BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041009
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAA 123
+ LH+A++ G++ +VK LL+ D + D +GR PLHLAA GH++V++ L A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
+A+ G T LHL ++ LE +K LLE D +NAKD G T LHLA + +E +K
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 184 LLTTSTA 190
LL + A
Sbjct: 119 LLLEAGA 125
Score = 73.6 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/134 (40%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
+GR PLHLAA GH++V++ L A D +A+ G T LHL ++ LE +K LLE
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDT 214
D +NAKD G T LHLA + +E +KLL + A +VNA NG T + A++
Sbjct: 60 D---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGH-- 113
Query: 215 KDWDIGELLRRAGA 228
++ +LL AGA
Sbjct: 114 --LEVVKLLLEAGA 125
Score = 72.4 bits (176), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + K +L + + D + LH+A++ G++ +VK LL+ D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
+ D +GR PLHLAA GH++V++ L A D +A+ G T LHL ++ LE +K L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 150 LE 151
LE
Sbjct: 121 LE 122
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQ 83
N ETPLH+AA GH + AK +L+ K ++ A+ D + + LH A++ G+ +VK LL+
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLE 101
Query: 84 VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI-WGETILHLCVKHNQ 142
+ T G PLH+AA GH++ + LA + +A+ A + G T LH+ K+ +
Sbjct: 102 NNANPNLATTA-GHTPLHIAAREGHVETV--LALLEKEASQACMTKKGFTPLHVAAKYGK 158
Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
+ + LLE NA G+T LH+AV ++ +KLL ++ NG+T
Sbjct: 159 VRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYT 214
Query: 203 AWDILAQSKRDTKDWDIGE-LLRRAGAISAQDLQ 235
I A+ + ++ LL+ G+ +A+ +Q
Sbjct: 215 PLHIAAKQNQ----VEVARSLLQYGGSANAESVQ 244
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 19/203 (9%)
Query: 30 TPLHVAALLGHEDFAKEILRQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
TPLHVA+ +GH K +L++ P ++ + + + LH+A++ G+ + K LLQ
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQN-KA 71
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEA 145
K + D + PLH AA GH ++++ L A P+ A+ G T LH+ + +E
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT---AGHTPLHIAAREGHVET 128
Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD 205
+ LLE + K G T LH+A ++ +LL A NA NG T
Sbjct: 129 VLALLEKEASQACMTKK---GFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLH 184
Query: 206 ILAQSKRDTKDWDIGELLRRAGA 228
+ + DI +LL G
Sbjct: 185 VAVHH----NNLDIVKLLLPRGG 203
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 15/201 (7%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDS--RKSSALHIASQKGYVGIVKALLQVIPD 87
TPLHVA + D K +L PR + LHIA+++ V + ++LLQ
Sbjct: 181 TPLHVAVHHNNLDIVKLLL---PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALK 147
+++ V G PLHLAA GH +++ L + + G T LHL + +
Sbjct: 238 ANAES-VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVAD 295
Query: 148 FLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDIL 207
L+++ +++A G T LH+A I+ +K L A +VNA T G++
Sbjct: 296 VLIKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSPLHQA 351
Query: 208 AQSKRDTKDWDIGELLRRAGA 228
AQ DI LL + GA
Sbjct: 352 AQQGH----TDIVTLLLKNGA 368
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ--V 84
+ TPLHVA+ G+ K +L+ + + + S LH A+Q+G+ IV LL+
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
P++ S DG PL +A G+I V + L
Sbjct: 369 SPNEVSS---DGTTPLAIAKRLGYISVTDVL 396
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
L +PLH AA GH D +L+ E+ S ++ L IA + GY+ + +L+V+
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTD-VLKVVT 400
Query: 87 DKCS 90
D+ S
Sbjct: 401 DETS 404
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 9/133 (6%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
D G+ PLHLAA++GH++++E L + D +A + G+T LHL + LE ++ LL+N
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM-GDTPLHLAALYGHLEIVEVLLKN 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
D +NA D YG T LHLA +E +++L A +VNA G TA+DI
Sbjct: 103 GAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI----SI 154
Query: 213 DTKDWDIGELLRR 225
D + D+ E+L++
Sbjct: 155 DNGNEDLAEILQK 167
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 35 AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G +D + ++ + E DS K+ LH+A+ KG++ IV+ LL+ D + D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTP-LHLAAIKGHLEIVEVLLKHGAD-VNAADK 78
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
G PLHLAA+ GH++++E L + D +A +G T LHL LE ++ LL+
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 155 DSELLNAKDDYGMTILHLAV 174
D +NA+D +G T +++
Sbjct: 138 D---VNAQDKFGKTAFDISI 154
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
+TPLH+AA+ GH + + +L+ + D + LH+A+ G++ IV+ LL+ D
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLKNGAD 105
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
+ TD G PLHLAA GH++++E L + D +A+ +G+T + +
Sbjct: 106 -VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISI 154
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
+ +TPLH+AAL GH + + +L+ + D+ + LH+A+ G++ IV+ LL+
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 87 DKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
D + D G+ ++ G+ D+ E L +
Sbjct: 138 D-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
Q + ++ L+ N D +NA+DD G T LHLA +E +++L A +VNA G
Sbjct: 26 QDDEVRILMANGAD---VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA-DVNAADKMGD 81
Query: 202 T 202
T
Sbjct: 82 T 82
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
D DG PLHLAA GH++++E L +A D +A+ G T LHL + LE ++ LL+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
D +NAKD G T LHLA + +E +++L + A +VNA G T +D+
Sbjct: 91 GAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAI---- 142
Query: 213 DTKDWDIGELLRRA 226
D + DI E+L++A
Sbjct: 143 DNGNEDIAEVLQKA 156
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + + D + LH+A+++G++ IV+ LL+ D
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 94
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
+ D DG PLHLAA GH++++E L +A D +A+ +G+T L +
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAI 142
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAV 196
+ Q + ++ L+ N D +NAKD G T LHLA + +E +++L + A +VNA
Sbjct: 9 AARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAK 64
Query: 197 TANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
+G+T + A+ +I E+L +AGA ++A+D
Sbjct: 65 DKDGYTPLHLAAREGH----LEIVEVLLKAGADVNAKD 98
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
D DG PLHLAA GH++++E L +A D +A+ G T LHL + LE ++ LL+
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
D +NAKD G T LHLA + +E +++L + A +VNA G TA+DI
Sbjct: 103 GAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTAFDI----SI 154
Query: 213 DTKDWDIGELLR 224
D + D+ E+L+
Sbjct: 155 DNGNEDLAEILQ 166
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + + D + LH+A+++G++ IV+ LL+ D
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
+ D DG PLHLAA GH++++E L +A D +A+ +G+T + +
Sbjct: 107 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISI 154
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAV 196
+ Q + ++ L+ N D +NAKD G T LHLA + +E +++L + A +VNA
Sbjct: 21 AARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAK 76
Query: 197 TANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
+G+T + A+ +I E+L +AGA ++A+D
Sbjct: 77 DKDGYTPLHLAAREGH----LEIVEVLLKAGADVNAKD 110
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
D DG PLHLAA GH++++E L +A D +A+ G T LHL + LE ++ LL+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
D +NAKD G T LHLA + +E +++L + A +VNA G T +D+ +
Sbjct: 91 GAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAIREGH 146
Query: 213 DTKDWDIGELLRRA 226
+ DI E+L++A
Sbjct: 147 E----DIAEVLQKA 156
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + + D + LH+A+++G++ IV+ LL+ D
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-V 94
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQ 142
+ D DG PLHLAA GH++++E L +A D +A+ +G+T L ++
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAIREGH 146
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200
Q + ++ L+ N D +NAKD G T LHLA + +E +++L + A +VNA +G
Sbjct: 13 GQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDG 68
Query: 201 FTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
+T + A+ +I E+L +AGA ++A+D
Sbjct: 69 YTPLHLAAREGH----LEIVEVLLKAGADVNAKD 98
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
A++ G VK LL+ D + +D DG+ PLHLAA GH +V++ L D +A+
Sbjct: 11 AAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDS 68
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
G+T LHL ++ E +K LL D NAKD G T LHLA + E +KLL +
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
A + N ++G T D+ R+ + ++ +LL + G
Sbjct: 126 GA-DPNTSDSDGRTPLDLA----REHGNEEVVKLLEKQGG 160
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
Query: 35 AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G++D K++L + DS + LH+A++ G+ +VK LL D + D
Sbjct: 11 AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA-KDS 68
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
DG+ PLHLAA GH +V++ L D +A+ G+T LHL ++ E +K LL
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
D N D G T L LA E +KLL
Sbjct: 128 DP---NTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 28 SETPLHVAALLGHEDFAKEILRQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI 85
+TPLH+AA GH++ K +L Q P DS + LH+A++ G+ +VK LL
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 86 PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQL 143
D + D DG+ PLHLAA GH +V++ L A P+ + + G T L L +H
Sbjct: 94 ADPNA-KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD---GRTPLDLAREHGNE 149
Query: 144 EALKFLLENMG 154
E +K L + G
Sbjct: 150 EVVKLLEKQGG 160
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
D G PLHLAA GH++++E L + D +A+ G T LHL + LE ++ LL+N
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
D +NA D +G T LHLA +E +++L + A +VNA G TA+DI
Sbjct: 103 GAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA-DVNAQDKFGKTAFDI----SI 154
Query: 213 DTKDWDIGELLRR 225
D + D+ E+L++
Sbjct: 155 DNGNEDLAEILQK 167
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + + DS + LH+A+++G++ IV+ LL+ D
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLKNGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
+ +D G PLHLAA RGH++++E L + D +A+ +G+T + +
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISI 154
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 9/111 (8%)
Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
+AR G T LHL LE ++ LL+N D +NAKD G+T LHLA +E ++
Sbjct: 41 NARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD---VNAKDSLGVTPLHLAARRGHLEIVE 97
Query: 184 LLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
+L + A +VNA ++GFT + A+ +I E+L + GA ++AQD
Sbjct: 98 VLLKNGA-DVNASDSHGFTPLHLAAKRGH----LEIVEVLLKNGADVNAQD 143
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
+ L TPLH+AA GH + + +L+ + DS + LH+A+++G++ IV+ LL+
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
D + D G+ ++ G+ D+ E L +
Sbjct: 136 GAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
DV G PLHLAA GH++++E L + D +A G T LHL LE ++ LL+N
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
D +NAKDD G+T LHLA +E +++L A +VNA G TA+DI +
Sbjct: 103 GAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISINNGN 158
Query: 213 DTKDWDIGELLRR 225
+ D+ E+L++
Sbjct: 159 E----DLAEILQK 167
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + D+ S+ LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
+ D +G PLHLAA RGH++++E L + D +A+ +G+T + + +N E L +
Sbjct: 108 AKDD-NGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISI-NNGNEDLAEI 164
Query: 150 LENM 153
L+ +
Sbjct: 165 LQKL 168
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 103 AAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK 162
AA G D + L D +A ++ G T LHL LE ++ LL+N D +NA
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVV-GWTPLHLAAYWGHLEIVEVLLKNGAD---VNAY 76
Query: 163 DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGEL 222
D G T LHLA +E +++L + A +VNA NG T + A +I E+
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGA-DVNAKDDNGITPLHLAANRGH----LEIVEV 131
