Query 041007
Match_columns 597
No_of_seqs 364 out of 2818
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 04:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.5E-49 1.2E-53 429.5 25.1 312 169-549 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-39 7.3E-44 387.7 25.8 318 162-547 120-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.2E-39 4.2E-44 359.2 17.2 280 168-540 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.2E-37 1.8E-41 338.3 24.0 313 164-544 122-449 (591)
5 2qen_A Walker-type ATPase; unk 99.8 3.3E-17 1.1E-21 167.7 20.5 311 162-541 8-349 (350)
6 1w5s_A Origin recognition comp 99.7 3.7E-17 1.3E-21 171.4 18.8 310 164-519 20-372 (412)
7 2fna_A Conserved hypothetical 99.7 1.7E-16 5.8E-21 162.8 19.2 305 163-540 10-356 (357)
8 3qfl_A MLA10; coiled-coil, (CC 99.7 2E-17 6.8E-22 138.7 4.7 80 6-91 2-83 (115)
9 2v1u_A Cell division control p 99.6 6.4E-13 2.2E-17 137.7 26.5 304 164-519 17-352 (387)
10 1fnn_A CDC6P, cell division co 99.6 5.9E-13 2E-17 138.1 25.6 303 165-520 16-353 (389)
11 2qby_B CDC6 homolog 3, cell di 99.5 6.6E-13 2.3E-17 137.5 24.3 302 165-520 19-341 (384)
12 2qby_A CDC6 homolog 1, cell di 99.5 1.5E-12 5E-17 134.9 19.4 304 164-518 18-348 (386)
13 1njg_A DNA polymerase III subu 99.4 1.1E-11 3.8E-16 119.2 19.3 200 166-410 23-231 (250)
14 2chg_A Replication factor C sm 99.3 1.9E-11 6.6E-16 115.9 16.6 185 166-407 17-204 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.2 1.3E-10 4.6E-15 117.2 17.3 268 166-517 12-324 (324)
16 1sxj_B Activator 1 37 kDa subu 99.2 1.7E-10 5.8E-15 116.2 13.5 186 166-408 21-211 (323)
17 1iqp_A RFCS; clamp loader, ext 99.0 2.4E-09 8.1E-14 108.0 14.6 186 166-408 25-213 (327)
18 3te6_A Regulatory protein SIR3 99.0 5.9E-09 2E-13 103.3 16.2 178 167-374 21-212 (318)
19 1jr3_A DNA polymerase III subu 98.9 3.1E-08 1E-12 101.8 17.1 196 166-407 16-221 (373)
20 2chq_A Replication factor C sm 98.8 2.1E-08 7.2E-13 100.6 11.9 183 166-406 17-203 (319)
21 3bos_A Putative DNA replicatio 98.7 2.2E-07 7.6E-12 88.8 15.3 180 166-407 28-217 (242)
22 1jbk_A CLPB protein; beta barr 98.7 7.9E-08 2.7E-12 88.3 11.4 45 166-220 22-66 (195)
23 3pfi_A Holliday junction ATP-d 98.7 1.6E-06 5.4E-11 87.7 21.0 257 166-519 29-314 (338)
24 1sxj_D Activator 1 41 kDa subu 98.7 3.6E-07 1.2E-11 93.0 15.6 195 166-406 37-234 (353)
25 3pvs_A Replication-associated 98.5 2.1E-06 7E-11 89.8 17.3 180 166-405 26-213 (447)
26 1sxj_E Activator 1 40 kDa subu 98.5 7.2E-07 2.5E-11 90.8 13.6 104 291-407 133-237 (354)
27 3h4m_A Proteasome-activating n 98.5 1.3E-06 4.5E-11 85.9 14.9 196 164-406 15-230 (285)
28 3uk6_A RUVB-like 2; hexameric 98.5 3.3E-06 1.1E-10 86.3 18.4 106 293-405 190-301 (368)
29 2qz4_A Paraplegin; AAA+, SPG7, 98.5 5.1E-06 1.7E-10 80.5 17.9 197 165-406 5-221 (262)
30 1sxj_A Activator 1 95 kDa subu 98.4 2.6E-06 8.9E-11 91.2 15.2 205 166-408 39-254 (516)
31 2z4s_A Chromosomal replication 98.4 3.6E-06 1.2E-10 88.1 15.6 187 197-425 130-331 (440)
32 3eie_A Vacuolar protein sortin 98.4 9.3E-06 3.2E-10 81.3 17.9 193 165-407 17-228 (322)
33 1a5t_A Delta prime, HOLB; zinc 98.4 7.9E-06 2.7E-10 82.3 17.1 98 291-407 107-205 (334)
34 3u61_B DNA polymerase accessor 98.4 4.2E-06 1.4E-10 84.0 15.0 177 166-403 26-212 (324)
35 3n70_A Transport activator; si 98.4 9.6E-07 3.3E-11 77.4 8.6 115 167-333 2-116 (145)
36 2p65_A Hypothetical protein PF 98.4 1.5E-06 5.1E-11 79.2 10.2 45 166-220 22-66 (187)
37 3syl_A Protein CBBX; photosynt 98.3 4.9E-06 1.7E-10 82.8 14.2 173 167-375 32-219 (309)
38 1l8q_A Chromosomal replication 98.3 1.7E-05 5.9E-10 79.5 17.4 162 196-402 36-203 (324)
39 3d8b_A Fidgetin-like protein 1 98.3 9.4E-06 3.2E-10 82.5 15.6 194 166-408 84-296 (357)
40 1d2n_A N-ethylmaleimide-sensit 98.3 1.1E-05 3.7E-10 78.8 14.9 47 166-219 33-86 (272)
41 1sxj_C Activator 1 40 kDa subu 98.3 1E-05 3.4E-10 81.8 14.9 178 166-403 25-208 (340)
42 3b9p_A CG5977-PA, isoform A; A 98.3 3.4E-05 1.1E-09 76.2 17.8 193 166-407 21-233 (297)
43 1xwi_A SKD1 protein; VPS4B, AA 98.2 5.1E-05 1.7E-09 75.9 18.6 196 165-408 11-224 (322)
44 3vfd_A Spastin; ATPase, microt 98.2 3.2E-05 1.1E-09 79.6 16.8 194 165-407 114-326 (389)
45 2qp9_X Vacuolar protein sortin 98.2 2.5E-05 8.5E-10 79.3 15.1 193 166-407 51-261 (355)
46 3co5_A Putative two-component 98.1 3.2E-06 1.1E-10 73.8 6.0 47 166-220 4-50 (143)
47 3ec2_A DNA replication protein 98.1 1E-05 3.5E-10 73.6 9.1 43 171-220 19-61 (180)
48 2w58_A DNAI, primosome compone 98.0 1.2E-05 4.2E-10 74.5 8.4 55 173-235 36-90 (202)
49 1qvr_A CLPB protein; coiled co 98.0 1.6E-05 5.3E-10 90.5 10.7 45 166-220 170-214 (854)
50 4b4t_J 26S protease regulatory 98.0 0.00019 6.7E-09 72.8 17.4 187 166-400 148-354 (405)
51 2zan_A Vacuolar protein sortin 98.0 0.00011 3.7E-09 76.9 16.1 194 165-407 133-345 (444)
52 3cf0_A Transitional endoplasmi 98.0 0.00012 4.1E-09 72.4 15.5 190 166-402 15-223 (301)
53 4b4t_L 26S protease subunit RP 98.0 0.0003 1E-08 72.6 18.6 185 166-400 181-387 (437)
54 1in4_A RUVB, holliday junction 98.0 0.0012 4E-08 66.3 22.8 49 166-219 25-73 (334)
55 3pxg_A Negative regulator of g 98.0 2E-05 6.9E-10 83.1 10.2 44 166-219 180-223 (468)
56 4b4t_K 26S protease regulatory 98.0 0.00012 4.3E-09 75.2 15.7 54 166-219 172-228 (428)
57 3hu3_A Transitional endoplasmi 97.9 4.7E-05 1.6E-09 80.4 11.9 194 166-406 204-414 (489)
58 4fcw_A Chaperone protein CLPB; 97.9 3.7E-05 1.3E-09 76.4 10.6 68 167-237 18-85 (311)
59 1lv7_A FTSH; alpha/beta domain 97.9 0.00019 6.4E-09 69.2 15.0 55 165-219 11-67 (257)
60 2gno_A DNA polymerase III, gam 97.9 6.1E-05 2.1E-09 74.4 11.5 151 170-373 1-152 (305)
61 4b4t_H 26S protease regulatory 97.9 0.00046 1.6E-08 71.1 17.4 54 166-219 209-265 (467)
62 4b4t_M 26S protease regulatory 97.8 0.00035 1.2E-08 71.9 15.8 54 166-219 181-237 (434)
63 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00028 9.5E-09 79.3 15.9 45 166-220 186-230 (758)
64 2ce7_A Cell division protein F 97.8 0.00056 1.9E-08 71.6 17.0 188 166-400 16-221 (476)
65 2bjv_A PSP operon transcriptio 97.8 5.9E-05 2E-09 73.1 8.7 47 166-220 6-52 (265)
66 4b4t_I 26S protease regulatory 97.7 0.00097 3.3E-08 68.0 17.3 54 166-219 182-238 (437)
67 1ofh_A ATP-dependent HSL prote 97.7 0.00043 1.5E-08 68.5 14.4 54 166-219 15-72 (310)
68 2c9o_A RUVB-like 1; hexameric 97.7 0.00082 2.8E-08 70.6 17.0 101 294-405 297-408 (456)
69 1ojl_A Transcriptional regulat 97.6 5.5E-05 1.9E-09 74.9 6.3 46 166-219 2-47 (304)
70 3pxi_A Negative regulator of g 97.6 0.00013 4.4E-09 81.9 9.8 45 166-220 180-224 (758)
71 3pxi_A Negative regulator of g 97.6 0.00023 7.9E-09 79.9 11.3 168 166-373 491-675 (758)
72 2r62_A Cell division protease 97.5 3.1E-05 1.1E-09 75.2 2.5 55 165-219 10-66 (268)
73 2cvh_A DNA repair and recombin 97.5 0.00067 2.3E-08 63.3 11.2 98 196-304 19-117 (220)
74 2kjq_A DNAA-related protein; s 97.5 0.00011 3.9E-09 64.2 5.2 24 197-220 36-59 (149)
75 3cf2_A TER ATPase, transitiona 97.4 0.0013 4.5E-08 72.9 14.3 185 166-400 204-407 (806)
76 3t15_A Ribulose bisphosphate c 97.3 0.00043 1.5E-08 68.0 8.1 24 196-219 35-58 (293)
77 2r44_A Uncharacterized protein 97.3 0.00052 1.8E-08 68.8 8.7 42 166-219 27-68 (331)
78 1qvr_A CLPB protein; coiled co 97.3 0.00058 2E-08 77.6 9.7 53 167-220 559-611 (854)
79 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00053 1.8E-08 77.0 9.3 53 166-219 458-510 (758)
80 1ixz_A ATP-dependent metallopr 97.2 0.0016 5.4E-08 62.4 10.9 54 165-219 15-71 (254)
81 2qgz_A Helicase loader, putati 97.2 0.00027 9.3E-09 70.0 4.9 43 171-220 133-175 (308)
82 1iy2_A ATP-dependent metallopr 97.1 0.0021 7.1E-08 62.6 10.5 56 163-219 37-95 (278)
83 1ypw_A Transitional endoplasmi 97.1 0.0024 8.2E-08 71.7 12.3 54 166-219 204-260 (806)
84 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0016 5.5E-08 61.2 9.2 38 197-236 23-60 (235)
85 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0039 1.3E-07 65.6 12.6 56 164-219 29-86 (499)
86 2b8t_A Thymidine kinase; deoxy 97.0 0.00073 2.5E-08 63.1 5.7 113 196-333 11-126 (223)
87 1n0w_A DNA repair protein RAD5 97.0 0.0025 8.5E-08 60.4 9.5 44 196-239 23-70 (243)
88 3m6a_A ATP-dependent protease 97.0 0.0013 4.5E-08 70.4 8.0 50 166-219 81-130 (543)
89 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00031 1.1E-08 68.9 2.7 34 197-235 123-156 (331)
90 2cbz_A Multidrug resistance-as 96.9 0.0072 2.5E-07 57.1 11.4 50 284-333 137-189 (237)
91 1um8_A ATP-dependent CLP prote 96.8 0.0049 1.7E-07 62.8 10.9 23 197-219 72-94 (376)
92 1g5t_A COB(I)alamin adenosyltr 96.8 0.0032 1.1E-07 57.1 7.9 52 281-333 108-163 (196)
93 2x8a_A Nuclear valosin-contain 96.7 0.017 5.7E-07 55.9 13.4 20 200-219 47-66 (274)
94 2pze_A Cystic fibrosis transme 96.7 0.014 4.7E-07 54.8 12.3 50 284-333 140-190 (229)
95 3hr8_A Protein RECA; alpha and 96.6 0.0034 1.2E-07 62.9 7.8 85 196-303 60-150 (356)
96 3io5_A Recombination and repai 96.6 0.0059 2E-07 59.6 8.6 83 199-304 30-123 (333)
97 2nq2_C Hypothetical ABC transp 96.5 0.011 3.9E-07 56.4 10.0 137 197-333 31-189 (253)
98 2ff7_A Alpha-hemolysin translo 96.5 0.015 5.2E-07 55.2 10.8 51 283-333 154-204 (247)
99 1nlf_A Regulatory protein REPA 96.5 0.0086 2.9E-07 58.2 9.1 131 196-333 29-181 (279)
100 1v5w_A DMC1, meiotic recombina 96.4 0.013 4.4E-07 58.8 10.6 46 196-241 121-170 (343)
101 2z43_A DNA repair and recombin 96.4 0.01 3.5E-07 59.0 9.4 46 196-241 106-155 (324)
102 1sgw_A Putative ABC transporte 96.4 0.021 7.3E-07 52.8 10.8 136 197-333 35-193 (214)
103 2dr3_A UPF0273 protein PH0284; 96.3 0.011 3.7E-07 56.0 9.0 41 196-238 22-62 (247)
104 2ehv_A Hypothetical protein PH 96.3 0.0034 1.2E-07 59.7 5.3 24 196-219 29-52 (251)
105 2zr9_A Protein RECA, recombina 96.3 0.0084 2.9E-07 60.2 8.3 86 196-304 60-151 (349)
106 1ji0_A ABC transporter; ATP bi 96.3 0.033 1.1E-06 52.6 12.0 23 197-219 32-54 (240)
107 1xp8_A RECA protein, recombina 96.3 0.0091 3.1E-07 60.2 8.4 86 196-304 73-164 (366)
108 2i1q_A DNA repair and recombin 96.3 0.0098 3.3E-07 59.1 8.4 46 196-241 97-156 (322)
109 2pjz_A Hypothetical protein ST 96.2 0.019 6.6E-07 55.0 10.1 131 197-333 30-185 (263)
110 4g1u_C Hemin import ATP-bindin 96.2 0.036 1.2E-06 53.3 12.0 23 197-219 37-59 (266)
111 1mv5_A LMRA, multidrug resista 96.2 0.018 6E-07 54.7 9.7 23 197-219 28-50 (243)
112 1jr3_D DNA polymerase III, del 96.2 0.083 2.9E-06 52.8 15.2 163 196-406 17-184 (343)
113 1cr0_A DNA primase/helicase; R 96.2 0.0094 3.2E-07 58.4 7.9 39 196-236 34-73 (296)
114 2ixe_A Antigen peptide transpo 96.1 0.047 1.6E-06 52.6 12.3 50 284-333 166-217 (271)
115 1u94_A RECA protein, recombina 96.1 0.011 3.7E-07 59.5 8.0 44 196-241 62-105 (356)
116 2ghi_A Transport protein; mult 96.1 0.026 8.9E-07 54.1 10.4 24 197-220 46-69 (260)
117 1vpl_A ABC transporter, ATP-bi 96.1 0.042 1.4E-06 52.4 11.7 51 283-333 155-206 (256)
118 1rz3_A Hypothetical protein rb 96.1 0.0055 1.9E-07 56.3 5.3 43 170-219 2-44 (201)
119 2orw_A Thymidine kinase; TMTK, 96.1 0.023 7.9E-07 51.3 9.1 23 198-220 4-26 (184)
120 2bbs_A Cystic fibrosis transme 96.1 0.041 1.4E-06 53.5 11.5 50 284-333 169-219 (290)
121 3lda_A DNA repair protein RAD5 96.0 0.02 7E-07 58.4 9.5 45 196-240 177-225 (400)
122 2pcj_A ABC transporter, lipopr 96.0 0.059 2E-06 50.3 12.0 52 282-333 148-200 (224)
123 2olj_A Amino acid ABC transpor 96.0 0.057 1.9E-06 51.7 12.0 50 284-333 169-219 (263)
124 2yz2_A Putative ABC transporte 96.0 0.056 1.9E-06 51.9 12.0 135 197-333 33-198 (266)
125 1pzn_A RAD51, DNA repair and r 96.0 0.024 8.1E-07 56.9 9.6 43 196-238 130-176 (349)
126 2onk_A Molybdate/tungstate ABC 96.0 0.026 8.9E-07 53.3 9.3 133 198-333 25-187 (240)
127 2px0_A Flagellar biosynthesis 95.8 0.021 7.2E-07 55.9 8.3 24 196-219 104-127 (296)
128 3nh6_A ATP-binding cassette SU 95.8 0.027 9.2E-07 55.2 9.0 24 196-219 79-102 (306)
129 3bh0_A DNAB-like replicative h 95.7 0.023 7.9E-07 56.2 8.0 41 196-238 67-107 (315)
130 3c8u_A Fructokinase; YP_612366 95.7 0.0088 3E-07 55.2 4.6 24 196-219 21-44 (208)
131 3ice_A Transcription terminati 95.6 0.01 3.4E-07 59.5 5.0 43 196-240 173-217 (422)
132 3hws_A ATP-dependent CLP prote 95.6 0.0088 3E-07 60.6 4.8 53 167-219 16-73 (363)
133 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.007 2.4E-07 63.7 4.1 42 167-220 23-64 (500)
134 1qhx_A CPT, protein (chloramph 95.6 0.0066 2.2E-07 54.4 3.4 22 198-219 4-25 (178)
135 4a74_A DNA repair and recombin 95.6 0.044 1.5E-06 51.0 9.3 42 196-237 24-69 (231)
136 3lw7_A Adenylate kinase relate 95.5 0.0068 2.3E-07 53.9 3.2 20 198-217 2-21 (179)
137 1sky_E F1-ATPase, F1-ATP synth 95.5 0.062 2.1E-06 55.5 10.7 41 197-239 151-192 (473)
138 1kgd_A CASK, peripheral plasma 95.5 0.0085 2.9E-07 54.0 3.7 23 197-219 5-27 (180)
139 3tui_C Methionine import ATP-b 95.5 0.06 2.1E-06 53.9 10.1 52 282-333 171-224 (366)
140 4a1f_A DNAB helicase, replicat 95.4 0.034 1.2E-06 55.2 8.2 40 196-237 45-84 (338)
141 1zp6_A Hypothetical protein AT 95.4 0.0084 2.9E-07 54.4 3.5 25 196-220 8-32 (191)
142 3kb2_A SPBC2 prophage-derived 95.4 0.0081 2.8E-07 53.3 3.2 22 198-219 2-23 (173)
143 3gd7_A Fusion complex of cysti 95.4 0.091 3.1E-06 53.3 11.3 24 196-219 46-69 (390)
144 1ly1_A Polynucleotide kinase; 95.3 0.0088 3E-07 53.6 3.2 22 198-219 3-24 (181)
145 3vaa_A Shikimate kinase, SK; s 95.3 0.01 3.4E-07 54.4 3.5 23 197-219 25-47 (199)
146 3b5x_A Lipid A export ATP-bind 95.3 0.11 3.6E-06 56.1 12.1 24 196-219 368-391 (582)
147 3d31_A Sulfate/molybdate ABC t 95.2 0.11 3.8E-06 51.8 11.2 133 197-333 26-188 (348)
148 3tau_A Guanylate kinase, GMP k 95.2 0.011 3.8E-07 54.6 3.7 25 196-220 7-31 (208)
149 3dm5_A SRP54, signal recogniti 95.2 0.27 9.1E-06 50.5 14.2 24 196-219 99-122 (443)
150 3tqc_A Pantothenate kinase; bi 95.2 0.017 5.9E-07 57.0 5.1 46 168-219 69-114 (321)
151 3uie_A Adenylyl-sulfate kinase 95.1 0.012 4E-07 54.0 3.6 25 196-220 24-48 (200)
152 1vma_A Cell division protein F 95.1 0.09 3.1E-06 51.5 10.1 38 196-235 103-140 (306)
153 1kag_A SKI, shikimate kinase I 95.1 0.0096 3.3E-07 53.0 2.8 22 198-219 5-26 (173)
154 2it1_A 362AA long hypothetical 95.1 0.081 2.8E-06 53.1 9.8 23 197-219 29-51 (362)
155 1knq_A Gluconate kinase; ALFA/ 95.1 0.014 4.8E-07 52.1 3.8 24 196-219 7-30 (175)
156 4eun_A Thermoresistant glucoki 95.1 0.013 4.3E-07 53.8 3.5 24 196-219 28-51 (200)
157 3trf_A Shikimate kinase, SK; a 95.1 0.012 4.2E-07 53.0 3.4 23 197-219 5-27 (185)
158 1g8p_A Magnesium-chelatase 38 95.0 0.0087 3E-07 60.1 2.5 44 166-219 24-67 (350)
159 3tr0_A Guanylate kinase, GMP k 95.0 0.014 4.6E-07 53.6 3.7 23 197-219 7-29 (205)
160 1gvn_B Zeta; postsegregational 95.0 0.019 6.6E-07 55.9 4.9 24 196-219 32-55 (287)
161 1z47_A CYSA, putative ABC-tran 95.0 0.09 3.1E-06 52.5 9.8 23 197-219 41-63 (355)
162 3t61_A Gluconokinase; PSI-biol 95.0 0.013 4.4E-07 53.7 3.4 23 197-219 18-40 (202)
163 3b60_A Lipid A export ATP-bind 95.0 0.11 3.9E-06 55.9 11.4 25 196-220 368-392 (582)
164 2rhm_A Putative kinase; P-loop 95.0 0.013 4.6E-07 53.0 3.4 24 196-219 4-27 (193)
165 3iij_A Coilin-interacting nucl 95.0 0.015 5.1E-07 52.2 3.6 24 196-219 10-33 (180)
166 3a00_A Guanylate kinase, GMP k 94.9 0.012 4E-07 53.3 2.9 22 198-219 2-23 (186)
167 1ex7_A Guanylate kinase; subst 94.9 0.012 4E-07 53.2 2.8 22 198-219 2-23 (186)
168 1y63_A LMAJ004144AAA protein; 94.9 0.017 5.8E-07 52.1 3.9 24 196-219 9-32 (184)
169 3ney_A 55 kDa erythrocyte memb 94.9 0.016 5.6E-07 52.7 3.8 24 196-219 18-41 (197)
170 3rlf_A Maltose/maltodextrin im 94.9 0.074 2.5E-06 53.6 8.9 23 197-219 29-51 (381)
171 3fvq_A Fe(3+) IONS import ATP- 94.9 0.11 3.7E-06 52.0 10.0 23 197-219 30-52 (359)
172 2qor_A Guanylate kinase; phosp 94.9 0.013 4.6E-07 53.8 3.2 24 196-219 11-34 (204)
173 3e70_C DPA, signal recognition 94.9 0.15 5.2E-06 50.4 11.1 24 196-219 128-151 (328)
174 4gp7_A Metallophosphoesterase; 94.9 0.012 4.2E-07 52.4 2.9 24 196-219 8-31 (171)
175 1oxx_K GLCV, glucose, ABC tran 94.9 0.13 4.5E-06 51.4 10.6 75 259-333 119-201 (353)
176 3jvv_A Twitching mobility prot 94.9 0.032 1.1E-06 56.1 6.1 108 198-333 124-231 (356)
177 2j41_A Guanylate kinase; GMP, 94.8 0.017 5.7E-07 53.0 3.7 23 197-219 6-28 (207)
178 1odf_A YGR205W, hypothetical 3 94.8 0.028 9.4E-07 54.8 5.4 26 195-220 29-54 (290)
179 1kht_A Adenylate kinase; phosp 94.8 0.016 5.4E-07 52.4 3.4 22 198-219 4-25 (192)
180 2qt1_A Nicotinamide riboside k 94.8 0.019 6.6E-07 52.8 4.0 24 196-219 20-43 (207)
181 3asz_A Uridine kinase; cytidin 94.7 0.016 5.4E-07 53.5 3.3 24 196-219 5-28 (211)
182 1lvg_A Guanylate kinase, GMP k 94.7 0.014 4.8E-07 53.4 2.8 23 197-219 4-26 (198)
183 3kl4_A SRP54, signal recogniti 94.7 0.33 1.1E-05 49.9 13.3 25 196-220 96-120 (433)
184 1nks_A Adenylate kinase; therm 94.7 0.015 5.2E-07 52.6 3.0 22 198-219 2-23 (194)
185 3upu_A ATP-dependent DNA helic 94.7 0.066 2.3E-06 55.9 8.3 23 198-220 46-68 (459)
186 1ukz_A Uridylate kinase; trans 94.7 0.019 6.6E-07 52.6 3.7 24 196-219 14-37 (203)
187 3e1s_A Exodeoxyribonuclease V, 94.7 0.079 2.7E-06 56.9 8.9 22 198-219 205-226 (574)
188 3cmu_A Protein RECA, recombina 94.6 0.049 1.7E-06 65.9 7.9 84 196-302 1426-1515(2050)
189 2cdn_A Adenylate kinase; phosp 94.6 0.021 7.3E-07 52.2 3.9 24 196-219 19-42 (201)
190 2c95_A Adenylate kinase 1; tra 94.6 0.02 6.7E-07 52.0 3.6 23 197-219 9-31 (196)
191 1fx0_B ATP synthase beta chain 94.6 0.1 3.5E-06 54.0 9.2 45 196-241 164-208 (498)
192 1q57_A DNA primase/helicase; d 94.6 0.085 2.9E-06 55.8 9.0 41 196-238 241-282 (503)
193 1v43_A Sugar-binding transport 94.6 0.092 3.1E-06 52.9 8.6 23 197-219 37-59 (372)
194 1rj9_A FTSY, signal recognitio 94.6 0.025 8.4E-07 55.5 4.3 24 196-219 101-124 (304)
195 1ye8_A Protein THEP1, hypothet 94.6 0.019 6.6E-07 51.5 3.3 22 199-220 2-23 (178)
196 1zuh_A Shikimate kinase; alpha 94.5 0.02 6.7E-07 50.7 3.2 24 196-219 6-29 (168)
197 2ze6_A Isopentenyl transferase 94.5 0.017 6E-07 55.1 3.1 22 198-219 2-23 (253)
198 2ga8_A Hypothetical 39.9 kDa p 94.5 0.033 1.1E-06 55.4 5.1 44 170-219 3-46 (359)
199 1via_A Shikimate kinase; struc 94.5 0.017 5.9E-07 51.5 2.8 22 198-219 5-26 (175)
200 2bdt_A BH3686; alpha-beta prot 94.5 0.019 6.5E-07 51.9 3.1 22 198-219 3-24 (189)
201 1tev_A UMP-CMP kinase; ploop, 94.5 0.02 6.7E-07 51.9 3.2 23 197-219 3-25 (196)
202 2iyv_A Shikimate kinase, SK; t 94.4 0.018 6E-07 51.9 2.8 22 198-219 3-24 (184)
203 1s96_A Guanylate kinase, GMP k 94.4 0.022 7.7E-07 53.0 3.5 24 196-219 15-38 (219)
204 1uf9_A TT1252 protein; P-loop, 94.4 0.022 7.6E-07 52.0 3.4 24 196-219 7-30 (203)
205 2p5t_B PEZT; postsegregational 94.4 0.032 1.1E-06 53.2 4.6 25 195-219 30-54 (253)
206 2wwf_A Thymidilate kinase, put 94.4 0.027 9.1E-07 51.9 3.9 24 196-219 9-32 (212)
207 2zts_A Putative uncharacterize 94.4 0.042 1.4E-06 51.9 5.4 42 196-238 29-70 (251)
208 1cke_A CK, MSSA, protein (cyti 94.3 0.022 7.6E-07 53.1 3.4 22 198-219 6-27 (227)
209 2yvu_A Probable adenylyl-sulfa 94.3 0.026 9E-07 50.9 3.7 25 196-220 12-36 (186)
210 2q6t_A DNAB replication FORK h 94.3 0.12 4E-06 53.8 9.1 41 196-237 199-239 (444)
211 2bwj_A Adenylate kinase 5; pho 94.3 0.023 7.8E-07 51.7 3.3 23 197-219 12-34 (199)
212 3umf_A Adenylate kinase; rossm 94.3 0.027 9.3E-07 52.2 3.8 25 195-219 27-51 (217)
213 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.022 7.7E-07 54.5 3.3 23 197-219 4-26 (260)
214 2bbw_A Adenylate kinase 4, AK4 94.3 0.024 8.2E-07 53.8 3.5 23 197-219 27-49 (246)
215 2vli_A Antibiotic resistance p 94.3 0.017 5.7E-07 51.9 2.2 24 196-219 4-27 (183)
216 1z6g_A Guanylate kinase; struc 94.3 0.022 7.6E-07 53.0 3.1 24 196-219 22-45 (218)
217 1znw_A Guanylate kinase, GMP k 94.3 0.026 8.8E-07 52.0 3.5 24 196-219 19-42 (207)
218 2r6a_A DNAB helicase, replicat 94.2 0.1 3.4E-06 54.4 8.4 41 196-237 202-242 (454)
219 2jaq_A Deoxyguanosine kinase; 94.2 0.024 8.2E-07 51.8 3.3 21 199-219 2-22 (205)
220 1e6c_A Shikimate kinase; phosp 94.2 0.021 7.3E-07 50.6 2.8 22 198-219 3-24 (173)
221 1jjv_A Dephospho-COA kinase; P 94.2 0.024 8.4E-07 52.0 3.3 22 198-219 3-24 (206)
222 3l0o_A Transcription terminati 94.2 0.14 4.9E-06 51.2 8.9 55 176-241 163-219 (427)
223 2plr_A DTMP kinase, probable t 94.2 0.025 8.4E-07 52.1 3.3 23 198-220 5-27 (213)
224 1nn5_A Similar to deoxythymidy 94.2 0.037 1.3E-06 51.0 4.6 23 197-219 9-31 (215)
225 1zu4_A FTSY; GTPase, signal re 94.2 0.43 1.5E-05 47.0 12.4 25 195-219 103-127 (320)
226 3cm0_A Adenylate kinase; ATP-b 94.2 0.024 8.2E-07 51.0 3.1 23 197-219 4-26 (186)
227 2if2_A Dephospho-COA kinase; a 94.2 0.024 8.4E-07 51.9 3.2 22 198-219 2-23 (204)
228 1tue_A Replication protein E1; 94.2 0.027 9.3E-07 51.2 3.4 36 175-219 45-80 (212)
229 1g29_1 MALK, maltose transport 94.2 0.2 7E-06 50.4 10.2 23 197-219 29-51 (372)
230 1xjc_A MOBB protein homolog; s 94.2 0.028 9.6E-07 49.8 3.4 25 196-220 3-27 (169)
231 1qf9_A UMP/CMP kinase, protein 94.2 0.03 1E-06 50.5 3.7 23 197-219 6-28 (194)
232 3cf2_A TER ATPase, transitiona 94.1 0.058 2E-06 59.8 6.5 57 164-220 475-534 (806)
233 3llm_A ATP-dependent RNA helic 94.1 0.22 7.5E-06 46.6 9.8 21 198-218 77-97 (235)
234 1uj2_A Uridine-cytidine kinase 94.1 0.026 9E-07 53.7 3.3 24 196-219 21-44 (252)
235 3hjn_A DTMP kinase, thymidylat 94.1 0.16 5.4E-06 46.3 8.4 22 199-220 2-23 (197)
236 3tlx_A Adenylate kinase 2; str 94.1 0.035 1.2E-06 52.6 4.1 24 196-219 28-51 (243)
237 2jeo_A Uridine-cytidine kinase 94.0 0.029 1E-06 53.2 3.5 24 196-219 24-47 (245)
238 1aky_A Adenylate kinase; ATP:A 94.0 0.03 1E-06 52.0 3.5 23 197-219 4-26 (220)
239 3aez_A Pantothenate kinase; tr 94.0 0.029 9.8E-07 55.3 3.5 24 196-219 89-112 (312)
240 2pez_A Bifunctional 3'-phospho 94.0 0.031 1.1E-06 50.0 3.3 24 196-219 4-27 (179)
241 2hf9_A Probable hydrogenase ni 93.9 0.04 1.4E-06 51.3 4.2 25 196-220 37-61 (226)
242 1htw_A HI0065; nucleotide-bind 93.9 0.033 1.1E-06 48.8 3.4 24 196-219 32-55 (158)
243 3bk7_A ABC transporter ATP-bin 93.9 0.2 6.9E-06 54.0 10.2 137 197-333 382-532 (607)
244 4a82_A Cystic fibrosis transme 93.9 0.11 3.6E-06 56.1 8.0 24 196-219 366-389 (578)
245 3qf4_A ABC transporter, ATP-bi 93.9 0.26 8.8E-06 53.1 11.1 24 196-219 368-391 (587)
246 2pt5_A Shikimate kinase, SK; a 93.9 0.031 1.1E-06 49.3 3.2 21 199-219 2-22 (168)
247 1zd8_A GTP:AMP phosphotransfer 93.9 0.031 1.1E-06 52.2 3.3 24 196-219 6-29 (227)
248 4e22_A Cytidylate kinase; P-lo 93.8 0.035 1.2E-06 52.9 3.6 23 197-219 27-49 (252)
249 1zak_A Adenylate kinase; ATP:A 93.8 0.032 1.1E-06 52.0 3.2 24 196-219 4-27 (222)
250 2yl4_A ATP-binding cassette SU 93.8 0.16 5.4E-06 55.0 9.1 25 196-220 369-393 (595)
251 2pbr_A DTMP kinase, thymidylat 93.8 0.033 1.1E-06 50.4 3.2 21 199-219 2-22 (195)
252 2f6r_A COA synthase, bifunctio 93.8 0.035 1.2E-06 53.8 3.5 23 196-218 74-96 (281)
253 2v54_A DTMP kinase, thymidylat 93.7 0.037 1.3E-06 50.5 3.5 24 197-220 4-27 (204)
254 2ck3_D ATP synthase subunit be 93.7 0.17 5.9E-06 52.1 8.7 45 196-241 152-196 (482)
255 1sq5_A Pantothenate kinase; P- 93.7 0.067 2.3E-06 52.6 5.4 24 196-219 79-102 (308)
256 3fb4_A Adenylate kinase; psych 93.6 0.036 1.2E-06 51.2 3.2 21 199-219 2-22 (216)
257 3bgw_A DNAB-like replicative h 93.6 0.33 1.1E-05 50.3 10.7 41 196-238 196-236 (444)
258 4edh_A DTMP kinase, thymidylat 93.6 0.3 1E-05 45.0 9.3 24 197-220 6-29 (213)
259 2grj_A Dephospho-COA kinase; T 93.5 0.04 1.4E-06 50.0 3.3 25 195-219 10-34 (192)
260 2z0h_A DTMP kinase, thymidylat 93.5 0.038 1.3E-06 50.1 3.2 21 199-219 2-22 (197)
261 3be4_A Adenylate kinase; malar 93.5 0.034 1.2E-06 51.6 2.9 24 196-219 4-27 (217)
262 3fwy_A Light-independent proto 93.5 0.038 1.3E-06 54.4 3.3 41 196-238 47-87 (314)
263 3a8t_A Adenylate isopentenyltr 93.5 0.043 1.5E-06 54.2 3.6 24 197-220 40-63 (339)
264 3lnc_A Guanylate kinase, GMP k 93.5 0.029 9.9E-07 52.6 2.3 23 197-219 27-50 (231)
265 2ffh_A Protein (FFH); SRP54, s 93.5 0.21 7.1E-06 51.2 8.8 24 197-220 98-121 (425)
266 3dl0_A Adenylate kinase; phosp 93.5 0.039 1.3E-06 51.0 3.2 21 199-219 2-22 (216)
267 1m7g_A Adenylylsulfate kinase; 93.4 0.043 1.5E-06 50.6 3.4 25 196-220 24-48 (211)
268 3k1j_A LON protease, ATP-depen 93.4 0.054 1.8E-06 58.8 4.6 43 166-220 41-83 (604)
269 3tif_A Uncharacterized ABC tra 93.4 0.048 1.6E-06 51.3 3.7 23 197-219 31-53 (235)
270 2xxa_A Signal recognition part 93.4 0.24 8.3E-06 51.0 9.3 25 196-220 99-123 (433)
271 1ls1_A Signal recognition part 93.4 0.18 6E-06 49.2 7.8 24 197-220 98-121 (295)
272 2wsm_A Hydrogenase expression/ 93.4 0.048 1.6E-06 50.5 3.6 25 196-220 29-53 (221)
273 1gtv_A TMK, thymidylate kinase 93.4 0.024 8.2E-07 52.3 1.5 21 199-219 2-22 (214)
274 1g41_A Heat shock protein HSLU 93.3 0.042 1.4E-06 56.6 3.3 54 166-219 15-72 (444)
275 1yqt_A RNAse L inhibitor; ATP- 93.3 0.14 4.7E-06 54.5 7.4 137 197-333 312-462 (538)
