Query 041009
Match_columns 434
No_of_seqs 410 out of 3317
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f8y_A Notch homolog 1, transl 100.0 2.9E-37 1E-41 278.8 22.6 220 2-233 1-220 (223)
2 3aji_A 26S proteasome non-ATPa 100.0 1E-36 3.4E-41 276.8 22.3 215 2-229 16-230 (231)
3 1yyh_A HN1;, notch 1, ankyrin 100.0 2.3E-36 7.7E-41 278.9 22.2 212 3-226 34-245 (253)
4 1oy3_D Transcription factor in 100.0 4.7E-36 1.6E-40 280.4 22.7 210 22-240 3-261 (282)
5 1yyh_A HN1;, notch 1, ankyrin 100.0 6.2E-36 2.1E-40 276.0 19.6 204 21-233 3-219 (253)
6 2dzn_A Probable 26S proteasome 100.0 2.4E-35 8.2E-40 267.0 22.1 209 2-225 12-226 (228)
7 3b7b_A Euchromatic histone-lys 100.0 4.7E-35 1.6E-39 266.9 23.1 198 3-209 22-219 (237)
8 1k1a_A B-cell lymphoma 3-encod 100.0 2.1E-35 7.1E-40 269.6 20.7 196 25-230 6-209 (241)
9 2xai_A ASB-9, ankyrin repeat a 100.0 6.2E-35 2.1E-39 270.6 22.8 210 2-229 13-222 (261)
10 1oy3_D Transcription factor in 100.0 2.6E-35 9.1E-40 275.3 20.5 203 2-209 19-267 (282)
11 1wdy_A 2-5A-dependent ribonucl 100.0 3.7E-34 1.3E-38 267.4 27.9 218 2-232 15-248 (285)
12 3b7b_A Euchromatic histone-lys 100.0 2.6E-34 8.8E-39 262.0 25.5 203 20-232 3-205 (237)
13 3utm_A Tankyrase-1; tankyrase, 100.0 2.6E-34 8.8E-39 276.9 26.6 220 2-233 34-309 (351)
14 3d9h_A CDNA FLJ77766, highly s 100.0 2.7E-34 9.2E-39 269.9 25.9 219 1-232 24-250 (285)
15 4b93_B Ankyrin repeat domain-c 100.0 9.8E-36 3.4E-40 277.1 15.7 201 2-209 21-227 (269)
16 3d9h_A CDNA FLJ77766, highly s 100.0 1E-34 3.5E-39 272.7 22.5 211 2-230 69-280 (285)
17 2dzn_A Probable 26S proteasome 100.0 4.5E-34 1.5E-38 258.7 24.9 197 28-232 2-203 (228)
18 3eu9_A Huntingtin-interacting 100.0 5.2E-34 1.8E-38 259.7 24.9 216 2-230 19-236 (240)
19 1wdy_A 2-5A-dependent ribonucl 100.0 1.3E-33 4.4E-38 263.8 27.9 218 2-232 49-281 (285)
20 1k1a_A B-cell lymphoma 3-encod 100.0 4.8E-34 1.6E-38 260.6 23.1 214 2-227 19-239 (241)
21 1ikn_D Protein (I-kappa-B-alph 100.0 1.3E-35 4.4E-40 270.7 12.6 201 23-232 3-212 (236)
22 2rfa_A Transient receptor pote 100.0 2.8E-34 9.5E-39 261.0 20.8 197 27-232 2-225 (232)
23 2xai_A ASB-9, ankyrin repeat a 100.0 8.4E-34 2.9E-38 263.0 23.7 196 27-235 2-197 (261)
24 3hra_A Ankyrin repeat family p 100.0 9E-34 3.1E-38 251.7 22.6 194 25-227 2-201 (201)
25 3ljn_A Hypothetical protein; a 100.0 4E-34 1.4E-38 278.0 21.9 216 2-230 30-270 (364)
26 1n11_A Ankyrin; clathrin, BAND 100.0 1.7E-33 5.7E-38 280.3 26.5 218 2-233 156-373 (437)
27 4g8k_A 2-5A-dependent ribonucl 100.0 1.9E-33 6.6E-38 270.2 26.0 219 2-231 35-300 (337)
28 3aji_A 26S proteasome non-ATPa 100.0 2.5E-33 8.7E-38 254.3 25.0 198 25-232 3-200 (231)
29 3kea_A K1L; tropism, ANK repea 100.0 3.7E-34 1.3E-38 268.9 19.6 212 2-232 9-223 (285)
30 1s70_B 130 kDa myosin-binding 100.0 2.5E-34 8.4E-39 271.4 17.9 199 2-209 50-274 (299)
31 2fo1_E LIN-12 protein; beta-ba 100.0 3.3E-34 1.1E-38 279.7 19.2 216 2-230 135-372 (373)
32 1n11_A Ankyrin; clathrin, BAND 100.0 8.8E-33 3E-37 275.1 27.7 218 2-233 24-241 (437)
