1-45 (168)
166 COG0470 HolB ATPase involved i 97.2 0.0034 7.3E-08 64.0 11.7 129 167-333 2-149 (325)
167 PRK11034 clpA ATP-dependent Cl 97.2 0.0017 3.7E-08 72.8 10.1 137 166-331 458-606 (758)
168 COG1484 DnaC DNA replication p 97.2 0.0021 4.5E-08 62.7 9.5 38 196-235 104-141 (254)
169 CHL00095 clpC Clp protease ATP 97.2 0.0014 3.1E-08 75.1 9.6 142 166-333 509-662 (821)
170 TIGR01243 CDC48 AAA family ATP 97.2 0.006 1.3E-07 69.3 14.4 55 166-220 453-510 (733)
171 TIGR01243 CDC48 AAA family ATP 97.1 0.0057 1.2E-07 69.5 14.1 54 166-219 178-234 (733)
172 PRK12608 transcription termina 97.1 0.0027 5.8E-08 64.4 10.1 101 175-301 120-229 (380)
173 PRK08118 topology modulation p 97.1 0.00068 1.5E-08 61.7 5.2 35 198-232 2-37 (167)
174 cd01120 RecA-like_NTPases RecA 97.1 0.0018 3.9E-08 58.4 8.0 40 199-240 1-40 (165)
175 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0035 7.7E-08 66.7 11.1 55 166-220 228-282 (489)
176 PHA00729 NTP-binding motif con 97.1 0.0034 7.3E-08 59.3 9.4 25 196-220 16-40 (226)
177 COG0466 Lon ATP-dependent Lon 97.0 0.0055 1.2E-07 66.0 11.5 165 166-373 323-508 (782)
178 KOG0733 Nuclear AAA ATPase (VC 97.0 0.025 5.4E-07 59.8 15.8 55 166-220 190-246 (802)
179 PF00910 RNA_helicase: RNA hel 97.0 0.0025 5.4E-08 53.2 7.2 21 200-220 1-21 (107)
180 PTZ00494 tuzin-like protein; P 97.0 0.059 1.3E-06 55.2 17.9 170 162-373 367-544 (664)
181 cd03228 ABCC_MRP_Like The MRP 97.0 0.0045 9.7E-08 56.7 9.6 127 196-333 27-155 (171)
182 PRK06067 flagellar accessory p 97.0 0.0076 1.7E-07 58.2 11.6 43 195-239 23-65 (234)
183 cd01394 radB RadB. The archaea 97.0 0.0062 1.3E-07 58.2 10.8 42 196-239 18-59 (218)
184 PLN00020 ribulose bisphosphate 97.0 0.027 5.9E-07 56.8 15.3 26 195-220 146-171 (413)
185 cd01393 recA_like RecA is a b 97.0 0.006 1.3E-07 58.6 10.8 44 196-241 18-67 (226)
186 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0092 2E-07 53.3 10.7 52 282-333 84-138 (159)
187 PRK08699 DNA polymerase III su 97.0 0.0086 1.9E-07 60.6 11.9 72 291-372 112-184 (325)
188 PF14532 Sigma54_activ_2: Sigm 96.9 0.00076 1.7E-08 59.3 3.7 108 169-333 1-110 (138)
189 KOG2228 Origin recognition com 96.9 0.0086 1.9E-07 58.8 11.0 176 166-373 24-219 (408)
190 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.006 1.3E-07 59.0 10.2 47 195-241 17-67 (235)
191 PF07728 AAA_5: AAA domain (dy 96.9 0.0004 8.7E-09 61.2 1.8 20 200-219 2-21 (139)
192 cd00544 CobU Adenosylcobinamid 96.9 0.0025 5.4E-08 57.9 6.8 37 199-240 1-37 (169)
193 cd03247 ABCC_cytochrome_bd The 96.9 0.0048 1E-07 56.9 8.9 127 197-333 28-157 (178)
194 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00099 2.1E-08 67.2 4.6 50 167-220 52-101 (361)
195 KOG0733 Nuclear AAA ATPase (VC 96.9 0.024 5.2E-07 60.0 14.4 134 197-374 545-693 (802)
196 PRK07261 topology modulation p 96.9 0.0025 5.3E-08 58.3 6.4 22 199-220 2-23 (171)
197 PF08423 Rad51: Rad51; InterP 96.8 0.0078 1.7E-07 58.8 10.2 48 196-243 37-88 (256)
198 PRK05800 cobU adenosylcobinami 96.8 0.0013 2.9E-08 59.8 4.5 21 199-219 3-23 (170)
199 cd03214 ABC_Iron-Siderophores_ 96.8 0.013 2.8E-07 54.1 11.2 124 197-333 25-158 (180)
200 cd01124 KaiC KaiC is a circadi 96.8 0.0051 1.1E-07 57.1 8.5 39 199-239 1-39 (187)
201 KOG1969 DNA replication checkp 96.8 0.0038 8.3E-08 67.1 8.2 88 194-318 323-412 (877)
202 PRK14722 flhF flagellar biosyn 96.8 0.0099 2.2E-07 60.8 11.0 105 196-317 136-240 (374)
203 KOG2004 Mitochondrial ATP-depe 96.8 0.013 2.8E-07 63.0 11.9 67 166-241 411-477 (906)
204 PF07693 KAP_NTPase: KAP famil 96.8 0.056 1.2E-06 55.1 16.6 42 172-220 2-43 (325)
205 PF13207 AAA_17: AAA domain; P 96.8 0.001 2.2E-08 57.0 3.1 21 199-219 1-21 (121)
206 KOG2035 Replication factor C, 96.8 0.007 1.5E-07 57.7 8.8 223 168-427 15-259 (351)
207 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.017 3.7E-07 55.9 11.9 43 195-239 19-61 (237)
208 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0082 1.8E-07 58.5 9.5 44 196-241 68-112 (274)
209 cd03230 ABC_DR_subfamily_A Thi 96.8 0.005 1.1E-07 56.4 7.7 125 197-333 26-155 (173)
210 cd03246 ABCC_Protease_Secretio 96.8 0.0053 1.2E-07 56.3 7.9 126 197-333 28-156 (173)
211 PRK11608 pspF phage shock prot 96.7 0.0054 1.2E-07 62.4 8.6 46 166-219 6-51 (326)
212 PF13604 AAA_30: AAA domain; P 96.7 0.0044 9.6E-08 58.0 7.3 23 197-219 18-40 (196)
213 cd03223 ABCD_peroxisomal_ALDP 96.7 0.021 4.4E-07 52.0 11.4 116 196-333 26-148 (166)
214 KOG0734 AAA+-type ATPase conta 96.7 0.012 2.5E-07 61.2 10.5 53 167-220 305-360 (752)
215 cd03369 ABCC_NFT1 Domain 2 of 96.7 0.028 6E-07 53.2 12.8 50 284-333 135-184 (207)
216 TIGR02012 tigrfam_recA protein 96.7 0.0053 1.1E-07 61.5 8.0 85 195-302 53-143 (321)
217 COG1875 NYN ribonuclease and A 96.7 0.014 3.1E-07 57.9 10.7 41 168-218 226-266 (436)
218 PRK06696 uridine kinase; Valid 96.7 0.0027 5.9E-08 60.9 5.8 44 170-220 2-45 (223)
219 PRK15429 formate hydrogenlyase 96.7 0.0087 1.9E-07 67.5 10.8 47 166-220 376-422 (686)
220 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.011 2.3E-07 52.4 9.2 102 197-333 26-127 (144)
221 TIGR02974 phageshock_pspF psp 96.7 0.0066 1.4E-07 61.7 8.8 45 168-220 1-45 (329)
222 KOG0735 AAA+-type ATPase [Post 96.7 0.019 4.2E-07 61.7 12.1 42 195-237 429-470 (952)
223 COG1136 SalX ABC-type antimicr 96.7 0.021 4.5E-07 54.0 11.1 76 258-333 119-203 (226)
224 COG1223 Predicted ATPase (AAA+ 96.7 0.029 6.3E-07 53.1 11.9 181 166-400 121-319 (368)
225 TIGR02238 recomb_DMC1 meiotic 96.7 0.011 2.5E-07 59.3 10.0 46 196-241 95-144 (313)
226 TIGR01817 nifA Nif-specific re 96.7 0.0098 2.1E-07 65.1 10.3 49 164-220 194-242 (534)
227 PRK11889 flhF flagellar biosyn 96.6 0.022 4.8E-07 58.1 11.8 25 196-220 240-264 (436)
228 PRK08533 flagellar accessory p 96.6 0.014 3.1E-07 56.1 10.3 40 196-237 23-62 (230)
229 cd03216 ABC_Carb_Monos_I This 96.6 0.0086 1.9E-07 54.3 8.3 116 197-333 26-142 (163)
230 cd00983 recA RecA is a bacter 96.6 0.0059 1.3E-07 61.2 7.7 45 195-241 53-97 (325)
231 COG1066 Sms Predicted ATP-depe 96.6 0.015 3.2E-07 58.9 10.3 84 196-304 92-180 (456)
232 PF00448 SRP54: SRP54-type pro 96.6 0.01 2.2E-07 55.4 8.8 39 197-237 1-39 (196)
233 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.031 6.7E-07 53.7 12.1 137 197-333 30-199 (254)
234 cd03238 ABC_UvrA The excision 96.6 0.02 4.3E-07 52.4 10.5 120 196-333 20-149 (176)
235 TIGR03499 FlhF flagellar biosy 96.6 0.0076 1.7E-07 59.9 8.2 25 196-220 193-217 (282)
236 COG0468 RecA RecA/RadA recombi 96.5 0.013 2.9E-07 57.3 9.3 92 195-301 58-150 (279)
237 cd03244 ABCC_MRP_domain2 Domai 96.5 0.049 1.1E-06 52.0 13.3 50 284-333 149-198 (221)
238 PRK05022 anaerobic nitric oxid 96.5 0.011 2.4E-07 64.1 9.6 48 165-220 186-233 (509)
239 KOG0730 AAA+-type ATPase [Post 96.5 0.024 5.2E-07 60.6 11.6 59 167-227 435-496 (693)
240 cd03269 ABC_putative_ATPase Th 96.5 0.027 5.9E-07 53.4 11.3 50 284-333 138-188 (210)
241 PRK05973 replicative DNA helic 96.5 0.013 2.8E-07 56.2 8.9 42 196-239 63-104 (237)
242 cd03229 ABC_Class3 This class 96.5 0.0069 1.5E-07 55.8 6.8 50 284-333 110-161 (178)
243 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.0036 7.9E-08 59.4 5.1 23 197-219 29-51 (213)
244 PRK09354 recA recombinase A; P 96.5 0.0093 2E-07 60.3 8.2 85 195-302 58-148 (349)
245 cd01131 PilT Pilus retraction 96.5 0.0054 1.2E-07 57.5 6.2 108 198-333 2-109 (198)
246 cd03263 ABC_subfamily_A The AB 96.5 0.029 6.3E-07 53.6 11.3 50 284-333 143-192 (220)
247 COG0467 RAD55 RecA-superfamily 96.5 0.0022 4.8E-08 63.1 3.6 45 195-241 21-65 (260)
248 PHA02244 ATPase-like protein 96.5 0.013 2.7E-07 59.4 8.8 22 198-219 120-141 (383)
249 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0075 1.6E-07 55.3 6.6 23 197-219 25-47 (177)
250 PRK13538 cytochrome c biogenes 96.4 0.034 7.4E-07 52.4 11.3 50 284-333 139-189 (204)
251 PRK13540 cytochrome c biogenes 96.4 0.037 8.1E-07 52.0 11.5 51 283-333 136-187 (200)
252 COG4618 ArpD ABC-type protease 96.4 0.036 7.8E-07 57.6 11.9 23 197-219 362-384 (580)
253 PLN03187 meiotic recombination 96.4 0.02 4.4E-07 58.1 10.1 46 196-241 125-174 (344)
254 COG2884 FtsE Predicted ATPase 96.4 0.037 8.1E-07 50.1 10.5 55 279-333 142-197 (223)
255 PF01583 APS_kinase: Adenylyls 96.4 0.0023 5E-08 56.8 2.7 36 197-234 2-37 (156)
256 PF03215 Rad17: Rad17 cell cyc 96.4 0.033 7.1E-07 59.9 12.0 61 166-235 19-79 (519)
257 PRK11247 ssuB aliphatic sulfon 96.4 0.045 9.9E-07 53.6 12.1 137 197-333 38-194 (257)
258 PRK08233 hypothetical protein; 96.4 0.012 2.7E-07 54.2 7.8 24 197-220 3-26 (182)
259 PRK13695 putative NTPase; Prov 96.4 0.013 2.9E-07 53.6 7.8 22 199-220 2-23 (174)
260 cd03264 ABC_drug_resistance_li 96.3 0.039 8.4E-07 52.4 11.2 51 283-333 139-189 (211)
261 cd03231 ABC_CcmA_heme_exporter 96.3 0.041 8.8E-07 51.8 11.1 135 196-333 25-185 (201)
262 PF07724 AAA_2: AAA domain (Cd 96.3 0.0054 1.2E-07 55.9 4.9 39 197-237 3-42 (171)
263 PF00154 RecA: recA bacterial 96.3 0.012 2.5E-07 58.9 7.6 85 195-302 51-141 (322)
264 cd03254 ABCC_Glucan_exporter_l 96.3 0.037 8E-07 53.2 11.0 52 282-333 147-198 (229)
265 PRK04301 radA DNA repair and r 96.3 0.029 6.3E-07 56.9 10.7 46 196-241 101-150 (317)
266 COG4608 AppF ABC-type oligopep 96.3 0.021 4.6E-07 54.9 8.9 124 196-333 38-170 (268)
267 PRK12724 flagellar biosynthesi 96.3 0.022 4.8E-07 58.8 9.7 25 196-220 222-246 (432)
268 PRK13539 cytochrome c biogenes 96.3 0.035 7.6E-07 52.5 10.5 50 284-333 137-187 (207)
269 cd03258 ABC_MetN_methionine_tr 96.3 0.04 8.8E-07 53.1 11.1 50 284-333 150-201 (233)
270 PRK14974 cell division protein 96.3 0.036 7.8E-07 56.1 10.9 24 196-219 139-162 (336)
271 TIGR02868 CydC thiol reductant 96.3 0.056 1.2E-06 59.2 13.5 25 196-220 360-384 (529)
272 TIGR02236 recomb_radA DNA repa 96.3 0.028 6E-07 56.9 10.3 46 196-241 94-143 (310)
273 cd03297 ABC_ModC_molybdenum_tr 96.3 0.037 8E-07 52.6 10.6 23 198-220 24-46 (214)
274 cd03235 ABC_Metallic_Cations A 96.3 0.075 1.6E-06 50.5 12.7 50 284-333 142-192 (213)
275 PRK12723 flagellar biosynthesi 96.3 0.041 9E-07 56.8 11.5 107 196-319 173-282 (388)
276 PRK11124 artP arginine transpo 96.3 0.044 9.6E-07 53.2 11.3 50 284-333 151-201 (242)
277 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.3 0.06 1.3E-06 51.6 12.1 24 197-220 48-71 (224)
278 cd03245 ABCC_bacteriocin_expor 96.3 0.045 9.8E-07 52.2 11.2 50 284-333 150-199 (220)
279 PRK07667 uridine kinase; Provi 96.2 0.0086 1.9E-07 55.9 6.0 37 175-219 3-39 (193)
280 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.05 1.1E-06 52.0 11.4 135 197-333 30-192 (220)
281 PRK13543 cytochrome c biogenes 96.2 0.056 1.2E-06 51.4 11.7 137 197-333 37-197 (214)
282 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.2 0.044 9.6E-07 52.2 11.0 50 284-333 150-201 (218)
283 COG1124 DppF ABC-type dipeptid 96.2 0.06 1.3E-06 50.8 11.3 24 196-219 32-55 (252)
284 PF10236 DAP3: Mitochondrial r 96.2 0.086 1.9E-06 53.1 13.4 49 354-403 258-306 (309)
285 PF13481 AAA_25: AAA domain; P 96.2 0.015 3.3E-07 54.2 7.6 43 197-239 32-82 (193)
286 KOG0739 AAA+-type ATPase [Post 96.2 0.053 1.2E-06 52.4 11.0 54 167-220 134-189 (439)
287 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.054 1.2E-06 52.1 11.6 42 196-239 19-60 (229)
288 TIGR02239 recomb_RAD51 DNA rep 96.2 0.025 5.4E-07 57.0 9.5 46 196-241 95-144 (316)
289 PRK12726 flagellar biosynthesi 96.2 0.099 2.1E-06 53.3 13.5 92 196-304 205-297 (407)
290 cd03215 ABC_Carb_Monos_II This 96.2 0.031 6.8E-07 51.6 9.5 50 284-333 114-164 (182)
291 cd03259 ABC_Carb_Solutes_like 96.2 0.036 7.9E-07 52.6 10.2 50 284-333 140-191 (213)
292 PRK11248 tauB taurine transpor 96.2 0.057 1.2E-06 52.9 11.8 50 284-333 138-189 (255)
293 COG0542 clpA ATP-binding subun 96.2 0.0046 9.9E-08 68.3 4.2 44 166-219 170-213 (786)
294 PRK10733 hflB ATP-dependent me 96.2 0.033 7.1E-07 62.1 11.0 54 166-219 152-207 (644)
295 PRK12727 flagellar biosynthesi 96.2 0.027 5.8E-07 59.8 9.7 24 196-219 349-372 (559)
296 TIGR01166 cbiO cobalt transpor 96.2 0.083 1.8E-06 49.2 12.2 50 284-333 137-187 (190)
297 cd03225 ABC_cobalt_CbiO_domain 96.2 0.075 1.6E-06 50.4 12.1 50 284-333 144-194 (211)
298 TIGR03522 GldA_ABC_ATP gliding 96.2 0.06 1.3E-06 54.2 12.0 50 284-333 143-192 (301)
299 COG1618 Predicted nucleotide k 96.1 0.0051 1.1E-07 53.9 3.5 24 197-220 5-28 (179)
300 PF00485 PRK: Phosphoribulokin 96.1 0.022 4.8E-07 53.3 8.2 21 199-219 1-21 (194)
301 TIGR00960 3a0501s02 Type II (G 96.1 0.057 1.2E-06 51.4 11.2 50 284-333 148-198 (216)
302 PRK14247 phosphate ABC transpo 96.1 0.079 1.7E-06 51.7 12.3 50 284-333 156-205 (250)
303 PRK00889 adenylylsulfate kinas 96.1 0.021 4.6E-07 52.4 7.8 25 196-220 3-27 (175)
304 cd02027 APSK Adenosine 5'-phos 96.1 0.052 1.1E-06 48.3 10.0 22 199-220 1-22 (149)
305 PRK15455 PrkA family serine pr 96.1 0.0058 1.3E-07 65.0 4.4 49 167-219 77-125 (644)
306 PRK14269 phosphate ABC transpo 96.1 0.071 1.5E-06 51.9 11.9 53 281-333 149-201 (246)
307 cd03296 ABC_CysA_sulfate_impor 96.1 0.056 1.2E-06 52.4 11.1 24 197-220 28-51 (239)
308 cd03282 ABC_MSH4_euk MutS4 hom 96.1 0.011 2.3E-07 55.7 5.8 23 197-219 29-51 (204)
309 COG1126 GlnQ ABC-type polar am 96.1 0.072 1.6E-06 49.4 10.8 134 196-332 27-195 (240)
310 cd01121 Sms Sms (bacterial rad 96.1 0.024 5.2E-07 58.4 8.8 40 196-237 81-120 (372)
311 PRK10820 DNA-binding transcrip 96.1 0.028 6.1E-07 61.0 9.7 46 166-219 204-249 (520)
312 cd03266 ABC_NatA_sodium_export 96.1 0.056 1.2E-06 51.5 10.9 24 197-220 31-54 (218)
313 cd03300 ABC_PotA_N PotA is an 96.1 0.056 1.2E-06 52.1 10.9 51 283-333 139-191 (232)
314 cd03252 ABCC_Hemolysin The ABC 96.1 0.082 1.8E-06 51.1 12.1 49 285-333 149-197 (237)
315 cd01122 GP4d_helicase GP4d_hel 96.1 0.068 1.5E-06 52.9 11.7 42 196-238 29-70 (271)
316 COG2274 SunT ABC-type bacterio 96.1 0.031 6.7E-07 62.4 10.1 50 284-333 619-669 (709)
317 TIGR01277 thiQ thiamine ABC tr 96.1 0.077 1.7E-06 50.4 11.6 50 284-333 138-189 (213)
318 COG1419 FlhF Flagellar GTP-bin 96.1 0.053 1.2E-06 55.3 10.8 107 196-320 202-310 (407)
319 PRK09544 znuC high-affinity zi 96.1 0.068 1.5E-06 52.2 11.4 137 196-333 29-181 (251)
320 cd03268 ABC_BcrA_bacitracin_re 96.1 0.046 1E-06 51.7 10.0 50 284-333 136-186 (208)
321 cd03298 ABC_ThiQ_thiamine_tran 96.1 0.094 2E-06 49.7 12.2 50 284-333 138-189 (211)
322 cd03261 ABC_Org_Solvent_Resist 96.0 0.061 1.3E-06 52.0 11.0 50 284-333 146-197 (235)
323 cd03115 SRP The signal recogni 96.0 0.053 1.1E-06 49.6 10.1 22 199-220 2-23 (173)
324 TIGR03864 PQQ_ABC_ATP ABC tran 96.0 0.059 1.3E-06 52.1 10.9 50 284-333 142-193 (236)
325 TIGR03608 L_ocin_972_ABC putat 96.0 0.067 1.5E-06 50.5 11.1 51 283-333 143-194 (206)
326 cd03253 ABCC_ATM1_transporter 96.0 0.055 1.2E-06 52.3 10.7 51 283-333 146-196 (236)
327 cd03226 ABC_cobalt_CbiO_domain 96.0 0.091 2E-06 49.6 11.9 137 197-333 26-186 (205)
328 TIGR02673 FtsE cell division A 96.0 0.065 1.4E-06 50.9 11.0 24 197-220 28-51 (214)
329 PF08433 KTI12: Chromatin asso 96.0 0.019 4.1E-07 56.4 7.3 23 198-220 2-24 (270)
330 PLN03186 DNA repair protein RA 96.0 0.043 9.4E-07 55.8 10.1 46 196-241 122-171 (342)
331 cd03219 ABC_Mj1267_LivG_branch 96.0 0.069 1.5E-06 51.6 11.3 24 197-220 26-49 (236)
332 cd03301 ABC_MalK_N The N-termi 96.0 0.07 1.5E-06 50.6 11.1 24 197-220 26-49 (213)
333 TIGR03740 galliderm_ABC gallid 96.0 0.054 1.2E-06 51.9 10.4 50 284-333 134-184 (223)
334 PRK13531 regulatory ATPase Rav 96.0 0.0069 1.5E-07 63.6 4.3 43 166-220 20-62 (498)
335 PRK04328 hypothetical protein; 96.0 0.038 8.1E-07 53.9 9.3 43 196-240 22-64 (249)
336 PTZ00035 Rad51 protein; Provis 96.0 0.057 1.2E-06 55.0 10.9 46 196-241 117-166 (337)
337 cd02025 PanK Pantothenate kina 96.0 0.027 5.9E-07 53.7 8.1 21 199-219 1-21 (220)
338 PF13238 AAA_18: AAA domain; P 96.0 0.005 1.1E-07 53.0 2.9 21 200-220 1-21 (129)
339 KOG0728 26S proteasome regulat 96.0 0.49 1.1E-05 44.7 15.8 63 168-237 148-214 (404)
340 KOG0736 Peroxisome assembly fa 96.0 0.14 3E-06 56.0 13.9 55 166-220 672-728 (953)
341 PRK13541 cytochrome c biogenes 96.0 0.084 1.8E-06 49.4 11.3 24 197-220 26-49 (195)
342 cd01125 repA Hexameric Replica 96.0 0.056 1.2E-06 52.4 10.4 21 199-219 3-23 (239)
343 cd03213 ABCG_EPDR ABCG transpo 96.0 0.04 8.7E-07 51.5 9.1 50 284-333 121-171 (194)
344 cd03265 ABC_DrrA DrrA is the A 96.0 0.076 1.6E-06 50.7 11.2 24 197-220 26-49 (220)
345 COG0464 SpoVK ATPases of the A 96.0 0.12 2.6E-06 56.0 14.1 136 196-374 275-424 (494)
346 TIGR03005 ectoine_ehuA ectoine 96.0 0.071 1.5E-06 52.1 11.2 50 284-333 156-207 (252)
347 KOG0731 AAA+-type ATPase conta 96.0 0.25 5.5E-06 54.6 16.2 192 166-403 311-521 (774)
348 TIGR00708 cobA cob(I)alamin ad 96.0 0.11 2.3E-06 47.1 11.2 53 281-333 85-140 (173)
349 PRK00771 signal recognition pa 96.0 0.092 2E-06 55.2 12.5 25 196-220 94-118 (437)
350 cd03295 ABC_OpuCA_Osmoprotecti 96.0 0.069 1.5E-06 51.9 11.0 24 197-220 27-50 (242)
351 PRK10247 putative ABC transpor 96.0 0.072 1.5E-06 51.1 11.0 50 284-333 147-198 (225)
352 cd03292 ABC_FtsE_transporter F 96.0 0.084 1.8E-06 50.1 11.4 50 284-333 146-196 (214)
353 PRK11629 lolD lipoprotein tran 96.0 0.11 2.3E-06 50.2 12.2 50 284-333 155-206 (233)
354 COG4088 Predicted nucleotide k 95.9 0.017 3.7E-07 52.8 6.0 23 198-220 2-24 (261)
355 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.028 6.1E-07 50.5 7.6 115 197-333 25-140 (157)
356 TIGR01188 drrA daunorubicin re 95.9 0.085 1.8E-06 53.1 11.8 50 284-333 134-184 (302)
357 cd03262 ABC_HisP_GlnQ_permease 95.9 0.076 1.6E-06 50.4 10.9 50 284-333 145-195 (213)
358 PTZ00301 uridine kinase; Provi 95.9 0.0092 2E-07 56.3 4.4 23 197-219 3-25 (210)
359 TIGR03873 F420-0_ABC_ATP propo 95.9 0.094 2E-06 51.4 11.8 51 283-333 146-197 (256)
360 TIGR01189 ccmA heme ABC export 95.9 0.082 1.8E-06 49.5 10.9 50 284-333 137-187 (198)
361 TIGR02211 LolD_lipo_ex lipopro 95.9 0.09 1.9E-06 50.2 11.4 24 197-220 31-54 (221)
362 cd03224 ABC_TM1139_LivF_branch 95.9 0.078 1.7E-06 50.7 11.0 50 284-333 142-192 (222)
363 cd03267 ABC_NatA_like Similar 95.9 0.1 2.2E-06 50.4 11.8 50 284-333 163-214 (236)
364 PF06745 KaiC: KaiC; InterPro 95.9 0.012 2.7E-07 56.5 5.3 44 195-239 17-60 (226)
365 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.08 1.7E-06 51.5 11.0 138 196-333 24-176 (246)
366 TIGR03411 urea_trans_UrtD urea 95.9 0.1 2.2E-06 50.6 11.8 51 283-333 152-202 (242)
367 COG0572 Udk Uridine kinase [Nu 95.9 0.016 3.6E-07 54.0 5.8 24 196-219 7-30 (218)
368 PRK09493 glnQ glutamine ABC tr 95.9 0.084 1.8E-06 51.2 11.1 24 197-220 27-50 (240)
369 cd03283 ABC_MutS-like MutS-lik 95.8 0.061 1.3E-06 50.4 9.7 22 198-219 26-47 (199)
370 PRK10418 nikD nickel transport 95.8 0.12 2.6E-06 50.5 12.2 24 197-220 29-52 (254)
371 KOG1051 Chaperone HSP104 and r 95.8 0.079 1.7E-06 59.7 11.9 122 167-319 563-686 (898)
372 PF13671 AAA_33: AAA domain; P 95.8 0.007 1.5E-07 53.4 3.1 21 199-219 1-21 (143)
373 PRK05439 pantothenate kinase; 95.8 0.048 1E-06 54.5 9.2 25 195-219 84-108 (311)
374 PRK10867 signal recognition pa 95.8 0.063 1.4E-06 56.3 10.6 24 196-219 99-122 (433)
375 cd03294 ABC_Pro_Gly_Bertaine T 95.8 0.12 2.5E-06 51.1 12.1 50 284-333 170-221 (269)
376 PRK10908 cell division protein 95.8 0.12 2.6E-06 49.4 11.8 25 196-220 27-51 (222)
377 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.8 0.1 2.2E-06 50.5 11.6 50 284-333 149-198 (238)
378 PRK11264 putative amino-acid A 95.8 0.11 2.4E-06 50.7 11.8 50 284-333 154-204 (250)
379 cd03250 ABCC_MRP_domain1 Domai 95.8 0.22 4.7E-06 46.9 13.4 53 281-333 134-188 (204)
380 PRK10619 histidine/lysine/argi 95.8 0.11 2.3E-06 51.1 11.6 52 282-333 160-212 (257)
381 cd03217 ABC_FeS_Assembly ABC-t 95.8 0.047 1E-06 51.3 8.8 50 284-333 114-164 (200)
382 TIGR00064 ftsY signal recognit 95.8 0.053 1.1E-06 53.5 9.4 39 196-236 71-109 (272)
383 cd03232 ABC_PDR_domain2 The pl 95.8 0.059 1.3E-06 50.2 9.4 23 197-219 33-55 (192)
384 cd02019 NK Nucleoside/nucleoti 95.8 0.0063 1.4E-07 46.2 2.2 22 199-220 1-22 (69)
385 PRK05986 cob(I)alamin adenolsy 95.8 0.11 2.4E-06 47.7 10.7 53 281-333 103-158 (191)
386 TIGR00235 udk uridine kinase. 95.8 0.0076 1.6E-07 57.0 3.3 25 195-219 4-28 (207)
387 PRK05703 flhF flagellar biosyn 95.8 0.054 1.2E-06 57.0 9.8 39 197-235 221-259 (424)
388 PRK14250 phosphate ABC transpo 95.8 0.13 2.8E-06 49.9 11.9 50 284-333 141-192 (241)
389 TIGR00968 3a0106s01 sulfate AB 95.8 0.085 1.9E-06 51.0 10.6 50 284-333 140-191 (237)
390 PRK14256 phosphate ABC transpo 95.7 0.14 3E-06 50.0 12.3 23 197-219 30-52 (252)
391 TIGR00554 panK_bact pantothena 95.7 0.047 1E-06 54.1 8.8 24 196-219 61-84 (290)
392 cd03251 ABCC_MsbA MsbA is an e 95.7 0.12 2.7E-06 49.8 11.7 51 283-333 147-197 (234)
393 PRK10575 iron-hydroxamate tran 95.7 0.12 2.6E-06 51.0 11.8 52 282-333 155-208 (265)
394 cd03256 ABC_PhnC_transporter A 95.7 0.1 2.2E-06 50.6 11.2 50 284-333 154-205 (241)
395 PRK10771 thiQ thiamine transpo 95.7 0.14 3E-06 49.4 12.0 50 284-333 139-190 (232)
396 cd03299 ABC_ModC_like Archeal 95.7 0.11 2.3E-06 50.3 11.2 24 197-220 25-48 (235)
397 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.02 4.4E-07 56.2 6.2 43 195-239 34-76 (259)
398 TIGR03880 KaiC_arch_3 KaiC dom 95.7 0.029 6.4E-07 53.8 7.2 43 196-240 15-57 (224)
399 PRK14267 phosphate ABC transpo 95.7 0.12 2.6E-06 50.5 11.7 50 284-333 159-208 (253)
400 PRK10584 putative ABC transpor 95.7 0.12 2.6E-06 49.6 11.6 50 284-333 156-207 (228)
401 TIGR02315 ABC_phnC phosphonate 95.7 0.095 2.1E-06 50.9 10.9 24 197-220 28-51 (243)
402 PRK05480 uridine/cytidine kina 95.7 0.0087 1.9E-07 56.7 3.5 25 196-220 5-29 (209)
403 TIGR00959 ffh signal recogniti 95.7 0.084 1.8E-06 55.3 11.0 25 196-220 98-122 (428)
404 TIGR01184 ntrCD nitrate transp 95.7 0.094 2E-06 50.5 10.7 50 284-333 124-175 (230)
405 PRK03846 adenylylsulfate kinas 95.7 0.037 8E-07 51.9 7.7 25 195-219 22-46 (198)
406 PRK11823 DNA repair protein Ra 95.7 0.064 1.4E-06 56.9 10.2 40 196-237 79-118 (446)
407 COG1117 PstB ABC-type phosphat 95.7 0.089 1.9E-06 48.7 9.5 25 195-219 31-55 (253)
408 PF03969 AFG1_ATPase: AFG1-lik 95.7 0.03 6.6E-07 57.4 7.5 26 196-221 61-86 (362)
409 COG1131 CcmA ABC-type multidru 95.7 0.091 2E-06 52.5 10.7 134 197-333 31-197 (293)
410 PRK13650 cbiO cobalt transport 95.7 0.1 2.3E-06 51.8 11.0 52 282-333 148-201 (279)
411 PRK11144 modC molybdate transp 95.7 0.098 2.1E-06 53.8 11.2 24 197-220 24-47 (352)
412 TIGR03574 selen_PSTK L-seryl-t 95.7 0.03 6.5E-07 54.7 7.1 22 199-220 1-22 (249)
413 cd03290 ABCC_SUR1_N The SUR do 95.6 0.23 5E-06 47.3 13.1 24 197-220 27-50 (218)
414 cd03289 ABCC_CFTR2 The CFTR su 95.6 0.18 3.8E-06 50.0 12.4 49 285-333 149-197 (275)
415 TIGR02655 circ_KaiC circadian 95.6 0.05 1.1E-06 58.6 9.2 43 195-239 261-303 (484)
416 cd03240 ABC_Rad50 The catalyti 95.6 0.061 1.3E-06 50.7 8.8 50 284-333 131-183 (204)
417 PRK13537 nodulation ABC transp 95.6 0.14 3.1E-06 51.5 12.0 50 284-333 148-198 (306)
418 PTZ00088 adenylate kinase 1; P 95.6 0.039 8.4E-07 52.9 7.5 21 199-219 8-28 (229)
419 KOG0727 26S proteasome regulat 95.6 0.084 1.8E-06 49.7 9.3 53 167-220 156-212 (408)
420 PRK14272 phosphate ABC transpo 95.6 0.17 3.8E-06 49.4 12.3 50 284-333 158-207 (252)
421 cd03260 ABC_PstB_phosphate_tra 95.6 0.12 2.6E-06 49.6 11.0 23 197-219 26-48 (227)
422 KOG0738 AAA+-type ATPase [Post 95.6 0.052 1.1E-06 54.4 8.4 35 20-54 11-45 (491)
423 PRK13546 teichoic acids export 95.6 0.19 4.2E-06 49.4 12.6 24 197-220 50-73 (264)
424 PRK14261 phosphate ABC transpo 95.6 0.17 3.6E-06 49.5 12.2 50 284-333 159-208 (253)
425 TIGR02329 propionate_PrpR prop 95.6 0.033 7.1E-07 60.1 7.6 47 166-220 212-258 (526)
426 COG1703 ArgK Putative periplas 95.6 0.016 3.5E-07 56.2 4.7 47 195-241 49-95 (323)
427 TIGR03771 anch_rpt_ABC anchore 95.6 0.19 4.2E-06 48.0 12.3 51 283-333 122-173 (223)
428 PRK10895 lipopolysaccharide AB 95.6 0.12 2.6E-06 50.2 10.9 24 197-220 29-52 (241)
429 TIGR01193 bacteriocin_ABC ABC- 95.6 0.12 2.6E-06 58.7 12.6 24 196-219 499-522 (708)
430 KOG1970 Checkpoint RAD17-RFC c 95.6 0.26 5.6E-06 51.9 13.5 44 172-220 88-133 (634)
431 PRK14723 flhF flagellar biosyn 95.6 0.16 3.5E-06 56.7 12.9 40 197-236 185-224 (767)
432 TIGR00150 HI0065_YjeE ATPase, 95.6 0.018 3.8E-07 49.8 4.4 25 196-220 21-45 (133)
433 PRK10744 pstB phosphate transp 95.6 0.16 3.6E-06 49.8 12.0 51 283-333 165-215 (260)
434 PRK06762 hypothetical protein; 95.6 0.0087 1.9E-07 54.4 2.7 22 198-219 3-24 (166)
435 PRK10923 glnG nitrogen regulat 95.6 0.081 1.8E-06 57.0 10.6 47 166-220 138-184 (469)
436 COG1116 TauB ABC-type nitrate/ 95.6 0.093 2E-06 49.9 9.5 24 196-219 28-51 (248)
437 PRK14235 phosphate transporter 95.5 0.16 3.4E-06 50.2 11.7 50 284-333 173-222 (267)
438 PRK13545 tagH teichoic acids e 95.5 0.2 4.3E-06 53.6 12.9 134 197-333 50-203 (549)
439 KOG1532 GTPase XAB1, interacts 95.5 0.066 1.4E-06 51.1 8.3 27 195-221 17-43 (366)
440 PF03308 ArgK: ArgK protein; 95.5 0.017 3.6E-07 55.3 4.4 60 174-241 14-73 (266)
441 PRK11388 DNA-binding transcrip 95.5 0.055 1.2E-06 60.7 9.3 47 166-220 325-371 (638)
442 TIGR03410 urea_trans_UrtE urea 95.5 0.13 2.8E-06 49.5 10.7 25 196-220 25-49 (230)
443 PRK14268 phosphate ABC transpo 95.5 0.16 3.5E-06 49.8 11.6 50 284-333 164-213 (258)
444 cd03291 ABCC_CFTR1 The CFTR su 95.5 0.2 4.3E-06 49.8 12.2 25 196-220 62-86 (282)
445 cd03218 ABC_YhbG The ABC trans 95.5 0.15 3.3E-06 49.1 11.2 24 197-220 26-49 (232)
446 PRK14246 phosphate ABC transpo 95.5 0.21 4.6E-06 48.9 12.4 52 282-333 161-212 (257)
447 PRK14257 phosphate ABC transpo 95.5 0.18 3.8E-06 51.4 12.0 24 197-220 108-131 (329)
448 TIGR00416 sms DNA repair prote 95.4 0.08 1.7E-06 56.2 9.8 40 196-237 93-132 (454)
449 TIGR02770 nickel_nikD nickel i 95.4 0.18 3.9E-06 48.5 11.5 25 196-220 11-35 (230)
450 PRK11153 metN DL-methionine tr 95.4 0.14 3.1E-06 52.5 11.4 50 284-333 150-201 (343)
451 PRK14271 phosphate ABC transpo 95.4 0.18 3.9E-06 50.0 11.8 25 196-220 46-70 (276)
452 PRK11160 cysteine/glutathione 95.4 0.12 2.7E-06 57.1 11.7 25 196-220 365-389 (574)
453 COG0563 Adk Adenylate kinase a 95.4 0.03 6.4E-07 51.4 5.7 22 199-220 2-23 (178)
454 PRK11831 putative ABC transpor 95.4 0.16 3.5E-06 50.2 11.4 50 284-333 153-204 (269)
455 cd03233 ABC_PDR_domain1 The pl 95.4 0.1 2.2E-06 49.1 9.5 24 197-220 33-56 (202)
456 PRK13632 cbiO cobalt transport 95.4 0.15 3.3E-06 50.4 11.2 24 197-220 35-58 (271)
457 PRK06547 hypothetical protein; 95.4 0.014 3.1E-07 53.2 3.4 25 196-220 14-38 (172)
458 PRK14244 phosphate ABC transpo 95.4 0.17 3.6E-06 49.5 11.3 50 284-333 159-208 (251)
459 PRK13648 cbiO cobalt transport 95.4 0.16 3.5E-06 50.2 11.2 24 197-220 35-58 (269)
460 TIGR00972 3a0107s01c2 phosphat 95.4 0.24 5.1E-06 48.3 12.3 24 196-219 26-49 (247)
461 PRK07132 DNA polymerase III su 95.4 0.78 1.7E-05 45.8 15.9 96 291-406 89-185 (299)
462 PRK14262 phosphate ABC transpo 95.4 0.18 3.9E-06 49.2 11.4 51 283-333 155-205 (250)
463 TIGR03796 NHPM_micro_ABC1 NHPM 95.3 0.23 4.9E-06 56.6 13.8 25 196-220 504-528 (710)
464 TIGR01288 nodI ATP-binding ABC 95.3 0.22 4.7E-06 50.2 12.2 50 284-333 145-195 (303)
465 TIGR01360 aden_kin_iso1 adenyl 95.3 0.014 3.1E-07 54.1 3.4 24 196-219 2-25 (188)
466 PRK14259 phosphate ABC transpo 95.3 0.23 4.9E-06 49.1 12.1 25 196-220 38-62 (269)
467 PRK11231 fecE iron-dicitrate t 95.3 0.21 4.6E-06 48.8 11.8 50 284-333 148-198 (255)
468 PRK09302 circadian clock prote 95.3 0.086 1.9E-06 57.3 9.8 118 192-330 26-174 (509)
469 TIGR01420 pilT_fam pilus retra 95.3 0.036 7.9E-07 56.8 6.5 108 197-332 122-229 (343)
470 PRK14258 phosphate ABC transpo 95.3 0.26 5.7E-06 48.4 12.4 52 282-333 158-211 (261)
471 TIGR02314 ABC_MetN D-methionin 95.3 0.15 3.2E-06 52.2 10.9 51 283-333 149-201 (343)
472 PRK13638 cbiO cobalt transport 95.3 0.24 5.3E-06 48.9 12.2 50 284-333 146-196 (271)
473 cd03280 ABC_MutS2 MutS2 homolo 95.3 0.012 2.5E-07 55.5 2.6 21 198-218 29-49 (200)
474 PRK11300 livG leucine/isoleuci 95.3 0.18 3.9E-06 49.4 11.2 52 282-333 161-214 (255)
475 PRK13647 cbiO cobalt transport 95.3 0.21 4.5E-06 49.5 11.7 52 282-333 146-198 (274)
476 PRK06002 fliI flagellum-specif 95.3 0.068 1.5E-06 55.9 8.4 24 196-219 164-187 (450)
477 PRK14265 phosphate ABC transpo 95.3 0.23 5E-06 49.2 12.0 50 284-333 171-220 (274)
478 PRK14245 phosphate ABC transpo 95.3 0.21 4.6E-06 48.7 11.6 50 284-333 156-205 (250)
479 PRK14236 phosphate transporter 95.3 0.23 4.9E-06 49.2 11.9 51 283-333 177-227 (272)
480 TIGR00958 3a01208 Conjugate Tr 95.3 0.19 4.2E-06 57.0 12.8 25 196-220 506-530 (711)
481 PRK09270 nucleoside triphospha 95.3 0.095 2.1E-06 50.4 8.9 25 195-219 31-55 (229)
482 PRK14249 phosphate ABC transpo 95.2 0.3 6.5E-06 47.7 12.6 50 284-333 157-206 (251)
483 cd02028 UMPK_like Uridine mono 95.2 0.033 7.1E-07 51.3 5.4 22 199-220 1-22 (179)
484 COG0529 CysC Adenylylsulfate k 95.2 0.059 1.3E-06 48.2 6.6 25 196-220 22-46 (197)
485 cd00984 DnaB_C DnaB helicase C 95.2 0.086 1.9E-06 51.1 8.7 43 196-239 12-54 (242)
486 PRK14242 phosphate transporter 95.2 0.26 5.6E-06 48.2 12.1 50 284-333 159-208 (253)
487 PRK13548 hmuV hemin importer A 95.2 0.25 5.5E-06 48.4 12.0 24 197-220 28-51 (258)
488 PF00625 Guanylate_kin: Guanyl 95.2 0.019 4.2E-07 53.1 3.8 37 197-235 2-38 (183)
489 PRK09580 sufC cysteine desulfu 95.2 0.28 6E-06 47.8 12.2 24 197-220 27-50 (248)
490 COG1120 FepC ABC-type cobalami 95.2 0.16 3.6E-06 49.0 10.1 138 196-333 27-199 (258)
491 TIGR02858 spore_III_AA stage I 95.2 0.18 3.9E-06 49.5 10.6 25 196-220 110-134 (270)
492 TIGR02142 modC_ABC molybdenum 95.2 0.23 4.9E-06 51.2 12.0 24 197-220 23-46 (354)
493 cd03236 ABC_RNaseL_inhibitor_d 95.2 0.25 5.3E-06 48.3 11.6 25 196-220 25-49 (255)
494 PF07726 AAA_3: ATPase family 95.2 0.0089 1.9E-07 50.8 1.2 27 200-228 2-28 (131)
495 PRK15112 antimicrobial peptide 95.2 0.22 4.9E-06 49.1 11.4 24 197-220 39-62 (267)
496 PRK14274 phosphate ABC transpo 95.1 0.22 4.7E-06 48.9 11.3 51 283-333 164-214 (259)
497 PRK13536 nodulation factor exp 95.1 0.25 5.4E-06 50.5 12.0 50 284-333 182-232 (340)
498 PRK15424 propionate catabolism 95.1 0.059 1.3E-06 58.2 7.7 47 166-220 219-265 (538)
499 PF03193 DUF258: Protein of un 95.1 0.036 7.8E-07 49.5 5.1 35 173-220 24-58 (161)
500 PRK14721 flhF flagellar biosyn 95.1 0.25 5.3E-06 51.6 12.0 24 196-219 190-213 (420)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5e-68 Score=588.24 Aligned_cols=526 Identities=25% Similarity=0.412 Sum_probs=417.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHHHHHHHhhhhhhhhHHHH
Q 041007 6 TVSTVLDQLSSITQQMNGARLLVGGVVTDVEKLRSHLEAIREVLDDAEKRQVKDVKDKAVEDWLRELTDTCYAVDDALDE 85 (597)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~~~Wl~~l~~~ayd~ed~ld~ 85 (597)
.++..++++.++ +.++...+.|.++.+..|++.|..+++++.++++++. ....+..|.+.+++++|+++|.++.
T Consensus 4 ~~s~~~~~~~~~---l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~---~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 4 CVSFGVEKLDQL---LNRESECLDGKDNYILELKENLKALQSALEDLDAKRD---DLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred EEEEehhhHHHH---HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788886 7888889999999999999999999999999999887 6778899999999999999999999
Q ss_pred HHHHHHHHHhhcccc---cccCceeeccccchhhhhhhHHHHHHHHHHHHHHHHccccccCccc----cCC-CCCCCccc
Q 041007 86 WNTAIQKLLLANETD---HKASKVRSFTCHLRIALRFDIGCKLKNLSRRVDAIAGKKDGFVIKL----MSG-SGEGGIMT 157 (597)
Q Consensus 86 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~i~~l~~~l~~i~~~~~~~~~~~----~~~-~~~~~~~~ 157 (597)
|.......+...... ...+.. |.. ..++..+..+..+.+++-.+......+.... ... ..+.....
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~----c~~--~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e 151 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRL----CLC--GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVE 151 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHH----hhh--hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcc
Confidence 987765543321110 011111 111 3444555555555555555544444443222 111 11111122
Q ss_pred CCccccCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChh-hhccCCeeEEEEec
Q 041007 158 TSSAVIDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSD-VKANFDKRIWVSAS 236 (597)
Q Consensus 158 ~~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~~~ 236 (597)
+.+ ..+... ||.+..++++...|..++ ..+++|+||||+||||||++++|+.. ++.+|+.++||.+|
T Consensus 152 ~~~-~~~~~~-VG~e~~~~kl~~~L~~d~----------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VS 219 (889)
T KOG4658|consen 152 TRP-IQSESD-VGLETMLEKLWNRLMEDD----------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVS 219 (889)
T ss_pred cCC-CCcccc-ccHHHHHHHHHHHhccCC----------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEc
Confidence 222 333344 999999999999999543 38999999999999999999999977 99999999999999
Q ss_pred CCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc--hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHH
Q 041007 237 YPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS--QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLM 314 (597)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~ 314 (597)
+.++. ..++.+|+..++..... ..+.+.+...|.+.|+++||||||||||... .|+.+.
T Consensus 220 k~f~~----------------~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~---dw~~I~ 280 (889)
T KOG4658|consen 220 KEFTT----------------RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV---DWDKIG 280 (889)
T ss_pred ccccH----------------HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc---cHHhcC
Confidence 99999 99999999998874433 2334788999999999999999999999888 799999
Q ss_pred HhhcCCCCCcEEEEEccCCCCCCCcccccccccCcccc-ce----eecCCCChHHHHHHHHHHhccCCCCCCccchHHHH
Q 041007 315 YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-ME----IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIG 389 (597)
Q Consensus 315 ~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~ 389 (597)
.++|...+||+|++|||+. .++.. ++ +++..|+++|||.||++.++.... ..++.++++|
T Consensus 281 ~~~p~~~~g~KvvlTTRs~--------------~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~la 345 (889)
T KOG4658|consen 281 VPFPSRENGSKVVLTTRSE--------------EVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELA 345 (889)
T ss_pred CCCCCccCCeEEEEEeccH--------------hhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHH
Confidence 9999999999999999999 77766 33 999999999999999999986533 3334589999
Q ss_pred HHHHHhcCCchHHHHHHHhhhccCCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHHHHHhhcC
Q 041007 390 RRVVGKCKGLPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKCFLYCSIF 469 (597)
Q Consensus 390 ~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~ls~F 469 (597)
++|+++|+|+|||++++|+.|+.+.+.++|.++++...+...... .+....++++|.+||++||+++|.||+|||+|
T Consensus 346 k~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~---~~~~~~i~~iLklSyd~L~~~lK~CFLycalF 422 (889)
T KOG4658|consen 346 KEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF---SGMEESILPILKLSYDNLPEELKSCFLYCALF 422 (889)
T ss_pred HHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC---CchhhhhHHhhhccHhhhhHHHHHHHHhhccC
Confidence 999999999999999999999999999999999998766533332 23367889999999999999999999999999
Q ss_pred CCCcccChhHHHHHHHHcCCccc-CCCCCHHHHHHHHHHHHhhCCCcccccccCCCCeeeEEEeChHHHHHHHHhhc---
Q 041007 470 PKNYEIEKDRLIKLWMAQGYLKS-QESKDMELVGEEYFGNLSSRSLFQDFQKSEFDGRIIRCQMHPIVHEFAQLLSK--- 545 (597)
Q Consensus 470 p~~~~i~~~~Li~~W~aeg~i~~-~~~~~~e~~~~~~l~~Lv~rsli~~~~~~~~~~~~~~~~mH~lv~~~a~~~~~--- 545 (597)
|+||.|+++.||.+|+||||+.+ ..+.+++++|+.|+.+|+++||++..... ++..+|+|||+||++|.++++
T Consensus 423 PED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~---~~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 423 PEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE---GRKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred CcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc---cceeEEEeeHHHHHHHHHHhcccc
Confidence 99999999999999999999998 45778999999999999999999876543 346789999999999999999
Q ss_pred --cccEEEeecCCcccccccCCCCCeEEEEEEecCCCCCCccccCCCCCccccC
Q 041007 546 --SHNFNAEVKGSDQECQSKSSHEKFRHLMIMFETDHGAFPNSVYNQKKLRSLV 597 (597)
Q Consensus 546 --~~~~~~~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~lr~l~ 597 (597)
.+++++..+......+....+..+||+|++++.. +......++++|+||+
T Consensus 500 ~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~--~~~~~~~~~~~L~tLl 551 (889)
T KOG4658|consen 500 KQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI--EHIAGSSENPKLRTLL 551 (889)
T ss_pred ccccceEEECCcCccccccccchhheeEEEEeccch--hhccCCCCCCccceEE
Confidence 7776666542221334455668899999998764 2333335567888874
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.7e-45 Score=365.91 Aligned_cols=277 Identities=38% Similarity=0.581 Sum_probs=219.2
Q ss_pred chhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhh
Q 041007 171 RNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEIS 250 (597)
Q Consensus 171 R~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~ 250 (597)
||.++++|.+.|.... .+.++|+|+|+||+||||||.+++++..++.+|+.++|+.++...+.