276 1j8m_F SRP54, signal recogniti 93.2 0.23 7.7E-06 48.4 8.4 38 197-236 98-135 (297)
277 3qf4_B Uncharacterized ABC tra 93.2 0.091 3.1E-06 56.9 6.0 24 196-219 380-403 (598)
278 2ged_A SR-beta, signal recogni 93.2 0.05 1.7E-06 49.1 3.4 25 196-220 47-71 (193)
279 1np6_A Molybdopterin-guanine d 93.2 0.052 1.8E-06 48.4 3.4 25 196-220 5-29 (174)
280 3foz_A TRNA delta(2)-isopenten 93.2 0.053 1.8E-06 52.8 3.6 24 196-219 9-32 (316)
281 2f1r_A Molybdopterin-guanine d 93.2 0.031 1.1E-06 49.7 1.9 23 198-220 3-25 (171)
282 3cmu_A Protein RECA, recombina 93.2 0.14 4.7E-06 62.1 7.9 86 196-304 382-473 (2050)
283 2wjg_A FEOB, ferrous iron tran 93.1 0.063 2.2E-06 48.1 4.0 25 196-220 6-30 (188)
284 3ake_A Cytidylate kinase; CMP 93.1 0.049 1.7E-06 49.8 3.3 21 199-219 4-24 (208)
285 1vht_A Dephospho-COA kinase; s 93.1 0.05 1.7E-06 50.4 3.3 23 197-219 4-26 (218)
286 1ny5_A Transcriptional regulat 93.1 0.29 9.9E-06 49.7 9.3 45 167-219 138-182 (387)
287 3cmw_A Protein RECA, recombina 93.1 0.12 4E-06 61.9 7.1 87 196-305 382-474 (1706)
288 3exa_A TRNA delta(2)-isopenten 93.1 0.05 1.7E-06 53.0 3.3 23 197-219 3-25 (322)
289 2i3b_A HCR-ntpase, human cance 93.1 0.045 1.5E-06 49.6 2.8 23 198-220 2-24 (189)
290 3ld9_A DTMP kinase, thymidylat 93.1 0.27 9.1E-06 45.6 8.2 25 196-220 20-44 (223)
291 3v9p_A DTMP kinase, thymidylat 93.0 0.17 5.9E-06 47.1 6.9 25 196-220 24-48 (227)
292 2j9r_A Thymidine kinase; TK1, 93.0 0.15 5E-06 46.8 6.2 110 196-333 27-138 (214)
293 3r20_A Cytidylate kinase; stru 93.0 0.055 1.9E-06 50.6 3.4 23 197-219 9-31 (233)
294 2qmh_A HPR kinase/phosphorylas 93.0 0.054 1.8E-06 49.0 3.1 24 197-220 34-57 (205)
295 3p32_A Probable GTPase RV1496/ 93.0 0.087 3E-06 53.0 5.1 24 196-219 78-101 (355)
296 1b0u_A Histidine permease; ABC 92.9 0.06 2.1E-06 51.6 3.6 24 196-219 31-54 (262)
297 3t34_A Dynamin-related protein 92.9 0.9 3.1E-05 45.5 12.6 25 196-220 33-57 (360)
298 3nwj_A ATSK2; P loop, shikimat 92.9 0.051 1.8E-06 51.6 3.1 23 197-219 48-70 (250)
299 3d3q_A TRNA delta(2)-isopenten 92.9 0.051 1.7E-06 53.8 3.1 22 198-219 8-29 (340)
300 1tf7_A KAIC; homohexamer, hexa 92.9 0.091 3.1E-06 55.9 5.4 25 196-220 280-304 (525)
301 1a7j_A Phosphoribulokinase; tr 92.9 0.033 1.1E-06 54.3 1.7 24 196-219 4-27 (290)
302 3zvl_A Bifunctional polynucleo 92.9 0.064 2.2E-06 55.2 4.0 26 195-220 256-281 (416)
303 2zej_A Dardarin, leucine-rich 92.9 0.054 1.9E-06 48.5 3.1 22 199-220 4-25 (184)
304 3gfo_A Cobalt import ATP-bindi 92.9 0.085 2.9E-06 50.8 4.6 52 282-333 151-204 (275)
305 3b9q_A Chloroplast SRP recepto 92.8 0.057 1.9E-06 52.9 3.4 24 196-219 99-122 (302)
306 2fz4_A DNA repair protein RAD2 92.8 1.1 3.9E-05 41.7 12.4 36 171-219 95-130 (237)
307 1ak2_A Adenylate kinase isoenz 92.8 0.065 2.2E-06 50.2 3.7 24 196-219 15-38 (233)
308 3j16_B RLI1P; ribosome recycli 92.7 0.35 1.2E-05 52.0 9.7 136 198-333 379-528 (608)
309 4f4c_A Multidrug resistance pr 92.7 0.56 1.9E-05 55.6 12.2 24 196-219 1104-1127(1321)
310 2v9p_A Replication protein E1; 92.7 0.067 2.3E-06 52.3 3.6 24 196-219 125-148 (305)
311 3sr0_A Adenylate kinase; phosp 92.6 0.062 2.1E-06 49.4 3.2 21 199-219 2-22 (206)
312 3dzd_A Transcriptional regulat 92.6 0.29 9.8E-06 49.4 8.4 46 166-219 129-174 (368)
313 3vkw_A Replicase large subunit 92.6 0.47 1.6E-05 48.6 9.9 25 195-219 159-183 (446)
314 3lv8_A DTMP kinase, thymidylat 92.6 0.44 1.5E-05 44.6 9.0 36 197-233 27-62 (236)
315 2j37_W Signal recognition part 92.6 0.43 1.5E-05 50.0 9.9 24 196-219 100-123 (504)
316 1e4v_A Adenylate kinase; trans 92.6 0.062 2.1E-06 49.6 3.1 21 199-219 2-22 (214)
317 3crm_A TRNA delta(2)-isopenten 92.6 0.059 2E-06 53.0 3.1 22 198-219 6-27 (323)
318 2xb4_A Adenylate kinase; ATP-b 92.6 0.063 2.2E-06 50.0 3.2 21 199-219 2-22 (223)
319 3vr4_D V-type sodium ATPase su 92.6 0.14 4.7E-06 52.5 5.8 43 197-241 151-197 (465)
320 3b85_A Phosphate starvation-in 92.5 0.049 1.7E-06 50.1 2.3 23 197-219 22-44 (208)
321 4tmk_A Protein (thymidylate ki 92.5 0.48 1.6E-05 43.6 9.0 23 198-220 4-26 (213)
322 3cmw_A Protein RECA, recombina 92.5 0.16 5.4E-06 60.8 7.1 85 195-302 1429-1519(1706)
323 2eyu_A Twitching motility prot 92.5 0.07 2.4E-06 51.0 3.4 23 197-219 25-47 (261)
324 2wji_A Ferrous iron transport 92.5 0.073 2.5E-06 46.7 3.3 23 198-220 4-26 (165)
325 2zu0_C Probable ATP-dependent 92.4 0.077 2.6E-06 51.0 3.6 23 197-219 46-68 (267)
326 1g6h_A High-affinity branched- 92.4 0.075 2.6E-06 50.7 3.5 23 197-219 33-55 (257)
327 1ltq_A Polynucleotide kinase; 92.4 0.066 2.3E-06 52.3 3.2 22 198-219 3-24 (301)
328 1oix_A RAS-related protein RAB 92.3 0.072 2.4E-06 48.1 3.1 24 197-220 29-52 (191)
329 2d2e_A SUFC protein; ABC-ATPas 92.3 0.079 2.7E-06 50.3 3.5 23 197-219 29-51 (250)
330 4f4c_A Multidrug resistance pr 92.2 0.2 6.8E-06 59.4 7.5 25 196-220 443-467 (1321)
331 4akg_A Glutathione S-transfera 92.2 0.98 3.3E-05 56.8 13.7 22 198-219 1268-1289(2695)
332 1u0j_A DNA replication protein 92.1 0.13 4.4E-06 49.0 4.7 36 176-219 91-126 (267)
333 1svm_A Large T antigen; AAA+ f 92.1 0.083 2.8E-06 53.4 3.6 24 196-219 168-191 (377)
334 1xx6_A Thymidine kinase; NESG, 92.1 0.07 2.4E-06 48.3 2.8 24 197-220 8-31 (191)
335 1svi_A GTP-binding protein YSX 92.1 0.11 3.6E-06 46.9 4.0 25 196-220 22-46 (195)
336 2iw3_A Elongation factor 3A; a 92.1 0.58 2E-05 53.0 10.7 132 197-333 461-605 (986)
337 2og2_A Putative signal recogni 92.1 0.079 2.7E-06 53.1 3.4 24 196-219 156-179 (359)
338 2qi9_C Vitamin B12 import ATP- 92.1 0.087 3E-06 50.0 3.5 23 197-219 26-48 (249)
339 3oaa_A ATP synthase subunit al 92.1 0.45 1.5E-05 49.2 8.9 42 196-241 161-204 (513)
340 1yrb_A ATP(GTP)binding protein 92.0 0.082 2.8E-06 50.4 3.3 24 196-219 13-36 (262)
341 2f9l_A RAB11B, member RAS onco 92.0 0.075 2.6E-06 48.3 2.9 24 197-220 5-28 (199)
342 2lkc_A Translation initiation 92.0 0.13 4.3E-06 45.5 4.4 25 196-220 7-31 (178)
343 4bas_A ADP-ribosylation factor 92.0 0.085 2.9E-06 47.6 3.3 26 195-220 15-40 (199)
344 3pqc_A Probable GTP-binding pr 92.0 0.11 3.8E-06 46.6 4.1 25 196-220 22-46 (195)
345 2vp4_A Deoxynucleoside kinase; 92.0 0.074 2.5E-06 49.8 2.9 24 196-219 19-42 (230)
346 2r9v_A ATP synthase subunit al 91.9 0.33 1.1E-05 50.3 7.7 42 196-241 174-217 (515)
347 2dyk_A GTP-binding protein; GT 91.8 0.092 3.1E-06 45.5 3.2 23 198-220 2-24 (161)
348 2ihy_A ABC transporter, ATP-bi 91.8 0.094 3.2E-06 50.7 3.5 23 197-219 47-69 (279)
349 1q3t_A Cytidylate kinase; nucl 91.8 0.1 3.5E-06 49.0 3.7 25 195-219 14-38 (236)
350 3thx_A DNA mismatch repair pro 91.8 0.31 1.1E-05 55.1 8.1 22 196-217 661-682 (934)
351 4eaq_A DTMP kinase, thymidylat 91.7 0.11 3.9E-06 48.5 3.8 25 196-220 25-49 (229)
352 2nzj_A GTP-binding protein REM 91.7 0.093 3.2E-06 46.2 3.1 24 197-220 4-27 (175)
353 3f9v_A Minichromosome maintena 91.6 0.07 2.4E-06 57.6 2.5 22 199-220 329-350 (595)
354 3vr4_A V-type sodium ATPase ca 91.5 0.41 1.4E-05 50.3 8.0 51 177-240 221-271 (600)
355 3end_A Light-independent proto 91.5 0.17 5.9E-06 49.5 5.1 44 195-240 39-82 (307)
356 4hlc_A DTMP kinase, thymidylat 91.5 0.51 1.7E-05 43.1 7.9 30 198-229 3-32 (205)
357 3q72_A GTP-binding protein RAD 91.5 0.099 3.4E-06 45.6 3.0 22 199-220 4-25 (166)
358 2r8r_A Sensor protein; KDPD, P 91.4 0.17 5.9E-06 46.8 4.6 23 198-220 7-29 (228)
359 3eph_A TRNA isopentenyltransfe 91.4 0.1 3.4E-06 52.8 3.2 22 198-219 3-24 (409)
360 2yhs_A FTSY, cell division pro 91.3 0.11 3.6E-06 54.1 3.4 24 196-219 292-315 (503)
361 2ce2_X GTPase HRAS; signaling 91.3 0.1 3.5E-06 45.2 2.9 22 199-220 5-26 (166)
362 2qe7_A ATP synthase subunit al 91.3 0.32 1.1E-05 50.4 7.0 42 196-241 161-204 (502)
363 3q85_A GTP-binding protein REM 91.3 0.11 3.8E-06 45.4 3.1 21 199-219 4-24 (169)
364 1z2a_A RAS-related protein RAB 91.3 0.11 3.6E-06 45.4 3.0 24 197-220 5-28 (168)
365 3sop_A Neuronal-specific septi 91.2 0.11 3.6E-06 50.1 3.1 21 199-219 4-24 (270)
366 1fzq_A ADP-ribosylation factor 91.2 0.14 4.7E-06 45.7 3.7 25 196-220 15-39 (181)
367 1nrj_B SR-beta, signal recogni 91.2 0.13 4.5E-06 47.3 3.7 25 196-220 11-35 (218)
368 2erx_A GTP-binding protein DI- 91.2 0.11 3.9E-06 45.3 3.1 23 198-220 4-26 (172)
369 3kta_A Chromosome segregation 91.2 0.13 4.4E-06 45.9 3.5 22 198-219 27-48 (182)
370 2gj8_A MNME, tRNA modification 91.2 0.11 3.8E-06 45.9 3.0 23 198-220 5-27 (172)
371 2hxs_A RAB-26, RAS-related pro 91.1 0.13 4.6E-06 45.3 3.5 25 196-220 5-29 (178)
372 2ocp_A DGK, deoxyguanosine kin 91.1 0.12 4E-06 48.7 3.3 23 197-219 2-24 (241)
373 2fn4_A P23, RAS-related protei 91.1 0.13 4.6E-06 45.3 3.5 25 196-220 8-32 (181)
374 3iev_A GTP-binding protein ERA 91.1 0.11 3.6E-06 51.1 3.0 27 194-220 7-33 (308)
375 3gqb_B V-type ATP synthase bet 91.0 0.25 8.5E-06 50.6 5.7 25 196-220 146-170 (464)
376 3cbq_A GTP-binding protein REM 91.0 0.1 3.5E-06 47.2 2.7 24 196-219 22-45 (195)
377 3mfy_A V-type ATP synthase alp 90.8 0.33 1.1E-05 50.8 6.5 42 196-241 226-267 (588)
378 3con_A GTPase NRAS; structural 90.7 0.12 4.2E-06 46.2 3.0 23 198-220 22-44 (190)
379 3tw8_B RAS-related protein RAB 90.7 0.13 4.5E-06 45.4 3.1 25 196-220 8-32 (181)
380 1u8z_A RAS-related protein RAL 90.7 0.13 4.4E-06 44.7 3.0 23 198-220 5-27 (168)
381 1fx0_A ATP synthase alpha chai 90.7 0.3 1E-05 50.6 6.1 42 196-241 162-205 (507)
382 1nij_A Hypothetical protein YJ 90.7 0.11 3.7E-06 51.4 2.6 24 196-219 3-26 (318)
383 1f6b_A SAR1; gtpases, N-termin 90.7 0.12 3.9E-06 47.0 2.7 23 198-220 26-48 (198)
384 2v3c_C SRP54, signal recogniti 90.7 0.096 3.3E-06 54.0 2.3 25 196-220 98-122 (432)
385 2qu8_A Putative nucleolar GTP- 90.6 0.18 6.2E-06 46.8 4.1 25 196-220 28-52 (228)
386 2cxx_A Probable GTP-binding pr 90.6 0.13 4.4E-06 46.0 2.9 22 199-220 3-24 (190)
387 3thx_B DNA mismatch repair pro 90.6 0.73 2.5E-05 52.0 9.5 23 196-218 672-694 (918)
388 1kao_A RAP2A; GTP-binding prot 90.6 0.13 4.6E-06 44.5 2.9 23 198-220 4-26 (167)
389 2ck3_A ATP synthase subunit al 90.6 0.71 2.4E-05 47.9 8.7 46 196-241 161-212 (510)
390 1c1y_A RAS-related protein RAP 90.5 0.14 4.6E-06 44.6 3.0 22 199-220 5-26 (167)
391 3kkq_A RAS-related protein M-R 90.5 0.17 5.7E-06 45.0 3.6 25 196-220 17-41 (183)
392 2www_A Methylmalonic aciduria 90.4 0.15 5E-06 51.1 3.4 24 196-219 73-96 (349)
393 1r8s_A ADP-ribosylation factor 90.4 0.14 4.8E-06 44.4 3.0 21 199-219 2-22 (164)
394 2yyz_A Sugar ABC transporter, 90.4 0.16 5.5E-06 50.8 3.6 23 197-219 29-51 (359)
395 2yv5_A YJEQ protein; hydrolase 90.4 0.22 7.5E-06 48.7 4.6 21 198-218 166-186 (302)
396 2xau_A PRE-mRNA-splicing facto 90.4 0.86 2.9E-05 50.7 9.9 21 198-218 110-130 (773)
397 1ek0_A Protein (GTP-binding pr 90.3 0.14 4.9E-06 44.5 3.0 22 199-220 5-26 (170)
398 3ihw_A Centg3; RAS, centaurin, 90.3 0.14 4.9E-06 45.8 2.9 24 197-220 20-43 (184)
399 2cjw_A GTP-binding protein GEM 90.3 0.14 4.9E-06 46.2 3.0 23 197-219 6-28 (192)
400 2c61_A A-type ATP synthase non 90.3 0.24 8.3E-06 51.0 4.9 46 196-241 151-198 (469)
401 3llu_A RAS-related GTP-binding 90.3 0.17 5.7E-06 45.8 3.4 25 196-220 19-43 (196)
402 1pui_A ENGB, probable GTP-bind 90.3 0.1 3.4E-06 47.7 1.9 25 196-220 25-49 (210)
403 1p5z_B DCK, deoxycytidine kina 90.2 0.093 3.2E-06 50.2 1.7 24 196-219 23-46 (263)
404 1g16_A RAS-related protein SEC 90.2 0.15 5E-06 44.5 2.9 23 198-220 4-26 (170)
405 1ky3_A GTP-binding protein YPT 90.2 0.15 5E-06 45.1 2.9 25 196-220 7-31 (182)
406 1z0j_A RAB-22, RAS-related pro 90.2 0.15 5.1E-06 44.4 2.9 23 198-220 7-29 (170)
407 1wms_A RAB-9, RAB9, RAS-relate 90.1 0.15 5.2E-06 44.9 2.9 25 196-220 6-30 (177)
408 2qm8_A GTPase/ATPase; G protei 90.1 0.17 5.7E-06 50.4 3.5 24 196-219 54-77 (337)
409 1z08_A RAS-related protein RAB 90.1 0.14 4.9E-06 44.6 2.7 24 197-220 6-29 (170)
410 1cp2_A CP2, nitrogenase iron p 90.0 0.27 9.3E-06 46.9 4.9 41 198-240 2-42 (269)
411 3tqf_A HPR(Ser) kinase; transf 90.0 0.16 5.6E-06 44.7 2.8 23 197-219 16-38 (181)
412 1m7b_A RND3/RHOE small GTP-bin 90.0 0.17 5.7E-06 45.2 3.1 25 196-220 6-30 (184)
413 1r2q_A RAS-related protein RAB 89.9 0.16 5.5E-06 44.2 3.0 24 197-220 6-29 (170)
414 3c5c_A RAS-like protein 12; GD 89.9 0.16 5.4E-06 45.5 2.9 24 197-220 21-44 (187)
415 1m2o_B GTP-binding protein SAR 89.9 0.16 5.4E-06 45.7 2.9 24 197-220 23-46 (190)
416 2h92_A Cytidylate kinase; ross 89.9 0.16 5.4E-06 46.9 2.9 22 198-219 4-25 (219)
417 1g8f_A Sulfate adenylyltransfe 89.9 0.22 7.4E-06 52.3 4.2 45 168-220 374-418 (511)
418 1ksh_A ARF-like protein 2; sma 89.8 0.18 6.3E-06 44.9 3.2 26 196-221 17-42 (186)
419 3b6e_A Interferon-induced heli 89.7 0.35 1.2E-05 44.2 5.2 22 198-219 49-70 (216)
420 1tq4_A IIGP1, interferon-induc 89.7 0.14 4.9E-06 52.2 2.7 24 196-219 68-91 (413)
421 2ewv_A Twitching motility prot 89.6 0.18 6.2E-06 50.9 3.3 23 197-219 136-158 (372)
422 2g3y_A GTP-binding protein GEM 89.6 0.18 6.1E-06 46.4 3.1 23 197-219 37-59 (211)
423 1z0f_A RAB14, member RAS oncog 89.6 0.18 6E-06 44.4 3.0 24 197-220 15-38 (179)
424 3t5g_A GTP-binding protein RHE 89.6 0.15 5.2E-06 45.2 2.5 25 196-220 5-29 (181)
425 2h17_A ADP-ribosylation factor 89.6 0.18 6.1E-06 44.8 3.0 24 197-220 21-44 (181)
426 1moz_A ARL1, ADP-ribosylation 89.6 0.14 4.8E-06 45.4 2.3 25 196-220 17-41 (183)
427 2b6h_A ADP-ribosylation factor 89.6 0.18 6E-06 45.5 2.9 24 197-220 29-52 (192)
428 2y8e_A RAB-protein 6, GH09086P 89.6 0.18 6E-06 44.4 2.9 23 198-220 15-37 (179)
429 4dkx_A RAS-related protein RAB 89.5 0.15 5.2E-06 47.1 2.5 22 199-220 15-36 (216)
430 2gza_A Type IV secretion syste 89.5 0.17 5.9E-06 50.9 3.1 24 197-220 175-198 (361)
431 3bc1_A RAS-related protein RAB 89.5 0.18 6.1E-06 45.1 3.0 24 197-220 11-34 (195)
432 3g5u_A MCG1178, multidrug resi 89.5 0.37 1.3E-05 57.0 6.3 25 196-220 415-439 (1284)
433 1zbd_A Rabphilin-3A; G protein 89.5 0.19 6.3E-06 45.6 3.1 24 197-220 8-31 (203)
434 2iwr_A Centaurin gamma 1; ANK 89.5 0.14 4.7E-06 45.3 2.1 23 198-220 8-30 (178)
435 2p67_A LAO/AO transport system 89.5 0.28 9.5E-06 48.9 4.6 24 196-219 55-78 (341)
436 4dsu_A GTPase KRAS, isoform 2B 89.5 0.18 6.2E-06 44.9 2.9 23 198-220 5-27 (189)
437 2il1_A RAB12; G-protein, GDP, 89.5 0.19 6.5E-06 45.2 3.1 23 198-220 27-49 (192)
438 4dhe_A Probable GTP-binding pr 89.5 0.16 5.6E-06 46.8 2.7 25 196-220 28-52 (223)
439 1upt_A ARL1, ADP-ribosylation 89.5 0.24 8.2E-06 43.2 3.7 24 197-220 7-30 (171)
440 3cr8_A Sulfate adenylyltranfer 89.5 0.22 7.5E-06 53.0 4.0 24 196-219 368-391 (552)
441 2fh5_B SR-beta, signal recogni 89.4 0.2 6.8E-06 45.9 3.3 25 196-220 6-30 (214)
442 2bme_A RAB4A, RAS-related prot 89.4 0.18 6.3E-06 44.8 2.9 24 197-220 10-33 (186)
443 2q3h_A RAS homolog gene family 89.3 0.2 6.7E-06 45.3 3.1 24 197-220 20-43 (201)
444 2oil_A CATX-8, RAS-related pro 89.3 0.19 6.5E-06 45.1 2.9 24 197-220 25-48 (193)
445 2a9k_A RAS-related protein RAL 89.3 0.19 6.5E-06 44.6 3.0 24 197-220 18-41 (187)
446 3g5u_A MCG1178, multidrug resi 89.3 1 3.4E-05 53.3 9.8 25 196-220 1058-1082(1284)
447 2afh_E Nitrogenase iron protei 89.3 0.34 1.2E-05 46.9 5.0 41 198-240 3-43 (289)
448 3bwd_D RAC-like GTP-binding pr 89.3 0.19 6.6E-06 44.4 3.0 24 197-220 8-31 (182)
449 1mh1_A RAC1; GTP-binding, GTPa 89.3 0.19 6.6E-06 44.5 3.0 24 197-220 5-28 (186)
450 3t1o_A Gliding protein MGLA; G 89.2 0.19 6.6E-06 45.0 3.0 23 197-219 14-36 (198)
451 1u0l_A Probable GTPase ENGC; p 89.2 0.31 1.1E-05 47.6 4.6 23 198-220 170-192 (301)
452 1lw7_A Transcriptional regulat 89.2 0.18 6.2E-06 50.8 3.0 23 197-219 170-192 (365)
453 2o52_A RAS-related protein RAB 89.2 0.2 6.9E-06 45.4 3.0 24 197-220 25-48 (200)
454 3lxx_A GTPase IMAP family memb 89.2 0.21 7.1E-06 46.9 3.2 25 196-220 28-52 (239)
455 2gf0_A GTP-binding protein DI- 89.1 0.24 8.3E-06 44.5 3.6 25 196-220 7-31 (199)
456 2efe_B Small GTP-binding prote 89.1 0.19 6.5E-06 44.4 2.7 24 197-220 12-35 (181)
457 2qnr_A Septin-2, protein NEDD5 89.1 0.17 5.8E-06 49.5 2.6 21 199-219 20-40 (301)
458 2atv_A RERG, RAS-like estrogen 89.1 0.2 6.8E-06 45.2 2.9 24 197-220 28-51 (196)
459 2bov_A RAla, RAS-related prote 89.0 0.24 8.1E-06 44.9 3.4 25 196-220 13-37 (206)
460 2ew1_A RAS-related protein RAB 89.0 0.2 6.9E-06 45.6 2.9 24 197-220 26-49 (201)
461 2g6b_A RAS-related protein RAB 89.0 0.21 7.1E-06 44.1 3.0 24 197-220 10-33 (180)
462 2aka_B Dynamin-1; fusion prote 89.0 0.49 1.7E-05 45.9 5.9 25 196-220 25-49 (299)
463 2j1l_A RHO-related GTP-binding 89.0 0.21 7.1E-06 45.9 3.0 24 197-220 34-57 (214)
464 1gwn_A RHO-related GTP-binding 89.0 0.2 6.9E-06 45.7 2.9 24 197-220 28-51 (205)
465 3dz8_A RAS-related protein RAB 88.9 0.21 7.1E-06 44.8 2.9 24 197-220 23-46 (191)
466 1vg8_A RAS-related protein RAB 88.9 0.21 7.2E-06 45.3 2.9 25 196-220 7-31 (207)
467 1zd9_A ADP-ribosylation factor 88.8 0.22 7.4E-06 44.6 3.0 24 197-220 22-45 (188)
468 1m8p_A Sulfate adenylyltransfe 88.8 0.26 8.9E-06 52.7 4.0 25 196-220 395-419 (573)
469 3oes_A GTPase rhebl1; small GT 88.8 0.21 7.3E-06 45.2 2.9 25 196-220 23-47 (201)
470 3clv_A RAB5 protein, putative; 88.7 0.22 7.4E-06 44.9 2.9 24 197-220 7-30 (208)
471 1zj6_A ADP-ribosylation factor 88.7 0.28 9.5E-06 43.8 3.6 25 196-220 15-39 (187)
472 2fg5_A RAB-22B, RAS-related pr 88.7 0.22 7.4E-06 44.8 2.9 24 197-220 23-46 (192)
473 2gf9_A RAS-related protein RAB 88.7 0.22 7.7E-06 44.5 3.0 24 197-220 22-45 (189)
474 2orv_A Thymidine kinase; TP4A 88.7 1.1 3.9E-05 41.3 7.7 106 197-333 19-126 (234)
475 1ypw_A Transitional endoplasmi 88.6 0.19 6.4E-06 56.4 2.9 55 165-219 476-533 (806)
476 3reg_A RHO-like small GTPase; 88.6 0.23 7.7E-06 44.7 3.0 24 197-220 23-46 (194)
477 2a5j_A RAS-related protein RAB 88.6 0.23 7.8E-06 44.5 2.9 24 197-220 21-44 (191)
478 2h57_A ADP-ribosylation factor 88.6 0.19 6.6E-06 45.0 2.4 24 197-220 21-44 (190)
479 2axn_A 6-phosphofructo-2-kinas 88.5 0.24 8.2E-06 52.4 3.5 24 196-219 34-57 (520)
480 1ega_A Protein (GTP-binding pr 88.5 0.23 8E-06 48.5 3.2 25 196-220 7-31 (301)
481 1z06_A RAS-related protein RAB 88.5 0.24 8.3E-06 44.2 3.1 24 197-220 20-43 (189)
482 3tkl_A RAS-related protein RAB 88.5 0.23 7.9E-06 44.5 3.0 24 197-220 16-39 (196)
483 3fdi_A Uncharacterized protein 88.5 0.21 7.2E-06 45.6 2.6 22 198-219 7-28 (201)
484 3gmt_A Adenylate kinase; ssgci 88.5 0.24 8.1E-06 46.1 2.9 24 196-219 7-30 (230)
485 2xtp_A GTPase IMAP family memb 88.4 0.26 9E-06 46.8 3.4 25 196-220 21-45 (260)
486 1c9k_A COBU, adenosylcobinamid 88.3 0.24 8.3E-06 44.1 2.8 21 200-220 2-22 (180)
487 2p5s_A RAS and EF-hand domain 88.3 0.24 8.2E-06 44.8 2.9 25 196-220 27-51 (199)
488 3cph_A RAS-related protein SEC 88.3 0.26 8.9E-06 44.9 3.2 24 197-220 20-43 (213)
489 2pt7_A CAG-ALFA; ATPase, prote 88.3 0.2 6.7E-06 49.7 2.5 22 198-219 172-193 (330)
490 3k53_A Ferrous iron transport 88.3 0.26 9E-06 47.2 3.3 24 197-220 3-26 (271)
491 2fu5_C RAS-related protein RAB 88.2 0.16 5.4E-06 45.2 1.5 24 197-220 8-31 (183)
492 2rcn_A Probable GTPase ENGC; Y 88.2 0.26 8.9E-06 49.2 3.3 23 198-220 216-238 (358)
493 3io3_A DEHA2D07832P; chaperone 88.2 0.6 2E-05 46.5 5.9 39 196-236 17-57 (348)
494 1p9r_A General secretion pathw 88.2 0.45 1.5E-05 48.7 5.1 23 197-219 167-189 (418)
495 1x6v_B Bifunctional 3'-phospho 88.1 0.28 9.7E-06 52.7 3.7 24 196-219 51-74 (630)
496 3ch4_B Pmkase, phosphomevalona 88.1 0.35 1.2E-05 43.9 3.8 24 196-219 10-33 (202)
497 3iqw_A Tail-anchored protein t 88.1 0.62 2.1E-05 46.1 5.9 41 196-238 15-55 (334)
498 2bcg_Y Protein YP2, GTP-bindin 88.1 0.25 8.6E-06 44.9 2.9 24 197-220 8-31 (206)
499 1x3s_A RAS-related protein RAB 88.0 0.26 8.9E-06 44.1 3.0 23 198-220 16-38 (195)
500 1f2t_A RAD50 ABC-ATPase; DNA d 88.0 0.32 1.1E-05 41.9 3.3 23 197-219 23-45 (149)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.5e-49 Score=429.50 Aligned_cols=312 Identities=20% Similarity=0.262 Sum_probs=248.2
Q ss_pred ccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC--ChhhhccCCeeEEEEecCCC--chhhh
Q 041007 169 HGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD--DSDVKANFDKRIWVSASYPR--DEIRV 244 (597)
Q Consensus 169 vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~ 244 (597)
|||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +.
T Consensus 131 ~GR~~~~~~l~~~L~~~~-------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~--- 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST--- 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH---
T ss_pred CCchHHHHHHHHHHhccc-------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH---
Confidence 599999999999997542 13579999999999999999999997 56889999999999999875 55
Q ss_pred hhhhhhhcccchHHHHHHHHHHhccCCCC-------chhhHHHHHHHHHHHhcCc-eEEEEEecccCCCCcchHHHHHHh
Q 041007 245 ARDEISVARDRDEIRVAKAILESLKGSVS-------SQVEMETVLQYINEFVQGK-KVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~-------~~~~~~~~~~~l~~~L~~k-r~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
..++..|+.+++.... ...+.+.+...+++.|.++ ||||||||||+.+.. .|..
T Consensus 201 -------------~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~---- 262 (549)
T 2a5y_B 201 -------------FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ---- 262 (549)
T ss_dssp -------------HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH----
T ss_pred -------------HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc----
Confidence 8889999999876521 1234567788999999996 999999999975511 2321
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-----eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHH
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-----EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRR 391 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~ 391 (597)
.+||+||||||+. .++..+ .|+|++|+.++|++||.+.++... .++.+.+++.+
T Consensus 263 ----~~gs~ilvTTR~~--------------~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~ 321 (549)
T 2a5y_B 263 ----ELRLRCLVTTRDV--------------EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNK 321 (549)
T ss_dssp ----HTTCEEEEEESBG--------------GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHH
T ss_pred ----cCCCEEEEEcCCH--------------HHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHH
Confidence 2799999999998 554433 299999999999999999987542 24677889999
Q ss_pred HHHhcCCchHHHHHHHhhhccCCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHHHH-------
Q 041007 392 VVGKCKGLPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKCFL------- 464 (597)
Q Consensus 392 I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~------- 464 (597)
|+++|+|+||||+++|+.++.+ + .+|...+.+..+.. ...++..+|.+||++||+++|.||+
T Consensus 322 I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~---------~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er 390 (549)
T 2a5y_B 322 TIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESR---------GLVGVECITPYSYKSLAMALQRCVEVLSDEDR 390 (549)
T ss_dssp HHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHH---------CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHH
T ss_pred HHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhcc---------cHHHHHHHHhcccccccHHHHHHHhccchhhh
Confidence 9999999999999999999765 3 23434444332221 1456899999999999999999999
Q ss_pred ----HhhcCCCCcccChhHHHHHHHHc--CCcccCC-CCCHHHHHHHHHHHHhhCCCcccccccCCCCeeeEEEeChHHH
Q 041007 465 ----YCSIFPKNYEIEKDRLIKLWMAQ--GYLKSQE-SKDMELVGEEYFGNLSSRSLFQDFQKSEFDGRIIRCQMHPIVH 537 (597)
Q Consensus 465 ----~ls~Fp~~~~i~~~~Li~~W~ae--g~i~~~~-~~~~e~~~~~~l~~Lv~rsli~~~~~~~~~~~~~~~~mH~lv~ 537 (597)
|||+||+++.|+ +++|+|+ ||+.... ..+.+++++ ||++|+++|||++...+ ...+|+|||+||
T Consensus 391 ~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~----~~~~~~mHdlv~ 461 (549)
T 2a5y_B 391 SALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM----PVLTFKIDHIIH 461 (549)
T ss_dssp HHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS----SSCEEECCHHHH
T ss_pred hHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC----CceEEEeChHHH
Confidence 999999999999 8999999 9998755 667788887 99999999999987543 134699999999
Q ss_pred HHHHHhhccccE
Q 041007 538 EFAQLLSKSHNF 549 (597)
Q Consensus 538 ~~a~~~~~~~~~ 549 (597)
+||++++.++++
T Consensus 462 ~~a~~~~~~~~~ 473 (549)
T 2a5y_B 462 MFLKHVVDAQTI 473 (549)
T ss_dssp HHHHTTSCTHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-39 Score=387.72 Aligned_cols=318 Identities=20% Similarity=0.238 Sum_probs=242.2
Q ss_pred ccCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhh-hccC-CeeEEEEecCCC
Q 041007 162 VIDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDV-KANF-DKRIWVSASYPR 239 (597)
Q Consensus 162 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~~~~~~ 239 (597)
+..+..||||++++++|.++|.... ...++|+|+||||+||||||++++++.+. ..+| +.++|++++...