33 3utm_A Tankyrase-1; tankyrase, 100.0 1.3E-32 4.4E-37 265.0 24.7 211 2-230 68-335 (351)
34 2etb_A Transient receptor pote 100.0 9.5E-34 3.3E-38 261.6 14.0 196 27-232 1-249 (256)
35 1s70_B 130 kDa myosin-binding 100.0 5.9E-33 2E-37 261.9 17.7 223 3-233 9-261 (299)
36 4gpm_A Engineered protein OR26 100.0 3.4E-32 1.2E-36 234.9 19.6 158 30-194 6-163 (169)
37 3ljn_A Hypothetical protein; a 100.0 1E-32 3.6E-37 268.0 18.3 201 20-232 12-239 (364)
38 4b93_B Ankyrin repeat domain-c 100.0 1.2E-32 4.1E-37 256.2 16.9 201 24-234 7-215 (269)
39 2pnn_A Transient receptor pote 100.0 7.5E-33 2.6E-37 258.1 14.5 199 22-229 7-258 (273)
40 3hra_A Ankyrin repeat family p 100.0 2.5E-31 8.5E-36 235.9 22.1 182 2-189 15-201 (201)
41 3kea_A K1L; tropism, ANK repea 100.0 2.5E-32 8.5E-37 256.4 16.4 207 2-232 41-249 (285)
42 2fo1_E LIN-12 protein; beta-ba 100.0 3.9E-32 1.3E-36 265.0 17.4 204 22-232 118-341 (373)
43 2rfa_A Transient receptor pote 100.0 3.2E-31 1.1E-35 240.7 21.7 185 2-190 13-221 (232)
44 3eu9_A Huntingtin-interacting 100.0 3.6E-31 1.2E-35 240.9 22.0 202 22-233 3-206 (240)
45 3jxi_A Vanilloid receptor-rela 100.0 1.8E-32 6.3E-37 253.4 12.3 198 25-232 2-253 (260)
46 4g8k_A 2-5A-dependent ribonucl 100.0 1.8E-30 6.2E-35 249.5 26.5 215 2-231 69-328 (337)
47 2f8y_A Notch homolog 1, transl 100.0 1.1E-30 3.6E-35 235.7 22.9 181 2-190 35-215 (223)
48 1ikn_D Protein (I-kappa-B-alph 100.0 3.1E-32 1.1E-36 248.3 11.9 202 2-209 18-228 (236)
49 3v30_A DNA-binding protein rfx 100.0 5.9E-31 2E-35 227.8 18.6 170 28-203 2-171 (172)
50 4gpm_A Engineered protein OR26 100.0 9.3E-31 3.2E-35 225.9 19.3 158 64-231 6-163 (169)
51 2pnn_A Transient receptor pote 100.0 7.7E-31 2.6E-35 244.4 15.0 202 2-205 23-272 (273)
52 2rfm_A Putative ankyrin repeat 100.0 3E-30 1E-34 227.5 18.0 163 22-190 29-191 (192)
53 1sw6_A Regulatory protein SWI6 100.0 6.5E-31 2.2E-35 251.7 13.5 188 5-209 110-325 (327)
54 2etb_A Transient receptor pote 100.0 4E-30 1.4E-34 237.2 16.1 181 2-190 12-245 (256)
55 4hbd_A KN motif and ankyrin re 100.0 2.4E-30 8.2E-35 241.7 14.4 192 27-227 75-273 (276)
56 3v31_A Ankyrin repeat family A 100.0 2E-29 6.9E-34 217.0 19.1 158 27-190 2-159 (167)
57 4hbd_A KN motif and ankyrin re 100.0 5.5E-30 1.9E-34 239.3 15.1 183 3-191 87-275 (276)
58 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.6E-29 8.8E-34 216.9 18.2 160 24-189 10-169 (169)
59 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.5E-29 5.1E-34 216.5 16.2 158 27-190 4-161 (162)
60 3jxi_A Vanilloid receptor-rela 100.0 6.6E-30 2.2E-34 236.2 13.8 187 2-190 15-249 (260)
61 2rfm_A Putative ankyrin repeat 100.0 3E-29 1E-33 221.0 16.8 164 54-227 27-190 (192)
62 3f6q_A Integrin-linked protein 100.0 3E-29 1E-33 218.6 16.2 169 26-200 3-171 (179)
63 3twr_A Tankyrase-2; ankyrin re 100.0 1.9E-29 6.6E-34 216.7 13.1 160 25-190 5-164 (165)
64 2vge_A RELA-associated inhibit 100.0 9.7E-32 3.3E-36 244.1 -2.5 193 8-209 1-197 (229)