T Consensus 1 re~~~~~l~~~L~~~~--------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~--------- 63 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS--------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL--------- 63 (287)
T ss_dssp -HHHHHHHHHHHHTTT--------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC---------
T ss_pred CHHHHHHHHHHhhCCC--------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc---------
Confidence 7899999999999643 26899999999999999999999997668999999999999998888
Q ss_pred hcccchHHHHHHHHHHhccCCCC---chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEE
Q 041007 251 VARDRDEIRVAKAILESLKGSVS---SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRIL 327 (597)
Q Consensus 251 ~~~~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~II 327 (597)
..++..|+..++.... ...+.+.....+.+.|.++++||||||||+.. .|+.+...++....|++||
T Consensus 64 -------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~kil 133 (287)
T PF00931_consen 64 -------EQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE---DLEELREPLPSFSSGSKIL 133 (287)
T ss_dssp -------HHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH---HH-------HCHHSS-EEE
T ss_pred -------ccccccccccccccccccccccccccccccchhhhccccceeeeeeecccc---ccccccccccccccccccc
Confidence 8899999999988743 45667779999999999999999999998665 8888888888878899999
Q ss_pred EEccCCCCCCCcccccccccCcccc-----ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHH
Q 041007 328 VTRSGGKNGTNMTEIGLGEKNGTNM-----MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFA 402 (597)
Q Consensus 328 vTtR~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 402 (597)
||||+. .++.. ..+++++|+.+++++||.+.++... ...++...+.+++|+++|+|+|||
T Consensus 134 vTTR~~--------------~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLa 198 (287)
T PF00931_consen 134 VTTRDR--------------SVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLA 198 (287)
T ss_dssp EEESCG--------------GGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHH
T ss_pred cccccc--------------ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 999998 54432 2399999999999999999987544 223345567889999999999999
Q ss_pred HHHHHhhhccCCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHHHHHhhcCCCCcccChhHHHH
Q 041007 403 VKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKCFLYCSIFPKNYEIEKDRLIK 482 (597)
Q Consensus 403 i~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~ 482 (597)
|+++|++|+.+.+..+|..+++...+..... .+....+..++.+||+.||+++|+||+|||+||+++.|+++.|++
T Consensus 199 l~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~----~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~ 274 (287)
T PF00931_consen 199 LKLIASYLRSKSTVDEWEEALEELENSLRES----RDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIR 274 (287)
T ss_dssp HHHHHHHHHHHHSSSSHHHHHHHHHHCHTCS----SGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHH
T ss_pred ccccccccccccccccccccccccccccccc----ccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHH
Confidence 9999999976667788999887755443221 112567889999999999999999999999999999999999999
Q ss_pred HHHHcCCcccC
Q 041007 483 LWMAQGYLKSQ 493 (597)
Q Consensus 483 ~W~aeg~i~~~ 493 (597)
+|++||||...
T Consensus 275 lW~~e~~i~~~ 285 (287)
T PF00931_consen 275 LWVAEGFISSK 285 (287)
T ss_dssp HHTT-HHTC--
T ss_pred HHHHCCCCccc
Confidence 99999998753
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-39 Score=377.85 Aligned_cols=369 Identities=21% Similarity=0.268 Sum_probs=258.1
Q ss_pred cCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 163 IDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 163 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
.+...+|||+.+++++..+|.... ..+++|+|+||||+||||||+.+|+ ++..+|+..+|+.........
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~--------~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLES--------EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred cccccccchHHHHHHHHHHHcccc--------CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccch
Confidence 345679999999999999986443 3689999999999999999999999 688899998887521000000
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCC
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSE 322 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~ 322 (597)
...... ..........+...++..+......... ....+++.+.++|+||||||||+.. .|+.+.......++
T Consensus 251 ~~~~~~-~~~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~krvLLVLDdv~~~~---~l~~L~~~~~~~~~ 323 (1153)
T PLN03210 251 EIYSSA-NPDDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKHRKVLIFIDDLDDQD---VLDALAGQTQWFGS 323 (1153)
T ss_pred hhcccc-cccccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhCCeEEEEEeCCCCHH---HHHHHHhhCccCCC
Confidence 000000 0000000123334444443322111100 0145677789999999999998655 88888876666788
Q ss_pred CcEEEEEccCCCCCCCcccccccccCccccc----eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCC
Q 041007 323 GSRILVTRSGGKNGTNMTEIGLGEKNGTNMM----EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKG 398 (597)
Q Consensus 323 gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~----~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G 398 (597)
|++||||||+. .++... .|++..|++++|++||+++||... .++.++.+++++|+++|+|
T Consensus 324 GsrIIiTTrd~--------------~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 324 GSRIIVITKDK--------------HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGN 387 (1153)
T ss_pred CcEEEEEeCcH--------------HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCC
Confidence 99999999998 554332 399999999999999999998653 3445688999999999999
Q ss_pred chHHHHHHHhhhccCCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCCh-hHhHHHHHhhcCCCCcccCh
Q 041007 399 LPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSP-ALKKCFLYCSIFPKNYEIEK 477 (597)
Q Consensus 399 lPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cf~~ls~Fp~~~~i~~ 477 (597)
+||||+++|+.|+.+ +..+|..++.++.... ..++..+|++||+.|++ ..|.||+++|+|+.+..++
T Consensus 388 LPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~----------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~- 455 (1153)
T PLN03210 388 LPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL----------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN- 455 (1153)
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc----------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH-
Confidence 999999999999865 6899999998865433 34688999999999987 5999999999999986553
Q ss_pred hHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhCCCcccccccCCCCeeeEEEeChHHHHHHHHhhcccc-------EE
Q 041007 478 DRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQKSEFDGRIIRCQMHPIVHEFAQLLSKSHN-------FN 550 (597)
Q Consensus 478 ~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~~~~~~~~~~~~mH~lv~~~a~~~~~~~~-------~~ 550 (597)
.+..|++.+... ++..++.|+++|||+... + +++|||++|+|++.+++.+. +.
T Consensus 456 --~v~~~l~~~~~~----------~~~~l~~L~~ksLi~~~~----~----~~~MHdLl~~~~r~i~~~~~~~~~~r~~l 515 (1153)
T PLN03210 456 --DIKLLLANSDLD----------VNIGLKNLVDKSLIHVRE----D----IVEMHSLLQEMGKEIVRAQSNEPGEREFL 515 (1153)
T ss_pred --HHHHHHHhcCCC----------chhChHHHHhcCCEEEcC----C----eEEhhhHHHHHHHHHHHhhcCCCCcceeE
Confidence 467788876532 233489999999997532 1 38999999999999986653 22
Q ss_pred EeecCCcccccccCCCCCeEEEEEEecCCCC--CCccccCCCCCcccc
Q 041007 551 AEVKGSDQECQSKSSHEKFRHLMIMFETDHG--AFPNSVYNQKKLRSL 596 (597)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~--~~~~~~~~~~~lr~l 596 (597)
....+............+++++++..+.... -....+.+|++||+|
T Consensus 516 ~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L 563 (1153)
T PLN03210 516 VDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL 563 (1153)
T ss_pred eCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEE
Confidence 2211111011123455678998887544311 112345566666654
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.69 E-value=3.8e-15 Score=173.54 Aligned_cols=299 Identities=16% Similarity=0.200 Sum_probs=179.5
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRV 244 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 244 (597)
+..+|-|+.-++.| ... ...+++.|+|++|.||||++.++.+. ++.++|+++....+..
T Consensus 13 ~~~~~~R~rl~~~l----~~~---------~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~-- 71 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA---------NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQP-- 71 (903)
T ss_pred ccccCcchHHHHHH----hcc---------cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCH--
Confidence 34567776554444 321 24789999999999999999998862 2268999987554332
Q ss_pred hhhhhhhcccchHHHHHHHHHHhccCCCC-------------chhhHHHHHHHHHHHhc--CceEEEEEecccCCCCcch
Q 041007 245 ARDEISVARDRDEIRVAKAILESLKGSVS-------------SQVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAYPRY 309 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~-------------~~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~~~~ 309 (597)
..++..++..+..... ...+...+...+...+. +.+++|||||+++.+....
T Consensus 72 -------------~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~ 138 (903)
T PRK04841 72 -------------ERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEI 138 (903)
T ss_pred -------------HHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHH
Confidence 3333344444321100 00122233333333333 6799999999998874433
Q ss_pred HHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccceeecC----CCChHHHHHHHHHHhccCCCCCCccch
Q 041007 310 WEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLG----ELSEEECRSLFRQIAFHGRSSDYREKF 385 (597)
Q Consensus 310 ~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~----~Ls~~es~~Lf~~~~~~~~~~~~~~~~ 385 (597)
.+.+...+.....+.++|||||..+.... ... ..... ...+. +|+.+|+.+||....+... .
T Consensus 139 ~~~l~~l~~~~~~~~~lv~~sR~~~~~~~-~~l-----~~~~~-~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~ 204 (903)
T PRK04841 139 HEAMRFFLRHQPENLTLVVLSRNLPPLGI-ANL-----RVRDQ-LLEIGSQQLAFDHQEAQQFFDQRLSSPI-------E 204 (903)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCCCCCch-HhH-----HhcCc-ceecCHHhCCCCHHHHHHHHHhccCCCC-------C
Confidence 44555555556778899999998532210 000 00111 13344 9999999999987653211 1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhhhccCCC-HHHHHHHHhhhcccCChhhhhhcCCCCCcccchh-ccccCCChhHhHHH
Q 041007 386 EPIGRRVVGKCKGLPFAVKILGSLLRFKTS-IKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLL-LSYFDLSPALKKCF 463 (597)
Q Consensus 386 ~~~~~~I~~~~~GlPLai~~~~~~l~~~~~-~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~k~cf 463 (597)
.+.+..|.+.|+|+|+++..++..++.... .......+. ... ...+...|. ..|+.||+..+..+
T Consensus 205 ~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~----~~~---------~~~~~~~l~~~v~~~l~~~~~~~l 271 (903)
T PRK04841 205 AAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLA----GIN---------ASHLSDYLVEEVLDNVDLETRHFL 271 (903)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhc----CCC---------chhHHHHHHHHHHhcCCHHHHHHH
Confidence 455789999999999999999877754332 111110000 000 112223322 23789999999999
Q ss_pred HHhhcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhCCCcccccccCCCCeeeEEEeChHHHHHHHHh
Q 041007 464 LYCSIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQKSEFDGRIIRCQMHPIVHEFAQLL 543 (597)
Q Consensus 464 ~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~~~~~~~~~~~~mH~lv~~~a~~~ 543 (597)
..+|+++. ++.+ +.. .+.. .+.+...+++|.+.++|.....+ .+ .+|+.|++++++++..
T Consensus 272 ~~~a~~~~---~~~~-l~~-----~l~~-------~~~~~~~L~~l~~~~l~~~~~~~-~~---~~yr~H~L~r~~l~~~ 331 (903)
T PRK04841 272 LRCSVLRS---MNDA-LIV-----RVTG-------EENGQMRLEELERQGLFIQRMDD-SG---EWFRYHPLFASFLRHR 331 (903)
T ss_pred HHhccccc---CCHH-HHH-----HHcC-------CCcHHHHHHHHHHCCCeeEeecC-CC---CEEehhHHHHHHHHHH
Confidence 99999973 4433 222 1111 12357889999999997532211 11 2588999999999876
Q ss_pred h
Q 041007 544 S 544 (597)
Q Consensus 544 ~ 544 (597)
.
T Consensus 332 l 332 (903)
T PRK04841 332 C 332 (903)
T ss_pred H
Confidence 4
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.58 E-value=5.2e-13 Score=142.59 Aligned_cols=303 Identities=19% Similarity=0.215 Sum_probs=195.1
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRV 244 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 244 (597)
+.+.|-|.. |.+.|... ...+.+.|..|+|.|||||+.++.. + ...-..+.|.++.+..+..
T Consensus 18 ~~~~v~R~r----L~~~L~~~---------~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp-- 79 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRA---------NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDP-- 79 (894)
T ss_pred cccccccHH----HHHHHhcC---------CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCH--
Confidence 455666654 44445432 3589999999999999999999975 1 1223458999998766542
Q ss_pred hhhhhhhcccchHHHHHHHHHHhccCCCC-------------chhhHHHHHHHHHHHhc--CceEEEEEecccCCCCcch
Q 041007 245 ARDEISVARDRDEIRVAKAILESLKGSVS-------------SQVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAYPRY 309 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~-------------~~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~~~~ 309 (597)
..+...++..++.-.+ ...+...+.+.+...+. .++..|||||.+-..++.-
T Consensus 80 -------------~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l 146 (894)
T COG2909 80 -------------ARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPAL 146 (894)
T ss_pred -------------HHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccH
Confidence 5555555555543221 12234445555555444 5689999999877665555
Q ss_pred HHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc---eeecCCCChHHHHHHHHHHhccCCCCCCccchH
Q 041007 310 WEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM---EIGLGELSEEECRSLFRQIAFHGRSSDYREKFE 386 (597)
Q Consensus 310 ~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~---~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~ 386 (597)
-..+...+...+.+..+|||||+.+...-. ...+.+.. +-+.-.|+.+|+.+||.......- ..
T Consensus 147 ~~~l~fLl~~~P~~l~lvv~SR~rP~l~la------~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L-------d~ 213 (894)
T COG2909 147 HEALRFLLKHAPENLTLVVTSRSRPQLGLA------RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL-------DA 213 (894)
T ss_pred HHHHHHHHHhCCCCeEEEEEeccCCCCccc------ceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC-------Ch
Confidence 566666677788999999999998432110 00111110 133346899999999987752111 13
Q ss_pred HHHHHHHHhcCCchHHHHHHHhhhccCCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHHHHHh
Q 041007 387 PIGRRVVGKCKGLPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKCFLYC 466 (597)
Q Consensus 387 ~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~l 466 (597)
..++.|++.++|.+-|+..++=.++.+.+.+.-...+.-....+.+ -...--++.||+++|..++-|
T Consensus 214 ~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~d-------------YL~eeVld~Lp~~l~~FLl~~ 280 (894)
T COG2909 214 ADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSD-------------YLVEEVLDRLPPELRDFLLQT 280 (894)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHH-------------HHHHHHHhcCCHHHHHHHHHH
Confidence 4578999999999999999998887444444433333211000000 012234679999999999999
Q ss_pred hcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhCCCcc-cccccCCCCeeeEEEeChHHHHHHHHhhc
Q 041007 467 SIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQ-DFQKSEFDGRIIRCQMHPIVHEFAQLLSK 545 (597)
Q Consensus 467 s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~-~~~~~~~~~~~~~~~mH~lv~~~a~~~~~ 545 (597)
|+++.- ...|+..-.. ++.+..++++|.+++||- +.+.. + .+|+.|.++.+|.+....
T Consensus 281 svl~~f----~~eL~~~Ltg------------~~ng~amLe~L~~~gLFl~~Ldd~--~---~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 281 SVLSRF----NDELCNALTG------------EENGQAMLEELERRGLFLQRLDDE--G---QWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HhHHHh----hHHHHHHHhc------------CCcHHHHHHHHHhCCCceeeecCC--C---ceeehhHHHHHHHHhhhc
Confidence 999763 2334443222 235778999999999884 43322 2 369999999999987644
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.52 E-value=6.4e-12 Score=131.97 Aligned_cols=333 Identities=13% Similarity=0.087 Sum_probs=182.0
Q ss_pred cCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 163 IDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 163 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
..|..|+||++++++|...|...-. +.....+.|+|++|+|||++++.++++.......-..+++++....+.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~- 99 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR- 99 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH-
Confidence 3567899999999999999864322 124567889999999999999999985332221233556666555444
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCC-CC-chhhHHHHHHHHHHHhc--CceEEEEEecccCCCC---cchHHHHHH
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGS-VS-SQVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAY---PRYWEQLMY 315 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~-~~-~~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~---~~~~~~l~~ 315 (597)
..++..++.++... .+ ...+.+.+...+.+.+. +++.+||||+++.... ...+..+..
T Consensus 100 ---------------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~ 164 (394)
T PRK00411 100 ---------------YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLR 164 (394)
T ss_pred ---------------HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHH
Confidence 67788888888652 21 22345566666777665 4578999999976431 122333333
Q ss_pred hhcCCC-CCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccCC--CCCCccchHHHHHHH
Q 041007 316 SLKSGS-EGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGR--SSDYREKFEPIGRRV 392 (597)
Q Consensus 316 ~l~~~~-~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~--~~~~~~~~~~~~~~I 392 (597)
.+.... .+..+|.++......... ..... .......+.+.|++.++..+++..++.... ....+..++.+++..
T Consensus 165 ~~~~~~~~~v~vI~i~~~~~~~~~l-~~~~~--s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~ 241 (394)
T PRK00411 165 AHEEYPGARIGVIGISSDLTFLYIL-DPRVK--SVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLT 241 (394)
T ss_pred hhhccCCCeEEEEEEECCcchhhhc-CHHHH--hcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHH
Confidence 222221 123355555443110000 00000 001112389999999999999998764221 111212222233333
Q ss_pred HHhcCCchHHHHHHHhhh--c--c-CC--CHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHHHHH
Q 041007 393 VGKCKGLPFAVKILGSLL--R--F-KT--SIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKCFLY 465 (597)
Q Consensus 393 ~~~~~GlPLai~~~~~~l--~--~-~~--~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~ 465 (597)
....|..+.|+.++-.+. . . .. +.++...++.... ...+.-.+..||.+.|..+..
T Consensus 242 ~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-----------------~~~~~~~~~~L~~~~k~~L~a 304 (394)
T PRK00411 242 AREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE-----------------IVHLSEVLRTLPLHEKLLLRA 304 (394)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-----------------HHHHHHHHhcCCHHHHHHHHH
Confidence 333466777877664322 1 1 11 4555555555421 112334578999998887776
Q ss_pred hhcCCC--CcccChhHHHHH--HHHcCCcccCCCCCHHHHHHHHHHHHhhCCCccccccc-CCCCeeeEEEeChHHHHHH
Q 041007 466 CSIFPK--NYEIEKDRLIKL--WMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQKS-EFDGRIIRCQMHPIVHEFA 540 (597)
Q Consensus 466 ls~Fp~--~~~i~~~~Li~~--W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~~-~~~~~~~~~~mH~lv~~~a 540 (597)
++..-+ ...+....+... .+++.+- ....+ ......|++.|...|||.....+ +..++.+.++++.---++.
T Consensus 305 i~~~~~~~~~~~~~~~i~~~y~~l~~~~~--~~~~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~~~~~~ 381 (394)
T PRK00411 305 IVRLLKKGGDEVTTGEVYEEYKELCEELG--YEPRT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYDPEDVL 381 (394)
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHcC--CCcCc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCCHHHHH
Confidence 653321 123555555432 2222110 00011 23456799999999999865321 2234455565544333333
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.41 E-value=7.7e-11 Score=122.50 Aligned_cols=311 Identities=13% Similarity=0.120 Sum_probs=170.8
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhh-ccC---CeeEEEEecCCC
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVK-ANF---DKRIWVSASYPR 239 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~~~~~~ 239 (597)
-|..|+||+.++++|...|..... +.....+.|+|++|+|||++++.+++..... ... -..+|+++....
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 456799999999999999874322 1245679999999999999999999842211 111 135677776555
Q ss_pred chhhhhhhhhhhcccchHHHHHHHHHHhcc---CCCC-chhhHHHHHHHHHHHhc--CceEEEEEecccCCCC--cchHH
Q 041007 240 DEIRVARDEISVARDRDEIRVAKAILESLK---GSVS-SQVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAY--PRYWE 311 (597)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~---~~~~-~~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~--~~~~~ 311 (597)
+. ..++..++.++. ...+ ...+..+....+.+.+. +++++||||+++.... .....
T Consensus 87 ~~----------------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~ 150 (365)
T TIGR02928 87 TL----------------YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLY 150 (365)
T ss_pred CH----------------HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHH
Confidence 54 677788888773 2211 11233444555555553 5689999999976621 11122
Q ss_pred HHHHhh-cCCC--CCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccC-CCCCCccchHH
Q 041007 312 QLMYSL-KSGS--EGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHG-RSSDYREKFEP 387 (597)
Q Consensus 312 ~l~~~l-~~~~--~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~-~~~~~~~~~~~ 387 (597)
.+.... .... .+..+|.++.... .......... .......+.+.|++.++..+++..++... ......++..+
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~-~~~~l~~~~~--s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~ 227 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLK-FRENLDPRVK--SSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIP 227 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcc-hHhhcCHHHh--ccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHH
Confidence 222211 1111 2334444443321 1000000000 00011228899999999999999887421 11122233344
Q ss_pred HHHHHHHhcCCchH-HHHHHHhhh----c-cC--CCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhH
Q 041007 388 IGRRVVGKCKGLPF-AVKILGSLL----R-FK--TSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPAL 459 (597)
Q Consensus 388 ~~~~I~~~~~GlPL-ai~~~~~~l----~-~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 459 (597)
.+..++..+.|.|- |+.++-... . .. -+.++...+++... ...+.-++..||.+.
T Consensus 228 ~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-----------------~~~~~~~i~~l~~~~ 290 (365)
T TIGR02928 228 LCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-----------------KDRLLELIRGLPTHS 290 (365)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-----------------HHHHHHHHHcCCHHH
Confidence 55667777778874 333322111 1 11 13444444444321 112334567899988
Q ss_pred hHHHHHhhcCC--CCcccChhHHHHHHH--HcCCcccCCCCCHHHHHHHHHHHHhhCCCccccc
Q 041007 460 KKCFLYCSIFP--KNYEIEKDRLIKLWM--AQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQ 519 (597)
Q Consensus 460 k~cf~~ls~Fp--~~~~i~~~~Li~~W~--aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~ 519 (597)
+..+..+...- ++..+....+...+- ++.+ .. ..-......++++.|...|||....
T Consensus 291 ~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 291 KLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-GV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 87776655321 333466666665332 1111 11 1122457788999999999998653
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=2.6e-10 Score=113.22 Aligned_cols=190 Identities=19% Similarity=0.198 Sum_probs=112.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
...+.|+|++|+|||||++.+++.... ..+ ..+|+. ....+. .+++..++..++.+.....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~----------------~~~l~~i~~~lG~~~~~~~ 103 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDA----------------EDLLRMVAADFGLETEGRD 103 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCH----------------HHHHHHHHHHcCCCCCCCC
Confidence 468999999999999999999985321 111 122332 222233 6677788888766533221
Q ss_pred h---HHHHHHHHHHHh-cCceEEEEEecccCCCCcchHHHHHHhhcCC---CCCcEEEEEccCCCCCC-CcccccccccC
Q 041007 277 E---METVLQYINEFV-QGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG---SEGSRILVTRSGGKNGT-NMTEIGLGEKN 348 (597)
Q Consensus 277 ~---~~~~~~~l~~~L-~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~---~~gs~IIvTtR~~~~~~-~~~~~~~~~~~ 348 (597)
. ...+...+.... .+++.+||+||+|+.+ ...++.+....... .....|++|........ ..... ..
T Consensus 104 ~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~-~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~----~~ 178 (269)
T TIGR03015 104 KAALLRELEDFLIEQFAAGKRALLVVDEAQNLT-PELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQL----QQ 178 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECcccCC-HHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchh----HH
Confidence 1 122333333322 5788999999998876 44566655332221 22334566654331000 00000 00
Q ss_pred ccc--cceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhh
Q 041007 349 GTN--MMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGSLL 410 (597)
Q Consensus 349 ~~~--~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 410 (597)
... ...+.+.+|+.+|..+++...+...+......-..+..+.|++.|+|.|..|+.++..+
T Consensus 179 l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 179 LRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 111 12288999999999999988774332211112235788999999999999999988776
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.29 E-value=1.2e-11 Score=119.90 Aligned_cols=218 Identities=20% Similarity=0.215 Sum_probs=101.2
Q ss_pred cccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhh
Q 041007 168 FHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARD 247 (597)
Q Consensus 168 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 247 (597)
|+||+.|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+. .+..-..++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~----------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG----------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp S-S-HHHHHHHHHCHHH------------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh----------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHH
Confidence 799999999999999743 3579999999999999999999883 3221113344433332221000000
Q ss_pred hhhhcccchHHHHHHHHHHhccCCC------CchhhHHHHHHHHHHHhc--CceEEEEEecccCCC-C----cchHHHHH
Q 041007 248 EISVARDRDEIRVAKAILESLKGSV------SSQVEMETVLQYINEFVQ--GKKVLLVLDDLWWNA-Y----PRYWEQLM 314 (597)
Q Consensus 248 ~~~~~~~~~~~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~-~----~~~~~~l~ 314 (597)
.. .......+...+...+.... ............+.+.+. +++++||+||++... . ......+.
T Consensus 69 -~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~ 145 (234)
T PF01637_consen 69 -IE--ETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLR 145 (234)
T ss_dssp -HH--HHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHH
T ss_pred -HH--HHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHH
Confidence 00 00000011111222221110 011122222222223332 345999999997654 1 12223344
Q ss_pred HhhcC---CCCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHH
Q 041007 315 YSLKS---GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRR 391 (597)
Q Consensus 315 ~~l~~---~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~ 391 (597)
..+.. ..+-+.|+++|..... .... ............+.++||+.+++++++...+... . .. +.-.+..++
T Consensus 146 ~~~~~~~~~~~~~~v~~~S~~~~~-~~~~--~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~ 219 (234)
T PF01637_consen 146 SLLDSLLSQQNVSIVITGSSDSLM-EEFL--DDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEE 219 (234)
T ss_dssp HHHHH----TTEEEEEEESSHHHH-HHTT---TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHH
T ss_pred HHHhhccccCCceEEEECCchHHH-HHhh--cccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHH
Confidence 43433 3333444444432100 0000 0000011122229999999999999999876432 1 11 122556699
Q ss_pred HHHhcCCchHHHHHH
Q 041007 392 VVGKCKGLPFAVKIL 406 (597)
Q Consensus 392 I~~~~~GlPLai~~~ 406 (597)
|+..+||+|..|..+
T Consensus 220 i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 220 IYSLTGGNPRYLQEL 234 (234)
T ss_dssp HHHHHTT-HHHHHHH
T ss_pred HHHHhCCCHHHHhcC
Confidence 999999999988653
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.28 E-value=1.2e-10 Score=117.85 Aligned_cols=264 Identities=16% Similarity=0.144 Sum_probs=139.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+|+|+++.+++|..++..... ....+..+.|+|++|+|||+||+.+++. ....+ ..+..+....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-----~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~----- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-----RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEK----- 68 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-----cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcC-----
Confidence 4699999999999998864321 0124567899999999999999999883 32222 1111110000
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhc-------
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLK------- 318 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~------- 318 (597)
...+...+..+ +...+|+||+++... ....+.+...+.
T Consensus 69 ------------~~~l~~~l~~~----------------------~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v 113 (305)
T TIGR00635 69 ------------PGDLAAILTNL----------------------EEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIV 113 (305)
T ss_pred ------------chhHHHHHHhc----------------------ccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeee
Confidence 11111111111 123355555554332 111111211111
Q ss_pred ------------CCCCCcEEEEEccCCCCCCCcccccccccCccccc--eeecCCCChHHHHHHHHHHhccCCCCCCccc
Q 041007 319 ------------SGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIAFHGRSSDYREK 384 (597)
Q Consensus 319 ------------~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~ 384 (597)
...+.+-|..||+...... .....+ .+.+.+++.++..+++.+.+...+.. -
T Consensus 114 ~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~----------~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~ 179 (305)
T TIGR00635 114 IGKGPSARSVRLDLPPFTLVGATTRAGMLTS----------PLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE----I 179 (305)
T ss_pred eccCccccceeecCCCeEEEEecCCccccCH----------HHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC----c
Confidence 1112344455555431100 111112 27899999999999999887533221 1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHhhhccCCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHHHH
Q 041007 385 FEPIGRRVVGKCKGLPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKCFL 464 (597)
Q Consensus 385 ~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~ 464 (597)
..+.+..|++.|+|.|-.+..++..+ |............... -......+...|..|+++.+..|.
T Consensus 180 ~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~~------v~~~l~~l~~~~~~l~~~~~~~L~ 245 (305)
T TIGR00635 180 EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRDI------ALKALEMLMIDELGLDEIDRKLLS 245 (305)
T ss_pred CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHHH------HHHHHHHhCCCCCCCCHHHHHHHH
Confidence 24567899999999997665444432 1110000000000000 001112245678889998887776
Q ss_pred -HhhcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHH-HHhhCCCccccc
Q 041007 465 -YCSIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFG-NLSSRSLFQDFQ 519 (597)
Q Consensus 465 -~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~-~Lv~rsli~~~~ 519 (597)
.+..|+.+ .+..+.+.... |- ....++..++ .|++++||....
T Consensus 246 al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 246 VLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred HHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcCCcccCC
Confidence 55777654 44444433321 11 2235677788 699999997443
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.28 E-value=2.2e-10 Score=116.72 Aligned_cols=265 Identities=18% Similarity=0.168 Sum_probs=144.4
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRV 244 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 244 (597)
-.+|+|++..++.+..++..... .+...+.+.|+|++|+|||+||+.+++. ....+ .++... ....
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-----~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~--- 89 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-----RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEK--- 89 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-----cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccC---
Confidence 35699999999999888864221 0124568899999999999999999984 33221 111111 0110
Q ss_pred hhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-----
Q 041007 245 ARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS----- 319 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~----- 319 (597)
...+..++..+ ++..+|+||+++... ....+.+...+..
T Consensus 90 -------------~~~l~~~l~~l----------------------~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~ 133 (328)
T PRK00080 90 -------------PGDLAAILTNL----------------------EEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDI 133 (328)
T ss_pred -------------hHHHHHHHHhc----------------------ccCCEEEEecHhhcc-hHHHHHHHHHHHhcceee
Confidence 11111222211 223466666665432 1111112111110
Q ss_pred --------------CCCCcEEEEEccCCCCCCCcccccccccCcccc--ceeecCCCChHHHHHHHHHHhccCCCCCCcc
Q 041007 320 --------------GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM--MEIGLGELSEEECRSLFRQIAFHGRSSDYRE 383 (597)
Q Consensus 320 --------------~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~ 383 (597)
..+.+-|..|++...... ...+. ..+.+.+++.++..+++...+...+..
T Consensus 134 ~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~----------~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~---- 199 (328)
T PRK00080 134 MIGKGPAARSIRLDLPPFTLIGATTRAGLLTS----------PLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE---- 199 (328)
T ss_pred eeccCccccceeecCCCceEEeecCCcccCCH----------HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----
Confidence 112334555555441100 11111 228899999999999999887543222
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHhhhccCCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHHH
Q 041007 384 KFEPIGRRVVGKCKGLPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKCF 463 (597)
Q Consensus 384 ~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf 463 (597)
-..+.+..|++.|+|.|-.+..+...+ ..|...... ....... -......+...+..|++..+..+
T Consensus 200 ~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--~~I~~~~------v~~~l~~~~~~~~~l~~~~~~~l 265 (328)
T PRK00080 200 IDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--GVITKEI------ADKALDMLGVDELGLDEMDRKYL 265 (328)
T ss_pred cCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC--CCCCHHH------HHHHHHHhCCCcCCCCHHHHHHH
Confidence 124578899999999996555444432 112111100 0010000 11122345667788998888877
Q ss_pred H-HhhcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHH-HHhhCCCccccc
Q 041007 464 L-YCSIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFG-NLSSRSLFQDFQ 519 (597)
Q Consensus 464 ~-~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~-~Lv~rsli~~~~ 519 (597)
. .+..|+.+ .+..+.+.... | ...+.+++.++ .|++.+||+...
T Consensus 266 ~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 266 RTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHcCCcccCC
Confidence 6 77778766 46665554332 1 12235566677 999999997543
No 12
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.26 E-value=1.1e-10 Score=131.81 Aligned_cols=333 Identities=18% Similarity=0.199 Sum_probs=189.4
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEec---C--CCch
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSAS---Y--PRDE 241 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~---~--~~~~ 241 (597)
.++||+.+++.|...+..... +...++.|.|.+|||||+|+++|.. .+.+.+...+--.+. . +...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~-------g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~ 71 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK-------GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSP 71 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC-------CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHH
Confidence 378999999999999986653 4567999999999999999999988 444432221111111 1 1111
Q ss_pred hh-hhhh---hhhhcccchHHHHHHHHHHhccCCCCc----------------------h---hh--HHHHHHHHHHHhc
Q 041007 242 IR-VARD---EISVARDRDEIRVAKAILESLKGSVSS----------------------Q---VE--METVLQYINEFVQ 290 (597)
Q Consensus 242 ~~-~~~~---~~~~~~~~~~~~~~~~il~~l~~~~~~----------------------~---~~--~~~~~~~l~~~L~ 290 (597)
.. .+++ .+..............++..++..... . .+ .......+.....
T Consensus 72 lvq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~ 151 (849)
T COG3899 72 LVQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTA 151 (849)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHh
Confidence 11 1111 111222333344444455544432110 0 00 0113344444444
Q ss_pred -CceEEEEEecccCCCCcchHHHHHHhhcCCC----CCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHH
Q 041007 291 -GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGS----EGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEEC 365 (597)
Q Consensus 291 -~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~----~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es 365 (597)
.++.++|+||++|.| ..+.+-+........ ....|..+.......... .........|.|.||+..+.
T Consensus 152 ~~~plVi~leDlhWaD-~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~------~~~~~~i~~I~L~PL~~~d~ 224 (849)
T COG3899 152 EEHPLVIVLEDLHWAD-SASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEI------LKSATNITTITLAPLSRADT 224 (849)
T ss_pred ccCCeEEEEecccccC-hhHHHHHHHHHHhcchhhhhccccccCCCccchhhHH------hhcCCceeEEecCcCchhhH
Confidence 459999999999998 555555544433222 011222222221100000 00112223399999999999
Q ss_pred HHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhhccC------CCHHHHHHHHhhhcccCChhhhhhcC
Q 041007 366 RSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGSLLRFK------TSIKEWQSVLDSEIWNLDSEICKRAG 439 (597)
Q Consensus 366 ~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~ 439 (597)
..+......... ....+..+.|+++..|+|+.+..+-..+..+ .+...|..-.... ...+
T Consensus 225 ~~lV~~~l~~~~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i---------~~~~ 290 (849)
T COG3899 225 NQLVAATLGCTK-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL---------GILA 290 (849)
T ss_pred HHHHHHHhCCcc-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc---------CCch
Confidence 999998874322 2235678999999999999999998888653 2334444322211 1111
Q ss_pred CCCCcccchhccccCCChhHhHHHHHhhcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhCCCccccc
Q 041007 440 VGYECLSPLLLSYFDLSPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQ 519 (597)
Q Consensus 440 ~~~~~~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~ 519 (597)
..+++...+..-.+.||...|+.+-..|++... |+.+.|...|-. .....+....+.|....++-..+
T Consensus 291 ~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~ 358 (849)
T COG3899 291 TTDAVVEFLAARLQKLPGTTREVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSE 358 (849)
T ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceecccc
Confidence 122344457778999999999999999999765 566666666532 34456666666666655554322
Q ss_pred ccCCCCeeeE--E-EeChHHHHHHH
Q 041007 520 KSEFDGRIIR--C-QMHPIVHEFAQ 541 (597)
Q Consensus 520 ~~~~~~~~~~--~-~mH~lv~~~a~ 541 (597)
....+..+.. | -.|+.|++.|-
T Consensus 359 ~yr~~~~~~~~~Y~F~H~~vqqaaY 383 (849)
T COG3899 359 TYRFGSNVDIATYKFLHDRVQQAAY 383 (849)
T ss_pred ccccccccchhhHHhhHHHHHHHHh
Confidence 2222111111 2 35777777663
No 13
>PF05729 NACHT: NACHT domain
Probab=99.06 E-value=1.5e-09 Score=99.20 Aligned_cols=150 Identities=22% Similarity=0.284 Sum_probs=85.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhcc----CCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKAN----FDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS 273 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 273 (597)
+++.|+|.+|+||||+++.++........ +...+|++.......... ..+...+.........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~l~~~~~~~~~ 67 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-------------RSLADLLFDQLPESIA 67 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-------------chHHHHHHHhhccchh
Confidence 58999999999999999999875332222 345667766554332000 1233333333322211
Q ss_pred chhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcc------hHHHHHH-hhcC-CCCCcEEEEEccCCCCCCCcccccc
Q 041007 274 SQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPR------YWEQLMY-SLKS-GSEGSRILVTRSGGKNGTNMTEIGL 344 (597)
Q Consensus 274 ~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~------~~~~l~~-~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~ 344 (597)
.. .. .+... ...++++||||+++...... .+..+.. .+.. ..+++++|||+|........
T Consensus 68 ~~---~~---~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~----- 136 (166)
T PF05729_consen 68 PI---EE---LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLR----- 136 (166)
T ss_pred hh---HH---HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHH-----
Confidence 11 11 12122 24789999999996544211 1233333 3333 36789999999987210000
Q ss_pred cccCccccceeecCCCChHHHHHHHHHHh
Q 041007 345 GEKNGTNMMEIGLGELSEEECRSLFRQIA 373 (597)
Q Consensus 345 ~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~ 373 (597)
........+.+.+|++++..+++.+..
T Consensus 137 --~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 137 --RRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred --HhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 011112238999999999999998765
No 14
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.03 E-value=4.5e-08 Score=106.24 Aligned_cols=308 Identities=10% Similarity=0.069 Sum_probs=161.5
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhh---hccCC--eeEEEEecCCC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDV---KANFD--KRIWVSASYPR 239 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~~~~~~ 239 (597)
|..+.|||+|+++|...|...-.. .+...++.|+|++|.|||++++.|.+.... +...+ .+++|.+....
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-----sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-----SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-----CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 567899999999999998754321 123357789999999999999999874321 11222 25667765544
Q ss_pred chhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc-hhhHHHHHHHHHHHhc---CceEEEEEecccCCCCcchHHHHHH
Q 041007 240 DEIRVARDEISVARDRDEIRVAKAILESLKGSVSS-QVEMETVLQYINEFVQ---GKKVLLVLDDLWWNAYPRYWEQLMY 315 (597)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~L~---~kr~LLVLDdv~~~~~~~~~~~l~~ 315 (597)
.. ..++..|..++....+. ..........+...+. ....+||||+++..... .-+.|..
T Consensus 829 tp----------------~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-~QDVLYn 891 (1164)
T PTZ00112 829 HP----------------NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-TQKVLFT 891 (1164)
T ss_pred CH----------------HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-HHHHHHH
Confidence 44 66777777777543322 2222334444444432 23468999999755421 1122333
Q ss_pred hhcC-CCCCcEEEE--EccCCCCCCCcccccccccCccccc---eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHH
Q 041007 316 SLKS-GSEGSRILV--TRSGGKNGTNMTEIGLGEKNGTNMM---EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIG 389 (597)
Q Consensus 316 ~l~~-~~~gs~IIv--TtR~~~~~~~~~~~~~~~~~~~~~~---~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~ 389 (597)
.+.. ...+++|+| ++... ..+....- .+...+ .+...|++.++..+++..++........+..++-+|
T Consensus 892 LFR~~~~s~SKLiLIGISNdl-DLperLdP-----RLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIA 965 (1164)
T PTZ00112 892 LFDWPTKINSKLVLIAISNTM-DLPERLIP-----RCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCA 965 (1164)
T ss_pred HHHHhhccCCeEEEEEecCch-hcchhhhh-----hhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3322 234455444 23211 11100000 111111 177899999999999999885432222223333344
Q ss_pred HHHHHhcCCchHHHHHHHhhhccCC----CHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHHHHH
Q 041007 390 RRVVGKCKGLPFAVKILGSLLRFKT----SIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKCFLY 465 (597)
Q Consensus 390 ~~I~~~~~GlPLai~~~~~~l~~~~----~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~ 465 (597)
+.++...|-.-.||.++-.+..... ..++-..+..... ...+.-....||.+.|-.|..
T Consensus 966 rkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE-----------------~srI~e~IktLPlHqKLVLlA 1028 (1164)
T PTZ00112 966 RKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLF-----------------DSPLTNAINYLPWPFKMFLTC 1028 (1164)
T ss_pred HhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHH-----------------hhhHHHHHHcCCHHHHHHHHH
Confidence 4444445556777766654442211 2233333322210 011223446889887776654
Q ss_pred hhcCCC---CcccChhHHHHHH--HHcCCcccCCCCCHHHHHHHHHHHHhhCCCccc
Q 041007 466 CSIFPK---NYEIEKDRLIKLW--MAQGYLKSQESKDMELVGEEYFGNLSSRSLFQD 517 (597)
Q Consensus 466 ls~Fp~---~~~i~~~~Li~~W--~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~ 517 (597)
+...-+ ...++...+.... +++..-..-+....-....+|+.+|...|+|..
T Consensus 1029 LIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1029 LIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred HHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCeEEe
Confidence 433211 2235555544322 222000000111111267889999999998864
No 15
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.98 E-value=6.4e-09 Score=102.95 Aligned_cols=177 Identities=17% Similarity=0.211 Sum_probs=103.3
Q ss_pred cCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 163 IDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 163 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
+...+++|.+..+.++++ .+.+....+|||+|+||||||+.+.. .....|. .++-..+.
T Consensus 27 vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~g- 85 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSG- 85 (436)
T ss_pred cChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----Eecccccc-
Confidence 334455555555554443 34678899999999999999999988 4555442 22222222
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHH-HHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCC
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYI-NEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGS 321 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~ 321 (597)
.. ++..+.+.- +....+++.+|++|.|+.-+ -.+.-..||...
T Consensus 86 ---------------vk-----------------dlr~i~e~a~~~~~~gr~tiLflDEIHRfn----K~QQD~lLp~vE 129 (436)
T COG2256 86 ---------------VK-----------------DLREIIEEARKNRLLGRRTILFLDEIHRFN----KAQQDALLPHVE 129 (436)
T ss_pred ---------------HH-----------------HHHHHHHHHHHHHhcCCceEEEEehhhhcC----hhhhhhhhhhhc
Confidence 22 222222222 22234889999999997665 223334556667
Q ss_pred CCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccCCCCCC--ccch-HHHHHHHHHhcCC
Q 041007 322 EGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGRSSDY--REKF-EPIGRRVVGKCKG 398 (597)
Q Consensus 322 ~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~--~~~~-~~~~~~I~~~~~G 398 (597)
+|..|+|-+..+.+.+....- -..+...+.++||+.++...++.+.+........ ...+ ++..+.|+..++|
T Consensus 130 ~G~iilIGATTENPsF~ln~A-----LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 130 NGTIILIGATTENPSFELNPA-----LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred CCeEEEEeccCCCCCeeecHH-----HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 788888755555333322211 1111222999999999999999984432211111 1112 4466778888888
Q ss_pred chH
Q 041007 399 LPF 401 (597)
Q Consensus 399 lPL 401 (597)
---
T Consensus 205 D~R 207 (436)
T COG2256 205 DAR 207 (436)
T ss_pred hHH
Confidence 653
No 16
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.88 E-value=6e-09 Score=97.08 Aligned_cols=47 Identities=30% Similarity=0.533 Sum_probs=32.6
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.|+||++++++|...|.... ....+.+.|+|++|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~-------~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ-------SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS-------S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH-------cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999996222 245799999999999999999999884
No 17
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=1.2e-07 Score=102.46 Aligned_cols=197 Identities=12% Similarity=0.153 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+.......+.. ..+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR---------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~-------- 75 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR---------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGV-------- 75 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcc--------
Confidence 468999999999999987432 2456689999999999999988773211111100 00000
Q ss_pred hhhhhhcccchHHHHHHHHHHh-----ccCCCCchhhHHHHHHHHHHH----hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILES-----LKGSVSSQVEMETVLQYINEF----VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~-----l~~~~~~~~~~~~~~~~l~~~----L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-.....|... +..........+++.+.+... ..++.-++|||+++..+ ...++.++..
T Consensus 76 ------------C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-~~A~NALLKt 142 (830)
T PRK07003 76 ------------CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-NHAFNAMLKT 142 (830)
T ss_pred ------------cHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-HHHHHHHHHH
Confidence 0000111000 000000011122222222211 12455689999998886 5678888888
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+..-..+.++|+||.+...... -+...|. +.+++++.++..+.+.+.+...+... ..+....|++.
T Consensus 143 LEEPP~~v~FILaTtd~~KIp~---------TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~ 209 (830)
T PRK07003 143 LEEPPPHVKFILATTDPQKIPV---------TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARA 209 (830)
T ss_pred HHhcCCCeEEEEEECChhhccc---------hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHH
Confidence 8777778888888877632111 1222222 99999999999999988775432211 24567889999
Q ss_pred cCCch-HHHHHHHh
Q 041007 396 CKGLP-FAVKILGS 408 (597)
Q Consensus 396 ~~GlP-Lai~~~~~ 408 (597)
++|.. -++.++-.
T Consensus 210 A~GsmRdALsLLdQ 223 (830)
T PRK07003 210 AQGSMRDALSLTDQ 223 (830)
T ss_pred cCCCHHHHHHHHHH
Confidence 98855 56665443
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.82 E-value=8.8e-08 Score=100.71 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=102.6
Q ss_pred CccccchhhHHH---HHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNAEKQK---ILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
.+|||++..+.. |..++.. .....+.|+|++|+||||||+.+++. ....| +.++.....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~----------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~- 73 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA----------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSG- 73 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc----------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEeccccc-
Confidence 468888877665 7777753 24567889999999999999999883 32222 222211111
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHhhcCCC
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGS 321 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~ 321 (597)
....+.++. ..... ..+++.+|+||+++... ....+.+...+.
T Consensus 74 ---------------~~~ir~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~-~~~q~~LL~~le--- 117 (413)
T PRK13342 74 ---------------VKDLREVIE-----------------EARQRRSAGRRTILFIDEIHRFN-KAQQDALLPHVE--- 117 (413)
T ss_pred ---------------HHHHHHHHH-----------------HHHHhhhcCCceEEEEechhhhC-HHHHHHHHHHhh---
Confidence 111112221 11111 13578899999998765 334455554443
Q ss_pred CCcEEEEE--ccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCC
Q 041007 322 EGSRILVT--RSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKG 398 (597)
Q Consensus 322 ~gs~IIvT--tR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G 398 (597)
.+..+++. |.+.. ..... .+... ..+.+.+++.++...++.+.+....... ..-..+....|++.|+|
T Consensus 118 ~~~iilI~att~n~~--~~l~~------aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~G 188 (413)
T PRK13342 118 DGTITLIGATTENPS--FEVNP------ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANG 188 (413)
T ss_pred cCcEEEEEeCCCChh--hhccH------HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCC
Confidence 24444443 33321 00000 11111 2289999999999999998653211100 01224567889999999
Q ss_pred chHHHHHHH
Q 041007 399 LPFAVKILG 407 (597)
Q Consensus 399 lPLai~~~~ 407 (597)
.|..+.-+.
T Consensus 189 d~R~aln~L 197 (413)
T PRK13342 189 DARRALNLL 197 (413)
T ss_pred CHHHHHHHH
Confidence 997664443
No 19
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=3.7e-08 Score=94.81 Aligned_cols=162 Identities=17% Similarity=0.207 Sum_probs=95.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
.+.+.|+|++|+|||+|++.+++. .......+.|+++.... .....
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~-------------------~~~~~------------- 84 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ-------------------YFSPA------------- 84 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh-------------------hhhHH-------------
Confidence 467899999999999999999984 43333455666643110 00001
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHH-HHHhhcCC-CCCcEEE-EEccCCCCCCCcccccccccCcccc-
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQ-LMYSLKSG-SEGSRIL-VTRSGGKNGTNMTEIGLGEKNGTNM- 352 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~-l~~~l~~~-~~gs~II-vTtR~~~~~~~~~~~~~~~~~~~~~- 352 (597)
+.+.+. +.-+|||||+|.......|+. +...+... ..|..+| +|+...+.......- .+...
T Consensus 85 --------~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~-----~L~sRl 150 (229)
T PRK06893 85 --------VLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLP-----DLASRL 150 (229)
T ss_pred --------HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccch-----hHHHHH
Confidence 111111 235999999987543446664 33334332 3455554 455443221111100 22221
Q ss_pred ---ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhh
Q 041007 353 ---MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGSLL 410 (597)
Q Consensus 353 ---~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 410 (597)
..+++.++++++.++++.+.+...+.. . -.+...-|++++.|..-.+..+-..+
T Consensus 151 ~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~-l---~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 151 TWGEIYQLNDLTDEQKIIVLQRNAYQRGIE-L---SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred hcCCeeeCCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 128999999999999999988643321 1 15677889999998777665554433
No 20
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.81 E-value=1.3e-08 Score=88.97 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=79.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhcc-----CCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKAN-----FDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKG 270 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 270 (597)
+.+++.|+|++|+|||+++..+.+. .... -..++|+.+....+. ..+...++..++.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~~~l~~ 64 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTP----------------RDFAQEILEALGL 64 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSH----------------HHHHHHHHHHHT-
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCH----------------HHHHHHHHHHhCc
Confidence 3578999999999999999999884 2221 345678888766665 8999999999988
Q ss_pred CCCchhhHHHHHHHHHHHhcCc-eEEEEEecccCC-CCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 271 SVSSQVEMETVLQYINEFVQGK-KVLLVLDDLWWN-AYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~L~~k-r~LLVLDdv~~~-~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
......+...+.+.+.+.+... ..+||||+++.. . ...++.+..... ..+..+|+..+..
T Consensus 65 ~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 65 PLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFS-DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHT-HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred cccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCC-HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 7666556666777777777754 459999999765 3 344444544333 6677777776644
No 21
>PF13173 AAA_14: AAA domain
Probab=98.79 E-value=2e-08 Score=87.36 Aligned_cols=125 Identities=23% Similarity=0.341 Sum_probs=78.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
.+++.|.|+.|+|||||+++++.+.. ....++++++...... .. .
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~----------------~~----------------~ 46 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDR----------------RL----------------A 46 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHH----------------HH----------------h
Confidence 36899999999999999999987422 3344666665432211 00 0
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-ee
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EI 355 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~ 355 (597)
+.+ +.+.+.+....++.+|+||+++... .|......+....++.+|++|+.+........ . ...++.. .+
T Consensus 47 ~~~-~~~~~~~~~~~~~~~i~iDEiq~~~---~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~----~-~~l~gr~~~~ 117 (128)
T PF13173_consen 47 DPD-LLEYFLELIKPGKKYIFIDEIQYLP---DWEDALKFLVDNGPNIKIILTGSSSSLLSKDI----A-ESLAGRVIEI 117 (128)
T ss_pred hhh-hHHHHHHhhccCCcEEEEehhhhhc---cHHHHHHHHHHhccCceEEEEccchHHHhhcc----c-ccCCCeEEEE
Confidence 000 2233333334478899999997766 78887777776667789999998773221100 0 0122222 28
Q ss_pred ecCCCChHHH
Q 041007 356 GLGELSEEEC 365 (597)
Q Consensus 356 ~l~~Ls~~es 365 (597)
++.||+..|.
T Consensus 118 ~l~Plsf~E~ 127 (128)
T PF13173_consen 118 ELYPLSFREF 127 (128)
T ss_pred EECCCCHHHh
Confidence 9999998773
No 22
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=8.5e-07 Score=94.81 Aligned_cols=196 Identities=11% Similarity=0.113 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc--CCeeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN--FDKRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~ 243 (597)
.++||.+.-++.|..++.... -...+.++|+.|+||||+|+.+.+...-... -.....-.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR---------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~------ 80 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR---------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ------ 80 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC---------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc------
Confidence 468999999999999998433 2456789999999999999999773111000 00000000000
Q ss_pred hhhhhhhhcccchHHHHHHHHHHh-----ccCCCCchhhHHHHHHHHHHH----hcCceEEEEEecccCCCCcchHHHHH
Q 041007 244 VARDEISVARDRDEIRVAKAILES-----LKGSVSSQVEMETVLQYINEF----VQGKKVLLVLDDLWWNAYPRYWEQLM 314 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~-----l~~~~~~~~~~~~~~~~l~~~----L~~kr~LLVLDdv~~~~~~~~~~~l~ 314 (597)
-.....|... +..........+++.+.+... ..++.-++|||+++..+ ...++.++
T Consensus 81 --------------C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-~~AaNALL 145 (700)
T PRK12323 81 --------------CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-NHAFNAML 145 (700)
T ss_pred --------------cHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-HHHHHHHH
Confidence 0000111000 000000111122222222221 13566799999998876 66778888
Q ss_pred HhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHH
Q 041007 315 YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVV 393 (597)
Q Consensus 315 ~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~ 393 (597)
..|..-..++++|++|.+...... -+...|. +.+.+++.++..+.+.+.+...+... ..+..+.|+
T Consensus 146 KTLEEPP~~v~FILaTtep~kLlp---------TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA 212 (700)
T PRK12323 146 KTLEEPPEHVKFILATTDPQKIPV---------TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLA 212 (700)
T ss_pred HhhccCCCCceEEEEeCChHhhhh---------HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence 877766667777766665421110 1112222 99999999999999887764322211 134568899
Q ss_pred HhcCCchHHHH
Q 041007 394 GKCKGLPFAVK 404 (597)
Q Consensus 394 ~~~~GlPLai~ 404 (597)
+.++|.|.-..
T Consensus 213 ~~A~Gs~RdAL 223 (700)
T PRK12323 213 QAAQGSMRDAL 223 (700)
T ss_pred HHcCCCHHHHH
Confidence 99999886443
No 23
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=1.7e-08 Score=100.71 Aligned_cols=299 Identities=18% Similarity=0.121 Sum_probs=181.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeE-EEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRI-WVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
..+.+.++|+|||||||++-++.+ ++..|..-. ++.+....+. ..+.-.....++....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~----------------~~v~~~~ag~~gl~~~~ 73 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDP----------------ALVFPTLAGALGLHVQP 73 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCch----------------hHhHHHHHhhccccccc
Confidence 468999999999999999999988 566776544 4544433333 33333333334443322
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME 354 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~ 354 (597)
. +.....+.....+++.++|+||.... .+.-..+...+..+...-.|+.|+|... .+.....