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~--------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN--------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT--------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc--------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 3456779999999999999997543 25789999999999999999999997543 4445 567799998754
Q ss_pred chhhhhhhhhhhcccchHHHHHHHHHHhccCCC----CchhhHHHHHHHHHHHhcCc--eEEEEEecccCCCCcchHHHH
Q 041007 240 DEIRVARDEISVARDRDEIRVAKAILESLKGSV----SSQVEMETVLQYINEFVQGK--KVLLVLDDLWWNAYPRYWEQL 313 (597)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~----~~~~~~~~~~~~l~~~L~~k--r~LLVLDdv~~~~~~~~~~~l 313 (597)
.. .....+..++..+.... ....+.+.+...++..+.++ |+||||||+|+.. .|
T Consensus 192 ~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---~~--- 251 (1249)
T 3sfz_A 192 KS--------------GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---VL--- 251 (1249)
T ss_dssp HH--------------HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---HH---
T ss_pred ch--------------HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---HH---
Confidence 32 11444556666665432 22456788889999999877 9999999998543 22
Q ss_pred HHhhcCCCCCcEEEEEccCCCCCCCcccccccccCcccc-----ceeecCC-CChHHHHHHHHHHhccCCCCCCccchHH
Q 041007 314 MYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-----MEIGLGE-LSEEECRSLFRQIAFHGRSSDYREKFEP 387 (597)
Q Consensus 314 ~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~-Ls~~es~~Lf~~~~~~~~~~~~~~~~~~ 387 (597)
....+|++||||||++ .++.. ..+++.+ |+.+++++||...++.. .+.+.+
T Consensus 252 ----~~~~~~~~ilvTtR~~--------------~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~ 308 (1249)
T 3sfz_A 252 ----KAFDNQCQILLTTRDK--------------SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPA 308 (1249)
T ss_dssp ----TTTCSSCEEEEEESST--------------TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCT
T ss_pred ----HhhcCCCEEEEEcCCH--------------HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcH
Confidence 2336899999999998 44422 2288886 99999999999988432 233456
Q ss_pred HHHHHHHhcCCchHHHHHHHhhhccCCCHHHHHHHHhhhcccCChhhhhh-cCCCCCcccchhccccCCChhHhHHHHHh
Q 041007 388 IGRRVVGKCKGLPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICKR-AGVGYECLSPLLLSYFDLSPALKKCFLYC 466 (597)
Q Consensus 388 ~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~sy~~L~~~~k~cf~~l 466 (597)
.+.+|+++|+|+||||+++|++|+.++ ..|...+..+........... ......+..+|.+||+.||+++|.||+||
T Consensus 309 ~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l 386 (1249)
T 3sfz_A 309 EAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDL 386 (1249)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 789999999999999999999998765 346666654433221111000 00013578899999999999999999999
Q ss_pred hcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhCCCcccccccCCCCeeeEEEeChHHHHHHHHhhcc
Q 041007 467 SIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQKSEFDGRIIRCQMHPIVHEFAQLLSKS 546 (597)
Q Consensus 467 s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~~~~~~~~~~~~mH~lv~~~a~~~~~~ 546 (597)
|+||+++.|+++.++.+|.++ ++.++.+|++|+++|||+....+ +..+|+||++||+|++..+.+
T Consensus 387 ~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~~----~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 387 SILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRNG----KSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp GGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEESS----SSEEEECCHHHHHHHHHHTGG
T ss_pred CccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecCC----CceEEEecHHHHHHHHhhhhH
Confidence 999999999999999999664 35789999999999999865422 245799999999999999776
Q ss_pred c
Q 041007 547 H 547 (597)
Q Consensus 547 ~ 547 (597)
+
T Consensus 452 ~ 452 (1249)
T 3sfz_A 452 Q 452 (1249)
T ss_dssp G
T ss_pred H
Confidence 5
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.2e-39 Score=359.22 Aligned_cols=280 Identities=20% Similarity=0.199 Sum_probs=218.6
Q ss_pred cccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCe-eEEEEecCCCchhhhhh
Q 041007 168 FHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDK-RIWVSASYPRDEIRVAR 246 (597)
Q Consensus 168 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~ 246 (597)
.|||+.++++|.++|.... ..++|+|+||||+||||||++++++.+++.+|+. ++|+++++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d---------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~----- 195 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR---------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP----- 195 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC---------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH-----
T ss_pred CCCcHHHHHHHHHHHhccC---------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH-----
Confidence 4999999999999998432 3689999999999999999999987678899987 999999988776
Q ss_pred hhhhhcccchHHHHHHHHHHhccC---C----C----CchhhHHHHHHHHHHHh---cCceEEEEEecccCCCCcchHHH
Q 041007 247 DEISVARDRDEIRVAKAILESLKG---S----V----SSQVEMETVLQYINEFV---QGKKVLLVLDDLWWNAYPRYWEQ 312 (597)
Q Consensus 247 ~~~~~~~~~~~~~~~~~il~~l~~---~----~----~~~~~~~~~~~~l~~~L---~~kr~LLVLDdv~~~~~~~~~~~ 312 (597)
..++..++..++. . . ....+.+.+...+++.| .++|+||||||+|+.. .|+.
T Consensus 196 -----------~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~e---qLe~ 261 (1221)
T 1vt4_I 196 -----------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK---AWNA 261 (1221)
T ss_dssp -----------HHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHH---HHHH
T ss_pred -----------HHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHH---HHHh
Confidence 5555555553221 1 0 11234566677777766 6899999999998744 5654
Q ss_pred HHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc----eeecC------CCChHHHHHHHHHHhccCCCCCCc
Q 041007 313 LMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM----EIGLG------ELSEEECRSLFRQIAFHGRSSDYR 382 (597)
Q Consensus 313 l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~----~~~l~------~Ls~~es~~Lf~~~~~~~~~~~~~ 382 (597)
+ + +||+||||||+. .++..+ .+.++ +|+.+||++||.+.... . .
T Consensus 262 f----~---pGSRILVTTRd~--------------~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~-~----~ 315 (1221)
T 1vt4_I 262 F----N---LSCKILLTTRFK--------------QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-R----P 315 (1221)
T ss_dssp H----H---SSCCEEEECSCS--------------HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCC-C----T
T ss_pred h----C---CCeEEEEeccCh--------------HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCC-C----H
Confidence 3 2 789999999998 544211 25566 99999999999998421 1 1
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHhhhccCC-CHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhH-h
Q 041007 383 EKFEPIGRRVVGKCKGLPFAVKILGSLLRFKT-SIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPAL-K 460 (597)
Q Consensus 383 ~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~-~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k 460 (597)
.++..+| |+|+||||+++|+.|+.+. +.+.|... . ...+..+|.+||+.||+++ |
T Consensus 316 ---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~-------~~~I~aaLelSYd~Lp~eelK 372 (1221)
T 1vt4_I 316 ---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------N-------CDKLTTIIESSLNVLEPAEYR 372 (1221)
T ss_dssp ---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------S-------CHHHHHHHHHHHHHSCTTHHH
T ss_pred ---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------C-------hhHHHHHHHHHHHhCCHHHHH
Confidence 2233344 9999999999999998774 67788652 0 3457789999999999999 9
Q ss_pred HHHHHhhcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhCCCcccccccCCCCeeeEEEeChHHHHHH
Q 041007 461 KCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQKSEFDGRIIRCQMHPIVHEFA 540 (597)
Q Consensus 461 ~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~~~~~~~~~~~~mH~lv~~~a 540 (597)
.||+|||+||+++.|+.+.++.+|+++| ++.++.+|++|+++|||+... . ..+|+|||++++++
T Consensus 373 ~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~--~----~~rYrMHDLllELr 436 (1221)
T 1vt4_I 373 KMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQP--K----ESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCS--S----SSEEBCCCHHHHHH
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeC--C----CCEEEehHHHHHHh
Confidence 9999999999999999999999999987 136889999999999998731 1 23599999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.2e-37 Score=338.31 Aligned_cols=313 Identities=20% Similarity=0.248 Sum_probs=228.8
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhh-hccCC-eeEEEEecCCCch
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDV-KANFD-KRIWVSASYPRDE 241 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~~~~~~~~ 241 (597)
.+..||||+.++++|.++|.... +..++|+|+||||+||||||.+++++.++ +.+|+ .++|++++.....
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK--------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST--------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHH
T ss_pred CCCeecccHHHHHHHHHHHhccc--------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchH
Confidence 45679999999999999997532 25689999999999999999999997665 78894 7999998765321
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccCC----CCchhhHHHHHHHHHHHhcC--ceEEEEEecccCCCCcchHHHHHH
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKGS----VSSQVEMETVLQYINEFVQG--KKVLLVLDDLWWNAYPRYWEQLMY 315 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~----~~~~~~~~~~~~~l~~~L~~--kr~LLVLDdv~~~~~~~~~~~l~~ 315 (597)
.....+..++..++.. .....+.+.+...+...+.+ +++||||||+|+.. . +
T Consensus 194 --------------~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~---~---l-- 251 (591)
T 1z6t_A 194 --------------GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW---V---L-- 251 (591)
T ss_dssp --------------HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---H---H--
T ss_pred --------------HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---H---H--
Confidence 0022223334444421 12234566777788888875 78999999997532 2 2
Q ss_pred hhcCCCCCcEEEEEccCCCCCCCcccccccccCcccc---ceeec---CCCChHHHHHHHHHHhccCCCCCCccchHHHH
Q 041007 316 SLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM---MEIGL---GELSEEECRSLFRQIAFHGRSSDYREKFEPIG 389 (597)
Q Consensus 316 ~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~---~~~~l---~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~ 389 (597)
....++++||||||+. .+... ..+++ .+|+.+|+++||...++.. .....+.+
T Consensus 252 --~~l~~~~~ilvTsR~~--------------~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~ 310 (591)
T 1z6t_A 252 --KAFDSQCQILLTTRDK--------------SVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQA 310 (591)
T ss_dssp --HTTCSSCEEEEEESCG--------------GGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHH
T ss_pred --HHhcCCCeEEEECCCc--------------HHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHH
Confidence 1236789999999988 33222 11333 6999999999999988531 12234568
Q ss_pred HHHHHhcCCchHHHHHHHhhhccCCCHHHHHHHHhhhcccCChhhhh-hcCCCCCcccchhccccCCChhHhHHHHHhhc
Q 041007 390 RRVVGKCKGLPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICK-RAGVGYECLSPLLLSYFDLSPALKKCFLYCSI 468 (597)
Q Consensus 390 ~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~sy~~L~~~~k~cf~~ls~ 468 (597)
.+|+++|+|+||||+++|+.++... ..|...+..+.......... .......+..++.+||+.||++.|.||++||+
T Consensus 311 ~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~ 388 (591)
T 1z6t_A 311 HSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSI 388 (591)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccc
Confidence 9999999999999999999998764 35776666543322111000 00112357788999999999999999999999
Q ss_pred CCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhCCCcccccccCCCCeeeEEEeChHHHHHHHHhh
Q 041007 469 FPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQKSEFDGRIIRCQMHPIVHEFAQLLS 544 (597)
Q Consensus 469 Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~~~~~~~~~~~~mH~lv~~~a~~~~ 544 (597)
||+++.|+.+.++.+|.++ .+.+..++++|+++|||+....+ ...+|+||+++|+|++...
T Consensus 389 f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~~----~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 389 LQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRNG----KSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp CCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEET----TEEEEECCHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecCC----CccEEEEcHHHHHHHHhhh
Confidence 9999999999999999653 24678899999999999854322 1457999999999999873
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.75 E-value=3.3e-17 Score=167.72 Aligned_cols=311 Identities=12% Similarity=0.115 Sum_probs=177.1
Q ss_pred ccCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 162 VIDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 162 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
...+..|+||+.++++|.+++.. .+++.|+|++|+|||||++++++. . . .+|+++......
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~------------~~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~ 68 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN------------YPLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAE 68 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH------------CSEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHT
T ss_pred CCChHhcCChHHHHHHHHHHHhc------------CCeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeeccccc
Confidence 44567899999999999999872 169999999999999999999873 2 1 677765432100
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccC-----------------CCC-chhhHHHHHHHHHHHhcC-ceEEEEEeccc
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKG-----------------SVS-SQVEMETVLQYINEFVQG-KKVLLVLDDLW 302 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~-----------------~~~-~~~~~~~~~~~l~~~L~~-kr~LLVLDdv~ 302 (597)
....+...++..+...+.. ..+ ...+...+...+.+.... ++++|||||++
T Consensus 69 ----------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~ 138 (350)
T 2qen_A 69 ----------RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQ 138 (350)
T ss_dssp ----------TTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGG
T ss_pred ----------ccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHH
Confidence 0000002333333333321 000 123455666666666543 38999999998
Q ss_pred CCCC------cchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCcc-cc-ceeecCCCChHHHHHHHHHHhc
Q 041007 303 WNAY------PRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGT-NM-MEIGLGELSEEECRSLFRQIAF 374 (597)
Q Consensus 303 ~~~~------~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~Ls~~es~~Lf~~~~~ 374 (597)
+.+. ...+..+...+.. ..+..+|+|++................... .. ..+.+.||+.+|+.+++.....
T Consensus 139 ~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 139 YLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp GGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH
Confidence 8652 1223333333222 257888998765310000000000000111 11 2499999999999999987653
Q ss_pred cCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhhccCCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccC
Q 041007 375 HGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGSLLRFKTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFD 454 (597)
Q Consensus 375 ~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~ 454 (597)
..+.. -..+.+..|++.|+|+|+++..++..+....+...+...+.. .. ...+.-.+..
T Consensus 218 ~~~~~----~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~--------------~~~~~~~l~~ 276 (350)
T 2qen_A 218 EVNLD----VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE---VA--------------KGLIMGELEE 276 (350)
T ss_dssp TTTCC----CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH---HH--------------HHHHHHHHHH
T ss_pred HcCCC----CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH---HH--------------HHHHHHHHHH
Confidence 22111 114567899999999999999998764322222222211110 00 0001111112
Q ss_pred C---ChhHhHHHHHhhcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhCCCcccccccCCCCeeeEEE
Q 041007 455 L---SPALKKCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQKSEFDGRIIRCQ 531 (597)
Q Consensus 455 L---~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~~~~~~~~~~~~ 531 (597)
+ ++..+..+..+|. .. ++...+.....+. . .+.+ ......+++.|++.+||.... + .|.
T Consensus 277 l~~~~~~~~~~l~~la~--g~--~~~~~l~~~~~~~-~----~~~~-~~~~~~~l~~L~~~gli~~~~-----~---~y~ 338 (350)
T 2qen_A 277 LRRRSPRYVDILRAIAL--GY--NRWSLIRDYLAVK-G----TKIP-EPRLYALLENLKKMNWIVEED-----N---TYK 338 (350)
T ss_dssp HHHHCHHHHHHHHHHHT--TC--CSHHHHHHHHHHT-T----CCCC-HHHHHHHHHHHHHTTSEEEET-----T---EEE
T ss_pred HHhCChhHHHHHHHHHh--CC--CCHHHHHHHHHHH-h----CCCC-HHHHHHHHHHHHhCCCEEecC-----C---EEE
Confidence 2 7889999999998 22 3445555443221 1 0112 245678999999999997641 1 255
Q ss_pred e-ChHHHHHHH
Q 041007 532 M-HPIVHEFAQ 541 (597)
Q Consensus 532 m-H~lv~~~a~ 541 (597)
+ |++++++.+
T Consensus 339 ~~~p~~~~~~~ 349 (350)
T 2qen_A 339 IADPVVATVLR 349 (350)
T ss_dssp ESSHHHHHHHT
T ss_pred EecHHHHHHHc
Confidence 5 788888764
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.74 E-value=3.7e-17 Score=171.43 Aligned_cols=310 Identities=13% Similarity=0.038 Sum_probs=180.0
Q ss_pred CCCccccchhhHHHHHHHh-hCCCCCCcCCCCCCccEEEE--EcCCCCcHHHHHHHHhCChhhhc-----cCC-eeEEEE
Q 041007 164 DPLEFHGRNAEKQKILQLL-KGESSDEESGSKPTLPVIWI--LGNEGIGKTALARQVFDDSDVKA-----NFD-KRIWVS 234 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~~-----~F~-~~~wv~ 234 (597)
.+..|+||+.++++|..+| ...... .....+.+.| +|++|+|||+|++.+++. ... .|. .++|++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~----~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG----AGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS----SCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC----CCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEE
Confidence 3467999999999999998 532110 0013457777 999999999999999984 332 122 357777
Q ss_pred ecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc-hhhHHHHHHHHHHHhc--CceEEEEEecccCCCC-----
Q 041007 235 ASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS-QVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAY----- 306 (597)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~----- 306 (597)
+...... ..++..++..++...+. ..+...+...+.+.+. +++++|||||+|+...
T Consensus 94 ~~~~~~~----------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~ 157 (412)
T 1w5s_A 94 AFNAPNL----------------YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA 157 (412)
T ss_dssp GGGCCSH----------------HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC
T ss_pred CCCCCCH----------------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc
Confidence 6555444 77888888888654322 2234455566666654 6799999999987542
Q ss_pred cchHHHHHHhhcCC---C--CCcEEEEEccCCCCCCCccc---ccccccCccccceeecCCCChHHHHHHHHHHhccCCC
Q 041007 307 PRYWEQLMYSLKSG---S--EGSRILVTRSGGKNGTNMTE---IGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGRS 378 (597)
Q Consensus 307 ~~~~~~l~~~l~~~---~--~gs~IIvTtR~~~~~~~~~~---~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~~ 378 (597)
...+..+...+... . .+..+|+||+..... .... ..... .. .. .+.+.||+.++++++|...+.....
T Consensus 158 ~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~-~~l~~~~~~~~~-~~-~~-~i~l~~l~~~e~~~ll~~~~~~~~~ 233 (412)
T 1w5s_A 158 AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRAL-SYMREKIPQVES-QI-GF-KLHLPAYKSRELYTILEQRAELGLR 233 (412)
T ss_dssp HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHH-HHHHHHCHHHHT-TC-SE-EEECCCCCHHHHHHHHHHHHHHHBC
T ss_pred hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHH-HHHhhhcchhhh-hc-CC-eeeeCCCCHHHHHHHHHHHHHhcCC
Confidence 13344444443322 2 445578788654100 0000 00000 01 11 1899999999999999876431111
Q ss_pred CCCccchHHHHHHHHHhcC------CchHHHHHHHhhh---c---cC--CCHHHHHHHHhhhcccCChhhhhhcCCCCCc
Q 041007 379 SDYREKFEPIGRRVVGKCK------GLPFAVKILGSLL---R---FK--TSIKEWQSVLDSEIWNLDSEICKRAGVGYEC 444 (597)
Q Consensus 379 ~~~~~~~~~~~~~I~~~~~------GlPLai~~~~~~l---~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~ 444 (597)
. ..-..+....|++.|+ |+|..+..+.... . .. -+.+.+...+.... .
T Consensus 234 ~--~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~---------------~- 295 (412)
T 1w5s_A 234 D--TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE---------------A- 295 (412)
T ss_dssp T--TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------
T ss_pred C--CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh---------------c-
Confidence 0 1112456788999999 9997655544321 1 11 12333333332210 0
Q ss_pred ccchhccccCCChhHhHHHHHhhcCC--CCcccChhHHHHHHHHcC--CcccCCCCCHHHHHHHHHHHHhhCCCccccc
Q 041007 445 LSPLLLSYFDLSPALKKCFLYCSIFP--KNYEIEKDRLIKLWMAQG--YLKSQESKDMELVGEEYFGNLSSRSLFQDFQ 519 (597)
Q Consensus 445 ~~~l~~sy~~L~~~~k~cf~~ls~Fp--~~~~i~~~~Li~~W~aeg--~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~ 519 (597)
...+.-++..||++.+.++..++.+. .+..++...+...+.... ... .+.. .......+++.|+..+||....
T Consensus 296 ~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 296 ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYN-VKPR-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp ----CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC-CCCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHHHHHhCCCEEeec
Confidence 22345577899999999999888754 233466655555442210 000 0111 1345678999999999997654
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.72 E-value=1.7e-16 Score=162.80 Aligned_cols=305 Identities=12% Similarity=0.060 Sum_probs=171.1
Q ss_pred cCCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC----
Q 041007 163 IDPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP---- 238 (597)
Q Consensus 163 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~---- 238 (597)
..+..|+||+.++++|.+ +. . +++.|+|++|+|||+|++++++. ... ..+|+++...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~------------~-~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR------------A-PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERN 70 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC------------S-SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCS
T ss_pred CCHHHhcChHHHHHHHHH-hc------------C-CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhcccc
Confidence 456789999999999999 75 1 59999999999999999999873 322 2578877642
Q ss_pred -CchhhhhhhhhhhcccchHHHHHHHHHHhc--------------cC------CC-C--------chhhHHHHHHHHHHH
Q 041007 239 -RDEIRVARDEISVARDRDEIRVAKAILESL--------------KG------SV-S--------SQVEMETVLQYINEF 288 (597)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~il~~l--------------~~------~~-~--------~~~~~~~~~~~l~~~ 288 (597)
.+. ...+..+.+.+ .. +. . .......+...+.+.
T Consensus 71 ~~~~----------------~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 134 (357)
T 2fna_A 71 YISY----------------KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA 134 (357)
T ss_dssp CCCH----------------HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT
T ss_pred CCCH----------------HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc
Confidence 111 11111111111 00 00 0 112345555555544
Q ss_pred hcCceEEEEEecccCCCC---cchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccc--cceeecCCCChH
Q 041007 289 VQGKKVLLVLDDLWWNAY---PRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTN--MMEIGLGELSEE 363 (597)
Q Consensus 289 L~~kr~LLVLDdv~~~~~---~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~--~~~~~l~~Ls~~ 363 (597)
.. ++++|||||+++.+. ...+..+. .+.....+..+|+|++.................... ...+.+.||+.+
T Consensus 135 ~~-~~~vlvlDe~~~~~~~~~~~~~~~l~-~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~ 212 (357)
T 2fna_A 135 SK-DNVIIVLDEAQELVKLRGVNLLPALA-YAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSRE 212 (357)
T ss_dssp CS-SCEEEEEETGGGGGGCTTCCCHHHHH-HHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHH
T ss_pred CC-CCeEEEEECHHHhhccCchhHHHHHH-HHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHH
Confidence 33 499999999988642 22333333 332223467899998864100000000000001111 124899999999
Q ss_pred HHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhhccCCCHHHHHHHH-hhhcccCChhhhhhcCCCC
Q 041007 364 ECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGSLLRFKTSIKEWQSVL-DSEIWNLDSEICKRAGVGY 442 (597)
Q Consensus 364 es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l~~~~~~~~w~~~l-~~~~~~~~~~~~~~~~~~~ 442 (597)
|+.+++...+...+. .... ...|++.|+|+|+++..++..+....+...|...+ +.....+ ..
T Consensus 213 e~~~~l~~~~~~~~~--~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 276 (357)
T 2fna_A 213 EAIEFLRRGFQEADI--DFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLI----------LK 276 (357)
T ss_dssp HHHHHHHHHHHHHTC--CCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHHcCC--CCCc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHH----------HH
Confidence 999999876531111 1111 17899999999999999987764333333342211 1100000 00
Q ss_pred CcccchhccccCCChhHhHHHHHhhcCCCCcccChhHHHHHHH-HcCCcccCCCCCHHHHHHHHHHHHhhCCCccccccc
Q 041007 443 ECLSPLLLSYFDLSPALKKCFLYCSIFPKNYEIEKDRLIKLWM-AQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQKS 521 (597)
Q Consensus 443 ~~~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~-aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~~ 521 (597)
.+...+. .-..|++..+..+..+|+ +. +...|..... ..|. .. .......+++.|++.+||....
T Consensus 277 ~l~~~~~-~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~-----~~-~~~~~~~~L~~L~~~gli~~~~-- 342 (357)
T 2fna_A 277 EFENFLH-GREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI-----EI-SDSEIYNYLTQLTKHSWIIKEG-- 342 (357)
T ss_dssp HHHHHHT-TCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS-----CC-CHHHHHHHHHHHHHTTSEEESS--
T ss_pred HHHHHhh-ccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC-----CC-CHHHHHHHHHHHHhCCCEEecC--
Confidence 0111110 001688899999999998 21 3444433211 1121 01 1235678999999999997542
Q ss_pred CCCCeeeEEEe-ChHHHHHH
Q 041007 522 EFDGRIIRCQM-HPIVHEFA 540 (597)
Q Consensus 522 ~~~~~~~~~~m-H~lv~~~a 540 (597)
+ .|++ |++++++.
T Consensus 343 --~----~y~f~~~~~~~~l 356 (357)
T 2fna_A 343 --E----KYCPSEPLISLAF 356 (357)
T ss_dssp --S----CEEESSHHHHHHT
T ss_pred --C----EEEecCHHHHHhh
Confidence 1 2664 78888764
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.67 E-value=2e-17 Score=138.68 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcc--ccccCCcHHHHHHHHHHHhhhhhhhhHH
Q 041007 6 TVSTVLDQLSSITQQMNGARLLVGGVVTDVEKLRSHLEAIREVLDDAEKR--QVKDVKDKAVEDWLRELTDTCYAVDDAL 83 (597)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~~~~Wl~~l~~~ayd~ed~l 83 (597)
+++++++||.++ +.+|+.++.||++++++|+++|++|+++|.+++.+ +. .++.++.|+++||+++||+|||+
T Consensus 2 ~v~~ll~KL~~l---l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~---~d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 2 AISNLIPKLGEL---LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQ---LDSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp TTCSHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH---HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999998 78999999999999999999999999999999987 44 78999999999999999999999
Q ss_pred HHHHHHHH
Q 041007 84 DEWNTAIQ 91 (597)
Q Consensus 84 d~~~~~~~ 91 (597)
|+|.++..
T Consensus 76 D~f~~~~~ 83 (115)
T 3qfl_A 76 DKFLVQVD 83 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998764
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.57 E-value=6.4e-13 Score=137.69 Aligned_cols=304 Identities=15% Similarity=0.073 Sum_probs=177.9
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc------CCeeEEEEecC
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN------FDKRIWVSASY 237 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~~~~ 237 (597)
.|..|+||+.+++++..++..... ....+.+.|+|++|+|||+||+.+++. .... -...+|+++..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~------~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR------GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS------SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc------CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCc
Confidence 347799999999999999964321 124578999999999999999999984 3221 12356777766
Q ss_pred CCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc-hhhHHHHHHHHHHHhc--CceEEEEEecccCCCCcc-hHHHH
Q 041007 238 PRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS-QVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAYPR-YWEQL 313 (597)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~~~-~~~~l 313 (597)
..+. ..++..++..++...+. ......+...+...+. +++.+||||+++...... ..+.+
T Consensus 89 ~~~~----------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l 152 (387)
T 2v1u_A 89 RETP----------------YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLL 152 (387)
T ss_dssp SCSH----------------HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHH
T ss_pred CCCH----------------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHH
Confidence 5555 77788888888654322 2234455556666663 568999999997553110 22233
Q ss_pred HHhhc---CC--CCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccC-CCCCCccchHH
Q 041007 314 MYSLK---SG--SEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHG-RSSDYREKFEP 387 (597)
Q Consensus 314 ~~~l~---~~--~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~-~~~~~~~~~~~ 387 (597)
...+. .. ..+..+|.||+......... ..+. .-.....+.+.|++.++..+++...+... ...... .+
T Consensus 153 ~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~-~~l~--~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~ 226 (387)
T 2v1u_A 153 YRITRINQELGDRVWVSLVGITNSLGFVENLE-PRVK--SSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PD 226 (387)
T ss_dssp HHHHHGGGCC-----CEEEEECSCSTTSSSSC-HHHH--TTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SS
T ss_pred HhHhhchhhcCCCceEEEEEEECCCchHhhhC-HHHH--hcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HH
Confidence 33232 11 45667788877652111110 0000 00111238999999999999999875320 111112 23
Q ss_pred HHHHHHHhcC---CchH-HHHHHHhhh---c--cC--CCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCC
Q 041007 388 IGRRVVGKCK---GLPF-AVKILGSLL---R--FK--TSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLS 456 (597)
Q Consensus 388 ~~~~I~~~~~---GlPL-ai~~~~~~l---~--~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~ 456 (597)
..+.|++.++ |.|- ++..+..+. . .. -+.+.+...+..... ..+.-++..|+
T Consensus 227 ~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~-----------------~~~~~~~~~l~ 289 (387)
T 2v1u_A 227 VVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER-----------------DRVSEVVRTLP 289 (387)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-----------------HHHHHHHHSSC
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-----------------chHHHHHHcCC
Confidence 4567777777 9994 333332221 1 11 145666665554211 12444678899
Q ss_pred hhHhHHHHHhh-cCCCCcccChhHHHHHHHH----cCCcccCCCCCHHHHHHHHHHHHhhCCCccccc
Q 041007 457 PALKKCFLYCS-IFPKNYEIEKDRLIKLWMA----QGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQ 519 (597)
Q Consensus 457 ~~~k~cf~~ls-~Fp~~~~i~~~~Li~~W~a----eg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~ 519 (597)
++.+..+..++ ++.....+....+.+.... .| +. .-....+..+++.|...|++....
T Consensus 290 ~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 290 LHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 98888777666 4432234555544443222 22 11 112356788999999999998754
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=5.9e-13 Score=138.12 Aligned_cols=303 Identities=14% Similarity=0.097 Sum_probs=181.9
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccC-CeeEEEEecCCCchhh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANF-DKRIWVSASYPRDEIR 243 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~ 243 (597)
|..++||+.++++|..++...... ..+..+.+.|+|++|+|||||++.+++ ...... ...+|+++....+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~----~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~-- 87 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRN----PGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNF-- 87 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHS----TTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSH--
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC----CCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCH--
Confidence 467999999999999998753110 012334899999999999999999987 333331 34667776665555
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCc-hhhHHHHHHHHHHHhc--CceEEEEEecccCCCCcchHHHHHHhhcCC
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSS-QVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAYPRYWEQLMYSLKSG 320 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~ 320 (597)
..++..++..++...+. ......+...+...+. +++.+||||++++.+ ......+...+...
T Consensus 88 --------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-~~~~~~L~~~~~~~ 152 (389)
T 1fnn_A 88 --------------TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-PDILSTFIRLGQEA 152 (389)
T ss_dssp --------------HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-HHHHHHHHHHTTCH
T ss_pred --------------HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-hHHHHHHHHHHHhC
Confidence 67777888877654321 2234445555555554 568999999998874 45555665555332
Q ss_pred C----CCcEEEEEccCCCCCCCcccccccccCcc---ccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHH
Q 041007 321 S----EGSRILVTRSGGKNGTNMTEIGLGEKNGT---NMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVV 393 (597)
Q Consensus 321 ~----~gs~IIvTtR~~~~~~~~~~~~~~~~~~~---~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~ 393 (597)
. .+..||++|+......... ..+. ....+.+.|++.++..+++...+...... ..-..+....|+
T Consensus 153 ~~~~~~~~~iI~~~~~~~~~~~l~------~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~ 224 (389)
T 1fnn_A 153 DKLGAFRIALVIVGHNDAVLNNLD------PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIA 224 (389)
T ss_dssp HHHSSCCEEEEEEESSTHHHHTSC------HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHH
T ss_pred CCCCcCCEEEEEEECCchHHHHhC------HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHH
Confidence 2 4677888776541000000 0110 11138999999999999998876421100 111245678889
Q ss_pred Hhc---------CCchHHHHHHHhhh-c-----cC--CCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCC
Q 041007 394 GKC---------KGLPFAVKILGSLL-R-----FK--TSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLS 456 (597)
Q Consensus 394 ~~~---------~GlPLai~~~~~~l-~-----~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~ 456 (597)
+.+ +|.|..+..+.... . .. -+.+.....+.... ...+.-.+..|+
T Consensus 225 ~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------------~~~~~~~l~~l~ 287 (389)
T 1fnn_A 225 DITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL-----------------FGISEEVLIGLP 287 (389)
T ss_dssp HHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS-----------------CCCCHHHHHHSC
T ss_pred HHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh-----------------hhhHHHHHHcCC
Confidence 988 78875544333221 1 11 12333333332211 122334567889
Q ss_pred hhHhHHHHHhhcCC---CCcccChhHHHHHHHH----cCCcccCCCCCHHHHHHHHHHHHhhCCCcccccc
Q 041007 457 PALKKCFLYCSIFP---KNYEIEKDRLIKLWMA----QGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQK 520 (597)
Q Consensus 457 ~~~k~cf~~ls~Fp---~~~~i~~~~Li~~W~a----eg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~ 520 (597)
++.+.++..++.+. .+-.+....+...+-. .|. ...+ ......+++.|...++|.....
T Consensus 288 ~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~-~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 288 LHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE----RPRV-HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC----CCCC-HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC----CCCC-HHHHHHHHHHHHhCCCeEEeee
Confidence 99998888887654 2214555666555443 121 1111 2456789999999999987543
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=6.6e-13 Score=137.55 Aligned_cols=302 Identities=12% Similarity=0.017 Sum_probs=176.8
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhh----cc--CCeeEEEEecCC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVK----AN--FDKRIWVSASYP 238 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~~~~~ 238 (597)
|..|+||+.+++++..++..... ....+.+.|+|++|+|||+||+.+++..... .. ....+|+++...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 47799999999999988864221 1245699999999999999999999842111 11 234677776544
Q ss_pred C-chhhhhhhhhhhcccchHHHHHHHHHHhccCCCC--chhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHH
Q 041007 239 R-DEIRVARDEISVARDRDEIRVAKAILESLKGSVS--SQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMY 315 (597)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~ 315 (597)
. +. ..++..++..+.+... .......+...+.+.+..++.+|||||+++.......+.+..
T Consensus 93 ~~~~----------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~ 156 (384)
T 2qby_B 93 GGTP----------------QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLY 156 (384)
T ss_dssp CSCH----------------HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHH
T ss_pred CCCH----------------HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHH
Confidence 3 43 6677777777733211 122234556677777776666999999976531111222022
Q ss_pred hhcCCCCCcEEEEEccCCCCCCCcccccccccCcccc--ceeecCCCChHHHHHHHHHHhccC-CCCCCccchHHHHHHH
Q 041007 316 SLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM--MEIGLGELSEEECRSLFRQIAFHG-RSSDYREKFEPIGRRV 392 (597)
Q Consensus 316 ~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Ls~~es~~Lf~~~~~~~-~~~~~~~~~~~~~~~I 392 (597)
.+.....+..||+||+.......... .+... ..+.+.|++.++..++|...+... ...... .+..+.|
T Consensus 157 ~l~~~~~~~~iI~~t~~~~~~~~l~~------~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i 227 (384)
T 2qby_B 157 QLLRSDANISVIMISNDINVRDYMEP------RVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYI 227 (384)
T ss_dssp HHHTSSSCEEEEEECSSTTTTTTSCH------HHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHH
T ss_pred HHhcCCcceEEEEEECCCchHhhhCH------HHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHH
Confidence 33222267888888886521110000 11111 149999999999999999886421 111111 3456677
Q ss_pred HHhcC---CchH-HHHHHHhhh--c-c--CCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHHH
Q 041007 393 VGKCK---GLPF-AVKILGSLL--R-F--KTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKCF 463 (597)
Q Consensus 393 ~~~~~---GlPL-ai~~~~~~l--~-~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf 463 (597)
++.|+ |.|. ++..+-... . . .-+.+.+...+..... ..+..++..|+++.+..+
T Consensus 228 ~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~l 290 (384)
T 2qby_B 228 AAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ-----------------ERLIEAVKALPFHYKLAL 290 (384)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-----------------HHHHHHHHSSCHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-----------------chHHHHHHcCCHHHHHHH
Confidence 77887 8887 444333222 1 1 1256777666654211 235556788999888888
Q ss_pred HHhhcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHhhCCCcccccc
Q 041007 464 LYCSIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFGNLSSRSLFQDFQK 520 (597)
Q Consensus 464 ~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~~~ 520 (597)
..++....+-.+. .......-..| +. .........+++.|...|++.....