65 1awc_B Protein (GA binding pro 100.0 1.6E-28 5.5E-33 208.3 17.1 151 28-185 2-152 (153)
66 1sw6_A Regulatory protein SWI6 100.0 1.7E-29 5.7E-34 241.9 12.3 212 3-232 58-311 (327)
67 3v31_A Ankyrin repeat family A 100.0 1.7E-28 5.8E-33 211.2 17.0 160 61-230 2-161 (167)
68 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.3E-28 7.9E-33 207.8 16.3 154 28-188 2-155 (156)
69 2y1l_E Darpin-8.4; hydrolase-i 100.0 6.4E-28 2.2E-32 208.1 18.4 161 57-227 9-169 (169)
70 1ihb_A P18-INK4C(INK6), cyclin 100.0 3E-28 1E-32 208.3 16.2 160 60-229 3-162 (162)
71 3v30_A DNA-binding protein rfx 100.0 2.8E-28 9.5E-33 210.9 15.7 161 62-231 2-162 (172)
72 3twr_A Tankyrase-2; ankyrin re 100.0 3.1E-28 1.1E-32 209.1 14.1 161 58-228 4-164 (165)
73 3f6q_A Integrin-linked protein 100.0 1E-27 3.5E-32 208.8 16.5 164 60-232 3-166 (179)
74 1awc_B Protein (GA binding pro 100.0 3.4E-27 1.2E-31 200.1 17.6 151 62-223 2-152 (153)
75 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.9E-28 6.4E-33 223.9 8.8 176 26-209 3-190 (239)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 8.4E-27 2.9E-31 198.1 16.6 153 62-225 2-154 (156)
77 1bi7_B P16INK4A, MTS1, multipl 99.9 6.5E-26 2.2E-30 192.9 11.2 141 58-205 8-149 (156)
78 3t8k_A Uncharacterized protein 99.9 3.2E-26 1.1E-30 200.6 9.2 162 28-197 6-184 (186)
79 1d9s_A Cyclin-dependent kinase 99.9 2.4E-25 8.1E-30 184.8 13.1 130 22-155 6-136 (136)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 9.7E-26 3.3E-30 191.8 10.6 144 23-173 7-151 (156)
81 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.7E-26 2.3E-30 206.9 9.3 164 59-231 2-166 (239)
82 1d9s_A Cyclin-dependent kinase 99.9 3E-25 1E-29 184.2 12.2 130 55-190 5-135 (136)
83 2aja_A Ankyrin repeat family p 99.9 7E-27 2.4E-31 226.7 -0.5 159 25-195 89-253 (376)
84 2vge_A RELA-associated inhibit 99.9 2.6E-25 8.8E-30 201.7 8.5 173 44-229 1-178 (229)
85 1n0r_A 4ANK, 4 ankyrin repeats 99.9 9.7E-24 3.3E-28 171.9 16.3 124 28-154 2-125 (126)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 4.9E-24 1.7E-28 176.9 13.3 124 26-152 12-135 (136)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 7.3E-24 2.5E-28 175.8 14.1 128 57-189 9-136 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.9E-23 6.5E-28 170.1 16.1 125 61-190 1-125 (126)
89 2aja_A Ankyrin repeat family p 99.9 5.6E-26 1.9E-30 220.4 -0.0 207 2-229 102-344 (376)
90 3t8k_A Uncharacterized protein 99.9 1.6E-24 5.6E-29 189.7 8.5 154 62-226 6-176 (186)
91 3c5r_A BARD-1, BRCA1-associate 99.9 1.5E-23 5E-28 174.1 9.6 127 57-188 5-131 (137)
92 3deo_A Signal recognition part 99.9 1.7E-23 5.8E-28 182.8 10.4 140 25-188 41-181 (183)
93 3ui2_A Signal recognition part 99.9 2.1E-23 7.3E-28 190.9 10.5 139 26-188 43-182 (244)
94 2b0o_E UPLC1; arfgap, structur 99.9 5.1E-23 1.7E-27 194.2 13.0 139 61-210 150-296 (301)
95 3ui2_A Signal recognition part 99.9 2.1E-24 7.1E-29 197.6 3.0 172 27-229 14-185 (244)
96 3deo_A Signal recognition part 99.9 7.7E-23 2.6E-27 178.6 12.1 142 58-226 40-181 (183)