T Consensus 74 g---~~~~~~~~~~~~~rr~llvldncehl--~~~~a~~i~all~~~~~~~~~atsre~~-------------l~~ge~~ 135 (414)
T COG3903 74 G---DSAVDTLVRRIGDRRALLVLDNCEHL--LDACAALIVALLGACPRLAILATSREAI-------------LVAGEVH 135 (414)
T ss_pred c---hHHHHHHHHHHhhhhHHHHhcCcHHH--HHHHHHHHHHHHccchhhhhHHHhHhhh-------------ccccccc
Confidence 1 12233445556688999999998322 1233335555666777778999999873 3334444
Q ss_pred eecCCCChH-HHHHHHHHHhccCCCC-CCccchHHHHHHHHHhcCCchHHHHHHHhhhccCCCHHHHHHHHhhhcccCCh
Q 041007 355 IGLGELSEE-ECRSLFRQIAFHGRSS-DYREKFEPIGRRVVGKCKGLPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDS 432 (597)
Q Consensus 355 ~~l~~Ls~~-es~~Lf~~~~~~~~~~-~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~ 432 (597)
..+.+|+.. ++.++|...+...... .........+.+|+++..|.|++|..+++..+.- .+.+....|+.....+..
T Consensus 136 ~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~ 214 (414)
T COG3903 136 RRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTG 214 (414)
T ss_pred ccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhc
Confidence 677777765 7888888776432221 2223346678999999999999999999887643 233333333221111110
Q ss_pred hhhhhcCCCCCcccchhccccCCChhHhHHHHHhhcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhC
Q 041007 433 EICKRAGVGYECLSPLLLSYFDLSPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSR 512 (597)
Q Consensus 433 ~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~r 512 (597)
.......-.......+.+||.-|..-.+-.|..++.|...|... ...|.+-|-.. ..+.-..-.-+..|+++
T Consensus 215 ~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~----~~~~y~~~~a~~ll~~k 286 (414)
T COG3903 215 GARLAVLRQQTLRASLDWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADV----DVPRYLVLLALTLLVDK 286 (414)
T ss_pred ccccchhHHHhccchhhhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCcc----ccchHHHHHHHHHHhhc
Confidence 00000011345678899999999999999999999998886544 34455544311 11222344556778899
Q ss_pred CCcccccccCCCCeeeEEEeChHHHHHHHHhh
Q 041007 513 SLFQDFQKSEFDGRIIRCQMHPIVHEFAQLLS 544 (597)
Q Consensus 513 sli~~~~~~~~~~~~~~~~mH~lv~~~a~~~~ 544 (597)
|++........ ..|+.-+-++.|+..+.
T Consensus 287 slv~a~~~~~~----a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 287 SLVVALDLLGR----ARYRLLETGRRYALAEL 314 (414)
T ss_pred cchhhhhhhhH----HHHHHHHHHHHHHHHHH
Confidence 98864433221 23666666666665543
No 24
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3e-07 Score=93.97 Aligned_cols=212 Identities=19% Similarity=0.202 Sum_probs=132.6
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCC--eeEEEEecCCCchh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFD--KRIWVSASYPRDEI 242 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~~~~~~~~~ 242 (597)
|..+.+|+++++++...|...-. +..+..+.|+|++|+|||+.++.+++ +++.... ..++|++......
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~------~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~- 86 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR------GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTP- 86 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc------CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCH-
Confidence 44588999999999998875544 22344599999999999999999999 4444322 2688888877777
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhc--CceEEEEEecccCCCCcchHHHHHHhhcCC
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAYPRYWEQLMYSLKSG 320 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~ 320 (597)
.+++..|+..++..........+....+.+.+. ++.+++|||++........ +.+...+...
T Consensus 87 ---------------~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 87 ---------------YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred ---------------HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 899999999987554444555666666776665 5789999999976653333 3444444332
Q ss_pred CC-CcEEEEE-ccCCCCCCCcccccccccCccccc---eeecCCCChHHHHHHHHHHhccCC-CCCCccchHHHHHHHHH
Q 041007 321 SE-GSRILVT-RSGGKNGTNMTEIGLGEKNGTNMM---EIGLGELSEEECRSLFRQIAFHGR-SSDYREKFEPIGRRVVG 394 (597)
Q Consensus 321 ~~-gs~IIvT-tR~~~~~~~~~~~~~~~~~~~~~~---~~~l~~Ls~~es~~Lf~~~~~~~~-~~~~~~~~~~~~~~I~~ 394 (597)
.. .++|++- .-+....... ....+.... .+...|-+.+|-.+.+..++-.+- .....+..-+.+..++.
T Consensus 151 ~~~~~~v~vi~i~n~~~~~~~-----ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a 225 (366)
T COG1474 151 GENKVKVSIIAVSNDDKFLDY-----LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA 225 (366)
T ss_pred cccceeEEEEEEeccHHHHHH-----hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 22 3444332 2222100000 000111111 278999999999999998874322 22333444455555555
Q ss_pred hcC-CchHHHHHH
Q 041007 395 KCK-GLPFAVKIL 406 (597)
Q Consensus 395 ~~~-GlPLai~~~ 406 (597)
.-+ ---.||..+
T Consensus 226 ~~~GDAR~aidil 238 (366)
T COG1474 226 AESGDARKAIDIL 238 (366)
T ss_pred HcCccHHHHHHHH
Confidence 555 455565544
No 25
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.73 E-value=2.5e-07 Score=89.18 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=103.2
Q ss_pred chhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhh
Q 041007 171 RNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEIS 250 (597)
Q Consensus 171 R~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~ 250 (597)
.+..++++..++.. .....+.|+|++|+|||+||+.+++. ........++++++.....
T Consensus 22 ~~~~~~~l~~~~~~----------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~--------- 80 (226)
T TIGR03420 22 NAELLAALRQLAAG----------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA--------- 80 (226)
T ss_pred cHHHHHHHHHHHhc----------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---------
Confidence 45567777777642 23578999999999999999999984 3333334556654321110
Q ss_pred hcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchH-HHHHHhhcC-CCCCcEEEE
Q 041007 251 VARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYW-EQLMYSLKS-GSEGSRILV 328 (597)
Q Consensus 251 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~-~~l~~~l~~-~~~gs~IIv 328 (597)
. .. +...+.+ .-+|||||++.......| +.+...+.. ...+..+|+
T Consensus 81 -------------~--------------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIi 128 (226)
T TIGR03420 81 -------------D--------------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLI 128 (226)
T ss_pred -------------H--------------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 0 00 1111222 248999999876533233 334444332 223457888
Q ss_pred EccCCCCCCCcccccccccCccc----cceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 041007 329 TRSGGKNGTNMTEIGLGEKNGTN----MMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVK 404 (597)
Q Consensus 329 TtR~~~~~~~~~~~~~~~~~~~~----~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 404 (597)
|++......... ...... ...+++.|++.++...++...+...+. . --.+....|++.+.|+|.-+.
T Consensus 129 ts~~~~~~~~~~-----~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~---~~~~~l~~L~~~~~gn~r~L~ 199 (226)
T TIGR03420 129 AGRAAPAQLPLR-----LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL-Q---LPDEVADYLLRHGSRDMGSLM 199 (226)
T ss_pred ECCCChHHCCcc-----cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHhccCCHHHHH
Confidence 888652111000 001111 123899999999999998876532221 1 124566788888999998887
Q ss_pred HHHhhh
Q 041007 405 ILGSLL 410 (597)
Q Consensus 405 ~~~~~l 410 (597)
-+...+
T Consensus 200 ~~l~~~ 205 (226)
T TIGR03420 200 ALLDAL 205 (226)
T ss_pred HHHHHH
Confidence 664443
No 26
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.71 E-value=7e-07 Score=91.76 Aligned_cols=204 Identities=14% Similarity=0.087 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc-CC-eeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN-FD-KRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~ 243 (597)
..++|++..++.|..++... ..+.+.|+|++|+||||+|+.+++. ...+ +. ..+.++++.......
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~----------~~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~~~~~ 82 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP----------NLPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFFDQGK 82 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC----------CCceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhhhcch
Confidence 56889999999999988732 3456889999999999999999873 3222 21 233444332111000
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCC-CCchhhHHHHHHHHHHHh--cCceEEEEEecccCCCCcchHHHHHHhhcCC
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGS-VSSQVEMETVLQYINEFV--QGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG 320 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~l~~~L--~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~ 320 (597)
. ... .+ .... .+....... .........+........ ...+-+|||||++... ......+...+...
T Consensus 83 ~---~~~--~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-~~~~~~L~~~le~~ 152 (337)
T PRK12402 83 K---YLV--ED---PRFA-HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-EDAQQALRRIMEQY 152 (337)
T ss_pred h---hhh--cC---cchh-hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-HHHHHHHHHHHHhc
Confidence 0 000 00 0000 000000000 000111111222222211 1344589999997654 33445566555555
Q ss_pred CCCcEEEEEccCCCCCCCcccccccccCccc-cceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCc
Q 041007 321 SEGSRILVTRSGGKNGTNMTEIGLGEKNGTN-MMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGL 399 (597)
Q Consensus 321 ~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 399 (597)
...+++|+|+........ .+.. ...+.+.|++.++...++...+...+.. -..+....|++.++|.
T Consensus 153 ~~~~~~Il~~~~~~~~~~---------~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gd 219 (337)
T PRK12402 153 SRTCRFIIATRQPSKLIP---------PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGD 219 (337)
T ss_pred cCCCeEEEEeCChhhCch---------hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCC
Confidence 556778887754421110 1111 1238899999999999998876433222 1245678899999987
Q ss_pred hHHHH
Q 041007 400 PFAVK 404 (597)
Q Consensus 400 PLai~ 404 (597)
+-.+.
T Consensus 220 lr~l~ 224 (337)
T PRK12402 220 LRKAI 224 (337)
T ss_pred HHHHH
Confidence 65543
No 27
>PRK04195 replication factor C large subunit; Provisional
Probab=98.70 E-value=1.2e-06 Score=93.97 Aligned_cols=184 Identities=15% Similarity=0.159 Sum_probs=108.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+..+++|..|+..... +...+.+.|+|++|+||||+|+.+++.. .|+. +-++++....
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~------g~~~~~lLL~GppG~GKTtla~ala~el----~~~~-ielnasd~r~----- 77 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK------GKPKKALLLYGPPGVGKTSLAHALANDY----GWEV-IELNASDQRT----- 77 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc------CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCCE-EEEccccccc-----
Confidence 5689999999999999975432 1236889999999999999999998842 1322 2233332111
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC---cchHHHHHHhhcCCCC
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY---PRYWEQLMYSLKSGSE 322 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~---~~~~~~l~~~l~~~~~ 322 (597)
......++....... .....++-+||||+++.... ...+..+...+.. .
T Consensus 78 ------------~~~i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~ 129 (482)
T PRK04195 78 ------------ADVIERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--A 129 (482)
T ss_pred ------------HHHHHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--C
Confidence 122222222211100 00113678999999976542 1234555555542 3
Q ss_pred CcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchH
Q 041007 323 GSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPF 401 (597)
Q Consensus 323 gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 401 (597)
+..||+|+.+...... ..+... ..+.+.+++.++....+...+...+... ..+....|++.++|..-
T Consensus 130 ~~~iIli~n~~~~~~~--------k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i----~~eaL~~Ia~~s~GDlR 197 (482)
T PRK04195 130 KQPIILTANDPYDPSL--------RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC----DDEALKEIAERSGGDLR 197 (482)
T ss_pred CCCEEEeccCccccch--------hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHH
Confidence 3456666644311100 011111 2289999999999998888775433221 14567899999999665
Q ss_pred HHHH
Q 041007 402 AVKI 405 (597)
Q Consensus 402 ai~~ 405 (597)
.+..
T Consensus 198 ~ain 201 (482)
T PRK04195 198 SAIN 201 (482)
T ss_pred HHHH
Confidence 5543
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=1.5e-07 Score=100.30 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+.-.+.|..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.|.+...-.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~---------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~---- 80 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR---------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR---- 80 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh----
Confidence 458999999999988887432 2346799999999999999999874322222333344432210000
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCC-CCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHhhcCCCCC
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGS-VSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEG 323 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~g 323 (597)
...+. -+..+... .....+..++...+... ..+++-++|||+++... ...++.+...+......
T Consensus 81 -----~~~h~--------dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-~~a~naLLk~LEep~~~ 146 (504)
T PRK14963 81 -----RGAHP--------DVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-KSAFNALLKTLEEPPEH 146 (504)
T ss_pred -----cCCCC--------ceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-HHHHHHHHHHHHhCCCC
Confidence 00000 00000000 01111222222222211 22456799999997665 55677787777766566
Q ss_pred cEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHH
Q 041007 324 SRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFA 402 (597)
Q Consensus 324 s~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 402 (597)
+.+|+++........ .+...+ .+++.+++.++....+.+.+...+... ..+.+..|++.++|.+--
T Consensus 147 t~~Il~t~~~~kl~~---------~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~ 213 (504)
T PRK14963 147 VIFILATTEPEKMPP---------TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRD 213 (504)
T ss_pred EEEEEEcCChhhCCh---------HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 666666643311000 111112 299999999999999998775333211 245678899999998854
Q ss_pred H
Q 041007 403 V 403 (597)
Q Consensus 403 i 403 (597)
+
T Consensus 214 a 214 (504)
T PRK14963 214 A 214 (504)
T ss_pred H
Confidence 4
No 29
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=9.5e-07 Score=97.55 Aligned_cols=194 Identities=13% Similarity=0.160 Sum_probs=114.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCe-eEEEEecCCCchhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDK-RIWVSASYPRDEIRV 244 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~ 244 (597)
.++||.+.-++.|..++.... -...+.++|+.|+||||+|+.+++...-...... -+..|
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r---------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C---------- 76 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR---------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC---------- 76 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC---------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc----------
Confidence 468999999999999887432 2345689999999999999999884211111000 00000
Q ss_pred hhhhhhhcccchHHHHHHHHHH-------hccCC-CCchhhHHHHHHHHHH-HhcCceEEEEEecccCCCCcchHHHHHH
Q 041007 245 ARDEISVARDRDEIRVAKAILE-------SLKGS-VSSQVEMETVLQYINE-FVQGKKVLLVLDDLWWNAYPRYWEQLMY 315 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~-------~l~~~-~~~~~~~~~~~~~l~~-~L~~kr~LLVLDdv~~~~~~~~~~~l~~ 315 (597)
.....+.. .+... .....+...+...+.. -..++.-++|||+++... ....+.++.
T Consensus 77 --------------~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-~eAqNALLK 141 (944)
T PRK14949 77 --------------SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-RSSFNALLK 141 (944)
T ss_pred --------------hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-HHHHHHHHH
Confidence 00000000 00000 0111122222222221 123667799999998886 667788888
Q ss_pred hhcCCCCCcEEEEEccCCCCCCCcccccccccCcc-ccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHH
Q 041007 316 SLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGT-NMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVG 394 (597)
Q Consensus 316 ~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~-~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~ 394 (597)
.+.......++|++|.+...... -+. +...+.+.+|+.++....+.+.+...+. ....+.+..|++
T Consensus 142 tLEEPP~~vrFILaTTe~~kLl~---------TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~ 208 (944)
T PRK14949 142 TLEEPPEHVKFLLATTDPQKLPV---------TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAK 208 (944)
T ss_pred HHhccCCCeEEEEECCCchhchH---------HHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHH
Confidence 88776777788777665521110 111 1223999999999999999887643221 112456788999
Q ss_pred hcCCchH-HHHHH
Q 041007 395 KCKGLPF-AVKIL 406 (597)
Q Consensus 395 ~~~GlPL-ai~~~ 406 (597)
.++|.|- |+.++
T Consensus 209 ~S~Gd~R~ALnLL 221 (944)
T PRK14949 209 AANGSMRDALSLT 221 (944)
T ss_pred HcCCCHHHHHHHH
Confidence 9999885 44443
No 30
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.65 E-value=3.6e-07 Score=81.18 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=72.5
Q ss_pred ccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhh
Q 041007 169 HGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDE 248 (597)
Q Consensus 169 vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~ 248 (597)
+|++..+..+...+... ..+.+.|+|++|+|||++++.+++. ....-..++++........
T Consensus 1 ~~~~~~~~~i~~~~~~~----------~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~------- 61 (151)
T cd00009 1 VGQEEAIEALREALELP----------PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEG------- 61 (151)
T ss_pred CchHHHHHHHHHHHhCC----------CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhh-------
Confidence 47888899998888632 3468999999999999999999984 3222234566665433222
Q ss_pred hhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC------CC
Q 041007 249 ISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG------SE 322 (597)
Q Consensus 249 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~------~~ 322 (597)
......+ ... ............++.+||+||++... ......+...+... ..
T Consensus 62 ---------~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~lilDe~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 119 (151)
T cd00009 62 ---------LVVAELF-GHF-----------LVRLLFELAEKAKPGVLFIDEIDSLS-RGAQNALLRVLETLNDLRIDRE 119 (151)
T ss_pred ---------hHHHHHh-hhh-----------hHhHHHHhhccCCCeEEEEeChhhhh-HHHHHHHHHHHHhcCceeccCC
Confidence 0000000 000 00111112233567899999997652 12233344333332 46
Q ss_pred CcEEEEEccCC
Q 041007 323 GSRILVTRSGG 333 (597)
Q Consensus 323 gs~IIvTtR~~ 333 (597)
+..+|+||...
T Consensus 120 ~~~ii~~~~~~ 130 (151)
T cd00009 120 NVRVIGATNRP 130 (151)
T ss_pred CeEEEEecCcc
Confidence 78888888876
No 31
>PLN03025 replication factor C subunit; Provisional
Probab=98.64 E-value=9.2e-07 Score=89.81 Aligned_cols=182 Identities=13% Similarity=0.136 Sum_probs=104.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhh-ccCCe-eEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVK-ANFDK-RIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~-~~wv~~~~~~~~~~ 243 (597)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|..+++. .. ..|.. ++-++.+....
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~----------~~~~lll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~eln~sd~~~--- 77 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG----------NMPNLILSGPPGTGKTTSILALAHE--LLGPNYKEAVLELNASDDRG--- 77 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC----------CCceEEEECCCCCCHHHHHHHHHHH--HhcccCccceeeeccccccc---
Confidence 45789998888888877632 3456789999999999999999883 21 12221 11111111111
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCC
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEG 323 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~g 323 (597)
.+..+.++..+..... ....++.-+++||+++... ......+...+......
T Consensus 78 --------------~~~vr~~i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt-~~aq~aL~~~lE~~~~~ 129 (319)
T PLN03025 78 --------------IDVVRNKIKMFAQKKV-------------TLPPGRHKIVILDEADSMT-SGAQQALRRTMEIYSNT 129 (319)
T ss_pred --------------HHHHHHHHHHHHhccc-------------cCCCCCeEEEEEechhhcC-HHHHHHHHHHHhcccCC
Confidence 1122222211110000 0002356799999998776 44445565555544566
Q ss_pred cEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHH
Q 041007 324 SRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFA 402 (597)
Q Consensus 324 s~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 402 (597)
+++|+++........ .+...+ .+++.++++++....+...+...+.... .+....|++.++|..-.
T Consensus 130 t~~il~~n~~~~i~~---------~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 130 TRFALACNTSSKIIE---------PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred ceEEEEeCCccccch---------hHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 777777654311100 111122 2899999999999998887754332211 45678899999986643
Q ss_pred H
Q 041007 403 V 403 (597)
Q Consensus 403 i 403 (597)
+
T Consensus 197 a 197 (319)
T PLN03025 197 A 197 (319)
T ss_pred H
Confidence 3
No 32
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1e-06 Score=91.04 Aligned_cols=192 Identities=15% Similarity=0.168 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+.-++.|...+.... -...+.++|+.|+||||+|+.+++.......... .+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~---------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~---- 75 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR---------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRK---- 75 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC---------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCC----
Confidence 468999999999999887432 2456789999999999999999873211111100 00000
Q ss_pred hhhhhhcccchHHHHHHHHHHhc-------cCCC-CchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILESL-------KGSV-SSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l-------~~~~-~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-.....+.... .... ....+...+.+.+... ..+++-++|+|+++... ...++.+...
T Consensus 76 ------------c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-~~a~naLLk~ 142 (363)
T PRK14961 76 ------------CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-RHSFNALLKT 142 (363)
T ss_pred ------------CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-HHHHHHHHHH
Confidence 00000000000 0000 0111111222211111 12455699999998776 4457777777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+...+....+|++|.+...... .+... ..+++.|++.++..+.+...+...+... ..+.+..|++.
T Consensus 143 lEe~~~~~~fIl~t~~~~~l~~---------tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~ 209 (363)
T PRK14961 143 LEEPPQHIKFILATTDVEKIPK---------TILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYH 209 (363)
T ss_pred HhcCCCCeEEEEEcCChHhhhH---------HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHH
Confidence 7766667778877754311000 11111 2299999999999998888664322111 24567889999
Q ss_pred cCCchHHH
Q 041007 396 CKGLPFAV 403 (597)
Q Consensus 396 ~~GlPLai 403 (597)
++|.|--+
T Consensus 210 s~G~~R~a 217 (363)
T PRK14961 210 AHGSMRDA 217 (363)
T ss_pred cCCCHHHH
Confidence 99988543
No 33
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.64 E-value=7e-07 Score=82.94 Aligned_cols=182 Identities=20% Similarity=0.236 Sum_probs=95.7
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRV 244 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 244 (597)
-.+|||.++-+..+.-++..... .+.....+.+|||+|+||||||.-+++ .....|. +.+... ...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-----r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-i~k--- 88 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-----RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-IEK--- 88 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-----TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC---S---
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-----cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh-hhh---
Confidence 46799999988887665543211 013577899999999999999999998 4444442 222210 000
Q ss_pred hhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC----
Q 041007 245 ARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG---- 320 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~---- 320 (597)
..++...+.. + +++-+|++|+++..+ ...-+.+...+.++
T Consensus 89 ---------------------------------~~dl~~il~~-l-~~~~ILFIDEIHRln-k~~qe~LlpamEd~~idi 132 (233)
T PF05496_consen 89 ---------------------------------AGDLAAILTN-L-KEGDILFIDEIHRLN-KAQQEILLPAMEDGKIDI 132 (233)
T ss_dssp ---------------------------------CHHHHHHHHT----TT-EEEECTCCC---HHHHHHHHHHHHCSEEEE
T ss_pred ---------------------------------HHHHHHHHHh-c-CCCcEEEEechhhcc-HHHHHHHHHHhccCeEEE
Confidence 0111111111 2 245688899998776 44444455544321
Q ss_pred ----CCC-----------cEEEEEccCCCCCCCcccccccccCccccce--eecCCCChHHHHHHHHHHhccCCCCCCcc
Q 041007 321 ----SEG-----------SRILVTRSGGKNGTNMTEIGLGEKNGTNMME--IGLGELSEEECRSLFRQIAFHGRSSDYRE 383 (597)
Q Consensus 321 ----~~g-----------s~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~--~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~ 383 (597)
+.+ +.|=.|||...... ......+ .++...+.+|-.++..+.+..-.. +
T Consensus 133 iiG~g~~ar~~~~~l~~FTligATTr~g~ls~----------pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~ 198 (233)
T PF05496_consen 133 IIGKGPNARSIRINLPPFTLIGATTRAGLLSS----------PLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----E 198 (233)
T ss_dssp EBSSSSS-BEEEEE----EEEEEESSGCCTSH----------CCCTTSSEEEE----THHHHHHHHHHCCHCTT-----E
T ss_pred EeccccccceeeccCCCceEeeeeccccccch----------hHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----C
Confidence 111 12335677652111 1122222 579999999999999877642221 2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHhhh
Q 041007 384 KFEPIGRRVVGKCKGLPFAVKILGSLL 410 (597)
Q Consensus 384 ~~~~~~~~I~~~~~GlPLai~~~~~~l 410 (597)
-..+.+.+|+++|.|-|--..-+-...
T Consensus 199 i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 199 IDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp E-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 235678999999999997655444433
No 34
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.6e-06 Score=87.74 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCCh----hhhccCCeeEEEEecCCCch
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDS----DVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~~~~~~~~ 241 (597)
.+++|.+.-++.|..++.... -.....++|+.|+||||+|+.+++.. ....|++...|.........
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~---------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~ 74 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR---------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIG 74 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC---------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCC
Confidence 357899889999999987432 34677899999999999999987731 12234454444332111000
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCC
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGS 321 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~ 321 (597)
.+-.+++.+.+... -..+++-++|+|+++..+ ...++.+...+...+
T Consensus 75 ----------------v~~ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~-~~a~naLLK~LEepp 121 (313)
T PRK05564 75 ----------------VDDIRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMT-EQAQNAFLKTIEEPP 121 (313)
T ss_pred ----------------HHHHHHHHHHHhcC----------------cccCCceEEEEechhhcC-HHHHHHHHHHhcCCC
Confidence 11122222222110 012456688888887665 667889999998888
Q ss_pred CCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCch
Q 041007 322 EGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLP 400 (597)
Q Consensus 322 ~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlP 400 (597)
.++.+|++|.+...... .+...+. +++.++++++....+.+...+ . ..+.++.++..++|.|
T Consensus 122 ~~t~~il~~~~~~~ll~---------TI~SRc~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 122 KGVFIILLCENLEQILD---------TIKSRCQIYKLNRLSKEEIEKFISYKYND----I----KEEEKKSAIAFSDGIP 184 (313)
T ss_pred CCeEEEEEeCChHhCcH---------HHHhhceeeeCCCcCHHHHHHHHHHHhcC----C----CHHHHHHHHHHcCCCH
Confidence 88999988865411100 1111122 999999999998888665421 1 1334678899999998
Q ss_pred HHHHHH
Q 041007 401 FAVKIL 406 (597)
Q Consensus 401 Lai~~~ 406 (597)
.-+...
T Consensus 185 ~~a~~~ 190 (313)
T PRK05564 185 GKVEKF 190 (313)
T ss_pred HHHHHH
Confidence 765433
No 35
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1e-06 Score=94.46 Aligned_cols=193 Identities=15% Similarity=0.184 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+++. ..... ++... +...
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr---------l~HAyLF~GPpGvGKTTlAriLAK~--LnC~~----~~~~~-pCg~---- 74 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR---------LHHAYLFTGTRGVGKTTIARILAKC--LNCET----GVTST-PCEV---- 74 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHH--hCCCc----CCCCC-CCcc----
Confidence 468999999999999998432 2467899999999999999998773 21100 11000 0000
Q ss_pred hhhhhhcccchHHHHHHHHHHh-------ccCC-CCchhhHHHHHHHHHH-HhcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILES-------LKGS-VSSQVEMETVLQYINE-FVQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~-------l~~~-~~~~~~~~~~~~~l~~-~L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-...+.+... +... .....+...+...+.. -..++.-++|||+++..+ ....+.+...
T Consensus 75 ------------C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-~~A~NALLKt 141 (702)
T PRK14960 75 ------------CATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-THSFNALLKT 141 (702)
T ss_pred ------------CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-HHHHHHHHHH
Confidence 0000000000 0000 0011111112221111 123566799999998776 5567778777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhc
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKC 396 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~ 396 (597)
+.....+..+|++|.+....... -..+...+++.+++.++....+.+.+...+... -.+....|++.+
T Consensus 142 LEEPP~~v~FILaTtd~~kIp~T--------IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S 209 (702)
T PRK14960 142 LEEPPEHVKFLFATTDPQKLPIT--------VISRCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESA 209 (702)
T ss_pred HhcCCCCcEEEEEECChHhhhHH--------HHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHc
Confidence 77666777888877654211100 111122299999999999999988775433221 245678899999
Q ss_pred CCchHHH
Q 041007 397 KGLPFAV 403 (597)
Q Consensus 397 ~GlPLai 403 (597)
+|.+-.+
T Consensus 210 ~GdLRdA 216 (702)
T PRK14960 210 QGSLRDA 216 (702)
T ss_pred CCCHHHH
Confidence 9977433
No 36
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.61 E-value=2.1e-06 Score=87.44 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=105.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++.. ....+.. .++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~----------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~---- 80 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK----------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDER---- 80 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC----------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEecccccc----
Confidence 45889999999999998732 34567999999999999999998731 1111211 12222111000
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcE
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSR 325 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~ 325 (597)
+ .......+..+....+ .....+-+|++|+++... ......+...+......+.
T Consensus 81 ----------~-~~~~~~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~-~~~~~~L~~~le~~~~~~~ 134 (319)
T PRK00440 81 ----------G-IDVIRNKIKEFARTAP--------------VGGAPFKIIFLDEADNLT-SDAQQALRRTMEMYSQNTR 134 (319)
T ss_pred ----------c-hHHHHHHHHHHHhcCC--------------CCCCCceEEEEeCcccCC-HHHHHHHHHHHhcCCCCCe
Confidence 0 1111111111100000 001235689999996654 3345566666665556677
Q ss_pred EEEEccCCCCCCCcccccccccCcc-ccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHH
Q 041007 326 ILVTRSGGKNGTNMTEIGLGEKNGT-NMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAV 403 (597)
Q Consensus 326 IIvTtR~~~~~~~~~~~~~~~~~~~-~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 403 (597)
+|+++........ ... ....+++.+++.++....+...+...+... ..+.+..|++.++|.+--+
T Consensus 135 lIl~~~~~~~l~~---------~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 135 FILSCNYSSKIID---------PIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred EEEEeCCccccch---------hHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 7777654311100 111 111289999999999999888775332211 2456788999999987654
No 37
>PTZ00202 tuzin; Provisional
Probab=98.61 E-value=2e-06 Score=87.15 Aligned_cols=170 Identities=13% Similarity=0.136 Sum_probs=100.5
Q ss_pred ccCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 162 VIDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 162 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
+.++..|+||+.++.+|...|...+. ..++++.|+|++|+|||||++.+..... +. .++++.. ..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~-------~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~ 322 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT-------AHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GT 322 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC-------CCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CH
Confidence 56678899999999999999975432 2346999999999999999999987422 21 2222222 33
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccCCCCch--hhHHHHHHHHHHHh-c-CceEEEEEecccCCCCcchHHHHH---
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKGSVSSQ--VEMETVLQYINEFV-Q-GKKVLLVLDDLWWNAYPRYWEQLM--- 314 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~L-~-~kr~LLVLDdv~~~~~~~~~~~l~--- 314 (597)
.+++..++.+|+.+.... .-...+.+.+.+.- . +++.+||+-=- ..+ ++..+.
T Consensus 323 ----------------eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~---~l~rvyne~ 382 (550)
T PTZ00202 323 ----------------EDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGS---SLQRVYNEV 382 (550)
T ss_pred ----------------HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCC---cHHHHHHHH
Confidence 899999999999743221 22334444444332 2 55666665321 112 222221
Q ss_pred HhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHh
Q 041007 315 YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIA 373 (597)
Q Consensus 315 ~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~ 373 (597)
..|.....-|+|++----+ ...+....++..+. |.+.+++.++|.++-.+..
T Consensus 383 v~la~drr~ch~v~evple--slt~~~~~lprldf-----~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 383 VALACDRRLCHVVIEVPLE--SLTIANTLLPRLDF-----YLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HHHHccchhheeeeeehHh--hcchhcccCcccee-----EecCCCCHHHHHHHHhhcc
Confidence 1333445567777653322 11111111111111 8899999999988766543
No 38
>PRK08727 hypothetical protein; Validated
Probab=98.60 E-value=9.8e-07 Score=85.14 Aligned_cols=159 Identities=18% Similarity=0.117 Sum_probs=91.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
...+.|+|++|+|||+|++.+++. .......+.++++... ...+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~----------------------~~~~------------ 84 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAA----------------------AGRL------------ 84 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHh----------------------hhhH------------
Confidence 356999999999999999999884 3333345566653211 0000
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHH-HHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCccccce
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQ-LMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME 354 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~-l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~ 354 (597)
...+. .+ .+.-+|||||++.......|.. +...+.. ..++..||+|++..+.......-++.+ .......
T Consensus 85 -----~~~~~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S-Rl~~~~~ 156 (233)
T PRK08727 85 -----RDALE-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS-RLAQCIR 156 (233)
T ss_pred -----HHHHH-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH-HHhcCce
Confidence 01111 11 1335899999976543334443 3332222 234677999998763322111111100 0001123
Q ss_pred eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHH
Q 041007 355 IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAV 403 (597)
Q Consensus 355 ~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 403 (597)
+++.+++.++-.+++.+.+...+.. --.+....|++.++|..-.+
T Consensus 157 ~~l~~~~~e~~~~iL~~~a~~~~l~----l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 157 IGLPVLDDVARAAVLRERAQRRGLA----LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhCCCCHHHH
Confidence 8999999999999999877532221 12556788888888766554
No 39
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=2.6e-06 Score=86.79 Aligned_cols=198 Identities=13% Similarity=0.166 Sum_probs=115.6
Q ss_pred cCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc----CCeeEEEEecCC
Q 041007 163 IDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN----FDKRIWVSASYP 238 (597)
Q Consensus 163 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~ 238 (597)
.....++|.++..+.|...+.... .+..+.|+|+.|+||||+|..+.+. +-.+ +... ....+
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr---------l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~ 85 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK---------LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADP 85 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC---------CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCC
Confidence 344668999999999999997432 3457999999999999999988773 2211 1110 00000
Q ss_pred CchhhhhhhhhhhcccchHHHHHHHHHHh-------ccCC-------CCchhhHHHHHHHHHHHhc-----CceEEEEEe
Q 041007 239 RDEIRVARDEISVARDRDEIRVAKAILES-------LKGS-------VSSQVEMETVLQYINEFVQ-----GKKVLLVLD 299 (597)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~-------l~~~-------~~~~~~~~~~~~~l~~~L~-----~kr~LLVLD 299 (597)
... ....+.+... +..+ .......+++. .+.+++. ++.-++|+|
T Consensus 86 ~~~----------------c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviID 148 (351)
T PRK09112 86 DPA----------------SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIID 148 (351)
T ss_pred CCC----------------CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEE
Confidence 000 1111111111 0000 01112233322 3333332 566799999
Q ss_pred cccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCC
Q 041007 300 DLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRS 378 (597)
Q Consensus 300 dv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~ 378 (597)
+++..+ ....+.+...+.....+..+|++|........ .+... ..+.+.|++.++..+++.+....
T Consensus 149 eAd~l~-~~aanaLLk~LEEpp~~~~fiLit~~~~~llp---------tIrSRc~~i~l~pl~~~~~~~~L~~~~~~--- 215 (351)
T PRK09112 149 PADDMN-RNAANAILKTLEEPPARALFILISHSSGRLLP---------TIRSRCQPISLKPLDDDELKKALSHLGSS--- 215 (351)
T ss_pred chhhcC-HHHHHHHHHHHhcCCCCceEEEEECChhhccH---------HHHhhccEEEecCCCHHHHHHHHHHhhcc---
Confidence 999887 66677788777665556665555544311110 11112 23999999999999999874321
Q ss_pred CCCccchHHHHHHHHHhcCCchHHHHHHH
Q 041007 379 SDYREKFEPIGRRVVGKCKGLPFAVKILG 407 (597)
Q Consensus 379 ~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 407 (597)
.. -..+.+..|++.++|.|.....+.
T Consensus 216 --~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 216 --QG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred --cC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 114456789999999998665443
No 40
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1.8e-06 Score=93.43 Aligned_cols=196 Identities=11% Similarity=0.142 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+......... +..+....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r---------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C~------ 77 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR---------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVCQ------ 77 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCcccH------
Confidence 468999999999999998432 245789999999999999999977311111100 00011000
Q ss_pred hhhhhhcccchHHHHHHHHHH-------hccC-CCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILE-------SLKG-SVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~-------~l~~-~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
....+.. .+.. ......++..++...... ..+++-++|||+++..+ ....+.++..
T Consensus 78 --------------sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-~~A~NALLKt 142 (709)
T PRK08691 78 --------------SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-KSAFNAMLKT 142 (709)
T ss_pred --------------HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-HHHHHHHHHH
Confidence 0000000 0000 000111122222221111 12566799999997665 4456667777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhc
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKC 396 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~ 396 (597)
+......+.+|++|.+....... -..+...+.+.+++.++....+.+.+...+... ..+....|++.+
T Consensus 143 LEEPp~~v~fILaTtd~~kL~~T--------IrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A 210 (709)
T PRK08691 143 LEEPPEHVKFILATTDPHKVPVT--------VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAA 210 (709)
T ss_pred HHhCCCCcEEEEEeCCccccchH--------HHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHh
Confidence 76655667777777554211100 011122289999999999999988775433221 245678899999
Q ss_pred CCchHHH-HHH
Q 041007 397 KGLPFAV-KIL 406 (597)
Q Consensus 397 ~GlPLai-~~~ 406 (597)
+|.+.-+ ..+
T Consensus 211 ~GslRdAlnLL 221 (709)
T PRK08691 211 AGSMRDALSLL 221 (709)
T ss_pred CCCHHHHHHHH
Confidence 9988544 444
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2.1e-06 Score=91.86 Aligned_cols=185 Identities=17% Similarity=0.218 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhc-------------------c
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKA-------------------N 226 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~ 226 (597)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++...-.. .
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r---------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~ 86 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK---------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNS 86 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCC
Confidence 468899999999999887432 235678999999999999999976211000 1
Q ss_pred CCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCC
Q 041007 227 FDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNA 305 (597)
Q Consensus 227 F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~ 305 (597)
|...+++..... ....+...+.+.+... ..+++-++|+|+++..+
T Consensus 87 ~~dlieidaas~----------------------------------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls 132 (546)
T PRK14957 87 FIDLIEIDAASR----------------------------------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS 132 (546)
T ss_pred CCceEEeecccc----------------------------------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc
Confidence 111111111000 0111222233322221 23566799999998776
Q ss_pred CcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccc
Q 041007 306 YPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREK 384 (597)
Q Consensus 306 ~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~ 384 (597)
...++.+...+......+.+|++|.+...... .+...+ .+++.+++.++....+.+.+...+. .-
T Consensus 133 -~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~---------tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~ 198 (546)
T PRK14957 133 -KQSFNALLKTLEEPPEYVKFILATTDYHKIPV---------TILSRCIQLHLKHISQADIKDQLKIILAKENI----NS 198 (546)
T ss_pred -HHHHHHHHHHHhcCCCCceEEEEECChhhhhh---------hHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CC
Confidence 55677788888776667777765543311000 111112 2999999999998888876543221 11
Q ss_pred hHHHHHHHHHhcCCch-HHHHHHH
Q 041007 385 FEPIGRRVVGKCKGLP-FAVKILG 407 (597)
Q Consensus 385 ~~~~~~~I~~~~~GlP-Lai~~~~ 407 (597)
.......|++.++|.+ -|+..+-
T Consensus 199 e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 199 DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2456678999999966 4555553
No 42
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=2.4e-06 Score=92.83 Aligned_cols=195 Identities=13% Similarity=0.157 Sum_probs=113.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.++||.+.-++.|...+.... -...+.++|+.|+||||+|+.+++...-...+.. -.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~r---------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~-------- 75 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR---------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGE-------- 75 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCC--------
Confidence 468999999999999887432 2345789999999999999999874211110000 00000
Q ss_pred hhhhhhcccchHHHHHHHHHHh-------ccCC-CCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILES-------LKGS-VSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~-------l~~~-~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-.....|... +... .....+...+...+... ..++.-++|||+++... ....+.++..
T Consensus 76 ------------C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-~~a~NALLKt 142 (647)
T PRK07994 76 ------------CDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKT 142 (647)
T ss_pred ------------CHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-HHHHHHHHHH
Confidence 1111111100 0000 01111222222222211 23567799999998876 6677888888
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCcc-ccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGT-NMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~-~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+..-....++|++|.+...... -+. +...+.+.+++.++....+.+.+...+.. ........|++.
T Consensus 143 LEEPp~~v~FIL~Tt~~~kLl~---------TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~----~e~~aL~~Ia~~ 209 (647)
T PRK07994 143 LEEPPEHVKFLLATTDPQKLPV---------TILSRCLQFHLKALDVEQIRQQLEHILQAEQIP----FEPRALQLLARA 209 (647)
T ss_pred HHcCCCCeEEEEecCCccccch---------HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHH
Confidence 8776777777777666521110 111 12229999999999999998876332211 124556789999
Q ss_pred cCCchH-HHHHH
Q 041007 396 CKGLPF-AVKIL 406 (597)
Q Consensus 396 ~~GlPL-ai~~~ 406 (597)
++|.+- |+.++
T Consensus 210 s~Gs~R~Al~ll 221 (647)
T PRK07994 210 ADGSMRDALSLT 221 (647)
T ss_pred cCCCHHHHHHHH
Confidence 999776 44443
No 43
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.56 E-value=1.4e-06 Score=84.20 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=93.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
.+.+.|+|++|+|||+|++.+++. ....-..+.++++..... .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~-------------------~---------------- 87 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW-------------------F---------------- 87 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh-------------------h----------------
Confidence 468999999999999999999984 333333455665431100 0
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHH-HhhcCC-CCC-cEEEEEccCCCCCCCcccccccccCcccc-
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLM-YSLKSG-SEG-SRILVTRSGGKNGTNMTEIGLGEKNGTNM- 352 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~-~~l~~~-~~g-s~IIvTtR~~~~~~~~~~~~~~~~~~~~~- 352 (597)
...+.+.+. +--+|+|||++.......|+... ..+... ..| .++|+||+..+.......- .....
T Consensus 88 -~~~~~~~~~-----~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~-----~L~SRl 156 (235)
T PRK08084 88 -VPEVLEGME-----QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP-----DLASRL 156 (235)
T ss_pred -hHHHHHHhh-----hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH-----HHHHHH
Confidence 001111111 12489999997654334555432 333221 233 4799999866322111000 11121
Q ss_pred ---ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhh
Q 041007 353 ---MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGSLL 410 (597)
Q Consensus 353 ---~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 410 (597)
..+++.++++++-.+++.+.+...+- . --++...-|++.+.|..-.+..+-..+
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~~~~-~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARLRGF-E---LPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 22899999999999998886643221 1 125677889999998776665544433
No 44
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=5.5e-06 Score=84.93 Aligned_cols=199 Identities=14% Similarity=0.098 Sum_probs=114.6
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeE----EEEecCCC
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRI----WVSASYPR 239 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~----wv~~~~~~ 239 (597)
...+++|.+...+.|.+.+.... -...+.++|+.|+||+++|..+.+..--........ -.++.. .
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r---------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~ 86 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR---------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-D 86 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC---------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-C
Confidence 34568999999999999988432 245789999999999999988866311111000000 000000 0
Q ss_pred chhhhhhhhhhhcccchHHHHHHHHHHhccC--------------CCCchhhHHHHHHHHHHHhc-----CceEEEEEec
Q 041007 240 DEIRVARDEISVARDRDEIRVAKAILESLKG--------------SVSSQVEMETVLQYINEFVQ-----GKKVLLVLDD 300 (597)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~--------------~~~~~~~~~~~~~~l~~~L~-----~kr~LLVLDd 300 (597)
.. -...+.+...-.. .......+++ ++.+.+.+. +++.++|+|+
T Consensus 87 ~~----------------c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDe 149 (365)
T PRK07471 87 PD----------------HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDT 149 (365)
T ss_pred CC----------------ChHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEec
Confidence 00 0011111100000 0001122333 223333332 5567999999
Q ss_pred ccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCC
Q 041007 301 LWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSS 379 (597)
Q Consensus 301 v~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~ 379 (597)
+++.+ ......+...+..-..++.+|++|.+...... .+...+ .+.+.+++.++..+++......
T Consensus 150 ad~m~-~~aanaLLK~LEepp~~~~~IL~t~~~~~llp---------ti~SRc~~i~l~~l~~~~i~~~L~~~~~~---- 215 (365)
T PRK07471 150 ADEMN-ANAANALLKVLEEPPARSLFLLVSHAPARLLP---------TIRSRCRKLRLRPLAPEDVIDALAAAGPD---- 215 (365)
T ss_pred hHhcC-HHHHHHHHHHHhcCCCCeEEEEEECCchhchH---------HhhccceEEECCCCCHHHHHHHHHHhccc----
Confidence 99887 67778888888776667777777766521110 111222 2999999999999999876421
Q ss_pred CCccchHHHHHHHHHhcCCchHHHHHHH
Q 041007 380 DYREKFEPIGRRVVGKCKGLPFAVKILG 407 (597)
Q Consensus 380 ~~~~~~~~~~~~I~~~~~GlPLai~~~~ 407 (597)
.. ......+++.++|.|+....+.
T Consensus 216 -~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 216 -LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred -CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1223678999999998665543
No 45
>PRK05642 DNA replication initiation factor; Validated
Probab=98.55 E-value=1.7e-06 Score=83.52 Aligned_cols=162 Identities=16% Similarity=0.183 Sum_probs=95.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
...+.|+|+.|+|||.|++.+++. ....-..++|++... +...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~----------------------~~~~------------- 87 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE----------------------LLDR------------- 87 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH----------------------HHhh-------------
Confidence 367899999999999999999873 332223456665421 1110
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHH-HHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCcccc--
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQ-LMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-- 352 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~-l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-- 352 (597)
... +.+.+.+- =+||+||++.......|.. +...+.. ..+|..+|+|+...+........ .....
T Consensus 88 -~~~----~~~~~~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~-----~L~SRl~ 156 (234)
T PRK05642 88 -GPE----LLDNLEQY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLP-----DLKSRLT 156 (234)
T ss_pred -hHH----HHHhhhhC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCc-----cHHHHHh
Confidence 011 22222222 2788999975543345554 4444433 24567889998876332211100 11111
Q ss_pred --ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhh
Q 041007 353 --MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGSLL 410 (597)
Q Consensus 353 --~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 410 (597)
..+++.++++++-.+++..++...+. .. -.++..-|++.+.|..-.+..+-..|
T Consensus 157 ~gl~~~l~~~~~e~~~~il~~ka~~~~~-~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 157 LALVFQMRGLSDEDKLRALQLRASRRGL-HL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 22889999999999999966643221 11 15677889999988876665554443
No 46
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=5.2e-07 Score=93.95 Aligned_cols=199 Identities=10% Similarity=0.063 Sum_probs=112.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+.-+..|..++.... -...+.++|+.|+||||+|+.+++. +....... ...+.....-
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r---------i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~-~~pCg~C~sC---- 81 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK---------IGHAYIFFGPRGVGKTTIARILAKR--LNCENPIG-NEPCNECTSC---- 81 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHh--cCcccccC-ccccCCCcHH----
Confidence 468999999999999887432 2346899999999999999999874 22110000 0001100000
Q ss_pred hhhhhhcccchHHHHHHHHHH---hccC-CCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHhhcCC
Q 041007 246 RDEISVARDRDEIRVAKAILE---SLKG-SVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG 320 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~---~l~~-~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~ 320 (597)
..+...+.. .+.. ......+...+.+.+... ..++.-++|||+++... ...++.++..+...
T Consensus 82 ------------~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-~~A~NALLKtLEEP 148 (484)
T PRK14956 82 ------------LEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-DQSFNALLKTLEEP 148 (484)
T ss_pred ------------HHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-HHHHHHHHHHhhcC
Confidence 000000000 0000 001112222222222221 23566799999998776 66788887777665
Q ss_pred CCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCc
Q 041007 321 SEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGL 399 (597)
Q Consensus 321 ~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 399 (597)
.....+|++|........ .+...+. |.+.+++.++..+.+.+.+...+.. -..+....|++.++|.
T Consensus 149 p~~viFILaTte~~kI~~---------TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~----~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 149 PAHIVFILATTEFHKIPE---------TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ----YDQEGLFWIAKKGDGS 215 (484)
T ss_pred CCceEEEeecCChhhccH---------HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCh
Confidence 566666666654311110 1122222 9999999999999888876433221 1255678899999998
Q ss_pred hH-HHHHH
Q 041007 400 PF-AVKIL 406 (597)
Q Consensus 400 PL-ai~~~ 406 (597)
+- |+..+
T Consensus 216 ~RdAL~lL 223 (484)
T PRK14956 216 VRDMLSFM 223 (484)
T ss_pred HHHHHHHH
Confidence 84 33333
No 47
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.53 E-value=2.5e-06 Score=83.32 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=95.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
...+.+.+||++|+||||||+.+....+... ..||..+-.... ..-.+.|+++-.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~----------------t~dvR~ife~aq----- 214 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAK----------------TNDVRDIFEQAQ----- 214 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccc----------------hHHHHHHHHHHH-----
Confidence 3678899999999999999999988422222 556766654433 333444443311
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME 354 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~ 354 (597)
=...+.++|.+|++|.|+.-+ -.+.-.+||...+|..++|-...+.+.+... ..-+.+...
T Consensus 215 ----------~~~~l~krkTilFiDEiHRFN----ksQQD~fLP~VE~G~I~lIGATTENPSFqln-----~aLlSRC~V 275 (554)
T KOG2028|consen 215 ----------NEKSLTKRKTILFIDEIHRFN----KSQQDTFLPHVENGDITLIGATTENPSFQLN-----AALLSRCRV 275 (554)
T ss_pred ----------HHHhhhcceeEEEeHHhhhhh----hhhhhcccceeccCceEEEecccCCCccchh-----HHHHhccce
Confidence 112245789999999996543 2233345666777887776443332222221 111112222
Q ss_pred eecCCCChHHHHHHHHHHhc---cCCC---CCCcc---chHHHHHHHHHhcCCchH
Q 041007 355 IGLGELSEEECRSLFRQIAF---HGRS---SDYRE---KFEPIGRRVVGKCKGLPF 401 (597)
Q Consensus 355 ~~l~~Ls~~es~~Lf~~~~~---~~~~---~~~~~---~~~~~~~~I~~~~~GlPL 401 (597)
+-|++|+.++...++.+..- .... +.+.+ -...+.+-++..|.|-.-
T Consensus 276 fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 89999999999998887432 1111 11111 123456667788888653
No 48
>PF14516 AAA_35: AAA-like domain
Probab=98.52 E-value=5e-05 Score=77.30 Aligned_cols=217 Identities=16% Similarity=0.183 Sum_probs=119.3
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhh
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIR 243 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 243 (597)
+.+..|.|...-+++.+.|.. ....+.|.|+-.+|||+|...+.+. .+..=..++++++........
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~-----------~G~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~ 75 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ-----------PGSYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIF 75 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc-----------CCCEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCccc
Confidence 345567898666677777763 2469999999999999999999884 332223355777765322100
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCc-------hhhHHHHHHHHHHHh-c--CceEEEEEecccCCCCc-chHHH
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSS-------QVEMETVLQYINEFV-Q--GKKVLLVLDDLWWNAYP-RYWEQ 312 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-------~~~~~~~~~~l~~~L-~--~kr~LLVLDdv~~~~~~-~~~~~ 312 (597)
.....+ ...+...+..+++....- ..........+.+.+ . +++.+|+||+++..... ...+.
T Consensus 76 ~~~~~f-------~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~d 148 (331)
T PF14516_consen 76 SDLEQF-------LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADD 148 (331)
T ss_pred CCHHHH-------HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHH
Confidence 000000 033444444444433210 011223344444432 2 68999999999654421 12223
Q ss_pred HHHhhc---CC-C-----CCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCc
Q 041007 313 LMYSLK---SG-S-----EGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYR 382 (597)
Q Consensus 313 l~~~l~---~~-~-----~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~ 382 (597)
+...+. .. . ...++++....+. . ...+.. . ..-+. ..+.|.+|+.+|...|+..+-.. ..
T Consensus 149 F~~~LR~~~~~~~~~~~~~~L~li~~~~t~~-~-~~~~~~--~-SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~ 218 (331)
T PF14516_consen 149 FFGLLRSWYEQRKNNPIWQKLRLILAGSTED-Y-IILDIN--Q-SPFNIGQPIELPDFTPEEVQELAQRYGLE-----FS 218 (331)
T ss_pred HHHHHHHHHHhcccCcccceEEEEEecCccc-c-cccCCC--C-CCcccccceeCCCCCHHHHHHHHHhhhcc-----CC
Confidence 333332 11 1 1122333222211 0 000000 0 11111 12999999999999998876421 11
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHhhhccC
Q 041007 383 EKFEPIGRRVVGKCKGLPFAVKILGSLLRFK 413 (597)
Q Consensus 383 ~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~ 413 (597)
....+.|...+||+|.-+..++..+...
T Consensus 219 ---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 219 ---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2337999999999999999999999654
No 49
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=4.5e-06 Score=86.26 Aligned_cols=198 Identities=12% Similarity=0.092 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|-+.-++.|..++......-...+.+-...+.++|++|+|||++|..+.+. ....... +.++...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~--~~~Cg~C------- 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPD--EPGCGEC------- 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCC--CCCCCCC-------
Confidence 3578999999999999985431000000113457889999999999999998662 1111000 0000000
Q ss_pred hhhhhhcccchHHHHHHHHHHhccC------CCCchhhHHH---HHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHH
Q 041007 246 RDEISVARDRDEIRVAKAILESLKG------SVSSQVEMET---VLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMY 315 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~------~~~~~~~~~~---~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~ 315 (597)
.....+...-.. +.......++ +.+.+... ..+++-++|+|+++..+ ....+.+..