T Consensus 291 ~al~~~~~~~~~~-~~~~~~~~~~g-~~----~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 291 RSLIESEDVMSAH-KMYTDLCNKFK-QK----PLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHTCCBHHHHH-HHHHHHHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhcccChHH-HHHHHHHHHcC-CC----CCCHHHHHHHHHHHHhCCCEEEEec
Confidence 7777611101111 11112111222 11 1123466789999999999986543
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.5e-12 Score=134.88 Aligned_cols=304 Identities=14% Similarity=0.089 Sum_probs=171.7
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccC---CeeEEEEecCCCc
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANF---DKRIWVSASYPRD 240 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~~~~~~~ 240 (597)
.|..|+||+.+++.|.+++..... ......+.|+|++|+|||||++.+++ .....+ ...+|+++.....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~------~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR------EEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG------TCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc------CCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCC
Confidence 357799999999999999874311 12457899999999999999999998 344432 2466777654433
Q ss_pred hhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc-hhhHHHHHHHHHHHhc--CceEEEEEecccCCCC---cchHHHHH
Q 041007 241 EIRVARDEISVARDRDEIRVAKAILESLKGSVSS-QVEMETVLQYINEFVQ--GKKVLLVLDDLWWNAY---PRYWEQLM 314 (597)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LLVLDdv~~~~~---~~~~~~l~ 314 (597)
. ..++..++..++...+. ..+...+...+.+.+. +++.+||||++++... ...+..+.
T Consensus 90 ~----------------~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~ 153 (386)
T 2qby_A 90 P----------------YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLS 153 (386)
T ss_dssp H----------------HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHH
T ss_pred H----------------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHh
Confidence 3 56666776666543221 1223444555555554 4589999999976421 22344444
Q ss_pred HhhcC-CCCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHH
Q 041007 315 YSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVV 393 (597)
Q Consensus 315 ~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~ 393 (597)
..+.. ...+..+|+||+......... ..+. .......+.+.|++.++..+++...+..... ...-..+....|+
T Consensus 154 ~~~~~~~~~~~~~I~~~~~~~~~~~~~-~~~~--~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~ 228 (386)
T 2qby_A 154 RINSEVNKSKISFIGITNDVKFVDLLD-PRVK--SSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCA 228 (386)
T ss_dssp HHHHSCCC--EEEEEEESCGGGGGGCT-THHH--HTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHH
T ss_pred hchhhcCCCeEEEEEEECCCChHhhhC-HHHh--ccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHH
Confidence 44432 234566777776541000000 0000 0001124999999999999999986531110 0111245567777
Q ss_pred HhcC---CchHHH-HHHHhhhc-----c--CCCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCChhHhHH
Q 041007 394 GKCK---GLPFAV-KILGSLLR-----F--KTSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSPALKKC 462 (597)
Q Consensus 394 ~~~~---GlPLai-~~~~~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~c 462 (597)
+.++ |.|..+ .++..... . .-+.+.+..++.... ...+.-++..||++.+..
T Consensus 229 ~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-----------------~~~~~~~~~~l~~~~~~i 291 (386)
T 2qby_A 229 ALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-----------------RDRVRDIILTLPFHSKLV 291 (386)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-----------------HHHHHHHHHTSCHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-----------------hchHHHHHHcCCHHHHHH
Confidence 7777 999844 33322211 1 114555555554321 113445667888888887
Q ss_pred HHHhhcCCC-C-cccChhHHHHHHH--H--cCCcccCCCCCHHHHHHHHHHHHhhCCCcccc
Q 041007 463 FLYCSIFPK-N-YEIEKDRLIKLWM--A--QGYLKSQESKDMELVGEEYFGNLSSRSLFQDF 518 (597)
Q Consensus 463 f~~ls~Fp~-~-~~i~~~~Li~~W~--a--eg~i~~~~~~~~e~~~~~~l~~Lv~rsli~~~ 518 (597)
+..++.+.+ + ..+....+.+... + .|. . .-.......+++.|...++|...
T Consensus 292 l~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~-~----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 292 LMAVVSISSEENVVSTTGAVYETYLNICKKLGV-E----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHC-----CEEHHHHHHHHHHHHHHHTC-C----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC-C----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 777764321 2 1233433322211 1 121 1 11123567799999999999764
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.40 E-value=1.1e-11 Score=119.24 Aligned_cols=200 Identities=13% Similarity=0.135 Sum_probs=119.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..|+||+..++.|..++.... ....+.|+|++|+||||||+.+++. ....+.... ..+.. .
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~---------~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~-~~~~~---~---- 83 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR---------IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITA-TPCGV---C---- 83 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC---------CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCS-SCCSC---S----
T ss_pred HHHhCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCC-CCCcc---c----
Confidence 468999999999999997432 2458999999999999999999873 322211100 00000 0
Q ss_pred hhhhhhcccchHHHHHHHHHHhc-----cCCCCchhhHHHHHHHHHHH----hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILESL-----KGSVSSQVEMETVLQYINEF----VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l-----~~~~~~~~~~~~~~~~l~~~----L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
.. ...+.... ..........+.+...+... ..+++.+|||||+++.+ ...++.+...
T Consensus 84 ------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-~~~~~~l~~~ 149 (250)
T 1njg_A 84 ------------DN-CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKT 149 (250)
T ss_dssp ------------HH-HHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-HHHHHHHHHH
T ss_pred ------------HH-HHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc-HHHHHHHHHH
Confidence 00 00000000 00000011111122222211 13567999999998765 5567777777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhc
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKC 396 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~ 396 (597)
+.....+..+|+||+........ -......+.+.+++.++..+++...+...+.. -..+....|++.|
T Consensus 150 l~~~~~~~~~i~~t~~~~~~~~~--------l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~ 217 (250)
T 1njg_A 150 LEEPPEHVKFLLATTDPQKLPVT--------ILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAA 217 (250)
T ss_dssp HHSCCTTEEEEEEESCGGGSCHH--------HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHHH
T ss_pred HhcCCCceEEEEEeCChHhCCHH--------HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHc
Confidence 76666778888888764211000 00112239999999999999999887542211 1245678999999
Q ss_pred CCchHHHHHHHhhh
Q 041007 397 KGLPFAVKILGSLL 410 (597)
Q Consensus 397 ~GlPLai~~~~~~l 410 (597)
+|+|..+..+...+
T Consensus 218 ~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 218 EGSLRDALSLTDQA 231 (250)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999988775543
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.34 E-value=1.9e-11 Score=115.89 Aligned_cols=185 Identities=14% Similarity=0.044 Sum_probs=114.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc-CC-eeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN-FD-KRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~ 243 (597)
..++||+..++.+.+++... ..+.+.|+|++|+|||+||+.+++. .... +. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~----------~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~-- 82 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK----------NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGI-- 82 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT----------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCH--
T ss_pred HHHcCcHHHHHHHHHHHhCC----------CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccCh--
Confidence 46899999999999999743 2334999999999999999999873 3222 21 2233333222211
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCC
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEG 323 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~g 323 (597)
.. ....+....... ....+++.+|||||++... ....+.+...+.....+
T Consensus 83 --------------~~-~~~~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~-~~~~~~l~~~l~~~~~~ 132 (226)
T 2chg_A 83 --------------DV-VRHKIKEFARTA--------------PIGGAPFKIIFLDEADALT-ADAQAALRRTMEMYSKS 132 (226)
T ss_dssp --------------HH-HHHHHHHHHTSC--------------CSTTCSCEEEEEETGGGSC-HHHHHHHHHHHHHTTTT
T ss_pred --------------HH-HHHHHHHHhccc--------------CCCccCceEEEEeChhhcC-HHHHHHHHHHHHhcCCC
Confidence 11 111111110000 0012578999999998765 44566666666666677
Q ss_pred cEEEEEccCCCCCCCcccccccccCccc-cceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHH
Q 041007 324 SRILVTRSGGKNGTNMTEIGLGEKNGTN-MMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFA 402 (597)
Q Consensus 324 s~IIvTtR~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 402 (597)
..+|+||+....... .+.. ...+.+.+++.++..+++.+.+...+.. -..+....|++.++|.|..
T Consensus 133 ~~~i~~~~~~~~~~~---------~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~ 199 (226)
T 2chg_A 133 CRFILSCNYVSRIIE---------PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRK 199 (226)
T ss_dssp EEEEEEESCGGGSCH---------HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHH
T ss_pred CeEEEEeCChhhcCH---------HHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 888888875411100 1111 1138999999999999999877432211 1145678899999999996
Q ss_pred HHHHH
Q 041007 403 VKILG 407 (597)
Q Consensus 403 i~~~~ 407 (597)
+..+.
T Consensus 200 l~~~l 204 (226)
T 2chg_A 200 AINAL 204 (226)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.25 E-value=1.3e-10 Score=117.16 Aligned_cols=268 Identities=16% Similarity=0.091 Sum_probs=146.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..|+|++..++.+..++...... ......+.|+|++|+|||+||+.+++. .... .++++++.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-----~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~---- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-----KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKP---- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-----CSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-----CCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCCh----
Confidence 56999999999998888632100 013467889999999999999999873 3222 233433221111
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCC----
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGS---- 321 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~---- 321 (597)
.. +...+...+ .++.+|+||+++... ......+...+....
T Consensus 78 ------------~~---------------------l~~~l~~~~-~~~~~l~lDEi~~l~-~~~~~~L~~~l~~~~~~~v 122 (324)
T 1hqc_A 78 ------------GD---------------------LAAILANSL-EEGDILFIDEIHRLS-RQAEEHLYPAMEDFVMDIV 122 (324)
T ss_dssp ------------HH---------------------HHHHHTTTC-CTTCEEEETTTTSCC-HHHHHHHHHHHHHSEEEEC
T ss_pred ------------HH---------------------HHHHHHHhc-cCCCEEEEECCcccc-cchHHHHHHHHHhhhhHHh
Confidence 11 111111111 346799999997765 334444544443211
Q ss_pred --------------CCcEEEEEccCCCCCCCcccccccccCcccc--ceeecCCCChHHHHHHHHHHhccCCCCCCccch
Q 041007 322 --------------EGSRILVTRSGGKNGTNMTEIGLGEKNGTNM--MEIGLGELSEEECRSLFRQIAFHGRSSDYREKF 385 (597)
Q Consensus 322 --------------~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~ 385 (597)
.+..+|.||........ ..... ..+.+.+++.++..+++...+...+.. -.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~---------~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~----~~ 189 (324)
T 1hqc_A 123 IGQGPAARTIRLELPRFTLIGATTRPGLITA---------PLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR----IT 189 (324)
T ss_dssp CSSSSSCCCEEEECCCCEEEEEESCCSSCSC---------STTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC----CC
T ss_pred ccccccccccccCCCCEEEEEeCCCcccCCH---------HHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC----CC
Confidence 23566666654421110 11222 238999999999999998877532221 12
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhhhcc------C--CCHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCCh
Q 041007 386 EPIGRRVVGKCKGLPFAVKILGSLLRF------K--TSIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSP 457 (597)
Q Consensus 386 ~~~~~~I~~~~~GlPLai~~~~~~l~~------~--~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 457 (597)
.+....|++.|+|+|-.+..+...+.. . -+.+.....+.. +..++..|+.
T Consensus 190 ~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~l~~ 247 (324)
T 1hqc_A 190 EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA----------------------LGLDELGLEK 247 (324)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH----------------------HTCCTTCCCH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----------------------hcccccCCCH
Confidence 456788999999999887766544321 1 123333333322 1122344555
Q ss_pred hHhHHHHHhh-cCCCC----------cccChhHHHH----HHHHcCCccc-CCCCCHHHHHHHHHH-HHhhCCCccc
Q 041007 458 ALKKCFLYCS-IFPKN----------YEIEKDRLIK----LWMAQGYLKS-QESKDMELVGEEYFG-NLSSRSLFQD 517 (597)
Q Consensus 458 ~~k~cf~~ls-~Fp~~----------~~i~~~~Li~----~W~aeg~i~~-~~~~~~e~~~~~~l~-~Lv~rsli~~ 517 (597)
..+..+..+. .|..+ ..+++..+.+ +-+..|++.. ..+....+.|.+||+ ++.+|+||||
T Consensus 248 ~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 248 RDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 5555555433 33222 1134444433 2455778765 334556678888887 8888888875
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=1.7e-10 Score=116.21 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=112.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc-CC-eeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN-FD-KRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~ 243 (597)
..++|++..++.|..++... ..+.+.|+|++|+|||++|+.+++. .... +. ..++++.+....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~----------~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~--- 85 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG----------NMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRG--- 85 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC----------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCS---
T ss_pred HHHHCCHHHHHHHHHHHHcC----------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccC---
Confidence 56899999999999999743 2334899999999999999999883 3221 11 133333222111
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHh-cCceEEEEEecccCCCCcchHHHHHHhhcCCCC
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSE 322 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~ 322 (597)
......++..+... ...+ .+++.+|||||++... ...++.+...+.....
T Consensus 86 --------------~~~i~~~~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~-~~~~~~L~~~le~~~~ 136 (323)
T 1sxj_B 86 --------------IDVVRNQIKHFAQK--------------KLHLPPGKHKIVILDEADSMT-AGAQQALRRTMELYSN 136 (323)
T ss_dssp --------------HHHHHTHHHHHHHB--------------CCCCCTTCCEEEEEESGGGSC-HHHHHTTHHHHHHTTT
T ss_pred --------------hHHHHHHHHHHHhc--------------cccCCCCCceEEEEECcccCC-HHHHHHHHHHHhccCC
Confidence 11111111111100 0011 3458899999998765 3455556666655566
Q ss_pred CcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchH
Q 041007 323 GSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPF 401 (597)
Q Consensus 323 gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 401 (597)
++.+|+||........ .+...+ .+.+.+++.++..+++...+...+.. -..+....|++.|+|.|.
T Consensus 137 ~~~~il~~~~~~~l~~---------~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r 203 (323)
T 1sxj_B 137 STRFAFACNQSNKIIE---------PLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMR 203 (323)
T ss_dssp TEEEEEEESCGGGSCH---------HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHH
T ss_pred CceEEEEeCChhhchh---------HHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 7888888865411000 111111 39999999999999999876422211 114567889999999995
Q ss_pred -HHHHHHh
Q 041007 402 -AVKILGS 408 (597)
Q Consensus 402 -ai~~~~~ 408 (597)
++..+..
T Consensus 204 ~a~~~l~~ 211 (323)
T 1sxj_B 204 QAINNLQS 211 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4554433
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=2.4e-09 Score=107.97 Aligned_cols=186 Identities=14% Similarity=0.091 Sum_probs=113.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccC-C-eeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANF-D-KRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~ 243 (597)
..++|++..++.|..++... ..+.+.|+|++|+|||++|+.+++. ..... . ..+.+..+....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~----------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~--- 89 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG----------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERG--- 89 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHH---
T ss_pred HHhhCCHHHHHHHHHHHHcC----------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCc---
Confidence 45899999999999999743 3345999999999999999999883 32211 1 122333221100
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCC
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEG 323 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~g 323 (597)
.......+...... .....+++.+||+||++... ...++.+...+.....+
T Consensus 90 --------------~~~~~~~~~~~~~~--------------~~~~~~~~~vliiDe~~~l~-~~~~~~L~~~le~~~~~ 140 (327)
T 1iqp_A 90 --------------INVIREKVKEFART--------------KPIGGASFKIIFLDEADALT-QDAQQALRRTMEMFSSN 140 (327)
T ss_dssp --------------HHTTHHHHHHHHHS--------------CCGGGCSCEEEEEETGGGSC-HHHHHHHHHHHHHTTTT
T ss_pred --------------hHHHHHHHHHHHhh--------------CCcCCCCCeEEEEeCCCcCC-HHHHHHHHHHHHhcCCC
Confidence 00000001000000 00112568899999998775 45666677777666677
Q ss_pred cEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHH
Q 041007 324 SRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFA 402 (597)
Q Consensus 324 s~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 402 (597)
+++|+||........ .+...+ .+.+.|++.++..+++...+...+.. -..+....|++.++|.|..
T Consensus 141 ~~~i~~~~~~~~l~~---------~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~ 207 (327)
T 1iqp_A 141 VRFILSCNYSSKIIE---------PIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRR 207 (327)
T ss_dssp EEEEEEESCGGGSCH---------HHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHH
T ss_pred CeEEEEeCCccccCH---------HHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHH
Confidence 888888765411000 111111 38999999999999998876432211 1245678899999999986
Q ss_pred HHHHHh
Q 041007 403 VKILGS 408 (597)
Q Consensus 403 i~~~~~ 408 (597)
+..+..
T Consensus 208 ~~~~l~ 213 (327)
T 1iqp_A 208 AINILQ 213 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654433
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.01 E-value=5.9e-09 Score=103.32 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=103.7
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhc---cCC--eeEEEEecCCCch
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKA---NFD--KRIWVSASYPRDE 241 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~F~--~~~wv~~~~~~~~ 241 (597)
.+.||++|+++|...|...-. .+..+.+.|+|++|+|||++++.+++...... ... ..+.+++....+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred ccCCHHHHHHHHHHHHHHHhc------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 378999999999988875432 23578999999999999999999998432111 111 2455665555555
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccCCCCc-hhhHHHHHHHHHHH--hcCceEEEEEecccCCCCcchHHHHHHhhc
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKGSVSS-QVEMETVLQYINEF--VQGKKVLLVLDDLWWNAYPRYWEQLMYSLK 318 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~--L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~ 318 (597)
..++..|.+++.+.... ....+.+...+... -.+++++++||+++... .-+.+...+.
T Consensus 95 ----------------~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---~q~~L~~l~~ 155 (318)
T 3te6_A 95 ----------------DALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---SEKILQYFEK 155 (318)
T ss_dssp ----------------HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---CTHHHHHHHH
T ss_pred ----------------HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---cchHHHHHHh
Confidence 77888888888654321 11223333333322 24678999999997654 2233333332
Q ss_pred --CC-CCCcEEEEEccCCCCCCCcccccccccCccccc---eeecCCCChHHHHHHHHHHhc
Q 041007 319 --SG-SEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM---EIGLGELSEEECRSLFRQIAF 374 (597)
Q Consensus 319 --~~-~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~---~~~l~~Ls~~es~~Lf~~~~~ 374 (597)
.. .....||.++... ..+. ..+. ..+...+ .+.+.|++.+|..+++.+++.
T Consensus 156 ~~~~~~s~~~vI~i~n~~-d~~~---~~L~-~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 156 WISSKNSKLSIICVGGHN-VTIR---EQIN-IMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHCSSCCEEEEEECCSS-CCCH---HHHH-TCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cccccCCcEEEEEEecCc-ccch---hhcc-hhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1222333334332 0100 0000 0111121 289999999999999998874
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.89 E-value=3.1e-08 Score=101.79 Aligned_cols=196 Identities=12% Similarity=0.136 Sum_probs=113.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..++|++..++.|...+.... ....+.|+|++|+||||+|+.+++. ....... ....+...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~---------~~~~~ll~G~~G~GKT~la~~la~~--l~~~~~~-~~~~~~~~------- 76 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR---------IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGI-TATPCGVC------- 76 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC---------CCSEEEEESCTTSSHHHHHHHHHHH--HSCTTCS-CSSCCSSS-------
T ss_pred hhccCcHHHHHHHHHHHHhCC---------CCeEEEEECCCCCCHHHHHHHHHHH--hCCCCCC-CCCCCccc-------
Confidence 458999999999999997432 2457899999999999999999773 2211100 00000000
Q ss_pred hhhhhhcccchHHHHHHHHHHh-------ccCCC-CchhhHHHHHHHHHHH-hcCceEEEEEecccCCCCcchHHHHHHh
Q 041007 246 RDEISVARDRDEIRVAKAILES-------LKGSV-SSQVEMETVLQYINEF-VQGKKVLLVLDDLWWNAYPRYWEQLMYS 316 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~-------l~~~~-~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~~~~~~~~~~l~~~ 316 (597)
.....+... +.... ........+...+... ..+++.+||+||++..+ ....+.+...
T Consensus 77 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-~~~~~~Ll~~ 142 (373)
T 1jr3_A 77 -------------DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKT 142 (373)
T ss_dssp -------------HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-HHHHHHHHHH
T ss_pred -------------HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-HHHHHHHHHH
Confidence 000000000 00000 0111222222222111 13567899999998776 5566777777
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCcc-ccceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGT-NMMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~-~~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+.....+..+|++|........ .+. ....+.+.+++.++..+++...+...+.. -..+....|++.
T Consensus 143 le~~~~~~~~Il~~~~~~~l~~---------~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~----~~~~a~~~l~~~ 209 (373)
T 1jr3_A 143 LEEPPEHVKFLLATTDPQKLPV---------TILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARA 209 (373)
T ss_dssp HHSCCSSEEEEEEESCGGGSCH---------HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHH
T ss_pred HhcCCCceEEEEEeCChHhCcH---------HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHH
Confidence 7666667777777764411000 111 11238999999999999998776322211 114567889999
Q ss_pred cCCchHHHHHHH
Q 041007 396 CKGLPFAVKILG 407 (597)
Q Consensus 396 ~~GlPLai~~~~ 407 (597)
++|.|..+..+.
T Consensus 210 ~~G~~r~~~~~l 221 (373)
T 1jr3_A 210 AEGSLRDALSLT 221 (373)
T ss_dssp SSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999999876554
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.80 E-value=2.1e-08 Score=100.56 Aligned_cols=183 Identities=15% Similarity=0.063 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhc-cCC-eeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKA-NFD-KRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~~~~~~~~~~ 243 (597)
.+++|++..++.|..++... ..+.+.|+|++|+|||++|+.+++. ... .+. ..+.++.+..... .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~----------~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~ 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK----------NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGI-D 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT----------CCCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCT-T
T ss_pred HHHhCCHHHHHHHHHHHhCC----------CCCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccCh-H
Confidence 45899999999999988742 2334899999999999999999873 211 111 1223333321111 0
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHh-cCceEEEEEecccCCCCcchHHHHHHhhcCCCC
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFV-QGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSE 322 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~ 322 (597)
. .......+... ..+ .+++.++|+|+++... ....+.+...+.....
T Consensus 84 ~------------~~~~~~~~~~~-------------------~~~~~~~~~vliiDe~~~l~-~~~~~~L~~~le~~~~ 131 (319)
T 2chq_A 84 V------------VRHKIKEFART-------------------APIGGAPFKIIFLDEADALT-ADAQAALRRTMEMYSK 131 (319)
T ss_dssp T------------SSHHHHHHHHS-------------------CCSSSCCCEEEEEETGGGSC-HHHHHTTGGGTSSSSS
T ss_pred H------------HHHHHHHHHhc-------------------CCCCCCCceEEEEeCCCcCC-HHHHHHHHHHHHhcCC
Confidence 0 01111111100 001 2567899999997765 3344555555555556
Q ss_pred CcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchH
Q 041007 323 GSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPF 401 (597)
Q Consensus 323 gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPL 401 (597)
++.+|+||........ .+... ..+.+.+++.++..+++...+...+.. -..+....|++.++|.+.
T Consensus 132 ~~~~i~~~~~~~~l~~---------~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r 198 (319)
T 2chq_A 132 SCRFILSCNYVSRIIE---------PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFR 198 (319)
T ss_dssp SEEEEEEESCGGGSCH---------HHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHTTTTCHH
T ss_pred CCeEEEEeCChhhcch---------HHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 7788888755410000 11111 139999999999999998877432221 124567889999999998
Q ss_pred HHHHH
Q 041007 402 AVKIL 406 (597)
Q Consensus 402 ai~~~ 406 (597)
.+...
T Consensus 199 ~~~~~ 203 (319)
T 2chq_A 199 KAINA 203 (319)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.71 E-value=2.2e-07 Score=88.82 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=103.0
Q ss_pred Cccccch---hhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRN---AEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~---~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
..|+|++ ..++.+..++... ..+.+.|+|++|+|||+||+.+++. .......+.|++++......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~~ 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD----------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASIS 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC----------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGSC
T ss_pred hhccCCCCCHHHHHHHHHHHhCC----------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHHH
Confidence 4577633 5556666666522 3578999999999999999999883 43333445666654321110
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcch-HHHHHHhhcCC-
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRY-WEQLMYSLKSG- 320 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~-~~~l~~~l~~~- 320 (597)
. .+ + +.+ .++.+|||||++....... .+.+...+...
T Consensus 96 ---------------~----~~--------------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~ 134 (242)
T 3bos_A 96 ---------------T----AL--------------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA 134 (242)
T ss_dssp ---------------G----GG--------------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH
T ss_pred ---------------H----HH--------------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 0 00 0 001 3467999999977652222 23344333221
Q ss_pred CCC-cEEEEEccCCCCCCCcccccccccCcccc----ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 321 SEG-SRILVTRSGGKNGTNMTEIGLGEKNGTNM----MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 321 ~~g-s~IIvTtR~~~~~~~~~~~~~~~~~~~~~----~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
..+ ..+|+||+.......... ...... ..+.+.+++.++..+++...+...+.. -..+....|++.
T Consensus 135 ~~~~~~ii~~~~~~~~~~~~~~-----~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~ 205 (242)
T 3bos_A 135 EQKRGSLIVSASASPMEAGFVL-----PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ----LPEDVGRFLLNR 205 (242)
T ss_dssp HHCSCEEEEEESSCTTTTTCCC-----HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC----CCHHHHHHHHHH
T ss_pred HcCCCeEEEEcCCCHHHHHHhh-----hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHH
Confidence 122 247777765521111000 011111 238999999999999999877432211 124567889999
Q ss_pred cCCchHHHHHHH
Q 041007 396 CKGLPFAVKILG 407 (597)
Q Consensus 396 ~~GlPLai~~~~ 407 (597)
++|.+-.+..+.
T Consensus 206 ~~g~~r~l~~~l 217 (242)
T 3bos_A 206 MARDLRTLFDVL 217 (242)
T ss_dssp TTTCHHHHHHHH
T ss_pred ccCCHHHHHHHH
Confidence 999887665443
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.70 E-value=7.9e-08 Score=88.33 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=38.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.+++++.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~----------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR----------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS----------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC----------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999742 3467899999999999999999874
No 23
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.67 E-value=1.6e-06 Score=87.66 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=140.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..|+|++..++++..++..... .......|.|+|++|+|||+||+.+++ .....| +.+++.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-----~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~----- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-----RNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEK----- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-----TTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCS-----
T ss_pred HHhCChHHHHHHHHHHHHHHHh-----cCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccc-----
Confidence 5689999999999998874311 012345789999999999999999977 332222 2233221110
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCC----
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGS---- 321 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~---- 321 (597)
.. .+...+.. ..+..+|+||+++... ......+...+....
T Consensus 94 ------------~~--------------------~~~~~~~~--~~~~~vl~lDEi~~l~-~~~~~~Ll~~l~~~~~~~~ 138 (338)
T 3pfi_A 94 ------------SG--------------------DLAAILTN--LSEGDILFIDEIHRLS-PAIEEVLYPAMEDYRLDII 138 (338)
T ss_dssp ------------HH--------------------HHHHHHHT--CCTTCEEEEETGGGCC-HHHHHHHHHHHHTSCC---
T ss_pred ------------hh--------------------HHHHHHHh--ccCCCEEEEechhhcC-HHHHHHHHHHHHhccchhh
Confidence 11 11111111 2356799999997765 444455555554321
Q ss_pred --------------CCcEEEEEccCCCCCCCcccccccccCcccc--ceeecCCCChHHHHHHHHHHhccCCCCCCccch
Q 041007 322 --------------EGSRILVTRSGGKNGTNMTEIGLGEKNGTNM--MEIGLGELSEEECRSLFRQIAFHGRSSDYREKF 385 (597)
Q Consensus 322 --------------~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~ 385 (597)
++..+|.||..... .. ...... ..+.+.+++.++...++...+..... .-.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~atn~~~~-l~--------~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~ 205 (338)
T 3pfi_A 139 IGSGPAAQTIKIDLPKFTLIGATTRAGM-LS--------NPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCE 205 (338)
T ss_dssp ------CCCCCCCCCCCEEEEEESCGGG-SC--------HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EEC
T ss_pred cccCccccceecCCCCeEEEEeCCCccc-cC--------HHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCC
Confidence 12455555544210 00 011111 23899999999999999887743221 122
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhhh------ccCC--CHHHHHHHHhhhcccCChhhhhhcCCCCCcccchhccccCCCh
Q 041007 386 EPIGRRVVGKCKGLPFAVKILGSLL------RFKT--SIKEWQSVLDSEIWNLDSEICKRAGVGYECLSPLLLSYFDLSP 457 (597)
Q Consensus 386 ~~~~~~I~~~~~GlPLai~~~~~~l------~~~~--~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 457 (597)
.+....|++.+.|.|-.+..+...+ .... +.+.....+.. +..+...++.
T Consensus 206 ~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~l~~ 263 (338)
T 3pfi_A 206 EKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS----------------------LGVNELGFDA 263 (338)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH----------------------HTCCTTCCCH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH----------------------hCCcccCCCH
Confidence 4567889999999996554433221 1111 22222222221 2223334555
Q ss_pred hHhHHHHHhhcCCCCcccChhHHHHHHHHcCCcccCCCCCHHHHHHHHHH-HHhhCCCccccc
Q 041007 458 ALKKCFLYCSIFPKNYEIEKDRLIKLWMAQGYLKSQESKDMELVGEEYFG-NLSSRSLFQDFQ 519 (597)
Q Consensus 458 ~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~-~Lv~rsli~~~~ 519 (597)
..+..+..++-. .+..+....+... .|. + .....++++ .|++.++|....
T Consensus 264 ~e~~~l~~l~~~-~~~~~~~~~~a~~---lg~-------~-~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 264 MDLRYLELLTAA-KQKPIGLASIAAA---LSE-------D-ENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp HHHHHHHHHHHS-CSCCBCHHHHHHH---TTC-------C-HHHHHHTTHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHh-cCCCchHHHHHHH---hCC-------C-HHHHHHHHhHHHHHcCceecCC
Confidence 546666655555 4444555544332 222 1 224455566 888899997654
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=3.6e-07 Score=93.00 Aligned_cols=195 Identities=13% Similarity=0.086 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCC-eeEEEEecCCCchhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFD-KRIWVSASYPRDEIRV 244 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~ 244 (597)
..++|++..++.|..++.... .+.+.|+|++|+||||+|+.+++.......+. ..+.++.+.....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~----------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--- 103 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN----------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI--- 103 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT----------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH---
T ss_pred HHhhCCHHHHHHHHHHHhcCC----------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch---
Confidence 568999999999999987432 23489999999999999999988421111111 1223333221111
Q ss_pred hhhhhhhcccchHHHHHHHHHHhccC-CCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCC
Q 041007 245 ARDEISVARDRDEIRVAKAILESLKG-SVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEG 323 (597)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~g 323 (597)
......+..... ........ .....-.+++-+|++|+++... ......+...+......
T Consensus 104 --------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~-~~~~~~Ll~~le~~~~~ 163 (353)
T 1sxj_D 104 --------------SIVREKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMT-ADAQSALRRTMETYSGV 163 (353)
T ss_dssp --------------HHHTTHHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSC-HHHHHHHHHHHHHTTTT
T ss_pred --------------HHHHHHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccC-HHHHHHHHHHHHhcCCC
Confidence 111111111100 00000000 0001112356799999997665 44456666666655566
Q ss_pred cEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHH
Q 041007 324 SRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFA 402 (597)
Q Consensus 324 s~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 402 (597)
.++|++|........ .+...+ .+.+.+++.++....+...+...+... ..+..+.|++.++|.|-.
T Consensus 164 ~~~il~~~~~~~l~~---------~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 164 TRFCLICNYVTRIID---------PLASQCSKFRFKALDASNAIDRLRFISEQENVKC----DDGVLERILDISAGDLRR 230 (353)
T ss_dssp EEEEEEESCGGGSCH---------HHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHTSSCHHH
T ss_pred ceEEEEeCchhhCcc---------hhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHH
Confidence 777777644310000 111111 289999999999999988764322111 145678899999999986
Q ss_pred HHHH
Q 041007 403 VKIL 406 (597)
Q Consensus 403 i~~~ 406 (597)
+..+
T Consensus 231 ~~~~ 234 (353)
T 1sxj_D 231 GITL 234 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.52 E-value=2.1e-06 Score=89.81 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=100.2
Q ss_pred CccccchhhH---HHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNAEK---QKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~e~---~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
..++|.+..+ ..|...+... ....+.|+|++|+||||||+.+++ .....| +.++.....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~----------~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~- 87 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG----------HLHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSG- 87 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT----------CCCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCC-
T ss_pred HHhCCcHHHHhchHHHHHHHHcC----------CCcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCC-
Confidence 5689998888 6777777632 357899999999999999999988 333222 222221111
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCC
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSE 322 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~ 322 (597)
....+.++.. .......+++.+|+||+++... ....+.+...+.. .
T Consensus 88 ---------------~~~ir~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~-~~~q~~LL~~le~--~ 133 (447)
T 3pvs_A 88 ---------------VKEIREAIER----------------ARQNRNAGRRTILFVDEVHRFN-KSQQDAFLPHIED--G 133 (447)
T ss_dssp ---------------HHHHHHHHHH----------------HHHHHHTTCCEEEEEETTTCC-------CCHHHHHT--T
T ss_pred ---------------HHHHHHHHHH----------------HHHhhhcCCCcEEEEeChhhhC-HHHHHHHHHHHhc--C
Confidence 1111111111 0011124678899999997665 3334444444443 2
Q ss_pred CcEEEE-EccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCC---CCccchHHHHHHHHHhcC
Q 041007 323 GSRILV-TRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSS---DYREKFEPIGRRVVGKCK 397 (597)
Q Consensus 323 gs~IIv-TtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~---~~~~~~~~~~~~I~~~~~ 397 (597)
...+|. ||.+.. .. +.. .+...+ .+.+.+++.++...++.+.+...... ....-..+..+.|++.++
T Consensus 134 ~v~lI~att~n~~--~~-----l~~-aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~ 205 (447)
T 3pvs_A 134 TITFIGATTENPS--FE-----LNS-ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVN 205 (447)
T ss_dssp SCEEEEEESSCGG--GS-----SCH-HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHC
T ss_pred ceEEEecCCCCcc--cc-----cCH-HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCC
Confidence 234444 443331 00 000 111111 28899999999999999887431110 111123556788888999
Q ss_pred CchHHHHH
Q 041007 398 GLPFAVKI 405 (597)
Q Consensus 398 GlPLai~~ 405 (597)
|.+-.+.-
T Consensus 206 Gd~R~lln 213 (447)
T 3pvs_A 206 GDARRALN 213 (447)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHH
Confidence 98875543
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=7.2e-07 Score=90.81 Aligned_cols=104 Identities=10% Similarity=0.021 Sum_probs=66.6
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf 369 (597)
+++-++|||++...+ ......+...+.....++.+|++|........ .+... ..+.+.+++.++..+.+
T Consensus 133 ~~~~vlilDE~~~L~-~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~---------~l~sR~~~~~~~~~~~~~~~~~l 202 (354)
T 1sxj_E 133 HRYKCVIINEANSLT-KDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA---------PIKSQCLLIRCPAPSDSEISTIL 202 (354)
T ss_dssp -CCEEEEEECTTSSC-HHHHHHHHHHHHHSTTTEEEEEEESCSCSSCH---------HHHTTSEEEECCCCCHHHHHHHH
T ss_pred CCCeEEEEeCccccC-HHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHH---------HHHhhceEEecCCcCHHHHHHHH
Confidence 467799999998765 55566677766655567788888765421110 11111 23999999999999999
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILG 407 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 407 (597)
...+...+.... ..+.+..|++.++|.+-.+..+.