Query: 223 LRRAGA-ISAQD 233
L + GA ++AQD
Sbjct: 132 LLKYGADVNAQD 143
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
+ L TPLH+AA GH + + +L+ + + D + LH+A+ +G++ IV+ LL+
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
D + D G+ ++ G+ D+ E L +
Sbjct: 136 GAD-VNAQDKFGKTAFDISINNGNEDLAEILQK 167
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
TD G PLHLAA GH++++E L + D +A +G T LHL + LE ++ LL+
Sbjct: 43 TDWLGHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
+ D +NAKD G T LHLA D +E +++L A +VNA G TA+DI
Sbjct: 102 HGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI----S 153
Query: 212 RDTKDWDIGELLRR 225
D + D+ E+L++
Sbjct: 154 IDNGNEDLAEILQK 167
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
L TPLH+AA GH + + +L+ + D+ ++ LH+A+ G++ IV+ LL+
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 87 DKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEAL 146
D + D +G PLHLAA GH++++E L + D +A+ +G+T + + N E L
Sbjct: 105 D-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISID-NGNEDL 161
Query: 147 KFLLENM 153
+L+ +
Sbjct: 162 AEILQKL 168
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
+GR PLHLAA GH++V++ L A D +A+ G T LHL ++ LE +K LLE
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
D +NAKD G T LHLA + +E +KLL + A
Sbjct: 60 D---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAA 123
+ LH+A++ G++ +VK LL+ D + D +GR PLHLAA GH++V++ L A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 124 SARLIWGETILHLCVKHNQLEALKFLLE 151
+A+ G T LHL ++ LE +K LLE
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + K +L + + D + LH+A++ G++ +VK LL+ D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARA 118
+ D +GR PLHLAA GH++V++ L A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
TD DG PLHLAA GH++++E L + D ++ L G T LHL LE ++ LL+
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL-TGITPLHLAAATGHLEIVEVLLK 101
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
+ D +NA D+ G T LHLA +E +++L A +VNA G TA+DI
Sbjct: 102 HGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----S 153
Query: 212 RDTKDWDIGELLR 224
D + D+ E+L+
Sbjct: 154 IDNGNEDLAEILQ 166
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + D + LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLKHGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
+ D DG PLHLAA GH++++E L + D +A+ +G+T + +
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
Q + ++ L+ N D +NA D+ G T LHLA ++ +E +++L + A +VNA G
Sbjct: 26 QDDEVRILMANGAD---VNATDNDGYTPLHLAASNGHLEIVEVLLKNGA-DVNASDLTGI 81
Query: 202 TAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
T + A T +I E+L + GA ++A D
Sbjct: 82 TPLHLAAA----TGHLEIVEVLLKHGADVNAYD 110
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
A++ G VK L++ D + +D DGR PLH AA GH ++++ L D +A+
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDS 68
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
G T LH K E +K L+ D +NAKD G T LH A + E +KLL +
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGAD---VNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
A +VN ++G T D+ R+ + +I +LL + G
Sbjct: 126 GA-DVNTSDSDGRTPLDLA----REHGNEEIVKLLEKQGG 160
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 8/152 (5%)
Query: 35 AALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD 93
AA G++D K+++ + A + D R + LH A+++G+ IVK L+ D + D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR--TPLHYAAKEGHKEIVKLLISKGAD-VNAKD 67
Query: 94 VDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENM 153
DGR PLH AA GH ++++ L D +A+ G T LH K E +K L+
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 154 GDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
D +N D G T L LA E +KLL
Sbjct: 127 AD---VNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
TPLH AA GH++ K ++ + + A++ D R + LH A+++G+ IVK L+ D
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR--TPLHYAAKEGHKEIVKLLISKGAD- 95
Query: 89 CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
+ D DGR PLH AA GH ++++ L D ++ G T L L +H E +K
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD-SDGRTPLDLAREHGNEEIVKL 154
Query: 149 LLENMG 154
L + G
Sbjct: 155 LEKQGG 160
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
TD G PLHLAA GH++++E L + D +A I G T LHL LE ++ LL+
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLK 101
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
+ D +NA D +G T LHLA +E +++L A +VNA G TA+DI
Sbjct: 102 HGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----S 153
Query: 212 RDTKDWDIGELLRR 225
D + D+ E+L++
Sbjct: 154 IDNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + +D S+ LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
+ D G PLHLAA+ GH++++E L + D +A+ +G+T + + N E L +
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISID-NGNEDLAEI 164
Query: 150 LENM 153
L+ +
Sbjct: 165 LQKL 168
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
++ + TPLH+AAL+GH + + +L+ + +D+ + LH+A+ G++ IV+ LL+
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 84 VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
D + D G+ ++ G+ D+ E L +
Sbjct: 135 HGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200
Q + ++ L+ N D +NA D G+T LHLA +E +++L A +VNA+ G
Sbjct: 25 GQDDEVRILMANGAD---VNATDASGLTPLHLAATYGHLEIVEVLLKHGA-DVNAIDIMG 80
Query: 201 FT 202
T
Sbjct: 81 ST 82
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
A++ G VK LL+ D + +D DGR PLH AA GH ++++ L D +A+
Sbjct: 11 AAENGNKDRVKDLLENGADPNA-SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDS 68
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
G T LH ++ E +K LL D NAKD G T LH A + E +KLL +
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
A + N ++G T D+ R+ + +I +LL + G
Sbjct: 126 GA-DPNTSDSDGRTPLDLA----REHGNEEIVKLLEKQGG 160
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 35 AALLGHEDFAKEILRQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT 92
AA G++D K++L P + DS + LH A++ G+ IVK LL D +
Sbjct: 11 AAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA-K 66
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
D DGR PLH AA GH ++++ L D +A+ G T LH ++ E +K LL
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
D N D G T L LA E +KLL
Sbjct: 126 GADP---NTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH AA GH++ K +L K DS + LH A++ G+ IVK LL D
Sbjct: 39 TPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALK 147
+ D DGR PLH AA GH ++++ L A P+ + + G T L L +H E +K
Sbjct: 98 A-KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD---GRTPLDLAREHGNEEIVK 153
Query: 148 FLLENMG 154
L + G
Sbjct: 154 LLEKQGG 160
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
TD G PLHLAA GH++++E L + D +A I G T LHL LE ++ LL+
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLK 101
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
+ D +NA D +G T LHLA +E +++L A +VNA G TA+DI
Sbjct: 102 HGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----S 153
Query: 212 RDTKDWDIGELLRR 225
D + D+ E+L++
Sbjct: 154 IDNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + +D S+ LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
+ D G PLHLAA+ GH++++E L + D +A+ +G+T + + N E L +
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISID-NGNEDLAEI 164
Query: 150 LENM 153
L+ +
Sbjct: 165 LQKL 168
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
++ TPLH+AAL+GH + + +L+ + +D+ + LH+A+ G++ IV+ LL+
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 84 VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
D + D G+ ++ G+ D+ E L +
Sbjct: 135 HGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200
Q + ++ L+ N D +NA D G+T LHLA +E +++L A +VNA+ G
Sbjct: 25 GQDDEVRILMANGAD---VNATDASGLTPLHLAATYGHLEIVEVLLKHGA-DVNAIDIXG 80
Query: 201 FT 202
T
Sbjct: 81 ST 82
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
+ +TPLH+AA +GH + + +L+ + LD S+ LH+A+++G++ IV+ LL+
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQ 142
D +D D G PLHLAA GH++++E L + D +A+ +G+T + + +
Sbjct: 103 GADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGN 158
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 35 AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G +D + ++ + E D+ + LH+A++ G++ IV+ LL+ D + D
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDF 78
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
G PLHLAA RGH++++E L + D + I G T LHL LE ++ LL+
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI-GSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 155 DSELLNAKDDYGMTILHLAV 174
D +NA+D +G T +++
Sbjct: 138 D---VNAQDKFGKTAFDISI 154
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
+A +G+T LHL + LE ++ LL+N D +NA D G T LHLA +E ++
Sbjct: 41 NAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD---VNALDFSGSTPLHLAAKRGHLEIVE 97
Query: 184 LLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
+L A +VNA G T + A DT +I E+L + GA ++AQD
Sbjct: 98 VLLKYGA-DVNADDTIGSTPLHLAA----DTGHLEIVEVLLKYGADVNAQD 143
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAV 196
+ Q + ++ L+ N D +NA+D YG T LHLA +E +++L + A +VNA+
Sbjct: 21 AARAGQDDEVRILMANGAD---VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA-DVNAL 76
Query: 197 TANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
+G T + A+ +I E+L + GA ++A D
Sbjct: 77 DFSGSTPLHLAAKRGH----LEIVEVLLKYGADVNADD 110
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
A++ G VK L++ D + +D DGR PLH AA GH +V++ L D +A+
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDS 68
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
G T LH ++ E +K L+ D +NAKD G T LH A + E +KLL +
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
A +VN ++G T D+ R+ + ++ +LL + G
Sbjct: 126 GA-DVNTSDSDGRTPLDLA----REHGNEEVVKLLEKQGG 160
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 8/152 (5%)
Query: 35 AALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD 93
AA G++D K+++ + A + D R + LH A++ G+ +VK L+ D + D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR--TPLHHAAENGHKEVVKLLISKGAD-VNAKD 67
Query: 94 VDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENM 153
DGR PLH AA GH +V++ L D +A+ G T LH ++ E +K L+
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 154 GDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
D +N D G T L LA E +KLL
Sbjct: 127 AD---VNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
TPLH AA GH++ K ++ + + A++ D R + LH A++ G+ +VK L+ D
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGR--TPLHHAAENGHKEVVKLLISKGAD- 95
Query: 89 CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKF 148
+ D DGR PLH AA GH +V++ L D ++ G T L L +H E +K
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD-SDGRTPLDLAREHGNEEVVKL 154
Query: 149 LLENMG 154
L + G
Sbjct: 155 LEKQGG 160
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 96 GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
G PLHLAA GH++++E L + D +A G T LHL LE ++ LL+N D
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTK 215
+NA D G T LHLA +E +++L A +VNA G TA+DI D
Sbjct: 106 ---VNANDHNGFTPLHLAANIGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI----SIDNG 157
Query: 216 DWDIGELLRR 225
+ D+ E+L++
Sbjct: 158 NEDLAEILQK 167
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + + DS + LH+A+ +G++ +V+ LL+ D
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
+ D +G PLHLAA GH++++E L + D +A+ +G+T + +
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASA 125
LH+A+ G++ IV+ LL+ D +D + G PLHLAA RGH++V+E L + D +A
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSL-GVTPLHLAADRGHLEVVEVLLKNGAD-VNA 108
Query: 126 RLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
G T LHL LE ++ LL++ D +NA+D +G T +++
Sbjct: 109 NDHNGFTPLHLAANIGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
+ L TPLH+AA GH + + +L+ + D + LH+A+ G++ IV+ LL+
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVNAN-DHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
D + D G+ ++ G+ D+ E L +
Sbjct: 136 GAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
Q + ++ L+ N D +NA D G T LHLA +E +++L + A +VNA + G
Sbjct: 26 QDDEVRILMANGAD---VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA-DVNADDSLGV 81
Query: 202 TAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD------LQLPAN 239
T + A D ++ E+L + GA ++A D L L AN
Sbjct: 82 TPLHLAA----DRGHLEVVEVLLKNGADVNANDHNGFTPLHLAAN 122