T Consensus 74 -------------~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-~~aanaLLk 139 (394)
T PRK07940 74 -------------RACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-ERAANALLK 139 (394)
T ss_pred -------------HHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-HHHHHHHHH
Confidence 000000000000 0000011122 22211110 12455688899998876 455566777
Q ss_pred hhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHH
Q 041007 316 SLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVG 394 (597)
Q Consensus 316 ~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~ 394 (597)
.+.....++.+|++|.+...... .+...+ .+.+.+++.++..+.+..... .. .+.+..+++
T Consensus 140 ~LEep~~~~~fIL~a~~~~~llp---------TIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~ 201 (394)
T PRK07940 140 AVEEPPPRTVWLLCAPSPEDVLP---------TIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAAR 201 (394)
T ss_pred HhhcCCCCCeEEEEECChHHChH---------HHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHH
Confidence 77666667777777666421110 111112 299999999999988875421 11 345678999
Q ss_pred hcCCchHHHHHH
Q 041007 395 KCKGLPFAVKIL 406 (597)
Q Consensus 395 ~~~GlPLai~~~ 406 (597)
.++|.|.....+
T Consensus 202 ~s~G~~~~A~~l 213 (394)
T PRK07940 202 ASQGHIGRARRL 213 (394)
T ss_pred HcCCCHHHHHHH
Confidence 999999755443
No 50
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4.2e-06 Score=88.96 Aligned_cols=195 Identities=14% Similarity=0.125 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCe-eEEEEecCCCchhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDK-RIWVSASYPRDEIRV 244 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~ 244 (597)
.+++|-+.-++.|...+.... -...+.++|+.|+||||+|+.+++.......... ..+..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r---------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~----- 86 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR---------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT----- 86 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh-----
Confidence 457899999999888776432 3468899999999999999999874211111000 0000010000
Q ss_pred hhhhhhhcccchHHHHHHHHHHh-------ccC-CCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHH
Q 041007 245 ARDEISVARDRDEIRVAKAILES-------LKG-SVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMY 315 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~-------l~~-~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~ 315 (597)
....+... +.. ......+...+.+..... +.+++-++|+|+++... ...++.+..
T Consensus 87 ---------------~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-~~a~naLLk 150 (507)
T PRK06645 87 ---------------NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-KGAFNALLK 150 (507)
T ss_pred ---------------HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-HHHHHHHHH
Confidence 00000000 000 001112222222222111 23567799999998776 567888888
Q ss_pred hhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHH
Q 041007 316 SLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVG 394 (597)
Q Consensus 316 ~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~ 394 (597)
.+......+.+|++|........ .+...+. +++.+++.++....+...+...+... ..+....|++
T Consensus 151 ~LEepp~~~vfI~aTte~~kI~~---------tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~ 217 (507)
T PRK06645 151 TLEEPPPHIIFIFATTEVQKIPA---------TIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAY 217 (507)
T ss_pred HHhhcCCCEEEEEEeCChHHhhH---------HHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Confidence 88776667777665533210000 1111222 89999999999999998875433211 1456678999
Q ss_pred hcCCchHHH
Q 041007 395 KCKGLPFAV 403 (597)
Q Consensus 395 ~~~GlPLai 403 (597)
.++|.+--+
T Consensus 218 ~s~GslR~a 226 (507)
T PRK06645 218 KSEGSARDA 226 (507)
T ss_pred HcCCCHHHH
Confidence 999977433
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.49 E-value=6.6e-06 Score=90.37 Aligned_cols=218 Identities=14% Similarity=0.111 Sum_probs=118.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccC---CeeEEEEecCCC---
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANF---DKRIWVSASYPR--- 239 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~~~~~~--- 239 (597)
+.++|++..+..+...+.. +....+.|+|++|+||||||+.+++.......+ ...-|+.+....
T Consensus 154 ~~iiGqs~~~~~l~~~ia~----------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~ 223 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS----------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW 223 (615)
T ss_pred HhceeCcHHHHHHHHHHhc----------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC
Confidence 4588999999988877742 234679999999999999999998753333333 123455443211
Q ss_pred chhhhhhhhhhhcccchHHHHHHHHHHhccCC------------------CCchhhHHHHHHHHHHHhcCceEEEEEecc
Q 041007 240 DEIRVARDEISVARDRDEIRVAKAILESLKGS------------------VSSQVEMETVLQYINEFVQGKKVLLVLDDL 301 (597)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~------------------~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv 301 (597)
+........+.. .+..........+...+.. .....+ ...+..+.+.++++++.++.|+.
T Consensus 224 d~~~i~~~llg~-~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~ 301 (615)
T TIGR02903 224 DPREVTNPLLGS-VHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYY 301 (615)
T ss_pred CHHHHhHHhcCC-ccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeeccee
Confidence 110000000000 0000001111112221110 000111 23466777788888888886666
Q ss_pred cCCCCcchHHHHHHhhcCCCCCcEEEE--EccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCC
Q 041007 302 WWNAYPRYWEQLMYSLKSGSEGSRILV--TRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRS 378 (597)
Q Consensus 302 ~~~~~~~~~~~l~~~l~~~~~gs~IIv--TtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~ 378 (597)
|..+ ...|+.+...+....+...+++ ||++...... .+... ..+.+.|++.++.+.++.+.+.....
T Consensus 302 ~~~~-~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~---------aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v 371 (615)
T TIGR02903 302 DPDD-PNVPKYIKKLFEEGAPADFVLIGATTRDPEEINP---------ALRSRCAEVFFEPLTPEDIALIVLNAAEKINV 371 (615)
T ss_pred ccCC-cccchhhhhhcccCccceEEEEEeccccccccCH---------HHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 5544 5567777766665555544555 4554311000 11111 22889999999999999997743211
Q ss_pred CCCccchHHHHHHHHHhcCCchHHHHHHHhh
Q 041007 379 SDYREKFEPIGRRVVGKCKGLPFAVKILGSL 409 (597)
Q Consensus 379 ~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~ 409 (597)
.. ..+..+.|.+.+..-+-++..++..
T Consensus 372 -~l---s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 372 -HL---AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred -CC---CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 11 1345566666666557777766544
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=4e-06 Score=88.79 Aligned_cols=213 Identities=16% Similarity=0.178 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+.-...|...+.... -+..+.++|++|+||||+|+.+++......... +.++..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~---------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---~~pc~~-------- 73 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS---------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---VEPCNE-------- 73 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCCCcc--------
Confidence 568999988888888776322 234689999999999999999977311110000 000000
Q ss_pred hhhhhhcccchHHHHHHHHHH-------hccCC-CCchhhHHHHHHHHHH-HhcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILE-------SLKGS-VSSQVEMETVLQYINE-FVQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~-------~l~~~-~~~~~~~~~~~~~l~~-~L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-.....+.. .+... .....+...+.+.+.. -..+++-++|+|+++... ....+.+...
T Consensus 74 ------------c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-~~a~~~LLk~ 140 (472)
T PRK14962 74 ------------CRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-KEAFNALLKT 140 (472)
T ss_pred ------------cHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-HHHHHHHHHH
Confidence 000000000 00000 0011111111111111 122466799999997654 3345666666
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+........+|++|.+...... .+...+ .+.+.+++.++....+...+...+... ..+....|++.
T Consensus 141 LE~p~~~vv~Ilattn~~kl~~---------~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~ 207 (472)
T PRK14962 141 LEEPPSHVVFVLATTNLEKVPP---------TIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKR 207 (472)
T ss_pred HHhCCCcEEEEEEeCChHhhhH---------HHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHH
Confidence 6554445555555543210000 111122 289999999999999888774322211 14567788887
Q ss_pred cCC-chHHHHHHHhhhcc--C-CCHHHHHHHHh
Q 041007 396 CKG-LPFAVKILGSLLRF--K-TSIKEWQSVLD 424 (597)
Q Consensus 396 ~~G-lPLai~~~~~~l~~--~-~~~~~w~~~l~ 424 (597)
++| .+.++..+-.+... . -+.+....++.
T Consensus 208 s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~ 240 (472)
T PRK14962 208 ASGGLRDALTMLEQVWKFSEGKITLETVHEALG 240 (472)
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 865 57777777654321 1 24555555443
No 53
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.48 E-value=2.6e-06 Score=81.22 Aligned_cols=174 Identities=13% Similarity=0.172 Sum_probs=96.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCC--eeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFD--KRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 273 (597)
....+.|+|+.|+|||.|.+.+++ ......+ .++++++ .+....+...+...
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~----------------------~~f~~~~~~~~~~~-- 86 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSA----------------------EEFIREFADALRDG-- 86 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEH----------------------HHHHHHHHHHHHTT--
T ss_pred CCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecH----------------------HHHHHHHHHHHHcc--
Confidence 455689999999999999999999 4443322 3556653 44444444444331
Q ss_pred chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHH-HHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCccc
Q 041007 274 SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQL-MYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTN 351 (597)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l-~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~ 351 (597)
. ...+.+.+. .-=+|+|||++.......|... ...+.. ...|.+||+|+...+........++.+ ....
T Consensus 87 ---~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S-Rl~~ 157 (219)
T PF00308_consen 87 ---E----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS-RLSW 157 (219)
T ss_dssp ---S----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH-HHHC
T ss_pred ---c----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh-hHhh
Confidence 1 122333333 3458899999876644455543 333322 245678999997764322211111000 0111
Q ss_pred cceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 041007 352 MMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGS 408 (597)
Q Consensus 352 ~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 408 (597)
...+++.+++.++-.+++.+.+...+.. --++++.-|++.+.+..-.+..+-.
T Consensus 158 Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 158 GLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp SEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred cchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 1229999999999999999988543322 1255677788887776665554433
No 54
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.48 E-value=4.1e-06 Score=80.76 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=89.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQ 275 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 275 (597)
..+.+.|+|++|+|||+||+.+++. ....-....++++.... .. +
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~----------------------~~-~---------- 85 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLDAASPL----------------------LA-F---------- 85 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEehHHhH----------------------HH-H----------
Confidence 3468899999999999999999884 22211233444432110 00 0
Q ss_pred hhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCc-EEEEEccCCCCCCCcccccccccCcc-c-
Q 041007 276 VEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGS-RILVTRSGGKNGTNMTEIGLGEKNGT-N- 351 (597)
Q Consensus 276 ~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs-~IIvTtR~~~~~~~~~~~~~~~~~~~-~- 351 (597)
... ...-+||+||++..+ ...-..+...+... ..+. .+|+|++....... +. .... .
T Consensus 86 -----------~~~-~~~~~liiDdi~~l~-~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~-----l~-~~L~sr~ 146 (227)
T PRK08903 86 -----------DFD-PEAELYAVDDVERLD-DAQQIALFNLFNRVRAHGQGALLVAGPAAPLALP-----LR-EDLRTRL 146 (227)
T ss_pred -----------hhc-ccCCEEEEeChhhcC-chHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC-----CC-HHHHHHH
Confidence 011 234479999997654 22333344444331 2333 46666664311110 00 0111 1
Q ss_pred --cceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhh
Q 041007 352 --MMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGSLL 410 (597)
Q Consensus 352 --~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l 410 (597)
...+.+.|+++++-..++.+.+-..+. . --.+....|++.+.|++..+..+...+
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v-~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGL-Q---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 123899999998877777765432221 1 124577888999999999887776655
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.48 E-value=3.8e-06 Score=93.14 Aligned_cols=177 Identities=17% Similarity=0.244 Sum_probs=95.3
Q ss_pred CccccchhhHH---HHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNAEKQ---KILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
.+|+|.+..+. .|...+.. .....+.|+|++|+||||||+.+++ ....+|. .+++. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~----------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~--~~~- 89 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA----------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAV--LAG- 89 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc----------CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhh--hhh-
Confidence 46889888774 45566652 2456789999999999999999998 3444431 11111 000
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHh--cCceEEEEEecccCCCCcchHHHHHHhhcCC
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV--QGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG 320 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L--~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~ 320 (597)
.. +...........+ .+++.+|||||++..+ ...++.+...+
T Consensus 90 ---------------i~-----------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-~~qQdaLL~~l--- 133 (725)
T PRK13341 90 ---------------VK-----------------DLRAEVDRAKERLERHGKRTILFIDEVHRFN-KAQQDALLPWV--- 133 (725)
T ss_pred ---------------hH-----------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCC-HHHHHHHHHHh---
Confidence 00 0111111111111 2467899999997665 33444454433
Q ss_pred CCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccCC---CCCCccchHHHHHHHHHhcC
Q 041007 321 SEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGR---SSDYREKFEPIGRRVVGKCK 397 (597)
Q Consensus 321 ~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~---~~~~~~~~~~~~~~I~~~~~ 397 (597)
..+..+++++........... . -..+...+.+.+|+.++...++.+.+.... ......-..+....|++.+.
T Consensus 134 E~g~IiLI~aTTenp~~~l~~-a----L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~ 208 (725)
T PRK13341 134 ENGTITLIGATTENPYFEVNK-A----LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN 208 (725)
T ss_pred cCceEEEEEecCCChHhhhhh-H----hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC
Confidence 235555554333211110000 0 001112289999999999999988764100 00011112456678888888
Q ss_pred CchH
Q 041007 398 GLPF 401 (597)
Q Consensus 398 GlPL 401 (597)
|.--
T Consensus 209 GD~R 212 (725)
T PRK13341 209 GDAR 212 (725)
T ss_pred CCHH
Confidence 8643
No 56
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.45 E-value=7.2e-06 Score=76.50 Aligned_cols=91 Identities=11% Similarity=0.052 Sum_probs=62.7
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf 369 (597)
+.+-++|+||++... ....+.+...+...+..+.+|++|.+...... .+... ..+++.+++.++..+.+
T Consensus 95 ~~~kviiide~~~l~-~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~---------~i~sr~~~~~~~~~~~~~~~~~l 164 (188)
T TIGR00678 95 SGRRVVIIEDAERMN-EAAANALLKTLEEPPPNTLFILITPSPEKLLP---------TIRSRCQVLPFPPLSEEALLQWL 164 (188)
T ss_pred CCeEEEEEechhhhC-HHHHHHHHHHhcCCCCCeEEEEEECChHhChH---------HHHhhcEEeeCCCCCHHHHHHHH
Confidence 556789999997766 55677788888776667777777764411100 11111 22999999999999888
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPF 401 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 401 (597)
.+. + . ..+.+..|++.++|.|.
T Consensus 165 ~~~----g--i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 165 IRQ----G--I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHc----C--C----CHHHHHHHHHHcCCCcc
Confidence 876 1 1 14568899999999885
No 57
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5.4e-06 Score=89.89 Aligned_cols=196 Identities=13% Similarity=0.140 Sum_probs=109.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc--CCeeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN--FDKRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~ 243 (597)
.++||-+.-++.|..++.... -...+.++|+.|+||||+|+.+.+...-... ......-.+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r---------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~------ 80 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR---------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV------ 80 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc------
Confidence 468999998999999987432 2456789999999999999999652110000 00000000000
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhc-----cCCCCchhhHHHHHHHHHHH----hcCceEEEEEecccCCCCcchHHHHH
Q 041007 244 VARDEISVARDRDEIRVAKAILESL-----KGSVSSQVEMETVLQYINEF----VQGKKVLLVLDDLWWNAYPRYWEQLM 314 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l-----~~~~~~~~~~~~~~~~l~~~----L~~kr~LLVLDdv~~~~~~~~~~~l~ 314 (597)
-.....|...- ..........+++.+.+... ..++.-++|||+++..+ ...++.+.
T Consensus 81 --------------C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-~~a~NaLL 145 (618)
T PRK14951 81 --------------CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-NTAFNAML 145 (618)
T ss_pred --------------cHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-HHHHHHHH
Confidence 11111110000 00000011122222222211 12445689999998876 66777788
Q ss_pred HhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHH
Q 041007 315 YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVV 393 (597)
Q Consensus 315 ~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~ 393 (597)
..+......+.+|++|.+...... .+...+ .+++++++.++..+.+.+.+...+... ..+....|+
T Consensus 146 KtLEEPP~~~~fIL~Ttd~~kil~---------TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La 212 (618)
T PRK14951 146 KTLEEPPEYLKFVLATTDPQKVPV---------TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLA 212 (618)
T ss_pred HhcccCCCCeEEEEEECCchhhhH---------HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence 777766667777766644311000 111122 299999999999999988765433221 145678899
Q ss_pred HhcCCchHHHH
Q 041007 394 GKCKGLPFAVK 404 (597)
Q Consensus 394 ~~~~GlPLai~ 404 (597)
+.++|.+--+.
T Consensus 213 ~~s~GslR~al 223 (618)
T PRK14951 213 RAARGSMRDAL 223 (618)
T ss_pred HHcCCCHHHHH
Confidence 99999775443
No 58
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=7.4e-07 Score=86.09 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=59.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC--CchhhhhhhhhhhcccchHHHHHHHHHHhccCCC-
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP--RDEIRVARDEISVARDRDEIRVAKAILESLKGSV- 272 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~- 272 (597)
....++|.|++|+|||||++.++++.... +|+..+|+.+.+. .+. .++++.+...+-...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev----------------~el~~~I~~~~v~~~~ 77 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEV----------------TDMQRSVKGEVIASTF 77 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccH----------------HHHHHHhccEEEEecC
Confidence 45789999999999999999999974433 8999999997766 455 777777733222111
Q ss_pred --Cchh---hHHHHHHHHHHH-hcCceEEEEEeccc
Q 041007 273 --SSQV---EMETVLQYINEF-VQGKKVLLVLDDLW 302 (597)
Q Consensus 273 --~~~~---~~~~~~~~l~~~-L~~kr~LLVLDdv~ 302 (597)
+... -..........+ -.+++.+|++|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 78 DEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Confidence 1111 111222222222 24789999999994
No 59
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=7.9e-06 Score=88.07 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhc-------------------c
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKA-------------------N 226 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~ 226 (597)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+.+...-.. .
T Consensus 16 ~divGq~~v~~~L~~~i~~~~---------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR---------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGR 86 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 468899999999999987432 234678999999999999999976311100 0
Q ss_pred CCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHH-HhcCceEEEEEecccCCC
Q 041007 227 FDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINE-FVQGKKVLLVLDDLWWNA 305 (597)
Q Consensus 227 F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LLVLDdv~~~~ 305 (597)
|...+++..+. .....+...+...+.. -..+++-++|+|+++...
T Consensus 87 ~~d~~ei~~~~----------------------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls 132 (527)
T PRK14969 87 FVDLIEVDAAS----------------------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS 132 (527)
T ss_pred CCceeEeeccc----------------------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC
Confidence 11111111110 0011111111111111 013566799999998766
Q ss_pred CcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccc
Q 041007 306 YPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREK 384 (597)
Q Consensus 306 ~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~ 384 (597)
....+.+...+......+.+|++|.+...... .+...+. +++.+++.++....+.+.+...+.. .
T Consensus 133 -~~a~naLLK~LEepp~~~~fIL~t~d~~kil~---------tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~----~ 198 (527)
T PRK14969 133 -KSAFNAMLKTLEEPPEHVKFILATTDPQKIPV---------TVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP----F 198 (527)
T ss_pred -HHHHHHHHHHHhCCCCCEEEEEEeCChhhCch---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----C
Confidence 45567777777776667777766644311100 1111122 9999999999998888776432211 1
Q ss_pred hHHHHHHHHHhcCCchH-HHHHH
Q 041007 385 FEPIGRRVVGKCKGLPF-AVKIL 406 (597)
Q Consensus 385 ~~~~~~~I~~~~~GlPL-ai~~~ 406 (597)
.......|++.++|.+- |+..+
T Consensus 199 ~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 199 DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 24556889999999775 44444
No 60
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=9.6e-06 Score=85.58 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=110.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhc--------------------
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKA-------------------- 225 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------- 225 (597)
.++||.+.-++.|...+.... -...+.++|+.|+||||+|+.+++. ...
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r---------i~ha~Lf~Gp~G~GKTT~ArilAk~--LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK---------IPQSILLVGASGVGKTTCARIISLC--LNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCceEEEECCCCccHHHHHHHHHHH--HcCcCCCCCCCccccHHHHHHhc
Confidence 468999999998888887432 2458999999999999999988762 111
Q ss_pred -cCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH-hcCceEEEEEecccC
Q 041007 226 -NFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWW 303 (597)
Q Consensus 226 -~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~ 303 (597)
.+..++.++.+.... .++...+.+..... ..++.-++|+|+++.
T Consensus 82 ~~~~Dv~eidaas~~~----------------------------------vddIR~Iie~~~~~P~~~~~KVvIIDEah~ 127 (491)
T PRK14964 82 SNHPDVIEIDAASNTS----------------------------------VDDIKVILENSCYLPISSKFKVYIIDEVHM 127 (491)
T ss_pred cCCCCEEEEecccCCC----------------------------------HHHHHHHHHHHHhccccCCceEEEEeChHh
Confidence 111122222211111 11111122111111 124566899999977
Q ss_pred CCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCc
Q 041007 304 NAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYR 382 (597)
Q Consensus 304 ~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~ 382 (597)
.. ....+.+...+..-.+.+.+|++|........ .+...+. +++.+++.++....+...+...+...
T Consensus 128 Ls-~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~---------tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-- 195 (491)
T PRK14964 128 LS-NSAFNALLKTLEEPAPHVKFILATTEVKKIPV---------TIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-- 195 (491)
T ss_pred CC-HHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH---------HHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--
Confidence 65 55677788888776777877777643310000 1111122 89999999999999988775433221
Q ss_pred cchHHHHHHHHHhcCCchH-HHHHH
Q 041007 383 EKFEPIGRRVVGKCKGLPF-AVKIL 406 (597)
Q Consensus 383 ~~~~~~~~~I~~~~~GlPL-ai~~~ 406 (597)
..+.+..|++.++|.+- ++..+
T Consensus 196 --~~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 196 --DEESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred --CHHHHHHHHHHcCCCHHHHHHHH
Confidence 24566789999999875 33433
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=7.5e-06 Score=87.76 Aligned_cols=197 Identities=14% Similarity=0.167 Sum_probs=110.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|++.-++.|..++.... ....+.++|+.|+||||+|+.+++...-.. |.... +...
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r---------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~---- 75 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK---------LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNS---- 75 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcc----
Confidence 468899999999999886432 246789999999999999999977311111 11100 0000
Q ss_pred hhhhhhcccchHHHHHHHHHHh-------ccCCC-CchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILES-------LKGSV-SSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~-------l~~~~-~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-...+.+... +.+.. ....+...+...+... ..+++-++|+|+++... ...+..+...
T Consensus 76 ------------C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-~~A~NaLLKt 142 (605)
T PRK05896 76 ------------CSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-TSAWNALLKT 142 (605)
T ss_pred ------------cHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-HHHHHHHHHH
Confidence 0111111100 00000 0111122222222211 11334479999997765 5567778877
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+...+..+.+|++|........ .+...+ .+++.+++.++....+...+...+... ..+.+..|++.
T Consensus 143 LEEPp~~tvfIL~Tt~~~KLl~---------TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~l 209 (605)
T PRK05896 143 LEEPPKHVVFIFATTEFQKIPL---------TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADL 209 (605)
T ss_pred HHhCCCcEEEEEECCChHhhhH---------HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHH
Confidence 7666666677666643310000 111112 299999999999998888764322111 14567889999
Q ss_pred cCCchH-HHHHHHh
Q 041007 396 CKGLPF-AVKILGS 408 (597)
Q Consensus 396 ~~GlPL-ai~~~~~ 408 (597)
++|.+- |+..+-.
T Consensus 210 S~GdlR~AlnlLek 223 (605)
T PRK05896 210 ADGSLRDGLSILDQ 223 (605)
T ss_pred cCCcHHHHHHHHHH
Confidence 999664 5555444
No 62
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=8e-06 Score=82.70 Aligned_cols=221 Identities=18% Similarity=0.183 Sum_probs=124.4
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhh
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIR 243 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 243 (597)
.+...+||+.|+..+..++...-. ....+.+-|.|.+|.|||.+...++.+..-...-..++++++..-...
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~-- 219 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA-- 219 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch--
Confidence 457789999999999999975543 235678999999999999999999885322222234567766544444
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcC--ceEEEEEecccCCCCcchHHHHHHhhcC-C
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG--KKVLLVLDDLWWNAYPRYWEQLMYSLKS-G 320 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~--kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~ 320 (597)
..++..|...+........+..+....+.++..+ ..+|+|||..+... ...-..+...|.+ .
T Consensus 220 --------------~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~-tr~~~vLy~lFewp~ 284 (529)
T KOG2227|consen 220 --------------SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLI-TRSQTVLYTLFEWPK 284 (529)
T ss_pred --------------HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHh-hcccceeeeehhccc
Confidence 6677777766622111111114445555555553 36899999984432 1111222222322 3
Q ss_pred CCCcEEEEEccCCCCCCCcccccccccCccccce---eecCCCChHHHHHHHHHHhccCCCC-CCccchHHHHHHHHHhc
Q 041007 321 SEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME---IGLGELSEEECRSLFRQIAFHGRSS-DYREKFEPIGRRVVGKC 396 (597)
Q Consensus 321 ~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~---~~l~~Ls~~es~~Lf~~~~~~~~~~-~~~~~~~~~~~~I~~~~ 396 (597)
-+++++|+..--. ..++.+..++.......+. +...|.+.++..++|..+.-..... ..+..++-.|++++.-.
T Consensus 285 lp~sr~iLiGiAN--slDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 285 LPNSRIILIGIAN--SLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred CCcceeeeeeehh--hhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc
Confidence 3455555432111 1111122222222211111 7889999999999999987432222 22223344455555555
Q ss_pred CCchHHHHHHHhh
Q 041007 397 KGLPFAVKILGSL 409 (597)
Q Consensus 397 ~GlPLai~~~~~~ 409 (597)
|.+--|+.+.-+.
T Consensus 363 GDlRkaLdv~R~a 375 (529)
T KOG2227|consen 363 GDLRKALDVCRRA 375 (529)
T ss_pred hhHHHHHHHHHHH
Confidence 5555666555433
No 63
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.4e-06 Score=84.86 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEE-ecCCCchhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVS-ASYPRDEIRV 244 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~ 244 (597)
.+++|.+.-++.|..++.... -...+.++|++|+||||+|..+++...-...+...-|.. ...+...
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~---------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~--- 83 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR---------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE--- 83 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC---------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC---
Confidence 568899999999999887432 234588999999999999999877321111111000110 0000000
Q ss_pred hhhhhhhcccchHHHHHHHHHHhccC-----CCCchhhHHHHHHHHHHHh-----cCceEEEEEecccCCCCcchHHHHH
Q 041007 245 ARDEISVARDRDEIRVAKAILESLKG-----SVSSQVEMETVLQYINEFV-----QGKKVLLVLDDLWWNAYPRYWEQLM 314 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~~-----~~~~~~~~~~~~~~l~~~L-----~~kr~LLVLDdv~~~~~~~~~~~l~ 314 (597)
-...+.+...... ........+++.+ +.+.+ .+++-++|+|+++... ...++.+.
T Consensus 84 -------------c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~-~~~~~~LL 148 (397)
T PRK14955 84 -------------CESCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLS-IAAFNAFL 148 (397)
T ss_pred -------------CHHHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCC-HHHHHHHH
Confidence 0111111110000 0000111222222 22222 2456688999997765 45677888
Q ss_pred HhhcCCCCCcEEEEEccCCCCCCCcccccccccCccc----cce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHH
Q 041007 315 YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTN----MME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIG 389 (597)
Q Consensus 315 ~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~----~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~ 389 (597)
..+......+.+|++|.... .+.. .+. +++.+++.++....+...+-..+.. -..+.+
T Consensus 149 k~LEep~~~t~~Il~t~~~~-------------kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~----i~~~al 211 (397)
T PRK14955 149 KTLEEPPPHAIFIFATTELH-------------KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS----VDADAL 211 (397)
T ss_pred HHHhcCCCCeEEEEEeCChH-------------HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHH
Confidence 88776666777766653321 2211 111 8999999999998888776322211 125577
Q ss_pred HHHHHhcCCchH-HHHHH
Q 041007 390 RRVVGKCKGLPF-AVKIL 406 (597)
Q Consensus 390 ~~I~~~~~GlPL-ai~~~ 406 (597)
..|++.++|.+- ++..+
T Consensus 212 ~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 212 QLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 899999999775 44433
No 64
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.36 E-value=9.5e-06 Score=76.55 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=70.9
Q ss_pred ccCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 162 VIDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 162 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
.+....++|-|.+++.|.+.....-. .....-+.+||..|+|||+|++.+.+. ....= . --|.+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~------G~pannvLL~G~rGtGKSSlVkall~~--y~~~G-L-RlIev~k---- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ------GLPANNVLLWGARGTGKSSLVKALLNE--YADQG-L-RLIEVSK---- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc------CCCCcceEEecCCCCCHHHHHHHHHHH--HhhcC-c-eEEEECH----
Confidence 45567899999999999876654433 224567889999999999999999883 22211 1 1122211
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS 319 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~ 319 (597)
....++..+.+.++. ...+|+|++||+--.........+...|..
T Consensus 89 -------------------------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 89 -------------------------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred -------------------------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 111223334444442 357999999999655555667777777754
No 65
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.36 E-value=1.5e-05 Score=82.44 Aligned_cols=184 Identities=13% Similarity=0.126 Sum_probs=107.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhh--ccCC---------------
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVK--ANFD--------------- 228 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~--------------- 228 (597)
..++|.+..++.|..++.... -...+.++|++|+|||++|+.+.....-. ..+.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~---------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 84 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR---------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGS 84 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 467999999999999997432 24578899999999999998887631100 0110
Q ss_pred --eeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCC
Q 041007 229 --KRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNA 305 (597)
Q Consensus 229 --~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~ 305 (597)
..+++..... ....+...+...+... ..+++-++|+|++....
T Consensus 85 ~~~~~~~~~~~~----------------------------------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~ 130 (355)
T TIGR02397 85 SLDVIEIDAASN----------------------------------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS 130 (355)
T ss_pred CCCEEEeecccc----------------------------------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC
Confidence 0111111000 0011112222222111 12455688999986654
Q ss_pred CcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccc-cceeecCCCChHHHHHHHHHHhccCCCCCCccc
Q 041007 306 YPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTN-MMEIGLGELSEEECRSLFRQIAFHGRSSDYREK 384 (597)
Q Consensus 306 ~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~ 384 (597)
....+.+...+......+.+|++|.+...... .+.. ...+++.+++.++..+++...+-..+...
T Consensus 131 -~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~---------~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---- 196 (355)
T TIGR02397 131 -KSAFNALLKTLEEPPEHVVFILATTEPHKIPA---------TILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---- 196 (355)
T ss_pred -HHHHHHHHHHHhCCccceeEEEEeCCHHHHHH---------HHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----
Confidence 34566677777655566777777644310000 1111 12288999999999999888764322211
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 041007 385 FEPIGRRVVGKCKGLPFAVKIL 406 (597)
Q Consensus 385 ~~~~~~~I~~~~~GlPLai~~~ 406 (597)
..+.+..|++.++|.|..+...
T Consensus 197 ~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 197 EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred CHHHHHHHHHHcCCChHHHHHH
Confidence 1457788999999998765444
No 66
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1e-05 Score=86.64 Aligned_cols=195 Identities=11% Similarity=0.115 Sum_probs=109.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.++||-+.-++.|..++.... -...+.++|+.|+||||+|+.+.+..--...+.. -++..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~---------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~-------- 75 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY---------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA---NPCND-------- 75 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC---------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc---ccCCC--------
Confidence 468999999999999997432 2346789999999999999998773111111100 00000
Q ss_pred hhhhhhcccchHHHHHHHHHHh-------ccC-CCCchhhHHHHHHHHHH-HhcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILES-------LKG-SVSSQVEMETVLQYINE-FVQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~-------l~~-~~~~~~~~~~~~~~l~~-~L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-.....|... +.. ......+...+.+.+.- -..++.-++|+|+++... ....+.+...
T Consensus 76 ------------C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-~~a~naLLk~ 142 (509)
T PRK14958 76 ------------CENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-GHSFNALLKT 142 (509)
T ss_pred ------------CHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-HHHHHHHHHH
Confidence 0000000000 000 00011111112211111 112556689999998776 5677778887
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+......+++|++|.+...... .+...+. +++.+++.++....+.+.+...+... ..+....|++.
T Consensus 143 LEepp~~~~fIlattd~~kl~~---------tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~ 209 (509)
T PRK14958 143 LEEPPSHVKFILATTDHHKLPV---------TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARA 209 (509)
T ss_pred HhccCCCeEEEEEECChHhchH---------HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHH
Confidence 7776677877776644311000 1111122 89999999998887777664332211 13456789999
Q ss_pred cCCchHHH-HHH
Q 041007 396 CKGLPFAV-KIL 406 (597)
Q Consensus 396 ~~GlPLai-~~~ 406 (597)
++|.+--+ ..+
T Consensus 210 s~GslR~al~lL 221 (509)
T PRK14958 210 ANGSVRDALSLL 221 (509)
T ss_pred cCCcHHHHHHHH
Confidence 99987544 444
No 67
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.33 E-value=1.2e-05 Score=84.95 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=100.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccC--CeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANF--DKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
...+.|+|..|+|||+|++.+++. ..... ..+++++. ..+...+...+....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~~----------------------~~f~~~~~~~l~~~~-- 194 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMSG----------------------DEFARKAVDILQKTH-- 194 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH----------------------HHHHHHHHHHHHHhh--
Confidence 456899999999999999999883 33222 23445543 444555554443210
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchH-HHHHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCcccc
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYW-EQLMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM 352 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~-~~l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~ 352 (597)
.....+.+.+. ..-+|||||++.......+ +.+...+.. ...+..||+|+...+.......-++.+ .....
T Consensus 195 -----~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S-R~~~G 267 (450)
T PRK14087 195 -----KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT-RFNMG 267 (450)
T ss_pred -----hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH-HHhCC
Confidence 11222333333 3448899999765422233 334444433 234557888877653211100000000 00111
Q ss_pred ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 041007 353 MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGS 408 (597)
Q Consensus 353 ~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 408 (597)
..+.+.+++.++-.+++.+.+-..+.. ..-..++..-|++.++|.|-.+.-+..
T Consensus 268 l~~~L~~pd~e~r~~iL~~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 268 LSIAIQKLDNKTATAIIKKEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred ceeccCCcCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 227899999999999999988532210 112256788999999999987765543
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=2.1e-05 Score=85.63 Aligned_cols=197 Identities=11% Similarity=0.091 Sum_probs=112.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCC--eeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFD--KRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~ 243 (597)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++......... ...+-.+..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr---------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~------ 88 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR---------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV------ 88 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc------
Confidence 468999999999999997432 245789999999999999999987421111100 000000000
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccC--------CCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHH
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKG--------SVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLM 314 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~--------~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~ 314 (597)
-.....|...-.. ......+..++.+.+... ..+++-++|+|+++... ....+.+.
T Consensus 89 --------------c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-~~a~naLL 153 (598)
T PRK09111 89 --------------GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-TAAFNALL 153 (598)
T ss_pred --------------cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-HHHHHHHH
Confidence 0111111111100 001112222222222211 12455689999997766 45677788
Q ss_pred HhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHH
Q 041007 315 YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVV 393 (597)
Q Consensus 315 ~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~ 393 (597)
..+..-..++.+|++|........ .+...+. +++.+++.++....+.+.+...+... ..+....|+
T Consensus 154 KtLEePp~~~~fIl~tte~~kll~---------tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa 220 (598)
T PRK09111 154 KTLEEPPPHVKFIFATTEIRKVPV---------TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIA 220 (598)
T ss_pred HHHHhCCCCeEEEEEeCChhhhhH---------HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence 777776677777766633210000 1112222 89999999999999988774332211 145678899
Q ss_pred HhcCCchHHHHH
Q 041007 394 GKCKGLPFAVKI 405 (597)
Q Consensus 394 ~~~~GlPLai~~ 405 (597)
+.++|.+.-+..
T Consensus 221 ~~a~Gdlr~al~ 232 (598)
T PRK09111 221 RAAEGSVRDGLS 232 (598)
T ss_pred HHcCCCHHHHHH
Confidence 999998865543
No 69
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2.1e-05 Score=84.79 Aligned_cols=199 Identities=14% Similarity=0.190 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|-+..++.|...+.... -...+.++|+.|+||||+|+.+.+...-....... .++.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r---------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~---- 75 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR---------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNT---- 75 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC---------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcc----
Confidence 467899888888888887432 24678899999999999999998742111100000 0000
Q ss_pred hhhhhhcccchHHHHHHHHHHhcc-------C-CCCchhhHHHHHHHHHH-HhcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILESLK-------G-SVSSQVEMETVLQYINE-FVQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~-------~-~~~~~~~~~~~~~~l~~-~L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-...+.|..... . ......+...+.+.+.. -..+++-++|||+++..+ ....+.+...
T Consensus 76 ------------C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-~~a~naLLk~ 142 (624)
T PRK14959 76 ------------CEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-REAFNALLKT 142 (624)
T ss_pred ------------cHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-HHHHHHHHHH
Confidence 001111111000 0 00011111222222211 123566799999998776 5566777777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+........+|++|........ .+...+ .+++.+++.++....+...+...+... ..+.+..|++.
T Consensus 143 LEEP~~~~ifILaTt~~~kll~---------TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~ 209 (624)
T PRK14959 143 LEEPPARVTFVLATTEPHKFPV---------TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARR 209 (624)
T ss_pred hhccCCCEEEEEecCChhhhhH---------HHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHH
Confidence 7654456666666654311100 011111 289999999999999888764332211 24567889999
Q ss_pred cCCch-HHHHHHHhhh
Q 041007 396 CKGLP-FAVKILGSLL 410 (597)
Q Consensus 396 ~~GlP-Lai~~~~~~l 410 (597)
++|.+ .|+..+..++
T Consensus 210 s~GdlR~Al~lLeqll 225 (624)
T PRK14959 210 AAGSVRDSMSLLGQVL 225 (624)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 99954 6777776554
No 70
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=2.3e-05 Score=88.20 Aligned_cols=192 Identities=11% Similarity=0.074 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....... .|...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r---------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C------- 75 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR---------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC------- 75 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC---------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc-------
Confidence 468999999999999997432 23468899999999999999997742111111000 00000
Q ss_pred hhhhhhcccchHHHHHHHHHHh---------ccC-CCCchhhHHHHHHHHH-HHhcCceEEEEEecccCCCCcchHHHHH
Q 041007 246 RDEISVARDRDEIRVAKAILES---------LKG-SVSSQVEMETVLQYIN-EFVQGKKVLLVLDDLWWNAYPRYWEQLM 314 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~---------l~~-~~~~~~~~~~~~~~l~-~~L~~kr~LLVLDdv~~~~~~~~~~~l~ 314 (597)
...+.+... +.. .....++...+.+.+. .-..++.-++|||+++... ....+.|+
T Consensus 76 -------------~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-~~a~NaLL 141 (824)
T PRK07764 76 -------------DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-PQGFNALL 141 (824)
T ss_pred -------------HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-HHHHHHHH
Confidence 000000000 000 0001111222221111 1123556689999998877 66778888
Q ss_pred HhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHH
Q 041007 315 YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVV 393 (597)
Q Consensus 315 ~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~ 393 (597)
..+..-...+.+|++|.+...... .+...+. |++.+++.++..+++.+.+-..+... ..+....|+
T Consensus 142 K~LEEpP~~~~fIl~tt~~~kLl~---------TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i----d~eal~lLa 208 (824)
T PRK07764 142 KIVEEPPEHLKFIFATTEPDKVIG---------TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV----EPGVLPLVI 208 (824)
T ss_pred HHHhCCCCCeEEEEEeCChhhhhH---------HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence 888877777777766643310000 1111222 99999999999988887663322211 144567899
Q ss_pred HhcCCchHHH
Q 041007 394 GKCKGLPFAV 403 (597)
Q Consensus 394 ~~~~GlPLai 403 (597)
+.++|.+..+
T Consensus 209 ~~sgGdlR~A 218 (824)
T PRK07764 209 RAGGGSVRDS 218 (824)
T ss_pred HHcCCCHHHH
Confidence 9999988433
No 71
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=4e-05 Score=79.62 Aligned_cols=186 Identities=11% Similarity=0.171 Sum_probs=104.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhh------ccCCeeEEEEecCCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVK------ANFDKRIWVSASYPR 239 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------~~F~~~~wv~~~~~~ 239 (597)
.+++|.+...+.+...+.... -.+.+.++|++|+|||++|..+.+..... ..|...+ +......
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~---------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~ 86 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH---------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAAS 86 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEecccc
Confidence 457899999999999997432 34588999999999999999997731110 0111111 0000000
Q ss_pred chhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC
Q 041007 240 DEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS 319 (597)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~ 319 (597)
. .+ ......+++.+... -..+++-++++|+++... ...++.+...+..
T Consensus 87 ~--------------~~-~~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~-~~~~~~ll~~le~ 134 (367)
T PRK14970 87 N--------------NS-VDDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLS-SAAFNAFLKTLEE 134 (367)
T ss_pred C--------------CC-HHHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcC-HHHHHHHHHHHhC
Confidence 0 00 11111111111000 012455689999996554 3456667666655
Q ss_pred CCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCC
Q 041007 320 GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKG 398 (597)
Q Consensus 320 ~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G 398 (597)
....+.+|+++........ .+...+ .+++.++++++....+...+...+... ..+.+..|+..++|
T Consensus 135 ~~~~~~~Il~~~~~~kl~~---------~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~g 201 (367)
T PRK14970 135 PPAHAIFILATTEKHKIIP---------TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADG 201 (367)
T ss_pred CCCceEEEEEeCCcccCCH---------HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCC
Confidence 4455666665543311100 111111 289999999999988888764332211 14577889999998
Q ss_pred chH-HHHHH
Q 041007 399 LPF-AVKIL 406 (597)
Q Consensus 399 lPL-ai~~~ 406 (597)
.+- ++..+
T Consensus 202 dlr~~~~~l 210 (367)
T PRK14970 202 ALRDALSIF 210 (367)
T ss_pred CHHHHHHHH
Confidence 665 43433
No 72
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.28 E-value=8.6e-06 Score=84.34 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=98.8
Q ss_pred cCCCccccchhhHHHHHHHhhCCCCCC---cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 163 IDPLEFHGRNAEKQKILQLLKGESSDE---ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 163 ~~~~~~vGR~~e~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
+....+.|++..+++|.+.+...-... ..-+-..++-+.|+|++|+|||+||+.+++. ....| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch--
Confidence 334568999999999988875321100 0000123566999999999999999999983 33332 22111
Q ss_pred chhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC----------cch
Q 041007 240 DEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY----------PRY 309 (597)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~----------~~~ 309 (597)
..+..... + .....+...+...-...+.+|+||+++.... ...
T Consensus 190 ------------------~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~ 242 (364)
T TIGR01242 190 ------------------SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREV 242 (364)
T ss_pred ------------------HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHH
Confidence 11111100 0 0001111112222234678999999864310 111
Q ss_pred HHHHHHhh---cC--CCCCcEEEEEccCCCCCCCcccccccccCccc-cceeecCCCChHHHHHHHHHHhccCCCCCCcc
Q 041007 310 WEQLMYSL---KS--GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTN-MMEIGLGELSEEECRSLFRQIAFHGRSSDYRE 383 (597)
Q Consensus 310 ~~~l~~~l---~~--~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~ 383 (597)
...+...+ .. ...+..||.||........ .+. .... ...+.+.+.+.++..++|..+....... ...
T Consensus 243 ~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~----al~--r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~ 315 (364)
T TIGR01242 243 QRTLMQLLAELDGFDPRGNVKVIAATNRPDILDP----ALL--RPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDV 315 (364)
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEEecCChhhCCh----hhc--CcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccC
Confidence 22232222 21 2346678888765411100 000 0000 1128899999999999999877432211 111
Q ss_pred chHHHHHHHHHhcCCch
Q 041007 384 KFEPIGRRVVGKCKGLP 400 (597)
Q Consensus 384 ~~~~~~~~I~~~~~GlP 400 (597)
. ...+++.+.|..
T Consensus 316 ~----~~~la~~t~g~s 328 (364)
T TIGR01242 316 D----LEAIAKMTEGAS 328 (364)
T ss_pred C----HHHHHHHcCCCC
Confidence 2 356777777654
No 73
>PRK09087 hypothetical protein; Validated
Probab=98.28 E-value=8.7e-06 Score=77.93 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=87.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
.+.+.|+|++|+|||+|++.++... ...+++.. .+...++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~----------------------~~~~~~~~---------- 84 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN----------------------EIGSDAAN---------- 84 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH----------------------HcchHHHH----------
Confidence 4679999999999999999988732 11244321 00011111
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCcccccee
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEI 355 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~ 355 (597)
.+.+ -+|+|||++.... .-+.+...+.. ...|..+|+|++..+........++.+ .......+
T Consensus 85 -----------~~~~--~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~ 148 (226)
T PRK09087 85 -----------AAAE--GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVV 148 (226)
T ss_pred -----------hhhc--CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH-HHhCCcee
Confidence 0111 2788899965321 11234433332 234678999988653322110000000 01111229
Q ss_pred ecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 041007 356 GLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGS 408 (597)
Q Consensus 356 ~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 408 (597)
++++++.++-.+++.+.+....-. --+++..-|++.+.|..-++..+..
T Consensus 149 ~l~~pd~e~~~~iL~~~~~~~~~~----l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 149 EIGEPDDALLSQVIFKLFADRQLY----VDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999999888542211 1256778899999988877765433
No 74
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.5e-05 Score=85.73 Aligned_cols=196 Identities=12% Similarity=0.103 Sum_probs=110.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+++. +.......-+-.+ ..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~---------i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~~~~~~~~c----~~---- 76 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR---------VAHAYLFTGPRGVGKTSTARILAKA--VNCTTNDPKGRPC----GT---- 76 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC---------CceEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCC----cc----
Confidence 468999999999998887432 2356789999999999999999873 2111000000000 00
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCC--------CCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGS--------VSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~--------~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
....+.+....... .....+..++.+.+... ..+++-++|||+++... ....+.+...
T Consensus 77 ------------c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-~~a~naLLk~ 143 (585)
T PRK14950 77 ------------CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-TAAFNALLKT 143 (585)
T ss_pred ------------CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-HHHHHHHHHH
Confidence 11122222111110 01111222222222211 12456799999997665 4456777777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+......+.+|+++.+...... .+... ..+.+.+++..+....+...+...+... ..+.+..|++.
T Consensus 144 LEepp~~tv~Il~t~~~~kll~---------tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~ 210 (585)
T PRK14950 144 LEEPPPHAIFILATTEVHKVPA---------TILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARA 210 (585)
T ss_pred HhcCCCCeEEEEEeCChhhhhH---------HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHH
Confidence 7665566777766643310000 11111 2288999999999988888764332211 14567899999
Q ss_pred cCCchHHHHHH
Q 041007 396 CKGLPFAVKIL 406 (597)
Q Consensus 396 ~~GlPLai~~~ 406 (597)
++|.+..+...
T Consensus 211 s~Gdlr~al~~ 221 (585)
T PRK14950 211 ATGSMRDAENL 221 (585)
T ss_pred cCCCHHHHHHH
Confidence 99988655433
No 75
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.26 E-value=1.4e-05 Score=90.93 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.++.++++.|.... ...+.++|++|+|||++|+.+++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~----------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR----------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC----------cCceeEECCCCCCHHHHHHHHHHH
Confidence 568999999999999997433 346679999999999999999883
No 76
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=4.1e-05 Score=82.87 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+++...-..... +-.+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r---------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C------- 73 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR---------INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC------- 73 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc-------
Confidence 468999999999999997432 234578999999999999999987311111100 0000000
Q ss_pred hhhhhhcccchHHHHHHHHHHh---------ccC-CCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHH
Q 041007 246 RDEISVARDRDEIRVAKAILES---------LKG-SVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLM 314 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~---------l~~-~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~ 314 (597)
.....+... +.. .....++..++.+.+... ..+++-++|+|+++... ....+.++
T Consensus 74 -------------~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-~~A~NALL 139 (584)
T PRK14952 74 -------------ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-TAGFNALL 139 (584)
T ss_pred -------------HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-HHHHHHHH
Confidence 000000000 000 001112222222222211 12456689999998776 66777788
Q ss_pred HhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHH
Q 041007 315 YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVV 393 (597)
Q Consensus 315 ~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~ 393 (597)
..+......+.+|++|........ .+...+ .+++.+++.++..+.+...+...+... ..+....|+
T Consensus 140 K~LEEpp~~~~fIL~tte~~kll~---------TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i----~~~al~~Ia 206 (584)
T PRK14952 140 KIVEEPPEHLIFIFATTEPEKVLP---------TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV----DDAVYPLVI 206 (584)
T ss_pred HHHhcCCCCeEEEEEeCChHhhHH---------HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence 888776677777766643310000 111112 299999999999988887764332211 134567788
Q ss_pred HhcCCchH-HHHHHHh
Q 041007 394 GKCKGLPF-AVKILGS 408 (597)
Q Consensus 394 ~~~~GlPL-ai~~~~~ 408 (597)
+.++|.+- ++..+-.
T Consensus 207 ~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 207 RAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHcCCCHHHHHHHHHH
Confidence 99999774 4444433
No 77
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=3e-06 Score=85.42 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=58.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC--chhhhhhhhhhhcccchHHHHHHHHHHhccCCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR--DEIRVARDEISVARDRDEIRVAKAILESLKGSVS 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 273 (597)
......|+|++|+||||||+.++++...+ +|+.++||.+.+.. .. .++++.+...+-....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EV----------------tdiqrsIlg~vv~st~ 230 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEV----------------TDMQRSVKGEVVASTF 230 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHH----------------HHHHHHhcCcEEEECC
Confidence 45688999999999999999999964333 89999999998876 33 5666666532221111
Q ss_pred -c-hhh----HHHHHHHHHHH-hcCceEEEEEeccc
Q 041007 274 -S-QVE----METVLQYINEF-VQGKKVLLVLDDLW 302 (597)
Q Consensus 274 -~-~~~----~~~~~~~l~~~-L~~kr~LLVLDdv~ 302 (597)
. ... .......-+.+ -.++++||++|++.
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 1 111 01112222222 25789999999994
No 78
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.22 E-value=3.1e-05 Score=75.57 Aligned_cols=204 Identities=17% Similarity=0.180 Sum_probs=118.3
Q ss_pred hhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhh--c--cCCeeEEEEecCCCchhhhhhhh
Q 041007 173 AEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVK--A--NFDKRIWVSASYPRDEIRVARDE 248 (597)
Q Consensus 173 ~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~--~F~~~~wv~~~~~~~~~~~~~~~ 248 (597)
.-+++|.++|.... ....+.+.|+|.+|+|||++++.+.+..-.. . .--.++.|.+...++.
T Consensus 44 ~~L~~L~~Ll~~P~-------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~------- 109 (302)
T PF05621_consen 44 EALDRLEELLEYPK-------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE------- 109 (302)
T ss_pred HHHHHHHHHHhCCc-------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh-------
Confidence 34566666666443 3567889999999999999999998641111 0 1113566677677777
Q ss_pred hhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcC-ceEEEEEecccCCC--CcchHHHHHHhhc---CCCC
Q 041007 249 ISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG-KKVLLVLDDLWWNA--YPRYWEQLMYSLK---SGSE 322 (597)
Q Consensus 249 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~-kr~LLVLDdv~~~~--~~~~~~~l~~~l~---~~~~ 322 (597)
..++..|+.+++.+.........+.......++. +--+||+|++++.- ....-..+...+. +.-.
T Consensus 110 ---------~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 110 ---------RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred ---------HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 9999999999999876665666655555555653 34589999997642 1112222333332 2223
Q ss_pred CcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChH-HHHHHHHHHh--ccCCCCCCccchHHHHHHHHHhcCC
Q 041007 323 GSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEE-ECRSLFRQIA--FHGRSSDYREKFEPIGRRVVGKCKG 398 (597)
Q Consensus 323 gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~-es~~Lf~~~~--~~~~~~~~~~~~~~~~~~I~~~~~G 398 (597)
=+-|.+-|+........+ .+.++... +.+.+...+ +...|+.... ..-+. ...-...+++..|...++|
T Consensus 181 ipiV~vGt~~A~~al~~D------~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G 253 (302)
T PF05621_consen 181 IPIVGVGTREAYRALRTD------PQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEG 253 (302)
T ss_pred CCeEEeccHHHHHHhccC------HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCC
Confidence 344555555432111110 02222222 566666544 4455554432 11111 1112346789999999999
Q ss_pred chHHHHHH
Q 041007 399 LPFAVKIL 406 (597)
Q Consensus 399 lPLai~~~ 406 (597)
+.=-+..+
T Consensus 254 ~iG~l~~l 261 (302)
T PF05621_consen 254 LIGELSRL 261 (302)
T ss_pred chHHHHHH
Confidence 87655433
No 79
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=9.6e-05 Score=78.86 Aligned_cols=192 Identities=11% Similarity=0.068 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCe-eEEEEecCCCchhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDK-RIWVSASYPRDEIRV 244 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~ 244 (597)
.+++|-+.-.+.|...+.... -.....++|+.|+||||+|+.+.+..--....+. -+-.|
T Consensus 14 deiiGqe~v~~~L~~~I~~gr---------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C---------- 74 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR---------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC---------- 74 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC---------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc----------
Confidence 468999999999999987432 2456789999999999999988663100000000 00000
Q ss_pred hhhhhhhcccchHHHHHHHHHHhcc-----CCCCchhhHHHHHHHHHHH----hcCceEEEEEecccCCCCcchHHHHHH
Q 041007 245 ARDEISVARDRDEIRVAKAILESLK-----GSVSSQVEMETVLQYINEF----VQGKKVLLVLDDLWWNAYPRYWEQLMY 315 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~-----~~~~~~~~~~~~~~~l~~~----L~~kr~LLVLDdv~~~~~~~~~~~l~~ 315 (597)
.....+..... .........+.+.+.+... ..+++-++|+|+++..+ ....+.+..