T Consensus 203 ~~~~~~~~~~~~---~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 203 SDVVTNERIQLE---TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHHHHHTCEEC---CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCC---cHHHHHHHHHHcCCCHHHHHHHH
Confidence 887643221111 02456788999999887654443
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.51 E-value=1.3e-06 Score=85.93 Aligned_cols=196 Identities=15% Similarity=0.076 Sum_probs=101.1
Q ss_pred CCCccccchhhHHHHHHHhhCCCCC-C--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSD-E--ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD 240 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~-~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 240 (597)
....++|.+..+++|...+...... + ...+-...+.+.|+|++|+|||+||+.+++. .... .+.+..+....
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH
Confidence 3456899999999998887532000 0 0000023567999999999999999999873 3222 22233221111
Q ss_pred hhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCC----------CcchH
Q 041007 241 EIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNA----------YPRYW 310 (597)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~----------~~~~~ 310 (597)
. . .......+...+......++.+|+||+++... .....
T Consensus 90 ~------------------------------~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~ 138 (285)
T 3h4m_A 90 K------------------------------F-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQ 138 (285)
T ss_dssp C------------------------------S-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHH
T ss_pred h------------------------------c-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHH
Confidence 0 0 00011112222233334567899999995431 01112
Q ss_pred HHHHHhh---c--CCCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccc
Q 041007 311 EQLMYSL---K--SGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREK 384 (597)
Q Consensus 311 ~~l~~~l---~--~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~ 384 (597)
..+...+ . ....+..||.||..... .+..+.. .... ..+.+.+.+.++-.++|...+..... .....
T Consensus 139 ~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~----l~~~l~~--~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~ 211 (285)
T 3h4m_A 139 RTLMQLLAEMDGFDARGDVKIIGATNRPDI----LDPAILR--PGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN 211 (285)
T ss_dssp HHHHHHHHHHHTTCSSSSEEEEEECSCGGG----BCHHHHS--TTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC
T ss_pred HHHHHHHHHhhCCCCCCCEEEEEeCCCchh----cCHHHcC--CCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC
Confidence 2232222 2 12345667777754310 0000000 0011 12899999999999999888743221 11112
Q ss_pred hHHHHHHHHHhcCC-chHHHHHH
Q 041007 385 FEPIGRRVVGKCKG-LPFAVKIL 406 (597)
Q Consensus 385 ~~~~~~~I~~~~~G-lPLai~~~ 406 (597)
...|++.+.| .|-.|..+
T Consensus 212 ----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 212 ----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp ----HHHHHHHCTTCCHHHHHHH
T ss_pred ----HHHHHHHcCCCCHHHHHHH
Confidence 3667777777 45444433
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.51 E-value=3.3e-06 Score=86.34 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=58.8
Q ss_pred eEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCc---c-cccccccCccccce-eecCCCChHHHHH
Q 041007 293 KVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNM---T-EIGLGEKNGTNMME-IGLGELSEEECRS 367 (597)
Q Consensus 293 r~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~---~-~~~~~~~~~~~~~~-~~l~~Ls~~es~~ 367 (597)
+.+|+||+++..+ ......+...+...... .++++|......-.. . ...+. ..+...+. +.+.+++.++..+
T Consensus 190 ~~vl~IDEi~~l~-~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~-~~l~sR~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 190 PGVLFIDEVHMLD-IESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIP-IDLLDRLLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp BCEEEEESGGGSB-HHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCC-HHHHTTEEEEEECCCCHHHHHH
T ss_pred CceEEEhhccccC-hHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCC-HHHHhhccEEEecCCCHHHHHH
Confidence 4599999998776 55556666666544433 344444321000000 0 00000 01111112 8999999999999
Q ss_pred HHHHHhccCCCCCCccchHHHHHHHHHhcC-CchHHHHH
Q 041007 368 LFRQIAFHGRSSDYREKFEPIGRRVVGKCK-GLPFAVKI 405 (597)
Q Consensus 368 Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~-GlPLai~~ 405 (597)
++...+...... -..+....|++.+. |.|--+..
T Consensus 267 il~~~~~~~~~~----~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 267 ILRIRCEEEDVE----MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHHHTTCC----BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHhcCCCHHHHHH
Confidence 999877532221 12456788888887 77765543
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.48 E-value=5.1e-06 Score=80.50 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=98.6
Q ss_pred CCccccchhhHHHHHHHhhCCCCCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDE--ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
-..++|.+..+++|.+++......+ ...+....+.+.|+|++|+|||+||+.+++ ..... .+.+.++......
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEVI 79 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhhc
Confidence 3568999988887766553211000 000012356789999999999999999988 33222 2334433221110
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC--------------cc
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY--------------PR 308 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~--------------~~ 308 (597)
.......+...+.......+.+|+||+++.... ..
T Consensus 80 -------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~ 128 (262)
T 2qz4_A 80 -------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQ 128 (262)
T ss_dssp -------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CH
T ss_pred -------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHH
Confidence 000111122223333345678999999975410 11
Q ss_pred hHHHHHHhhcC--CCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccch
Q 041007 309 YWEQLMYSLKS--GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREKF 385 (597)
Q Consensus 309 ~~~~l~~~l~~--~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~ 385 (597)
....+...+.. ...+..||.||.... . .+..+. ..... ..+.+.+.+.++-.+++...+..... ....
T Consensus 129 ~l~~ll~~~~~~~~~~~~~vi~~tn~~~-~---ld~~l~--~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~ 199 (262)
T 2qz4_A 129 TLNQLLVEMDGMGTTDHVIVLASTNRAD-I---LDGALM--RPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSS 199 (262)
T ss_dssp HHHHHHHHHHTCCTTCCEEEEEEESCGG-G---GGSGGG--STTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTH
T ss_pred HHHHHHHHhhCcCCCCCEEEEecCCChh-h---cCHHHh--cCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---Ccch
Confidence 12233333332 223445555554331 0 000000 00011 22788999999999999887643221 1112
Q ss_pred HHHHHHHHHhcCCchH-HHHHH
Q 041007 386 EPIGRRVVGKCKGLPF-AVKIL 406 (597)
Q Consensus 386 ~~~~~~I~~~~~GlPL-ai~~~ 406 (597)
......+++.+.|.+- .|..+
T Consensus 200 ~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 200 TFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHH
T ss_pred hhHHHHHHHHCCCCCHHHHHHH
Confidence 2234778888888654 44433
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=2.6e-06 Score=91.21 Aligned_cols=205 Identities=15% Similarity=0.175 Sum_probs=107.3
Q ss_pred CccccchhhHHHHHHHhhCCCCC-----CcCC--CCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSD-----EESG--SKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP 238 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~-----~~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 238 (597)
.+++|++..+++|..++...... ...+ +.+..+.+.|+|++|+|||++|+.+++. . .+ ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCCc
Confidence 56899999999999999751100 0000 0124579999999999999999999883 3 12 2333443332
Q ss_pred CchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC--cchHHHHHHh
Q 041007 239 RDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY--PRYWEQLMYS 316 (597)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~--~~~~~~l~~~ 316 (597)
... ......+...........-...... .....+++.+|+||+++.... ...+..+...
T Consensus 114 ~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~ 174 (516)
T 1sxj_A 114 RSK-----------------TLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF 174 (516)
T ss_dssp CCH-----------------HHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH
T ss_pred chH-----------------HHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHH
Confidence 221 1222222211110000000000000 001235688999999976542 1223445444
Q ss_pred hcCCCCCcEEEEEccCCCCCCCcccccccccCccc-cceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 317 LKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTN-MMEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 317 l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
+... +..||+++..... .... .... ...+.+.+++.++..+++...+...+.... .+....|++.
T Consensus 175 l~~~--~~~iIli~~~~~~-~~l~-------~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~ 240 (516)
T 1sxj_A 175 CRKT--STPLILICNERNL-PKMR-------PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQT 240 (516)
T ss_dssp HHHC--SSCEEEEESCTTS-STTG-------GGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHH
T ss_pred HHhc--CCCEEEEEcCCCC-ccch-------hhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Confidence 4332 2335544443210 0000 1111 123899999999999998877643222111 2346788999
Q ss_pred cCC-chHHHHHHHh
Q 041007 396 CKG-LPFAVKILGS 408 (597)
Q Consensus 396 ~~G-lPLai~~~~~ 408 (597)
++| ++-++..+..
T Consensus 241 s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 241 TRGDIRQVINLLST 254 (516)
T ss_dssp TTTCHHHHHHHHTH
T ss_pred cCCcHHHHHHHHHH
Confidence 999 5555655543
No 31
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=3.6e-06 Score=88.08 Aligned_cols=187 Identities=17% Similarity=0.178 Sum_probs=105.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCC--eeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFD--KRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS 274 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 274 (597)
...+.|+|++|+||||||+.+++ .....++ .++++++ ..+...+...+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~----------------------~~~~~~~~~~~~~~--- 182 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS----------------------EKFLNDLVDSMKEG--- 182 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH----------------------HHHHHHHHHHHHTT---
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH----------------------HHHHHHHHHHHHcc---
Confidence 56899999999999999999998 4444432 2345443 22233333333221
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCCc-chHHHHHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCcccc
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYP-RYWEQLMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM 352 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~-~~~~~l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~ 352 (597)
. ...+...+..+.-+|+|||++..... ...+.+...+.. ...|..||+||........... ..+...
T Consensus 183 --~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~-----~~L~sR 251 (440)
T 2z4s_A 183 --K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ-----DRLVSR 251 (440)
T ss_dssp --C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC-----HHHHHH
T ss_pred --c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH-----HHHHhh
Confidence 0 11223333336779999999765522 233344444432 2456788888876521110000 011111
Q ss_pred ----ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHHhhh------ccC-CCHHHHHH
Q 041007 353 ----MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILGSLL------RFK-TSIKEWQS 421 (597)
Q Consensus 353 ----~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~~~l------~~~-~~~~~w~~ 421 (597)
..+.+.+++.++-.+++.+.+...+.. .+ .+....|++.++|.+--+.-+...+ ... -+.+.+..
T Consensus 252 ~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~-i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~ 327 (440)
T 2z4s_A 252 FQMGLVAKLEPPDEETRKSIARKMLEIEHGE-LP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAIL 327 (440)
T ss_dssp HHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC-CC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHH
T ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 238899999999999998877432211 12 2346788899999886554332211 122 25566666
Q ss_pred HHhh
Q 041007 422 VLDS 425 (597)
Q Consensus 422 ~l~~ 425 (597)
++..
T Consensus 328 ~l~~ 331 (440)
T 2z4s_A 328 LLKD 331 (440)
T ss_dssp HTST
T ss_pred HHHH
Confidence 6654
No 32
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.40 E-value=9.3e-06 Score=81.34 Aligned_cols=193 Identities=16% Similarity=0.094 Sum_probs=103.2
Q ss_pred CCccccchhhHHHHHHHhhCCCC-CC-cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESS-DE-ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~-~~-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
-..++|.+..+++|.+.+..... .+ -.......+.|.|+|++|+|||+||+.+++ .....| +.++++
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchH------
Confidence 35689999999999888731000 00 000012356799999999999999999988 333222 223221
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHH-HHHHHHHHhcCceEEEEEecccCCCCc----------chHH
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMET-VLQYINEFVQGKKVLLVLDDLWWNAYP----------RYWE 311 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~~~~~----------~~~~ 311 (597)
.+.. .. ....+. +...+...-..++.+|+||+++..... ....
T Consensus 86 ----------------~l~~----~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 139 (322)
T 3eie_A 86 ----------------DLVS----KW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKT 139 (322)
T ss_dssp ----------------HHHT----TT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHH
T ss_pred ----------------HHhh----cc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHH
Confidence 1100 00 001111 112222223356789999999654210 1133
Q ss_pred HHHHhhcC---CCCCcEEEEEccCCCCCCCcccccccccCccccc--eeecCCCChHHHHHHHHHHhccCCCCCCccchH
Q 041007 312 QLMYSLKS---GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIAFHGRSSDYREKFE 386 (597)
Q Consensus 312 ~l~~~l~~---~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~ 386 (597)
.+...+.. ...+..||.||...... . . .+.+.. .+.+...+.++-.++|...+....... ..
T Consensus 140 ~ll~~l~~~~~~~~~v~vi~atn~~~~l-d---~-----al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~ 206 (322)
T 3eie_A 140 ELLVQMNGVGNDSQGVLVLGATNIPWQL-D---S-----AIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL----TK 206 (322)
T ss_dssp HHHHHHGGGGTSCCCEEEEEEESCGGGS-C---H-----HHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC----CH
T ss_pred HHHHHhccccccCCceEEEEecCChhhC-C---H-----HHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC----CH
Confidence 34444432 33455556566543100 0 0 111111 278888999999999998874322111 13
Q ss_pred HHHHHHHHhcCC-chHHHHHHH
Q 041007 387 PIGRRVVGKCKG-LPFAVKILG 407 (597)
Q Consensus 387 ~~~~~I~~~~~G-lPLai~~~~ 407 (597)
.....|++.+.| .+-.|..+.
T Consensus 207 ~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 207 EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH
Confidence 456788899987 455555444
No 33
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.39 E-value=7.9e-06 Score=82.32 Aligned_cols=98 Identities=10% Similarity=-0.049 Sum_probs=66.3
Q ss_pred CceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHH
Q 041007 291 GKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLF 369 (597)
Q Consensus 291 ~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf 369 (597)
+++-++|+|+++... ....+.+...+.....++.+|++|.+...... .+...+ .+.+.+++.++..+.+
T Consensus 107 ~~~kvviIdead~l~-~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~---------ti~SRc~~~~~~~~~~~~~~~~L 176 (334)
T 1a5t_A 107 GGAKVVWVTDAALLT-DAAANALLKTLEEPPAETWFFLATREPERLLA---------TLRSRCRLHYLAPPPEQYAVTWL 176 (334)
T ss_dssp SSCEEEEESCGGGBC-HHHHHHHHHHHTSCCTTEEEEEEESCGGGSCH---------HHHTTSEEEECCCCCHHHHHHHH
T ss_pred CCcEEEEECchhhcC-HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcH---------HHhhcceeeeCCCCCHHHHHHHH
Confidence 567899999998776 45566777777666667777777765411100 111122 2999999999999998
Q ss_pred HHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHHH
Q 041007 370 RQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKILG 407 (597)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~~ 407 (597)
.... . . ..+.+..+++.++|.|..+..+.
T Consensus 177 ~~~~---~--~----~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 177 SREV---T--M----SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp HHHC---C--C----CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred HHhc---C--C----CHHHHHHHHHHcCCCHHHHHHHh
Confidence 8775 1 1 13456789999999998665443
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.39 E-value=4.2e-06 Score=84.01 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=100.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
.+++|.+..++.|..++.... ...++.+.|++|+|||++|+.+++. .. ...+.++.+...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~---------~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~~------ 85 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK---------IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDCK------ 85 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC---------CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTCC------
T ss_pred HHHhCcHHHHHHHHHHHHcCC---------CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccccC------
Confidence 568999999999999998432 3467888899999999999999873 32 123344433211
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH--hcCceEEEEEecccCCCCcchHHHHHHhhcCCCCC
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF--VQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEG 323 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~--L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~g 323 (597)
.......+.. .... ..+++.+|+|||++........+.+...+.....+
T Consensus 86 ------------~~~i~~~~~~-----------------~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~ 136 (324)
T 3u61_B 86 ------------IDFVRGPLTN-----------------FASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSN 136 (324)
T ss_dssp ------------HHHHHTHHHH-----------------HHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGG
T ss_pred ------------HHHHHHHHHH-----------------HHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCC
Confidence 1111111111 0110 12468899999996553122444455555444456
Q ss_pred cEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHH-------HHHHhccCCCCCCccchHHHHHHHHHh
Q 041007 324 SRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSL-------FRQIAFHGRSSDYREKFEPIGRRVVGK 395 (597)
Q Consensus 324 s~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~L-------f~~~~~~~~~~~~~~~~~~~~~~I~~~ 395 (597)
..+|+||........ .+...+ .+.+.+++.++-.++ +...+...+... ++ .+....|++.
T Consensus 137 ~~iI~~~n~~~~l~~---------~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~--~~~~~~l~~~ 204 (324)
T 3u61_B 137 CSIIITANNIDGIIK---------PLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-AD--MKVVAALVKK 204 (324)
T ss_dssp CEEEEEESSGGGSCT---------THHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SC--HHHHHHHHHH
T ss_pred cEEEEEeCCccccCH---------HHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-Cc--HHHHHHHHHh
Confidence 788888765421000 111112 289999998874333 222222111111 11 2567788888
Q ss_pred cCCchHHH
Q 041007 396 CKGLPFAV 403 (597)
Q Consensus 396 ~~GlPLai 403 (597)
++|.+-.+
T Consensus 205 ~~gd~R~a 212 (324)
T 3u61_B 205 NFPDFRKT 212 (324)
T ss_dssp TCSCTTHH
T ss_pred CCCCHHHH
Confidence 88876543
No 35
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.37 E-value=9.6e-07 Score=77.35 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=71.1
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhh
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVAR 246 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 246 (597)
.++|+...++++.+.+..... ....|.|+|++|+|||++|+.+++... +...+. + ++++.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~--------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~-v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE--------TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEF-V-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT--------CCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCC-E-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHhC--------CCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCE-E-EECCCCCcc-----
Confidence 578999999999988864432 234678999999999999999987421 112222 3 555432211
Q ss_pred hhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEE
Q 041007 247 DEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRI 326 (597)
Q Consensus 247 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~I 326 (597)
... ...+... +.-+|+||+++... ......+...+.......++
T Consensus 66 -----------------------------~~~---~~~~~~a---~~g~l~ldei~~l~-~~~q~~Ll~~l~~~~~~~~~ 109 (145)
T 3n70_A 66 -----------------------------PQL---NDFIALA---QGGTLVLSHPEHLT-REQQYHLVQLQSQEHRPFRL 109 (145)
T ss_dssp -----------------------------SCH---HHHHHHH---TTSCEEEECGGGSC-HHHHHHHHHHHHSSSCSSCE
T ss_pred -----------------------------hhh---hcHHHHc---CCcEEEEcChHHCC-HHHHHHHHHHHhhcCCCEEE
Confidence 000 0111111 23478999998776 44555666666555666788
Q ss_pred EEEccCC
Q 041007 327 LVTRSGG 333 (597)
Q Consensus 327 IvTtR~~ 333 (597)
|.||...
T Consensus 110 I~~t~~~ 116 (145)
T 3n70_A 110 IGIGDTS 116 (145)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 8888654
No 36
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.36 E-value=1.5e-06 Score=79.23 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~----------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR----------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS----------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC----------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999742 3467899999999999999999873
No 37
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.34 E-value=4.9e-06 Score=82.83 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=90.2
Q ss_pred ccccchhhHHHHHHHhhCCCCC-----CcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 167 EFHGRNAEKQKILQLLKGESSD-----EESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
.++|.+..++.|.+++...... .+.........+.|+|++|+|||+||+.+++............++.++.. ..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD-DL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG-GT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH-Hh
Confidence 4789998888887766421000 00000124567999999999999999988873221111111122332210 00
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCC--------CcchHHHH
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNA--------YPRYWEQL 313 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~--------~~~~~~~l 313 (597)
..... ......+...+... +..+|+||+++... .......+
T Consensus 111 ---------------------------~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~L 159 (309)
T 3syl_A 111 ---------------------------VGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEIL 159 (309)
T ss_dssp ---------------------------CCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHH
T ss_pred ---------------------------hhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHH
Confidence 00000 00011111222221 34599999997441 13344566
Q ss_pred HHhhcCCCCCcEEEEEccCCCCCCCcccccccccCccccc--eeecCCCChHHHHHHHHHHhcc
Q 041007 314 MYSLKSGSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIAFH 375 (597)
Q Consensus 314 ~~~l~~~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~~~ 375 (597)
...+.....+..||+||..... .........+.... .+.+.+++.++..+++...+..
T Consensus 160 l~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 160 LQVMENNRDDLVVILAGYADRM----ENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp HHHHHHCTTTCEEEEEECHHHH----HHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEEEeCChHHH----HHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 6666666667788888753200 00000000222222 2999999999999999887743
No 38
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.31 E-value=1.7e-05 Score=79.48 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=87.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQ 275 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 275 (597)
....+.|+|++|+||||||+.+++. ....-...+++++. .....+...+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~----------------------~~~~~~~~~~~~~---- 87 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD----------------------DFAQAMVEHLKKG---- 87 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH----------------------HHHHHHHHHHHHT----
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH----------------------HHHHHHHHHHHcC----
Confidence 3567999999999999999999983 32221223455432 2222222222110
Q ss_pred hhHHHHHHHHHHHhcCceEEEEEecccCCCCc-chHHHHHHhhcC-CCCCcEEEEEccCCCCCCCcccccccccCcccc-
Q 041007 276 VEMETVLQYINEFVQGKKVLLVLDDLWWNAYP-RYWEQLMYSLKS-GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM- 352 (597)
Q Consensus 276 ~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~-~~~~~l~~~l~~-~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~- 352 (597)
.... +...+. +..+|+|||++..... ...+.+...+.. ...+..||+|+...........- .....
T Consensus 88 -~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~-----~L~sR~ 156 (324)
T 1l8q_A 88 -TINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD-----RLVSRF 156 (324)
T ss_dssp -CHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH-----HHHHHH
T ss_pred -cHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh-----Hhhhcc
Confidence 1111 122222 3679999999765421 222334444322 23456788887654211000000 11111
Q ss_pred ---ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHH
Q 041007 353 ---MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFA 402 (597)
Q Consensus 353 ---~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLa 402 (597)
..+.+.| +.++..+++...+...+.. .+ .+....|++.+ |..-.
T Consensus 157 ~~~~~i~l~~-~~~e~~~il~~~~~~~~~~-l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 157 EGGILVEIEL-DNKTRFKIIKEKLKEFNLE-LR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HTSEEEECCC-CHHHHHHHHHHHHHHTTCC-CC---HHHHHHHHHHC-SSHHH
T ss_pred cCceEEEeCC-CHHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHhC-CCHHH
Confidence 2388999 9999999999887532221 11 45567788888 76643
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.31 E-value=9.4e-06 Score=82.54 Aligned_cols=194 Identities=11% Similarity=0.066 Sum_probs=102.0
Q ss_pred CccccchhhHHHHHHHhhCCCC-CC-cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESS-DE-ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~-~~-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 243 (597)
..++|.+..++.|.+.+...-. .+ -.......+.|.|+|++|+|||+||+.+++. .... .+.++++.....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcc--
Confidence 4689999999999888752100 00 0000124578999999999999999999873 3221 233443321111
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC----------cchHHHH
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY----------PRYWEQL 313 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~----------~~~~~~l 313 (597)
.. ......+...+...-..++.+|+||+++.... ......+
T Consensus 157 ----------------------------~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 207 (357)
T 3d8b_A 157 ----------------------------WV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEF 207 (357)
T ss_dssp ----------------------------ST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHH
T ss_pred ----------------------------cc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHH
Confidence 00 00001111112222235678999999954310 0112334
Q ss_pred HHhhcCC----CCCcEEEEEccCCCCCCCcccccccccCccccc--eeecCCCChHHHHHHHHHHhccCCCCCCccchHH
Q 041007 314 MYSLKSG----SEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEP 387 (597)
Q Consensus 314 ~~~l~~~----~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~ 387 (597)
...+... ..+..||.||..... .+. .+.... .+.+...+.++-.+++...+...... -...
T Consensus 208 L~~l~~~~~~~~~~v~vI~atn~~~~----l~~-----~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~ 274 (357)
T 3d8b_A 208 LVQLDGATTSSEDRILVVGATNRPQE----IDE-----AARRRLVKRLYIPLPEASARKQIVINLMSKEQCC----LSEE 274 (357)
T ss_dssp HHHHHC----CCCCEEEEEEESCGGG----BCH-----HHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC----CCHH
T ss_pred HHHHhcccccCCCCEEEEEecCChhh----CCH-----HHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC----ccHH
Confidence 4444321 234455556543210 000 111111 27888889999888888776432211 1145
Q ss_pred HHHHHHHhcCC-chHHHHHHHh
Q 041007 388 IGRRVVGKCKG-LPFAVKILGS 408 (597)
Q Consensus 388 ~~~~I~~~~~G-lPLai~~~~~ 408 (597)
....|++.+.| .+-.|..+..
T Consensus 275 ~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 275 EIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 67788999988 5666665544
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.28 E-value=1.1e-05 Score=78.78 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=33.9
Q ss_pred CccccchhhHHHHHH-------HhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQ-------LLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~-------~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|.+..++++.. .+.... ......+.|+|++|+|||+||+.+++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~-------~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD-------RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS-------SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC-------CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 346777777666655 332111 13467899999999999999999988
No 41
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=1e-05 Score=81.82 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=102.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhcc-CC-eeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKAN-FD-KRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~ 243 (597)
..++|.+..++.|...+... ..+.+.++|++|+||||+|+.+++. .... +. ...-++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g----------~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~-- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG----------KLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGI-- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT----------CCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSH--
T ss_pred HHhcCcHHHHHHHHHHHhcC----------CCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccH--
Confidence 45789998899998888742 2334899999999999999999873 2211 11 0111211111000
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH---hcCceEEEEEecccCCCCcchHHHHHHhhcCC
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEF---VQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG 320 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~---L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~ 320 (597)
.. .+.++. .+.+. +.+.+-++|+|+++... ....+.+...+...
T Consensus 91 --------------~~-ir~~i~-----------------~~~~~~~~~~~~~~viiiDe~~~l~-~~~~~~L~~~le~~ 137 (340)
T 1sxj_C 91 --------------DV-VRNQIK-----------------DFASTRQIFSKGFKLIILDEADAMT-NAAQNALRRVIERY 137 (340)
T ss_dssp --------------HH-HHTHHH-----------------HHHHBCCSSSCSCEEEEETTGGGSC-HHHHHHHHHHHHHT
T ss_pred --------------HH-HHHHHH-----------------HHHhhcccCCCCceEEEEeCCCCCC-HHHHHHHHHHHhcC
Confidence 11 111111 11100 12346789999997665 44556666666555
Q ss_pred CCCcEEEEEccCCCCCCCcccccccccCccccc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCc
Q 041007 321 SEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGL 399 (597)
Q Consensus 321 ~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~Gl 399 (597)
...+.+|++|........ .+...+ .+.+.+++.++..+.+...+....... ..+..+.|++.++|.
T Consensus 138 ~~~~~~il~~n~~~~i~~---------~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i----~~~~~~~i~~~s~G~ 204 (340)
T 1sxj_C 138 TKNTRFCVLANYAHKLTP---------ALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL----SPNAEKALIELSNGD 204 (340)
T ss_dssp TTTEEEEEEESCGGGSCH---------HHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB----CHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEecCccccch---------hHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCC
Confidence 566777777643310000 111112 288999999999988887663222111 144667889999998
Q ss_pred hHHH
Q 041007 400 PFAV 403 (597)
Q Consensus 400 PLai 403 (597)
+--+
T Consensus 205 ~r~~ 208 (340)
T 1sxj_C 205 MRRV 208 (340)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8644
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.25 E-value=3.4e-05 Score=76.24 Aligned_cols=193 Identities=15% Similarity=0.121 Sum_probs=98.9
Q ss_pred CccccchhhHHHHHHHhhCCCC-CC-cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESS-DE-ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~-~~-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 243 (597)
..++|.+..++.|.+++..... .+ -.+-....+.+.|+|++|+|||+||+.+++. .... .+.++++.....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~~-- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTSK-- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhhc--
Confidence 5689999999999888742100 00 0000113568999999999999999999873 3222 233443322111
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCc----------chHHHH
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYP----------RYWEQL 313 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~----------~~~~~l 313 (597)
... .........+......++.+|+||++...... .....+
T Consensus 94 ----------------------------~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 144 (297)
T 3b9p_A 94 ----------------------------YVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEF 144 (297)
T ss_dssp ----------------------------SCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHH
T ss_pred ----------------------------ccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHH
Confidence 000 00111111122222356789999999654211 111123
Q ss_pred HHhhcCC-----CCCcEEEEEccCCCCCCCcccccccccCccccc--eeecCCCChHHHHHHHHHHhccCCCCCCccchH
Q 041007 314 MYSLKSG-----SEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIAFHGRSSDYREKFE 386 (597)
Q Consensus 314 ~~~l~~~-----~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~ 386 (597)
...+... ..+..||.||....... . .+.... .+.+...+.++-..++...+....... ..
T Consensus 145 l~~l~~~~~~~~~~~v~vi~~tn~~~~l~-~--------~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~ 211 (297)
T 3b9p_A 145 LVEFDGLPGNPDGDRIVVLAATNRPQELD-E--------AALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL----DT 211 (297)
T ss_dssp HHHHHHCC------CEEEEEEESCGGGBC-H--------HHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS----CH
T ss_pred HHHHhcccccCCCCcEEEEeecCChhhCC-H--------HHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC----CH
Confidence 3222211 13345565665431000 0 111111 267777788888888877664322111 13
Q ss_pred HHHHHHHHhcCCchH-HHHHHH
Q 041007 387 PIGRRVVGKCKGLPF-AVKILG 407 (597)
Q Consensus 387 ~~~~~I~~~~~GlPL-ai~~~~ 407 (597)
.....|++.+.|.+- .+..+.
T Consensus 212 ~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 212 EALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH
Confidence 456788899998775 554443
No 43
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.23 E-value=5.1e-05 Score=75.87 Aligned_cols=196 Identities=14% Similarity=0.083 Sum_probs=100.9
Q ss_pred CCccccchhhHHHHHHHhhCCCC-CC-cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESS-DE-ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~-~~-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
-..++|.+..++.|.+.+...-. .+ -.+.....+.|.|+|++|+|||+||+.+++. ... ...+.++.+.-...
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~--~~~~~i~~~~l~~~- 85 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANN--STFFSISSSDLVSK- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTS--CEEEEEECCSSCCS-
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCC--CcEEEEEhHHHHhh-
Confidence 35688999988888876631100 00 0000123578999999999999999999883 211 11223333221110
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC------cch----HHH
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY------PRY----WEQ 312 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~------~~~----~~~ 312 (597)
+ .+ . ....+...+...-..++.+|+||+++.... ... ...
T Consensus 86 --~----------------------~g---~---~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 135 (322)
T 1xwi_A 86 --W----------------------LG---E---SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTE 135 (322)
T ss_dssp --S----------------------CC---S---CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHH
T ss_pred --h----------------------hh---H---HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHH
Confidence 0 00 0 011111112222235788999999965410 011 122
Q ss_pred HHHhhcC---CCCCcEEEEEccCCCCCCCcccccccccCccccc--eeecCCCChHHHHHHHHHHhccCCCCCCccchHH
Q 041007 313 LMYSLKS---GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEP 387 (597)
Q Consensus 313 l~~~l~~---~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~ 387 (597)
+...+.. ...+..||.||.... .... .+.+.. .+.+.+.+.++-.+++...+...... -...
T Consensus 136 ll~~ld~~~~~~~~v~vI~atn~~~-~ld~--------al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----l~~~ 202 (322)
T 1xwi_A 136 FLVQMQGVGVDNDGILVLGATNIPW-VLDS--------AIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS----LTEA 202 (322)
T ss_dssp HHHHHHCSSSCCTTEEEEEEESCTT-TSCH--------HHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC----CCHH
T ss_pred HHHHHhcccccCCCEEEEEecCCcc-cCCH--------HHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC----CCHH
Confidence 3333332 233445555554331 1110 111111 27888888888889998876422211 1134
Q ss_pred HHHHHHHhcCCc-hHHHHHHHh
Q 041007 388 IGRRVVGKCKGL-PFAVKILGS 408 (597)
Q Consensus 388 ~~~~I~~~~~Gl-PLai~~~~~ 408 (597)
....|++.+.|. +-.|..+..
T Consensus 203 ~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 203 DFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 568899999986 544655543
No 44
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.19 E-value=3.2e-05 Score=79.59 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=98.8
Q ss_pred CCccccchhhHHHHHHHhhCCCCC-C-cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSD-E-ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~-~-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
-..++|.+..++.|..++...... + -.......+.|.|+|++|+|||+||+.+++ +.... .+.++++.....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNAT---FFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCc---EEEeeHHHhhcc-
Confidence 356899999999999888321000 0 000011357899999999999999999977 32221 233333221110
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC----------cchHHH
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY----------PRYWEQ 312 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~----------~~~~~~ 312 (597)
. .+ .....+...+...-...+.+|+||+++.... ......
T Consensus 188 -----------------~-------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ 237 (389)
T 3vfd_A 188 -----------------Y-------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTE 237 (389)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHH
T ss_pred -----------------c-------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHH
Confidence 0 00 0001111122222234568999999964310 011122
Q ss_pred HHHhhcC----CCCCcEEEEEccCCCCCCCcccccccccCccccc--eeecCCCChHHHHHHHHHHhccCCCCCCccchH
Q 041007 313 LMYSLKS----GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIAFHGRSSDYREKFE 386 (597)
Q Consensus 313 l~~~l~~----~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~ 386 (597)
+...+.. ......||.||.... .. +. .+...+ .+.+...+.++-.+++...+...... -..
T Consensus 238 ll~~l~~~~~~~~~~v~vI~atn~~~-~l---~~-----~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~ 304 (389)
T 3vfd_A 238 FLIEFDGVQSAGDDRVLVMGATNRPQ-EL---DE-----AVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP----LTQ 304 (389)
T ss_dssp HHHHHHHHC-----CEEEEEEESCGG-GC---CH-----HHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC----SCH
T ss_pred HHHHhhcccccCCCCEEEEEecCCch-hc---CH-----HHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC----CCH
Confidence 2222221 123345555554321 00 00 111112 27888899999999998877432211 123
Q ss_pred HHHHHHHHhcCCchH-HHHHHH
Q 041007 387 PIGRRVVGKCKGLPF-AVKILG 407 (597)
Q Consensus 387 ~~~~~I~~~~~GlPL-ai~~~~ 407 (597)
+....|++.+.|..- .|..+.
T Consensus 305 ~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 305 KELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH
Confidence 456788888988543 555543
No 45
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.17 E-value=2.5e-05 Score=79.27 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=99.5
Q ss_pred CccccchhhHHHHHHHhhCCCC-CC-cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESS-DE-ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~-~~-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 243 (597)
..++|.+..++.|...+..... .+ -.......+.|.|+|++|+|||+||+.+++. ....| +.++++
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------- 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------- 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH-------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH-------
Confidence 4689999999999887731100 00 0000123456889999999999999999983 32222 222221
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCc----------chHHHH
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYP----------RYWEQL 313 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~----------~~~~~l 313 (597)
.+.. ...+ .....+...+......++.+|+||+++..... .....+
T Consensus 119 ---------------~l~~----~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 174 (355)
T 2qp9_X 119 ---------------DLVS----KWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTEL 174 (355)
T ss_dssp ---------------HHHS----CC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHH
T ss_pred ---------------HHhh----hhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHH
Confidence 1110 0000 00111111222222357899999999754311 012333
Q ss_pred HHhhcC---CCCCcEEEEEccCCCCCCCcccccccccCccccc--eeecCCCChHHHHHHHHHHhccCCCCCCccchHHH
Q 041007 314 MYSLKS---GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPI 388 (597)
Q Consensus 314 ~~~l~~---~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~ 388 (597)
...+.. ...+..||.||..... . +. .+.+.. .+.+.+.+.++-.+++...+....... ....
T Consensus 175 l~~l~~~~~~~~~v~vI~atn~~~~-l---d~-----al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~----~~~~ 241 (355)
T 2qp9_X 175 LVQMNGVGNDSQGVLVLGATNIPWQ-L---DS-----AIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL----TKED 241 (355)
T ss_dssp HHHHHHCC---CCEEEEEEESCGGG-S---CH-----HHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC----CHHH
T ss_pred HHHhhcccccCCCeEEEeecCCccc-C---CH-----HHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC----CHHH
Confidence 333322 2334555555543310 0 00 111111 277888899999999988774322111 1345
Q ss_pred HHHHHHhcCC-chHHHHHHH
Q 041007 389 GRRVVGKCKG-LPFAVKILG 407 (597)
Q Consensus 389 ~~~I~~~~~G-lPLai~~~~ 407 (597)
...|++.+.| .+-.|..+.