97 3c5r_A BARD-1, BRCA1-associate 99.9 5.1E-23 1.7E-27 170.8 8.8 128 91-227 5-132 (137)
98 3ehr_A Osteoclast-stimulating 99.9 6.2E-23 2.1E-27 184.8 9.1 170 25-200 22-206 (222)
99 3aaa_C Myotrophin, protein V-1 99.9 1.6E-22 5.5E-27 164.5 9.9 109 26-137 5-113 (123)
100 3ehr_A Osteoclast-stimulating 99.9 9.2E-23 3.1E-27 183.7 8.8 136 25-163 70-206 (222)
101 3aaa_C Myotrophin, protein V-1 99.9 3E-22 1E-26 162.9 10.7 112 59-175 4-115 (123)
102 2b0o_E UPLC1; arfgap, structur 99.9 2.6E-21 9E-26 182.4 12.8 126 96-229 151-284 (301)
103 1dcq_A PYK2-associated protein 99.8 1E-20 3.4E-25 176.5 14.7 196 23-230 61-264 (278)
104 3jue_A Arfgap with coiled-coil 99.8 1.3E-20 4.3E-25 182.1 13.8 148 57-209 194-346 (368)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 4E-20 1.4E-24 142.4 12.2 92 27-120 1-92 (93)
106 3lvq_E ARF-GAP with SH3 domain 99.8 3.6E-20 1.2E-24 187.1 15.0 136 64-205 134-278 (497)
107 3jue_A Arfgap with coiled-coil 99.8 3.1E-20 1.1E-24 179.3 14.0 143 29-174 200-345 (368)
108 3lvq_E ARF-GAP with SH3 domain 99.8 8.5E-20 2.9E-24 184.3 14.9 136 28-175 132-276 (497)
109 1dcq_A PYK2-associated protein 99.8 2.6E-19 8.8E-24 166.9 17.0 128 59-190 127-262 (278)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.2E-19 7.6E-24 138.2 12.2 91 62-154 2-92 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 1.5E-19 5.2E-24 144.9 8.3 108 92-204 5-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.9E-19 6.5E-24 144.3 7.6 107 24-133 5-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 2.5E-17 8.4E-22 131.0 9.8 92 22-115 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1E-16 3.6E-21 127.3 10.4 92 56-149 18-109 (110)
115 4hkr_A Calcium release-activat 61.7 72 0.0025 26.8 16.0 28 307-334 59-86 (214)
116 3gvo_A Pumilio 2, pumilio homo 40.0 17 0.00058 33.8 3.2 164 24-187 69-238 (351)
117 2knc_B Integrin beta-3; transm 31.8 1.3E+02 0.0045 21.0 7.9 7 398-404 32-38 (79)
118 3gvo_A Pumilio 2, pumilio homo 24.5 82 0.0028 29.0 5.0 157 24-182 105-269 (351)
119 4a01_A Proton pyrophosphatase; 23.4 6E+02 0.02 26.0 10.9 54 316-369 332-386 (766)
No 1
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.9e-37 Score=278.80 Aligned_cols=220 Identities=23% Similarity=0.251 Sum_probs=200.6
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.++++.|++.+.+.. ...|..|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|
T Consensus 1 gg~~~~i~~Ll~~g~~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 77 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLH--NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQIL 77 (223)
T ss_dssp ----CCEETTEETTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHHHcCCCcc--cccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 378899999999987753 334788999999999999999999999999887 78899999999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 161 (434)
++.++...+..|..|.||||+|+..|+.+++++|++++++. ...|..|+||||+|+..|+.+++++|+++|++ ++.