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
TD +G PLHLAA G ++++E L + D +A G T LHL LE ++ LL+
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI-LAQS 210
+ D +NA D G T LHLA Q+E +++L A +VNA A G TA+DI + Q
Sbjct: 94 HGAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA-DVNAQDALGLTAFDISINQG 149
Query: 211 KRD 213
+ D
Sbjct: 150 QED 152
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA G + + +L+ + DS + LH+A+ G++ IV+ LL+ D
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGAD-V 98
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQ 142
+ D G PLHLAA+ G ++++E L + D +A+ G T + + Q
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD-VNAQDALGLTAFDISINQGQ 150
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
Q + ++ L+ N D +NA DD G+T LHLA A+ Q+E +++L + A +VNA + G
Sbjct: 18 QDDEVRILMANGAD---VNATDDNGLTPLHLAAANGQLEIVEVLLKNGA-DVNASDSAGI 73
Query: 202 TAWDILAQSKRDTKDWDIGELLRRAGA 228
T + A +I E+L + GA
Sbjct: 74 TPLHLAAYDGH----LEIVEVLLKHGA 96
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
D G PLHLAA+ GH++++E L + D +A ++G T LHL LE ++ LL+
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD-VYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDI 206
D +NA D G T LHLA + +E +++L A +VNA G TA+DI
Sbjct: 103 GAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI 152
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
+D+ + LH+A+ G++ IV+ LL+ D DV G PLHLAAM GH++++E L +
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 118 AKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
D +A + G T LHL LE ++ LL+ D +NA+D +G T +++
Sbjct: 102 YGAD-VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 17 LIVERPTVNCLSET---PLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG 73
LI VN + T PLH+AA+ GH + + +L+ + + D + LH+A+ G
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTG 91
Query: 74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETI 133
++ IV+ LL+ D + D+ G PLHLAA GH++++E L + D +A+ +G+T
Sbjct: 92 HLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD-VNAQDKFGKTA 149
Query: 134 LHLCV 138
+ +
Sbjct: 150 FDISI 154
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200
Q + ++ L+ N D +NA D+ G+T LHLA +E +++L A +V+A G
Sbjct: 25 GQDDEVRILIANGAD---VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA-DVDAADVYG 80
Query: 201 FTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQDL 234
FT + A T +I E+L + GA ++A D+
Sbjct: 81 FTPLHLAAM----TGHLEIVEVLLKYGADVNAFDM 111
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
D + S+ LH+A+ G+ IV+ LL+ D + D DG PLHLAA GH++++E L +
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
D +A+ +G T LHL LE ++ LL++ D +NA+D +G T +++
Sbjct: 103 GAD-VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA +GH + + +L+ + D+ + LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGHLEIVEVLLKYGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
+ D G PLHLAA RGH++++E L + D +A+ +G+T + + N E L +
Sbjct: 107 NAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISID-NGNEDLAEI 164
Query: 150 LENM 153
L+ +
Sbjct: 165 LQKL 168
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 96 GRNPLHLAAMRGHIDVLEELARAKPDA-ASARLIWGETILHLCVKHNQLEALKFLLENMG 154
G PLHL GH++++E L + D AS + W T LHL LE ++ LL+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW--TPLHLAAYRGHLEIVEVLLKYGA 104
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDT 214
D +NA D G T LHLA D +E +++L A +VNA G TA+DI D
Sbjct: 105 D---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDI----SIDN 156
Query: 215 KDWDIGELLRR 225
+ D+ E+L++
Sbjct: 157 GNEDLAEILQK 167
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASA 125
LH+ G++ I++ LL+ D + +D G PLHLAA RGH++++E L + D +A
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-VNA 108
Query: 126 RLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
G T LHL + LE ++ LL+ D +NA+D +G T +++
Sbjct: 109 MDYQGYTPLHLAAEDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+ GH + + +L+ + D + LH+A+ +G++ IV+ LL+ D
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
+ D G PLHLAA GH++++E L + D +A+ +G+T + +
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISI 154
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + +D + + LH+A++ G++ IV+ LL+ D
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-V 139
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELAR 117
+ D G+ ++ G+ D+ E L +
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
Q + ++ L+ N D +NA D +G+T LHL V + +E I++L A +VNA +G+
Sbjct: 26 QDDEVRILMANGAD---VNANDWFGITPLHLVVNNGHLEIIEVLLKYAA-DVNASDKSGW 81
Query: 202 TAWDILAQSKRDTKDWDIGELLRRAGA-ISAQDLQ 235
T + A +I E+L + GA ++A D Q
Sbjct: 82 TPLHLAAYRGH----LEIVEVLLKYGADVNAMDYQ 112
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
D+ ++ LH+A+ G++ IV+ LL+ D +DV G PLHLAA GH++++E L +
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
D +A G T LHL K LE ++ LL++ D +NA+D +G T +++
Sbjct: 103 GAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + + D + LH+A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
+ D DG PLHLAA G+++++E L + D +A+ +G+T + + N E L +
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNAQDKFGKTAFDISID-NGNEDLAEI 164
Query: 150 LENM 153
L+ +
Sbjct: 165 LQKL 168
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
D G PLHLAA GH++++E L + D +A G T L L LE ++ LL+N
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
D +NA D G T LHLA +E +++L + A +VNA G TA+DI
Sbjct: 103 GAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDI----SI 154
Query: 213 DTKDWDIGELLRR 225
D + D+ E+L++
Sbjct: 155 DNGNEDLAEILQK 167
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPLH+AA GH + + +L+ + +D + L +A+ G++ IV+ LL+ D
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-V 106
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
+ D++G PLHLAAM GH++++E L + D +A+ +G+T + +
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISI 154
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
+ ++ L+ N D +NA+D G T LHLA + +E +++L + A +VNAV G T
Sbjct: 28 DEVRILMANGAD---VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVNAVDHAGMTP 83
Query: 204 WDILAQSKRDTKDWDIGELLRRAGA-ISAQDLQ 235
+ A +I E+L + GA ++A D++
Sbjct: 84 LRLAALFGH----LEIVEVLLKNGADVNANDME 112
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 96 GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
G PLHLAA RGH++++E L + D +AR IWG T LHL LE ++ LLE D
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 156 SELLNAKDDYGMTILHLAV 174
+NA+D +G T +++
Sbjct: 106 ---VNAQDKFGKTAFDISI 121
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
+D + LH+A+++G++ IV+ LL+ D + D+ GR PLHLAA GH++++E L
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 118 AKPDAASARLIWGETILHLCVKHNQLEALKFLLENM 153
D +A+ +G+T + + N E L +L+ +
Sbjct: 102 YGAD-VNAQDKFGKTAFDISID-NGNEDLAEILQKL 135
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 17 LIVERPTVNCLSE---TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG 73
L+ VN + + TPLH+AA GH + + +L+ + D + LH+A+ G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVG 91
Query: 74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
++ IV+ LL+ D + D G+ ++ G+ D+ E L +
Sbjct: 92 HLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNA 195
+ Q + ++ L+ N D +NA DD G+T LHLA +E +++L A +VNA
Sbjct: 21 ATRAGQDDEVRILMANGAD---VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVNA 75
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
TPLH+AA +GH + + +LR + +D+ ++ LH+A+ G++ IV+ LL+ D
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
+ D G PL+LAA GH++++E L + D +A+ +G+T + +
Sbjct: 94 -VNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 142
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 35 AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G +D + IL A D + LH+A+ G++ IV+ LL+ D + D
Sbjct: 9 AARAGQDDEVR-ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDT 66
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
+G PLHLAA GH++++E L + D +A+ G T L+L LE ++ LL++
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 155 DSELLNAKDDYGMTILHLAV 174
D +NA+D +G T +++
Sbjct: 126 D---VNAQDKFGKTAFDISI 142
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 123 ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAI 182
A+A +G T LH+ LE ++ LL N D +NA D G T LHLA + +E +
Sbjct: 28 ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD---VNAVDTNGTTPLHLAASLGHLEIV 84
Query: 183 KLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
++L A +VNA A G T + A +I E+L + GA ++AQD
Sbjct: 85 EVLLKYGA-DVNAKDATGITPLYLAAYWGH----LEIVEVLLKHGADVNAQD 131
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200
Q + ++ L+ N D+ NA D YG T LH+A A +E +++L + A +VNAV NG
Sbjct: 13 GQDDEVRILMANGADA---NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA-DVNAVDTNG 68
Query: 201 FTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
T + A +I E+L + GA ++A+D
Sbjct: 69 TTPLHLAASLGH----LEIVEVLLKYGADVNAKD 98
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 96 GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
G PLHLAA RGH++++E L + D +A IWG T LHL LE ++ LLE D
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 156 SELLNAKDDYGMTILHLAV 174
+NA+D +G T +++
Sbjct: 106 ---VNAQDKFGKTAFDISI 121
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
+D + LH+A+++G++ IV+ LL+ D + +D+ GR PLHLAA GH++++E L
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 118 AKPDAASARLIWGETILHLCVKHNQLEALKFLLENM 153
D +A+ +G+T + + N E L +L+ +
Sbjct: 102 YGAD-VNAQDKFGKTAFDISID-NGNEDLAEILQKL 135
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 17 LIVERPTVNCLSE---TPLHVAALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQK 72
L+ VN + + TPLH+AA GH + + +L+ + A ++ R + LH+A+
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR--TPLHLAATV 90
Query: 73 GYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
G++ IV+ LL+ D + D G+ ++ G+ D+ E L +
Sbjct: 91 GHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNA 195
+ Q + ++ L+ N D +NA DD G+T LHLA +E +++L A +VNA
Sbjct: 21 ATRAGQDDEVRILMANGAD---VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVNA 75
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 62 KSSALHIASQKGYVGIVKALLQVIP--DKCSDTDVDGRNPLHLAAMRGHIDVLEELARAK 119
K S LH A++ G+V I L+Q D CS+ D R PL AA H++ ++ L +A
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE---DQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 120 P--DAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADK 177
D A G T LHL K E +++LL N G + +N +DD G T + A K
Sbjct: 68 ALVDPKDAE---GSTCLHLAAKKGHYEVVQYLLSN-GQMD-VNCQDDGGWTPMIWATEYK 122
Query: 178 QIEAIKLLTT 187
++ +KLL +
Sbjct: 123 HVDLVKLLLS 132
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 97 RNPLHLAAMRGHIDVLEEL--ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
R+PLH AA GH+D+ L A A D S T L ++N LEA+K+L++
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSED---QRTPLMEAAENNHLEAVKYLIKA-- 66
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
L++ KD G T LHLA E ++ L ++ ++VN G+T
Sbjct: 67 -GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ----VI 85
+PLH AA GH D +++ I + + + L A++ ++ VK L++ V
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 86 PDKCSDTDVDGRNPLHLAAMRGHIDVLEEL-------ARAKPDAASARLIWGETILHLCV 138
P D +G LHLAA +GH +V++ L + D +IW H
Sbjct: 72 P-----KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH--- 123
Query: 139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTA 198
++ +K LL D +N +D+ LH A ++ ++L + +++AV
Sbjct: 124 ----VDLVKLLLSKGSD---INIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNI 175
Query: 199 NGFTAWDILAQSKR 212
+G + I A+ R
Sbjct: 176 HGDSPLHIAARENR 189
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 24 VNCLSE---TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA 80
VNC + TP+ A H D K +L + I D+ ++ LH A+ G V I +
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEI 162
Query: 81 LLQVIPDKCS--DTDVDGRNPLHLAAMRGHIDVL 112
LL KC ++ G +PLH+AA D +
Sbjct: 163 LLAA---KCDLHAVNIHGDSPLHIAARENRYDCV 193
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 96 GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
G PLHLAA RGH++++E L + D +A WG T LHL LE ++ LLE D
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 156 SELLNAKDDYGMTILHLAV 174
+NA+D +G T +++
Sbjct: 106 ---VNAQDKFGKTAFDISI 121