T Consensus 242 l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 242 YRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHH
Confidence 6788999988 454555543
No 46
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.10 E-value=3.2e-06 Score=73.77 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=35.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++|++..++++.+.+..... ....|.|+|++|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~--------~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK--------RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT--------CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC--------CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3578999999999888764322 2345889999999999999999884
No 47
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.08 E-value=1e-05 Score=73.57 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=31.3
Q ss_pred chhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 171 RNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 171 R~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....++.+..++..... .....+.|+|++|+|||||++.+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~-------~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP-------EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHSCCG-------GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-------cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44555566666654332 23578999999999999999999884
No 48
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.01 E-value=1.2e-05 Score=74.50 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=35.8
Q ss_pred hhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 173 AEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 173 ~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
..++.+.+++..... ....+.+.|+|++|+|||+||+.+++ ........++|+++
T Consensus 36 ~~~~~~~~~~~~~~~------~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 36 KAIRFAERFVAEYEP------GKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHCCS------SCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHhhh------ccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 344556666654321 11237899999999999999999998 34333344566653
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.00 E-value=1.6e-05 Score=90.53 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.+++++.+.|... ....+.|+|++|+|||+||+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~----------~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR----------TKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS----------SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcC----------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999743 2345789999999999999999883
No 50
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00019 Score=72.76 Aligned_cols=187 Identities=17% Similarity=0.106 Sum_probs=95.3
Q ss_pred CccccchhhHHHHHHHhhCCC-CCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNAEKQKILQLLKGES-SDE--ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~-~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
..+.|-++.+++|.+.+.-.- ..+ ..-+-..++-|.++||+|+|||.||+++++ .....| +.++.+.-...
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~sk- 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQK- 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSCS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhcc-
Confidence 456789988888877664210 000 000012456789999999999999999998 444333 33433321111
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC-------c--c----h
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY-------P--R----Y 309 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~-------~--~----~ 309 (597)
. .......+...+...-...+++|++|+++.... . . .
T Consensus 222 -----------------------------~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~ 271 (405)
T 4b4t_J 222 -----------------------------Y-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRT 271 (405)
T ss_dssp -----------------------------S-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHH
T ss_pred -----------------------------c-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHH
Confidence 0 001111122222222346789999999864310 0 0 1
Q ss_pred HHHHHHhhcC--CCCCcEEEEEccCCCCCCCcccccccccCcccc--ceeecCCCChHHHHHHHHHHhccCCCCCCccch
Q 041007 310 WEQLMYSLKS--GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM--MEIGLGELSEEECRSLFRQIAFHGRSSDYREKF 385 (597)
Q Consensus 310 ~~~l~~~l~~--~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~ 385 (597)
...++..+.. ...+..||.||... ...+.. +. . .+. ..+.+...+.++-.++|..+...... ....+
T Consensus 272 l~~lL~~lDg~~~~~~V~vIaATNrp-d~LDpA---ll--R-pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd- 342 (405)
T 4b4t_J 272 MLELLNQLDGFETSKNIKIIMATNRL-DILDPA---LL--R-PGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN- 342 (405)
T ss_dssp HHHHHHHHHTTTCCCCEEEEEEESCS-SSSCHH---HH--S-TTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC-
T ss_pred HHHHHHhhhccCCCCCeEEEeccCCh-hhCCHh---Hc--C-CCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC-
Confidence 2223333332 23344455565444 111100 00 0 011 12888888888888888877632211 11122
Q ss_pred HHHHHHHHHhcCCch
Q 041007 386 EPIGRRVVGKCKGLP 400 (597)
Q Consensus 386 ~~~~~~I~~~~~GlP 400 (597)
...|++.|.|.-
T Consensus 343 ---l~~lA~~t~G~S 354 (405)
T 4b4t_J 343 ---LRKVAEKMNGCS 354 (405)
T ss_dssp ---HHHHHHHCCSCC
T ss_pred ---HHHHHHHCCCCC
Confidence 366778887754
No 51
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.99 E-value=0.00011 Score=76.95 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=99.5
Q ss_pred CCccccchhhHHHHHHHhhCC---CCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 165 PLEFHGRNAEKQKILQLLKGE---SSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~---~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
-..++|.+..++.|...+... ..-- .+.....+.|.|+|++|+|||+||+.+++. .. ...++.++...-.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~-~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~~l~ 205 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLF-TGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSDLV 205 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTT-SGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHh-hccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHHHHH
Confidence 356899999999998877311 0000 000123578999999999999999999883 21 1123333321100
Q ss_pred hhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC------cchH----H
Q 041007 242 IRVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY------PRYW----E 311 (597)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~------~~~~----~ 311 (597)
... .+.. ......+. ...-..++.+|+||+++.... .... .
T Consensus 206 --------------------~~~---~g~~---~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 256 (444)
T 2zan_A 206 --------------------SKW---LGES---EKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKT 256 (444)
T ss_dssp -----------------------------C---CCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHH
T ss_pred --------------------hhh---cchH---HHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHH
Confidence 000 0100 11111111 222235678999999975411 1111 2
Q ss_pred HHHHhhcC---CCCCcEEEEEccCCCCCCCcccccccccCccccc--eeecCCCChHHHHHHHHHHhccCCCCCCccchH
Q 041007 312 QLMYSLKS---GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIAFHGRSSDYREKFE 386 (597)
Q Consensus 312 ~l~~~l~~---~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~ 386 (597)
.+...+.. ...+..||.||.... ..+. .+.+.. .+.+...+.++-..+|...+..... .-..
T Consensus 257 ~lL~~l~~~~~~~~~v~vI~atn~~~----~ld~-----al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~ 323 (444)
T 2zan_A 257 EFLVQMQGVGVDNDGILVLGATNIPW----VLDS-----AIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTE 323 (444)
T ss_dssp HHHTTTTCSSCCCSSCEEEEEESCGG----GSCH-----HHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCH
T ss_pred HHHHHHhCcccCCCCEEEEecCCCcc----ccCH-----HHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCH
Confidence 23333322 134555666664331 0000 111112 2778888888888888887642211 1113
Q ss_pred HHHHHHHHhcCC-chHHHHHHH
Q 041007 387 PIGRRVVGKCKG-LPFAVKILG 407 (597)
Q Consensus 387 ~~~~~I~~~~~G-lPLai~~~~ 407 (597)
.....|++.+.| .+-.|..+.
T Consensus 324 ~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 324 ADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH
Confidence 456788999988 454555543
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.98 E-value=0.00012 Score=72.42 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=97.5
Q ss_pred CccccchhhHHHHHHHhhCCCCC-C--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSD-E--ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~-~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
..++|.+..+++|.+++...-.. + ..-.-...+.|.|+|++|+|||+||+.+++. .... ++.+..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~~----- 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG----- 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEECH-----
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEEh-----
Confidence 46889999988888877531000 0 0000123568999999999999999999883 3222 122211
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCC-------------Ccch
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNA-------------YPRY 309 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~-------------~~~~ 309 (597)
..+..... +.. ... +...+.......+.+|+||++.... ....
T Consensus 83 ---------------~~l~~~~~---g~~---~~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ 138 (301)
T 3cf0_A 83 ---------------PELLTMWF---GES---EAN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 138 (301)
T ss_dssp ---------------HHHHHHHH---TTC---TTH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHH
T ss_pred ---------------HHHHhhhc---Cch---HHH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHH
Confidence 22222111 111 111 1222333334568999999995311 0112
Q ss_pred HHHHHHhhcC--CCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccchH
Q 041007 310 WEQLMYSLKS--GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFE 386 (597)
Q Consensus 310 ~~~l~~~l~~--~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~ 386 (597)
...+...+.. ...+..||.||..... .. ..+. ..... ..+.+.+.+.++-.+++...+..... .....
T Consensus 139 ~~~lL~~l~~~~~~~~v~vi~atn~~~~-ld---~al~--r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~-- 209 (301)
T 3cf0_A 139 INQILTEMDGMSTKKNVFIIGATNRPDI-ID---PAIL--RPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD-- 209 (301)
T ss_dssp HHHHHHHHHSSCTTSSEEEEEEESCGGG-SC---GGGG--STTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC--
T ss_pred HHHHHHHhhcccCCCCEEEEEecCCccc-cC---hHHh--cCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch--
Confidence 3444444432 2334556666644310 00 0000 00011 12888999999888888877643221 11122
Q ss_pred HHHHHHHHhcCCchHH
Q 041007 387 PIGRRVVGKCKGLPFA 402 (597)
Q Consensus 387 ~~~~~I~~~~~GlPLa 402 (597)
...+++.+.|.|-+
T Consensus 210 --~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 210 --LEFLAKMTNGFSGA 223 (301)
T ss_dssp --HHHHHHTCSSCCHH
T ss_pred --HHHHHHHcCCCCHH
Confidence 24566677777654
No 53
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.0003 Score=72.55 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=96.0
Q ss_pred CccccchhhHHHHHHHhhCCCC-CC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNAEKQKILQLLKGESS-DE--ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~-~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
..+.|-++.+++|.+.+.-.-. .+ ..-+-..++-|.++||+|+|||.||+.+++ .....| +.++.+.-.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~sk- 254 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVDK- 254 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCCS-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhccc-
Confidence 4567899888888776642100 00 000013467899999999999999999998 343332 33443322111
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC---------cc----h
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY---------PR----Y 309 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~---------~~----~ 309 (597)
. .......+...+...-...+++|++|+++..-. .. .
T Consensus 255 -----------------------------~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~ 304 (437)
T 4b4t_L 255 -----------------------------Y-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRT 304 (437)
T ss_dssp -----------------------------S-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHH
T ss_pred -----------------------------c-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHH
Confidence 0 000111112222222346789999999863210 01 1
Q ss_pred HHHHHHhhcC--CCCCcEEEEEccCCCCCCCcccccccccCccc--cc--eeecCCCChHHHHHHHHHHhccCCCCCCcc
Q 041007 310 WEQLMYSLKS--GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTN--MM--EIGLGELSEEECRSLFRQIAFHGRSSDYRE 383 (597)
Q Consensus 310 ~~~l~~~l~~--~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~--~~--~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~ 383 (597)
...++..+.. ...+..||.||..... .+. .+.+ .. .+.+...+.++-.++|..+...-.. ....
T Consensus 305 l~~lL~~lDg~~~~~~vivI~ATNrp~~-LDp--------AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~ 374 (437)
T 4b4t_L 305 LMELLTQMDGFDNLGQTKIIMATNRPDT-LDP--------ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEF 374 (437)
T ss_dssp HHHHHHHHHSSSCTTSSEEEEEESSTTS-SCT--------TTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCC
T ss_pred HHHHHHHhhcccCCCCeEEEEecCCchh-hCH--------HHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-Cccc
Confidence 2233444432 2345566666654411 110 1111 11 1778777777777888776643221 1112
Q ss_pred chHHHHHHHHHhcCCch
Q 041007 384 KFEPIGRRVVGKCKGLP 400 (597)
Q Consensus 384 ~~~~~~~~I~~~~~GlP 400 (597)
+ ...|++.+.|.-
T Consensus 375 d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 375 D----FEAAVKMSDGFN 387 (437)
T ss_dssp C----HHHHHHTCCSCC
T ss_pred C----HHHHHHhCCCCC
Confidence 2 366778887754
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.97 E-value=0.0012 Score=66.28 Aligned_cols=49 Identities=29% Similarity=0.401 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|.+..++.+...+..... +...+..+.|+|++|+||||||+.+++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-----~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-----RGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-----HTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-----cCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4578988888877766653200 011346799999999999999999988
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.97 E-value=2e-05 Score=83.07 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++||+.+++++...|... ....+.|+|++|+|||+||+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~----------~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR----------TKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS----------SSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhcc----------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999743 235678999999999999999987
No 56
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00012 Score=75.22 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHhhCCCC-CC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESS-DE--ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~-~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+.|-++.+++|.+.+...-. .+ ..-+-..++-|.++||+|+|||+||+++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4678999998888776642100 00 000012467799999999999999999998
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.92 E-value=4.7e-05 Score=80.36 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=100.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCc---CCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEE---SGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
..++|.+..+++|.+++........ .-+....+-|.|+|++|+|||+||+.+++ ..... .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~---fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSE---EEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCC---EEEEEchH-----
Confidence 4589999999999888763200000 00001346799999999999999999987 33222 23333211
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC----------cchHHH
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY----------PRYWEQ 312 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~----------~~~~~~ 312 (597)
+. ..+. ......+...+.....+++.+|+||+++.... ......
T Consensus 274 -----------------l~----~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~ 327 (489)
T 3hu3_A 274 -----------------IM----SKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQ 327 (489)
T ss_dssp -----------------HH----TSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHH
T ss_pred -----------------hh----hhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHH
Confidence 11 0000 01112223334444456788999999943211 012233
Q ss_pred HHHhhcC--CCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccchHHHH
Q 041007 313 LMYSLKS--GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIG 389 (597)
Q Consensus 313 l~~~l~~--~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~ 389 (597)
+...+.. ...+..||.||...... +..+. ..... ..+.+.+.+.++-.++|...+..... ..... .
T Consensus 328 LL~~ld~~~~~~~v~vIaaTn~~~~L----d~al~--r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l 396 (489)
T 3hu3_A 328 LLTLMDGLKQRAHVIVMAATNRPNSI----DPALR--RFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----L 396 (489)
T ss_dssp HHHHHHHSCTTSCEEEEEEESCGGGB----CGGGG--STTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----H
T ss_pred HHHHhhccccCCceEEEEecCCcccc----CHHHh--CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----H
Confidence 4444442 23344555555543110 00000 00011 12889999999999999887642221 11112 3
Q ss_pred HHHHHhcCCc-hHHHHHH
Q 041007 390 RRVVGKCKGL-PFAVKIL 406 (597)
Q Consensus 390 ~~I~~~~~Gl-PLai~~~ 406 (597)
.++++.+.|. +-.|..+
T Consensus 397 ~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 397 EQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHccCCcHHHHHHH
Confidence 5677777774 5445444
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.92 E-value=3.7e-05 Score=76.39 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=43.3
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
.++|.+..++.+...+......- ..+......+.|+|++|+|||++|+.+++. ....-...+.+.++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL-KDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC-SCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC-CCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccc
Confidence 47899999888888876431100 001122357999999999999999999883 322222344555543
No 59
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.90 E-value=0.00019 Score=69.18 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=35.0
Q ss_pred CCccccchhhHHHHHHHhhCCCCCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDE--ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
-..++|.+..++++.+.+......+ ..-+....+-+.|+|++|+||||||+.+++
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3568899888877765543210000 000001234689999999999999999987
No 60
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=6.1e-05 Score=74.43 Aligned_cols=151 Identities=10% Similarity=0.015 Sum_probs=89.8
Q ss_pred cchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChh-hhccCCeeEEEEecCCCchhhhhhhh
Q 041007 170 GRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSD-VKANFDKRIWVSASYPRDEIRVARDE 248 (597)
Q Consensus 170 GR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~~ 248 (597)
|-++.++.|...+... ..+...++|++|+|||++|..+.+... ....+....++..+.....
T Consensus 1 g~~~~~~~L~~~i~~~----------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~------- 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS----------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIG------- 63 (305)
T ss_dssp ---CHHHHHHHHHHTC----------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBC-------
T ss_pred ChHHHHHHHHHHHHCC----------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCC-------
Confidence 3455667777777632 357899999999999999999976310 1111222344433211111
Q ss_pred hhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEE
Q 041007 249 ISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILV 328 (597)
Q Consensus 249 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIv 328 (597)
.+..+.+.+.+.... ..+++-++|+|+++... ....+.+...+...++.+.+|+
T Consensus 64 ---------id~ir~li~~~~~~p----------------~~~~~kvviIdead~lt-~~a~naLLk~LEep~~~t~fIl 117 (305)
T 2gno_A 64 ---------IDDIRTIKDFLNYSP----------------ELYTRKYVIVHDCERMT-QQAANAFLKALEEPPEYAVIVL 117 (305)
T ss_dssp ---------HHHHHHHHHHHTSCC----------------SSSSSEEEEETTGGGBC-HHHHHHTHHHHHSCCTTEEEEE
T ss_pred ---------HHHHHHHHHHHhhcc----------------ccCCceEEEeccHHHhC-HHHHHHHHHHHhCCCCCeEEEE
Confidence 122222333222110 12456799999998776 5567778877877777888888
Q ss_pred EccCCCCCCCcccccccccCccccceeecCCCChHHHHHHHHHHh
Q 041007 329 TRSGGKNGTNMTEIGLGEKNGTNMMEIGLGELSEEECRSLFRQIA 373 (597)
Q Consensus 329 TtR~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ls~~es~~Lf~~~~ 373 (597)
+|.+...... .+... .+++.++++++..+.+.+.+
T Consensus 118 ~t~~~~kl~~---------tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 118 NTRRWHYLLP---------TIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EESCGGGSCH---------HHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred EECChHhChH---------HHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 7754411110 11122 58999999999999998876
No 61
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00046 Score=71.07 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHhhCCC-CCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGES-SDE--ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~-~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+.|-++.+++|.+.+.-.- ..+ ..-+-..++-|.++|++|+|||.||+.+++
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 357789988888877653100 000 000013567899999999999999999998
No 62
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00035 Score=71.91 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHhhCCC-CCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGES-SDE--ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~-~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+.|-++.+++|.+.+...- ..+ ..-+-+.++-|.++||+|+|||.||+++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 457899999988877653210 000 000013467899999999999999999998
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.79 E-value=0.00028 Score=79.32 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.+++++.+.|... ....+.|+|++|+|||++|+.+++.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~----------~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR----------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS----------SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc----------CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999743 3456789999999999999999873
No 64
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.78 E-value=0.00056 Score=71.57 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=94.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDE--ESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIR 243 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 243 (597)
..++|.++.++++.+.+....... ..-+-..++-|.|+|++|+|||+||+.+++ +....| +.++++.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH--
Confidence 458899988777766553211000 000001234588999999999999999988 332222 23333321111
Q ss_pred hhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCc-------------chH
Q 041007 244 VARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYP-------------RYW 310 (597)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~-------------~~~ 310 (597)
+ .......+...+.......+.+|+||+++..... ...
T Consensus 89 -~----------------------------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l 139 (476)
T 2ce7_A 89 -F----------------------------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTL 139 (476)
T ss_dssp -C----------------------------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHH
T ss_pred -H----------------------------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHH
Confidence 0 0001112223344444567899999999653210 122
Q ss_pred HHHHHhhcC--CCCCcEEEEEccCCCCCCCcccccccccCcccc-ceeecCCCChHHHHHHHHHHhccCCCCCCccchHH
Q 041007 311 EQLMYSLKS--GSEGSRILVTRSGGKNGTNMTEIGLGEKNGTNM-MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFEP 387 (597)
Q Consensus 311 ~~l~~~l~~--~~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~ 387 (597)
..+...+.. ...+..||.||..... .. ..+.. ..+. ..+.+.+.+.++-.+++..++..... .....
T Consensus 140 ~~LL~~ld~~~~~~~viVIaaTn~~~~-Ld---~allR--~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~--- 209 (476)
T 2ce7_A 140 NQLLVEMDGFDSKEGIIVMAATNRPDI-LD---PALLR--PGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN--- 209 (476)
T ss_dssp HHHHHHHHHSCGGGTEEEEEEESCGGG-SC---GGGGS--TTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC---
T ss_pred HHHHHHHhccCCCCCEEEEEecCChhh-hc---hhhcc--cCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh---
Confidence 333333322 1234556666554311 00 00000 0011 12778888888777888776632211 11111
Q ss_pred HHHHHHHhcCCch
Q 041007 388 IGRRVVGKCKGLP 400 (597)
Q Consensus 388 ~~~~I~~~~~GlP 400 (597)
...|++.+.|..
T Consensus 210 -l~~la~~t~G~s 221 (476)
T 2ce7_A 210 -LEIIAKRTPGFV 221 (476)
T ss_dssp -HHHHHHTCTTCC
T ss_pred -HHHHHHhcCCCc
Confidence 345788888877
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.76 E-value=5.9e-05 Score=73.12 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++|++..+.++.+.+..... ....|.|+|++|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~--------~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP--------LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT--------SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC--------CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4588999999988877764332 2356889999999999999999874
No 66
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00097 Score=67.96 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHhhCCC-CCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGES-SDE--ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~-~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+.|-++.+++|.+.+...- ..+ ..-+-+.++-|.++||+|+|||.||+++++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 456789988888877664210 000 000013467899999999999999999998
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.72 E-value=0.00043 Score=68.46 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHhhCC--CC--CCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGE--SS--DEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~--~~--~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|++..++.+...+... .. ............+.|+|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45889999999998877531 00 00000001345788999999999999999987
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.70 E-value=0.00082 Score=70.55 Aligned_cols=101 Identities=11% Similarity=-0.000 Sum_probs=58.9
Q ss_pred EEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEc---------cCCCCCCCcccccccccCccccce-eecCCCChH
Q 041007 294 VLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTR---------SGGKNGTNMTEIGLGEKNGTNMME-IGLGELSEE 363 (597)
Q Consensus 294 ~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTt---------R~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Ls~~ 363 (597)
-++++|+++..+ ....+.+...+...... .+|+.| .+....+. .++. .+...+. +.+.+++.+
T Consensus 297 ~VliIDEa~~l~-~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~----~l~~-~i~sR~~~~~~~~~~~~ 369 (456)
T 2c9o_A 297 GVLFVDEVHMLD-IECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPH----GIPL-DLLDRVMIIRTMLYTPQ 369 (456)
T ss_dssp CEEEEESGGGCB-HHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEET----TCCH-HHHTTEEEEECCCCCHH
T ss_pred eEEEEechhhcC-HHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccc----cCCh-hHHhhcceeeCCCCCHH
Confidence 399999998876 66777777777655545 344344 11000000 0000 1112222 899999999
Q ss_pred HHHHHHHHHhccCCCCCCccchHHHHHHHHHhc-CCchHHHHH
Q 041007 364 ECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKC-KGLPFAVKI 405 (597)
Q Consensus 364 es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~-~GlPLai~~ 405 (597)
+..+++...+...... -..+....|++.+ .|.|.....
T Consensus 370 e~~~iL~~~~~~~~~~----~~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 370 EMKQIIKIRAQTEGIN----ISEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHHHHHHHHTCC----BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC----CCHHHHHHHHHHccCCCHHHHHH
Confidence 9999998876321111 1144567788888 787765443
No 69
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.63 E-value=5.5e-05 Score=74.93 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~--------~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP--------SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS--------TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC--------CCCcEEEECCCCchHHHHHHHHHH
Confidence 3588999999999888875432 345688999999999999999987
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.61 E-value=0.00013 Score=81.94 Aligned_cols=45 Identities=29% Similarity=0.446 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++||+.+++++...|... ...-+.|+|++|+|||++|+.+++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~----------~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR----------TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS----------SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCC----------CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999743 2356889999999999999999873
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.58 E-value=0.00023 Score=79.90 Aligned_cols=168 Identities=14% Similarity=0.212 Sum_probs=89.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhh
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVA 245 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 245 (597)
..++|.+..++.+...+........ .++.....+.++|++|+|||+||+.+++. ....-...+.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~-~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~~- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK-DPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHST- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS-CTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC-CCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccccc-
Confidence 4588999999988888874332110 01122337999999999999999999883 3222233455555433222000
Q ss_pred hhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-----
Q 041007 246 RDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG----- 320 (597)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~----- 320 (597)
. ...+...++ .....+|+||++.... ......+...+..+
T Consensus 567 ------------~-------------------~~~l~~~~~---~~~~~vl~lDEi~~~~-~~~~~~Ll~~le~g~~~~~ 611 (758)
T 3pxi_A 567 ------------S-------------------GGQLTEKVR---RKPYSVVLLDAIEKAH-PDVFNILLQVLEDGRLTDS 611 (758)
T ss_dssp ------------C----------------------CHHHHH---HCSSSEEEEECGGGSC-HHHHHHHHHHHHHSBCC--
T ss_pred ------------c-------------------cchhhHHHH---hCCCeEEEEeCccccC-HHHHHHHHHHhccCeEEcC
Confidence 0 001111111 1234599999997765 55666666666432
Q ss_pred ------CCCcEEEEEccCCCCCCCcc----cccccccCccccc--eeecCCCChHHHHHHHHHHh
Q 041007 321 ------SEGSRILVTRSGGKNGTNMT----EIGLGEKNGTNMM--EIGLGELSEEECRSLFRQIA 373 (597)
Q Consensus 321 ------~~gs~IIvTtR~~~~~~~~~----~~~~~~~~~~~~~--~~~l~~Ls~~es~~Lf~~~~ 373 (597)
..+..||+||.......... ...+ .....+.. .+.+.|++.++..+++...+
T Consensus 612 ~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f-~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 612 KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAF-RPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ---CCBCTTCEEEEEESSSTTCCHHHHHHHHHHS-CHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhC-CHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 23568888887432110000 0000 00111111 27888888888777766544
No 72
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.51 E-value=3.1e-05 Score=75.23 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCc--CCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDEE--SGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~~--~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
-..++|.+..++.|.+.+......+. .-.....+.+.|+|++|+|||+||+.+++
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 35689999888888776642100000 00001234478999999999999999988
No 73
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.47 E-value=0.00067 Score=63.34 Aligned_cols=98 Identities=18% Similarity=0.065 Sum_probs=52.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCC-CCc
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGS-VSS 274 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~-~~~ 274 (597)
...++.|.|++|+|||||+..++. ..-..++|++........... ...... ..... .++..+... ...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~-~~~~~----~~~~~~~~~~~~~ 87 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETR-GLNPE----EALSRFILFTPSD 87 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTT-TCCHH----HHHHHEEEECCTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhc-CCChH----HHhhcEEEEecCC
Confidence 456999999999999999999976 112457788766533331110 000000 00001 122222211 112
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCC
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWN 304 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~ 304 (597)
..+.......+...+..+.-+||||.+...
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 88 FKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp TSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 222334455555555445789999998544
No 74
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.45 E-value=0.00011 Score=64.22 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+.|+|+.|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999884
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.42 E-value=0.0013 Score=72.92 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=95.7
Q ss_pred CccccchhhHHHHHHHhhC---CCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchh
Q 041007 166 LEFHGRNAEKQKILQLLKG---ESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEI 242 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~---~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 242 (597)
..+.|-++.+++|.+++.- ...--..-+-..++-|.++|++|+|||+||+.+++. ...+| +.++.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 4467888888888776531 110000001234678999999999999999999994 33332 3333211
Q ss_pred hhhhhhhhhcccchHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHhcCceEEEEEecccCCCC------cc----hHHH
Q 041007 243 RVARDEISVARDRDEIRVAKAILESLKGSVSSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAY------PR----YWEQ 312 (597)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~------~~----~~~~ 312 (597)
+. .. ........+...+.......+.+|+||+++..-. .. ....
T Consensus 274 -----------------l~--------sk-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~ 327 (806)
T 3cf2_A 274 -----------------IM--------SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQ 327 (806)
T ss_dssp -----------------HH--------SS-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHH
T ss_pred -----------------hh--------cc-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHH
Confidence 00 00 0111222333344444457799999999864310 11 1222
Q ss_pred HHHhhcCC--CCCcEEEEEccCCCCCCCcccccccccCccc--c--ceeecCCCChHHHHHHHHHHhccCCCCCCccchH
Q 041007 313 LMYSLKSG--SEGSRILVTRSGGKNGTNMTEIGLGEKNGTN--M--MEIGLGELSEEECRSLFRQIAFHGRSSDYREKFE 386 (597)
Q Consensus 313 l~~~l~~~--~~gs~IIvTtR~~~~~~~~~~~~~~~~~~~~--~--~~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~ 386 (597)
+...+... ..+..||.||........ .+.+ . ..+++...+.++=.++|..+...... ....+
T Consensus 328 LL~~mdg~~~~~~V~VIaaTN~~d~LD~---------ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd-- 395 (806)
T 3cf2_A 328 LLTLMDGLKQRAHVIVMAATNRPNSIDP---------ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD-- 395 (806)
T ss_dssp HHTHHHHCCGGGCEEEEEECSSTTTSCT---------TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC--
T ss_pred HHHHHhcccccCCEEEEEecCChhhcCH---------HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC--
Confidence 33333221 223445555544311110 1111 1 12888888888888888766532111 11122
Q ss_pred HHHHHHHHhcCCch
Q 041007 387 PIGRRVVGKCKGLP 400 (597)
Q Consensus 387 ~~~~~I~~~~~GlP 400 (597)
...|++++.|.-
T Consensus 396 --l~~lA~~T~Gfs 407 (806)
T 3cf2_A 396 --LEQVANETHGHV 407 (806)
T ss_dssp --HHHHHHHCCSCC
T ss_pred --HHHHHHhcCCCC
Confidence 356788888764
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.31 E-value=0.00043 Score=68.05 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.++.+.|+|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999998
No 77
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.31 E-value=0.00052 Score=68.78 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|++..++.+...+.. ...+.|+|++|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~------------~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT------------GGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH------------TCCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHc------------CCeEEEECCCCCcHHHHHHHHHH
Confidence 3578999999998888863 23688999999999999999987
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.28 E-value=0.00058 Score=77.62 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=37.8
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.++|.+..++.+...+......- ..++.....+.|+|++|+|||++|+.+++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~-~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGL-KDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGC-SCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhccc-CCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999998888876432100 001123358999999999999999999873
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.27 E-value=0.00053 Score=77.04 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|.+..++.+...+......- ..++.....+.++|++|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~-~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGL-GHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTC-SCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhccc-CCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 457899999888877775322100 00112334799999999999999999987
No 80
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.23 E-value=0.0016 Score=62.42 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCccccchhhHHHHHHHhhCCCCCC---cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDE---ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
-.+++|.+..+.++.+....-.... .-+ -.-.+-+.|+|++|+|||||++.++.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT-CCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcC-CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3568888877666655443111000 000 00122389999999999999999987
No 81
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.17 E-value=0.00027 Score=69.97 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=30.5
Q ss_pred chhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 171 RNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 171 R~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+...+..+.+++..... .....+.|+|++|+|||+||..+++.
T Consensus 133 ~~~~~~~~~~~i~~~~~-------~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS-------AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHHCSC-------SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-------cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33444556666664321 12468999999999999999999984
No 82
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.11 E-value=0.0021 Score=62.56 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=34.9
Q ss_pred cCCCccccchhhHHHHHHHhhCCCCCC---cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 163 IDPLEFHGRNAEKQKILQLLKGESSDE---ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 163 ~~~~~~vGR~~e~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.....++|.+..+.++.+....-.... .-+ -.-.+-+.|+|++|+|||||++.++.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~-~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTT-CCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcC-CCCCCeEEEECCCcChHHHHHHHHHH
Confidence 334568898877776665543211000 000 00112389999999999999999987
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.10 E-value=0.0024 Score=71.74 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHhhCCCC-CC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESS-DE--ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~-~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|.+..+++|.+++...-. .+ ..-.-.....|.|+|++|+||||||+.++.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 5689999999999888753100 00 000012356799999999999999999987
No 84
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.09 E-value=0.0016 Score=61.24 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEec
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSAS 236 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 236 (597)
..+++|.|++|+|||||+..++.. ....-..++|+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEcc
Confidence 469999999999999999999863 22222346666643
No 85
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.06 E-value=0.0039 Score=65.58 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=35.3
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCC--cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSDE--ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.-..++|.++.+.++.+....-.... ..-+-.-.+-|.|+|++|+|||+||+.++.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34568899887777665543211100 000001123489999999999999999987
No 86
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.99 E-value=0.00073 Score=63.12 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=61.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC--
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS-- 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-- 273 (597)
...++.|+|+.|+||||++..+.++ ...+-..++.+......... ..++..++....
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r~~-------------------~~i~srlG~~~~~~ 69 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTRSI-------------------RNIQSRTGTSLPSV 69 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGGGC-------------------SSCCCCCCCSSCCE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCchHH-------------------HHHHHhcCCCcccc
Confidence 3478999999999999999998874 33332233334322211110 011112221111
Q ss_pred chhhHHHHHHHHHHHhcCc-eEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 274 SQVEMETVLQYINEFVQGK-KVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 274 ~~~~~~~~~~~l~~~L~~k-r~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.......+...+.+.+.+. .-+||+|.++..+ .+..+.+.. +.. .+..||+|.+..
T Consensus 70 ~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~-~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 70 EVESAPEILNYIMSNSFNDETKVIGIDEVQFFD-DRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp EESSTHHHHHHHHSTTSCTTCCEEEECSGGGSC-THHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred ccCCHHHHHHHHHHHhhCCCCCEEEEecCccCc-HHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 1122234555555544444 4599999997654 234344433 322 278899998865
No 87
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.98 E-value=0.0025 Score=60.41 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=31.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhc----cCCeeEEEEecCCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKA----NFDKRIWVSASYPR 239 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~ 239 (597)
...++.|.|++|+|||||+..++....... .-..++|++....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~ 70 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF 70 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc
Confidence 457999999999999999999876211111 13467888766543
No 88
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.95 E-value=0.0013 Score=70.43 Aligned_cols=50 Identities=30% Similarity=0.491 Sum_probs=33.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|-+.-...+.+.+.-..-. .......+.|+|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~----~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT----KSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS----SSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc----ccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34678777777665443211000 012456899999999999999999987
No 89
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.94 E-value=0.00031 Score=68.86 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
.+++.|+|++|+|||+||.+++.. . -..++|++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEe
Confidence 467889999999999999999873 1 123456666
No 90
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.86 E-value=0.0072 Score=57.14 Aligned_cols=50 Identities=6% Similarity=0.006 Sum_probs=31.8
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhc---CCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLK---SGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~---~~~~gs~IIvTtR~~ 333 (597)
.+...|-.++-+|+||+--..-+......+...+. ....|..||++|.+.
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~ 189 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSM 189 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCS
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecCh
Confidence 34455556777899999755444555566666663 223477788888765
No 91
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.84 E-value=0.0049 Score=62.80 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+.|+|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 92
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.78 E-value=0.0032 Score=57.07 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCce-EEEEEecccCC---CCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 281 VLQYINEFVQGKK-VLLVLDDLWWN---AYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 281 ~~~~l~~~L~~kr-~LLVLDdv~~~---~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.....++.+.+.+ =|||||++-.. . .-..+.+...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g-~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYD-YLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTT-SSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCC-CCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4445555565444 49999998321 1 224566777777777889999999987
No 93
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.75 E-value=0.017 Score=55.91 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 041007 200 IWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 200 v~I~G~gGiGKTtLA~~v~~ 219 (597)
+.|+|++|+||||||+.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999987
No 94
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.73 E-value=0.014 Score=54.83 Aligned_cols=50 Identities=12% Similarity=-0.065 Sum_probs=31.9
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhh-cCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSL-KSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l-~~~~~gs~IIvTtR~~ 333 (597)
.+...|-.++-+|+||+--..-+......+...+ .....+..||++|.+.
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~ 190 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCCh
Confidence 4555566778899999975544455556666543 3333467788888764
No 95
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.64 E-value=0.0034 Score=62.92 Aligned_cols=85 Identities=24% Similarity=0.286 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCC---
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSV--- 272 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~--- 272 (597)
...++.|.|++|+|||||+.+++.. ....-..++|++....++. . .++.++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~----------------~-----ra~rlgv~~~~l 116 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDP----------------V-----YAKNLGVDLKSL 116 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCH----------------H-----HHHHHTCCGGGC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccch----------------H-----HHHHcCCchhhh
Confidence 4579999999999999999999873 3222234678876655543 1 122222211
Q ss_pred --CchhhHHHHHHHHHHHhc-CceEEEEEecccC
Q 041007 273 --SSQVEMETVLQYINEFVQ-GKKVLLVLDDLWW 303 (597)
Q Consensus 273 --~~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~~ 303 (597)
....+.++....+...++ .+.-++|+|.+..