T Consensus 78 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~ 153 (223)
T 2f8y_A 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDM 153 (223)
T ss_dssp HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTC
T ss_pred HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCC
Confidence 99998666889999999999999999999999999999887 66788899999999999999999999999998 889
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009 162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD 233 (434)
Q Consensus 162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~ 233 (434)
+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+. .+..+++++|.+.|+...++
T Consensus 154 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~i~~~L~~~g~~~~~~ 220 (223)
T 2f8y_A 154 QNNREETPLFLAAREGSYETAKVLLDHFA-NRDITDHMDRLPRDIAQE----RMHHDIVRLLDEYNLVRSPQ 220 (223)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCSSCC-
T ss_pred cCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCccccccCCCHHHHHHH----hcchHHHHHHHHcCCCcccc
Confidence 99999999999999999999999999988 999999999999999999 77789999999999986554
No 2
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1e-36 Score=276.82 Aligned_cols=215 Identities=25% Similarity=0.292 Sum_probs=199.8
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+++.++++++.++... +..|..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+..|+.+++++|
T Consensus 16 ~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 92 (231)
T 3aji_A 16 SGKLDELKERILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKAL 92 (231)
T ss_dssp HTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHhchhhh--hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHH
Confidence 589999999999887653 556888999999999999999999999999887 78899999999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 161 (434)
++++.+. +..|..|.||||+|+..|+.+++++|++++.++ ...+..|.||||+|+..|+.+++++|++.|++ ++.
T Consensus 93 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~ 167 (231)
T 3aji_A 93 LVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNI 167 (231)
T ss_dssp HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCC
T ss_pred HHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccc
Confidence 9999987 788999999999999999999999999999887 66788899999999999999999999999999 889
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009 162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229 (434)
Q Consensus 162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~ 229 (434)
+|.+|+||||+|+..++.+++++|+++|+ +++.+|..|.||+|+|.. .+..++.++|.++|++
T Consensus 168 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 168 QDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIENKEEKTPLQVAKG----GLGLILKRLAEGEEAS 230 (231)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHSCH----HHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHh----hHHHHHHHHHcccccc
Confidence 99999999999999999999999999988 999999999999999987 6678899999987654
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.3e-36 Score=278.91 Aligned_cols=212 Identities=24% Similarity=0.253 Sum_probs=182.9
Q ss_pred CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041009 3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82 (434)
Q Consensus 3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll 82 (434)
++.++++.|++.+++.. ...|..|.||||+|+..|+.++++.|+++++++ +..|..|+||||+|+..|+.+++++|+
T Consensus 34 ~~~~~v~~Ll~~g~~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 110 (253)
T 1yyh_A 34 DAPAVISDFIYQGASLH--NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI 110 (253)
T ss_dssp --------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CChHHHHHHHHccCCcc--cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 48999999999997753 335788999999999999999999999999987 788999999999999999999999999
Q ss_pred hhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCC
Q 041009 83 QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK 162 (434)
Q Consensus 83 ~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 162 (434)
+.++...+..|..|.||||+|+..|+.+++++|++++++. +..|..|+||||+|+.+|+.+++++|++.|++ ++.+
T Consensus 111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~ 186 (253)
T 1yyh_A 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQ 186 (253)
T ss_dssp HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCC
T ss_pred HcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCc
Confidence 9998555889999999999999999999999999999987 67788999999999999999999999999999 8899
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHc
Q 041009 163 DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA 226 (434)
Q Consensus 163 d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~ 226 (434)
|..|+||||+|+..|+.+++++|+++|+ +++.+|..|+||+|+|+. .++.+++++|...