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
+D + LH+A+++G++ IV+ LL+ D + +D GR PLHLAA GH++++E L
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 118 AKPDAASARLIWGETILHLCVKHNQLEALKFLLENM 153
D +A+ +G+T + + N E L +L+ +
Sbjct: 102 YGAD-VNAQDKFGKTAFDISID-NGNEDLAEILQKL 135
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 17 LIVERPTVNCLSE---TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG 73
L+ VN + + TPLH+AA GH + + +L+ + DS + LH+A+ G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVG 91
Query: 74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
++ IV+ LL+ D + D G+ ++ G+ D+ E L +
Sbjct: 92 HLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAV 196
+ Q + ++ L+ N D +NA DD G+T LHLA +E +++L A +VNA
Sbjct: 21 ATRAGQDDEVRILMANGAD---VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVNAS 76
Query: 197 TANGFTAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
+ G T + A +I E+L GA ++AQD
Sbjct: 77 DSWGRTPLHLAATVGH----LEIVEVLLEYGADVNAQD 110
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
DG PLH AA GH + +++L D +AR G T LHL K+ E +K LL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVT 197
D +NA+ G T HLA + E +KLL A +VNA +
Sbjct: 67 D---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-DVNARS 105
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRI-AEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
TPLH AA GH + K++L + + A D ++ LH+A++ G+ IVK LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 87 DKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGET 132
D + DG P HLA GH +++ +L AK +AR WG +
Sbjct: 67 D-VNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVNAR-SWGSS 109
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 66 LHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASA 125
LH A++ G+ VK LL D + DG PLHLAA GH +++ +L AK +A
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIV-KLLLAKGADVNA 70
Query: 126 RLIWGETILHLCVKHNQLEALKFL 149
R G T HL K+ E +K L
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV- 84
C+S + A G D KE + +A D +ALH A G+ IV+ LLQ+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
+P +D D G +PLH+AA G ++++ L K +A G T LH N+ E
Sbjct: 64 VP--VNDKDDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
LLE + + AKD Y T +H A A ++ + +L
Sbjct: 121 IAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHIL 158
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 104 AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD 163
A G +D L+E A A+ T LH E ++FLL+ +G +N KD
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVP--VNDKD 70
Query: 164 DYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
D G + LH+A + + E +K L A VNAV NG T A R
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNR 118
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ--VIPD 87
+PLH+AA G ++ K +L + + ++ + LH A+ K I LL+ PD
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALK 147
D +H AA +G++ ++ L K + + + G T LHL ++E K
Sbjct: 134 AKDHYDA---TAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLACDEERVEEAK 189
Query: 148 FLL 150
FL+
Sbjct: 190 FLV 192
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV- 84
C+S + A G D KE + +A D +ALH A G+ IV+ LLQ+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 85 IPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
+P +D D G +PLH+AA G ++++ L K +A G T LH N+ E
Sbjct: 64 VP--VNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
LLE + + AKD Y T +H A A ++ + +L
Sbjct: 121 IAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHIL 158
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 104 AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD 163
A G +D L+E A A+ T LH E ++FLL+ +G +N KD
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVP--VNDKD 70
Query: 164 DYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELL 223
D G + LH+A + E +K L A VNAV NG T A R +I +L
Sbjct: 71 DAGWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNR----HEIAVML 125
Query: 224 RRAGA 228
GA
Sbjct: 126 LEGGA 130
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ--VIPD 87
+PLH+AA G ++ K +L + + ++ + LH A+ K I LL+ PD
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALK 147
D +H AA +G++ ++ L K + + + G T LHL ++E K
Sbjct: 134 AKDHYDA---TAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLACDEERVEEAK 189
Query: 148 FLL 150
FL+
Sbjct: 190 FLV 192
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 41 EDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNP 99
E+ + IL K +A D +ALH A G+ IV+ LLQ+ +P +D D G +P
Sbjct: 20 EELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSP 76
Query: 100 LHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELL 159
LH+AA G ++++ L K +A G T LH N+ E LLE + +
Sbjct: 77 LHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-- 133
Query: 160 NAKDDYGMTILHLAVADKQIEAIKLL 185
AKD Y T +H A A ++ I +L
Sbjct: 134 -AKDHYEATAMHRAAAKGNLKMIHIL 158
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
S T LH A GH + E L Q + D S LHIA+ G IVKALL
Sbjct: 40 SRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK-GA 97
Query: 88 KCSDTDVDGRNPLHLAAM--RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEA 145
+ + + +G PLH AA R I V+ A PDA + T +H L+
Sbjct: 98 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH---YEATAMHRAAAKGNLKM 154
Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
+ LL + N +D G T LHLA ++++E KLL + A
Sbjct: 155 IHILLYYKAST---NIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 41 EDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNP 99
E+ + IL K +A D +ALH A G+ IV+ LLQ+ +P +D D G +P
Sbjct: 21 EELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSP 77
Query: 100 LHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELL 159
LH+AA G ++++ L K +A G T LH N+ E LLE + +
Sbjct: 78 LHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-- 134
Query: 160 NAKDDYGMTILHLAVADKQIEAIKLL 185
AKD Y T +H A A ++ I +L
Sbjct: 135 -AKDHYEATAMHRAAAKGNLKMIHIL 159
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
S T LH A GH + E L Q + D S LHIA+ G IVKALL
Sbjct: 41 SRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK-GA 98
Query: 88 KCSDTDVDGRNPLHLAAM--RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEA 145
+ + + +G PLH AA R I V+ A PDA + T +H L+
Sbjct: 99 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH---YEATAMHRAAAKGNLKM 155
Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
+ LL + N +D G T LHLA ++++E KLL + A
Sbjct: 156 IHILLYYKAST---NIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
N L +TPLH+A + + A+ +L E D R ++ LH+A ++G + V L Q
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQ- 96
Query: 85 IPDKCSD---------TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILH 135
C+ T+ +G LHLA++ G++ ++E L D + G T LH
Sbjct: 97 ---SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 153
Query: 136 LCVKHNQLEALKFLLENMGD 155
L V + + LL+ D
Sbjct: 154 LAVDLQNPDLVSLLLKCGAD 173
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 97 RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDS 156
+ PLHLA + ++ E L A D R G T LHL + L ++ L ++
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 157 EL---LNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVT-ANGFTAWDILAQSKR 212
L L A + G T LHLA + ++LL S +VNA NG TA +
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELL-VSLGADVNAQEPCNGRTALHLAV---- 156
Query: 213 DTKDWDIGELLRRAGA 228
D ++ D+ LL + GA
Sbjct: 157 DLQNPDLVSLLLKCGA 172
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA- 122
+ LH+AS GY+GIV+ L+ + D + +GR LHLA + D++ L + D
Sbjct: 116 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
Query: 123 -------ASARLIWG 130
+ +L WG
Sbjct: 176 RVTYQGYSPYQLTWG 190
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 130 GETILHLCVKHNQLE-ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIE 180
G++ LHL + H + ++ + + GD LN +++ T LHLAV Q E
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPE 56
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEEL----------DSRKSSALHIASQKGY 74
N L +TPLH+A ++ +P IAE L D R ++ LH+A ++G
Sbjct: 42 NNLQQTPLHLA-----------VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC 90
Query: 75 VGIVKALLQVIPDKCSD---------TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASA 125
+ V L Q C+ T+ +G LHLA++ G++ ++E L D +
Sbjct: 91 LASVGVLTQ----SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 126 RLIWGETILHLCVKHNQLEALKFLLENMGD 155
G T LHL V + + LL+ D
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 97 RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDS 156
+ PLHLA + ++ E L A D R G T LHL + L ++ L ++
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 157 EL---LNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVT-ANGFTAWDILAQSKR 212
L L A + G T LHLA + ++LL S +VNA NG TA +
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELL-VSLGADVNAQEPCNGRTALHLAV---- 159
Query: 213 DTKDWDIGELLRRAGA 228
D ++ D+ LL + GA
Sbjct: 160 DLQNPDLVSLLLKCGA 175
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA- 122
+ LH+AS GY+GIV+ L+ + D + +GR LHLA + D++ L + D
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Query: 123 -------ASARLIWG 130
+ +L WG
Sbjct: 179 RVTYQGYSPYQLTWG 193
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
TD G +PLHLAA GH E L RA + AR T LH+ ++ LL+
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSK 211
+ D +NAKD MT LH A E ++LL A +V+ + TA+DI
Sbjct: 89 HGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDI----S 140
Query: 212 RDTKDWDIGELLR 224
D + D+ E+L+
Sbjct: 141 IDNGNEDLAEILQ 153
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 23 TVNCLSETPLHVAALLGHEDFAKEILRQK-PRIAEELDSRKSSALHIASQKGYVGIVKAL 81
T + L +PLH+AA GH + +LR R A R + LH+A+ +G+ IV+ L
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVL 86
Query: 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
L+ D + D+ LH A H +V+E L + D
Sbjct: 87 LKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 19 VERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIV 78
V R + TPLH+AA GH + + +L+ + + D K +ALH A++ + +V
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVV 116
Query: 79 KALLQVIPD 87
+ L++ D
Sbjct: 117 ELLIKYGAD 125
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 8/180 (4%)
Query: 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
+S PLH A + +E+L KP + + D LH + I LL +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 87 DKCSD--TDVDGRNPLHLAAMRGHIDVLEELARA--KPDAASARLIWGETILHLCVKHNQ 142
+ D D G P H+A G+++V++ L KPD G T LHL V
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKW 119
Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
E +FL+EN + KD + LH A + ++ I+LL VN G+T
Sbjct: 120 FEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 99 PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL 158
PLH A M ++EL +KP + G LH V E FLL M + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 159 LNAKDDYGMTILHLAVADKQIEAIK-LLTTSTAIEVNAVTANGFTA 203
+ DD G T H+A + +E +K L ++N +T G T
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 8/180 (4%)
Query: 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
+S PLH A + +E+L KP + + D LH + I LL +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 87 DKCSD--TDVDGRNPLHLAAMRGHIDVLEELARA--KPDAASARLIWGETILHLCVKHNQ 142
+ D D G P H+A G+++V++ L KPD G T LHL V
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKW 119
Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
E +FL+EN + KD + LH A + ++ I+LL VN G+T
Sbjct: 120 FEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 99 PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL 158
PLH A M ++EL +KP + G LH V E FLL M + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 159 LNAKDDYGMTILHLAVADKQIEAIK-LLTTSTAIEVNAVTANGFTA 203
+ DD G T H+A + +E +K L ++N +T G T
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 8/180 (4%)
Query: 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIP 86
+S PLH A + +E+L KP + + D LH + I LL +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 87 DKCSD--TDVDGRNPLHLAAMRGHIDVLEELARA--KPDAASARLIWGETILHLCVKHNQ 142
+ D D G P H+A G+++V++ L KPD G T LHL V
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT-NQGVTCLHLAVGKKW 119
Query: 143 LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFT 202
E +FL+EN + KD + LH A + ++ I+LL VN G+T