T Consensus 75 --------------~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-~~A~NALLK 139 (535)
T PRK08451 75 --------------IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-KEAFNALLK 139 (535)
T ss_pred --------------HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-HHHHHHHHH
Confidence 00000000000 0000000122222222110 12456689999998776 566777877
Q ss_pred hhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHH
Q 041007 316 SLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVG 394 (597)
Q Consensus 316 ~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~ 394 (597)
.+...+..+.+|++|.+...... .+...+ .+++.+++.++....+.+.+...+... ..+.+..|++
T Consensus 140 ~LEEpp~~t~FIL~ttd~~kL~~---------tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~ 206 (535)
T PRK08451 140 TLEEPPSYVKFILATTDPLKLPA---------TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILAR 206 (535)
T ss_pred HHhhcCCceEEEEEECChhhCch---------HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Confidence 77766677787777755311110 111122 299999999999998887764333211 2456788999
Q ss_pred hcCCchHHHH
Q 041007 395 KCKGLPFAVK 404 (597)
Q Consensus 395 ~~~GlPLai~ 404 (597)
.++|.+--+.
T Consensus 207 ~s~GdlR~al 216 (535)
T PRK08451 207 SGNGSLRDTL 216 (535)
T ss_pred HcCCcHHHHH
Confidence 9999885443
No 80
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.17 E-value=2.3e-05 Score=75.30 Aligned_cols=190 Identities=16% Similarity=0.099 Sum_probs=115.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeE-EEEecCCCchhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRI-WVSASYPRDEIRV 244 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~ 244 (597)
.+++|.+..++.|...+.. ...+....+||+|.|||+-|..+++..--.+-|++.+ -.++|.....
T Consensus 36 de~~gQe~vV~~L~~a~~~----------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi--- 102 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR----------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI--- 102 (346)
T ss_pred HhhcchHHHHHHHHHHHhh----------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc---
Confidence 5688999999999999985 2478999999999999999998887422234454433 2333332222
Q ss_pred hhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhc--Cce-EEEEEecccCCCCcchHHHHHHhhcCCC
Q 041007 245 ARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ--GKK-VLLVLDDLWWNAYPRYWEQLMYSLKSGS 321 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~--~kr-~LLVLDdv~~~~~~~~~~~l~~~l~~~~ 321 (597)
. +.+. ...+.+.+......... -++ -++|||+++.+. .+.|..+...+....
T Consensus 103 -------------s-vvr~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-sdaq~aLrr~mE~~s 157 (346)
T KOG0989|consen 103 -------------S-VVRE----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-SDAQAALRRTMEDFS 157 (346)
T ss_pred -------------c-chhh----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhh-HHHHHHHHHHHhccc
Confidence 0 0000 00011111111100000 123 488899998887 789999999998877
Q ss_pred CCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCc-
Q 041007 322 EGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGL- 399 (597)
Q Consensus 322 ~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl- 399 (597)
..++.|+.+..-.+... .+...+. +..++|.+++...-+...+..++.... .+..+.|++.++|.
T Consensus 158 ~~trFiLIcnylsrii~---------pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 158 RTTRFILICNYLSRIIR---------PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDL 224 (346)
T ss_pred cceEEEEEcCChhhCCh---------HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcH
Confidence 77776655443211110 1222233 999999999999888887754443322 45668899999984
Q ss_pred hHHHHHH
Q 041007 400 PFAVKIL 406 (597)
Q Consensus 400 PLai~~~ 406 (597)
--|+..+
T Consensus 225 R~Ait~L 231 (346)
T KOG0989|consen 225 RRAITTL 231 (346)
T ss_pred HHHHHHH
Confidence 4444444
No 81
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=7.1e-05 Score=81.65 Aligned_cols=202 Identities=12% Similarity=0.134 Sum_probs=108.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe-cCCCchhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA-SYPRDEIRV 244 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~-~~~~~~~~~ 244 (597)
.+++|.+.-+..|..++.... -...+.++|+.|+||||+|+.+.+...-...++...|..- ..+...
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r---------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~--- 83 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR---------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE--- 83 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc---
Confidence 468999999999999887432 2345889999999999999998773211111110011100 000000
Q ss_pred hhhhhhhcccchHHHHHHHHHHhccC-----CCCchhhHHHHHHHHHHH----hcCceEEEEEecccCCCCcchHHHHHH
Q 041007 245 ARDEISVARDRDEIRVAKAILESLKG-----SVSSQVEMETVLQYINEF----VQGKKVLLVLDDLWWNAYPRYWEQLMY 315 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~~-----~~~~~~~~~~~~~~l~~~----L~~kr~LLVLDdv~~~~~~~~~~~l~~ 315 (597)
-...+.+...-.. ........+++...+... ..+++-++|+|+++... ....+.+..
T Consensus 84 -------------C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-~~a~naLLK 149 (620)
T PRK14954 84 -------------CESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-TAAFNAFLK 149 (620)
T ss_pred -------------CHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-HHHHHHHHH
Confidence 1111111110000 000111122222222221 23455688999997765 445677777
Q ss_pred hhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHH
Q 041007 316 SLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVG 394 (597)
Q Consensus 316 ~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~ 394 (597)
.+..-...+.+|++|........ .+...+ .+++.+++.++....+.+.+...+... ..+.++.|++
T Consensus 150 ~LEePp~~tv~IL~t~~~~kLl~---------TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~ 216 (620)
T PRK14954 150 TLEEPPPHAIFIFATTELHKIPA---------TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIAR 216 (620)
T ss_pred HHhCCCCCeEEEEEeCChhhhhH---------HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Confidence 77666566666655533210000 111112 299999999999888887664322111 1456788999
Q ss_pred hcCCchH-HHHHH
Q 041007 395 KCKGLPF-AVKIL 406 (597)
Q Consensus 395 ~~~GlPL-ai~~~ 406 (597)
.++|..- ++..+
T Consensus 217 ~s~Gdlr~al~eL 229 (620)
T PRK14954 217 KAQGSMRDAQSIL 229 (620)
T ss_pred HhCCCHHHHHHHH
Confidence 9999554 44443
No 82
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=9.2e-05 Score=78.39 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc----CCeeEEE-----Eec
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN----FDKRIWV-----SAS 236 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv-----~~~ 236 (597)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+.+...-... -.+..-. ...
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~---------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~ 87 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR---------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSG 87 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcC
Confidence 568999999999999997432 2456889999999999999998763111000 0000000 000
Q ss_pred CCCchhhhhhhhhhhcccchHHHHHHHHHHhccC-CCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHH
Q 041007 237 YPRDEIRVARDEISVARDRDEIRVAKAILESLKG-SVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLM 314 (597)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~ 314 (597)
...+. ..+.+ ......+...+.+.+.-. ..+++-++|+|+++... ....+.+.
T Consensus 88 ~~~d~------------------------~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-~~~~n~LL 142 (451)
T PRK06305 88 TSLDV------------------------LEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-KEAFNSLL 142 (451)
T ss_pred CCCce------------------------EEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-HHHHHHHH
Confidence 00000 00000 000011111122111111 12566789999997665 34556677
Q ss_pred HhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHH
Q 041007 315 YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVV 393 (597)
Q Consensus 315 ~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~ 393 (597)
..+.....++.+|++|........ .+...+. +++.+++.++....+...+...+... ..+.+..|+
T Consensus 143 k~lEep~~~~~~Il~t~~~~kl~~---------tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~ 209 (451)
T PRK06305 143 KTLEEPPQHVKFFLATTEIHKIPG---------TILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIA 209 (451)
T ss_pred HHhhcCCCCceEEEEeCChHhcch---------HHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence 777665566677766633210000 1111222 99999999999988887664322111 245678899
Q ss_pred HhcCCch-HHHHHHH
Q 041007 394 GKCKGLP-FAVKILG 407 (597)
Q Consensus 394 ~~~~GlP-Lai~~~~ 407 (597)
+.++|.+ .|+..+-
T Consensus 210 ~~s~gdlr~a~~~Le 224 (451)
T PRK06305 210 RAAQGSLRDAESLYD 224 (451)
T ss_pred HHcCCCHHHHHHHHH
Confidence 9999966 4555443
No 83
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=4.6e-05 Score=81.93 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccC--CeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCch
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANF--DKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQ 275 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 275 (597)
..+.|+|..|+|||.|++.+++ .....+ ..+++++. ..+...+...+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita----------------------eef~~el~~al~~~---- 366 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS----------------------EEFTNEFINSIRDG---- 366 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH----------------------HHHHHHHHHHHHhc----
Confidence 4589999999999999999999 443322 23456653 23333333332211
Q ss_pred hhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHH-HHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCccccc
Q 041007 276 VEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQ-LMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM 353 (597)
Q Consensus 276 ~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~-l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~ 353 (597)
.. ..+++.+.+ -=+|||||++.......|.. +...+.. ...+..|||||...+.......-++.+ ......
T Consensus 367 -~~----~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S-Rf~~GL 439 (617)
T PRK14086 367 -KG----DSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN-RFEWGL 439 (617)
T ss_pred -cH----HHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh-hhhcCc
Confidence 11 122233332 35889999976643344433 3333332 234567888887653222111111110 111112
Q ss_pred eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 041007 354 EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVK 404 (597)
Q Consensus 354 ~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 404 (597)
.+.+.+.+.+.-.+++.+.+....... -.+++.-|++++.+..-.|.
T Consensus 440 vv~I~~PD~EtR~aIL~kka~~r~l~l----~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 440 ITDVQPPELETRIAILRKKAVQEQLNA----PPEVLEFIASRISRNIRELE 486 (617)
T ss_pred eEEcCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHhccCCHHHHH
Confidence 289999999999999998875432211 15667778888776654443
No 84
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=1.6e-05 Score=87.02 Aligned_cols=200 Identities=13% Similarity=0.169 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+++. +-..-....+-++.......
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r---------l~HAYLF~GP~GtGKTt~AriLAk~--LnC~~~~~~~~pC~~C~~~~--- 83 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK---------ISHAYLFSGPRGTGKTSVAKIFANA--LNCSHKTDLLEPCQECIENV--- 83 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCcHHHHHHHHHHH--hcccccCCCCCchhHHHHhh---
Confidence 457899999999999997432 2456789999999999999999763 21100000000000000000
Q ss_pred hhhhhhcccchHHHHHHHHHHhccC-CCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHhhcCCCCC
Q 041007 246 RDEISVARDRDEIRVAKAILESLKG-SVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEG 323 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~g 323 (597)
..+ .. ++ .+.+ ......+...+.+.+... ..+++-++|+|+++... ...+..+...+...+..
T Consensus 84 ------~~~---~D----vi-eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-~~A~NALLKtLEEPP~~ 148 (725)
T PRK07133 84 ------NNS---LD----II-EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-KSAFNALLKTLEEPPKH 148 (725)
T ss_pred ------cCC---Cc----EE-EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-HHHHHHHHHHhhcCCCc
Confidence 000 00 00 0000 000111222333322221 12566699999997765 55777787777665566
Q ss_pred cEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchH-
Q 041007 324 SRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPF- 401 (597)
Q Consensus 324 s~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL- 401 (597)
+.+|++|........ .+...+ .+++.+++.++....+...+...+... ..+.+..|++.++|.+-
T Consensus 149 tifILaTte~~KLl~---------TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~ 215 (725)
T PRK07133 149 VIFILATTEVHKIPL---------TILSRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRD 215 (725)
T ss_pred eEEEEEcCChhhhhH---------HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 666655543311000 111122 299999999999988887654322111 13457889999999664
Q ss_pred HHHHHH
Q 041007 402 AVKILG 407 (597)
Q Consensus 402 ai~~~~ 407 (597)
|+..+-
T Consensus 216 AlslLe 221 (725)
T PRK07133 216 ALSIAE 221 (725)
T ss_pred HHHHHH
Confidence 554443
No 85
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=9.3e-05 Score=78.88 Aligned_cols=192 Identities=11% Similarity=0.076 Sum_probs=104.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhh--hcc-CCeeEEEE-----ecC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDV--KAN-FDKRIWVS-----ASY 237 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~-F~~~~wv~-----~~~ 237 (597)
..++|.+.-.+.|..++.... -...+.++|+.|+||||+|+.++....- ... .+|..-.+ -+.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~---------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~ 86 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR---------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS 86 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCC
Confidence 457899999999999997432 2346778999999999999998763110 000 00000000 000
Q ss_pred CCchhhhhhhhhhhcccchHHHHHHHHHHhccC-CCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHH
Q 041007 238 PRDEIRVARDEISVARDRDEIRVAKAILESLKG-SVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMY 315 (597)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~ 315 (597)
..+. . .+.. ......+...+.+.+... ..+++-++|+|+++... ....+.+..
T Consensus 87 ~~d~-----------------------~-eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-~~a~naLLk 141 (486)
T PRK14953 87 FPDL-----------------------I-EIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-KEAFNALLK 141 (486)
T ss_pred CCcE-----------------------E-EEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-HHHHHHHHH
Confidence 0000 0 0000 001111122222222211 13566799999997665 445667777
Q ss_pred hhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHH
Q 041007 316 SLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVG 394 (597)
Q Consensus 316 ~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~ 394 (597)
.+........+|++|........ .+...+ .+.+.+++.++....+...+-..+... ..+.+..|++
T Consensus 142 ~LEepp~~~v~Il~tt~~~kl~~---------tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~ 208 (486)
T PRK14953 142 TLEEPPPRTIFILCTTEYDKIPP---------TILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQ 208 (486)
T ss_pred HHhcCCCCeEEEEEECCHHHHHH---------HHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Confidence 77665556666655532210000 111112 289999999999988888764322211 2456678899
Q ss_pred hcCCchHHHH
Q 041007 395 KCKGLPFAVK 404 (597)
Q Consensus 395 ~~~GlPLai~ 404 (597)
.++|.+..+.
T Consensus 209 ~s~G~lr~al 218 (486)
T PRK14953 209 ASEGGMRDAA 218 (486)
T ss_pred HcCCCHHHHH
Confidence 9999775443
No 86
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.13 E-value=0.00013 Score=72.37 Aligned_cols=211 Identities=16% Similarity=0.194 Sum_probs=119.0
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRV 244 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 244 (597)
.+.|.+|+.++..+..++..... .-+..|.|+|-+|.|||.+.+++++.. .. ..+|+++-+.+..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~-------~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~--- 69 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC-------TIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTY--- 69 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc-------ccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccH---
Confidence 45688999999999999975542 234566999999999999999999954 22 3589999999988
Q ss_pred hhhhhhhcccchHHHHHHHHHHhcc-CCCCc------hhhHHHHHHHHHHH--hc--CceEEEEEecccCCCCc--chHH
Q 041007 245 ARDEISVARDRDEIRVAKAILESLK-GSVSS------QVEMETVLQYINEF--VQ--GKKVLLVLDDLWWNAYP--RYWE 311 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~-~~~~~------~~~~~~~~~~l~~~--L~--~kr~LLVLDdv~~~~~~--~~~~ 311 (597)
..++..|+..++ .+.+. ..+.......+.++ .. ++.++||||+++...+. .-+.
T Consensus 70 -------------~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~ 136 (438)
T KOG2543|consen 70 -------------AILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQ 136 (438)
T ss_pred -------------HHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHH
Confidence 888999998885 22221 12233334444442 22 45899999998543211 1122
Q ss_pred HHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccCCCCC-CccchHHHHH
Q 041007 312 QLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGRSSD-YREKFEPIGR 390 (597)
Q Consensus 312 ~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~-~~~~~~~~~~ 390 (597)
.+...-.-......+|+++....+...... . .......+....-+.+|...++.+.--+..... ...-+.-+..
T Consensus 137 ~l~~L~el~~~~~i~iils~~~~e~~y~~n--~---g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~ 211 (438)
T KOG2543|consen 137 CLFRLYELLNEPTIVIILSAPSCEKQYLIN--T---GTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQ 211 (438)
T ss_pred HHHHHHHHhCCCceEEEEeccccHHHhhcc--c---CCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 222211122333455555543311110000 0 000111166777888998888875431111000 0111222334
Q ss_pred HHHHhcCCchHHHHHHHhh
Q 041007 391 RVVGKCKGLPFAVKILGSL 409 (597)
Q Consensus 391 ~I~~~~~GlPLai~~~~~~ 409 (597)
-....|+ -+-.+..++..
T Consensus 212 vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 212 VFYMACR-DVNELRSLISL 229 (438)
T ss_pred HHHHHhC-CHHHHHHHHHH
Confidence 4556666 66666655543
No 87
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.10 E-value=1.7e-05 Score=82.49 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=39.6
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCC---cCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDE---ESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....+.|++..+++|.+.+...-... ..-+-..++-|.|+|++|+|||++|+.+++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 34568899999999988774211100 0000124567999999999999999999883
No 88
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.08 E-value=4.3e-05 Score=75.22 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=34.4
Q ss_pred ccccchhhHHHHHHHhhCC---C--CCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 167 EFHGRNAEKQKILQLLKGE---S--SDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~---~--~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.++|.+..+++|.+..... . ...+-...+....+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 4788887777665443211 0 000111134556789999999999999999987
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.08 E-value=8.2e-05 Score=78.30 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=93.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccC--CeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANF--DKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
...+.|+|++|+|||+|++.+++. ..... ..++++++ ..+...+...+...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~----------------------~~~~~~~~~~~~~~--- 188 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS----------------------EKFTNDFVNALRNN--- 188 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH----------------------HHHHHHHHHHHHcC---
Confidence 456899999999999999999984 43333 23555543 22333333333221
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchH-HHHHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCcccc
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYW-EQLMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM 352 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~-~~l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~ 352 (597)
..+.. .+.+.+ .-+|||||++.......+ +.+...+.. ...+..+|+|+...+.......-.+.+ .....
T Consensus 189 --~~~~~----~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~g 260 (405)
T TIGR00362 189 --KMEEF----KEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS-RFEWG 260 (405)
T ss_pred --CHHHH----HHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh-hccCC
Confidence 11222 222322 348999999754322222 223333332 134566888876542211110000000 11111
Q ss_pred ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 041007 353 MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVK 404 (597)
Q Consensus 353 ~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 404 (597)
..+.+.+.+.++-..++.+.+...+... -.++...|++.+.|..-.+.
T Consensus 261 ~~v~i~~pd~~~r~~il~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 261 LVVDIEPPDLETRLAILQKKAEEEGLEL----PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhcCCCHHHHH
Confidence 2388999999999999998875432211 25677888888888776543
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.07 E-value=5.2e-05 Score=85.58 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+++++++.+.|... ...-+.++|++|+|||++|+.+++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~----------~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR----------KKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC----------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999743 3356789999999999999999883
No 91
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1.3e-05 Score=81.43 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=59.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC--CchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP--RDEIRVARDEISVARDRDEIRVAKAILESLKGSVS 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 273 (597)
....++|+|++|+|||||++.+++... ..+|+..+|+.+.+. .+. .++++.++..+-....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EV----------------tDLqrsIlg~Vvast~ 229 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEV----------------TDMQRSVKGEVVASTF 229 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccH----------------HHHHHHhhceEEEecC
Confidence 457899999999999999999999532 337999999998865 444 7777777443322211
Q ss_pred c--hhh---H-HHHHHHHHHH-hcCceEEEEEeccc
Q 041007 274 S--QVE---M-ETVLQYINEF-VQGKKVLLVLDDLW 302 (597)
Q Consensus 274 ~--~~~---~-~~~~~~l~~~-L~~kr~LLVLDdv~ 302 (597)
+ ... . ..+.+..... -.+++++|++|++.
T Consensus 230 d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 230 DEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChh
Confidence 1 111 1 1222222222 24889999999994
No 92
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.07 E-value=1.6e-05 Score=81.97 Aligned_cols=64 Identities=19% Similarity=0.083 Sum_probs=51.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
.+.++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.......|..+.||.++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hcccCCHHHHHHHHHHHhc------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4577889999999998873 357888999999999999999885433446777889998876655
No 93
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00016 Score=79.27 Aligned_cols=183 Identities=11% Similarity=0.123 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhh---------------------
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVK--------------------- 224 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------- 224 (597)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.....-.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~---------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK---------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQ 87 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcC
Confidence 468999999999999997432 24568899999999999998887631100
Q ss_pred ccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH-hcCceEEEEEecccC
Q 041007 225 ANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWW 303 (597)
Q Consensus 225 ~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~ 303 (597)
.+|+. ..+..... ....+...+...+... ..+++-++|+|+++.
T Consensus 88 ~~~n~-~~ld~~~~----------------------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~ 132 (614)
T PRK14971 88 RSYNI-HELDAASN----------------------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHM 132 (614)
T ss_pred CCCce-EEeccccc----------------------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECccc
Confidence 01111 11111000 0011111122111111 124556889999987
Q ss_pred CCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCc
Q 041007 304 NAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYR 382 (597)
Q Consensus 304 ~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~ 382 (597)
.. ...++.+...+..-..++.+|++|........ .+...+. +++.+++.++....+...+...+...
T Consensus 133 Ls-~~a~naLLK~LEepp~~tifIL~tt~~~kIl~---------tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-- 200 (614)
T PRK14971 133 LS-QAAFNAFLKTLEEPPSYAIFILATTEKHKILP---------TILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-- 200 (614)
T ss_pred CC-HHHHHHHHHHHhCCCCCeEEEEEeCCchhchH---------HHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 76 55677788888776667777665543310000 1111122 99999999999998887764332211
Q ss_pred cchHHHHHHHHHhcCCchH-HHHHH
Q 041007 383 EKFEPIGRRVVGKCKGLPF-AVKIL 406 (597)
Q Consensus 383 ~~~~~~~~~I~~~~~GlPL-ai~~~ 406 (597)
..+.+..|++.++|..- ++..+
T Consensus 201 --~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 201 --EPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred --CHHHHHHHHHHcCCCHHHHHHHH
Confidence 13467889999999665 44433
No 94
>CHL00181 cbbX CbbX; Provisional
Probab=98.06 E-value=7.4e-05 Score=74.21 Aligned_cols=143 Identities=10% Similarity=0.089 Sum_probs=71.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
...+.++|++|+|||++|+.+++.....+.-...-|+.++. ..+.. ...+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~--------------------~~l~~----~~~g~~---- 110 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR--------------------DDLVG----QYIGHT---- 110 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH--------------------HHHHH----HHhccc----
Confidence 34588999999999999999977311111111112333331 11111 111110
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCC--------CcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccC
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNA--------YPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKN 348 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~--------~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~ 348 (597)
.......+.+. ..-+|+||++.... .....+.+...+.....+..||+++..... ..+......
T Consensus 111 -~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~----~~~~~~np~ 182 (287)
T CHL00181 111 -APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRM----DKFYESNPG 182 (287)
T ss_pred -hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHH----HHHHhcCHH
Confidence 01111222222 23499999996431 012233344445455556677777754310 000000001
Q ss_pred ccccc--eeecCCCChHHHHHHHHHHhcc
Q 041007 349 GTNMM--EIGLGELSEEECRSLFRQIAFH 375 (597)
Q Consensus 349 ~~~~~--~~~l~~Ls~~es~~Lf~~~~~~ 375 (597)
..+.. .+.+.+++.+|..+++...+..
T Consensus 183 L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 183 LSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred HHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 12222 2899999999999998888743
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00024 Score=77.36 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=107.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+...+.|..++.... -...+.++|+.|+|||++|+.+.+..--...-+. .+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~---------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~---- 75 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK---------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNE---- 75 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCc----
Confidence 468999999999999998532 2456788999999999999998763110000000 00000
Q ss_pred hhhhhhcccchHHHHHHHHHHhccC-------C-CCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILESLKG-------S-VSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~-------~-~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-.....+...... . ....++..++...+... ..++.-++|+|+++... ...+..+...
T Consensus 76 ------------C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-~~a~naLLKt 142 (559)
T PRK05563 76 ------------CEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-TGAFNALLKT 142 (559)
T ss_pred ------------cHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-HHHHHHHHHH
Confidence 1111111111000 0 01111222222222211 13566788999997765 5567777777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+......+.+|++|........ .+...+ .+++.+++.++....+...+...+... -.+.+..|++.
T Consensus 143 LEepp~~~ifIlatt~~~ki~~---------tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~ 209 (559)
T PRK05563 143 LEEPPAHVIFILATTEPHKIPA---------TILSRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARA 209 (559)
T ss_pred hcCCCCCeEEEEEeCChhhCcH---------HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHH
Confidence 7665556666666543311100 111112 288999999999988887764322111 14567788889
Q ss_pred cCCchHHH
Q 041007 396 CKGLPFAV 403 (597)
Q Consensus 396 ~~GlPLai 403 (597)
++|.+.-+
T Consensus 210 s~G~~R~a 217 (559)
T PRK05563 210 AEGGMRDA 217 (559)
T ss_pred cCCCHHHH
Confidence 98877543
No 96
>PRK06620 hypothetical protein; Validated
Probab=98.05 E-value=6e-05 Score=71.54 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=57.7
Q ss_pred EEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHH
Q 041007 294 VLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQI 372 (597)
Q Consensus 294 ~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~ 372 (597)
-+|++||++... . ..+...+.. ...|..||+|++..+...... ++.+ .......++++++++++-..++.+.
T Consensus 87 d~lliDdi~~~~---~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~--~L~S-Rl~~gl~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 87 NAFIIEDIENWQ---E-PALLHIFNIINEKQKYLLLTSSDKSRNFTLP--DLSS-RIKSVLSILLNSPDDELIKILIFKH 159 (214)
T ss_pred CEEEEeccccch---H-HHHHHHHHHHHhcCCEEEEEcCCCccccchH--HHHH-HHhCCceEeeCCCCHHHHHHHHHHH
Confidence 478899996322 1 123222222 245678999998775432110 0000 1111112999999999988888877
Q ss_pred hccCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 041007 373 AFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKIL 406 (597)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 406 (597)
+...+- . --+++.+-|++.+.|.--.+.-+
T Consensus 160 ~~~~~l-~---l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 160 FSISSV-T---ISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred HHHcCC-C---CCHHHHHHHHHHccCCHHHHHHH
Confidence 643211 1 11567788888888766555433
No 97
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=6.9e-05 Score=79.18 Aligned_cols=170 Identities=16% Similarity=0.175 Sum_probs=92.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccC-C-eeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANF-D-KRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
...+.|+|++|+|||+|++.+++ ...... . .++|++. .++...+...+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~----------------------~~f~~~~~~~~~~~--- 182 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS----------------------EKFLNDLVDSMKEG--- 182 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH----------------------HHHHHHHHHHHhcc---
Confidence 44699999999999999999999 444433 2 3566653 33344444443221
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchH-HHHHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCcccc
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYW-EQLMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM 352 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~-~~l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~ 352 (597)
..+ .+.+.+..+.-+|+|||++.......+ +.+...+.. ...|..||+||...+.......-.+.+ .....
T Consensus 183 --~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S-R~~~g 255 (440)
T PRK14088 183 --KLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS-RFQMG 255 (440)
T ss_pred --cHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh-HHhcC
Confidence 111 122233334568999999754212222 233333322 123457888876432111000000000 00111
Q ss_pred ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 041007 353 MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVK 404 (597)
Q Consensus 353 ~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 404 (597)
..+.+.+.+.+.-.+++.+.+...... . -.++...|++.+.|.--.+.
T Consensus 256 l~v~i~~pd~e~r~~IL~~~~~~~~~~-l---~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 256 LVAKLEPPDEETRKKIARKMLEIEHGE-L---PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred ceEeeCCCCHHHHHHHHHHHHHhcCCC-C---CHHHHHHHHhccccCHHHHH
Confidence 127899999999999999887532221 1 15567888888887654443
No 98
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.05 E-value=0.00037 Score=66.55 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=101.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+|+|.+.-+++|.=.+..... .+..+--|.++||+|.||||||.-+++. ...++. ++ +.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-----r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~t--sGp~l---- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-----RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----IT--SGPAL---- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-----cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ec--ccccc----
Confidence 5799999998888777764432 1235778999999999999999999994 333221 11 11111
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC------
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS------ 319 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~------ 319 (597)
....++...+.. | ...=+|++|.++... ...-+.+...+..
T Consensus 89 ------------------------------eK~gDlaaiLt~-L-e~~DVLFIDEIHrl~-~~vEE~LYpaMEDf~lDI~ 135 (332)
T COG2255 89 ------------------------------EKPGDLAAILTN-L-EEGDVLFIDEIHRLS-PAVEEVLYPAMEDFRLDII 135 (332)
T ss_pred ------------------------------cChhhHHHHHhc-C-CcCCeEEEehhhhcC-hhHHHHhhhhhhheeEEEE
Confidence 011111222211 2 234577889987665 3333333333321
Q ss_pred --CCCCcE-----------EEEEccCCCCCCCcccccccccCccccce--eecCCCChHHHHHHHHHHhccCCCCCCccc
Q 041007 320 --GSEGSR-----------ILVTRSGGKNGTNMTEIGLGEKNGTNMME--IGLGELSEEECRSLFRQIAFHGRSSDYREK 384 (597)
Q Consensus 320 --~~~gs~-----------IIvTtR~~~~~~~~~~~~~~~~~~~~~~~--~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~ 384 (597)
.+++++ |=-|||...-. .......+ .++.-.+.+|-.++..+.+..-.. +-
T Consensus 136 IG~gp~Arsv~ldLppFTLIGATTr~G~lt----------~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i 201 (332)
T COG2255 136 IGKGPAARSIRLDLPPFTLIGATTRAGMLT----------NPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EI 201 (332)
T ss_pred EccCCccceEeccCCCeeEeeecccccccc----------chhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CC
Confidence 123333 23467665110 01111111 677778889998888887732221 11
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 041007 385 FEPIGRRVVGKCKGLPFAVKIL 406 (597)
Q Consensus 385 ~~~~~~~I~~~~~GlPLai~~~ 406 (597)
..+.+.+|+++..|-|--..-+
T Consensus 202 ~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 202 DEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred ChHHHHHHHHhccCCcHHHHHH
Confidence 2567899999999999654433
No 99
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.04 E-value=3.5e-05 Score=78.32 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=83.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+...+.+..++.... .+.++.++|++|+|||++|+.+++. .... ...++.+. ...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~---------~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~---- 81 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR---------IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI---- 81 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC---------CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH----
Confidence 568999999999999987422 3457777999999999999999873 2211 22333332 111
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcE
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSR 325 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~ 325 (597)
..+ +..+... .... .+.+.+-+||+|+++..........+...+.....++.
T Consensus 82 ------------~~i-~~~l~~~-------------~~~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~ 133 (316)
T PHA02544 82 ------------DFV-RNRLTRF-------------ASTV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCS 133 (316)
T ss_pred ------------HHH-HHHHHHH-------------HHhh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCce
Confidence 111 1101000 0000 01134568999999766323333445444555567788
Q ss_pred EEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHH
Q 041007 326 ILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQ 371 (597)
Q Consensus 326 IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~ 371 (597)
+|+||........ .+...+ .+.+...+.++..+++..
T Consensus 134 ~Ilt~n~~~~l~~---------~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 134 FIITANNKNGIIE---------PLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEEcCChhhchH---------HHHhhceEEEeCCCCHHHHHHHHHH
Confidence 8888864411000 111111 266777777777665543
No 100
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.0002 Score=78.49 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..++|.+.-...|..++.... -...+.++|+.|+||||+|+.+++...-. .......-.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r---------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~~~~Cg~-------- 77 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR---------IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPTPEPCGK-------- 77 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC---------CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCCCCCCcc--------
Confidence 467899999999999988432 23578899999999999999998742111 110000000000
Q ss_pred hhhhhhcccchHHHHHHHHHHhccC-----C---CCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILESLKG-----S---VSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~-----~---~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-...+.+...... . ........++...+... ..+++-++|+|+++... ...++.+...
T Consensus 78 ------------C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-~~a~naLLK~ 144 (620)
T PRK14948 78 ------------CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-TAAFNALLKT 144 (620)
T ss_pred ------------cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-HHHHHHHHHH
Confidence 1111111111110 0 01111222222221110 12455689999998776 5567778777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+..-...+.+|++|.+...... .+...+. +++.+++.++....+...+...+... ..+.+..|++.
T Consensus 145 LEePp~~tvfIL~t~~~~~llp---------TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i----s~~al~~La~~ 211 (620)
T PRK14948 145 LEEPPPRVVFVLATTDPQRVLP---------TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI----EPEALTLVAQR 211 (620)
T ss_pred HhcCCcCeEEEEEeCChhhhhH---------HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHH
Confidence 7765556666665544311000 1111222 88889999998888877664322111 13567889999
Q ss_pred cCCchHHHHH
Q 041007 396 CKGLPFAVKI 405 (597)
Q Consensus 396 ~~GlPLai~~ 405 (597)
++|.+..+..
T Consensus 212 s~G~lr~A~~ 221 (620)
T PRK14948 212 SQGGLRDAES 221 (620)
T ss_pred cCCCHHHHHH
Confidence 9998764433
No 101
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.02 E-value=6.8e-05 Score=79.94 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=94.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCC--eeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFD--KRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
...+.|+|++|+|||+|++.+++ .....++ .++++++ ..+...+...+...
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~----------------------~~~~~~~~~~~~~~--- 200 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS----------------------EKFTNDFVNALRNN--- 200 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH----------------------HHHHHHHHHHHHcC---
Confidence 45789999999999999999999 4544432 3556653 22333333333211
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchH-HHHHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCcccc
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYW-EQLMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM 352 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~-~~l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~ 352 (597)
..+ .+.+.++ +.-+|||||++.......+ +.+...+.. ...+..+|+|+...+.........+.+ .....
T Consensus 201 --~~~----~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~g 272 (450)
T PRK00149 201 --TME----EFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS-RFEWG 272 (450)
T ss_pred --cHH----HHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh-HhcCC
Confidence 111 2223333 3448999999754322222 233333322 223456888876542111100000000 11111
Q ss_pred ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 041007 353 MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVK 404 (597)
Q Consensus 353 ~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 404 (597)
..+++.+.+.++-..++.+.+...+.. --.++...|++.+.|..-.+.
T Consensus 273 l~v~i~~pd~~~r~~il~~~~~~~~~~----l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 273 LTVDIEPPDLETRIAILKKKAEEEGID----LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred eeEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHcCcCCCHHHHH
Confidence 238999999999999999987532211 125678889999998776543
No 102
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00023 Score=77.12 Aligned_cols=192 Identities=10% Similarity=0.111 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|-+.-++.|..++.... -...+.++|+.|+||||+|+.+++..--...... .++....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~---------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~------ 77 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK---------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECS------ 77 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccch------
Confidence 468999999999999997432 3457889999999999999999874211111000 0000000
Q ss_pred hhhhhhcccchHHHHHHHHHHh-------ccCCC-CchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILES-------LKGSV-SSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~-------l~~~~-~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
..+.+... +.+.. ....+..++.+.+... ..+++-++|+|+++... ...++.+...
T Consensus 78 --------------~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-~~a~naLLK~ 142 (563)
T PRK06647 78 --------------SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-NSAFNALLKT 142 (563)
T ss_pred --------------HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-HHHHHHHHHh
Confidence 00000000 00000 1111121222211111 23566689999998776 5567778777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+...+..+.+|++|....... ..+...+. +++.+++.++....+...+...+.. -..+.+..|++.
T Consensus 143 LEepp~~~vfI~~tte~~kL~---------~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~ 209 (563)
T PRK06647 143 IEEPPPYIVFIFATTEVHKLP---------ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYK 209 (563)
T ss_pred hccCCCCEEEEEecCChHHhH---------HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHH
Confidence 776666777777664321000 01112222 8999999999998888876433221 124567789999
Q ss_pred cCCchHHH
Q 041007 396 CKGLPFAV 403 (597)
Q Consensus 396 ~~GlPLai 403 (597)
++|.+-.+
T Consensus 210 s~GdlR~a 217 (563)
T PRK06647 210 STGSVRDA 217 (563)
T ss_pred cCCCHHHH
Confidence 99987544
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00019 Score=78.38 Aligned_cols=197 Identities=11% Similarity=0.152 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+.-.+.|..++.... -...+.++|+.|+||||+|+.+++..--...... -.+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~---------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---~~c~~-------- 75 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR---------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---EPCNV-------- 75 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---CCCCc--------
Confidence 468999999999999987432 2356789999999999999998773111111000 00000
Q ss_pred hhhhhhcccchHHHHHHHHHHh-------ccCC-CCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILES-------LKGS-VSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~-------l~~~-~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-.....|... +.+. .....+...+...+... ..++.-++|+|+++..+ ....+.+...
T Consensus 76 ------------c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-~~a~naLLk~ 142 (576)
T PRK14965 76 ------------CPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-TNAFNALLKT 142 (576)
T ss_pred ------------cHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-HHHHHHHHHH
Confidence 0000000000 0000 01111222222222211 12455689999997766 5567778888
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+......+.+|++|.+...... .+...+. +++.+++.++....+...+...+... -.+.+..|++.
T Consensus 143 LEepp~~~~fIl~t~~~~kl~~---------tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~ 209 (576)
T PRK14965 143 LEEPPPHVKFIFATTEPHKVPI---------TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARK 209 (576)
T ss_pred HHcCCCCeEEEEEeCChhhhhH---------HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHH
Confidence 8766667777766643310000 1111122 88999999999888877654322211 14566789999
Q ss_pred cCCch-HHHHHHHh
Q 041007 396 CKGLP-FAVKILGS 408 (597)
Q Consensus 396 ~~GlP-Lai~~~~~ 408 (597)
++|.. .++..+-.
T Consensus 210 a~G~lr~al~~Ldq 223 (576)
T PRK14965 210 GDGSMRDSLSTLDQ 223 (576)
T ss_pred cCCCHHHHHHHHHH
Confidence 99865 55555533
No 104
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00023 Score=72.06 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=66.1
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf 369 (597)
+++-++|+|+++.++ ....+.+...+..-+.++.+|+||.+...... -+...+. +.+.+++.+++.+.+
T Consensus 105 ~~~kv~iI~~a~~m~-~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~---------TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 105 GGRKVVLIEPAEAMN-RNAANALLKSLEEPSGDTVLLLISHQPSRLLP---------TIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred CCCeEEEECChhhCC-HHHHHHHHHHHhCCCCCeEEEEEECChhhCcH---------HHHhhceeeeCCCcCHHHHHHHH
Confidence 344456789998887 66778888888776677888888876622111 1111222 999999999999988
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKIL 406 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 406 (597)
..... . . ..+.+..++..++|.|+....+
T Consensus 175 ~~~~~--~--~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQALP--E--S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhcc--c--C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 76531 0 1 1334567889999999865544
No 105
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00037 Score=70.09 Aligned_cols=197 Identities=14% Similarity=0.205 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhh-------------hccCCeeEE
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDV-------------KANFDKRIW 232 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-------------~~~F~~~~w 232 (597)
.+++|.+..++.|...+.... -.....++|+.|+||+++|..+.+..-- ...++...|
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r---------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR---------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC---------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE
Confidence 357899999999999997432 2578999999999999999887653100 112233344
Q ss_pred EEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhcc--CCCCchhhHHHHHHHHHHHhc-----CceEEEEEecccCCC
Q 041007 233 VSASYPRDEIRVARDEISVARDRDEIRVAKAILESLK--GSVSSQVEMETVLQYINEFVQ-----GKKVLLVLDDLWWNA 305 (597)
Q Consensus 233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~L~-----~kr~LLVLDdv~~~~ 305 (597)
+.-...... ..+....+...+ .........+++ +.+.+.+. +++-++|+|+++.++
T Consensus 75 i~p~~~~~g----------------~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~ 137 (314)
T PRK07399 75 VEPTYQHQG----------------KLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMN 137 (314)
T ss_pred Eeccccccc----------------cccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcC
Confidence 421100000 000001111111 111112222222 22333332 556799999997776
Q ss_pred CcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccc
Q 041007 306 YPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREK 384 (597)
Q Consensus 306 ~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~ 384 (597)
....+.+...+..-+ .+.+|++|.+...... -+...+. +++.+++.++..+.+.+..... .
T Consensus 138 -~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~---------TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-------~ 199 (314)
T PRK07399 138 -EAAANALLKTLEEPG-NGTLILIAPSPESLLP---------TIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-------I 199 (314)
T ss_pred -HHHHHHHHHHHhCCC-CCeEEEEECChHhCcH---------HHHhhceEEecCCCCHHHHHHHHHHhhccc-------c
Confidence 556777887776545 4556655544311110 1112222 9999999999999998764211 1
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 041007 385 FEPIGRRVVGKCKGLPFAVKIL 406 (597)
Q Consensus 385 ~~~~~~~I~~~~~GlPLai~~~ 406 (597)
.......++..++|.|..+..+
T Consensus 200 ~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 200 LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred chhHHHHHHHHcCCCHHHHHHH
Confidence 1111367899999999766543
No 106
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00052 Score=64.73 Aligned_cols=187 Identities=18% Similarity=0.159 Sum_probs=107.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC-CchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP-RDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
+.+++.|+|.-|+|||.+.+..... ..+ +.++-+.+..+ ... ..+...++..+..+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~----------------~~~~~ai~~~l~~~p~~ 109 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSD----------------ATLLEAIVADLESQPKV 109 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhH----------------HHHHHHHHHHhccCccc
Confidence 3469999999999999999944331 111 11121222221 222 67777777777763221
Q ss_pred --hhhHHHHHHHHHHHhc-Cce-EEEEEecccCCCCcchHHHHHHhhcC---CCCCcEEEEEccCCCCCCCccccccccc
Q 041007 275 --QVEMETVLQYINEFVQ-GKK-VLLVLDDLWWNAYPRYWEQLMYSLKS---GSEGSRILVTRSGGKNGTNMTEIGLGEK 347 (597)
Q Consensus 275 --~~~~~~~~~~l~~~L~-~kr-~LLVLDdv~~~~~~~~~~~l~~~l~~---~~~gs~IIvTtR~~~~~~~~~~~~~~~~ 347 (597)
....+...+.+....+ +++ ..+++|+.+... ....+.+...... ....-+|+.....+....- .++..
T Consensus 110 ~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~-~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~l----r~~~l 184 (269)
T COG3267 110 NVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLN-DSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRL----RLPVL 184 (269)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhC-hhHHHHHHHHHhhcccccCceeeeecCCcccchhh----chHHH
Confidence 2223444444444443 566 899999997765 4455555543322 2222345554443311100 00000
Q ss_pred -Ccc-ccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHh
Q 041007 348 -NGT-NMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGS 408 (597)
Q Consensus 348 -~~~-~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~ 408 (597)
+.. +... |++.|++.++...++..+..+...+ .+--..+....|.....|.|.+|..++.
T Consensus 185 ~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 185 RELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HhhhheEEEEEecCCcChHHHHHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHH
Confidence 111 1112 8999999999999999888665332 2222356678899999999999987754
No 107
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.95 E-value=4e-05 Score=66.69 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 041007 200 IWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 200 v~I~G~gGiGKTtLA~~v~~~ 220 (597)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999984
No 108
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=0.00017 Score=76.10 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=87.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
...+.|+|+.|+|||+|++.+++. .......+++++. ..+...+...+...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~----------------------~~f~~~~~~~l~~~----- 191 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS----------------------ELFTEHLVSAIRSG----- 191 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH----------------------HHHHHHHHHHHhcc-----
Confidence 456889999999999999999984 4333233455542 22333333333211
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchH-HHHHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCccccce
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYW-EQLMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME 354 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~-~~l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~ 354 (597)
. ...++..+. ..-+|++||++.......+ +.+...+.. ...|..||+||...+........++.+ .......
T Consensus 192 ~----~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S-R~~~Gl~ 265 (445)
T PRK12422 192 E----MQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS-RFEWGIA 265 (445)
T ss_pred h----HHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh-hhcCCeE
Confidence 1 112333333 3458889999765422122 223333322 124567888886542111111000000 0111123
Q ss_pred eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCc
Q 041007 355 IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGL 399 (597)
Q Consensus 355 ~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 399 (597)
+++.+++.++-..++.+.+...+.. . -.++..-|+..+.|.
T Consensus 266 ~~l~~pd~e~r~~iL~~k~~~~~~~-l---~~evl~~la~~~~~d 306 (445)
T PRK12422 266 IPLHPLTKEGLRSFLERKAEALSIR-I---EETALDFLIEALSSN 306 (445)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHhcCCC
Confidence 8899999999999999887543211 1 144556676666654
No 109
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00047 Score=70.68 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=84.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQ 275 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 275 (597)
....+.|+|+.|.|||.|++++.+ ......+....+.++. +.....++..+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s--------------------e~f~~~~v~a~~~----- 164 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS--------------------EDFTNDFVKALRD----- 164 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH--------------------HHHHHHHHHHHHh-----
Confidence 467899999999999999999999 5555555333333322 3333333333221
Q ss_pred hhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHH-HHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCccccc
Q 041007 276 VEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQ-LMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM 353 (597)
Q Consensus 276 ~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~-l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~ 353 (597)
.-...+++.. .-=++++||++.....+.|+. +...|.. ...|..||+|++..+.......-++.+ ......
T Consensus 165 ----~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S-R~~~Gl 237 (408)
T COG0593 165 ----NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS-RLEWGL 237 (408)
T ss_pred ----hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH-HHhcee
Confidence 1123344444 334889999976543333433 3444433 234448999987663322211111100 011112
Q ss_pred eeecCCCChHHHHHHHHHHhccCC
Q 041007 354 EIGLGELSEEECRSLFRQIAFHGR 377 (597)
Q Consensus 354 ~~~l~~Ls~~es~~Lf~~~~~~~~ 377 (597)
.+.+.|.+.+.-..++.+.+....
T Consensus 238 ~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 238 VVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred EEeeCCCCHHHHHHHHHHHHHhcC
Confidence 299999999999999998775433
No 110
>PRK10536 hypothetical protein; Provisional
Probab=97.91 E-value=0.00043 Score=66.35 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=40.0
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCe
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDK 229 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~ 229 (597)
+...+.+|......+..+|.. ..+|.++|++|+|||+||..+..+.-..+.|..
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k 106 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES------------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDR 106 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE
Confidence 334567888899999998862 359999999999999999998774222334443
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.91 E-value=0.00012 Score=83.64 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.+++++.+.|.... ...+.++|++|+|||++|..++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~----------~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT----------KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc----------cCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998432 346679999999999999999874
No 112
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.90 E-value=9.2e-05 Score=64.90 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
..+.|+|++|+||||+++.++.. .......++++..+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEE
Confidence 68999999999999999999884 333223455555443
No 113
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.89 E-value=0.00016 Score=71.86 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhh
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVE 277 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 277 (597)
.-+.++|++|+|||++|+.+++.....+......|+.++. .++ +..+.+.. .
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~--------------------~~l----~~~~~g~~--~-- 110 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR--------------------DDL----VGQYIGHT--A-- 110 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH--------------------HHH----hHhhcccc--h--
Confidence 3688999999999999977766311111111112343331 111 11111111 1
Q ss_pred HHHHHHHHHHHhcCceEEEEEecccCCC--------CcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCc
Q 041007 278 METVLQYINEFVQGKKVLLVLDDLWWNA--------YPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNG 349 (597)
Q Consensus 278 ~~~~~~~l~~~L~~kr~LLVLDdv~~~~--------~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~ 349 (597)
......+.+. ..-+|+||++.... ....++.+...+.....+.+||+++...... .+.......
T Consensus 111 -~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~----~~~~~np~L 182 (284)
T TIGR02880 111 -PKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD----SFFESNPGF 182 (284)
T ss_pred -HHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH----HHHhhCHHH
Confidence 1112222222 23689999996431 0123344555555555666777776543000 000000011
Q ss_pred cc--cceeecCCCChHHHHHHHHHHhc
Q 041007 350 TN--MMEIGLGELSEEECRSLFRQIAF 374 (597)
Q Consensus 350 ~~--~~~~~l~~Ls~~es~~Lf~~~~~ 374 (597)
.. ...+.+.+++.+|..+++...+-
T Consensus 183 ~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 183 SSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred HhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 11 12389999999999999888764
No 114
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.84 E-value=0.00015 Score=82.99 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.+++++++.|.... ...+.++|++|+|||+||..+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~----------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT----------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC----------cCceEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998533 356779999999999999999873
No 115
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=0.00026 Score=77.19 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=40.8
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.++.++++..++...... ....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~-----~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE-----NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-----cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999754321 123468999999999999999999874
No 116
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.82 E-value=0.0024 Score=59.62 Aligned_cols=125 Identities=14% Similarity=0.263 Sum_probs=80.2
Q ss_pred ccCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 162 VIDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 162 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
.++-..++|-|...+.|.+....... .....-|.+||.-|+|||+|++++.+ .+.......+ -+..
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~------G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLV--EV~k---- 121 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAE------GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLV--EVDK---- 121 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHc------CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEE--EEcH----
Confidence 34456789999999988876654433 22345789999999999999999998 4544433322 2211
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG- 320 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~- 320 (597)
.+..+...+.+.|+. ..++|+|..||+--+........+...|..+
T Consensus 122 -------------------------------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v 168 (287)
T COG2607 122 -------------------------------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGV 168 (287)
T ss_pred -------------------------------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCc
Confidence 011122233333332 3679999999997766677888888888643
Q ss_pred --CCCcEEEEEccCC
Q 041007 321 --SEGSRILVTRSGG 333 (597)
Q Consensus 321 --~~gs~IIvTtR~~ 333 (597)
.+...++..|.++
T Consensus 169 e~rP~NVl~YATSNR 183 (287)
T COG2607 169 EGRPANVLFYATSNR 183 (287)
T ss_pred ccCCCeEEEEEecCC
Confidence 3444555556555
No 117
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.82 E-value=0.00016 Score=76.88 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHhhCCCCC-C--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSD-E--ESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~-~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+.|.+..+++|.+.+...-.+ + ..-+-..++-+.++|++|+|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 45678999999998876421100 0 0000123466899999999999999999984
No 118
>PRK08116 hypothetical protein; Validated
Probab=97.81 E-value=0.00011 Score=72.19 Aligned_cols=104 Identities=23% Similarity=0.253 Sum_probs=59.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhh
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVE 277 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 277 (597)
..+.|+|.+|+|||.||..+++. .......++++++ ..++..+........ ..+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~----------------------~~ll~~i~~~~~~~~--~~~ 168 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF----------------------PQLLNRIKSTYKSSG--KED 168 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH----------------------HHHHHHHHHHHhccc--ccc
Confidence 46899999999999999999994 4333344566653 334444443332211 111
Q ss_pred HHHHHHHHHHHhcCceEEEEEecccCCCCcchHHH--HHHhhcC-CCCCcEEEEEccCC
Q 041007 278 METVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQ--LMYSLKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 278 ~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~--l~~~l~~-~~~gs~IIvTtR~~ 333 (597)
... +.+.+.+-. ||||||+.... ...|.. +...+.. ...+..+|+||...
T Consensus 169 ~~~----~~~~l~~~d-lLviDDlg~e~-~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 169 ENE----IIRSLVNAD-LLILDDLGAER-DTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHH----HHHHhcCCC-EEEEecccCCC-CCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 112 223333333 89999995433 234443 4333333 24566799998644
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.81 E-value=0.00014 Score=81.37 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.+++++.+.|.... ...+.++|++|+|||++|+.+++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~----------~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR----------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC----------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998532 245578999999999999999873
No 120
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.79 E-value=0.00049 Score=71.76 Aligned_cols=124 Identities=23% Similarity=0.253 Sum_probs=73.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhH
Q 041007 199 VIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEM 278 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 278 (597)
++.|.|+-++||||+++.+... ..+. .+++...+.... .. ..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~----------------~~-----------------~l 80 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLD----------------RI-----------------EL 80 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcc----------------hh-----------------hH
Confidence 9999999999999999776663 2222 444443221111 00 00
Q ss_pred HHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccceeecC
Q 041007 279 ETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLG 358 (597)
Q Consensus 279 ~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~ 358 (597)
.+....+.+.-..++..++||.|+... .|......+....+. +|++|+.+......... +.-..+...+++.