T Consensus 187 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~~A~~----~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 187 NNREETPLFLAAREGSYETAKVLLDHFA-NRDITDHMDRLPRDIAQE----RMHHDIVRLLDLE 245 (253)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCC-CccccccCCCCHHHHHHH----cCCHHHHHHHHHH
Confidence 9999999999999999999999999988 999999999999999999 7788999998854
No 4
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.7e-36 Score=280.42 Aligned_cols=210 Identities=26% Similarity=0.254 Sum_probs=186.6
Q ss_pred cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCc--hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCH
Q 041009 22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPR--IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP 99 (434)
Q Consensus 22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp 99 (434)
+.+|.+|.||||+||..|+.+++++|++.+++ .++..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tp 81 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA 81 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence 44688999999999999999999999998876 25888999999999999999999999999999988 7899999999
Q ss_pred HHHHHHhCCHHHHHHHHHhCCcc----------------------------------------------cccccCCCChH
Q 041009 100 LHLAAMRGHIDVLEELARAKPDA----------------------------------------------ASARLIWGETI 133 (434)
Q Consensus 100 L~~Aa~~g~~~~v~~Ll~~~~~~----------------------------------------------~~~~~~~g~t~ 133 (434)
||+|+..|+.+++++|++++++. ....+..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 99999999999999999987652 24567789999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCccccCCCC-CCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccC
Q 041009 134 LHLCVKHNQLEALKFLLENMGDSELLNAKDD-YGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212 (434)
Q Consensus 134 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~ 212 (434)
||+|+.+|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+.
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~--- 234 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMYGGRTPLGSALL--- 234 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHT---
T ss_pred HHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCcccccCCCCHHHHHHH---
Confidence 9999999999999999999999 788875 49999999999999999999999988 999999999999999998
Q ss_pred CCchhHHHHHHHHcCCCccccCCCChhh
Q 041009 213 DTKDWDIGELLRRAGAISAQDLQLPANE 240 (434)
Q Consensus 213 ~~~~~~i~~~L~~~g~~~~~~~~~~~~~ 240 (434)
.+..+++++|+++|++...........
T Consensus 235 -~~~~~~v~~Ll~~ga~~~~~~~~g~tp 261 (282)
T 1oy3_D 235 -RPNPILARLLRAHGAPEPEDGGDKLSP 261 (282)
T ss_dssp -SSCHHHHHHHHHTTCCCCCCC------
T ss_pred -cCCcHHHHHHHHcCCCcCcCCCccccc
Confidence 677899999999999976544443333
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.2e-36 Score=275.95 Aligned_cols=204 Identities=25% Similarity=0.258 Sum_probs=158.7
Q ss_pred ccccCCCCCCHHHHHHhcC-------------CHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCC
Q 041009 21 RPTVNCLSETPLHVAALLG-------------HEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87 (434)
Q Consensus 21 ~~~~~~~g~t~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~ 87 (434)
.+.+|.+|.||||+|+..| +.++++.|++.++++.+..|..|.||||+|+..|+.+++++|++.+++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4567889999999999987 899999999999998777899999999999999999999999999998
Q ss_pred CCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCC
Q 041009 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGM 167 (434)
Q Consensus 88 ~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~ 167 (434)
. +..|..|.||||+|+..|+.+++++|+++++......+..|.||||+|+..|+.+++++|++.|++ ++.+|.+|+
T Consensus 83 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~ 158 (253)
T 1yyh_A 83 A-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGK 158 (253)
T ss_dssp T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC---TTCBCTTSC
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---CCCcCCCCC
Confidence 7 789999999999999999999999999999866688889999999999999999999999999999 899999999
Q ss_pred cHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009 168 TILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD 233 (434)
Q Consensus 168 t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~ 233 (434)
||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+. .+..+++++|++.|++....