Sbjct: 120 FEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 99 PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL 158
PLH A M ++EL +KP + G LH V E FLL M + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 159 LNAKDDYGMTILHLAVADKQIEAIK-LLTTSTAIEVNAVTANGFTA 203
+ DD G T H+A + +E +K L ++N +T G T
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
D DG PLHLAA GH++++E L + D +A +G T LHL LE ++ LL++
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD-VNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 153 MGDSELLNAKDDYGMTILHLAV 174
D +NA+D +G T +++
Sbjct: 103 GAD---VNAQDKFGKTAFDISI 121
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 17 LIVERPTVNCLSE---TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG 73
L+ VN L E TPLH+AA LGH + + +L+ + E D+ + LH+A+ +G
Sbjct: 33 LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRG 91
Query: 74 YVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
++ IV+ LL+ D + D G+ ++ G+ D+ E L +
Sbjct: 92 HLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
D RKS+ LH+A+ V IV+ LLQ D D G PLH A GH +V E L +
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161
+A +W T LH N++E LL + D L+N
Sbjct: 114 GA-CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
A++ G + ALL + C +D PLHLAA + +++ L + D A+
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDK 89
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
G LH + E + LL++ +NA D + T LH A + ++E LL +
Sbjct: 90 GGLVPLHNACSYGHYEVTELLLKH---GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 189 TAIEVNAVTANGFTAWDI 206
A + V +G +A D+
Sbjct: 147 GA-DPTLVNCHGKSAVDM 163
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
TPLHVAA H D E+L + LDS +ALH A+ G++ + LL D
Sbjct: 249 TPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELAR--AKPDAASARLIWGETILHLCVKHNQLEALK 147
++ + D PLH+AA R H DV+E L + AK +A + G+T LH L+ +
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS---LGQTALHRAALAGHLQTCR 297
Query: 148 FLLENMGDSELLN 160
LL D +++
Sbjct: 298 LLLSYGSDPSIIS 310
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 96 GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155
G PLHLAAM GH++++E L + D +A G T LHL + LE ++ LL++ D
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 156 SELLNAKDDYGMTILHLAV 174
+NA+D +G T +++
Sbjct: 106 ---VNAQDKFGKTAFDISI 121
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 124 SARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183
+A WG T LHL LE ++ LL+N D +NA + G T LHLA +E ++
Sbjct: 41 NANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD---VNATGNTGRTPLHLAAWADHLEIVE 97
Query: 184 LLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR 225
+L A +VNA G TA+DI D + D+ E+L++
Sbjct: 98 VLLKHGA-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
TPLH+AA+LGH + + +L+ + ++ ++ LH+A+ ++ IV+ LL+ D
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTP-LHLAAWADHLEIVEVLLKHGAD 105
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELAR 117
+ D G+ ++ G+ D+ E L +
Sbjct: 106 -VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 9/93 (9%)
Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
Q + ++ L+ N D +NAKD+YG+T L+LA A +E +++L + A +VNAV A GF
Sbjct: 26 QDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVNAVDAIGF 81
Query: 202 TAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
T + A +I E+L + GA ++AQD
Sbjct: 82 TPLHLAAFIGH----LEIAEVLLKHGADVNAQD 110
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
D + L++A+ G++ IV+ LL+ D + D G PLHLAA GH+++ E L +
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 119 KPDAASARLIWGETILHLCV 138
D +A+ +G+T + +
Sbjct: 103 GAD-VNAQDKFGKTAFDISI 121
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG 73
V+ + TPLH+AA +GH + A+ +L+ + + D +A I+ G
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNG 124
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 20/157 (12%)
Query: 63 SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRN-----PLHLAAMRGHIDVLEEL-- 115
SS LH+A+ G ++ LL+ + RN PLHLA +GH V++ L
Sbjct: 87 SSPLHVAALHGRADLIPLLLK------HGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 116 ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA 175
+ AKP+ + G T L E + LL++ G S +NA ++ G T LH AV
Sbjct: 141 SNAKPNKKD---LSGNTPLIYACSGGHHELVALLLQH-GAS--INASNNKGNTALHEAVI 194
Query: 176 DKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212
+K + ++LL A V + TA D Q+ +
Sbjct: 195 EKHVFVVELLLLHGA-SVQVLNKRQRTAVDCAEQNSK 230
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE 151
T DG +PLH+AA+ G D++ L + +A AR LHL + + +K LL+
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 152 NMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
+ N KD G T L A + E + LL A +NA G TA
Sbjct: 141 SNAKP---NKKDLSGNTPLIYACSGGHHELVALLLQHGA-SINASNNKGNTA 188
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
G T LHL ++ LE ++ LL++ D +NA D+ G T LHLA +E +++L
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGAD---VNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR 225
A +VNA G TA+DI D + D+ E+L++
Sbjct: 104 A-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
D + ++ LH+A+ ++ IV+ LL+ D + D DG PLHLAA+ GH++++E L +
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 119 KPDAASARLIWGETILHLCV 138
D +A+ +G+T + +
Sbjct: 103 GAD-VNAQDKFGKTAFDISI 121
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
TPLH+AA H + + +L+ + D+ S+ LH+A+ G++ IV+ LL+
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAH-DNDGSTPLHLAALFGHLEIVEVLLK 101
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
A++ G V VK L V C D + PLH AA + V+E L + D A+
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 75
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
G LH + E + L+++ ++N D + T LH A A + E KLL
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229
A + +G T D++ D DI +LLR A+
Sbjct: 133 GA-DPTKKNRDGNTPLDLVKDG-----DTDIQDLLRGDAAL 167
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 35 AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G + K++ + +++ R+S+ LH A+ V +V+ LLQ D D
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 75
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
G PLH A GH +V E L + A L W T LH + E K LL++
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 155 D 155
D
Sbjct: 135 D 135
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 80 ALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASAR------------- 126
+L Q + +D+ G+ LH+A R + ++ L D +A
Sbjct: 85 SLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPG 144
Query: 127 LIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILH--LAVADKQIEAIKL 184
+GE L L NQL +KFLL+N ++A+D G T+LH + VAD ++ K
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKF 204
Query: 185 LTT 187
+T+
Sbjct: 205 VTS 207
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
A++ G V VK L V C D + PLH AA + V+E L + D A+
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 73
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
G LH + E + L+++ ++N D + T LH A A + E KLL
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229
A + +G T D++ D DI +LLR A+
Sbjct: 131 GA-DPTKKNRDGNTPLDLVKDG-----DTDIQDLLRGDAAL 165
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 35 AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G + K++ + +++ R+S+ LH A+ V +V+ LLQ D D
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 73
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
G PLH A GH +V E L + A L W T LH + E K LL++
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 155 D 155
D
Sbjct: 133 D 133
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 69 ASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI 128
A++ G V VK L V C D + PLH AA + V+E L + D A+
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 77
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
G LH + E + L+++ ++N D + T LH A A + E KLL
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229
A + +G T D++ D DI +LLR A+
Sbjct: 135 GA-DPTKKNRDGNTPLDLVKDG-----DTDIQDLLRGDAAL 169
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 35 AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G + K++ + +++ R+S+ LH A+ V +V+ LLQ D D
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDK 77
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
G PLH A GH +V E L + A L W T LH + E K LL++
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGA 136
Query: 155 D 155
D
Sbjct: 137 D 137
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 23/173 (13%)
Query: 30 TPLHVAALLG-----------HEDFAKEI----LRQKPRIAEELDSRKSSALHIASQKGY 74
TPL +AA+ G +ED ++ L Q + +D ++LH+A++
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 75 VGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETIL 134
K LL D S D GR PLH A + V + L R + +AR+ G T L
Sbjct: 64 ADAAKRLLDAGADANS-QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPL 122
Query: 135 HLCVKHNQLEALKFLLENM--GDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
L + A++ ++E++ D+++ NA D+ G T LH A A EA+ +L
Sbjct: 123 ILAAR----LAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNIL 170
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 4/131 (3%)
Query: 55 AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEE 114
A D+ + LH A +G+ + LL+ + DG PL LAA ++E+
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 115 LARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
L A D +A G+T LH N EA+ LL + + + A+DD T L LA
Sbjct: 137 LITADADINAAD-NSGKTALHWAAAVNNTEAVNILLMHHANRD---AQDDKDETPLFLAA 192
Query: 175 ADKQIEAIKLL 185
+ EA K L
Sbjct: 193 REGSYEASKAL 203
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 22/124 (17%)
Query: 96 GRNPLHLAAMRGH-IDVLEELARAKPDAASARLI----------------WGETILHLCV 138
G PL +AA+RG +D E++ + ++A++I GET LHL
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNED--STAQVISDLLAQGAELNATMDKTGETSLHLAA 59
Query: 139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTA 198
+ + +A K LL+ D+ N++D+ G T LH AVA + ++L + A +NA
Sbjct: 60 RFARADAAKRLLDAGADA---NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMH 116
Query: 199 NGFT 202
+G T
Sbjct: 117 DGTT 120
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
G T LHL ++ LE ++ LL+N D +NA D G T LHL +E +++L
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGAD---VNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR 225
A +VNA G TA+DI D + D+ E+L++
Sbjct: 104 A-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 35 AALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDV 94
AA G +D + ++ + E D + LH+A+ ++ IV+ LL+ D + D
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGAD-VNAIDA 78
Query: 95 DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
G PLHL AM GH++++E L + D +A+ +G+T + +
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 121
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
Q + ++ L+ N D +NA+D G+T LHLA + +E +++L + A +VNA+ A G
Sbjct: 26 QDDEVRILMANGAD---VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA-DVNAIDAIGE 81
Query: 202 TAWDILAQSKRDTKDWDIGELLRRAGA-ISAQD 233
T ++A +I E+L + GA ++AQD
Sbjct: 82 TPLHLVAMYGH----LEIVEVLLKHGADVNAQD 110
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQ 83
TPLH+AA+ H + + +L+ + +D+ + LH+ + G++ IV+ LL+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADV-NAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG 73
++ + ETPLH+ A+ GH + + +L+ + + D +A I+ G
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNG 124
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%)
Query: 21 RPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA 80
R + + TPL VA +LG E+ +++ ++ E+ D S+AL A + +GI +
Sbjct: 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEK 86
Query: 81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKH 140
LL + D G+ PL + + G+ ++ L + + R + GET L + K+
Sbjct: 87 LLSK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKY 144
Query: 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT 186
+ E +K LLE D ++A+D G+T A + E IK+ T
Sbjct: 145 GRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQEVIKIFT 187
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
G+ +L + Q + ++ L+ N D +NAKD G T LHLA + +E +++L +
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA 226
A +VNA G TA+DI D + D+ E+L++A
Sbjct: 59 A-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQKA 90
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