T Consensus 81 ~d~~~~~~~~~~~~~~yifLDEIq~v~---~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~----~~L~GR~~~~~l~ 152 (398)
T COG1373 81 LDLLRAYIELKEREKSYIFLDEIQNVP---DWERALKYLYDRGNL-DVLITGSSSSLLSKEIS----ESLAGRGKDLELY 152 (398)
T ss_pred HHHHHHHHHhhccCCceEEEecccCch---hHHHHHHHHHccccc-eEEEECCchhhhccchh----hhcCCCceeEEEC
Confidence 111111111111277899999997766 899988888776666 88888777632211110 0011122239999
Q ss_pred CCChHHHHHH
Q 041007 359 ELSEEECRSL 368 (597)
Q Consensus 359 ~Ls~~es~~L 368 (597)
|||..|-..+
T Consensus 153 PlSF~Efl~~ 162 (398)
T COG1373 153 PLSFREFLKL 162 (398)
T ss_pred CCCHHHHHhh
Confidence 9999998664
No 121
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=9.2e-05 Score=81.24 Aligned_cols=141 Identities=19% Similarity=0.286 Sum_probs=87.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..++|.++.+..+.+.+......-. .++....+....||.|||||.||++++.. .-+.=+..+-+++|
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~-dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMS--------- 558 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLG-DPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMS--------- 558 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCC-CCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechH---------
Confidence 5688999999999998875543221 12345668888999999999999998762 21111333444444
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceE-EEEEecccCCCCcchHHHHHHhhcCC----
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKV-LLVLDDLWWNAYPRYWEQLMYSLKSG---- 320 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LLVLDdv~~~~~~~~~~~l~~~l~~~---- 320 (597)
+-..+.-...|-+..+.-...++ -..|-+..+.++| +|.||++...+ ++..+.+...|..+
T Consensus 559 ------------Ey~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAH-pdV~nilLQVlDdGrLTD 624 (786)
T COG0542 559 ------------EYMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAH-PDVFNLLLQVLDDGRLTD 624 (786)
T ss_pred ------------HHHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcC-HHHHHHHHHHhcCCeeec
Confidence 22233334444444443222222 2334455667877 88899998776 77888888888653
Q ss_pred C-------CCcEEEEEccC
Q 041007 321 S-------EGSRILVTRSG 332 (597)
Q Consensus 321 ~-------~gs~IIvTtR~ 332 (597)
+ +++-||+||--
T Consensus 625 ~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 625 GQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred CCCCEEecceeEEEEeccc
Confidence 2 24567777743
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.73 E-value=0.00051 Score=78.91 Aligned_cols=45 Identities=24% Similarity=0.396 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.++++++..|.... ...+.++|++|+|||++|..+.+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~----------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT----------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC----------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999997432 356678999999999999998873
No 123
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.72 E-value=0.00077 Score=70.04 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHhhCCCCC-C--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSD-E--ESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~-~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+.|-+..+++|.+.+...-.. + ...+-..++-|.++|++|+|||+||+.+++.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45789999998888776421100 0 0000124578999999999999999999983
No 124
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.69 E-value=0.00027 Score=73.92 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHhhCCCCC-C--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSD-E--ESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~-~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+.|.+..+++|.+.+...-.+ + ..-+-..++.|.|+|++|+|||+||+.+++.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999998877522110 0 0000123467889999999999999999983
No 125
>PRK08181 transposase; Validated
Probab=97.69 E-value=0.0003 Score=68.88 Aligned_cols=102 Identities=20% Similarity=0.236 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhh
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVE 277 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 277 (597)
..+.|+|++|+|||.||..+.+. .......++|+++ .++...+..... ..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~----------------------~~L~~~l~~a~~-----~~~ 157 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT----------------------TDLVQKLQVARR-----ELQ 157 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH----------------------HHHHHHHHHHHh-----CCc
Confidence 46999999999999999999883 3333334556543 233333322211 011
Q ss_pred HHHHHHHHHHHhcCceEEEEEecccCCCCcchHH-HHHHhhcCCCCCcEEEEEccCC
Q 041007 278 METVLQYINEFVQGKKVLLVLDDLWWNAYPRYWE-QLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 278 ~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~-~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
....... + .+.-||||||+........+. .+...+.....+..+||||...
T Consensus 158 ~~~~l~~----l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 158 LESAIAK----L-DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHHHH----H-hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 1222222 2 234599999996554333332 2344443322234688888755
No 126
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0022 Score=64.40 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=65.5
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf 369 (597)
+++-++|||+++.++ ...-+.+...+..-..++.+|++|.+...... -+...+. +.+.+++.+++.+.+
T Consensus 112 g~~kV~iI~~ae~m~-~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp---------TIrSRCq~i~~~~~~~~~~~~~L 181 (319)
T PRK08769 112 GIAQVVIVDPADAIN-RAACNALLKTLEEPSPGRYLWLISAQPARLPA---------TIRSRCQRLEFKLPPAHEALAWL 181 (319)
T ss_pred CCcEEEEeccHhhhC-HHHHHHHHHHhhCCCCCCeEEEEECChhhCch---------HHHhhheEeeCCCcCHHHHHHHH
Confidence 456799999998776 55667788788777778888777765521111 1112222 899999999998888
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILG 407 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 407 (597)
.... .. ...+..++..++|.|+....+.
T Consensus 182 ~~~~------~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 182 LAQG------VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHcC------CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 6531 11 2235678999999998765543
No 127
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.62 E-value=0.003 Score=58.52 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.++||-++.+++|.-.-. .++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~----------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK----------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH----------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 468999999988877665 34678999999999999998887777
No 128
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.61 E-value=0.002 Score=68.98 Aligned_cols=214 Identities=17% Similarity=0.174 Sum_probs=123.8
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChh---hhc---cCCeeEEEEecCC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSD---VKA---NFDKRIWVSASYP 238 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~~---~F~~~~wv~~~~~ 238 (597)
|..+-+|+.|..+|...+...-.. ......+-|.|.+|+|||..+..|.+... .++ .|++ +.|+.-.-
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-----~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l 468 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-----QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRL 468 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-----CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceee
Confidence 344669999999999988755442 13445999999999999999999988532 122 2332 22333222
Q ss_pred CchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhc-----CceEEEEEecccCCCCcchHHHH
Q 041007 239 RDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ-----GKKVLLVLDDLWWNAYPRYWEQL 313 (597)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~-----~kr~LLVLDdv~~~~~~~~~~~l 313 (597)
... .+++..|...+.+..... ....+.|..+.. .+.++|++|+++..- ...-+.+
T Consensus 469 ~~~----------------~~~Y~~I~~~lsg~~~~~---~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lv-tr~QdVl 528 (767)
T KOG1514|consen 469 ASP----------------REIYEKIWEALSGERVTW---DAALEALNFRFTVPKPKRSTTVVLIDELDILV-TRSQDVL 528 (767)
T ss_pred cCH----------------HHHHHHHHHhcccCcccH---HHHHHHHHHhhccCCCCCCCEEEEeccHHHHh-cccHHHH
Confidence 223 889999999988764322 222333444433 346899999884332 1123445
Q ss_pred HHhhcC-CCCCcEEEEEccCC-CCCCCcccccccccCccccce---eecCCCChHHHHHHHHHHhccCCCCCCccchHHH
Q 041007 314 MYSLKS-GSEGSRILVTRSGG-KNGTNMTEIGLGEKNGTNMME---IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPI 388 (597)
Q Consensus 314 ~~~l~~-~~~gs~IIvTtR~~-~~~~~~~~~~~~~~~~~~~~~---~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~ 388 (597)
...|.+ ..++++++|-+-.. ...+. . +....+....+ +...|.+.++-.++...++.+. ........+-+
T Consensus 529 Yn~fdWpt~~~sKLvvi~IaNTmdlPE-r---~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielv 603 (767)
T KOG1514|consen 529 YNIFDWPTLKNSKLVVIAIANTMDLPE-R---LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELV 603 (767)
T ss_pred HHHhcCCcCCCCceEEEEecccccCHH-H---HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHH
Confidence 555554 56777766553322 11110 0 00001222222 8888889888888888777543 22222334445
Q ss_pred HHHHHHhcCCchHHHHHHHhh
Q 041007 389 GRRVVGKCKGLPFAVKILGSL 409 (597)
Q Consensus 389 ~~~I~~~~~GlPLai~~~~~~ 409 (597)
+++|+.-.|-.-.|+.+.-++
T Consensus 604 arkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 604 ARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHHHhccccHHHHHHHHHHH
Confidence 666666666666666555443
No 129
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.59 E-value=0.0031 Score=64.57 Aligned_cols=127 Identities=11% Similarity=0.071 Sum_probs=74.9
Q ss_pred eEEEEEecccCCCCc--chHHHHHHhh--cCCCCCcEEEEEccCCCCCCCcccccccccCccc--cceeecCCCChHHHH
Q 041007 293 KVLLVLDDLWWNAYP--RYWEQLMYSL--KSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTN--MMEIGLGELSEEECR 366 (597)
Q Consensus 293 r~LLVLDdv~~~~~~--~~~~~l~~~l--~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~--~~~~~l~~Ls~~es~ 366 (597)
+-+|||||....... ..|+.+..-- ....+=.+||++|-+....... .. ...+ ...+.|.-.+++-|.
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~L-sk-----aLPn~vf~tI~L~Das~~~Ak 222 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPL-SK-----ALPNRVFKTISLSDASPESAK 222 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhH-HH-----hCCCCceeEEeecCCCHHHHH
Confidence 568999998543321 1222222111 1133456788888765211100 00 1111 112899999999999
Q ss_pred HHHHHHhccCCCC------------CC----ccchHHHHHHHHHhcCCchHHHHHHHhhhccCCCHH-HHHHHHhh
Q 041007 367 SLFRQIAFHGRSS------------DY----REKFEPIGRRVVGKCKGLPFAVKILGSLLRFKTSIK-EWQSVLDS 425 (597)
Q Consensus 367 ~Lf~~~~~~~~~~------------~~----~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~-~w~~~l~~ 425 (597)
.+...++...... .. ......-....+..+||--.=+..+++.++.+.+++ ...++..+
T Consensus 223 ~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 223 QYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999988542110 00 012344567788999999999999999999887765 34444443
No 130
>CHL00176 ftsH cell division protein; Validated
Probab=97.59 E-value=0.00081 Score=73.96 Aligned_cols=186 Identities=13% Similarity=0.132 Sum_probs=92.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCc--CCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEE--SGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~--~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 243 (597)
.++.|.++..+++.+.+......+. .-+...++-|.++|++|+|||+||+.+++. ... -|+.++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~------ 249 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISG------ 249 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccH------
Confidence 4577887766666555422111000 000123567999999999999999999873 221 2233221
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCC---------CcchHHH--
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNA---------YPRYWEQ-- 312 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~---------~~~~~~~-- 312 (597)
..+.... .+ .....+...+.......+++|+|||++... .......
T Consensus 250 --------------s~f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L 306 (638)
T CHL00176 250 --------------SEFVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTL 306 (638)
T ss_pred --------------HHHHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHH
Confidence 1110000 00 011223334444556788999999995331 0112222
Q ss_pred --HHHhhcC--CCCCcEEEEEccCCCCCCCcccccccccCccc-cceeecCCCChHHHHHHHHHHhccCCCCCCccchHH
Q 041007 313 --LMYSLKS--GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTN-MMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEP 387 (597)
Q Consensus 313 --l~~~l~~--~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~ 387 (597)
+...+.. ...+..||.||.... ..+ ..+. ...+ ...+.+.+.+.++-.+++..++..... ....
T Consensus 307 ~~LL~~~dg~~~~~~ViVIaaTN~~~-~LD---~ALl--RpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~ 375 (638)
T CHL00176 307 NQLLTEMDGFKGNKGVIVIAATNRVD-ILD---AALL--RPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDV 375 (638)
T ss_pred HHHHhhhccccCCCCeeEEEecCchH-hhh---hhhh--ccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhH
Confidence 2222221 234555666665431 000 0000 0000 112788888888888888887743111 1123
Q ss_pred HHHHHHHhcCC
Q 041007 388 IGRRVVGKCKG 398 (597)
Q Consensus 388 ~~~~I~~~~~G 398 (597)
....|++.+.|
T Consensus 376 ~l~~lA~~t~G 386 (638)
T CHL00176 376 SLELIARRTPG 386 (638)
T ss_pred HHHHHHhcCCC
Confidence 45678888887
No 131
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.58 E-value=0.0025 Score=62.71 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..|.|.|++|+|||+||+.+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 4677999999999999999986
No 132
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0016 Score=66.36 Aligned_cols=162 Identities=11% Similarity=0.064 Sum_probs=88.3
Q ss_pred ccc-chhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhh
Q 041007 168 FHG-RNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVAR 246 (597)
Q Consensus 168 ~vG-R~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 246 (597)
++| -+.-++.|...+.... -+....++|+.|+|||++|..+.+..--....... .+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~---------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~--------- 65 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR---------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGT--------- 65 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC---------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCc---------
Confidence 556 6667778888776332 35577999999999999999886531100100000 0000
Q ss_pred hhhhhcccchHHHHHHHHHHhccC------CCCchhhHHHHHHHHHHH----hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 247 DEISVARDRDEIRVAKAILESLKG------SVSSQVEMETVLQYINEF----VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 247 ~~~~~~~~~~~~~~~~~il~~l~~------~~~~~~~~~~~~~~l~~~----L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-...+.+...-.. ........+++.+.+... ..+.+-++|+|+++..+ ....+.+...
T Consensus 66 -----------C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-~~a~NaLLK~ 133 (329)
T PRK08058 66 -----------CTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-ASAANSLLKF 133 (329)
T ss_pred -----------CHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-HHHHHHHHHH
Confidence 0000000000000 000111223332222211 23455689999997776 5566778888
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHH
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQ 371 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~ 371 (597)
+..-+.++.+|++|.+...... -+...+. +++.+++.++..+.+..
T Consensus 134 LEEPp~~~~~Il~t~~~~~ll~---------TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LEEPSGGTTAILLTENKHQILP---------TILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hcCCCCCceEEEEeCChHhCcH---------HHHhhceeeeCCCCCHHHHHHHHHH
Confidence 8777778888888766521110 1112222 99999999999888765
No 133
>PRK12377 putative replication protein; Provisional
Probab=97.57 E-value=0.00044 Score=66.85 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=28.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
...+.|+|++|+|||+||..+++. .......++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEH
Confidence 367999999999999999999994 4444444566654
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.55 E-value=0.00084 Score=75.95 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=75.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..++|.+..++.+...+......-. .++....++.++|++|+|||+||+.++.. . +...+.++++.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~-~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~---- 523 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG-NPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEK---- 523 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC-CCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhc----
Confidence 4578888888888888764321000 01123446899999999999999999873 3 223344554432111
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCC--chhhHHHHHHHHHHHhcC-ceEEEEEecccCCCCcchHHHHHHhhcCC--
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVS--SQVEMETVLQYINEFVQG-KKVLLVLDDLWWNAYPRYWEQLMYSLKSG-- 320 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~L~~-kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-- 320 (597)
. .+...++.+.. .......+ .+.++. ..-+|+||+++..+ .+.++.+...+..+
T Consensus 524 ------------~----~~~~lig~~~gyvg~~~~~~l----~~~~~~~p~~VvllDEieka~-~~~~~~Ll~~ld~g~~ 582 (731)
T TIGR02639 524 ------------H----TVSRLIGAPPGYVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAH-PDIYNILLQVMDYATL 582 (731)
T ss_pred ------------c----cHHHHhcCCCCCcccchhhHH----HHHHHhCCCeEEEEechhhcC-HHHHHHHHHhhccCee
Confidence 0 01111221111 01111122 233333 34599999998776 67777777776543
Q ss_pred ---------CCCcEEEEEccC
Q 041007 321 ---------SEGSRILVTRSG 332 (597)
Q Consensus 321 ---------~~gs~IIvTtR~ 332 (597)
-.++.||+||..
T Consensus 583 ~d~~g~~vd~~~~iii~Tsn~ 603 (731)
T TIGR02639 583 TDNNGRKADFRNVILIMTSNA 603 (731)
T ss_pred ecCCCcccCCCCCEEEECCCc
Confidence 124557777744
No 135
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0045 Score=62.32 Aligned_cols=94 Identities=7% Similarity=-0.048 Sum_probs=65.3
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf 369 (597)
+++-++|+|+++.+. ....+.+...+..-+.++.+|++|.+...... -+...+. +.+.+++.++..+.+
T Consensus 106 g~~KV~iI~~a~~m~-~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llp---------TI~SRC~~~~~~~~~~~~~~~~L 175 (325)
T PRK06871 106 GGNKVVYIQGAERLT-EAAANALLKTLEEPRPNTYFLLQADLSAALLP---------TIYSRCQTWLIHPPEEQQALDWL 175 (325)
T ss_pred CCceEEEEechhhhC-HHHHHHHHHHhcCCCCCeEEEEEECChHhCch---------HHHhhceEEeCCCCCHHHHHHHH
Confidence 556688899998887 66778888888887788888888776521111 1111222 999999999999888
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchHHH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAV 403 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 403 (597)
..... . . ...+...++.++|.|+..
T Consensus 176 ~~~~~---~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 176 QAQSS---A--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHhc---c--C----hHHHHHHHHHcCCCHHHH
Confidence 87541 1 1 113566788999999644
No 136
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.51 E-value=0.0086 Score=68.30 Aligned_cols=51 Identities=25% Similarity=0.447 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+|.+.-+++|.+++...... .....+++.++|++|+|||++|+.+++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~----~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR----GKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh----cCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44789999999988876422110 0123458999999999999999999883
No 137
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.50 E-value=0.0005 Score=78.46 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=77.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..++|.+..++.+.+.+......-. .++....++.++|++|+|||.||+.+... .-+.....+-++++....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~-~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~----- 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE-DPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE----- 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC-CCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh-----
Confidence 4678999999999888864321000 01234457899999999999999988762 212112222222221110
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCch---hhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCC-
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQ---VEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGS- 321 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~- 321 (597)
..-...+.+..+.. .....+...+++ ....+|+||++...+ ...++.+...+..+.
T Consensus 638 ----------------~~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~-~~v~~~Llq~ld~g~l 697 (852)
T TIGR03345 638 ----------------AHTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAH-PDVLELFYQVFDKGVM 697 (852)
T ss_pred ----------------hhhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcC-HHHHHHHHHHhhccee
Confidence 00111121211111 111122233322 445799999997665 667777777775542
Q ss_pred ----------CCcEEEEEccCC
Q 041007 322 ----------EGSRILVTRSGG 333 (597)
Q Consensus 322 ----------~gs~IIvTtR~~ 333 (597)
.++.||+||...
T Consensus 698 ~d~~Gr~vd~~n~iiI~TSNlg 719 (852)
T TIGR03345 698 EDGEGREIDFKNTVILLTSNAG 719 (852)
T ss_pred ecCCCcEEeccccEEEEeCCCc
Confidence 456777887543
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.50 E-value=0.00066 Score=77.75 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|.+..++.+...+......-. .++....++.++|++|+|||+||+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~-~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLS-DPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhccc-CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999998888864321000 0112235788999999999999999986
No 139
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.50 E-value=0.0004 Score=64.70 Aligned_cols=144 Identities=23% Similarity=0.240 Sum_probs=63.5
Q ss_pred cchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhh
Q 041007 170 GRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEI 249 (597)
Q Consensus 170 GR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~ 249 (597)
.+..+-....+.|. ...++.+.|++|.|||.||.+..-+.-..+.|+.++++.-.-+.....-++..-
T Consensus 4 p~~~~Q~~~~~al~------------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~ 71 (205)
T PF02562_consen 4 PKNEEQKFALDALL------------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGD 71 (205)
T ss_dssp --SHHHHHHHHHHH------------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---
T ss_pred CCCHHHHHHHHHHH------------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCC
Confidence 34555666667676 246999999999999999998876644457788877764322110000000000
Q ss_pred hhcccchHHHHHHHHHHhccCCCCchhhHHHHHHH------HHHHhcCc---eEEEEEecccCCCCcchHHHHHHhhcCC
Q 041007 250 SVARDRDEIRVAKAILESLKGSVSSQVEMETVLQY------INEFVQGK---KVLLVLDDLWWNAYPRYWEQLMYSLKSG 320 (597)
Q Consensus 250 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~------l~~~L~~k---r~LLVLDdv~~~~~~~~~~~l~~~l~~~ 320 (597)
...+-.....-+.+.+..+... ...+.+... --.+++|+ ..++|+|++++.. ..+ +...+-..
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~----~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t-~~~---~k~ilTR~ 143 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGK----EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLT-PEE---LKMILTRI 143 (205)
T ss_dssp ------TTTHHHHHHHTTTS-T----TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG---HHH---HHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHHHhCh----HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCC-HHH---HHHHHccc
Confidence 0000000011122222222211 111111110 01233443 4699999998775 444 44445556
Q ss_pred CCCcEEEEEccCC
Q 041007 321 SEGSRILVTRSGG 333 (597)
Q Consensus 321 ~~gs~IIvTtR~~ 333 (597)
+.||++|++--..
T Consensus 144 g~~skii~~GD~~ 156 (205)
T PF02562_consen 144 GEGSKIIITGDPS 156 (205)
T ss_dssp -TT-EEEEEE---
T ss_pred CCCcEEEEecCce
Confidence 7899999996544
No 140
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.47 E-value=0.00087 Score=67.13 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=68.4
Q ss_pred cchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhh
Q 041007 170 GRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEI 249 (597)
Q Consensus 170 GR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~ 249 (597)
+|..-.....+++..... ....+-+.|+|+.|+|||.||..+++. ....-..+.++++
T Consensus 135 ~~~~~~~~~~~fi~~~~~------~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~-------------- 192 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP------GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF-------------- 192 (306)
T ss_pred HHHHHHHHHHHHHHHhhc------cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH--------------
Confidence 455555555666653321 123467999999999999999999995 3222233455554
Q ss_pred hhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHH--HHHhh-cCC-CCCcE
Q 041007 250 SVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQ--LMYSL-KSG-SEGSR 325 (597)
Q Consensus 250 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~--l~~~l-~~~-~~gs~ 325 (597)
..++..+-...... +.... +.. + .+-=||||||+.... ...|.. +...+ ... ..+..
T Consensus 193 --------~~l~~~lk~~~~~~-----~~~~~---l~~-l-~~~dlLiIDDiG~e~-~s~~~~~~ll~~Il~~R~~~~~~ 253 (306)
T PRK08939 193 --------PEFIRELKNSISDG-----SVKEK---IDA-V-KEAPVLMLDDIGAEQ-MSSWVRDEVLGVILQYRMQEELP 253 (306)
T ss_pred --------HHHHHHHHHHHhcC-----cHHHH---HHH-h-cCCCEEEEecCCCcc-ccHHHHHHHHHHHHHHHHHCCCe
Confidence 23333333332211 11222 222 2 245699999997654 445653 44443 322 35667
Q ss_pred EEEEccCC
Q 041007 326 ILVTRSGG 333 (597)
Q Consensus 326 IIvTtR~~ 333 (597)
+|+||--.
T Consensus 254 ti~TSNl~ 261 (306)
T PRK08939 254 TFFTSNFD 261 (306)
T ss_pred EEEECCCC
Confidence 88888533
No 141
>PRK06526 transposase; Provisional
Probab=97.46 E-value=0.00027 Score=68.79 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+.|+|++|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 357899999999999999999874
No 142
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.46 E-value=0.00063 Score=78.16 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=78.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..++|.+..++.+...+......-. .++....++.++|++|+|||++|+.+... ....-...+.++++.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~-~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~---- 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS-DPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEK---- 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhccc----
Confidence 4588999999999998875421000 01123457889999999999999999873 2222223344444432111
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCc-eEEEEEecccCCCCcchHHHHHHhhcCC----
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGK-KVLLVLDDLWWNAYPRYWEQLMYSLKSG---- 320 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k-r~LLVLDdv~~~~~~~~~~~l~~~l~~~---- 320 (597)
.. . ...++.+ +.....++ ...+.+.++.+ ..+|+||++...+ ...+..+...+..+
T Consensus 638 ------------~~-~---~~l~g~~-~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~-~~v~~~Ll~~l~~g~l~d 698 (852)
T TIGR03346 638 ------------HS-V---ARLIGAP-PGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAH-PDVFNVLLQVLDDGRLTD 698 (852)
T ss_pred ------------ch-H---HHhcCCC-CCccCccc-ccHHHHHHHcCCCcEEEEeccccCC-HHHHHHHHHHHhcCceec
Confidence 00 0 1111211 11100000 01122222223 3589999998776 77888888877543
Q ss_pred -------CCCcEEEEEccCC
Q 041007 321 -------SEGSRILVTRSGG 333 (597)
Q Consensus 321 -------~~gs~IIvTtR~~ 333 (597)
-.++.||+||...
T Consensus 699 ~~g~~vd~rn~iiI~TSn~g 718 (852)
T TIGR03346 699 GQGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred CCCeEEecCCcEEEEeCCcc
Confidence 1345588887654
No 143
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.43 E-value=0.0023 Score=57.87 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=72.6
Q ss_pred cchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhh------------------ccCCeeE
Q 041007 170 GRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVK------------------ANFDKRI 231 (597)
Q Consensus 170 GR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F~~~~ 231 (597)
|-+...+.|...+.... -+..+.++|+.|+||+++|..+.+..--. ...+...
T Consensus 1 gq~~~~~~L~~~~~~~~---------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~ 71 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR---------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFI 71 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEE
T ss_pred CcHHHHHHHHHHHHcCC---------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceE
Confidence 45666777777776432 35578999999999999999886631111 1122233
Q ss_pred EEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhc-----CceEEEEEecccCCCC
Q 041007 232 WVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQ-----GKKVLLVLDDLWWNAY 306 (597)
Q Consensus 232 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~-----~kr~LLVLDdv~~~~~ 306 (597)
|+.-..... ....+++. .+.+.+. ++.=++||||++.+.
T Consensus 72 ~~~~~~~~~----------------------------------~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~- 115 (162)
T PF13177_consen 72 IIKPDKKKK----------------------------------SIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLT- 115 (162)
T ss_dssp EEETTTSSS----------------------------------SBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS--
T ss_pred EEecccccc----------------------------------hhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhh-
Confidence 333222100 11222222 2222222 356699999998887
Q ss_pred cchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 307 PRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 307 ~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
......++..+..-+.++.+|++|.+.
T Consensus 116 ~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 116 EEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 778888999998888899999998876
No 144
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.00045 Score=72.99 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=112.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
++++|-+.-...|...+.... -..--...|+-|+||||+|+.++.-.--... ....++..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r---------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~---- 75 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR---------IAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGK---- 75 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc---------chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchh----
Confidence 457999999999999998543 2456678999999999999988763111100 00001111
Q ss_pred hhhhhhcccchHHHHHHHHHHhc--------cCCCCchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILESL--------KGSVSSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l--------~~~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
-...+.|...- .......++...+.+.+.-. ..++.=+.|+|+|+-.. ...|..++..
T Consensus 76 ------------C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-~~afNALLKT 142 (515)
T COG2812 76 ------------CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-KQAFNALLKT 142 (515)
T ss_pred ------------hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-HHHHHHHhcc
Confidence 11112222110 00111122222222222111 12455589999998665 7788998888
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+..-......|+.|.+....+. -+...+. |.++.++.++....+...+....... ..+...-|++.
T Consensus 143 LEEPP~hV~FIlATTe~~Kip~---------TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~----e~~aL~~ia~~ 209 (515)
T COG2812 143 LEEPPSHVKFILATTEPQKIPN---------TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI----EEDALSLIARA 209 (515)
T ss_pred cccCccCeEEEEecCCcCcCch---------hhhhccccccccCCCHHHHHHHHHHHHHhcCCcc----CHHHHHHHHHH
Confidence 8887888888888887743332 1222233 99999999999998888875433222 24455677777
Q ss_pred cCCch
Q 041007 396 CKGLP 400 (597)
Q Consensus 396 ~~GlP 400 (597)
..|..
T Consensus 210 a~Gs~ 214 (515)
T COG2812 210 AEGSL 214 (515)
T ss_pred cCCCh
Confidence 77744
No 145
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.42 E-value=0.0022 Score=69.39 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=35.2
Q ss_pred CCccccchhhHHHHHHHhhCCCCCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDE--ESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
-.+++|-+..++++.+++......+ ...+...++-+.++|++|+|||+||+.+++.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3567888877766655443111000 0000123456899999999999999999873
No 146
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0067 Score=61.61 Aligned_cols=95 Identities=12% Similarity=-0.024 Sum_probs=65.0
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf 369 (597)
+++-++|+|+++.++ ...-+.+...|..-+.++.+|++|.+...... -+...+. +.+.+++.+++.+.+
T Consensus 107 g~~kV~iI~~ae~m~-~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp---------TIrSRCq~~~~~~~~~~~~~~~L 176 (334)
T PRK07993 107 GGAKVVWLPDAALLT-DAAANALLKTLEEPPENTWFFLACREPARLLA---------TLRSRCRLHYLAPPPEQYALTWL 176 (334)
T ss_pred CCceEEEEcchHhhC-HHHHHHHHHHhcCCCCCeEEEEEECChhhChH---------HHHhccccccCCCCCHHHHHHHH
Confidence 566799999998877 66778888888877778888887776521110 1111122 899999999998887
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVK 404 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 404 (597)
..... .. .+.+..+++.++|.|....
T Consensus 177 ~~~~~-----~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 177 SREVT-----MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHccC-----CC----HHHHHHHHHHcCCCHHHHH
Confidence 65421 11 2346788999999996443
No 147
>PRK06921 hypothetical protein; Provisional
Probab=97.38 E-value=0.0011 Score=65.13 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=28.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhcc-CCeeEEEEe
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKAN-FDKRIWVSA 235 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~~ 235 (597)
...+.++|++|+|||.||..+++. .... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467999999999999999999984 3333 344566653
No 148
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0053 Score=61.62 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=65.6
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf 369 (597)
++.-++|+|+++.++ ....+.+...+..-+.++.+|++|.+...... -+...+. +.+.+++.+++.+.+
T Consensus 107 ~~~kV~iI~~ae~m~-~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp---------TI~SRCq~~~~~~~~~~~~~~~L 176 (319)
T PRK06090 107 NGYRLFVIEPADAMN-ESASNALLKTLEEPAPNCLFLLVTHNQKRLLP---------TIVSRCQQWVVTPPSTAQAMQWL 176 (319)
T ss_pred CCceEEEecchhhhC-HHHHHHHHHHhcCCCCCeEEEEEECChhhChH---------HHHhcceeEeCCCCCHHHHHHHH
Confidence 445689999998877 67788888888877778888777766521111 1112222 899999999999888
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKIL 406 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 406 (597)
.... . . ....+++.++|.|+....+
T Consensus 177 ~~~~---~--~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 177 KGQG---I--T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHcC---C--c-------hHHHHHHHcCCCHHHHHHH
Confidence 6531 1 1 1356789999999977655
No 149
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.38 E-value=0.0013 Score=63.54 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=26.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEE
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVS 234 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 234 (597)
...+.++|.+|+|||+||..+++. ....-..+++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE
Confidence 457899999999999999999984 333333455554
No 150
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0021 Score=62.48 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=51.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhh--ccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVK--ANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 273 (597)
-.++|.++||+|.|||+|.+.+++...++ +.|....-+-++. ..++...+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins--------------------hsLFSKWFsE------ 229 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS--------------------HSLFSKWFSE------ 229 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh--------------------hHHHHHHHhh------
Confidence 35789999999999999999999975443 3444444343322 3333333322
Q ss_pred chhhHHHHHHHHHHHhcCce--EEEEEeccc
Q 041007 274 SQVEMETVLQYINEFVQGKK--VLLVLDDLW 302 (597)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~kr--~LLVLDdv~ 302 (597)
+...+..+.+.|++.+.++. +++.+|.|.
T Consensus 230 SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 230 SGKLVAKMFQKIQELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHH
Confidence 22345666777778777655 455689884
No 151
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.35 E-value=0.00071 Score=68.32 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
..+.++|++|+|||.||..+++. ....-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 67999999999999999999984 3333335666654
No 152
>PRK09183 transposase/IS protein; Provisional
Probab=97.34 E-value=0.0011 Score=65.01 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+.|+|++|+|||+||..+.+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999999773
No 153
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0061 Score=61.83 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=64.3
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf 369 (597)
++.-++|+|+++.++ ....+.+...+..-.+++.+|++|.+...... -+...+ .+.+.+++.++..+.+
T Consensus 131 ~~~kV~iI~~ae~m~-~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLp---------TI~SRcq~i~~~~~~~~~~~~~L 200 (342)
T PRK06964 131 GGARVVVLYPAEALN-VAAANALLKTLEEPPPGTVFLLVSARIDRLLP---------TILSRCRQFPMTVPAPEAAAAWL 200 (342)
T ss_pred CCceEEEEechhhcC-HHHHHHHHHHhcCCCcCcEEEEEECChhhCcH---------HHHhcCEEEEecCCCHHHHHHHH
Confidence 455688999998887 77888899888877778877777666521111 111122 2999999999999888
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILG 407 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 407 (597)
.... . . + ...++..++|.|+....+.
T Consensus 201 ~~~~---~--~--~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 201 AAQG---V--A--D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred HHcC---C--C--h-----HHHHHHHcCCCHHHHHHHH
Confidence 7641 1 1 1 1346788999997554443
No 154
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0021 Score=66.43 Aligned_cols=148 Identities=20% Similarity=0.228 Sum_probs=81.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
.....+.+.|++|+|||+||..++. ...|+.+--++.. ++ ++- +.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe---~m--------------------------iG~--sE 580 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPE---DM--------------------------IGL--SE 580 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChH---Hc--------------------------cCc--cH
Confidence 4677889999999999999999976 3567764433311 11 000 11
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCC---------cchHHHHHHhhcCC-CCCcE--EEEEccCCCCCCCcccc
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAY---------PRYWEQLMYSLKSG-SEGSR--ILVTRSGGKNGTNMTEI 342 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~---------~~~~~~l~~~l~~~-~~gs~--IIvTtR~~~~~~~~~~~ 342 (597)
......+...+...-+..--+||+||+...-+ ......+...|... .+|-+ |+-||...
T Consensus 581 saKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~--------- 651 (744)
T KOG0741|consen 581 SAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR--------- 651 (744)
T ss_pred HHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH---------
Confidence 12233344444555556678999999843320 11223344444332 23333 44454444
Q ss_pred cccccCccccce--------eecCCCCh-HHHHHHHHHHhccCCCCCCccchHHHHHHHHHhc
Q 041007 343 GLGEKNGTNMME--------IGLGELSE-EECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKC 396 (597)
Q Consensus 343 ~~~~~~~~~~~~--------~~l~~Ls~-~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~ 396 (597)
.+...++ |.+..++. ++..+.++..- ...+...+.++.+...+|
T Consensus 652 -----~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 652 -----EVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred -----HHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 4444433 88888887 66677666542 122334455666666666
No 155
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.33 E-value=0.00054 Score=65.32 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
+-.++|.|..|+|||||+..+.. .....|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34788999999999999999987 47778877776643
No 156
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.32 E-value=0.00073 Score=62.19 Aligned_cols=36 Identities=33% Similarity=0.690 Sum_probs=29.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEE
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWV 233 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 233 (597)
...+|.|.|++|+||||+|+.++. .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 567999999999999999999998 555556555555
No 157
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.31 E-value=0.0014 Score=62.10 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=33.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
+...++.|+|++|+|||+++.+++.. ....-..++|++...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC
Confidence 45689999999999999999998873 333456789998865
No 158
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.30 E-value=0.0021 Score=69.67 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+++|.+..++.+...+... ....|.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~----------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP----------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC----------CCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999998876532 345778999999999999999976
No 159
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.00071 Score=63.06 Aligned_cols=112 Identities=14% Similarity=0.065 Sum_probs=59.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc--h
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS--Q 275 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~--~ 275 (597)
.++.|+|+.|.||||++..+... ...+-..++.+.- .++. ......++..++..... .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k~--~~d~----------------~~~~~~i~~~lg~~~~~~~~ 62 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFKP--AIDD----------------RYGEGKVVSRIGLSREAIPV 62 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEec--cccc----------------cccCCcEecCCCCcccceEe
Confidence 47889999999999999998873 3333333333321 1111 11111222333221111 1
Q ss_pred hhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 276 VEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 276 ~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.....+...+.+ ..++.-+||+|.++..+ .+....+...+ ...|..||+|.+..
T Consensus 63 ~~~~~~~~~~~~-~~~~~dvviIDEaq~l~-~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 63 SSDTDIFELIEE-EGEKIDCVLIDEAQFLD-KEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CChHHHHHHHHh-hCCCCCEEEEEccccCC-HHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 223344444444 33445689999996543 12222233222 35678999998876
No 160
>PRK04132 replication factor C small subunit; Provisional
Probab=97.27 E-value=0.006 Score=68.72 Aligned_cols=156 Identities=13% Similarity=0.011 Sum_probs=93.9
Q ss_pred Ec--CCCCcHHHHHHHHhCChhhhccCC-eeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHH
Q 041007 203 LG--NEGIGKTALARQVFDDSDVKANFD-KRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEME 279 (597)
Q Consensus 203 ~G--~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 279 (597)
.| |.++||||+|..++++. ....+. ..+-++++..... +..+.++..+....+.
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgi-----------------d~IR~iIk~~a~~~~~----- 626 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGI-----------------NVIREKVKEFARTKPI----- 626 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccH-----------------HHHHHHHHHHHhcCCc-----
Confidence 36 88999999999999842 112222 2455666643332 2333333322111000
Q ss_pred HHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecC
Q 041007 280 TVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLG 358 (597)
Q Consensus 280 ~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 358 (597)
-..+.-++|||+++..+ ....+.+...+......+++|+++.+...... .+...|. +.+.
T Consensus 627 ---------~~~~~KVvIIDEaD~Lt-~~AQnALLk~lEep~~~~~FILi~N~~~kIi~---------tIrSRC~~i~F~ 687 (846)
T PRK04132 627 ---------GGASFKIIFLDEADALT-QDAQQALRRTMEMFSSNVRFILSCNYSSKIIE---------PIQSRCAIFRFR 687 (846)
T ss_pred ---------CCCCCEEEEEECcccCC-HHHHHHHHHHhhCCCCCeEEEEEeCChhhCch---------HHhhhceEEeCC
Confidence 01245799999998886 56677777777666667788777665521110 1122232 9999
Q ss_pred CCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHH
Q 041007 359 ELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVK 404 (597)
Q Consensus 359 ~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~ 404 (597)
+++.++....+...+...+... ..+....|++.|+|.+-.+.
T Consensus 688 ~ls~~~i~~~L~~I~~~Egi~i----~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 688 PLRDEDIAKRLRYIAENEGLEL----TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 9999999988877664322111 14567899999999885443
No 161
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.014 Score=57.92 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=40.6
Q ss_pred ccccchhhHHHHHHHhhCCCCC-C--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccC
Q 041007 167 EFHGRNAEKQKILQLLKGESSD-E--ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANF 227 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~-~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 227 (597)
.+=|-++.+++|.+.+.-.-.+ + ..-+-..++=|.++|++|.|||-||++|++ +....|
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF 213 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF 213 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE
Confidence 3457899999998887533210 0 000113467799999999999999999999 455444
No 162
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.22 E-value=0.0012 Score=74.68 Aligned_cols=50 Identities=28% Similarity=0.465 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|.+.-+++|.++|...... ......++.++|++|+||||+++.++.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~----~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV----NKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc----ccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999888732210 012456899999999999999999987
No 163
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.21 E-value=0.0024 Score=61.33 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=31.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEec
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSAS 236 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 236 (597)
...++.|+|++|+|||++|.+++.. ....-..++|++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC
Confidence 4679999999999999999999873 33334668899876
No 164
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.21 E-value=0.00082 Score=61.79 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
..-+.|+|++|+|||.||..+.+. ...+=..+.|++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec
Confidence 457999999999999999999884 3222233566653
No 165
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.20 E-value=0.0011 Score=60.26 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=34.5
Q ss_pred cccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 168 FHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 168 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
++|.+..+.++.+.+..... ....|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~--------~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS--------SDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT--------STS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC--------CCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 47888888888888876553 3367789999999999999999884
No 166
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0034 Score=64.00 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=74.2
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhc-------------------cC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKA-------------------NF 227 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F 227 (597)
.++|-+....++..+...... ....+.++|++|+||||+|..+.+...-.. .+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~--------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR--------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNH 73 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC--------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCC
Confidence 356777778888888874332 233599999999999999999987421111 11
Q ss_pred CeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCc
Q 041007 228 DKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYP 307 (597)
Q Consensus 228 ~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~ 307 (597)
+.+..+..+.....- -..+..+.+.+...... ..++.-+++||++...+ .
T Consensus 74 ~d~lel~~s~~~~~~-------------i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt-~ 123 (325)
T COG0470 74 PDFLELNPSDLRKID-------------IIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLT-E 123 (325)
T ss_pred CceEEecccccCCCc-------------chHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHh-H
Confidence 223333333222210 00122222222211110 02456799999997766 4
Q ss_pred chHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 308 RYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 308 ~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
+.-..+...+......+.+|++|...
T Consensus 124 ~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 124 DAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred HHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 45566666666777788888888744
No 167
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.18 E-value=0.0017 Score=72.78 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=74.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..++|.++.++.|...+......-. .++.....+.++|++|+|||.||+.++.. ... ..+.++++.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~-~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~---- 527 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLG-HEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMER---- 527 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhcccc-CCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhccc----
Confidence 3478999999988888873211000 01223457899999999999999999873 322 2233444322111
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcC-ceEEEEEecccCCCCcchHHHHHHhhcCCC---
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQG-KKVLLVLDDLWWNAYPRYWEQLMYSLKSGS--- 321 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~-kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~--- 321 (597)
. .+ ..+.+..+.....+ ....+.+.+.. ...+|+||++...+ .+.++.+...+..+.
T Consensus 528 ------------~----~~-~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~-~~v~~~LLq~ld~G~ltd 588 (758)
T PRK11034 528 ------------H----TV-SRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAH-PDVFNLLLQVMDNGTLTD 588 (758)
T ss_pred ------------c----cH-HHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhh-HHHHHHHHHHHhcCeeec
Confidence 0 11 11211111110000 01122223333 34699999998776 667777777765321
Q ss_pred --------CCcEEEEEcc
Q 041007 322 --------EGSRILVTRS 331 (597)
Q Consensus 322 --------~gs~IIvTtR 331 (597)
.++-||+||-
T Consensus 589 ~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 589 NNGRKADFRNVVLVMTTN 606 (758)
T ss_pred CCCceecCCCcEEEEeCC
Confidence 2445777774
No 168
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0021 Score=62.68 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=28.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
+..-+.++|++|+|||.||.++.+. ....--.+.++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH
Confidence 3568999999999999999999995 4332233555554
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.17 E-value=0.0014 Score=75.07 Aligned_cols=142 Identities=15% Similarity=0.217 Sum_probs=77.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..++|.+..++.+...+......-. .++....++.++|++|+|||+||+.+.+. .-+.-...+-++++.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~-~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~---- 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK-NPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEK---- 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc-CCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccc----
Confidence 5678999999999888763221000 01223346789999999999999998762 2111122333333322111
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCce-EEEEEecccCCCCcchHHHHHHhhcCC----
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKK-VLLVLDDLWWNAYPRYWEQLMYSLKSG---- 320 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr-~LLVLDdv~~~~~~~~~~~l~~~l~~~---- 320 (597)
.. +...++.+ +.....++ ...+.+.++.++ .+++||++...+ ...++.+...+..+
T Consensus 582 ------------~~----~~~l~g~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~-~~v~~~Llq~le~g~~~d 642 (821)
T CHL00095 582 ------------HT----VSKLIGSP-PGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAH-PDIFNLLLQILDDGRLTD 642 (821)
T ss_pred ------------cc----HHHhcCCC-CcccCcCc-cchHHHHHHhCCCeEEEECChhhCC-HHHHHHHHHHhccCceec
Confidence 00 01111111 11000000 112333444444 588999998776 77788888777643
Q ss_pred -------CCCcEEEEEccCC
Q 041007 321 -------SEGSRILVTRSGG 333 (597)
Q Consensus 321 -------~~gs~IIvTtR~~ 333 (597)
..++.+|+||...
T Consensus 643 ~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 643 SKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred CCCcEEecCceEEEEeCCcc
Confidence 2456677777644
No 170
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.16 E-value=0.006 Score=69.29 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCC---cCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDE---ESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+.|.+..+++|.+.+...-... ..-+-..++-|.++|++|+|||+||+.+++.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 456788888887777664211100 0000123456899999999999999999983
No 171
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.15 E-value=0.0057 Score=69.50 Aligned_cols=54 Identities=26% Similarity=0.312 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHhhCCCCC-C--cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSD-E--ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~-~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+.+.|.+..+++|.+++...-.. + ..-+-...+.|.|+|++|+|||+||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 45789999999998877422110 0 000012346789999999999999999988
No 172
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.14 E-value=0.0027 Score=64.38 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=61.9
Q ss_pred HHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccC-Ce-eEEEEecCCCchhhhhhhhhhhc
Q 041007 175 KQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANF-DK-RIWVSASYPRDEIRVARDEISVA 252 (597)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv~~~~~~~~~~~~~~~~~~~ 252 (597)
..++++.+..-. ....+.|+|++|+|||||++.+++. +.... +. ++|+.+.+....
T Consensus 120 ~~RvID~l~PiG---------kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~E----------- 177 (380)
T PRK12608 120 SMRVVDLVAPIG---------KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEE----------- 177 (380)
T ss_pred hHhhhhheeecC---------CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCC-----------
Confidence 345777776433 3457799999999999999998883 33322 33 467666665443
Q ss_pred ccchHHHHHHHHHHhccCCCCc--hhh---HHHHHHHHHHHh--cCceEEEEEecc
Q 041007 253 RDRDEIRVAKAILESLKGSVSS--QVE---METVLQYINEFV--QGKKVLLVLDDL 301 (597)
Q Consensus 253 ~~~~~~~~~~~il~~l~~~~~~--~~~---~~~~~~~l~~~L--~~kr~LLVLDdv 301 (597)
..++++.+...+.....+ ... .......+.+++ .+++++||+|++
T Consensus 178 ----V~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 178 ----VTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ----HHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 156666666666553321 111 111222222333 388999999999
No 173
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.00068 Score=61.68 Aligned_cols=35 Identities=31% Similarity=0.618 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhh-ccCCeeEE
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVK-ANFDKRIW 232 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 232 (597)
+.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999853333 34666665
No 174
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.12 E-value=0.0018 Score=58.41 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc
Q 041007 199 VIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD 240 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 240 (597)
++.|+|++|+|||+++..++.. ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999873 333345677887665443
No 175
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.10 E-value=0.0035 Score=66.73 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=33.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.++.|.+..++.+.............-+-..++-|.++|++|+|||.+|+.+++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 3466776666555543211100000000124577999999999999999999883
No 176
>PHA00729 NTP-binding motif containing protein
Probab=97.07 E-value=0.0034 Score=59.27 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999883
No 177
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0055 Score=65.99 Aligned_cols=165 Identities=19% Similarity=0.262 Sum_probs=92.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+-+|-++-.++|++.|.-.... ..-..++++++||+|||||+|++.++. .....| +-+++++..+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~----~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDE---- 389 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT----KKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDE---- 389 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh----ccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccH----
Confidence 45679999999999998522110 023458999999999999999999998 555555 22444444443
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCc--hhhHHHHHHHHHHHhcCceEEEEEecccCCCCc---chHHHHHHhhcCC
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSS--QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYP---RYWEQLMYSLKSG 320 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~---~~~~~l~~~l~~~ 320 (597)
.+ +.+.... ..-...+++.+++. +.++-|++||.++.+... +--..++..|.+.
T Consensus 390 ------------AE--------IRGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPE 448 (782)
T COG0466 390 ------------AE--------IRGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPE 448 (782)
T ss_pred ------------HH--------hccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHh
Confidence 11 1111100 00112233333333 446678889998654311 1122344444321
Q ss_pred CC--------------CcEEEEEccCCCC-CCCcccccccccCccccce-eecCCCChHHHHHHHHHHh
Q 041007 321 SE--------------GSRILVTRSGGKN-GTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLFRQIA 373 (597)
Q Consensus 321 ~~--------------gs~IIvTtR~~~~-~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf~~~~ 373 (597)
.+ ...+.|||-+... .+. .....+. |++.+.+++|=.++-.+++
T Consensus 449 QN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~---------PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 449 QNNTFSDHYLEVPYDLSKVMFIATANSLDTIPA---------PLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hcCchhhccccCccchhheEEEeecCccccCCh---------HHhcceeeeeecCCChHHHHHHHHHhc
Confidence 11 1234566655521 111 1222333 9999999999888777665
No 178
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.025 Score=59.85 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=40.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDE--ESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+=|-+..+.+|.+++..-...+ ..-+-..++=|.++||+|+|||.||+.+++.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge 246 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE 246 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh
Confidence 456689999999988886533211 0011234667899999999999999999994
No 179
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.01 E-value=0.0025 Score=53.23 Aligned_cols=21 Identities=52% Similarity=1.037 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 041007 200 IWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 200 v~I~G~gGiGKTtLA~~v~~~ 220 (597)
|.|+|++|+|||+||..++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998874
No 180
>PTZ00494 tuzin-like protein; Provisional
Probab=97.01 E-value=0.059 Score=55.25 Aligned_cols=170 Identities=11% Similarity=0.024 Sum_probs=101.3
Q ss_pred ccCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 162 VIDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 162 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
...+..+|.|+.|-..+.+.|...+. ..+++++++|.-|.||++|.+.....+ --..++|.+...
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~-------aHPRIvV~TG~~GcGKSslcRsAvrkE-----~~paV~VDVRg~--- 431 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP-------SHPRIVALAGGSGGGRCVPCRRAVRVE-----GVALVHVDVGGT--- 431 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC-------CCCcEEEEecCCCCCchHHHHHHHHHc-----CCCeEEEEecCC---
Confidence 55678899999999999998886653 578999999999999999999886632 234567777655
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccCCCCc--hhhHHHHHHHHHH---HhcCceEEEEEecccCCCCcchHHHHH--
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKGSVSS--QVEMETVLQYINE---FVQGKKVLLVLDDLWWNAYPRYWEQLM-- 314 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~---~L~~kr~LLVLDdv~~~~~~~~~~~l~-- 314 (597)
++.++.+.+.++.+.-+ .+-++-+.+.... ...++.-+||+-=- ..+ ++..+.
T Consensus 432 ----------------EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGs---sL~RVYnE 491 (664)
T PTZ00494 432 ----------------EDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGS---DLGRVYGE 491 (664)
T ss_pred ----------------cchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCC---cHHHHHHH
Confidence 55677888888876533 1222333333332 23355555554311 111 222211
Q ss_pred -HhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHh
Q 041007 315 -YSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIA 373 (597)
Q Consensus 315 -~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~ 373 (597)
..|.....-|+|++----+ ...+....++..+. |.+.+|+.++|.++-.+..
T Consensus 492 ~vaLacDrRlCHvv~EVplE--SLT~~n~~LPRLDF-----y~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 492 VVSLVSDCQACHIVLAVPMK--ALTPLNVSSRRLDF-----YCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred HHHHHccchhheeeeechHh--hhchhhccCcccee-----EecCCcCHHHHHHHHhccc
Confidence 1233445556777643222 11111111111111 8899999999988776654
No 181
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.0045 Score=56.66 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=61.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch-hhhhhhhhhh-cccchHHHHHHHHHHhccCCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE-IRVARDEISV-ARDRDEIRVAKAILESLKGSVS 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~il~~l~~~~~ 273 (597)
...+++|.|+.|.|||||.+.++.-. ....+.+++.-...... .......... .+..... ...+.+.+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~--~~t~~e~l----- 96 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF--SGTIRENI----- 96 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhc--cchHHHHh-----
Confidence 34699999999999999999998731 22334343321100000 0000000000 0000000 00111111
Q ss_pred chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 274 SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
...-+...-.+...+..++-+|+||+-...-+......+...+.....+..||++|.+.
T Consensus 97 -LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~ 155 (171)
T cd03228 97 -LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRL 155 (171)
T ss_pred -hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 01111222235555666788999999755444555555555554433457788888765
No 182
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.00 E-value=0.0076 Score=58.25 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=32.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
+...++.|+|++|+|||+|+.++... ....=..++|++.....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~~ 65 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENTS 65 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCCH
Confidence 45789999999999999999999653 22233467888886554
No 183
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.99 E-value=0.0062 Score=58.16 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=31.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
...++.|+|++|+|||+++.+++.. ....-..++|++....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCC
Confidence 5679999999999999999999873 33333456788755443
No 184
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.99 E-value=0.027 Score=56.77 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++.++|+|++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999994
No 185
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.99 E-value=0.006 Score=58.60 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=32.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccC------CeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANF------DKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~~~~~~~~ 241 (597)
...++.|+|++|+|||+|+.+++.. ..... ..++|++....++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~ 67 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRP 67 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCH
Confidence 5679999999999999999998763 22222 45788887665543
No 186
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.96 E-value=0.0092 Score=53.25 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=34.9
Q ss_pred HHHHHHHhcC-ceEEEEEecccCCC--CcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 282 LQYINEFVQG-KKVLLVLDDLWWNA--YPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~-kr~LLVLDdv~~~~--~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+..++.+.. +-=|||||++-..- ..-..+.+...+.....+..||+|.|+.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 3334444443 44599999984321 1225567777787788889999999987
No 187
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.0086 Score=60.58 Aligned_cols=72 Identities=13% Similarity=0.046 Sum_probs=44.9
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf 369 (597)
+++-++|+|++...+ ...-..+...+.....++.+|++|.+...... .+...+. +.+.+++.+++.+.+
T Consensus 112 ~~~kV~iiEp~~~Ld-~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~---------ti~SRc~~~~~~~~~~~~~~~~L 181 (325)
T PRK08699 112 GGLRVILIHPAESMN-LQAANSLLKVLEEPPPQVVFLLVSHAADKVLP---------TIKSRCRKMVLPAPSHEEALAYL 181 (325)
T ss_pred CCceEEEEechhhCC-HHHHHHHHHHHHhCcCCCEEEEEeCChHhChH---------HHHHHhhhhcCCCCCHHHHHHHH
Confidence 344455678887766 55666677777655556777777776521110 1111122 899999999998888
Q ss_pred HHH
Q 041007 370 RQI 372 (597)
Q Consensus 370 ~~~ 372 (597)
...