T Consensus 117 ~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 117 LISQPDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp EEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred hhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 112334555555555444 4566899998743
No 96
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.59 E-value=0.0059 Score=59.61 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=51.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCChhhhcc--CCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC---
Q 041007 199 VIWILGNEGIGKTALARQVFDDSDVKAN--FDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS--- 273 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~--- 273 (597)
++.|.|++|+|||||+.+++.. .... =..++|++....++. . .++.++....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~----------------~-----ra~~lGvd~d~ll 86 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITP----------------A-----YLRSMGVDPERVI 86 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCH----------------H-----HHHHTTCCGGGEE
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhH----------------H-----HHHHhCCCHHHeE
Confidence 7899999999999999998774 3332 245789987766654 1 1344443321
Q ss_pred --chhhHHHH-HHHHHHH--h-cCceEEEEEecccCC
Q 041007 274 --SQVEMETV-LQYINEF--V-QGKKVLLVLDDLWWN 304 (597)
Q Consensus 274 --~~~~~~~~-~~~l~~~--L-~~kr~LLVLDdv~~~ 304 (597)
.+.+.+++ ...+... + .++.-|||+|-+...
T Consensus 87 v~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 87 HTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp EEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTC
T ss_pred EEcCCCHHHHHHHHHHHHHHhhccCceEEEEeccccc
Confidence 12234444 3333222 2 356889999998544
No 97
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.49 E-value=0.011 Score=56.35 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=68.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhh-hcc---CCeeEEEEecCCCchhhhhhhhhhhcc----------cchHHHHHH
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDV-KAN---FDKRIWVSASYPRDEIRVARDEISVAR----------DRDEIRVAK 262 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~---F~~~~wv~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 262 (597)
..+++|.|+.|+|||||.+.++.-..- .+. ...+.++.-.............+.... .........
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 458999999999999999999863111 111 112333321111110011111111100 111133455
Q ss_pred HHHHhccCCC---Cc---hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 263 AILESLKGSV---SS---QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 263 ~il~~l~~~~---~~---~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.+++.++... .. ...-+.-.-.|...|..++-+|+||+--..-+...-..+...+... ..|..||++|.+.
T Consensus 111 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 6677665421 11 1112222334555666778899999975443344555555555432 2266788887654
No 98
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.48 E-value=0.015 Score=55.23 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=31.4
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
-.|...|-.++-+|+||+--..-+......+...+.....|..||++|.+.
T Consensus 154 v~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~ 204 (247)
T 2ff7_A 154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL 204 (247)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSG
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 345556667788999999755443444444544443322467788888765
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.45 E-value=0.0086 Score=58.18 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhcc----------CCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHH
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKAN----------FDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAIL 265 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----------F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 265 (597)
...++.|.|++|+|||||+..++.. .... -..+++++..............+.. ..+ ......++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~--~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~--~~~-~~~~~~~~ 103 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ--IAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGA--HLS-AEERQAVA 103 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHT--TSC-HHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHh--hcC-hhhhhhcc
Confidence 3579999999999999999998752 2221 1235666655443221111111110 000 11123334
Q ss_pred HhccCCC-----CchhhHHHHHHHHHHHhcCceEEEEEecccC--CCCc---chHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 266 ESLKGSV-----SSQVEMETVLQYINEFVQGKKVLLVLDDLWW--NAYP---RYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 266 ~~l~~~~-----~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~--~~~~---~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
+.+.... ....+... ...+..... +.-+||||.+-. ..+. .....+...|... ..|+.||+++...
T Consensus 104 ~~l~l~~~~~~~~~~ls~g~-~~~i~~l~~-~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 104 DGLLIQPLIGSLPNIMAPEW-FDGLKRAAE-GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHEEECCCTTSCCCTTSHHH-HHHHHHHHT-TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CceEEeecCCCCcccCCHHH-HHHHHHhcC-CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 4443211 11111122 334444444 467999999865 2111 1224444444332 3477888887655
No 100
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.44 E-value=0.013 Score=58.76 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=33.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhc----cCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKA----NFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~ 241 (597)
...++.|+|++|+|||+||.+++....... .-..++|++....++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~ 170 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRP 170 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH
Confidence 457999999999999999999876311111 1246889988776554
No 101
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.39 E-value=0.01 Score=59.00 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=32.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhcc----CCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKAN----FDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~ 241 (597)
...++.|+|++|+|||+||.+++........ -..++|++....++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~ 155 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRW 155 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH
Confidence 4579999999999999999998763111110 246789988776544
No 102
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.37 E-value=0.021 Score=52.84 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=67.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhh-hc--cC---------CeeEEEEecCCCchhhhhhhhhhhc----c-cchHHH
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDV-KA--NF---------DKRIWVSASYPRDEIRVARDEISVA----R-DRDEIR 259 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~F---------~~~~wv~~~~~~~~~~~~~~~~~~~----~-~~~~~~ 259 (597)
..+++|+|+.|+|||||.+.++.-... .+ .| ..+.++.-.............+... . ... ..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~ 113 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-KN 113 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC-HH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH-HH
Confidence 358999999999999999999763110 00 01 1122332111110000111111100 0 111 33
Q ss_pred HHHHHHHhccCCCC--ch---hhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 260 VAKAILESLKGSVS--SQ---VEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 260 ~~~~il~~l~~~~~--~~---~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
....+++.++.... .. ..-+.-.-.+...|..++-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 114 ~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~ 193 (214)
T 1sgw_A 114 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193 (214)
T ss_dssp HHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC
T ss_pred HHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45566776654321 11 111222334556667788899999865443344555555444332 2356777777765
No 103
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.34 E-value=0.011 Score=55.97 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP 238 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 238 (597)
...++.|.|++|+|||||+.+++.. ....-..++|++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 3469999999999999999888763 2222245777775543
No 104
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.33 E-value=0.0034 Score=59.71 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|.|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999999874
No 105
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.32 E-value=0.0084 Score=60.20 Aligned_cols=86 Identities=22% Similarity=0.189 Sum_probs=52.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC--
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS-- 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-- 273 (597)
...++.|.|++|+||||||.+++.. ....=..++|++....++.. ..+.++....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~---------------------~a~~lG~~~~~l 116 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE---------------------YAKKLGVDTDSL 116 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH---------------------HHHHTTCCGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH---------------------HHHHcCCCHHHe
Confidence 4579999999999999999999863 32222457888877655431 1222222110
Q ss_pred ---chhhHHHHHHHHHHHhc-CceEEEEEecccCC
Q 041007 274 ---SQVEMETVLQYINEFVQ-GKKVLLVLDDLWWN 304 (597)
Q Consensus 274 ---~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~~~ 304 (597)
...+.++....+..... .+.-+||+|.+...
T Consensus 117 ~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 117 LVSQPDTGEQALEIADMLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp EEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGC
T ss_pred EEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhh
Confidence 11234455555554443 45679999998543
No 106
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.29 E-value=0.033 Score=52.59 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999975
No 107
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.29 E-value=0.0091 Score=60.25 Aligned_cols=86 Identities=21% Similarity=0.185 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCC---
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSV--- 272 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~--- 272 (597)
...++.|.|++|+||||||.+++.. ....-..++|++....++... +..++...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~~---------------------a~~~g~d~~~l 129 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPVY---------------------ARALGVNTDEL 129 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH---------------------HHHTTCCGGGC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHHH---------------------HHHcCCCHHHc
Confidence 4568999999999999999998773 322224688998876655411 22222211
Q ss_pred --CchhhHHHHHHHHHHHhc-CceEEEEEecccCC
Q 041007 273 --SSQVEMETVLQYINEFVQ-GKKVLLVLDDLWWN 304 (597)
Q Consensus 273 --~~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~~~ 304 (597)
....+.+++...+....+ ...-+||+|.+...
T Consensus 130 ~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 130 LVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp EEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTC
T ss_pred eeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHh
Confidence 012244555666665554 34569999998543
No 108
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.25 E-value=0.0098 Score=59.12 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=32.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhc---------cC-----CeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKA---------NF-----DKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~ 241 (597)
...++.|.|++|+|||+||.+++....... .. ..++|++....++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~ 156 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 156 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH
Confidence 457999999999999999999875311111 11 36788888776544
No 109
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.25 E-value=0.019 Score=55.00 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=65.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEE----------------ecCCCchhhhhhhhhhhccc--chHH
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVS----------------ASYPRDEIRVARDEISVARD--RDEI 258 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~----------------~~~~~~~~~~~~~~~~~~~~--~~~~ 258 (597)
..+++|.|+.|+|||||.+.++.- . ...+.+++. +.+...........+..... ....
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl--~--p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~ 105 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL--L--PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR 105 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS--S--CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC--C--CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHH
Confidence 358999999999999999999863 1 222333321 11111100000111100000 0012
Q ss_pred HHHHHHHHhccCC-CC---c---hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEcc
Q 041007 259 RVAKAILESLKGS-VS---S---QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRS 331 (597)
Q Consensus 259 ~~~~~il~~l~~~-~~---~---~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR 331 (597)
....++++.++.. .. . ...-+.-.-.+...|..++-+|+||+--..-+...-..+...+..... .||++|.
T Consensus 106 ~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtH 183 (263)
T 2pjz_A 106 DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTH 183 (263)
T ss_dssp HHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEES
T ss_pred HHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEc
Confidence 3345566666543 11 1 111122233455566677889999997544435555556555554333 6777776
Q ss_pred CC
Q 041007 332 GG 333 (597)
Q Consensus 332 ~~ 333 (597)
+.
T Consensus 184 d~ 185 (263)
T 2pjz_A 184 EL 185 (263)
T ss_dssp CG
T ss_pred CH
Confidence 54
No 110
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.24 E-value=0.036 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46999999999999999999976
No 111
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.23 E-value=0.018 Score=54.66 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999975
No 112
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.22 E-value=0.083 Score=52.75 Aligned_cols=163 Identities=10% Similarity=-0.042 Sum_probs=96.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQ 275 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 275 (597)
-.++..++|+.|.||++.+..+.+.. ....|+....+......+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~----------------------------------- 60 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTD----------------------------------- 60 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCC-----------------------------------
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCC-----------------------------------
Confidence 35799999999999999999987731 122343221122221111
Q ss_pred hhHHHHHHHHHH-HhcCceEEEEEecccC-CCCcchHHHHHHhhcCCCCCcEEEEEccCCCC-C-CCcccccccccCccc
Q 041007 276 VEMETVLQYINE-FVQGKKVLLVLDDLWW-NAYPRYWEQLMYSLKSGSEGSRILVTRSGGKN-G-TNMTEIGLGEKNGTN 351 (597)
Q Consensus 276 ~~~~~~~~~l~~-~L~~kr~LLVLDdv~~-~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~~~-~-~~~~~~~~~~~~~~~ 351 (597)
..++.+.+.. -+-+++-++|+|+++. .. ...++.+...+...++++.+|+++..... . ...... .+..
T Consensus 61 --~~~l~~~~~~~plf~~~kvvii~~~~~kl~-~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~-----~i~s 132 (343)
T 1jr3_D 61 --WNAIFSLCQAMSLFASRQTLLLLLPENGPN-AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFT-----ALAN 132 (343)
T ss_dssp --HHHHHHHHHHHHHCCSCEEEEEECCSSCCC-TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHH-----HHTT
T ss_pred --HHHHHHHhcCcCCccCCeEEEEECCCCCCC-hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHH-----HHHh
Confidence 1222222221 1335677889999976 43 45778888888766677777776643200 0 000000 0111
Q ss_pred cc-eeecCCCChHHHHHHHHHHhccCCCCCCccchHHHHHHHHHhcCCchHHHHHH
Q 041007 352 MM-EIGLGELSEEECRSLFRQIAFHGRSSDYREKFEPIGRRVVGKCKGLPFAVKIL 406 (597)
Q Consensus 352 ~~-~~~l~~Ls~~es~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~GlPLai~~~ 406 (597)
.+ .++..+++.++....+...+...+.. -..+.+..|++.++|.+..+...
T Consensus 133 r~~~~~~~~l~~~~l~~~l~~~~~~~g~~----i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 133 RSVQVTCQTPEQAQLPRWVAARAKQLNLE----LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp TCEEEEECCCCTTHHHHHHHHHHHHTTCE----ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred CceEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhchHHHHHHHH
Confidence 11 28899999999998888776432211 12456788999999988877543
No 113
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.21 E-value=0.0094 Score=58.43 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=28.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCC-eeEEEEec
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFD-KRIWVSAS 236 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~~~ 236 (597)
...+++|.|++|+|||||+..++.. ...... .++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 3469999999999999999998873 222222 45666654
No 114
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.15 E-value=0.047 Score=52.61 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=32.7
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCC--CCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGS--EGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~--~gs~IIvTtR~~ 333 (597)
.|...|-.++-+|+||+--..-+...-..+...+.... .|..||++|.+.
T Consensus 166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 45566667788999999755444555555666665432 377788888764
No 115
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.14 E-value=0.011 Score=59.49 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=33.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
...++.|.|++|+||||||.+++.. ....-..++|++....++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDP 105 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccH
Confidence 4579999999999999999998873 3222236888988766554
No 116
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.14 E-value=0.026 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|+|+.|+|||||++.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999999763
No 117
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.12 E-value=0.042 Score=52.42 Aligned_cols=51 Identities=22% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 283 QYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 283 ~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
-.|...|..++-+|+||+--..-+......+...+... ..|..||++|.+.
T Consensus 155 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 155 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred HHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 34556667788899999865443344444444444321 2367788887764
No 118
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.10 E-value=0.0055 Score=56.32 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=33.5
Q ss_pred cchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 170 GRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 170 GR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.|+..++.|.+.+.... .....+|+|.|+.|+|||||++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~-------~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK-------TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC-------CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc-------cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667778888776432 13467999999999999999999876
No 119
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.06 E-value=0.023 Score=51.29 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.++.|+|+.|+||||++..++++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999777663
No 120
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.06 E-value=0.041 Score=53.51 Aligned_cols=50 Identities=12% Similarity=-0.065 Sum_probs=31.8
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhh-cCCCCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSL-KSGSEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l-~~~~~gs~IIvTtR~~ 333 (597)
.|...|..++-+|+||+--..-+...-..+...+ .....|..||++|.+.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~ 219 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 4555566778899999975544455555566543 2333467788888764
No 121
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.02 E-value=0.02 Score=58.37 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhh----hccCCeeEEEEecCCCc
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDV----KANFDKRIWVSASYPRD 240 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~~~~~~~ 240 (597)
...++.|.|++|+|||||+..++-.... ...-..++|++....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~ 225 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR 225 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC
Confidence 4579999999999999999976521111 11234578887665443
No 122
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.01 E-value=0.059 Score=50.27 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=32.1
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.-.+...|..++-+|+||+--..-+...-..+...+... ..|..||++|.+.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 334566677788899999865443344444455444332 2367888888764
No 123
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.99 E-value=0.057 Score=51.72 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=31.0
Q ss_pred HHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcEEEEEccCC
Q 041007 284 YINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSRILVTRSGG 333 (597)
Q Consensus 284 ~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~IIvTtR~~ 333 (597)
.|...|..++-+|+||+--..-+...-..+...+... ..|..||++|.+.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4556667778899999965443344444444444331 2367888888764
No 124
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.97 E-value=0.056 Score=51.90 Aligned_cols=135 Identities=17% Similarity=0.131 Sum_probs=67.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhh-hc--cCC-----------eeEEEEecCCCc-h--hhhhhhhhhhc-----cc
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDV-KA--NFD-----------KRIWVSASYPRD-E--IRVARDEISVA-----RD 254 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~-----------~~~wv~~~~~~~-~--~~~~~~~~~~~-----~~ 254 (597)
..+++|+|+.|+|||||.+.++.-... .+ .++ .+.++. +... . .......+... ..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~--q~~~~~~~~~tv~enl~~~~~~~~~~ 110 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAF--QYPEDQFFAERVFDEVAFAVKNFYPD 110 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEEC--SSGGGGCCCSSHHHHHHHTTTTTCTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEe--ccchhhcCCCcHHHHHHHHHHhcCCH
Confidence 469999999999999999999763110 00 000 122222 2110 0 00111111110 01
Q ss_pred chHHHHHHHHHHhccCC--C---Cc---hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC-CCCcE
Q 041007 255 RDEIRVAKAILESLKGS--V---SS---QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG-SEGSR 325 (597)
Q Consensus 255 ~~~~~~~~~il~~l~~~--~---~~---~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~-~~gs~ 325 (597)
.........+++.++.. . .. ...-+.-.-.|...|..++-+|+||.--..-+...-..+...+... ..|..
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 190 (266)
T 2yz2_A 111 RDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190 (266)
T ss_dssp SCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence 11123345566665543 1 11 1111222334556667788899999975444344555555555432 23677
Q ss_pred EEEEccCC
Q 041007 326 ILVTRSGG 333 (597)
Q Consensus 326 IIvTtR~~ 333 (597)
||++|.+.
T Consensus 191 ii~vtHd~ 198 (266)
T 2yz2_A 191 VILISHDI 198 (266)
T ss_dssp EEEECSCC
T ss_pred EEEEeCCH
Confidence 88888775
No 125
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.97 E-value=0.024 Score=56.93 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=29.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhh---ccCC-eeEEEEecCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVK---ANFD-KRIWVSASYP 238 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~~~~~ 238 (597)
...++.|+|++|+|||||+..++...... +... .++|++....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 45799999999999999999987631111 1112 3488876554
No 126
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.96 E-value=0.026 Score=53.34 Aligned_cols=133 Identities=15% Similarity=0.031 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEE----------------ecCCCchh--hhhhhhhhhc-c---cc
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVS----------------ASYPRDEI--RVARDEISVA-R---DR 255 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~----------------~~~~~~~~--~~~~~~~~~~-~---~~ 255 (597)
.+++|.|+.|+|||||.+.++.-.. ...+.+++. +.+..... ......+... . ..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 101 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV 101 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc
Confidence 7999999999999999999976311 111222221 01111000 0011111110 0 01
Q ss_pred hHHHHHHHHHHhccCCCC---c---hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEE
Q 041007 256 DEIRVAKAILESLKGSVS---S---QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRIL 327 (597)
Q Consensus 256 ~~~~~~~~il~~l~~~~~---~---~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~II 327 (597)
.......++++.++.... . ...-+.-.-.+...|..++-+|+||+--..-+...-..+...+... ..|..||
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi 181 (240)
T 2onk_A 102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 113344566676654321 1 1111222334566667788899999864443344444455544432 2256677
Q ss_pred EEccCC
Q 041007 328 VTRSGG 333 (597)
Q Consensus 328 vTtR~~ 333 (597)
++|.+.
T Consensus 182 ~vtHd~ 187 (240)
T 2onk_A 182 HVTHDL 187 (240)
T ss_dssp EEESCH
T ss_pred EEeCCH
Confidence 777654
No 127
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.83 E-value=0.021 Score=55.85 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|++|+||||++..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 128
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.81 E-value=0.027 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346999999999999999999976
No 129
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.67 E-value=0.023 Score=56.18 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=30.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP 238 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 238 (597)
...++.|.|.+|+||||||.+++.+...++ ..++|++....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s 107 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMG 107 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCC
Confidence 356999999999999999999876422222 56788876543
No 130
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.65 E-value=0.0088 Score=55.25 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|+.|+|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999877
No 131
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.61 E-value=0.01 Score=59.51 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhc-cCCe-eEEEEecCCCc
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKA-NFDK-RIWVSASYPRD 240 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~~~~~~~ 240 (597)
....++|+|++|+|||||++.+.+. +.. +-+. ++++-+.+...
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~~ 217 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERPE 217 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCChH
Confidence 4569999999999999999998773 322 2222 34566665443
No 132
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.61 E-value=0.0088 Score=60.57 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHhhCC----CCCC-cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 167 EFHGRNAEKQKILQLLKGE----SSDE-ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~----~~~~-~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.++|.+..++.+...+... .... ..........|.|+|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3689999888888877200 0000 000012356789999999999999999987
No 133
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.61 E-value=0.007 Score=63.72 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.++|++..++.+...+.. ...|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~------------~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS------------GESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH------------TCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhc------------CCeeEeecCchHHHHHHHHHHHHH
Confidence 478999999988887763 247899999999999999999883
No 134
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.58 E-value=0.0066 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999977
No 135
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.58 E-value=0.044 Score=51.03 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=28.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhh---hc-cCCeeEEEEecC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDV---KA-NFDKRIWVSASY 237 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~-~F~~~~wv~~~~ 237 (597)
...+++|+|++|+|||||++.++..... .. .-...+|+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4579999999999999999998642111 11 123477776544
No 136
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.52 E-value=0.0068 Score=53.92 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 041007 198 PVIWILGNEGIGKTALARQV 217 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v 217 (597)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 137
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.51 E-value=0.062 Score=55.49 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccC-CeeEEEEecCCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANF-DKRIWVSASYPR 239 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~~~~~~ 239 (597)
...++|+|++|+|||||+..+..+ ....+ ..++++.+....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGert 192 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERT 192 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCH
T ss_pred CCEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCc
Confidence 357899999999999999999874 33222 345556555443
No 138
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.47 E-value=0.0085 Score=53.95 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999876
No 139
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.46 E-value=0.06 Score=53.93 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=33.3
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.-.|...|..++-+|++|.--..-+...-..+...+... ..|..||++|.+-
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl 224 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 445667778888999999975443344445555555432 3367788777764
No 140
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.44 E-value=0.034 Score=55.22 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=29.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
...++.|.|.+|+||||||..++.+... .=..++|++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm 84 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM 84 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence 3469999999999999999999874222 223567776543
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.43 E-value=0.0084 Score=54.38 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|.|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999873
No 142
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.38 E-value=0.0081 Score=53.32 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|.|++|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 143
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.37 E-value=0.091 Score=53.28 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|.|+.|+|||||.+.++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 346999999999999999999976
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.30 E-value=0.0088 Score=53.55 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999976
No 145
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.27 E-value=0.01 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 146
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.25 E-value=0.11 Score=56.15 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999875
No 147
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.23 E-value=0.11 Score=51.76 Aligned_cols=133 Identities=16% Similarity=0.042 Sum_probs=66.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEE----------------ecCCCchhh--hhhhhhhh----ccc
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVS----------------ASYPRDEIR--VARDEISV----ARD 254 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~----------------~~~~~~~~~--~~~~~~~~----~~~ 254 (597)
..+++|.|+.|+|||||.+.++--.. ...+.+++. +.+.+.... .....+.. ...
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 102 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 46999999999999999999976311 111222221 111111100 00000000 000
Q ss_pred chHHHHHHHHHHhccCCCC-----c-hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEE
Q 041007 255 RDEIRVAKAILESLKGSVS-----S-QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRI 326 (597)
Q Consensus 255 ~~~~~~~~~il~~l~~~~~-----~-~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~I 326 (597)
.. .....++++.++.... . ...-+.-.-.|...|-.++-+|+||+--..-+...-..+...+... ..|..|
T Consensus 103 ~~-~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti 181 (348)
T 3d31_A 103 KD-PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181 (348)
T ss_dssp CC-HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CH-HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 01 1344556666654321 1 1112233335666777788899999864433344444444444332 236677
Q ss_pred EEEccCC
Q 041007 327 LVTRSGG 333 (597)
Q Consensus 327 IvTtR~~ 333 (597)
|++|.+.
T Consensus 182 i~vTHd~ 188 (348)
T 3d31_A 182 LHITHDQ 188 (348)
T ss_dssp EEEESCH
T ss_pred EEEeCCH
Confidence 7777654
No 148
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.22 E-value=0.011 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3579999999999999999999763
No 149
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.21 E-value=0.27 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+.+|.++|++|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 150
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.19 E-value=0.017 Score=56.97 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=32.2
Q ss_pred cccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 168 FHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 168 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
++|-...+..+...+..... ...+.+|+|.|+.|+|||||++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~------~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE------PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC------CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC------CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555555555555543322 23567999999999999999998865
No 151
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.14 E-value=0.012 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+|+|.|++|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.14 E-value=0.09 Score=51.50 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=27.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEe
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSA 235 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~ 235 (597)
...+|+|+|++|+||||++..++.. ....-..+.++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcc
Confidence 4579999999999999999998873 3322223445543
No 153
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.12 E-value=0.0096 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 154
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.09 E-value=0.081 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46999999999999999999975
No 155
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.07 E-value=0.014 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 156
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.06 E-value=0.013 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999976
No 157
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.05 E-value=0.012 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 158
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.03 E-value=0.0087 Score=60.09 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=32.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|.+..++.+...+... ...-|.|+|++|+|||+||+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~----------~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP----------GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG----------GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC----------CCceEEEECCCCccHHHHHHHHHH
Confidence 45899988666654444321 123489999999999999999987
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.03 E-value=0.014 Score=53.60 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 160
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.03 E-value=0.019 Score=55.88 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+.+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 161
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.00 E-value=0.09 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||.+.++-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46999999999999999999975
No 162
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.99 E-value=0.013 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 163
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.99 E-value=0.11 Score=55.90 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|+|+.|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3468999999999999999999763
No 164
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.97 E-value=0.013 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 165
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.95 E-value=0.015 Score=52.16 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|.|+|++|+||||+++.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 166
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.95 E-value=0.012 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
++++|.|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 167
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.92 E-value=0.012 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
|.|+|+||+|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999875
No 168
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.92 E-value=0.017 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....|+|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 169
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.92 E-value=0.016 Score=52.74 Aligned_cols=24 Identities=13% Similarity=0.486 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457999999999999999999875
No 170
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.91 E-value=0.074 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||.+.+.-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 46999999999999999999976
No 171
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.91 E-value=0.11 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46999999999999999999976
No 172
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.90 E-value=0.013 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.672 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|++|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 173
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.90 E-value=0.15 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+||||++..++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999887
No 174
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.89 E-value=0.012 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346999999999999999998664
No 175
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.87 E-value=0.13 Score=51.41 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCCC-----Cc-hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEc
Q 041007 259 RVAKAILESLKGSV-----SS-QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTR 330 (597)
Q Consensus 259 ~~~~~il~~l~~~~-----~~-~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTt 330 (597)
....++++.++... .. ...-+.-.-.|...|..++-+|+||+--..-+...-..+...+... ..|..||++|
T Consensus 119 ~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 198 (353)
T 1oxx_K 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198 (353)
T ss_dssp HHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34556666665421 11 1112223335666777788899999864433344445555544332 2256777777
Q ss_pred cCC
Q 041007 331 SGG 333 (597)
Q Consensus 331 R~~ 333 (597)
.+.
T Consensus 199 Hd~ 201 (353)
T 1oxx_K 199 HDP 201 (353)
T ss_dssp SCH
T ss_pred CCH
Confidence 654
No 176
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.87 E-value=0.032 Score=56.06 Aligned_cols=108 Identities=8% Similarity=0.122 Sum_probs=57.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCchhh
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSSQVE 277 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 277 (597)
.+++|+|+.|+|||||.+.+.. .........+ +.+.++..... ..... ++.+.... ...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~~--~~~~~-------------~v~q~~~~-~~~-- 182 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFVH--ESKKC-------------LVNQREVH-RDT-- 182 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSCC--CCSSS-------------EEEEEEBT-TTB--
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhhh--hcccc-------------ceeeeeec-ccc--
Confidence 5999999999999999999876 2322222222 22222211100 00000 00000000 000
Q ss_pred HHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 278 METVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 278 ~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
......+...|...+=+|++|+..+ ...++.+.... ..|..||+|+...
T Consensus 183 -~~~~~~La~aL~~~PdvillDEp~d---~e~~~~~~~~~---~~G~~vl~t~H~~ 231 (356)
T 3jvv_A 183 -LGFSEALRSALREDPDIILVGEMRD---LETIRLALTAA---ETGHLVFGTLHTT 231 (356)
T ss_dssp -SCHHHHHHHHTTSCCSEEEESCCCS---HHHHHHHHHHH---HTTCEEEEEESCS
T ss_pred -CCHHHHHHHHhhhCcCEEecCCCCC---HHHHHHHHHHH---hcCCEEEEEEccC
Confidence 1233477888888899999999952 33455444432 2366788888765
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.82 E-value=0.017 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|+|++|+|||||++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999876
No 178
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.82 E-value=0.028 Score=54.80 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+.+|+|.|+.|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999988773
No 179
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.79 E-value=0.016 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 180
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.77 E-value=0.019 Score=52.77 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|++|+|||||++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 181
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.75 E-value=0.016 Score=53.52 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 182
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.72 E-value=0.014 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+.++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 183
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.72 E-value=0.33 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+.+|.++|++|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998863
No 184
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.71 E-value=0.015 Score=52.59 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|.|++|+||||+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 185
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.70 E-value=0.066 Score=55.92 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+.+.|.|++|+|||+++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 38999999999999999998874
No 186
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.69 E-value=0.019 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|++|+||||+++.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 187
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.65 E-value=0.079 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+++.|+|++|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999876
No 188
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.64 E-value=0.049 Score=65.92 Aligned_cols=84 Identities=23% Similarity=0.250 Sum_probs=52.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCC---
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSV--- 272 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~--- 272 (597)
..+.|.|+|++|+|||+||.++... ....=..++|+++...++.+. ++.++.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~---------------------a~~~G~dl~~l 1482 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY---------------------ARKLGVDIDNL 1482 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH---------------------HHHTTCCTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH---------------------HHHcCCCchhc
Confidence 5679999999999999999999873 333323567787776655421 22333111
Q ss_pred --CchhhHHHHHHHHHHHhc-CceEEEEEeccc
Q 041007 273 --SSQVEMETVLQYINEFVQ-GKKVLLVLDDLW 302 (597)
Q Consensus 273 --~~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~ 302 (597)
....+.++....+....+ .+.-+||+|.+.
T Consensus 1483 ~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1483 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 011223445555554443 567899999984
No 189
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.64 E-value=0.021 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999976
No 190
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.62 E-value=0.02 Score=52.04 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 191
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.61 E-value=0.1 Score=54.02 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=34.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
....++|.|.+|+|||+|+..+.++. .+.+-+.++++-+.+....
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rE 208 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTRE 208 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHH
Confidence 45679999999999999999988731 2234567888888776654
No 192
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.61 E-value=0.085 Score=55.84 Aligned_cols=41 Identities=15% Similarity=-0.033 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhcc-CCeeEEEEecCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKAN-FDKRIWVSASYP 238 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~~~~~ 238 (597)
...++.|.|.+|+||||||.+++.+ .... =..++|++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSSC
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccCC
Confidence 4579999999999999999998874 2222 235777776543
No 193
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.57 E-value=0.092 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||.+.++-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46999999999999999999975
No 194
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.56 E-value=0.025 Score=55.54 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|++|+|||||+..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999876
No 195
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.56 E-value=0.019 Score=51.51 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 196
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.53 E-value=0.02 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|++|+||||+++.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999976
No 197
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.52 E-value=0.017 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999976
No 198
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.51 E-value=0.033 Score=55.39 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=30.2
Q ss_pred cchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 170 GRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 170 GR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+-+.-.+++.+.+...-. .+....|.|+|++|+||||+++.++.
T Consensus 3 ~~~~L~~~il~~l~~~i~------~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIE------DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CHHHHHHHHHHHHHHTTT------TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc------cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 334445556665543221 23456799999999999999999877
No 199
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.51 E-value=0.017 Score=51.52 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 200
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.47 E-value=0.019 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+++|.|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999964
No 201
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.47 E-value=0.02 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+.+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 202
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.45 E-value=0.018 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.43 E-value=0.022 Score=52.96 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999876
No 204
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.41 E-value=0.022 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|+.|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999977
No 205
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.39 E-value=0.032 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+.+|.|.|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999976
No 206
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.37 E-value=0.027 Score=51.89 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|+.|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 207
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.042 Score=51.91 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=29.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP 238 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 238 (597)
...++.|.|.+|+|||+||.+++.+. ....-..+++++....
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC
Confidence 45699999999999999999976531 2222345666665543
No 208
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.35 E-value=0.022 Score=53.11 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 209
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.35 E-value=0.026 Score=50.85 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 210
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.34 E-value=0.12 Score=53.79 Aligned_cols=41 Identities=20% Similarity=0.078 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
...++.|.|.+|+|||+||..++.+.... .=..++|++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~ 239 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM 239 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 34699999999999999999998742221 123577777653
No 211
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.33 E-value=0.023 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 212
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.32 E-value=0.027 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...++|.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999877
No 213
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.30 E-value=0.022 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.29 E-value=0.024 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+.+|+|.|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999984
No 215
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.26 E-value=0.017 Score=51.91 Aligned_cols=24 Identities=42% Similarity=0.787 Sum_probs=17.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
No 216
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.26 E-value=0.022 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999876
No 217
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.25 E-value=0.026 Score=51.97 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|.|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356999999999999999999876
No 218
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.24 E-value=0.1 Score=54.45 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=29.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASY 237 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 237 (597)
...++.|.|.+|+|||||+..++.+.... .-..++|++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM 242 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 34699999999999999999998742222 122577777554
No 219
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.23 E-value=0.024 Score=51.78 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 220
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.23 E-value=0.021 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 221
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.23 E-value=0.024 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 222
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.23 E-value=0.14 Score=51.17 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=36.8
Q ss_pred HHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhc-cCCe-eEEEEecCCCch
Q 041007 176 QKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKA-NFDK-RIWVSASYPRDE 241 (597)
Q Consensus 176 ~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~~~~~~~~ 241 (597)
-+.++.|..-. ....++|.|.+|+|||+|+..+.+. +.. +-+. ++++-+.+....
T Consensus 163 iraID~l~Pig---------rGQR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER~~E 219 (427)
T 3l0o_A 163 TRLIDLFAPIG---------KGQRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDERPEE 219 (427)
T ss_dssp HHHHHHHSCCB---------TTCEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCCHHH
T ss_pred chhhhhccccc---------CCceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccCcch
Confidence 35667776433 4568999999999999999998883 322 2232 345666665444
No 223
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.22 E-value=0.025 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+|+|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 224
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.22 E-value=0.037 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|.|+.|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.19 E-value=0.43 Score=46.98 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....+|+|+|++|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999877
No 226
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.19 E-value=0.024 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...|+|.|++|+||||+++.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 227
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.18 E-value=0.024 Score=51.88 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 228
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.18 E-value=0.027 Score=51.24 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=27.2
Q ss_pred HHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 175 KQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 175 ~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+..+..++... +....+.|+|++|+|||++|..+++
T Consensus 45 ~~~l~~~~~~i---------Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGT---------PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTC---------TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcC---------CcccEEEEECCCCCCHHHHHHHHHH
Confidence 45566666521 2345799999999999999998887
No 229
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.18 E-value=0.2 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 46899999999999999999975
No 230
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.16 E-value=0.028 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++.|.|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999873
No 231
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.15 E-value=0.03 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.13 E-value=0.058 Score=59.82 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCCccccchhhHHHHHHHhhCCCCC-C--cCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 164 DPLEFHGRNAEKQKILQLLKGESSD-E--ESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 164 ~~~~~vGR~~e~~~l~~~L~~~~~~-~--~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.-..+.|-++.+++|.+.+...-.. + ...+...++-|.++|++|.|||.||+.+++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 3355678888888887776533210 0 0111234556889999999999999999984
No 233
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.11 E-value=0.22 Score=46.64 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=17.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 041007 198 PVIWILGNEGIGKTALARQVF 218 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~ 218 (597)
+.+.|.|+.|+||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 689999999999998766554
No 234
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.10 E-value=0.026 Score=53.73 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|++|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 235
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.08 E-value=0.16 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.|+|-|.-|+||||.++.+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999883
No 236
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.07 E-value=0.035 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+..|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 237
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.04 E-value=0.029 Score=53.17 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998866
No 238
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.02 E-value=0.03 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...|+|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 239
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.02 E-value=0.029 Score=55.31 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999876
No 240
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.96 E-value=0.031 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999977
No 241
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.94 E-value=0.04 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999873
No 242
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.94 E-value=0.033 Score=48.80 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|.|+.|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999876
No 243
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.93 E-value=0.2 Score=54.03 Aligned_cols=137 Identities=14% Similarity=0.046 Sum_probs=68.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhh-hcc--CC-eeEEEEecCCCchhhhhhhhhhhc--ccchHHHHHHHHHHhccC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDV-KAN--FD-KRIWVSASYPRDEIRVARDEISVA--RDRDEIRVAKAILESLKG 270 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-~~~wv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~~l~~ 270 (597)
..+++|.|+.|+|||||++.++.-..- .+. +. .+.++.-.............+... ...........+++.++.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999864211 111 11 233332211110000111111100 000012334556666654
Q ss_pred CCC---c---hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 271 SVS---S---QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 271 ~~~---~---~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
... . ...-+.-.-.|...|..++-+|+||+--+.-+...-..+...+... ..|..||++|.+.