D DG PLHLAA GH++++E L +A D +A+ +G+T + +
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISI 76
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
GET LHL ++++ +A K LLE D+ N +D+ G T LH AV+ ++L +
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 190 AIEVNAVTANGFT 202
A +++A +G T
Sbjct: 82 ATDLDARMHDGTT 94
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 46 EILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105
+ + Q + + D +ALH+A++ K LL+ D + D GR PLH A
Sbjct: 9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVS 67
Query: 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL-LNAKDD 164
V + L R + AR+ G T L L + A++ +LE++ +S +NA DD
Sbjct: 68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVNAVDD 123
Query: 165 YGMTILH 171
G + LH
Sbjct: 124 LGKSALH 130
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
ET LH+AA D AK +L + A D+ + LH A G+ + L I +
Sbjct: 25 GETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQIL---IRN 80
Query: 88 KCSDTDV---DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
+ +D D DG PL LAA +LE+L + D + + G++ LH N ++
Sbjct: 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVD 139
Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
A LL+N + ++ N +++ T L LA + E K+L
Sbjct: 140 AAVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVL 177
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
G ++H + L+ L+ LLEN D +N +D+ G LHLA + + ++ L T
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQ 235
A V G TA D+ R+ ++ L++ GA A +LQ
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRN----EVVSLMQANGAGGATNLQ 168
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 38 LGHEDFAKEILRQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R A +H A++ G++ ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
PLHLAA GH+ V+E L + R G+T L + + E + + N
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
GET LHL ++++ +A K LLE D+ N +D+ G T LH AV+ ++L +
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 190 AIEVNAVTANGFT 202
A +++A +G T
Sbjct: 115 ATDLDARMHDGTT 127
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 46 EILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105
+ + Q + + D +ALH+A++ K LL+ D + D GR PLH A
Sbjct: 42 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVS 100
Query: 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL-LNAKDD 164
V + L R + AR+ G T L L + A++ +LE++ +S +NA DD
Sbjct: 101 ADAQGVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVNAVDD 156
Query: 165 YGMTILH 171
G + LH
Sbjct: 157 LGKSALH 163
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
ET LH+AA D AK +L + A D+ + LH A G+ + L++ +
Sbjct: 58 GETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIR---N 113
Query: 88 KCSDTDV---DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
+ +D D DG PL LAA +LE+L + D + + G++ LH N ++
Sbjct: 114 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVD 172
Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
A LL+N + ++ N +++ T L LA + E K+L
Sbjct: 173 AAVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVL 210
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
G ++H + QL+ L+ LLE D +N +D+ G LHLA + + ++ L T
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQ 235
A V G TA D+ R+ ++ L++ GA A +LQ
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRN----EVVSLMQANGAGGATNLQ 168
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 38 LGHEDFAKEILRQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R A +H A++ G + ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
PLHLAA GH+ V+E L + R G+T L + + E + + N
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
GET LHL ++++ +A K LLE D+ N +D+ G T LH AV+ ++L +
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 190 AIEVNAVTANGFT 202
A +++A +G T
Sbjct: 114 ATDLDARMHDGTT 126
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 46 EILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105
+ + Q + + D +ALH+A++ K LL+ D + D GR PLH A
Sbjct: 41 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVS 99
Query: 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL-LNAKDD 164
V + L R + AR+ G T L L + A++ +LE++ +S +NA DD
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVNAVDD 155
Query: 165 YGMTILH 171
G + LH
Sbjct: 156 LGKSALH 162
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
ET LH+AA D AK +L + A D+ + LH A G+ + L I +
Sbjct: 57 GETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQIL---IRN 112
Query: 88 KCSDTDV---DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
+ +D D DG PL LAA +LE+L + D + + G++ LH N ++
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVD 171
Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
A LL+N + ++ N +++ T L LA + E K+L
Sbjct: 172 AAVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVL 209
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 38 LGHEDFAKEILRQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R +A +H A++ G++ ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
PLHLAA GH+ V+E L + R G+T L + + E + + N
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSA--LHIASQKGYVGIVKALLQVIPD 87
TPLH A + ED + +LR A+ + +K+ A +A+ G V ++K L D
Sbjct: 61 TPLHNAVQMSREDIVELLLRHG---ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELA--------RAKPDAASARL-IWGETILHLCV 138
++ D G AA+ G + L+ L R K RL G T L
Sbjct: 118 -VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176
Query: 139 KHNQLEALKFLLENMGDSELLNAKDDYGMT-ILH--LAVADKQIEAIKLLTTSTAIEVNA 195
+ +E LK LL+ MG +NA D+ G ++H L+ D +EAI L +VN
Sbjct: 177 EKGHVEVLKILLDEMGAD--VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 234
Query: 196 VTANGFTAWDILAQSKR 212
G T ILA K+
Sbjct: 235 RGERGKTPL-ILAVEKK 250
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 40/183 (21%)
Query: 48 LRQKPRIAEE-LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPL-HLAAM 105
LR+K + +E L ++AL A++KG+V ++K LL + + D GRN L H
Sbjct: 153 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 212
Query: 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDY 165
DV E I HL LL++ D +N + +
Sbjct: 213 SDDSDV-------------------EAITHL------------LLDHGAD---VNVRGER 238
Query: 166 GMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR 225
G T L LAV K + ++ L IE+N ++G TA +LA + K I ELL +
Sbjct: 239 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKK---IAELLCK 294
Query: 226 AGA 228
GA
Sbjct: 295 RGA 297
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 106 RGHIDVLEELARAK--------PDAASARLIWGETILHLCVK-HNQ--LEALKFLLENMG 154
R + VLE A + PDA + E +LHL VK NQ L + F+++N G
Sbjct: 162 RDLLSVLEAFANGQDFGQPLPGPDAQAPE----ELVLHLAVKVANQASLPLVDFIIQNGG 217
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDT 214
L+AK G T LH A Q + +KLL A+ V V G TA DI K+
Sbjct: 218 H---LDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDI--ARKKHH 271
Query: 215 KDWDIGELLRRAGA 228
K+ + ELL +A A
Sbjct: 272 KECE--ELLEQAQA 283
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSA--LHIASQKGYVGIVKALLQVIPD 87
TPLH A + ED + +LR A+ + +K+ A +A+ G V ++K L D
Sbjct: 41 TPLHNAVQMSREDIVELLLRHG---ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELA--------RAKPDAASARL-IWGETILHLCV 138
++ D G AA+ G + L+ L R K RL G T L
Sbjct: 98 -VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 139 KHNQLEALKFLLENMGDSELLNAKDDYGMT-ILH--LAVADKQIEAIKLLTTSTAIEVNA 195
+ +E LK LL+ MG +NA D+ G ++H L+ D +EAI L +VN
Sbjct: 157 EKGHVEVLKILLDEMGAD--VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214
Query: 196 VTANGFTAWDILAQSKR 212
G T ILA K+
Sbjct: 215 RGERGKTPL-ILAVEKK 230
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 40/183 (21%)
Query: 48 LRQKPRIAEE-LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPL-HLAAM 105
LR+K + +E L ++AL A++KG+V ++K LL + + D GRN L H
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192
Query: 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDY 165
DV E I HL LL++ D +N + +
Sbjct: 193 SDDSDV-------------------EAITHL------------LLDHGAD---VNVRGER 218
Query: 166 GMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR 225
G T L LAV K + ++ L IE+N ++G TA +LA + K I ELL +
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKK---IAELLCK 274
Query: 226 AGA 228
GA
Sbjct: 275 RGA 277
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 27 LSETPLHVAALLGHEDFAKEILRQ--KPRIAEELDSRKSSALHIASQKGYVGIVKALLQV 84
L+ TPLH A GH ++++ P + +D S +H+A+Q G+ IV L+
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIA- 130
Query: 85 IPDKCSDTDV---DGRNPLHLAAMRGH 108
K D D+ +G PL AA R H
Sbjct: 131 ---KGQDVDMMDQNGMTPLMWAAYRTH 154
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 99 PLHLAAMRGHIDVLEELARAKPDAASARLIWGE--TILHLCVKHNQLEALKFLLENMGDS 156
PLH A +GH+ ++ +L + D + LI GE + +HL + + +L+ D
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 157 ELLNAKDDYGMT-ILHLAVADKQIEAIKLLTT 187
+++ D GMT ++ A ++ +LL T
Sbjct: 136 DMM---DQNGMTPLMWAAYRTHSVDPTRLLLT 164
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 46 EILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105
+ + Q + + D +ALH+A++ K LL+ D ++ GR PLH A
Sbjct: 6 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNM-GRTPLHAAVS 64
Query: 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL-LNAKDD 164
V + L R + AR+ G T L L + AL+ +LE++ +S +NA DD
Sbjct: 65 ADAQGVFQILLRNRATDLDARMHDGTTPLILAAR----LALEGMLEDLINSHADVNAVDD 120
Query: 165 YGMTILH 171
G + LH
Sbjct: 121 LGKSALH 127
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
GET LHL ++++ +A K LLE D+ + +D+ G T LH AV+ ++L +
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXI---QDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 190 AIEVNAVTANGFT 202
A +++A +G T
Sbjct: 79 ATDLDARMHDGTT 91
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87
ET LH+AA D AK +L + A D+ + LH A G+ + LL+ +
Sbjct: 22 GETALHLAARYSRSDAAKRLL-EASADAXIQDNMGRTPLHAAVSADAQGVFQILLR---N 77
Query: 88 KCSDTDV---DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144
+ +D D DG PL LAA +LE+L + D + + G++ LH N ++
Sbjct: 78 RATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVD 136
Query: 145 ALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
A LL+N + ++ N K++ T L LA + E K+L
Sbjct: 137 AAVVLLKNGANKDMQNNKEE---TPLFLAAREGSYETAKVL 174
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 38 LGHEDFAKEILRQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R A +H A++ G++ ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
PLHLAA GH+ V+E L + R G+T L + + E + + N
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 38 LGHEDFAKEILRQKPRIAEELDSRKSSA-LHIASQKGYVGIVKALLQVIPDKCSDTDVDG 96
LG+ + A+ +L + +L R A +H A++ G++ ++ LL+ D + D +G
Sbjct: 47 LGNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEG 103
Query: 97 RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
PLHLAA GH+ V+E L + R G+T L + + E + + N
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 129 WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188
G+ +L + Q + ++ L+ N D + AKD G T LHLA + +E +KLL +
Sbjct: 6 LGKKLLE-AARAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Query: 189 TAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLR 224
A +VNA G TA+DI D + D+ E+L+
Sbjct: 62 GA-DVNAQDKFGKTAFDI----SIDNGNEDLAEILQ 92
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
D +G PLHLAA GH++V++ L A D +A+ +G+T + +
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISI 80
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 106 RGHIDVLEELARAK--------PDAASARLIWGETILHLCVK-HNQ--LEALKFLLENMG 154
R + VLE A + PDA + E +LHL VK NQ L + F+++N G
Sbjct: 143 RDLLSVLEAFANGQDFGQPLPGPDAQAPE----ELVLHLAVKVANQASLPLVDFIIQNGG 198
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDT 214
L+AK G T LH A Q + +KLL A+ V V G TA DI K+
Sbjct: 199 H---LDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDI--ARKKHH 252
Query: 215 KDWDIGELLRRAGA 228
K+ + ELL +A A
Sbjct: 253 KECE--ELLEQAQA 264
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD---GRNPLHLAAMRGHIDVLEEL 115
+ R + LHIAS KG + V+ LLQ SD +V G PLH A GH+ V+E L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 116 ARAKPDAASARLIWGETILHLCVKHNQLEALKFLL 150
+ K + ++ LH K+ ++ +K LL
Sbjct: 63 LQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81
P N ET LH+A++ G + + E L Q D + LH A G++ +V+ L
Sbjct: 4 PFTNHRGETLLHIASIKG-DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