T Consensus 182 ~~~ 184 (325)
T PRK08699 182 RER 184 (325)
T ss_pred Hhc
Confidence 653
No 188
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.94 E-value=0.00076 Score=59.30 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=62.9
Q ss_pred ccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhh-hccCCeeEEEEecCCCchhhhhhh
Q 041007 169 HGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDV-KANFDKRIWVSASYPRDEIRVARD 247 (597)
Q Consensus 169 vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~ 247 (597)
||+...++++.+.+..... ....|.|+|..|+||+++|+.+++.... ...|.. +.+.. .
T Consensus 1 vG~S~~~~~l~~~l~~~a~--------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~---~------ 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK--------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCAS---L------ 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC--------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHC---T------
T ss_pred CCCCHHHHHHHHHHHHHhC--------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhh---C------
Confidence 5777778888777765443 3467899999999999999988774221 111111 00000 0
Q ss_pred hhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEE
Q 041007 248 EISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRI 326 (597)
Q Consensus 248 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~I 326 (597)
+ .+.+.. -+.-.|+|+|+...+ ......+...+.. ...+.++
T Consensus 61 -----------------------------~----~~~l~~---a~~gtL~l~~i~~L~-~~~Q~~L~~~l~~~~~~~~Rl 103 (138)
T PF14532_consen 61 -----------------------------P----AELLEQ---AKGGTLYLKNIDRLS-PEAQRRLLDLLKRQERSNVRL 103 (138)
T ss_dssp -----------------------------C----HHHHHH---CTTSEEEEECGCCS--HHHHHHHHHHHHHCTTTTSEE
T ss_pred -----------------------------c----HHHHHH---cCCCEEEECChHHCC-HHHHHHHHHHHHhcCCCCeEE
Confidence 0 111111 144567899997766 4455556666653 3677899
Q ss_pred EEEccCC
Q 041007 327 LVTRSGG 333 (597)
Q Consensus 327 IvTtR~~ 333 (597)
|.||..+
T Consensus 104 I~ss~~~ 110 (138)
T PF14532_consen 104 IASSSQD 110 (138)
T ss_dssp EEEECC-
T ss_pred EEEeCCC
Confidence 9999876
No 189
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.94 E-value=0.0086 Score=58.79 Aligned_cols=176 Identities=22% Similarity=0.228 Sum_probs=92.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC-hhhhccCCeeEEEEecCCCchhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD-SDVKANFDKRIWVSASYPRDEIRV 244 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~wv~~~~~~~~~~~ 244 (597)
..++|-.++...+..++....- -+....|.|+||.|.|||+|......+ .++.++ .+-|...+.....
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~d-- 92 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTD-- 92 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhh--
Confidence 3588999999999988874432 134567899999999999998887775 122223 3334444433220
Q ss_pred hhhhhhhcccchHHHHHHHHHHhcc----CCCCc----hhhHHHHHHHHHHHhc--CceEEEEEecccCCCCcchHHHHH
Q 041007 245 ARDEISVARDRDEIRVAKAILESLK----GSVSS----QVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAYPRYWEQLM 314 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~----~~~~~----~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~~~~~~~l~ 314 (597)
.-.++.|.+++. ..... ..+...+...+..--+ +.+++.|+|.++-.- ...-..+.
T Consensus 93 -------------k~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~-~h~rQtll 158 (408)
T KOG2228|consen 93 -------------KIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFA-PHSRQTLL 158 (408)
T ss_pred -------------HHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccc-cchhhHHH
Confidence 223344444432 22111 2233333333332111 235788888774222 11222222
Q ss_pred -Hhhc----CCCCCcEEEEEccCCCCCCCcccccccccCccccce----eecCCCChHHHHHHHHHHh
Q 041007 315 -YSLK----SGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME----IGLGELSEEECRSLFRQIA 373 (597)
Q Consensus 315 -~~l~----~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~----~~l~~Ls~~es~~Lf~~~~ 373 (597)
..|. ...+-+.|-+|||-.. ..+....|..... +-+++++-++...+++...
T Consensus 159 YnlfDisqs~r~Piciig~Ttrld~-------lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 159 YNLFDISQSARAPICIIGVTTRLDI-------LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHhhcCCCeEEEEeeccccH-------HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 2222 2344566778888651 1111111211111 5566677788888888766
No 190
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.93 E-value=0.006 Score=59.00 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=34.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhcc----CCeeEEEEecCCCch
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKAN----FDKRIWVSASYPRDE 241 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~ 241 (597)
+...++.|+|++|+|||+|+.+++-....... -..++|++....+..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~ 67 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP 67 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCH
Confidence 35679999999999999999999743122221 357899988775543
No 191
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.92 E-value=0.0004 Score=61.15 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 041007 200 IWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 200 v~I~G~gGiGKTtLA~~v~~ 219 (597)
|.|+|++|+|||+||+.+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999988
No 192
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.91 E-value=0.0025 Score=57.94 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc
Q 041007 199 VIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD 240 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 240 (597)
++.|.|.+|+|||++|.++... ....++++.-...++
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d 37 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFD 37 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCC
Confidence 3679999999999999999762 223566666555554
No 193
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.91 E-value=0.0048 Score=56.85 Aligned_cols=127 Identities=15% Similarity=0.054 Sum_probs=62.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhh-cccc--hHHHHHHHHHHhccCCCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISV-ARDR--DEIRVAKAILESLKGSVS 273 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~il~~l~~~~~ 273 (597)
..+++|.|+.|+|||||++.++... ....+.+++.-................ .+.. ....+...+. .
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~-------~ 97 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLG-------R 97 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhc-------c
Confidence 4689999999999999999998732 122333433211000000000000000 0000 0011111110 0
Q ss_pred chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 274 SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
....-+...-.+...+-.++-+++||+....-+....+.+...+.....+..||++|.+.
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 157 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHL 157 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 111112223335555667788999999765444555555555554433467788888765
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.91 E-value=0.00099 Score=67.19 Aligned_cols=50 Identities=18% Similarity=0.400 Sum_probs=41.3
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.++|-++.++++++++...... .....+++.|+|++|+||||||..+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g----~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQG----LEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhc----CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999754421 1234689999999999999999999884
No 195
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.024 Score=59.97 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=72.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
+.=|.++||+|+|||-||++|+| +..-+| +++.+ .+++.....
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKG--------------------PELlNkYVG---------- 587 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKG--------------------PELLNKYVG---------- 587 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecC--------------------HHHHHHHhh----------
Confidence 45688999999999999999999 455555 44433 222222111
Q ss_pred hHHHHH-HHHHHHhcCceEEEEEecccCCC----C------cchHHHHHHhhcC--CCCCcEEEEEccCCCCCCCccccc
Q 041007 277 EMETVL-QYINEFVQGKKVLLVLDDLWWNA----Y------PRYWEQLMYSLKS--GSEGSRILVTRSGGKNGTNMTEIG 343 (597)
Q Consensus 277 ~~~~~~-~~l~~~L~~kr~LLVLDdv~~~~----~------~~~~~~l~~~l~~--~~~gs~IIvTtR~~~~~~~~~~~~ 343 (597)
+.+..+ ..+++.-...+++|+||.++..- + .....+++..+.. ...|.-||-.|-.+ ++++-.
T Consensus 588 ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRP----DiIDpA 663 (802)
T KOG0733|consen 588 ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRP----DIIDPA 663 (802)
T ss_pred hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCC----cccchh
Confidence 112222 22333334679999999985321 1 1123444444543 24455566555433 111111
Q ss_pred ccccCccccce--eecCCCChHHHHHHHHHHhc
Q 041007 344 LGEKNGTNMME--IGLGELSEEECRSLFRQIAF 374 (597)
Q Consensus 344 ~~~~~~~~~~~--~~l~~Ls~~es~~Lf~~~~~ 374 (597)
+.. .+... +-++.-+.+|=.++++...-
T Consensus 664 iLR---PGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 664 ILR---PGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred hcC---CCccCceeeecCCCHHHHHHHHHHHhc
Confidence 110 01111 55666777888888887764
No 196
>PRK07261 topology modulation protein; Provisional
Probab=96.86 E-value=0.0025 Score=58.30 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998763
No 197
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.85 E-value=0.0078 Score=58.82 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=34.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhc----cCCeeEEEEecCCCchhh
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKA----NFDKRIWVSASYPRDEIR 243 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~ 243 (597)
...+.=|+|++|+|||.|+.+++-...... .=..++|++-...+...+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~R 88 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPER 88 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHH
Confidence 457999999999999999988764322221 123589999888887633
No 198
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.84 E-value=0.0013 Score=59.83 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
++.|.|.+|+|||++|..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999999876
No 199
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.84 E-value=0.013 Score=54.07 Aligned_cols=124 Identities=16% Similarity=0.094 Sum_probs=65.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC--CCchhhhhhhhhhhcccchHHHHHHHHHHhccCCC--
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY--PRDEIRVARDEISVARDRDEIRVAKAILESLKGSV-- 272 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~-- 272 (597)
..+++|.|+.|.|||||++.++.. . ....+.+++.-.. ..+.. ..... .....++++.++...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~-~~~~~---------i~~~~q~l~~~gl~~~~ 91 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLASLSPK-ELARK---------IAYVPQALELLGLAHLA 91 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCcCCHH-HHHHH---------HhHHHHHHHHcCCHhHh
Confidence 469999999999999999999873 1 2233444432111 00110 00000 111111344433211
Q ss_pred ----CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CC-CcEEEEEccCC
Q 041007 273 ----SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SE-GSRILVTRSGG 333 (597)
Q Consensus 273 ----~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~-gs~IIvTtR~~ 333 (597)
.....-+...-.+...+...+-++++|+--..-+....+.+...+... .. +..||++|.+.
T Consensus 92 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 92 DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 111112222334555666788899999975444355556666655442 22 66788887765
No 200
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.83 E-value=0.0051 Score=57.09 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 199 VIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
++.|.|++|+|||+|+.++... ....=..++|++.....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEESP 39 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCH
Confidence 3689999999999999998774 22222457788776543
No 201
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.82 E-value=0.0038 Score=67.09 Aligned_cols=88 Identities=20% Similarity=0.339 Sum_probs=55.1
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC
Q 041007 194 KPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS 273 (597)
Q Consensus 194 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 273 (597)
++.-++..++|++|.||||||+-+++.. .| .++=|++|..... ..+-..|...+...
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~----------------~~v~~kI~~avq~~-- 379 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTA----------------PMVKEKIENAVQNH-- 379 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccH----------------HHHHHHHHHHHhhc--
Confidence 5677899999999999999999998842 22 2445666665554 33333333322211
Q ss_pred chhhHHHHHHHHHHHh--cCceEEEEEecccCCCCcchHHHHHHhhc
Q 041007 274 SQVEMETVLQYINEFV--QGKKVLLVLDDLWWNAYPRYWEQLMYSLK 318 (597)
Q Consensus 274 ~~~~~~~~~~~l~~~L--~~kr~LLVLDdv~~~~~~~~~~~l~~~l~ 318 (597)
..+ .+++..||+|.++-.. ....+.+...+.
T Consensus 380 -------------s~l~adsrP~CLViDEIDGa~-~~~Vdvilslv~ 412 (877)
T KOG1969|consen 380 -------------SVLDADSRPVCLVIDEIDGAP-RAAVDVILSLVK 412 (877)
T ss_pred -------------cccccCCCcceEEEecccCCc-HHHHHHHHHHHH
Confidence 112 2678899999996544 344555555553
No 202
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.0099 Score=60.82 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=54.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQ 275 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 275 (597)
...+++++|+.|+||||++..+......+.....+..++.... .. +..+.+....+.++.+....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~-R~--------------ga~EqL~~~a~~~gv~~~~~ 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY-RI--------------GGHEQLRIFGKILGVPVHAV 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc-cc--------------cHHHHHHHHHHHcCCceEec
Confidence 3579999999999999999999873222222234555553221 11 01444555555555443222
Q ss_pred hhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhh
Q 041007 276 VEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSL 317 (597)
Q Consensus 276 ~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l 317 (597)
.+...+...+.+ +.++ -++++|..-.......+......+
T Consensus 201 ~~~~~l~~~l~~-l~~~-DlVLIDTaG~~~~d~~l~e~La~L 240 (374)
T PRK14722 201 KDGGDLQLALAE-LRNK-HMVLIDTIGMSQRDRTVSDQIAML 240 (374)
T ss_pred CCcccHHHHHHH-hcCC-CEEEEcCCCCCcccHHHHHHHHHH
Confidence 222223333332 3444 566699885443222333344444
No 203
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.013 Score=63.03 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=46.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
..-+|.++-++++.+.+.-..-. ++.+.++++.+||+|||||++|+.++. .....| +-+++++-.+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr----gs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDv 477 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR----GSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDV 477 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc----ccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccH
Confidence 45679999999999988522110 134678999999999999999999988 444444 22444444443
No 204
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.79 E-value=0.056 Score=55.06 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 172 NAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 172 ~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+.-.+.|.+.+..... ..+.+|+|.|.=|+|||++.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~-------~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS-------DDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCC-------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445667777775431 35789999999999999999999874
No 205
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.79 E-value=0.001 Score=56.97 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+|+|.|++|+||||+|+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 206
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.78 E-value=0.007 Score=57.71 Aligned_cols=223 Identities=13% Similarity=0.128 Sum_probs=116.6
Q ss_pred cccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChh----hhccCCeeEEEEecCCCchhh
Q 041007 168 FHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSD----VKANFDKRIWVSASYPRDEIR 243 (597)
Q Consensus 168 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~----~~~~F~~~~wv~~~~~~~~~~ 243 (597)
..++++....|..... ....+-..++||+|.||-|.+..+.+..- .+-.-+..-|.+-+...-...
T Consensus 15 l~~~~e~~~~Lksl~~----------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEis 84 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS----------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEIS 84 (351)
T ss_pred cccHHHHHHHHHHhcc----------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEE
Confidence 5566666666666554 23578899999999999998877766411 111233445554443310000
Q ss_pred h----hhhhhhhcc-cchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceE-EEEEecccCCCCcchHHHHHHhh
Q 041007 244 V----ARDEISVAR-DRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKV-LLVLDDLWWNAYPRYWEQLMYSL 317 (597)
Q Consensus 244 ~----~~~~~~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LLVLDdv~~~~~~~~~~~l~~~l 317 (597)
. +.-++..+. .....-+.++++.++....+-.. -..+.| ++|+-.++... .+.-..+....
T Consensus 85 tvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT-~dAQ~aLRRTM 151 (351)
T KOG2035|consen 85 TVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELT-RDAQHALRRTM 151 (351)
T ss_pred EecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhh-HHHHHHHHHHH
Confidence 0 000000000 00113444555554433211100 012344 55666664433 44445566666
Q ss_pred cCCCCCcEEEEEccCCCCCCCcccccccccCccccce--eecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 318 KSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME--IGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 318 ~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~--~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
..-.+.+|+|+..-+..+.- ..-+..+ +.+...+++|....++..+-..+-.. + .+++.+|+++
T Consensus 152 EkYs~~~RlIl~cns~SriI----------epIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~k 217 (351)
T KOG2035|consen 152 EKYSSNCRLILVCNSTSRII----------EPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEK 217 (351)
T ss_pred HHHhcCceEEEEecCcccch----------hHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHH
Confidence 55567788877543321000 1111122 89999999999999998875443322 1 6789999999
Q ss_pred cCCchHHHHHHHhhhccC---------C-CHHHHHHHHhhhc
Q 041007 396 CKGLPFAVKILGSLLRFK---------T-SIKEWQSVLDSEI 427 (597)
Q Consensus 396 ~~GlPLai~~~~~~l~~~---------~-~~~~w~~~l~~~~ 427 (597)
++|+---.-.+-..++-+ . ..-+|.-.+.+..
T Consensus 218 S~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 218 SNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred hcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHH
Confidence 998654333332222211 0 1346877776543
No 207
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.77 E-value=0.017 Score=55.94 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=32.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
+...++.|.|++|+|||++|.++... .-..-..++|++.....
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEEHP 61 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeCCH
Confidence 35689999999999999999998663 22334567888876544
No 208
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.76 E-value=0.0082 Score=58.53 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=32.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCe-eEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDK-RIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~ 241 (597)
....++|.|.+|+|||+|++.+++ ..+.+|.. ++++-+.+....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~E 112 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTRE 112 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHH
Confidence 456899999999999999999999 45555644 555555555443
No 209
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.005 Score=56.45 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=63.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhh-hcccc---hHHHHHHHHHHhccCCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEIS-VARDR---DEIRVAKAILESLKGSV 272 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~il~~l~~~~ 272 (597)
..+++|.|+.|.|||||++.++... ....+.+++.-.............+. +.+.. ....+...+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------- 95 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------- 95 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-------
Confidence 4689999999999999999998732 12234444321100000000000000 00000 0001111111
Q ss_pred CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 273 SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 273 ~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
...-+...-.+...+..++-++++|+--..-+......+...+... ..|..||++|.+.
T Consensus 96 --LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 96 --LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred --cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 1111222334566667788899999975544455555565555442 2367788888765
No 210
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.75 E-value=0.0053 Score=56.25 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=60.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch-hhhhhhhhh-hcccchHHHHHHHHHHhccCCCCc
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE-IRVARDEIS-VARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
..+++|.|+.|.|||||.+.++.-. ....+.+++.-...... .......+. +.+..... ...+.+.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~--~~tv~~~l------ 96 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELF--SGSIAENI------ 96 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheEEECCCCccc--cCcHHHHC------
Confidence 4699999999999999999998731 22233333321100000 000000000 00000000 00111111
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
...-+...-.+...+..++-+++||+--..-+......+...+... ..|..||++|.+.
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 1111222233455555677799999975544444555555555432 3467788887765
No 211
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.75 E-value=0.0054 Score=62.37 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|+...+.++.+.+..... ...-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~--------~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP--------LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC--------CCCCEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999988876553 345788999999999999999976
No 212
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.74 E-value=0.0044 Score=58.00 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
-+++.|.|++|+|||+++..+..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 213
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.73 E-value=0.021 Score=51.97 Aligned_cols=116 Identities=15% Similarity=-0.003 Sum_probs=60.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEE-------ecCCCchhhhhhhhhhhcccchHHHHHHHHHHhc
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVS-------ASYPRDEIRVARDEISVARDRDEIRVAKAILESL 268 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l 268 (597)
...+++|.|+.|.|||||++.++.-.. ...+.+++. +.+.... .. ..+...+.-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~-----------~~---~tv~~nl~~~- 87 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYL-----------PL---GTLREQLIYP- 87 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCcc-----------cc---ccHHHHhhcc-
Confidence 346999999999999999999987421 112222221 1111110 00 1222222110
Q ss_pred cCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 269 KGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.......-+...-.+...+-.++-++++|+--..-+......+...+... +..||++|.+.
T Consensus 88 --~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~ 148 (166)
T cd03223 88 --WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRP 148 (166)
T ss_pred --CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCCh
Confidence 11111222223334555556677888999865443344555555555443 35677777665
No 214
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.012 Score=61.21 Aligned_cols=53 Identities=26% Similarity=0.372 Sum_probs=36.4
Q ss_pred ccccch---hhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 167 EFHGRN---AEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 167 ~~vGR~---~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+.-|-| .|++++++.|..... -..-+..-++-|.++|++|.|||-||++++-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~k-ftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTK-FTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHH-hhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 345665 466777788874431 11111234677999999999999999999884
No 215
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.72 E-value=0.028 Score=53.17 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=32.2
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+-...-+....+.+...+.....+..+|++|.+.
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~ 184 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRL 184 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 34555556778899999765544555666666665433467777777665
No 216
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.72 E-value=0.0053 Score=61.51 Aligned_cols=85 Identities=24% Similarity=0.296 Sum_probs=52.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCC--
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSV-- 272 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~-- 272 (597)
+..+++.|+|++|+||||||.+++.. ....-..++|++....++.. .++.++...
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~---------------------~a~~lGvd~~~ 109 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV---------------------YARKLGVDIDN 109 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH---------------------HHHHcCCCHHH
Confidence 35679999999999999999998773 33334557788776554431 122222211
Q ss_pred ---CchhhHHHHHHHHHHHhc-CceEEEEEeccc
Q 041007 273 ---SSQVEMETVLQYINEFVQ-GKKVLLVLDDLW 302 (597)
Q Consensus 273 ---~~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~ 302 (597)
..+.+.++....+....+ +..-++|+|.+-
T Consensus 110 l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 110 LLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred eEEecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 112234445555555443 456799999974
No 217
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.71 E-value=0.014 Score=57.91 Aligned_cols=41 Identities=34% Similarity=0.413 Sum_probs=32.1
Q ss_pred cccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHh
Q 041007 168 FHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVF 218 (597)
Q Consensus 168 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 218 (597)
+-+|..+..--.++|.. +....|.+.|.+|.|||.||....
T Consensus 226 i~prn~eQ~~ALdlLld----------~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLLD----------DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhcC----------CCCCeEEeeccCCccHhHHHHHHH
Confidence 44677777767777773 357899999999999999987654
No 218
>PRK06696 uridine kinase; Validated
Probab=96.71 E-value=0.0027 Score=60.85 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=35.4
Q ss_pred cchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 170 GRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 170 GR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.|.+-+++|.+.+.... .+.+.+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~-------~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN-------LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC-------CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36777888888886533 236789999999999999999999873
No 219
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.71 E-value=0.0087 Score=67.49 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++|+...+.++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~--------~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ--------SDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC--------CCCCEEEECCCCcCHHHHHHHHHHh
Confidence 3589999999998877775443 3457899999999999999999874
No 220
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.71 E-value=0.011 Score=52.38 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=57.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
..+++|.|+.|.|||||++.+.... ....+.+|+.-...... . .+ ..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~~i~~---------~------~~---------------lS 72 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTVKIGY---------F------EQ---------------LS 72 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeEEEEE---------E------cc---------------CC
Confidence 4699999999999999999998742 22334444421100000 0 00 00
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.-+...-.+...+..++-++++|+--..-+......+...+... +..||++|.+.
T Consensus 73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~ 127 (144)
T cd03221 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDR 127 (144)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCH
Confidence 11111223445555677899999975444455556665555443 24677777654
No 221
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.71 E-value=0.0066 Score=61.71 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=36.1
Q ss_pred cccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 168 FHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 168 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
++|+...++++.+.+..... ....|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~--------~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP--------LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC--------CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46888888888888776543 3456899999999999999999763
No 222
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.019 Score=61.68 Aligned_cols=42 Identities=31% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
.....|.|.|+.|+|||+||+++++... +.....+..++++.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~ 470 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCST 470 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechh
Confidence 3567899999999999999999998533 44445566676654
No 223
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.67 E-value=0.021 Score=53.95 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=43.7
Q ss_pred HHHHHHHHHhccCCC------C-chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEE
Q 041007 258 IRVAKAILESLKGSV------S-SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILV 328 (597)
Q Consensus 258 ~~~~~~il~~l~~~~------~-~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIv 328 (597)
......+++.++... + ....-++-.-.+.+.|...+-+|+.|+---.-+...-+.+...+... ..|..||+
T Consensus 119 ~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~ 198 (226)
T COG1136 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM 198 (226)
T ss_pred HHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE
Confidence 445555666655431 1 12222344446777788889999999742111133444555555442 45778888
Q ss_pred EccCC
Q 041007 329 TRSGG 333 (597)
Q Consensus 329 TtR~~ 333 (597)
.|.+.
T Consensus 199 VTHd~ 203 (226)
T COG1136 199 VTHDP 203 (226)
T ss_pred EcCCH
Confidence 88887
No 224
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.67 E-value=0.029 Score=53.11 Aligned_cols=181 Identities=15% Similarity=0.151 Sum_probs=93.9
Q ss_pred CccccchhhHH---HHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNAEKQ---KILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
++.||.++... -|.+.|..... =+.-.++.|..+|++|.|||.+|+.+.+. .+..| +.+..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~----Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vka----- 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPER----FGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVKA----- 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHH----hcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEech-----
Confidence 45789887765 34566653321 01235789999999999999999999994 33222 21110
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCC-----------CCcchHH
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWN-----------AYPRYWE 311 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~-----------~~~~~~~ 311 (597)
.++. -+.+|. ...++.+.....-+..+|+++||.+.-. +..+..+
T Consensus 185 ---------------t~li---GehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVN 240 (368)
T COG1223 185 ---------------TELI---GEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVN 240 (368)
T ss_pred ---------------HHHH---HHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHH
Confidence 1111 111111 1122222223333456899999987421 1112333
Q ss_pred HHHHhhcC--CCCCcEEEEEccCCCCCCCcccccccccCccccce--eecCCCChHHHHHHHHHHhccCCCCCCccchHH
Q 041007 312 QLMYSLKS--GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME--IGLGELSEEECRSLFRQIAFHGRSSDYREKFEP 387 (597)
Q Consensus 312 ~l~~~l~~--~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~--~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~ 387 (597)
.++..+.. .+.|...|-.|... ...+. .+.+... |+..--+++|-.+++...+-.-.-+ +..
T Consensus 241 ALLTelDgi~eneGVvtIaaTN~p-~~LD~--------aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp-----v~~ 306 (368)
T COG1223 241 ALLTELDGIKENEGVVTIAATNRP-ELLDP--------AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP-----VDA 306 (368)
T ss_pred HHHHhccCcccCCceEEEeecCCh-hhcCH--------HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc-----ccc
Confidence 34444433 23454444444433 11110 1111111 7777888888888888877422211 111
Q ss_pred HHHHHHHhcCCch
Q 041007 388 IGRRVVGKCKGLP 400 (597)
Q Consensus 388 ~~~~I~~~~~GlP 400 (597)
-.+.++++++|..
T Consensus 307 ~~~~~~~~t~g~S 319 (368)
T COG1223 307 DLRYLAAKTKGMS 319 (368)
T ss_pred CHHHHHHHhCCCC
Confidence 2466777777653
No 225
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.65 E-value=0.011 Score=59.33 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=33.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhh----ccCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVK----ANFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~~~~~~~~ 241 (597)
...++-|+|++|+|||+|+.+++-..... ..=..++|++....+..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~ 144 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRP 144 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCH
Confidence 56789999999999999999876421221 11236899998887765
No 226
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.65 E-value=0.0098 Score=65.05 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=40.4
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....++|....++++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~--------~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR--------SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC--------cCCCEEEECCCCccHHHHHHHHHHh
Confidence 345789999999999988875543 3456789999999999999999874
No 227
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.022 Score=58.12 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+++|+|+|++|+||||++..++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4589999999999999999999863
No 228
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.64 E-value=0.014 Score=56.05 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=27.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
...++.|.|++|+||||||.+++.. -.+.. ..+++++...
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~ 62 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL 62 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC
Confidence 4569999999999999998777653 22222 3456666433
No 229
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.64 E-value=0.0086 Score=54.26 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=61.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
..+++|.|+.|.|||||.+.++.. .....+.+++.-...... +...... ..++.. .+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~--------------~~~~~~~---~~i~~~-~qLS 84 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFA--------------SPRDARR---AGIAMV-YQLS 84 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcC--------------CHHHHHh---cCeEEE-EecC
Confidence 469999999999999999999873 123344444432110000 0000000 001100 0011
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.-+...-.+...+-.++-++++|+--+.-+......+...+... ..+..||++|.+.
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 11222333555556678899999975544455556666655432 3466788887765
No 230
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.63 E-value=0.0059 Score=61.18 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=34.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
+..+++-|+|++|+||||||.+++.. ....-..++|++....++.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence 35679999999999999999998763 3334456788887665554
No 231
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.015 Score=58.86 Aligned_cols=84 Identities=25% Similarity=0.304 Sum_probs=54.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC--
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS-- 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-- 273 (597)
...+|.|-|.+|||||||..+++. +....- .+++|+-.+. ....+--.+.|+....
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES-------------------~~QiklRA~RL~~~~~~l 149 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES-------------------LQQIKLRADRLGLPTNNL 149 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC-------------------HHHHHHHHHHhCCCccce
Confidence 457999999999999999999988 444333 6777765433 2223333445554322
Q ss_pred ---chhhHHHHHHHHHHHhcCceEEEEEecccCC
Q 041007 274 ---SQVEMETVLQYINEFVQGKKVLLVLDDLWWN 304 (597)
Q Consensus 274 ---~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~ 304 (597)
...+.+.+...+.+ .++-++|+|-++..
T Consensus 150 ~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT~ 180 (456)
T COG1066 150 YLLAETNLEDIIAELEQ---EKPDLVVIDSIQTL 180 (456)
T ss_pred EEehhcCHHHHHHHHHh---cCCCEEEEecccee
Confidence 13455555555554 67899999998643
No 232
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.62 E-value=0.01 Score=55.38 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=26.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
+++|.++|+.|+||||.+..++.. .+.+-..+..++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADT 39 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEEST
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCC
Confidence 368999999999999888777763 333333466666543
No 233
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.031 Score=53.67 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=75.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChh-hhc----------cC---CeeEEEEecC--CCchhhhhhhhhhhcc-------
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSD-VKA----------NF---DKRIWVSASY--PRDEIRVARDEISVAR------- 253 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~----------~F---~~~~wv~~~~--~~~~~~~~~~~~~~~~------- 253 (597)
...++|+||.|.|||||.+.+.--.. .++ .+ ..+.||+=.. +.+......+.+....
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 47999999999999999999976211 000 01 2355554211 2222222222222211
Q ss_pred ---cchHHHHHHHHHHhccCCC------CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCC
Q 041007 254 ---DRDEIRVAKAILESLKGSV------SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEG 323 (597)
Q Consensus 254 ---~~~~~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~g 323 (597)
.....+...+.++.++... .....-+.-.-.|.+.|..++=||+||.--..-+...-..+...+.. ...|
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 0111355566666665421 11122233344577888899999999985433334444445555543 2338
Q ss_pred cEEEEEccCC
Q 041007 324 SRILVTRSGG 333 (597)
Q Consensus 324 s~IIvTtR~~ 333 (597)
..||++|.+-
T Consensus 190 ~tIl~vtHDL 199 (254)
T COG1121 190 KTVLMVTHDL 199 (254)
T ss_pred CEEEEEeCCc
Confidence 8999998876
No 234
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.62 E-value=0.02 Score=52.44 Aligned_cols=120 Identities=15% Similarity=0.062 Sum_probs=59.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCC---
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSV--- 272 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~--- 272 (597)
...+++|.|+.|+|||||.+.+..+ .+ .+.|......+... ..... .+ .+.+..++...
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~---~G---~v~~~~~~~~~~~~----~~~~~------~q--~~~l~~~~L~~~~~ 81 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA---SG---KARLISFLPKFSRN----KLIFI------DQ--LQFLIDVGLGYLTL 81 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc---CC---cEEECCcccccccc----cEEEE------hH--HHHHHHcCCCcccc
Confidence 3569999999999999999988632 00 01111000000000 00000 00 23444444321
Q ss_pred ----CchhhHHHHHHHHHHHhcCc--eEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 273 ----SSQVEMETVLQYINEFVQGK--KVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 273 ----~~~~~~~~~~~~l~~~L~~k--r~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.....-+...-.+...+..+ +-+++||+--..-+....+.+...+... ..|..||++|.+.
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 01111122223344455556 7788899875444344555555555432 2467788887765
No 235
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.58 E-value=0.0076 Score=59.87 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++++|+|++|+||||++..++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998774
No 236
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.013 Score=57.28 Aligned_cols=92 Identities=23% Similarity=0.236 Sum_probs=56.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCC-CC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGS-VS 273 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~-~~ 273 (597)
+..+++=|+|+.|+||||||.+++-. .+..-..++|++..+.++..+. ..+....+..+... ..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~-------------~~l~~~~~d~l~v~~~~ 122 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERA-------------KQLGVDLLDNLLVSQPD 122 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHH-------------HHHHHhhhcceeEecCC
Confidence 46789999999999999999998763 4444447899998888876332 22222212222211 12
Q ss_pred chhhHHHHHHHHHHHhcCceEEEEEecc
Q 041007 274 SQVEMETVLQYINEFVQGKKVLLVLDDL 301 (597)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~kr~LLVLDdv 301 (597)
.......++..+......+--|+|+|.+
T Consensus 123 ~~e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 123 TGEQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred CHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 2233334444444444444679999987
No 237
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.54 E-value=0.049 Score=52.04 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+....-+......+...+.....+..||++|.+.
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 198 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRL 198 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 34555556778999999765544555566666665433456777777665
No 238
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.53 E-value=0.011 Score=64.13 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=40.7
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...++|+...++++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~--------~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA--------SDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC--------CCCcEEEECCCCccHHHHHHHHHHh
Confidence 45689999999999998886653 4567899999999999999999874
No 239
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.024 Score=60.60 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=37.4
Q ss_pred ccccchhhHHHHHHHhhCCCCCC---cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDE---ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANF 227 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F 227 (597)
.+=|-++-+.+|.+.+.-...+- ..=+-..++-|.++||||+|||++|+.+++ ....+|
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 34457766667665554221100 000013567899999999999999999999 455555
No 240
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.027 Score=53.37 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+..++-++++|+--+.-+......+...+... ..+..||++|.+.
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 188 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 3555556677899999975544455555555555432 3467788888765
No 241
>PRK05973 replicative DNA helicase; Provisional
Probab=96.52 E-value=0.013 Score=56.16 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
...++.|.|.+|+|||+++.++... ....-..+++++.....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes~ 104 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYTE 104 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCCH
Confidence 4569999999999999999998764 22223456677766543
No 242
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0069 Score=55.81 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CC-CcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SE-GSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~-gs~IIvTtR~~ 333 (597)
.+...+..++=++++|+--..-+......+...+... .. +..||++|.+.
T Consensus 110 ~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3555566678899999875444455556666555442 22 56777777665
No 243
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.50 E-value=0.0036 Score=59.38 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999874
No 244
>PRK09354 recA recombinase A; Provisional
Probab=96.50 E-value=0.0093 Score=60.28 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=53.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCC--
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSV-- 272 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~-- 272 (597)
+..+++-|+|++|+|||||+.+++.. ....-..++|++....++.. .++.++.+.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~---------------------~a~~lGvdld~ 114 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV---------------------YAKKLGVDIDN 114 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH---------------------HHHHcCCCHHH
Confidence 35679999999999999999998873 33344567899877665541 122222210
Q ss_pred ---CchhhHHHHHHHHHHHhc-CceEEEEEeccc
Q 041007 273 ---SSQVEMETVLQYINEFVQ-GKKVLLVLDDLW 302 (597)
Q Consensus 273 ---~~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~ 302 (597)
..+.+.++....+...++ +..-+||+|.+-
T Consensus 115 lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 115 LLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred eEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 112234444555555544 456799999974
No 245
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.50 E-value=0.0054 Score=57.54 Aligned_cols=108 Identities=9% Similarity=0.151 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhh
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVE 277 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 277 (597)
.+|.|+|+.|+||||++..+... ...+....++.- ..+.... . .. ...++.+-.. ..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E~~--~------------~~-~~~~i~q~~v----g~~ 59 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIEFV--H------------ES-KRSLINQREV----GLD 59 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCcccc--c------------cC-ccceeeeccc----CCC
Confidence 47999999999999999987763 333333344332 2211110 0 00 0001100000 001
Q ss_pred HHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 278 METVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 278 ~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.....+.++..+...+=++++|++.+.. ........ ...|..++.|+...
T Consensus 60 ~~~~~~~i~~aLr~~pd~ii~gEird~e---~~~~~l~~---a~~G~~v~~t~Ha~ 109 (198)
T cd01131 60 TLSFENALKAALRQDPDVILVGEMRDLE---TIRLALTA---AETGHLVMSTLHTN 109 (198)
T ss_pred ccCHHHHHHHHhcCCcCEEEEcCCCCHH---HHHHHHHH---HHcCCEEEEEecCC
Confidence 1234556777777778899999994332 33333322 23455677776544
No 246
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.49 E-value=0.029 Score=53.59 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=32.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+.-..-+......+...+.....+..||++|.+.
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 192 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSM 192 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 35555667888999999755444555566666555433346788888765
No 247
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.48 E-value=0.0022 Score=63.08 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=37.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
+..+++.|+|.+|+|||+++.++.. ........++||+.......
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCHHH
Confidence 4568999999999999999999988 55566888999998876544
No 248
>PHA02244 ATPase-like protein
Probab=96.46 E-value=0.013 Score=59.40 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..|.|+|++|+|||+||+.+++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999988
No 249
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.46 E-value=0.0075 Score=55.29 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46999999999999999999987
No 250
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.44 E-value=0.034 Score=52.44 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+-.++-++++|+--..-+......+...+... ..+..||++|.+.
T Consensus 139 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 189 (204)
T PRK13538 139 ALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189 (204)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh
Confidence 4555566778899999975444355555565555432 3356788887766
No 251
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.44 E-value=0.037 Score=51.99 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=32.4
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
-.+...+..++-+|++|+--..-+...-+.+...+... ..|..||++|.+.
T Consensus 136 v~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 187 (200)
T PRK13540 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 34555566678899999975443344445555555432 3467888888876
No 252
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.43 E-value=0.036 Score=57.58 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...++|.|++|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999999854
No 253
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.43 E-value=0.02 Score=58.07 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=33.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhh---hcc-CCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDV---KAN-FDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~-F~~~~wv~~~~~~~~ 241 (597)
...++-|+|++|+|||+|+.+++-.... .+. -..++|++....|..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~p 174 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRP 174 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCH
Confidence 5678889999999999999998642222 111 246899998887776
No 254
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.42 E-value=0.037 Score=50.09 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCceEEEEEecc-cCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 279 ETVLQYINEFVQGKKVLLVLDDL-WWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 279 ~~~~~~l~~~L~~kr~LLVLDdv-~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
++-.-.|.+.+-+++-+|+-|.- -+.|...+|+-+.-.-.-+..|+.||++|.+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH
Confidence 33344566777788999999963 22243336655544334467899999999887
No 255
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.39 E-value=0.0023 Score=56.83 Aligned_cols=36 Identities=36% Similarity=0.362 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEE
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVS 234 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 234 (597)
..+|.|+|.+|+||||||+.+.+ +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 5555545555554
No 256
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.38 E-value=0.033 Score=59.87 Aligned_cols=61 Identities=16% Similarity=0.326 Sum_probs=43.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
.+++--...++++..||...-. +....+++.++||+|+||||.++.+++. -.|+..-|.+-
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-----~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~np 79 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-----GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWINP 79 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-----cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecCC
Confidence 3445556778899999975432 1234579999999999999999999873 24666678643
No 257
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.38 E-value=0.045 Score=53.60 Aligned_cols=137 Identities=12% Similarity=0.017 Sum_probs=65.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhh-hcc--CC---------eeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHH
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDV-KAN--FD---------KRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAI 264 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~---------~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (597)
..+++|.|+.|+|||||++.+..-... .+. |+ .+.|+.-.............+..............+
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 117 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA 117 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH
Confidence 469999999999999999999763111 110 11 122322111110000111111111001112234455
Q ss_pred HHhccCCCC------chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 265 LESLKGSVS------SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 265 l~~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
++.++.... ....-+.-.-.|...+..++-+|+||+--+.-+......+...+... ..+..||++|.+.
T Consensus 118 l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 118 LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred HHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 555544210 11111222233445555677899999875444344555555555432 2356778887765
No 258
>PRK08233 hypothetical protein; Provisional
Probab=96.38 E-value=0.012 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+|+|.|++|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 259
>PRK13695 putative NTPase; Provisional
Probab=96.36 E-value=0.013 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.|+|+|++|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 260
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.039 Score=52.36 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=31.6
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
-.+...+..++-+|+||+--..-+...-..+...+.....+..||++|.+.
T Consensus 139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~ 189 (211)
T cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIV 189 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 345556667888999998644433445555555554432346788887765
No 261
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.34 E-value=0.041 Score=51.79 Aligned_cols=135 Identities=11% Similarity=0.057 Sum_probs=67.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEE-----------------ecCCCch--hhhhhhhhhhcccch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVS-----------------ASYPRDE--IRVARDEISVARDRD 256 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-----------------~~~~~~~--~~~~~~~~~~~~~~~ 256 (597)
...+++|.|+.|.|||||.+.+..-.. ...+.+++. +.+.... .......+.......
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 101 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH 101 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccc
Confidence 346999999999999999999876311 111112211 0011000 001111111110111
Q ss_pred HHHHHHHHHHhccCCCC------chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEE
Q 041007 257 EIRVAKAILESLKGSVS------SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVT 329 (597)
Q Consensus 257 ~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvT 329 (597)
.......+++.++.... ....-+...-.+...+..++=+|++|+--..-+......+...+.. ...|..||++
T Consensus 102 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~ 181 (201)
T cd03231 102 SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181 (201)
T ss_pred cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 12334455555543210 0111122233355556667779999997544445555666665543 2346678888
Q ss_pred ccCC
Q 041007 330 RSGG 333 (597)
Q Consensus 330 tR~~ 333 (597)
|.+.
T Consensus 182 sH~~ 185 (201)
T cd03231 182 THQD 185 (201)
T ss_pred ecCc
Confidence 8765
No 262
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.34 E-value=0.0054 Score=55.92 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=28.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhh-ccCCeeEEEEecC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVK-ANFDKRIWVSASY 237 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~~~~ 237 (597)
..++.+.||.|+|||.||+.+.. ... +.....+-++++.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 46889999999999999999988 344 3444555555543
No 263
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.32 E-value=0.012 Score=58.89 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=51.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC-
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS- 273 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~- 273 (597)
+..+++-|+|+.|+||||||..+.. .....-..++|+.....++. ..++.++.+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~---------------------~~a~~lGvdl~r 107 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDP---------------------EYAESLGVDLDR 107 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---H---------------------HHHHHTT--GGG
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchh---------------------hHHHhcCccccc
Confidence 4568999999999999999999887 44445566899998766554 22333433221
Q ss_pred ----chhhHHHHHHHHHHHhc-CceEEEEEeccc
Q 041007 274 ----SQVEMETVLQYINEFVQ-GKKVLLVLDDLW 302 (597)
Q Consensus 274 ----~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~ 302 (597)
.+...++....+..+++ +.--++|+|.|-
T Consensus 108 llv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 108 LLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CT
T ss_pred eEEecCCcHHHHHHHHHHHhhcccccEEEEecCc
Confidence 12233445555555555 344588999873
No 264
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.037 Score=53.23 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=33.3
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.-.|...+..++-+|+||+-...-+....+.+...+.....+..||++|.+.
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 198 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRL 198 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 3345556667788999999754444555555555554433467788887765
No 265
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.32 E-value=0.029 Score=56.87 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=34.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhcc----CCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKAN----FDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~ 241 (597)
...++-|+|++|+|||+++.+++-....... =..++|++....++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~ 150 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRP 150 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCH
Confidence 5679999999999999999998754222111 136899998876665
No 266
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.31 E-value=0.021 Score=54.90 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=69.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC--
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS-- 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-- 273 (597)
...+++|+|.+|+|||||++.+.. ....-.+.++..-.+-... ......+...++++.++....
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~-----------~~~~~~~~v~elL~~Vgl~~~~~ 103 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKL-----------SKEERRERVLELLEKVGLPEEFL 103 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhc-----------chhHHHHHHHHHHHHhCCCHHHh
Confidence 356999999999999999999988 2232333333332111000 011114455666666664321
Q ss_pred ----chhhHHH-HHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC--CCCCcEEEEEccCC
Q 041007 274 ----SQVEMET-VLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS--GSEGSRILVTRSGG 333 (597)
Q Consensus 274 ----~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~--~~~gs~IIvTtR~~ 333 (597)
...+-.+ -.-.+.+.|.-++-++|.|..-++-+...-.++...+.. ...|...+..|.+-
T Consensus 104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 1111112 222466777889999999997655544444555555543 23455566666554
No 267
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.022 Score=58.82 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...++.|+|++|+||||++..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999863
No 268
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.30 E-value=0.035 Score=52.47 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=32.4
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--..-+......+...+.. ...|..||++|.+.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 187 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP 187 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345555667889999997544445555666665543 23467788888776
No 269
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.04 Score=53.13 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+++||+--..-+...-..+...+... ..|..||++|.+.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3445555677899999975444344555565555442 2367788888765
No 270
>PRK14974 cell division protein FtsY; Provisional
Probab=96.28 E-value=0.036 Score=56.15 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
++.+|.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998888876
No 271
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.28 E-value=0.056 Score=59.20 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....++|+|+.|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999763
No 272
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.27 E-value=0.028 Score=56.87 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=34.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhc----cCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKA----NFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~ 241 (597)
...++-|+|++|+|||+++.+++....... .-..++|++....+..
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~ 143 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRP 143 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCH
Confidence 467899999999999999999876422211 1126899998877665
No 273
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.037 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+++|.|+.|+|||||++.+..-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999999999999763
No 274
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.27 E-value=0.075 Score=50.46 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=31.2
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--+.-+......+...+... ..|..||++|.+.
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~ 192 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL 192 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3555566778899999975444355555555555432 2466777777665
No 275
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.041 Score=56.82 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=58.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhc--cCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKA--NFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 273 (597)
.+++|.++|+.|+||||.+..++....... +-..+..+++... .. +....+....+.++.+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~-R~--------------aa~eQL~~~a~~lgvpv~ 237 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY-RI--------------GAKKQIQTYGDIMGIPVK 237 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc-cH--------------HHHHHHHHHhhcCCcceE
Confidence 357999999999999999988876322211 1123444554422 11 003335555555655433
Q ss_pred chhhHHHHHHHHHHHhcCceEEEEEecccCCCC-cchHHHHHHhhcC
Q 041007 274 SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY-PRYWEQLMYSLKS 319 (597)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~-~~~~~~l~~~l~~ 319 (597)
.....+.+...+.+. .+.-++++|....... ...+..+...+..
T Consensus 238 ~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 238 AIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred eeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 333444454444443 3456888998855431 1133445444443
No 276
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.044 Score=53.19 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=32.0
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+.-+.-+......+...+... ..|..||++|.+.
T Consensus 151 ~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3555555677899999975554455666666655432 2366777777765
No 277
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.26 E-value=0.06 Score=51.57 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 278
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.25 E-value=0.045 Score=52.24 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=31.2
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--+.-+......+...+.....+..||++|.+.
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 199 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRP 199 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 34445556678999999754443555566666665433346788888765
No 279
>PRK07667 uridine kinase; Provisional
Probab=96.25 E-value=0.0086 Score=55.94 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 175 KQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+.|.+.+.... +...+|+|.|.+|+||||+|..+..
T Consensus 3 ~~~~~~~~~~~~--------~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK--------ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC--------CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455666665433 3458999999999999999999987
No 280
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.05 Score=51.97 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=66.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhh-hcc--C---------CeeEEEEecCCCchh--hhhhhhhhhc----c--cch
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDV-KAN--F---------DKRIWVSASYPRDEI--RVARDEISVA----R--DRD 256 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F---------~~~~wv~~~~~~~~~--~~~~~~~~~~----~--~~~ 256 (597)
..+++|.|+.|+|||||++.++.-... .+. | ..+.++. +..... ......+... . ...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~--q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 107 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF--QQDALLPWLTVLDNVALGLELQGVPKAE 107 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe--cccccccCCCHHHHHHHHHHHcCCCHHH
Confidence 468999999999999999999764211 110 1 1122222 111110 0111111100 0 011
Q ss_pred HHHHHHHHHHhccCCC------CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEE
Q 041007 257 EIRVAKAILESLKGSV------SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILV 328 (597)
Q Consensus 257 ~~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIv 328 (597)
.......+++.++... .....-+...-.+...+..++-+++||+--..-+...-..+...+... ..+..||+
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii 187 (220)
T cd03293 108 ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL 187 (220)
T ss_pred HHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1233445555554321 111112222334555566678899999975444344555555555432 23567777
Q ss_pred EccCC
Q 041007 329 TRSGG 333 (597)
Q Consensus 329 TtR~~ 333 (597)
+|.+.
T Consensus 188 ~sH~~ 192 (220)
T cd03293 188 VTHDI 192 (220)
T ss_pred EecCH
Confidence 77665
No 281
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.25 E-value=0.056 Score=51.40 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=66.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhh-hcc--CC-----------eeEEEEecCCCchhhhhhhhhhh---cccchHHH
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDV-KAN--FD-----------KRIWVSASYPRDEIRVARDEISV---ARDRDEIR 259 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-----------~~~wv~~~~~~~~~~~~~~~~~~---~~~~~~~~ 259 (597)
..+++|.|+.|.|||||++.++..... .+. |+ .+.++.-.............+.. ........
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 116 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ 116 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHH
Confidence 468999999999999999999864211 110 11 12233211100000011111100 00111123
Q ss_pred HHHHHHHhccCCCC------chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccC
Q 041007 260 VAKAILESLKGSVS------SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSG 332 (597)
Q Consensus 260 ~~~~il~~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~ 332 (597)
....++..++.... ....-+...-.+...+-.++-+++||+--+.-+......+...+.. ...|..||++|.+
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 117 MPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred HHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 33455555543210 1111122333344555566779999987544434455555555542 2345678888876
Q ss_pred C
Q 041007 333 G 333 (597)
Q Consensus 333 ~ 333 (597)
.
T Consensus 197 ~ 197 (214)
T PRK13543 197 A 197 (214)
T ss_pred h
Confidence 6
No 282
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.24 E-value=0.044 Score=52.24 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=31.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-C-CCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-S-EGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~-~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--..-+......+...+... . .|..||++|.+.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3555666778899999975444355555565555442 2 366788887765
No 283
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.06 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|++|+|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346999999999999999999864
No 284
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.24 E-value=0.086 Score=53.08 Aligned_cols=49 Identities=29% Similarity=0.280 Sum_probs=33.6
Q ss_pred eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHH
Q 041007 354 EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAV 403 (597)
Q Consensus 354 ~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai 403 (597)
.+++.+++.+|+..++.-..-.+-... ....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 489999999999999988764332211 1223445667777789999644
No 285
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.24 E-value=0.015 Score=54.21 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=29.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccC--------CeeEEEEecCCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANF--------DKRIWVSASYPR 239 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~~~~~~ 239 (597)
..++.|.|++|+|||+++.++....-....| ..++|++.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 4589999999999999999987643222222 358888877664
No 286
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.053 Score=52.37 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=35.1
Q ss_pred ccccchhhHHHHHHHhhCCCC--CCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 167 EFHGRNAEKQKILQLLKGESS--DEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~--~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+-|-+...+.|.+.+.-.-. +-=.+.....+-|.++|++|.||+-||++|+..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 345677777776665432110 000111335678999999999999999999984
No 287
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.22 E-value=0.054 Score=52.10 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=31.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
...++.|.|++|+|||+|+.++... ....-..++|++.....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~~ 60 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEESR 60 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCCH
Confidence 4679999999999999999987653 22233467888875443
No 288
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.22 E-value=0.025 Score=57.04 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=32.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhh---hc-cCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDV---KA-NFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~-~F~~~~wv~~~~~~~~ 241 (597)
...++.|+|++|+|||+|+..++..... .+ .-..++|++....+..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~ 144 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRP 144 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCH
Confidence 5679999999999999999988752111 11 1135789988776555
No 289
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.099 Score=53.31 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=52.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQ 275 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 275 (597)
+.++++|+|+.|+||||++..++.. ....-..+.++++...... ....++...+.++.+....
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~g---------------AveQLk~yae~lgvpv~~~ 267 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSG---------------AVEQFQGYADKLDVELIVA 267 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCcc---------------HHHHHHHHhhcCCCCEEec
Confidence 4689999999999999999998863 2222234556665432211 0334444555555432222
Q ss_pred hhHHHHHHHHHHHhc-CceEEEEEecccCC
Q 041007 276 VEMETVLQYINEFVQ-GKKVLLVLDDLWWN 304 (597)
Q Consensus 276 ~~~~~~~~~l~~~L~-~kr~LLVLDdv~~~ 304 (597)
.+...+...+...-. +..=+|++|-....
T Consensus 268 ~dp~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 268 TSPAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 344445554443321 34467888987553
No 290
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.21 E-value=0.031 Score=51.62 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=32.3
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+|+||+--..-+......+...+... ..+..||++|.+.
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3555666778899999975444455555665555432 3467788888765
No 291
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.036 Score=52.62 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 140 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 3555566778899999975444344555555555442 2366788887765
No 292
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.21 E-value=0.057 Score=52.90 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~ 189 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3455556678899999975443344555555555432 2367788888765
No 293
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0046 Score=68.29 Aligned_cols=44 Identities=27% Similarity=0.505 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+||++|++++++.|..... +.+ .++|.+|||||+++.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K--------NNP--vLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK--------NNP--VLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC--------CCC--eEecCCCCCHHHHHHHHHH
Confidence 4589999999999999986543 222 4689999999999887776
No 294
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.18 E-value=0.033 Score=62.08 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=32.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDE--ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+.|-+...+++.+.+....... ..-...-.+-|.|+|++|+|||++|+.++.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 346677766666655443211100 000001234599999999999999999987
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.027 Score=59.78 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|++|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 296
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.17 E-value=0.083 Score=49.15 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=31.1
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+-..+-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 137 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 137 AIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 3555566677899999975444344555555555432 3467788887654
No 297
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.17 E-value=0.075 Score=50.37 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=31.3
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--+.-+......+...+... ..|..||++|.+.