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 321 1 1112333335666777788899999864433344444455444432 2466777777764
No 244
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.93 E-value=0.11 Score=56.12 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....++|+|+.|+|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 356999999999999999998865
No 245
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.91 E-value=0.26 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....++|+|+.|+|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346999999999999999999876
No 246
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.87 E-value=0.031 Score=49.27 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 247
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.86 E-value=0.031 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....|+|.|++|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 248
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.83 E-value=0.035 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|.|+.|+|||||++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 249
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.81 E-value=0.032 Score=51.97 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 250
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.77 E-value=0.16 Score=54.98 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|+|+.|+|||||++.+..-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999763
No 251
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.76 E-value=0.033 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 252
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.75 E-value=0.035 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHh
Q 041007 196 TLPVIWILGNEGIGKTALARQVF 218 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~ 218 (597)
...+|+|+|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 253
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.74 E-value=0.037 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...|+|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 254
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.72 E-value=0.17 Score=52.11 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=32.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
....++|.|.+|+|||+|+..+.++. .+.+-+.++++-+.+....
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rE 196 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTRE 196 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchH
Confidence 45689999999999999999987731 2233456777777765543
No 255
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.67 E-value=0.067 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 256
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.59 E-value=0.036 Score=51.24 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 257
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.57 E-value=0.33 Score=50.26 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=29.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP 238 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 238 (597)
...++.|.|.+|+||||||.+++.+...+ =..++|++....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms 236 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG 236 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence 35699999999999999999998753222 235677765543
No 258
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.56 E-value=0.3 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...|+|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 259
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.53 E-value=0.04 Score=50.04 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....+|+|+|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 260
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.52 E-value=0.038 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 261
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.52 E-value=0.034 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....|+|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999977
No 262
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.52 E-value=0.038 Score=54.44 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=28.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP 238 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 238 (597)
+.++|+|.|-|||||||.+..+.-- ....=..+.-+.+...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPK 87 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSS
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 5689999999999999998877652 2222223555666543
No 263
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.49 E-value=0.043 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.++|+|+|+.|+|||||+..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999883
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.48 E-value=0.029 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHh-C
Q 041007 197 LPVIWILGNEGIGKTALARQVF-D 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~-~ 219 (597)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 265
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.46 E-value=0.21 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|+|++|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998873
No 266
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.46 E-value=0.039 Score=51.02 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 267
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.42 E-value=0.043 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+|.|.|+.|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999873
No 268
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.39 E-value=0.054 Score=58.78 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++|.+..++.+...+.. ...+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~------------g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ------------KRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT------------TCCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccC------------CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4579999888888887762 258999999999999999999873
No 269
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.39 E-value=0.048 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46999999999999999999976
No 270
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.37 E-value=0.24 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+++|.|+|.+|+||||++..++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998873
No 271
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.37 E-value=0.18 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 272
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.36 E-value=0.048 Score=50.51 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++|+|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998773
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.36 E-value=0.024 Score=52.30 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999977
No 274
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.27 E-value=0.042 Score=56.60 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHhhCC----CCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGE----SSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~----~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|.++.++.|...+... ............+-|.++|++|+|||++|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35789888888887666321 0000000011345699999999999999999987
No 275
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.26 E-value=0.14 Score=54.54 Aligned_cols=137 Identities=15% Similarity=0.053 Sum_probs=66.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhh-hcc--CC-eeEEEEecCCCchhhhhhhhhhhc--ccchHHHHHHHHHHhccC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDV-KAN--FD-KRIWVSASYPRDEIRVARDEISVA--RDRDEIRVAKAILESLKG 270 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-~~~wv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~~l~~ 270 (597)
..+++|+|+.|+|||||++.++.-... .+. +. .+.++.-.............+... ...........+++.++.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999874211 111 11 133332111110000111111000 000001223334444433
Q ss_pred CC---Cc---hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 271 SV---SS---QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 271 ~~---~~---~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.. .. ...-+.-.-.|...|..++-+|+||+--+.-+...-..+...+... ..|..||++|.+.
T Consensus 392 ~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 392 IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 21 01 1112333445667777888899999864443344555555555432 2356777777764
No 276
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.25 E-value=0.23 Score=48.44 Aligned_cols=38 Identities=32% Similarity=0.176 Sum_probs=26.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEec
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSAS 236 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 236 (597)
..+++++|++|+||||++..++.. ....-..+.++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 579999999999999999998863 32222235555543
No 277
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.21 E-value=0.091 Score=56.85 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456999999999999999999976
No 278
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.05 Score=49.05 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.17 E-value=0.052 Score=48.38 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..++++|+|+.|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3679999999999999999998873
No 280
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.17 E-value=0.053 Score=52.78 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|+|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999987
No 281
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.16 E-value=0.031 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
++++|+|+.|+|||||+..+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998773
No 282
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.15 E-value=0.14 Score=62.11 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC--
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS-- 273 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-- 273 (597)
...++.|.|++|+||||||.+++.. ....-..++|++.....+... ++.++.+..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~---------------------a~~lGvd~~~L 438 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY---------------------ARKLGVDIDNL 438 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH---------------------HHHTTCCTTTC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH---------------------HHHcCCCHHHe
Confidence 4679999999999999999999874 332224678888776655411 233333211
Q ss_pred ---chhhHHHHHHHHHHHhc-CceEEEEEecccCC
Q 041007 274 ---SQVEMETVLQYINEFVQ-GKKVLLVLDDLWWN 304 (597)
Q Consensus 274 ---~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~~~ 304 (597)
...+.+++...+....+ .+.-+||+|.+...
T Consensus 439 ~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 439 LCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred EEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHh
Confidence 12345556665554443 45679999998644
No 283
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.12 E-value=0.063 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 284
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.12 E-value=0.049 Score=49.83 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 285
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.12 E-value=0.05 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 286
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.12 E-value=0.29 Score=49.73 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=32.6
Q ss_pred ccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 167 EFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 167 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.++|....++++.+.+..... .. ..|.|.|.+|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~-------~~-~~vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC-------AE-CPVLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT-------CC-SCEEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC-------CC-CCeEEecCCCcCHHHHHHHHHH
Confidence 356666677777776664332 12 3458999999999999998876
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.10 E-value=0.12 Score=61.89 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCC---
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSV--- 272 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~--- 272 (597)
..+++.|.|++|+||||||.+++.. ....=..++|++.....+... ++.++.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~---------------------a~~lGvd~~~L 438 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY---------------------ARKLGVDIDNL 438 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH---------------------HHHTTCCGGGC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH---------------------HHHcCCCHHHe
Confidence 4679999999999999999999874 333334688888776665421 22232211
Q ss_pred --CchhhHHHHHHHHHHHhc-CceEEEEEecccCCC
Q 041007 273 --SSQVEMETVLQYINEFVQ-GKKVLLVLDDLWWNA 305 (597)
Q Consensus 273 --~~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~~~~ 305 (597)
....+.+++...+....+ .+.-+||+|.+....
T Consensus 439 ~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 439 LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 012234555555554443 456799999986543
No 288
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.09 E-value=0.05 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35899999999999999999987
No 289
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.08 E-value=0.045 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+++|+|+.|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 37899999999999999998764
No 290
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.07 E-value=0.27 Score=45.62 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999884
No 291
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.04 E-value=0.17 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=19.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|.|+.|+||||+++.+.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
No 292
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.00 E-value=0.15 Score=46.81 Aligned_cols=110 Identities=11% Similarity=0.056 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc-
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS- 274 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~- 274 (597)
...+..++|+-|.||||.+....++... ......++ ....+ . ..-...+...++.....
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~-k~~~d--~----------------R~ge~~i~s~~g~~~~a~ 86 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVF-KPCID--N----------------RYSEEDVVSHNGLKVKAV 86 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEE-ECC-----------------------------------CCEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEE-EeccC--C----------------cchHHHHHhhcCCeeEEe
Confidence 3468899999999999999888774322 22333333 21111 1 11111233333221110
Q ss_pred -hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 275 -QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 275 -~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
..+.. .+.+.+.++--+|++|.++..+ .+.++.+....+ .|..||+|.++.
T Consensus 87 ~~~~~~----~~~~~~~~~~dvViIDEaQF~~-~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 87 PVSASK----DIFKHITEEMDVIAIDEVQFFD-GDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp ECSSGG----GGGGGCCSSCCEEEECCGGGSC-TTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred ecCCHH----HHHHHHhcCCCEEEEECcccCC-HHHHHHHHHHhh---CCCEEEEEeccc
Confidence 00111 1222223333499999997754 334544433222 377999998865
No 293
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.97 E-value=0.055 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 294
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.97 E-value=0.054 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+.|.|.|++|+||||||.++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999874
No 295
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.96 E-value=0.087 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|.+|+|||||+..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999875
No 296
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.92 E-value=0.06 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||.+.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999976
No 297
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.91 E-value=0.9 Score=45.49 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+.|+|+|..|+|||||...+...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999874
No 298
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.90 E-value=0.051 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999977
No 299
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.89 E-value=0.051 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999877
No 300
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.88 E-value=0.091 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|.|++|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999863
No 301
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.87 E-value=0.033 Score=54.33 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=18.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 302
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.87 E-value=0.064 Score=55.22 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+...+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999999873
No 303
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.86 E-value=0.054 Score=48.53 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999873
No 304
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.86 E-value=0.085 Score=50.81 Aligned_cols=52 Identities=17% Similarity=0.072 Sum_probs=31.8
Q ss_pred HHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 282 LQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 282 ~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
.-.|...|..++-+|+||+--..-+...-..+...+... ..|..||++|.+.
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl 204 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 334666677788899999864443344444455444332 2367777777765
No 305
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.83 E-value=0.057 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+||||++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 306
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.82 E-value=1.1 Score=41.74 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=26.1
Q ss_pred chhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 171 RNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 171 R~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
|+...+.+..++.. .-+.|+|+.|.|||.+|..+..
T Consensus 95 ~~~Q~~ai~~~~~~-------------~~~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 95 RDYQEKALERWLVD-------------KRGCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp CHHHHHHHHHHTTT-------------SEEEEEESSSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhC-------------CCEEEEeCCCCCHHHHHHHHHH
Confidence 55555666655531 2378899999999999988765
No 307
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.79 E-value=0.065 Score=50.24 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 308
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.35 Score=52.05 Aligned_cols=136 Identities=8% Similarity=-0.033 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhh-cc-C-C-eeEEEEecCCCchhhhhhhhhh-h-cccchHHHHHHHHHHhccCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVK-AN-F-D-KRIWVSASYPRDEIRVARDEIS-V-ARDRDEIRVAKAILESLKGS 271 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~-F-~-~~~wv~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~il~~l~~~ 271 (597)
.+++|.|+.|+|||||++.++--..-. +. . . .+.++.-.............+. . ............+++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999997632111 11 0 0 1222221100000000001000 0 00001123344556655532
Q ss_pred C------CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCC--CCCcEEEEEccCC
Q 041007 272 V------SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSG--SEGSRILVTRSGG 333 (597)
Q Consensus 272 ~------~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~--~~gs~IIvTtR~~ 333 (597)
. .....-+.-.-.|...|..++=+|+||.--..-+...-..+...+... ..|..||++|.+.
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl 528 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF 528 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 1 111222333445677788889999999864333233334444444331 2366777777654
No 309
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.72 E-value=0.56 Score=55.60 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....|+|+|+.|+|||||++.+++
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 346899999999999999999976
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.66 E-value=0.067 Score=52.28 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457999999999999999999887
No 311
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.65 E-value=0.062 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 312
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.62 E-value=0.29 Score=49.36 Aligned_cols=46 Identities=26% Similarity=0.445 Sum_probs=33.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 166 LEFHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 166 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|....+.++...+..... ....|.|+|.+|+||+++|+.+.+
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~--------~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK--------SKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT--------SCSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc--------cchhheEEeCCCchHHHHHHHHHH
Confidence 3477887777776666543322 223577999999999999999876
No 313
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.60 E-value=0.47 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...++..|.|.+|.||||+..+.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4678999999999999999999886
No 314
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.60 E-value=0.44 Score=44.62 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEE
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWV 233 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 233 (597)
...|+|.|+.|+||||+++.+..... ..++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeee
Confidence 46899999999999999999987422 2345534433
No 315
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.59 E-value=0.43 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 316
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.58 E-value=0.062 Score=49.62 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 317
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.57 E-value=0.059 Score=52.98 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
++|+|+|+.|+||||||..++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 318
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.56 E-value=0.063 Score=49.99 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 319
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.56 E-value=0.14 Score=52.54 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCC----eeEEEEecCCCch
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFD----KRIWVSASYPRDE 241 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~~~~~~~~ 241 (597)
...++|.|.+|+|||+|+.++.+. ...+-+ .++++-+.+....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~E 197 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEE 197 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHH
Confidence 456789999999999999998874 222223 4566666655433
No 320
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.53 E-value=0.049 Score=50.14 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||++.++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 321
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.51 E-value=0.48 Score=43.59 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 322
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.51 E-value=0.16 Score=60.79 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=58.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCC-
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVS- 273 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~- 273 (597)
+..++|-|+|+.|+||||||.++.. .....=...+|+.+....+. . .++.++.+..
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~----------------~-----~~~~~Gv~~~~ 1485 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDP----------------I-----YARKLGVDIDN 1485 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCH----------------H-----HHHHTTCCGGG
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCH----------------H-----HHHHcCCCHHH
Confidence 5678999999999999999999987 44445566788887766655 1 1455554422
Q ss_pred ----chhhHHHHHHHHHHHhc-CceEEEEEeccc
Q 041007 274 ----SQVEMETVLQYINEFVQ-GKKVLLVLDDLW 302 (597)
Q Consensus 274 ----~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~ 302 (597)
.++..++....+...++ +..-+||+|-|-
T Consensus 1486 l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1486 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred eEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHH
Confidence 23333555555666665 566799999873
No 323
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.49 E-value=0.07 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46999999999999999999877
No 324
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.47 E-value=0.073 Score=46.68 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 325
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.40 E-value=0.077 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999987
No 326
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.37 E-value=0.075 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999975
No 327
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.36 E-value=0.066 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 328
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.29 E-value=0.072 Score=48.14 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.-.|+|+|++|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 329
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.27 E-value=0.079 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||.+.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999987
No 330
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.21 E-value=0.2 Score=59.43 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....++|+|+.|+|||||++.+...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 4568999999999999999999774
No 331
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.20 E-value=0.98 Score=56.81 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+-|.++|++|+|||++|+.+..
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~ 1289 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALR 1289 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 6788999999999999977765
No 332
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.15 E-value=0.13 Score=48.98 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 176 QKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 176 ~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+..||.... +....|.|+|++|+|||.+|..+++
T Consensus 91 ~~l~~~l~~~~--------~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKF--------GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCS--------TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCC--------CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 44667776321 2345799999999999999999987
No 333
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.15 E-value=0.083 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|++|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999986
No 334
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.13 E-value=0.07 Score=48.32 Aligned_cols=24 Identities=21% Similarity=-0.036 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+..++|+.|.||||.+....++
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 479999999999999999888774
No 335
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.13 E-value=0.11 Score=46.88 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999875
No 336
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.11 E-value=0.58 Score=52.96 Aligned_cols=132 Identities=16% Similarity=0.031 Sum_probs=66.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCC---eeEEEEecCCC---chhhhhhhhhhhcccchHHHHHHHHHHhccC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFD---KRIWVSASYPR---DEIRVARDEISVARDRDEIRVAKAILESLKG 270 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~wv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 270 (597)
..+++|+|+.|+|||||.+.+..- .+. .++ ..-.+.+.+.. .........+.. ...+.......+++.++.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~-~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE-SGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHT-TCSSCHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHH-hhcCHHHHHHHHHHHcCC
Confidence 458999999999999999999731 111 111 00012222211 000000111100 000003334556666654
Q ss_pred CC-------CchhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 271 SV-------SSQVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 271 ~~-------~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
.. .....-+...-.|...+..++-+|+||.--+.-+...-..+...+.. .|..||++|.+.
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl 605 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDS 605 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCH
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 21 01111222333455566677889999986544335555556666655 467788887764
No 337
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.09 E-value=0.079 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+||||++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 338
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.07 E-value=0.087 Score=49.97 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999976
No 339
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.07 E-value=0.45 Score=49.21 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=29.3
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHhCChhhhccCC-eeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALA-RQVFDDSDVKANFD-KRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~~~~~~~~ 241 (597)
....++|.|..|+|||+|+ ..+.+. .+-+ .++++-+.+....
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~e 204 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKAST 204 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHH
Confidence 3467899999999999996 466662 2233 3567777766544
No 340
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.05 E-value=0.082 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 457889999999999999999975
No 341
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.04 E-value=0.075 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...|+|+|++|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999764
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.04 E-value=0.13 Score=45.47 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999764
No 343
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.04 E-value=0.085 Score=47.65 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.....|+|+|.+|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999875
No 344
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.03 E-value=0.11 Score=46.59 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999999875
No 345
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.01 E-value=0.074 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|.|+.|+|||||++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999877
No 346
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.88 E-value=0.33 Score=50.34 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHhCChhhhccCCe-eEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALA-RQVFDDSDVKANFDK-RIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~~~~~~~~ 241 (597)
....++|.|.+|+|||+|| ..+.+.. .-+. ++++-+.+....
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~E 217 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSA 217 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHH
Confidence 3567899999999999996 4677732 2453 466777765543
No 347
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.85 E-value=0.092 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
+-|+|.|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 348
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.82 E-value=0.094 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999976
No 349
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.81 E-value=0.1 Score=48.98 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999876
No 350
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.78 E-value=0.31 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHH
Q 041007 196 TLPVIWILGNEGIGKTALARQV 217 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v 217 (597)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999988
No 351
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.70 E-value=0.11 Score=48.51 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 352
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.69 E-value=0.093 Score=46.16 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999999875
No 353
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.56 E-value=0.07 Score=57.60 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.|.++|++|+|||+||+.+++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 6899999999999999999884
No 354
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.52 E-value=0.41 Score=50.31 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc
Q 041007 177 KILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD 240 (597)
Q Consensus 177 ~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 240 (597)
+.++.|..-. ....++|.|..|+|||+|+.++.+. .+-+.++++-+.+...
T Consensus 221 rvID~l~Pig---------rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~ 271 (600)
T 3vr4_A 221 RVIDTFFPVT---------KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGN 271 (600)
T ss_dssp HHHHHHSCCB---------TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHH
T ss_pred hhhhccCCcc---------CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHH
Confidence 4566666433 4578999999999999999998773 2335677777776543
No 355
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.49 E-value=0.17 Score=49.51 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=30.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc
Q 041007 195 PTLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD 240 (597)
Q Consensus 195 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 240 (597)
...++|+|+|-||+||||+|..++.. ....=..++-|.+....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCCC
Confidence 35689999999999999999988773 332222456677664433
No 356
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.48 E-value=0.51 Score=43.13 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCe
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDK 229 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~ 229 (597)
+.|+|-|..|+||||+++.+.. .....++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCCE
Confidence 4789999999999999999887 34444443
No 357
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.46 E-value=0.099 Score=45.56 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999999764
No 358
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.39 E-value=0.17 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
-.|.+.|.||+||||+|..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34888999999999999888874
No 359
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.38 E-value=0.1 Score=52.82 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999986
No 360
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.34 E-value=0.11 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||++.++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999887
No 361
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.33 E-value=0.1 Score=45.23 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999754
No 362
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.32 E-value=0.32 Score=50.37 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=29.1
Q ss_pred CccEEEEEcCCCCcHHHHHH-HHhCChhhhccCCe-eEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALAR-QVFDDSDVKANFDK-RIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~-~v~~~~~~~~~F~~-~~wv~~~~~~~~ 241 (597)
....++|.|.+|+|||+||. .+.+. . +-+. ++++-+.+....
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~E 204 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQST 204 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchH
Confidence 45678999999999999964 66663 2 3443 466777765443
No 363
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.27 E-value=0.11 Score=45.39 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999875
No 364
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.25 E-value=0.11 Score=45.37 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 365
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.19 E-value=0.11 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.765 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 366
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.19 E-value=0.14 Score=45.67 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999875
No 367
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.18 E-value=0.13 Score=47.28 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|++|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999998764
No 368
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.16 E-value=0.11 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 369
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.16 E-value=0.13 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+.+|+|+.|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998854
No 370
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.15 E-value=0.11 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 371
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.12 E-value=0.13 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..--|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999999764
No 372
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.11 E-value=0.12 Score=48.74 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+..|+|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 373
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.10 E-value=0.13 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...-|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998764
No 374
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.07 E-value=0.11 Score=51.14 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 194 KPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 194 ~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
++....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456789999999999999999999764
No 375
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.02 E-value=0.25 Score=50.63 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....++|.|.+|+|||+|+.++++.
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~ 170 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQ 170 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHH
Confidence 3457789999999999999998874
No 376
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.99 E-value=0.1 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...-|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999864
No 377
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.82 E-value=0.33 Score=50.77 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=32.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 241 (597)
....++|.|..|+|||+|+.++.+. .+-+.++++-+.+....
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~E 267 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNE 267 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSH
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHH
Confidence 4568999999999999999998662 23356788888877665
No 378
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.73 E-value=0.12 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999764
No 379
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.70 E-value=0.13 Score=45.38 Aligned_cols=25 Identities=32% Similarity=0.601 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...-|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999875
No 380
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.70 E-value=0.13 Score=44.71 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.-|+|.|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998754
No 381
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.70 E-value=0.3 Score=50.65 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHhCChhhhccCC-eeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALA-RQVFDDSDVKANFD-KRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~~~~~~~~ 241 (597)
....++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+....
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~E 205 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASS 205 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHH
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchH
Confidence 4567899999999999996 4677742 234 3466777665443
No 382
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.67 E-value=0.11 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..++++|+|+.|+|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 467999999999999999999985
No 383
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.66 E-value=0.12 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999874
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.65 E-value=0.096 Score=54.00 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+.+|+|+|++|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998774
No 385
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.64 E-value=0.18 Score=46.84 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999875
No 386
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.60 E-value=0.13 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999999875
No 387
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.57 E-value=0.73 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHh
Q 041007 196 TLPVIWILGNEGIGKTALARQVF 218 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~ 218 (597)
...+++|+|+.|.|||||.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 45799999999999999999875
No 388
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.56 E-value=0.13 Score=44.54 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998754
No 389
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.55 E-value=0.71 Score=47.92 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=29.8
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHhCChhh----hccCC-eeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALA-RQVFDDSDV----KANFD-KRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~~~~~~~~ 241 (597)
....++|.|.+|+|||+|| ..+.+.... ..+-+ .++++-+.+....
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~E 212 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRST 212 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHH
Confidence 4567899999999999995 456663221 01234 3667777765544
No 390
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.54 E-value=0.14 Score=44.60 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998754
No 391
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.52 E-value=0.17 Score=44.99 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..--|+|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998754
No 392
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.43 E-value=0.15 Score=51.10 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|++|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 393
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.42 E-value=0.14 Score=44.42 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
-|+|+|.+|+|||||...+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999865
No 394
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.40 E-value=0.16 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 46999999999999999999975
No 395
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.39 E-value=0.22 Score=48.69 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 041007 198 PVIWILGNEGIGKTALARQVF 218 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~ 218 (597)
.+++|.|+.|+|||||.+.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999997
No 396
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.39 E-value=0.86 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 041007 198 PVIWILGNEGIGKTALARQVF 218 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~ 218 (597)
.++.|+|+.|.||||++..+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 589999999999999766554
No 397
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.33 E-value=0.14 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 398
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.32 E-value=0.14 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999887654
No 399
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.30 E-value=0.14 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999863
No 400
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.30 E-value=0.24 Score=50.99 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhcc--CCeeEEEEecCCCch
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKAN--FDKRIWVSASYPRDE 241 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~~~~~~~~ 241 (597)
....++|.|.+|+|||+|+..++++...... =+.++++-+.+....
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~E 198 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEE 198 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHH
Confidence 3457788999999999999999875332211 134566666655433
No 401
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.29 E-value=0.17 Score=45.77 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..--|+|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999987764
No 402
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.25 E-value=0.1 Score=47.75 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998764
No 403
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.22 E-value=0.093 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+...|+|.|..|+||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998877
No 404
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.19 E-value=0.15 Score=44.51 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46889999999999999998753
No 405
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.19 E-value=0.15 Score=45.10 Aligned_cols=25 Identities=36% Similarity=0.694 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998764
No 406
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.17 E-value=0.15 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.657 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 407
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.14 E-value=0.15 Score=44.89 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...-|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998753
No 408
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.13 E-value=0.17 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|++|+|||||...+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999875
No 409
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.10 E-value=0.14 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998754
No 410
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.03 E-value=0.27 Score=46.92 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD 240 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 240 (597)
++|+|.|-||+||||+|..+... ....=..++-+++....+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q~~ 42 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTTSC
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCCCC
Confidence 47888999999999999888763 322222456666654443
No 411
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.96 E-value=0.16 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..-|.|.|++|+||||||.++..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 412
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.95 E-value=0.17 Score=45.18 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998764
No 413
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.94 E-value=0.16 Score=44.18 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998753
No 414
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.94 E-value=0.16 Score=45.55 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999988764
No 415
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.88 E-value=0.16 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999998763
No 416
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.87 E-value=0.16 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|+|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999866
No 417
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.85 E-value=0.22 Score=52.34 Aligned_cols=45 Identities=4% Similarity=-0.057 Sum_probs=30.8
Q ss_pred cccchhhHHHHHHHhhCCCCCCcCCCCCCccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 168 FHGRNAEKQKILQLLKGESSDEESGSKPTLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 168 ~vGR~~e~~~l~~~L~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+.|.+-.+.+.+..... ..+..+|.+.|++|+||||+|+.+...
T Consensus 374 ~f~rpeV~~vLr~~~~~~--------~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPR--------PKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TTSCHHHHHHHHHHSCCG--------GGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccc--------cccceEEEecccCCCCHHHHHHHHHHH
Confidence 345555555555544211 124578999999999999999999883
No 418
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.76 E-value=0.18 Score=44.86 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCCh
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDS 221 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 221 (597)
....|+|.|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998753
No 419
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=89.74 E-value=0.35 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
+.+.|.++.|.|||.++.....
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999998877654
No 420
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.73 E-value=0.14 Score=52.20 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 346999999999999999999987
No 421
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.65 E-value=0.18 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||++.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999877
No 422
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.64 E-value=0.18 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999874
No 423
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.62 E-value=0.18 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998764
No 424
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.61 E-value=0.15 Score=45.17 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467899999999999999998743
No 425
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.60 E-value=0.18 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 426
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.59 E-value=0.14 Score=45.41 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999864
No 427
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.57 E-value=0.18 Score=45.51 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999764
No 428
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.57 E-value=0.18 Score=44.44 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998753
No 429
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.53 E-value=0.15 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 041007 199 VIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
-|+|+|.+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4788999999999999998754
No 430
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.53 E-value=0.17 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..+++|+|+.|+|||||++.+..-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999873
No 431
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.53 E-value=0.18 Score=45.08 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999754
No 432
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.51 E-value=0.37 Score=56.98 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....++|+|+.|+|||||++.+..-
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998763
No 433
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.51 E-value=0.19 Score=45.61 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.51 E-value=0.14 Score=45.32 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
--|+|+|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998764
No 435
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.50 E-value=0.28 Score=48.91 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999999875
No 436
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.49 E-value=0.18 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999764
No 437
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.48 E-value=0.19 Score=45.22 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.-|+|+|.+|+|||||...+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 438
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.48 E-value=0.16 Score=46.80 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999875
No 439
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.47 E-value=0.24 Score=43.20 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999653
No 440
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.46 E-value=0.22 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 346899999999999999999987
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.45 E-value=0.2 Score=45.87 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 442
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.39 E-value=0.18 Score=44.78 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998754
No 443
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.32 E-value=0.2 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 444
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.31 E-value=0.19 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 445
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.30 E-value=0.19 Score=44.57 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999998754
No 446
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.28 E-value=1 Score=53.29 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+++|+|+.|+|||||++.++.-
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999763
No 447
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.28 E-value=0.34 Score=46.86 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCc
Q 041007 198 PVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRD 240 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 240 (597)
++|+|.|-||+||||+|..+... ....=..++-|++....+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q~~ 43 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPKAD 43 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSSSC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCCCC
Confidence 67888999999999999988773 322212355666654433
No 448
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.27 E-value=0.19 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 449
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.26 E-value=0.19 Score=44.54 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999998754
No 450
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.22 E-value=0.19 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.--|+|+|.+|+|||||.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999976654
No 451
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.21 E-value=0.31 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+++|.|++|+|||||.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 58999999999999999999873
No 452
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.17 E-value=0.18 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...++|+|+.|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 453
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.16 E-value=0.2 Score=45.39 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999999864
No 454
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.16 E-value=0.21 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567999999999999999999875
No 455
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.14 E-value=0.24 Score=44.52 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..--|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999998753
No 456
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.09 E-value=0.19 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998754
No 457
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.08 E-value=0.17 Score=49.48 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 041007 199 VIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 199 vv~I~G~gGiGKTtLA~~v~~ 219 (597)
-|+|+|+.|+|||||...++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999765
No 458
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.07 E-value=0.2 Score=45.16 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998764
No 459
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.03 E-value=0.24 Score=44.89 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998754
No 460
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.00 E-value=0.2 Score=45.59 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999998754
No 461
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.99 E-value=0.21 Score=44.08 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998754
No 462
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.98 E-value=0.49 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 5678999999999999999999874
No 463
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=88.98 E-value=0.21 Score=45.90 Aligned_cols=24 Identities=29% Similarity=0.399 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999999874
No 464
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.96 E-value=0.2 Score=45.72 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999764
No 465
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.91 E-value=0.21 Score=44.84 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999998763
No 466
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.86 E-value=0.21 Score=45.34 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467899999999999999998764
No 467
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.80 E-value=0.22 Score=44.60 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999754
No 468
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.80 E-value=0.26 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...+|.|.|++|+||||+|+.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999873
No 469
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.77 E-value=0.21 Score=45.22 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...-|+|+|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3457899999999999999998764
No 470
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.73 E-value=0.22 Score=44.90 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999764
No 471
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.73 E-value=0.28 Score=43.76 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999864
No 472
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.69 E-value=0.22 Score=44.78 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998754
No 473
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.67 E-value=0.22 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999998764
No 474
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.66 E-value=1.1 Score=41.35 Aligned_cols=106 Identities=12% Similarity=0.062 Sum_probs=53.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCCCchhhhhhhhhhhcccchHHHHHHHHHHhccCCCCc--
Q 041007 197 LPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYPRDEIRVARDEISVARDRDEIRVAKAILESLKGSVSS-- 274 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~-- 274 (597)
..+..++|+-|.||||.+....++.. .......++-..-+. .. - ..+...++.....
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~D~-Ry------------------g-~~i~sr~G~~~~a~~ 77 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAKDT-RY------------------S-SSFCTHDRNTMEALP 77 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETTCC-CC------------------------------CEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecCCc-cc------------------h-HHHHhhcCCeeEEEe
Confidence 46889999999999988877766322 223333333322211 10 0 1222222221100
Q ss_pred hhhHHHHHHHHHHHhcCceEEEEEecccCCCCcchHHHHHHhhcCCCCCcEEEEEccCC
Q 041007 275 QVEMETVLQYINEFVQGKKVLLVLDDLWWNAYPRYWEQLMYSLKSGSEGSRILVTRSGG 333 (597)
Q Consensus 275 ~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~~~~l~~~l~~~~~gs~IIvTtR~~ 333 (597)
..+..++...+ ++--+|++|.++-.. ...++...+.. .|..||+|.++.
T Consensus 78 i~~~~di~~~~-----~~~dvViIDEaQF~~---~v~el~~~l~~--~gi~VI~~GL~~ 126 (234)
T 2orv_A 78 ACLLRDVAQEA-----LGVAVIGIDEGQFFP---DIVEFCEAMAN--AGKTVIVAALDG 126 (234)
T ss_dssp ESSGGGGHHHH-----TTCSEEEESSGGGCT---THHHHHHHHHH--TTCEEEEECCSB
T ss_pred cCCHHHHHHHh-----ccCCEEEEEchhhhh---hHHHHHHHHHh--CCCEEEEEeccc
Confidence 00111122221 233499999997765 24445545544 677999999884
No 475
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.65 E-value=0.19 Score=56.39 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCccccchhhHHHHHHHhhCCCCCC---cCCCCCCccEEEEEcCCCCcHHHHHHHHhC
Q 041007 165 PLEFHGRNAEKQKILQLLKGESSDE---ESGSKPTLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 165 ~~~~vGR~~e~~~l~~~L~~~~~~~---~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
-..++|.+..++.|.+.+....... ...+-.....+.++|++|+|||+||+.+++
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 3557788888888888775321100 000112345688999999999999999998
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.62 E-value=0.23 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999764
No 477
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.58 E-value=0.23 Score=44.55 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.--|+|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998754
No 478
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.56 E-value=0.19 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.-.|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999875
No 479
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.54 E-value=0.24 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|.++|++|+||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 480
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.54 E-value=0.23 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999864
No 481
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.53 E-value=0.24 Score=44.23 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998753
No 482
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.50 E-value=0.23 Score=44.53 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998764
No 483
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.48 E-value=0.21 Score=45.57 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+|+|.|+.|+||||+++.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5999999999999999999987
No 484
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.45 E-value=0.24 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..-.++|.|++|+||||+|+.+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 345789999999999999999876
No 485
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.44 E-value=0.26 Score=46.82 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999764
No 486
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.35 E-value=0.24 Score=44.12 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 041007 200 IWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 200 v~I~G~gGiGKTtLA~~v~~~ 220 (597)
+.|+|.+|+|||++|.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999873
No 487
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.34 E-value=0.24 Score=44.77 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999998754
No 488
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.31 E-value=0.26 Score=44.92 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998753
No 489
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.30 E-value=0.2 Score=49.72 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 041007 198 PVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
.+++|+|+.|+|||||++.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 490
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.30 E-value=0.26 Score=47.22 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999764
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.20 E-value=0.16 Score=45.15 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=10.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998764
No 492
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.17 E-value=0.26 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
.+++|+|++|+|||||...+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 58999999999999999999873
No 493
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.17 E-value=0.6 Score=46.53 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=27.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhh--ccCCeeEEEEec
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVK--ANFDKRIWVSAS 236 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~~~ 236 (597)
..+++.+.|.||+||||+|..++.. .. ..=..++-++..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~--la~~~~g~~vllid~D 57 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQ--LALAQPNEQFLLISTD 57 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHH--HHHHCTTSCEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH--HHHhcCCCeEEEEECC
Confidence 4689999999999999999888763 33 222235556654
No 494
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.16 E-value=0.45 Score=48.71 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+++|+|+.|+|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999876
No 495
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.12 E-value=0.28 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|.|.|++|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999999999977
No 496
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.11 E-value=0.35 Score=43.86 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
...+|+|+|++|+||+++|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988754
No 497
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.07 E-value=0.62 Score=46.13 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhCChhhhccCCeeEEEEecCC
Q 041007 196 TLPVIWILGNEGIGKTALARQVFDDSDVKANFDKRIWVSASYP 238 (597)
Q Consensus 196 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~ 238 (597)
..+++.+.|-||+||||+|..++.. ....=..++-+++...
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~--la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQ--LAKVRRSVLLLSTDPA 55 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH--HTTSSSCEEEEECCSS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHH--HHhCCCcEEEEECCCC
Confidence 4678899999999999999888762 2222233555665533
No 498
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.07 E-value=0.25 Score=44.87 Aligned_cols=24 Identities=38% Similarity=0.655 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhCC
Q 041007 197 LPVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998754
No 499
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.04 E-value=0.26 Score=44.12 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 041007 198 PVIWILGNEGIGKTALARQVFDD 220 (597)
Q Consensus 198 ~vv~I~G~gGiGKTtLA~~v~~~ 220 (597)
--|+|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 500
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.01 E-value=0.32 Score=41.94 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhC
Q 041007 197 LPVIWILGNEGIGKTALARQVFD 219 (597)
Q Consensus 197 ~~vv~I~G~gGiGKTtLA~~v~~ 219 (597)
..+.+|+|+.|.|||||...++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999888753
Done!