LQ + T +PLH AA GH+D+++ L
Sbjct: 63 LQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
GET+LH+ + ++++LL+N D N KD G T LH A ++ ++LL
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 190 AIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGA 228
A+ V G+ L + ++ DI +LL GA
Sbjct: 67 AL----VNTTGYQNDSPLHDAAKNGH-VDIVKLLLSYGA 100
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82
TPLH A GH E+L Q + + S LH A++ G+V IVK LL
Sbjct: 45 TPLHEACNHGHLKVV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM-----RGHIDVLE 113
DS ++ALH + +V+ LL K + G +P+ L A+ + I+ +
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 114 ELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173
+L R A A G+T L L V H +++ +K LL D +N +DD G T L A
Sbjct: 168 QLFRLGNINAKASQ-AGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCA 223
Query: 174 VADKQIEAIKLLTTSTAIEVNAVTANGFTA 203
E LL + +++ +G TA
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
G+T LHL V H L FLL E L+ ++D G T LHLA
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
+ DG PLH+A + +++ L A D G T LHL V+ L+ LL+
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 153 MGD 155
D
Sbjct: 215 GAD 217
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
G+T LHL V H L FLL E L+ ++D G T LHLA
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
+ DG PLH+A + +++ L A D G T LHL V+ L+ LL+
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 153 MGD 155
D
Sbjct: 215 GAD 217
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 46 EILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105
+ + Q + + D ++ALH+A+ K LL+ D + D GR PLH A
Sbjct: 41 DFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVS 99
Query: 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSEL-LNAKDD 164
V + L R + AR+ G T L L + A++ +LE++ +S +NA DD
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVNAVDD 155
Query: 165 YGMTILH 171
G + LH
Sbjct: 156 LGKSALH 162
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
T LH+AA D AK +L + A D+ + LH A G+ + L I ++
Sbjct: 59 TALHLAAAYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQIL---IRNRA 114
Query: 90 SDTDV---DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEAL 146
+D D DG PL LAA +LE+L + D + + G++ LH N ++A
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVDAA 173
Query: 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185
LL+N + ++ N +++ T L LA + E K+L
Sbjct: 174 VVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVL 209
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG---ETILHLCVKHNQLEALKFL 149
D DG PLH+A ++G++ + L I+ +T LHL V L ++ L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI-TTLPSVVRL 64
Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA---IEVNAVTANGFTAWDI 206
L G S + A D +G T HLA + ++ L S A +++ A +G TA +
Sbjct: 65 LVTAGASPM--ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 207 LAQSKRDTKDWDIGELLRRAGAISAQDLQ 235
++ + LL R I A D++
Sbjct: 123 AVNTE---CQETVQLLLERGADIDAVDIK 148
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 39/161 (24%)
Query: 29 ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDK 88
+TPLH+A + G+ ++ + ELD I L Q
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-----------------IYNNLRQT---- 48
Query: 89 CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIW---GETILHLCVKHNQLEA 145
PLHLA I L + R A ++ + G+T HL +H
Sbjct: 49 ----------PLHLAV----ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTC 94
Query: 146 LKFLLENMGDSEL-LNAKDDYGMTILHLAVADKQIEAIKLL 185
L+ LL++ L L A++ G+T LH+AV + E ++LL
Sbjct: 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 9/190 (4%)
Query: 4 SVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKS 63
+V+ L+ L QQ E N L +TPLH+A + + +L LD
Sbjct: 24 AVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLPSVVR-LLVTAGASPMALDRHGQ 80
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSD---TDVDGRNPLHLAAMRGHIDVLEELARAKP 120
+A H+A + ++ALL D + DG LH+A + ++ L
Sbjct: 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA 140
Query: 121 DAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIE 180
D + + G + L V++N L ++ LL++ + +NA+ G + LH A +
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLP 197
Query: 181 AIKLLTTSTA 190
++ L S A
Sbjct: 198 LVRTLVRSGA 207
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 63 SSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG 107
+ALH+A+ KGY ++K L+Q D + D DG PLH AA G
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWG 243
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
G T LH + ++ +KFL+EN + +N D+ G LH A + ++ + L +
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 190 AIEVNAVTANGFTAWDI 206
A V AV + G T DI
Sbjct: 130 A-HVGAVNSEGDTPLDI 145
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL AA G + E L Q + L + SAL +A KGY IVK LL D
Sbjct: 36 TPLMWAAAHG-QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-V 93
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
++ D +G PL A H+ ++ L + D
Sbjct: 94 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
G T L H Q+ ++FLL+N D +LL + + L LA + + +K+L
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE---SALSLACSKGYTDIVKML-LDC 89
Query: 190 AIEVNAVTANGFT 202
++VN NG T
Sbjct: 90 GVDVNEYDWNGGT 102
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL AA G + E L Q + L + SAL +A KGY IVK LL D
Sbjct: 38 TPLMWAAAHG-QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-V 95
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
++ D +G PL A H+ ++ L + D
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
G T L H Q+ ++FLL+N D +LL + + L LA + + +K+L
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE---SALSLACSKGYTDIVKML-LDC 91
Query: 190 AIEVNAVTANGFT 202
++VN NG T
Sbjct: 92 GVDVNEYDWNGGT 104
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAV 196
+ Q + ++ L+ N D + AKD G T LHLA + +E +KLL + A +V A
Sbjct: 31 AARAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA-DVXAQ 86
Query: 197 TANGFTAWDILAQSKRDTKDWDIGELLR 224
G TA+DI D + D+ E+L+
Sbjct: 87 DKFGKTAFDI----SIDNGNEDLAEILQ 110
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 93 DVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138
D +G PLHLAA GH++V++ L A D A+ +G+T + +
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISI 98
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174
G T LHL ++ LE +K LLE D + A+D +G T +++
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFDISI 98
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 45 KEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGR---NPLH 101
KEIL+ +E+D+ ++ L+IA + I KAL+ D+ +D ++ +P
Sbjct: 22 KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI----DRGADINLQNSISDSPYL 77
Query: 102 LAAMRGHIDVLEE-LARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLN 160
A +G ++L L A PD G ++ K ++ +K LLE+ E ++
Sbjct: 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK-GHIDNVKLLLED--GREDID 134
Query: 161 AKDDYGMTILHLAVA 175
++D+G T L AV
Sbjct: 135 FQNDFGYTALIEAVG 149
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC 137
VK +LQ + + D +G PL++A I++ + L D I L+
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80
Query: 138 VKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVT 197
+ + E L ++L++ + LN + YG L A I+ +KLL +++
Sbjct: 81 AQ-GRTEILAYMLKHA--TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 198 ANGFTA 203
G+TA
Sbjct: 138 DFGYTA 143
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL AA G + E L Q + L + SAL +A KGY IVK LL D
Sbjct: 54 TPLMWAAAHG-QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-V 111
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121
++ D +G PL A H+ ++ L + D
Sbjct: 112 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 130 GETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189
G T L H Q+ ++FLL+N D +LL + + L LA + + +K+L
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE---SALSLACSKGYTDIVKML-LDC 107
Query: 190 AIEVNAVTANGFT 202
++VN NG T
Sbjct: 108 GVDVNEYDWNGGT 120
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 24/129 (18%)
Query: 61 RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKP 120
R SALHIA +K + VK L++ +G N +H A R
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVE-----------NGAN-VHARAC----------GRFFQ 131
Query: 121 DAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILH--LAVADKQ 178
+GE L L Q + + +LLEN L A D G T+LH + ++D
Sbjct: 132 KGQGTCFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNS 191
Query: 179 IEAIKLLTT 187
E I L+T+
Sbjct: 192 AENIALVTS 200
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 98 NPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD-- 155
+PL LAA + L +L + + R GET LH+ ++ LEA L+E +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
E + ++ G T LH+AV ++ + ++ L A
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRK----SSALHIASQKGYVGIVKALL 82
+ ET LH+AAL + + A ++ P + E + + +ALHIA V +V+ALL
Sbjct: 36 MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL 95
Query: 83 ------------QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG 130
V + + G +PL AA G +++ L D A+ G
Sbjct: 96 ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLG 154
Query: 131 ETILHLCV 138
T+LH+ +
Sbjct: 155 NTVLHILI 162
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 71 QKGYVGIVKALLQVIPD----------KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKP 120
Q G + LLQ+ D +C+D G + LH+A + + ++ L
Sbjct: 68 QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 127
Query: 121 DA---ASARLI---------WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMT 168
D A R +GE L L Q + + +LLEN L A D G T
Sbjct: 128 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT 187
Query: 169 ILH--LAVADKQIE 180
+LH + +AD E
Sbjct: 188 VLHALVMIADNSPE 201
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 23/128 (17%)
Query: 61 RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKP 120
R +ALHIA ++ K ++++ +K +D R +P
Sbjct: 92 RGQTALHIAIERR----CKHYVELLVEKGADVHAQARGRFF-----------------QP 130
Query: 121 DAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILH--LAVADKQ 178
+GE L L NQ + +L EN L +D G T+LH +A+AD
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190
Query: 179 IEAIKLLT 186
E K +T
Sbjct: 191 RENTKFVT 198
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 24/134 (17%)
Query: 71 QKGYVGIVKALLQVIPD----------KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKP 120
Q G + LLQ+ D +C+D G + LH+A + + ++ L
Sbjct: 55 QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114
Query: 121 DA---ASARLI---------WGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMT 168
D A R +GE L L Q + + +LLEN L A D G T
Sbjct: 115 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT 174
Query: 169 ILH--LAVADKQIE 180
+LH + +AD E
Sbjct: 175 VLHALVMIADNSPE 188
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 79 KALLQVIPDKCSD-TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC 137
+AL Q++ D+ D D +GR L A G + LA A D + G T LH+
Sbjct: 58 QALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117
Query: 138 VKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173
+ + E ++ L+E D E+ +D+ G+T L LA
Sbjct: 118 AGYVRPEVVEALVELGADIEV---EDERGLTALELA 150
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 9/171 (5%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+PLH A L GH K +L+ ++ + + + L A G V LLQ
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
++D+ +P+H AA RGH++ + L A ++ T L+L ++ Q +K L
Sbjct: 97 PESDL--ASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKL 153
Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200
LE+ D +D + LH AVA E + L + A A G
Sbjct: 154 LESGADVNQGKGQD----SPLH-AVARTASEELACLLMDFGADTQAKNAEG 199
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+P+H AA+ GH+ + ++ Q + + + S LH A G++ VK LL+ +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKH-GAQV 62
Query: 90 SDTDVDGRNPLHLAAMRGHID----VLEELARAKPDAASARLIWGETILHLCVKHNQLEA 145
+ D PL A + G D +L+ A +P++ A I H + +E
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI------HEAARRGHVEC 116
Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
+ L+ G+ ++ K + T L+LA ++Q +K L S A
Sbjct: 117 VNSLIAYGGN---IDHKISHLGTPLYLACENQQRACVKKLLESGA 158
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 103 AAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK 162