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3455555677899999975544455555555555432 2367788888765
No 298
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.17 E-value=0.06 Score=54.17 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=32.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+|+||+--+.-+......+...+.....+..||+||...
T Consensus 143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l 192 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIM 192 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCH
Confidence 35556667888999999754443445555555554433467889998766
No 299
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.0051 Score=53.91 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|.|+|++|+|||||++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 356899999999999999999874
No 300
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.15 E-value=0.022 Score=53.26 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+|+|.|++|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999987
No 301
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.14 E-value=0.057 Score=51.41 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=31.4
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--+.-+......+...+... ..|..||++|.+.
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4555666778899999975444344555555555432 2366788887765
No 302
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.079 Score=51.71 Aligned_cols=50 Identities=12% Similarity=-0.009 Sum_probs=31.6
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+--+.-+......+...+.....+..||++|.+.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP 205 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34455556788999999755444555555555554433356788887765
No 303
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.11 E-value=0.021 Score=52.38 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+|+|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999883
No 304
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.11 E-value=0.052 Score=48.29 Aligned_cols=22 Identities=41% Similarity=0.824 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+|.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 305
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.10 E-value=0.0058 Score=65.03 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=39.2
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+++|.++.+++|++.|......- ....+++.++||+|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl----~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGL----EEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhc----CCCCceEEEecCCCCCchHHHHHHHH
Confidence 58899999999999994322100 22457999999999999999999987
No 306
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.071 Score=51.92 Aligned_cols=53 Identities=19% Similarity=0.019 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 281 VLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 281 ~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
..-.+...+..++-+++||+.-..-+...-..+...+.....+..||++|.+.
T Consensus 149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 201 (246)
T PRK14269 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNM 201 (246)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 33445666667788999999754433444455555554433366778777765
No 307
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.056 Score=52.40 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999764
No 308
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.10 E-value=0.011 Score=55.67 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998865
No 309
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.10 E-value=0.072 Score=49.38 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=70.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc--hhhhhhhh-------hhh---------------
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD--EIRVARDE-------ISV--------------- 251 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~~-------~~~--------------- 251 (597)
...+++|.|++|+|||||.+.+.. ....-.+.+|+.-..... ....++.. +..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 346999999999999999999866 223334556664311110 00000000 000
Q ss_pred ----cccchHHHHHHHHHHhccCCCC------chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-C
Q 041007 252 ----ARDRDEIRVAKAILESLKGSVS------SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-G 320 (597)
Q Consensus 252 ----~~~~~~~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~ 320 (597)
.....-.+....+++.++.... ....-++-.-.|.+.|.=++-++.+|..-+.-+++....+...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 0111223344444555444221 1112233344577778888889999998666556665555555543 3
Q ss_pred CCCcEEEEEccC
Q 041007 321 SEGSRILVTRSG 332 (597)
Q Consensus 321 ~~gs~IIvTtR~ 332 (597)
..|-..|+.|..
T Consensus 184 ~eGmTMivVTHE 195 (240)
T COG1126 184 EEGMTMIIVTHE 195 (240)
T ss_pred HcCCeEEEEech
Confidence 455555555443
No 310
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.09 E-value=0.024 Score=58.39 Aligned_cols=40 Identities=35% Similarity=0.375 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
...++.|.|.+|+|||||+.+++.. ....-..++|++...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 4569999999999999999999873 333334577777543
No 311
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.09 E-value=0.028 Score=61.05 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|....+.++.+.+..... ....|.|+|..|+||+.+|+.+++
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~--------~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM--------LDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC--------CCCCEEEECCCCccHHHHHHHHHH
Confidence 4689999988888887764432 234588999999999999999865
No 312
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.08 E-value=0.056 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 313
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.056 Score=52.14 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=33.4
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
-.+...+..++=+++||+.-..-+......+...+... ..|..||++|.+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34555566778899999976555455666666666542 2367788887765
No 314
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.08 E-value=0.082 Score=51.11 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=32.1
Q ss_pred HHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 285 INEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 285 l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
+...+-.++-+|+||+-...-+......+...+.....|..||++|.+.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 197 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRL 197 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 4445556778999999755544555666666555433467788888766
No 315
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.07 E-value=0.068 Score=52.88 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=30.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP 238 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 238 (597)
...++.|.|++|+|||+++.+++... ...+-..++|+++...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEEP 70 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEcccC
Confidence 35689999999999999999987742 1222345788887654
No 316
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.07 E-value=0.031 Score=62.36 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=33.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~ 333 (597)
.|.+.+-.++-+|+||..-+.-+...-..+...+.. ....+.|+||-|..
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ 669 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccch
Confidence 466667788999999997554434455556666654 34466777777765
No 317
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.06 E-value=0.077 Score=50.40 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++-++++|+.-..-+......+...+... ..+..||++|.+.
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3445555678899999975544455556666655542 2367788887765
No 318
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.05 E-value=0.053 Score=55.30 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=57.1
Q ss_pred CccEEEEEcCCCCcHH-HHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 196 TLPVIWILGNEGIGKT-ALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKT-tLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
+.++|+++||.||||| |||+..++-. ....=..+..++...-. . +-...++...+-++.+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYR-I--------------GA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYR-I--------------GAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccch-h--------------hHHHHHHHHHHHhCCceEE
Confidence 3789999999999999 5666665521 12222345556543211 1 1145555566666666544
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCC-CcchHHHHHHhhcCC
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNA-YPRYWEQLMYSLKSG 320 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~-~~~~~~~l~~~l~~~ 320 (597)
..+..++...+... ++. =+|.+|-+.... +......+...+...
T Consensus 266 v~~~~el~~ai~~l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 266 VYSPKELAEAIEAL-RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred ecCHHHHHHHHHHh-hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 44444444444332 333 466678775433 123444555555443
No 319
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.05 E-value=0.068 Score=52.20 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=65.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhh-hcc--CC---eeEEEEecCCCch-h-hhhhhhhhhcccchHHHHHHHHHHh
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDV-KAN--FD---KRIWVSASYPRDE-I-RVARDEISVARDRDEIRVAKAILES 267 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~---~~~wv~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~il~~ 267 (597)
...+++|.|+.|.|||||++.++.-... .+. ++ .+.++.-...... . .............. ......+++.
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~ 107 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTK-KEDILPALKR 107 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccccc-HHHHHHHHHH
Confidence 3468999999999999999999864211 111 11 1222221111100 0 00111100000001 1223445555
Q ss_pred ccCCC------CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 268 LKGSV------SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 268 l~~~~------~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
++... .....-+...-.+...+..++-+|+||+--+.-+......+...+... ..|..||++|.+.
T Consensus 108 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 108 VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181 (251)
T ss_pred cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 44321 011111222333555566678899999975544344555555555432 2266777777765
No 320
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.05 E-value=0.046 Score=51.68 Aligned_cols=50 Identities=22% Similarity=0.122 Sum_probs=32.0
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+--..-+......+...+... ..+..||++|.+.
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 186 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL 186 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3455556677899999975544455555565555432 2467788888765
No 321
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.094 Score=49.68 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=32.3
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+--..-+......+...+... ..+..||++|.+.
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 4555556678899999975544455666666666542 2367788877665
No 322
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.061 Score=51.98 Aligned_cols=50 Identities=12% Similarity=-0.045 Sum_probs=31.8
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-C-CCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-S-EGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~-~gs~IIvTtR~~ 333 (597)
.|...+..++-+|+||+--..-+......+...+... . .|..||++|.+.
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL 197 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 4555566678899999975544455555565555442 2 366788887665
No 323
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.04 E-value=0.053 Score=49.59 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998873
No 324
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.04 E-value=0.059 Score=52.10 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+--..-+......+...+... ..|..||++|.+.
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV 193 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 4555666778899999975544455556666655542 2466788887766
No 325
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.04 E-value=0.067 Score=50.47 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=33.3
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
-.+...+..++-+|+||+--..-+....+.+...+... ..|..||++|.+.
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34556666788899999975544455556666555432 2367788887765
No 326
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.055 Score=52.27 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=33.8
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
-.+...|..++-+|+||+-...-+......+...+.....|..||++|.+.
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~ 196 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRL 196 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCH
Confidence 345566667888999999765444555566666665433367788888765
No 327
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.03 E-value=0.091 Score=49.56 Aligned_cols=137 Identities=17% Similarity=0.113 Sum_probs=66.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhh-hcc--CC-----------eeEEEEecCCCch-hhhhhhhhhhcc--cchHHH
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDV-KAN--FD-----------KRIWVSASYPRDE-IRVARDEISVAR--DRDEIR 259 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-----------~~~wv~~~~~~~~-~~~~~~~~~~~~--~~~~~~ 259 (597)
..+++|.|+.|+|||||.+.++.-..- .+. ++ .+.++.-...... .......+.... ......
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~ 105 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNE 105 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHH
Confidence 469999999999999999999763110 110 10 1122221110000 011111111100 001112
Q ss_pred HHHHHHHhccCCCC------chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccC
Q 041007 260 VAKAILESLKGSVS------SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSG 332 (597)
Q Consensus 260 ~~~~il~~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~ 332 (597)
...++++.++.... ....-+.-.-.+...+..++-+|+||+--..-+......+...+... ..|..||++|.+
T Consensus 106 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 185 (205)
T cd03226 106 QAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD 185 (205)
T ss_pred HHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34555665544211 11111222233455556678899999975444455555555555432 346678888776
Q ss_pred C
Q 041007 333 G 333 (597)
Q Consensus 333 ~ 333 (597)
.
T Consensus 186 ~ 186 (205)
T cd03226 186 Y 186 (205)
T ss_pred H
Confidence 5
No 328
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.02 E-value=0.065 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999763
No 329
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.02 E-value=0.019 Score=56.40 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+.|.|+|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999999873
No 330
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.02 E-value=0.043 Score=55.75 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=33.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhh---hc-cCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDV---KA-NFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~-~F~~~~wv~~~~~~~~ 241 (597)
...++-|+|++|+|||+|+..++-.... .+ .-..++|++....+..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~ 171 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRP 171 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccH
Confidence 4678999999999999999988743111 11 1136899998887765
No 331
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.01 E-value=0.069 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++.-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999763
No 332
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.01 E-value=0.07 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 333
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.01 E-value=0.054 Score=51.87 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=32.4
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+-..+-+++||+--+.-+....+.+...+... ..|..||++|.+.
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~ 184 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL 184 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3455556678899999975544455555665555432 3466788888776
No 334
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.00 E-value=0.0069 Score=63.55 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||++.++.+...+... ..|.|.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag------------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG------------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccC------------CCEEEECCCChhHHHHHHHHHHH
Confidence 34899999999998888733 46899999999999999999873
No 335
>PRK04328 hypothetical protein; Provisional
Probab=96.00 E-value=0.038 Score=53.91 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=32.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD 240 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 240 (597)
...++.|.|++|+|||+|+.++... ....-..++|++......
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~~~ 64 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEHPV 64 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCCHH
Confidence 5679999999999999999998763 222345678888766443
No 336
>PTZ00035 Rad51 protein; Provisional
Probab=95.99 E-value=0.057 Score=54.97 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=32.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhh---hc-cCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDV---KA-NFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~-~F~~~~wv~~~~~~~~ 241 (597)
...++.|+|++|+|||+|+..++-.... .+ .-..++|++....+..
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~ 166 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRP 166 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCH
Confidence 5679999999999999999988743221 11 1234678887766554
No 337
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.99 E-value=0.027 Score=53.71 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+|+|.|++|+||||||+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 338
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.99 E-value=0.005 Score=53.03 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 041007 200 IWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 200 v~I~G~gGiGKTtLA~~v~~~ 220 (597)
|.|.|++|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 339
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.49 Score=44.71 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=42.1
Q ss_pred ccc-chhhHHHHHHHhhCCCCCC---cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 168 FHG-RNAEKQKILQLLKGESSDE---ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 168 ~vG-R~~e~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
.+| -+..+++|.+.+.-...+- +.-+-.+++-|.++|++|.|||-||+.|+++ ..+-|+.+|.
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsg 214 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSG 214 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEech
Confidence 454 5788888877765332210 1111346778999999999999999999984 2344566664
No 340
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.14 Score=55.97 Aligned_cols=55 Identities=27% Similarity=0.290 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCc-CCCC-CCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEE-SGSK-PTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~-~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+++=|-++-+.+|.+-+.-.-.+-+ -+++ ....=|.++|++|.|||-||++|+..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE 728 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE 728 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh
Confidence 3455788888888887754211000 0001 12456889999999999999999983
No 341
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.98 E-value=0.084 Score=49.37 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|.|||||++.++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999874
No 342
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.98 E-value=0.056 Score=52.40 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+..|+|++|+|||+|+..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999875
No 343
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.98 E-value=0.04 Score=51.50 Aligned_cols=50 Identities=20% Similarity=0.071 Sum_probs=32.3
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+..++-++++|+.-+.-+......+...+... ..+..||++|.+.
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 4555566677899999975544455556666555432 3477788888765
No 344
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.076 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999763
No 345
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.12 Score=56.01 Aligned_cols=136 Identities=16% Similarity=0.162 Sum_probs=72.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQ 275 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 275 (597)
..+.+.++|++|.|||.||+.+++ ....+| +.+... +.... .+ .
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~-~l~sk----------------------~v------G 318 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS-ELLSK----------------------WV------G 318 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH-HHhcc----------------------cc------c
Confidence 456899999999999999999999 344444 332222 11000 00 0
Q ss_pred hhHHHHHHHHHHHhcCceEEEEEecccCC-----CC-c----chHHHHHHhhcCC--CCCcEEEEEccCCCCCCCccccc
Q 041007 276 VEMETVLQYINEFVQGKKVLLVLDDLWWN-----AY-P----RYWEQLMYSLKSG--SEGSRILVTRSGGKNGTNMTEIG 343 (597)
Q Consensus 276 ~~~~~~~~~l~~~L~~kr~LLVLDdv~~~-----~~-~----~~~~~l~~~l~~~--~~gs~IIvTtR~~~~~~~~~~~~ 343 (597)
.....+...+....+..+++|++|++... +. . ....++...+... ..+..||-||-.. ...+..
T Consensus 319 esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p-~~ld~a--- 394 (494)
T COG0464 319 ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRP-DDLDPA--- 394 (494)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCc-cccCHh---
Confidence 11122333344444578999999998432 10 1 2333444444332 2333334444333 111100
Q ss_pred ccccCccccce--eecCCCChHHHHHHHHHHhc
Q 041007 344 LGEKNGTNMME--IGLGELSEEECRSLFRQIAF 374 (597)
Q Consensus 344 ~~~~~~~~~~~--~~l~~Ls~~es~~Lf~~~~~ 374 (597)
+ ....... +.+.+-+.++..+.|..+..
T Consensus 395 ~---lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 395 L---LRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred h---cccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 0 0000111 88888899999999999874
No 346
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.97 E-value=0.071 Score=52.13 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=31.3
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+|+||+.-..-+......+...+... ..|..||++|.+.
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 4555556677899999975444344555555555432 2367788887765
No 347
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.25 Score=54.60 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=98.3
Q ss_pred Cccccchh---hHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNA---EKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~---e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
.++.|-++ |+.++++.|..+.. -..-+-.-++=+.|+||+|+|||-||++++-.. . +-|++++..--+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~-Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--g-----VPF~svSGSEFv- 381 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQ-YQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--G-----VPFFSVSGSEFV- 381 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHH-HHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--C-----CceeeechHHHH-
Confidence 35667765 44555666654321 000011346678999999999999999999842 2 334555532111
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC--------------cc
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY--------------PR 308 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~--------------~~ 308 (597)
+.+.+.. ...+.+.+...=...++++.+|++..... ..
T Consensus 382 -----------------------E~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~ 433 (774)
T KOG0731|consen 382 -----------------------EMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQ 433 (774)
T ss_pred -----------------------HHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHH
Confidence 1111110 01112222222235688999988743210 11
Q ss_pred hHHHHHHhhcCCCC-CcEEEEEccCCCCCCCcccccccccCccc-cceeecCCCChHHHHHHHHHHhccCCCCCCccchH
Q 041007 309 YWEQLMYSLKSGSE-GSRILVTRSGGKNGTNMTEIGLGEKNGTN-MMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFE 386 (597)
Q Consensus 309 ~~~~l~~~l~~~~~-gs~IIvTtR~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~ 386 (597)
.++++...+..... +..|++.+.+++...+..-. ...+ ...+.+..-+...-.++|.-++..-.. ..+..
T Consensus 434 tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all-----rpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~ 505 (774)
T KOG0731|consen 434 TLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL-----RPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDV 505 (774)
T ss_pred HHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc-----CCCccccceeccCCchhhhHHHHHHHhhccCC---Ccchh
Confidence 33444444443332 33455555444322211100 0001 111777777778888888888743222 13344
Q ss_pred HHHHHHHHhcCCchHHH
Q 041007 387 PIGRRVVGKCKGLPFAV 403 (597)
Q Consensus 387 ~~~~~I~~~~~GlPLai 403 (597)
++.+ |+..+-|.+=|.
T Consensus 506 dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 506 DLSK-LASLTPGFSGAD 521 (774)
T ss_pred hHHH-HHhcCCCCcHHH
Confidence 5555 888888887554
No 348
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.97 E-value=0.11 Score=47.14 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCc-eEEEEEecccCCC--CcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 281 VLQYINEFVQGK-KVLLVLDDLWWNA--YPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 281 ~~~~l~~~L~~k-r~LLVLDdv~~~~--~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.....++.+... -=|||||.+-..- ..-..+.+...+...+.+..||+|.|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 344445555444 4599999973211 0124556777777778889999999987
No 349
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.97 E-value=0.092 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+.+|.++|++|+||||++..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999999874
No 350
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.069 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999763
No 351
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.96 E-value=0.072 Score=51.11 Aligned_cols=50 Identities=10% Similarity=-0.034 Sum_probs=32.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.|...+..++-+++||+--..-+......+...+... ..|..||++|.+.
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~ 198 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK 198 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh
Confidence 4555666778899999975444355556666665542 2367788888765
No 352
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.95 E-value=0.084 Score=50.14 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+++||+--..-+......+...+... ..|..||++|.+.
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3455555677899999975444344555555555432 3466777777665
No 353
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.11 Score=50.22 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=32.2
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3555566678899999975444455555566555542 2467788887765
No 354
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.017 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+.|.++|.+|+||||+|+++.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 57889999999999999999883
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.028 Score=50.48 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=59.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
..+++|.|+.|.|||||++.+... . ......+++.-........ .. ....++-... ..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~--------------~~----~~~~i~~~~q-lS 82 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPL--------------EE----LRRRIGYVPQ-LS 82 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCH--------------HH----HHhceEEEee-CC
Confidence 369999999999999999999873 2 2234444443211110000 00 0011110000 11
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.-+...-.+...+...+-++++|+.-..-+......+...+... ..+..+|++|.+.
T Consensus 83 ~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 83 GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 11222223445555667899999985544444555555555432 2256778877655
No 356
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.93 E-value=0.085 Score=53.10 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+|+||+--+.-+...-..+...+.. ...|..||++|.+.
T Consensus 134 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~ 184 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 455566678889999996544334444444444433 23477899998876
No 357
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.92 E-value=0.076 Score=50.41 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=31.3
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+..++=+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 145 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3455556677899999975444455555565555432 2466788887665
No 358
>PTZ00301 uridine kinase; Provisional
Probab=95.92 E-value=0.0092 Score=56.31 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|.|++|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999998876
No 359
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.91 E-value=0.094 Score=51.39 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=32.8
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
-.+...+..++-+++||+.-..-+......+...+... ..|..||++|.+.
T Consensus 146 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (256)
T TIGR03873 146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL 197 (256)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34555666778899999975544455555665555432 2366788888765
No 360
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.91 E-value=0.082 Score=49.55 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=31.1
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+|++|+.-+.-+......+...+.. ...|..||++|.+.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 137 ALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 355556677889999997544434455555555543 23456777777765
No 361
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.90 E-value=0.09 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||.+.++..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999763
No 362
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.90 E-value=0.078 Score=50.68 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=31.1
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+|++|+--..-+......+...+... ..+..||++|.+.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3445555677899999975443344555555555432 2467888888765
No 363
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.90 E-value=0.1 Score=50.42 Aligned_cols=50 Identities=20% Similarity=0.077 Sum_probs=33.1
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+.-..-+......+...+... ..+..||++|.+.
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 4555666778899999975554455556666665542 2366788888766
No 364
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.89 E-value=0.012 Score=56.46 Aligned_cols=44 Identities=36% Similarity=0.437 Sum_probs=30.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
+...++.|.|++|+|||+|+.++... ..+..=..++|++...+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS-H
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCCH
Confidence 45689999999999999999998763 122213457788876554
No 365
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.88 E-value=0.08 Score=51.50 Aligned_cols=138 Identities=15% Similarity=0.043 Sum_probs=66.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhh-hc--cCCe--eEEEEecCCCchhhhhhhhhhhc-c-cchHHHHHHHHHHhc
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDV-KA--NFDK--RIWVSASYPRDEIRVARDEISVA-R-DRDEIRVAKAILESL 268 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~~--~~wv~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~il~~l 268 (597)
...+++|.|+.|+|||||++.+.....- .+ .++. +.++.-.............+... . ..........+++.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 3469999999999999999999874211 11 1111 22221110000000111111100 0 000012234455554
Q ss_pred cCCC------CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 269 KGSV------SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 269 ~~~~------~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
+... .....-+...-.|...|..++-+++||+--..-+......+...+... ..+..||++|.+.
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~ 176 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI 176 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4321 111111222334556667788899999975443344445555555432 2366788887765
No 366
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.87 E-value=0.1 Score=50.61 Aligned_cols=51 Identities=20% Similarity=0.063 Sum_probs=32.1
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
-.+...+-.++-+|+||+.-+.-+......+...+.....+..||++|.+.
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 202 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDM 202 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 345555666778999999755444555555655554433356788887765
No 367
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.016 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+.+|+|.|.+|+||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 568999999999999999999988
No 368
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.86 E-value=0.084 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999763
No 369
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.85 E-value=0.061 Score=50.41 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998865
No 370
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.84 E-value=0.12 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++-.
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999763
No 371
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.079 Score=59.68 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=69.9
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCC-CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSK-PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.++|.++.+..|.+.+......- .+ .....+.+.|+.|+|||-||+++.. .+-+..+..+-++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl---~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse-------- 629 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGL---KDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE-------- 629 (898)
T ss_pred hccchHHHHHHHHHHHHhhhccc---CCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh--------
Confidence 45677777777777776444211 11 2466788999999999999999877 3333333344444332
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceE-EEEEecccCCCCcchHHHHHHhhcC
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKV-LLVLDDLWWNAYPRYWEQLMYSLKS 319 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LLVLDdv~~~~~~~~~~~l~~~l~~ 319 (597)
... +.+.++.+. .-.. .+....|.+.++.++| +|+||||...+ ......+...+..
T Consensus 630 --------------~~e-vskligsp~-gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh-~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 630 --------------FQE-VSKLIGSPP-GYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAH-PDVLNILLQLLDR 686 (898)
T ss_pred --------------hhh-hhhccCCCc-cccc-chhHHHHHHHHhcCCceEEEEechhhcC-HHHHHHHHHHHhc
Confidence 111 222223322 1110 1123356666777775 66699997766 5555655566543
No 372
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.83 E-value=0.007 Score=53.36 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 373
>PRK05439 pantothenate kinase; Provisional
Probab=95.83 E-value=0.048 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+.+-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 374
>PRK10867 signal recognition particle protein; Provisional
Probab=95.83 E-value=0.063 Score=56.28 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+.+|.++|++|+||||.+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998888776
No 375
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.12 Score=51.13 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.|...+-.++-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~ 221 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL 221 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3555666778899999975444344555555555432 2367788887765
No 376
>PRK10908 cell division protein FtsE; Provisional
Probab=95.82 E-value=0.12 Score=49.45 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|.|+.|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999763
No 377
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.82 E-value=0.1 Score=50.45 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=32.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+....-+......+...+.....|..||++|.+.
T Consensus 149 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~ 198 (238)
T cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRL 198 (238)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 35555566777999999765544555566666664433567788888765
No 378
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.81 E-value=0.11 Score=50.71 Aligned_cols=50 Identities=8% Similarity=0.119 Sum_probs=30.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.|...+..++-+|+||+--+.-+......+...+... ..|..||++|.+.
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3455556677899999975444344555555554432 2366777777765
No 379
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.81 E-value=0.22 Score=46.89 Aligned_cols=53 Identities=8% Similarity=-0.040 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHh-hcC-CCCCcEEEEEccCC
Q 041007 281 VLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYS-LKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 281 ~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~-l~~-~~~gs~IIvTtR~~ 333 (597)
..-.+...+..++-++++|+--..-+....+.+... +.. ...|..||++|.+.
T Consensus 134 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~ 188 (204)
T cd03250 134 QRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 334466667778899999996544334455555543 332 23467777777665
No 380
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.80 E-value=0.11 Score=51.08 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.-.|...+-.++-+++||+--..-+......+...+... ..|..||++|.+.
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 334555666677899999875444455555565555432 2467778777765
No 381
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.80 E-value=0.047 Score=51.28 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+-.++-++++|+--+.-+......+...+... ..+..||++|.+.
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 4555566778899999975444344555555555432 2366788887765
No 382
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.80 E-value=0.053 Score=53.47 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=27.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEec
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSAS 236 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 236 (597)
..+++.++|++|+||||++..++.. ....-..+.++++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC
Confidence 4689999999999999999888763 33332345555543
No 383
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.059 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999986
No 384
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.78 E-value=0.0063 Score=46.17 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+|+|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 385
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.78 E-value=0.11 Score=47.74 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHHHHHHHhcC-ceEEEEEecccCCC--CcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 281 VLQYINEFVQG-KKVLLVLDDLWWNA--YPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 281 ~~~~l~~~L~~-kr~LLVLDdv~~~~--~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.....++.+.. +-=|||||.+-..- ..-..+.+...+...+.+..||+|-|..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 34445555544 44599999973221 0224567777887778889999999977
No 386
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.78 E-value=0.0076 Score=57.05 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+...+|+|+|++|+|||||++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 387
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.77 E-value=0.054 Score=57.01 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
.++++++|++|+||||++..++........-..+..++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 469999999999999998887763221122234555654
No 388
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.13 Score=49.95 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=31.6
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+|+||+.-+.-+......+...+... ..|..||++|.+.
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~ 192 (241)
T PRK14250 141 SIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM 192 (241)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 3555555677899999975544455555565555542 2366788877765
No 389
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.75 E-value=0.085 Score=51.02 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=32.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+.-..-+....+.+...+... ..+..||++|.+.
T Consensus 140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3455556677899999975554455666666666542 2266788887765
No 390
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.14 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||++.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999976
No 391
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.75 E-value=0.047 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+.+|+|.|+.|+||||+|+.+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999987754
No 392
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.12 Score=49.78 Aligned_cols=51 Identities=12% Similarity=-0.029 Sum_probs=32.9
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
-.+...+..++-+++||+.-+.-+....+.+...+.....+..||++|.+.
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 197 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRL 197 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 345555666777999999755444555666666665433466788888765
No 393
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.12 Score=50.99 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=32.4
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.-.+...+..++-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 334556666788899999975443344555555555432 2366788887765
No 394
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.1 Score=50.61 Aligned_cols=50 Identities=22% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.|...+...+-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 205 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3455556677899999975544455555565555442 2366778777765
No 395
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.14 Score=49.36 Aligned_cols=50 Identities=10% Similarity=0.164 Sum_probs=31.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+--..-+......+...+... ..|..||++|.+.
T Consensus 139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 190 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL 190 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3445556677899999875444455555565555432 2366788888766
No 396
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.11 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++..
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999764
No 397
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.73 E-value=0.02 Score=56.15 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=31.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
+...++.|.|++|+|||+++.+++.. ....=..+++++...+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVESPA 76 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCCc
Confidence 45679999999999999999998663 22223457778876433
No 398
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.73 E-value=0.029 Score=53.75 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=31.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD 240 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 240 (597)
...++.|.|.+|+|||+++.+++.. ....=..++|++.....+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~--~~~~g~~~~y~s~e~~~~ 57 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQ--GLKNGEKAMYISLEEREE 57 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCHH
Confidence 4679999999999999999998763 222234577888766543
No 399
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.12 Score=50.54 Aligned_cols=50 Identities=16% Similarity=0.041 Sum_probs=30.8
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.|...+..++-+|+||+--+.-+......+...+.....+..||++|.+.
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 208 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSP 208 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCH
Confidence 34555566788999999754433445555555554433346777777765
No 400
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.73 E-value=0.12 Score=49.58 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=31.8
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+...+=+|+||+--..-+....+.+...+... ..|..||++|.+.
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3455555677799999975544455556666655432 2366788888765
No 401
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.73 E-value=0.095 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|+|+.|+|||||++.++.-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999998753
No 402
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.72 E-value=0.0087 Score=56.74 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+..+|+|.|++|+|||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999873
No 403
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.71 E-value=0.084 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+.++.++|++|+||||.+..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999998888773
No 404
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.71 E-value=0.094 Score=50.47 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+...+..++=+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 124 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 175 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175 (230)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3555566677899999975444455555666555432 2366788887765
No 405
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.71 E-value=0.037 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+...+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 406
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.70 E-value=0.064 Score=56.94 Aligned_cols=40 Identities=35% Similarity=0.386 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
...++.|.|++|+|||||+.+++.. ....-..++|++...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE 118 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc
Confidence 4569999999999999999999874 322223567887654
No 407
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.089 Score=48.67 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+...|.++.||+|+||||+.+.+-+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 3568999999999999999998854
No 408
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.69 E-value=0.03 Score=57.38 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCCh
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDS 221 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 221 (597)
.++=+-|||..|.|||.|+-.+|+..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~l 86 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSL 86 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhC
Confidence 56789999999999999999999863
No 409
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.67 E-value=0.091 Score=52.51 Aligned_cols=134 Identities=18% Similarity=0.093 Sum_probs=68.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeE-------------------EEEecCCCchhhhhhh---hhhhccc
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRI-------------------WVSASYPRDEIRVARD---EISVARD 254 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-------------------wv~~~~~~~~~~~~~~---~~~~~~~ 254 (597)
..++++.|+.|+|||||.+.+..-. +. ..+.+ ++.-...+........ .+.....
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~--~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLL--KP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCc--CC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence 4699999999999999999998732 11 22222 2221111111111111 1111111
Q ss_pred ---chHHHHHHHHHHhccCCCCch------hhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCC-
Q 041007 255 ---RDEIRVAKAILESLKGSVSSQ------VEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEG- 323 (597)
Q Consensus 255 ---~~~~~~~~~il~~l~~~~~~~------~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~g- 323 (597)
.........+++.++...... ..-..-.-.+...|-.++=+++||+--+.-++..-..+...+... ..|
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~ 187 (293)
T COG1131 108 LSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187 (293)
T ss_pred CChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 112345666777766553111 111112223445566788999999864443344444455555432 233
Q ss_pred cEEEEEccCC
Q 041007 324 SRILVTRSGG 333 (597)
Q Consensus 324 s~IIvTtR~~ 333 (597)
..||+||...
T Consensus 188 ~tvlissH~l 197 (293)
T COG1131 188 VTILLSTHIL 197 (293)
T ss_pred cEEEEeCCcH
Confidence 6888888765
No 410
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.66 E-value=0.1 Score=51.81 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=34.2
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.-.|...+..++-+|+||+.-..-+......+...+... ..|..||++|.+.
T Consensus 148 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 148 RVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 334566666788899999976554455556666655442 2377888887765
No 411
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.65 E-value=0.098 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++.-
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999763
No 412
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.65 E-value=0.03 Score=54.66 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 413
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.65 E-value=0.23 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|.|||||.+.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999999864
No 414
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.64 E-value=0.18 Score=49.97 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=30.7
Q ss_pred HHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 285 INEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 285 l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
+.+.+-.++=+|++|+....-+......+...+.....++.||++|.+.
T Consensus 149 LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~ 197 (275)
T cd03289 149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI 197 (275)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCH
Confidence 4445556678999999765544555566666665434466677766554
No 415
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.63 E-value=0.05 Score=58.60 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=31.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
+...++.|.|++|+|||||+.+++.. ...+-..+++++..+..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEESR 303 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCH
Confidence 35689999999999999999999874 32333456777765543
No 416
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.63 E-value=0.061 Score=50.66 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHH-HHHHhhcCCC-C-CcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWE-QLMYSLKSGS-E-GSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~-~l~~~l~~~~-~-gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+.-..-+..... .+...+.... . +..||++|.+.
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~ 183 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE 183 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 3455666788999999985544344555 5555554432 2 56677777765
No 417
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.63 E-value=0.14 Score=51.53 Aligned_cols=50 Identities=22% Similarity=0.154 Sum_probs=31.8
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~ 333 (597)
.|...+-.++=+|+||+--..-+...-..+...+.. ...|..||+||...
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l 198 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM 198 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 355666678899999986444334444444444433 23478899999776
No 418
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.62 E-value=0.039 Score=52.86 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.|.|.|++|+||||+|+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999977
No 419
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.084 Score=49.74 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHhhCCCCCC----cCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDE----ESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+-|-+-..+++.+...-.-.+. ..+ -..++-|.++|++|.|||.||+.|+++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qig-idpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIG-IDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhC-CCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 34577777777777664321100 000 124677889999999999999999995
No 420
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.61 E-value=0.17 Score=49.35 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=31.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+.-+.-+......+...+.....+..||++|.+.
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 207 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNM 207 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 34555566778999999755443455555655554433456778887765
No 421
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.61 E-value=0.12 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||++.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999875
No 422
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.052 Score=54.43 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhc
Q 041007 20 QMNGARLLVGGVVTDVEKLRSHLEAIREVLDDAEK 54 (597)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~ 54 (597)
....++.+++.+..-.-.++.-|..|+..+..+..
T Consensus 11 k~ar~~al~G~~d~~~~~~~g~~~~~~r~l~s~~d 45 (491)
T KOG0738|consen 11 KLAREYALLGNYDSAGIYYRGLLYLMNRYLVSTGD 45 (491)
T ss_pred HHHHHHHHhcCcchhHHHHHhHHHHHHHHHhccCC
Confidence 46678888899988888999999999888876553
No 423
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.61 E-value=0.19 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|.|||||++.++..
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 424
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.17 Score=49.50 Aligned_cols=50 Identities=6% Similarity=0.033 Sum_probs=30.6
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+...+-+++||+.-..-+......+...+.....+..||++|.+.
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~ 208 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNM 208 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCH
Confidence 45555566788999999755444445555555554332345777777665
No 425
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.59 E-value=0.033 Score=60.15 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++|....++++.+.+..... ....|.|.|..|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~--------~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR--------SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC--------CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3589999999999888865443 3467899999999999999999874
No 426
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.59 E-value=0.016 Score=56.19 Aligned_cols=47 Identities=23% Similarity=0.183 Sum_probs=36.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
++..+|+|+|.||+|||||.-.+......+++--.++-|+-|.++.-
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCC
Confidence 46789999999999999999998876545555555677777777665
No 427
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.58 E-value=0.19 Score=48.02 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=33.3
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
-.+...+-.++-++++|+--..-+......+...+... ..|..||++|.+.
T Consensus 122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~ 173 (223)
T TIGR03771 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173 (223)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34556666788899999975444355555565555432 3477788888765
No 428
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.12 Score=50.15 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.+...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999764
No 429
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.56 E-value=0.12 Score=58.73 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....++|+|+.|+|||||++.+..
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999965
No 430
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.56 E-value=0.26 Score=51.91 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhh--CCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 172 NAEKQKILQLLK--GESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 172 ~~e~~~l~~~L~--~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+.++..||. .... ++.+.+++.|+||+|+||||.++.++..
T Consensus 88 kkKI~eVk~WL~~~~~~~-----~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFT-----PKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred HHhHHHHHHHHHHHHHhc-----cCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 355678888887 1111 1235679999999999999999998773
No 431
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.16 Score=56.69 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=27.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEec
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSAS 236 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 236 (597)
..+++++|+.|+||||.+..++...........+..++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 4799999999999999998888742222222344555443
No 432
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.56 E-value=0.018 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+|.+.|.-|+||||+++.+++.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999885
No 433
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.56 E-value=0.16 Score=49.81 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=30.9
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
-.|...+..++-+|+||+.-+.-+......+...+.....+..||++|.+.
T Consensus 165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~ 215 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNM 215 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 345556667788999999754433444555555554333355677777655
No 434
>PRK06762 hypothetical protein; Provisional
Probab=95.56 E-value=0.0087 Score=54.39 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|.|+|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 435
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.55 E-value=0.081 Score=56.96 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++|+...+.++...+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~--------~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR--------SSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc--------cCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 3588998888888777764432 3456889999999999999999874
No 436
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.093 Score=49.89 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..-.|+|.|++|+|||||.+.+.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346999999999999999999964
No 437
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.16 Score=50.20 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=31.4
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.|...+-.++-+|+||+--..-+......+...+.....+..||++|.+.
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~ 222 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSM 222 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCH
Confidence 45555666788999999755444555555655554433355677777664
No 438
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.53 E-value=0.2 Score=53.61 Aligned_cols=134 Identities=12% Similarity=0.062 Sum_probs=65.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEE-------ecCCCchhhhhhhhhhh------cccchHHHHHHH
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVS-------ASYPRDEIRVARDEISV------ARDRDEIRVAKA 263 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 263 (597)
..+++|.|+.|+|||||++.++.... ...+.+++. ..............+.. ............
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 46999999999999999999987421 112222221 11000000011111100 000111122334
Q ss_pred HHHhccCCC------CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCC
Q 041007 264 ILESLKGSV------SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 264 il~~l~~~~------~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~ 333 (597)
+++.++... .....-+...-.|...+...+-+|+||+--..-+......+...+.. ...|..||++|.+.
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl 203 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 444443321 11111122233455566677889999997544334444455555433 23466788888765
No 439
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.51 E-value=0.066 Score=51.14 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCCh
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDS 221 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 221 (597)
.++.+|.++||+|+||||..+.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 457788999999999999999998753
No 440
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.51 E-value=0.017 Score=55.27 Aligned_cols=60 Identities=23% Similarity=0.254 Sum_probs=35.9
Q ss_pred hHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 174 EKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 174 e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
+..++++.+.... ++..+|+|+|+||+|||||...+....+.+++--.++-|+-+.+++-
T Consensus 14 ~~~~ll~~l~~~~--------g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHT--------GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGT--------T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhc--------CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 4455555555332 35679999999999999999998874333333334555655555543
No 441
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.50 E-value=0.055 Score=60.66 Aligned_cols=47 Identities=15% Similarity=0.368 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+.++|....+.++.+.+..... ....|.|+|..|+||+++|+.+++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~--------~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK--------SSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC--------cCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4578999889888888875543 2345889999999999999999874
No 442
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.48 E-value=0.13 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|.|+.|.|||||++.++.-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999763
No 443
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.48 E-value=0.16 Score=49.81 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=30.9
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+++||+--+.-+......+...+.....+..||++|.+.
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~ 213 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNM 213 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCH
Confidence 34555556778999999754433555555555554333356777777765
No 444
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.48 E-value=0.2 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|.|+.|+|||||++.++..
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999874
No 445
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.47 E-value=0.15 Score=49.09 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++.-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999763
No 446
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.21 Score=48.90 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=32.8
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.-.|...+-.++-+++||+--..-+......+...+.....+..||++|.+.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~ 212 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNP 212 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCH
Confidence 3345555666788999998654433455556666654433357788888765
No 447
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.45 E-value=0.18 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|+|+.|.|||||++.++..
T Consensus 108 Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 108 NKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999864
No 448
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.44 E-value=0.08 Score=56.24 Aligned_cols=40 Identities=35% Similarity=0.373 Sum_probs=29.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
...++.|.|.+|+|||||+.++... ....-..++|++...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 4579999999999999999998764 222223577887543
No 449
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.44 E-value=0.18 Score=48.53 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|.|+.|+|||||++.++.-
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999999874
No 450
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.14 Score=52.46 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=32.3
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.|...|..++-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~ 201 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM 201 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4555566778899999975444455555666655542 2367788888765
No 451
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.18 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|+|+.|.|||||++.++--
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999763
No 452
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.43 E-value=0.12 Score=57.08 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....++|+|+.|.|||||++.+...
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999764
No 453
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.03 Score=51.37 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 454
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.42 E-value=0.16 Score=50.17 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=30.9
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.|...+-.++-+|+||+--+.-+......+...+... ..|..||++|.+.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 3455555677899999965443344555555555442 2366788887764
No 455
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.1 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999874
No 456
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.15 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999998764
No 457
>PRK06547 hypothetical protein; Provisional
Probab=95.38 E-value=0.014 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+|+|.|++|+||||+|..+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999873
No 458
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.38 E-value=0.17 Score=49.45 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=30.6
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--..-+......+...+.....+..||++|.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~ 208 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 34455556778999999744333445555555554333466777777765
No 459
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.16 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|.|||||.+.++.-
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999763
No 460
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.36 E-value=0.24 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|.|+.|+|||||++.+.-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999975
No 461
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.78 Score=45.80 Aligned_cols=96 Identities=8% Similarity=0.069 Sum_probs=60.0
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccce-eecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~es~~Lf 369 (597)
+++-++|+|++.... ......+...+...+.++.+|++|.+...... -+...+. +++.++++++..+.+
T Consensus 89 ~~~KvvII~~~e~m~-~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~---------TI~SRc~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 89 SQKKILIIKNIEKTS-NSLLNALLKTIEEPPKDTYFLLTTKNINKVLP---------TIVSRCQVFNVKEPDQQKILAKL 158 (299)
T ss_pred CCceEEEEecccccC-HHHHHHHHHHhhCCCCCeEEEEEeCChHhChH---------HHHhCeEEEECCCCCHHHHHHHH
Confidence 467788999987665 55667788888777778888776654311000 1111122 999999999998777
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKIL 406 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 406 (597)
.... . . .+.+..++...+|.=-|+..+
T Consensus 159 ~~~~----~-~-----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 159 LSKN----K-E-----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHcC----C-C-----hhHHHHHHHHcCCHHHHHHHH
Confidence 6531 1 1 234566666777633455553
No 462
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.18 Score=49.17 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=31.1
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
-.+...+-.++-+|+||+.-..-+......+...+.....+..||++|.+.
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~ 205 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNI 205 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 344555566788999999754433445555555554333356777777765
No 463
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.35 E-value=0.23 Score=56.60 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|+.|+|||||++.+..-
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999653
No 464
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.33 E-value=0.22 Score=50.22 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=31.0
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~ 333 (597)
.|...+..++-+|+||+--+.-+...-..+...+.. ...|..||++|.+.
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~ 195 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 195 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 355556678889999986444334444444444433 13477888888765
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.33 E-value=0.014 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|+|.|++|+||||+++.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 466
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.23 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|.|+.|+|||||++.++..
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3469999999999999999999763
No 467
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.21 Score=48.84 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=31.6
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--+.-+......+...+... ..|..||++|.+.
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3555566678899999975544455555565555432 2366788887765
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.30 E-value=0.086 Score=57.33 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc-CCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccC
Q 041007 192 GSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN-FDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKG 270 (597)
Q Consensus 192 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 270 (597)
++=+...++.|.|.+|+|||+|+.++.. ....+ -..++|++.... .+-+..-+..++-
T Consensus 26 GG~p~Gs~~li~G~pGsGKT~l~~qf~~--~~~~~~ge~~lyis~ee~-------------------~~~i~~~~~~~g~ 84 (509)
T PRK09302 26 GGLPKGRPTLVSGTAGTGKTLFALQFLV--NGIKRFDEPGVFVTFEES-------------------PEDIIRNVASFGW 84 (509)
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCEEEEEccCC-------------------HHHHHHHHHHcCC
Q ss_pred CCCchh-----------------------hHHHHHHHHHHHhc-CceEEEEEecccC----CCCcchHHHHHHhhcC--C
Q 041007 271 SVSSQV-----------------------EMETVLQYINEFVQ-GKKVLLVLDDLWW----NAYPRYWEQLMYSLKS--G 320 (597)
Q Consensus 271 ~~~~~~-----------------------~~~~~~~~l~~~L~-~kr~LLVLDdv~~----~~~~~~~~~l~~~l~~--~ 320 (597)
...... +.+.+...+.+... .+.-.+|+|.+.. .+...........+.. .
T Consensus 85 d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk 164 (509)
T PRK09302 85 DLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLK 164 (509)
T ss_pred CHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHH
Q ss_pred CCCcEEEEEc
Q 041007 321 SEGSRILVTR 330 (597)
Q Consensus 321 ~~gs~IIvTt 330 (597)
..|..+|+|+
T Consensus 165 ~~g~TvLlt~ 174 (509)
T PRK09302 165 QKGVTAVITG 174 (509)
T ss_pred hCCCEEEEEE
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.30 E-value=0.036 Score=56.77 Aligned_cols=108 Identities=11% Similarity=0.156 Sum_probs=57.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchh
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQV 276 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 276 (597)
...|.|.|+.|+||||++..+.+ .+..+....++. +.++.... . .. ...+..+-.. ..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~~--~------------~~-~~~~i~q~ev----g~ 179 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEYV--H------------RN-KRSLINQREV----GL 179 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhhh--c------------cC-ccceEEcccc----CC
Confidence 36899999999999999999877 344344444443 22221110 0 00 0000000000 01
Q ss_pred hHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccC
Q 041007 277 EMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSG 332 (597)
Q Consensus 277 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~ 332 (597)
........++..|+..+=+|++|.+.+. ..+..... ....|..++.|...
T Consensus 180 ~~~~~~~~l~~~lr~~pd~i~vgEird~---~~~~~~l~---aa~tGh~v~~T~Ha 229 (343)
T TIGR01420 180 DTLSFANALRAALREDPDVILIGEMRDL---ETVELALT---AAETGHLVFGTLHT 229 (343)
T ss_pred CCcCHHHHHHHhhccCCCEEEEeCCCCH---HHHHHHHH---HHHcCCcEEEEEcC
Confidence 1123455677778888999999999533 34443332 23345556666543
No 470
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.30 E-value=0.26 Score=48.40 Aligned_cols=52 Identities=12% Similarity=0.055 Sum_probs=32.6
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC--CCCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS--GSEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~--~~~gs~IIvTtR~~ 333 (597)
.-.+...+..++-+|+||+.-..-+......+...+.. ...+..||++|.+.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~ 211 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL 211 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 33455555667889999997554445556666665554 22366777777665
No 471
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.29 E-value=0.15 Score=52.18 Aligned_cols=51 Identities=18% Similarity=0.086 Sum_probs=32.9
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
-.|...|..++-+|++|+.-+.-+...-..+...+... ..|..||++|.+.
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~ 201 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM 201 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34566677788899999975544454555555555442 2367788877765
No 472
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.24 Score=48.92 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.|...+..++-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 196 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4555666778899999975444344555555555432 2366788887765
No 473
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.29 E-value=0.012 Score=55.46 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 041007 198 PVIWILGNEGIGKTALARQVF 218 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~ 218 (597)
++++|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 474
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.18 Score=49.36 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=32.6
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.-.|...+..++-+|+||+.-+.-+...-..+...+... ..|..||++|.+.
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 334555666788899999975544344555555555432 2367788887765
No 475
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.21 Score=49.51 Aligned_cols=52 Identities=23% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.-.|...|..++-+|+||+.-..-+......+...+... ..|..||++|.+.
T Consensus 146 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~ 198 (274)
T PRK13647 146 RVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV 198 (274)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 334556667788899999976554455555555555432 2367788887765
No 476
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.27 E-value=0.068 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....++|+|+.|+|||||++.+..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~ 187 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLAR 187 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999998876
No 477
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.23 Score=49.21 Aligned_cols=50 Identities=16% Similarity=0.022 Sum_probs=32.2
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.|...+..++=+|+||+--..-+....+.+...+.....+..||++|.+.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~ 220 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45555667788999999754444555555665555433356788888766
No 478
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.26 E-value=0.21 Score=48.70 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=31.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+++||+.-..-+......+...+.....+..||++|.+.
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~ 205 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNM 205 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 45555666778999999755444555566665554433456677777665
No 479
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.26 E-value=0.23 Score=49.18 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=31.2
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
-.|...+-.++-+|+||+--..-+......+...+.....+..||++|.+.
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~ 227 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNM 227 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCH
Confidence 345555666788999999754433445555555554432345677777765
No 480
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.26 E-value=0.19 Score=57.04 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....++|+|+.|.|||||++.+..-
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999999764
No 481
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.26 E-value=0.095 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+...+|+|.|+.|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 482
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.3 Score=47.67 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=30.6
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+-.++-+|+||+--..-+......+...+.....+..||++|.+.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~ 206 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNM 206 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 44555566788999999754433445555555544333466777777655
No 483
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.24 E-value=0.033 Score=51.30 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+|+|.|.+|+||||||..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 484
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.059 Score=48.20 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+..+|.++|.+|+||||+|..+...
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999883
No 485
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.24 E-value=0.086 Score=51.12 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=31.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPR 239 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~ 239 (597)
...++.|.|++|+|||+++.+++.+. ...+=..++|++...+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEMSK 54 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCCCH
Confidence 45699999999999999999987642 22213456777766544
No 486
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.26 Score=48.16 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=30.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.+...+..++-+|+||+--..-+......+...+.....+..||++|.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~ 208 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNM 208 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecH
Confidence 35555666788999999754433445555555554433356677777655
No 487
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.22 E-value=0.25 Score=48.43 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 488
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.21 E-value=0.019 Score=53.08 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=29.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
.++|.|+|+.|+|||||+..+.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 47899999999999999999988 45566755555443
No 489
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.19 E-value=0.28 Score=47.78 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 469999999999999999999874
No 490
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.18 E-value=0.16 Score=49.00 Aligned_cols=138 Identities=16% Similarity=0.104 Sum_probs=68.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhc---c-------------C-CeeEEEEecCCCchhhhhhhhhhhcc-----
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKA---N-------------F-DKRIWVSASYPRDEIRVARDEISVAR----- 253 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~-------------F-~~~~wv~~~~~~~~~~~~~~~~~~~~----- 253 (597)
...+++|.|+.|+|||||.+.++.-..... . + ....+++=+..........+.+...+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 457999999999999999999977321100 0 0 11334432221111111111111100
Q ss_pred -----cchHHHHHHHHHHhccCCC------CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC--C
Q 041007 254 -----DRDEIRVAKAILESLKGSV------SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS--G 320 (597)
Q Consensus 254 -----~~~~~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~--~ 320 (597)
.....+.....++.++... .....-+.-.-.+...|..+.=+|+||+--+.-+...--.+...+.. .
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 0111234444555554321 12222344455677788888889999984221111122223333332 2
Q ss_pred CCCcEEEEEccCC
Q 041007 321 SEGSRILVTRSGG 333 (597)
Q Consensus 321 ~~gs~IIvTtR~~ 333 (597)
..|..||+++.+-
T Consensus 187 ~~~~tvv~vlHDl 199 (258)
T COG1120 187 EKGLTVVMVLHDL 199 (258)
T ss_pred hcCCEEEEEecCH
Confidence 4577888888776
No 491
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.18 E-value=0.18 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....++|.|+.|+|||||.+.+...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~ 134 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI 134 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc
Confidence 3578999999999999999999883
No 492
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.18 E-value=0.23 Score=51.25 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|.|+.|+|||||++.++.-
T Consensus 23 Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999764
No 493
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.15 E-value=0.25 Score=48.35 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|+|+.|.|||||.+.++.-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999763
No 494
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.15 E-value=0.0089 Score=50.78 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCChhhhccCC
Q 041007 200 IWILGNEGIGKTALARQVFDDSDVKANFD 228 (597)
Q Consensus 200 v~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 228 (597)
|.|+|.+|+|||++|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999988 4555553
No 495
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.15 E-value=0.22 Score=49.08 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|+|+.|+|||||.+.++.-
T Consensus 39 Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 39 GQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 496
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.15 E-value=0.22 Score=48.92 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=30.9
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
-.|...+..++-+++||+--..-+......+...+.....+..||++|.+.
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~ 214 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNM 214 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 345555666778999999755444555555555554433345666666654
No 497
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.14 E-value=0.25 Score=50.55 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcC-CCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKS-GSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~-~~~gs~IIvTtR~~ 333 (597)
.|...|..++-+|+||+--+.-+...-..+...+.. ...|..||++|.+.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l 232 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 232 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 455566678889999987544334444444444433 22477899998766
No 498
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.14 E-value=0.059 Score=58.23 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=38.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++|....++++.+.+..... ....|.|+|..|+||+.+|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~--------s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR--------SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC--------CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999888865443 3467899999999999999999874
No 499
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.13 E-value=0.036 Score=49.53 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 173 AEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 173 ~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+.+++|.++|. + +++++.|+.|+|||||...+...
T Consensus 24 ~g~~~l~~~l~------------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK------------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT------------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc------------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 46778888886 2 79999999999999999999885
No 500
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.25 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
Done!