A G +D +++ AK + + L G LH QLE L+FLL D +NA
Sbjct: 14 ALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAP 69
Query: 163 DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD 205
D + +T L AV + + +KLL + A + +G TA++
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGA-DKTVKGPDGLTAFE 111
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 18 IVERPTVNCLSETPLHVAALLGHEDFAKEILRQ--KPRIAEELDSRKSSALHIASQKGYV 75
+V +N +T L V + G A E+L+Q P + D+ +S +H A++ G++
Sbjct: 32 LVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQ---DTSGTSPVHDAARTGFL 87
Query: 76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELA 116
+K L++ D + D G P+HLA GH V+ LA
Sbjct: 88 DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 1 MAGSVNTLLELRQQDPLIVERPTVNCLSET-PLHVAALLGHEDFAKEILRQKPRIAEELD 59
M GS LEL +Q P V S T P+H AA G D K ++ + D
Sbjct: 50 MFGSTAIALELLKQG----ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-D 104
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLE 113
+ +H+A Q+G+ +V L D G PL LA RG D+++
Sbjct: 105 GTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQRGAQDLVD 156
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 18 IVERPTVNCLSETPLHVAALLGHEDFAKEILRQ--KPRIAEELDSRKSSALHIASQKGYV 75
+V +N +T L V + G A E+L+Q P + D+ +S +H A++ G++
Sbjct: 26 LVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQ---DTSGTSPVHDAARTGFL 81
Query: 76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELA 116
+K L++ D + D G P+HLA GH V+ LA
Sbjct: 82 DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 1 MAGSVNTLLELRQQDPLIVERPTVNCLSET-PLHVAALLGHEDFAKEILRQKPRIAEELD 59
M GS LEL +Q P V S T P+H AA G D K ++ + D
Sbjct: 44 MFGSTAIALELLKQGA----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-D 98
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
+ +H+A Q+G+ +V L D G PL LA RG D+++ L
Sbjct: 99 GTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
+ALH A+Q IVK L+ D DG+ P+ LAA G I+V+ L
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 79 KALLQVIPDKCSD-TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC 137
+AL Q++ D+ D D +GR L A G + LA A D + G T LH+
Sbjct: 59 QALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118
Query: 138 VKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173
+ + E ++ L+E D E+ +D+ G+T L LA
Sbjct: 119 AGYVRPEVVEALVELGADIEV---EDERGLTALELA 151
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQV-----IPDKCSDTDVDGRNPLHLAAMRGHIDVLE 113
D S LH A ++G +V+ L+ + ++ DT PLHLAA GH D+++
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT------PLHLAASHGHRDIVQ 84
Query: 114 ELARAKPD 121
+L + K D
Sbjct: 85 KLLQYKAD 92
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 17 LIVERPTVNCLS---ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIAS 70
LI+ +N ++ +TPLH+AA GH D +++L+ K I ++ + LH A
Sbjct: 53 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYAC 108
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQV-----IPDKCSDTDVDGRNPLHLAAMRGHIDVLE 113
D S LH A ++G +V+ L+ + ++ DT PLHLAA GH D+++
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT------PLHLAASHGHRDIVQ 89
Query: 114 ELARAKPD 121
+L + K D
Sbjct: 90 KLLQYKAD 97
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 17 LIVERPTVNCLS---ETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIAS 70
LI+ +N ++ +TPLH+AA GH D +++L+ K I ++ + LH A
Sbjct: 58 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYAC 113
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 9/171 (5%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+PLH A L GH K +L+ ++ + + + L A G V LLQ
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFL 149
++D+ +P+H AA RGH++ + L A ++ T L+L ++ Q +K L
Sbjct: 153 PESDL--ASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKL 209
Query: 150 LENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200
LE+ D +D + LH AV E + L + A A G
Sbjct: 210 LESGADVNQGKGQD----SPLH-AVVRTASEELACLLMDFGADTQAKNAEG 255
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
+P+H AA+ GH+ + ++ Q + + + S LH A G++ VK LL+ +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHG-AQV 118
Query: 90 SDTDVDGRNPLHLAAMRGHID----VLEELARAKPDAASARLIWGETILHLCVKHNQLEA 145
+ D PL A + G D +L+ A +P++ A I H + +E
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI------HEAARRGHVEC 172
Query: 146 LKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
+ L+ G+ ++ K + T L+LA ++Q +K L S A
Sbjct: 173 VNSLIAYGGN---IDHKISHLGTPLYLACENQQRACVKKLLESGA 214
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 18 IVERPTVNCLSETPLHVAALLGHEDFAKEILRQ--KPRIAEELDSRKSSALHIASQKGYV 75
+V +N +T L V + G A E+L+Q P + D+ +S +H A++ G++
Sbjct: 34 LVHPDALNRFGKTALQVM-MFGSPAVALELLKQGASPNVQ---DASGTSPVHDAARTGFL 89
Query: 76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELA 116
+K L++ D + D G P+HLA GH V+ LA
Sbjct: 90 DTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFLA 129
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 1 MAGSVNTLLELRQQDPLIVERPTVNCLSET-PLHVAALLGHEDFAKEILRQKPRIAEELD 59
M GS LEL +Q P V S T P+H AA G D K ++ + LD
Sbjct: 52 MFGSPAVALELLKQG----ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALD 106
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDK-CSDTDVDGRNPLHLAAMRG 107
S S +H+A ++G+ +V L P+ D G PL LA RG
Sbjct: 107 STGSLPIHLAIREGHSSVVSFL---APESDLHHRDASGLTPLELARQRG 152
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 159 LNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAW-DILAQSKRDTKDW 217
L +D G+ L L V Q+ +L+ +TA+ V GF +W D +A S D
Sbjct: 119 LVCQDWGGILGLTLPVDRPQL-VDRLIVMNTALAVGLSPGKGFESWRDFVANS----PDL 173
Query: 218 DIGELLRRA------GAISAQDLQLPANEL 241
D+G+L++RA ++A D P E
Sbjct: 174 DVGKLMQRAIPGITDAEVAAYDAPFPGPEF 203
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 18 IVERPTVNCLSETPLHVAALLGHEDFAKEILRQ--KPRIAEELDSRKSSALHIASQKGYV 75
+V +N +T L V + G A E+L+Q P + D+ +S +H A++ G++
Sbjct: 32 LVHPDALNRFGKTALQVM-MFGSPAVALELLKQGASPNVQ---DASGTSPVHDAARTGFL 87
Query: 76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELA 116
+K L++ D + D G P+HLA GH V+ LA
Sbjct: 88 DTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFLA 127
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 1 MAGSVNTLLELRQQDPLIVERPTVNCLSET-PLHVAALLGHEDFAKEILRQKPRIAEELD 59
M GS LEL +Q P V S T P+H AA G D K ++ + LD
Sbjct: 50 MFGSPAVALELLKQG----ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALD 104
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDK-CSDTDVDGRNPLHLAAMRG 107
S S +H+A ++G+ +V L P+ D G PL LA RG
Sbjct: 105 STGSLPIHLAIREGHSSVVSFL---APESDLHHRDASGLTPLELARQRG 150
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 103 AAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK 162
A G +D +++ AK + + L G LH QLE L+FLL D +NA
Sbjct: 9 ALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAP 64
Query: 163 DDYGMTILHLAVADKQIEAIKLLTTSTA 190
D + +T L AV + + +KLL + A
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGA 92
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 119 KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILH--LAVAD 176
+P +GE L L NQ + +L EN + +D G T+LH +A+AD
Sbjct: 127 QPKDEGGYFYFGELPLSLAACTNQPHIVNYLTENPHKKADMRRQDSRGNTVLHALVAIAD 186
Query: 177 KQIEAIKLLT 186
E K +T
Sbjct: 187 NTRENTKFVT 196
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 54 IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC-SDTDVDGRNPLHLAAMRGHIDVL 112
I + + + A +A++ G++ ++ L ++ P + + + + LAA GH+ VL
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAENGHLHVL 179
Query: 113 EELARAKPDAASA 125
L P A+A
Sbjct: 180 NRLCELAPTEATA 192
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 98 NPLHLA-----AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152
NPL LA ++ G D+++ + + D S G T LH V E +KFL++
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ- 91
Query: 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
G + +NA D G T LH A + ++ K L S A
Sbjct: 92 FGVN--VNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
+ALH A G+ IVK L+Q + + D DG PLH AA ++ V + L +
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 3 GSVNTLLE-LRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILR--QKPRIAEELD 59
G ++ L E LR+ D L V +P TPL A+ G + + +L P I L
Sbjct: 13 GELDQLKEHLRKGDNL-VNKPDERGF--TPLIWASAFGEIETVRFLLEWGADPHI---LA 66
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
+ SAL +AS GY IV LL+ D + D +G PL A H+ +E L
Sbjct: 67 KERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEAL 121
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 98 NPLHL---AAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154
NPL L +++ G D+++ + + D S G T LH V E +KFL++ G
Sbjct: 36 NPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ-FG 93
Query: 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190
+ +NA D G T LH A + ++ K L S A
Sbjct: 94 VN--VNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARA 118
+ALH A G+ IVK L+Q + + D DG PLH AA ++ V + L +
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 3 GSVNTLLE-LRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILR--QKPRIAEELD 59
G ++ L E LR+ D L V +P TPL A+ G + + +L P I L
Sbjct: 13 GELDQLKEHLRKGDNL-VNKPDERGF--TPLIWASAFGEIETVRFLLEWGADPHI---LA 66
Query: 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEEL 115
+ SAL +AS GY IV LL+ D + D +G PL A H+ +E L
Sbjct: 67 KERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVHGNHVKCVEAL 121
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 131 ETILHLCVK---HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT 187
ET LHL V+ L + FL++N G+ L+ + G T LH E +KLL
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTALHYCCLTDNAECLKLLLR 226
Query: 188 STAIEVNAVTANGFTAWDILAQSKRD 213
A + +G T DI + K +
Sbjct: 227 GKA-SIEIANESGETPLDIAKRLKHE 251
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 21 RPTVNCLSE---TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKS---SALHIASQKGY 74
R VN L + T L+ A GH+D + + Q P I EL+ + +ALH A+ KGY
Sbjct: 96 RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ-PNI--ELNQQNKLGDTALHAAAWKGY 152
Query: 75 VGIVKALL 82
IV+ LL
Sbjct: 153 ADIVQLLL 160
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 149 LLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
L+EN ++ AKD+ G+ I+ + A AIK L T + + V NGF
Sbjct: 50 LIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF 102
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 30/150 (20%)
Query: 59 DSRKSSALHIASQKGYVGIVKALLQ--VIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELA 116
D +H+A++KG V+ L++ V P + + G LHLA G +D + LA
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSP---TIQNRFGCTALHLACKFGCVDTAKYLA 73
Query: 117 RAKPDAASARLIW-GETILHLCVKHNQLEALKFLLENMGD-----SELLNAKDDY----- 165
+W G+ +HL V N+ + + L+E + LLN D+
Sbjct: 74 ----SVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEI 129
Query: 166 --------GMTILH--LAVADKQIEAIKLL 185
G T LH + + + +E IK+L
Sbjct: 130 GSHVKHCKGQTALHWCVGLGPEYLEXIKIL 159
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 149 LLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF 201
L+EN ++ AKD+ G+ I+ + A AIK L T + + V NGF
Sbjct: 50 LIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF 102
>pdb|3B0H|A Chain A, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
pdb|3B0H|B Chain B, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
Length = 588
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 38 LGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGR 97
LG E F E++++ P+ + +S + ++ Y+G V P K G
Sbjct: 343 LGVEGFRAEVVKRMPQQKLDRESTEDLVQKQWERREYLG-------VHPQKQEGYSFVG- 394
Query: 98 NPLHLAAMRGHIDVLEELARAKPDAASA--RLIWGETILHLCVKHNQLEAL 146
LH+ R D ++ELAR + S RL + I+ VK++++EAL
Sbjct: 395 --LHIPVGRVQADDMDELARLADEYGSGELRLTVEQNIIIPNVKNSKIEAL 443
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC 89
TPL + A + A E L Q + DS LH A+ G+ G+ L+ D
Sbjct: 237 TPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-L 294
Query: 90 SDTDVDGRNPLHLAAMRGHIDVLEELARAK 119
D +GR+PL +A + D++ L AK
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAK 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,979,823
Number of Sequences: 62578
Number of extensions: 385742
Number of successful extensions: 1661
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 353
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)