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~~ 219 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDIT 219 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCcccc
Confidence 99999999999999999999988 999999999999999998 66789999999999986543
No 6
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.4e-35 Score=267.04 Aligned_cols=209 Identities=21% Similarity=0.241 Sum_probs=164.8
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcC--CchhhccCCCCCcHHHHHHHcCCHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQK--PRIAEELDSRKSSALHIASQKGYVGIVK 79 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~Aa~~g~~~iv~ 79 (434)
.|+.+.++.|++.++... ...|..|.||||+|+..|+.+++++|++.+ .+.....|..|.||||+|+..|+.++++
T Consensus 12 ~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 89 (228)
T 2dzn_A 12 ENEFFKVQELLHSKPSLL--LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89 (228)
T ss_dssp TTCHHHHHHHHHHCGGGT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred hCCHHHHHHHHhcCcccc--ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHH
Confidence 578888888888876543 335777888888888888888888888887 5553336788888888888888888888
Q ss_pred HHHhhC--CCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhc-CCC
Q 041009 80 ALLQVI--PDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENM-GDS 156 (434)
Q Consensus 80 ~Ll~~~--~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~ 156 (434)
+|++.+ .+. +..|..|.||||.|+..|+.+++++|++++.+. +..|..|+||||+|+..|+.+++++|++.| .+
T Consensus 90 ~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~- 166 (228)
T 2dzn_A 90 SLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA- 166 (228)
T ss_dssp HHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC-
T ss_pred HHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc-
Confidence 888887 554 667788888888888888888888888887776 566777888888888888888888888888 66
Q ss_pred ccccCCCCCCCcHHHHHHHcCcHHHHHHhh-hcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHH
Q 041009 157 ELLNAKDDYGMTILHLAVADKQIEAIKLLT-TSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR 225 (434)
Q Consensus 157 ~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll-~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~ 225 (434)
++.+|.+|+||||+|+..|+.+++++|+ +.|+ +++.+|.+|.||+|+|.+ .++.++|.+
T Consensus 167 --~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga-~~~~~~~~g~t~l~~A~~-------~~~~~~l~~ 226 (228)
T 2dzn_A 167 --VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA-EYDLVDNKGAKAEDVALN-------EQVKKFFLN 226 (228)
T ss_dssp --SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC-CSCCBCTTSCBGGGGCSS-------TTHHHHHHT
T ss_pred --ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-CCCccCCCCCcHHHHHHH-------HHHHHHHHh
Confidence 7788888888888888888888888888 5665 888888888888888754 245555543
No 7
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.7e-35 Score=266.86 Aligned_cols=198 Identities=24% Similarity=0.260 Sum_probs=96.3
Q ss_pred CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHH
Q 041009 3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALL 82 (434)
Q Consensus 3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll 82 (434)
|+.++++.|++.+.++ +..+..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+
T Consensus 22 g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll 97 (237)
T 3b7b_A 22 GHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLL 97 (237)
T ss_dssp TCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCc---CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 4445555555544322 333444555555555555555555555544443 344444555555555555555555555
Q ss_pred hhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCC
Q 041009 83 QVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAK 162 (434)
Q Consensus 83 ~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 162 (434)
+.++...+..|..|.||||+|+..|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|++.|++ ++.+
T Consensus 98 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~ 173 (237)
T 3b7b_A 98 SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD---LHAV 173 (237)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC---TTCC
T ss_pred hCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCc
Confidence 5443222444444555555555555555555555544443 33344455555555555555555555555444 4444
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009 163 DDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ 209 (434)
Q Consensus 163 d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~ 209 (434)
|..|+||||+|+..++.+++++|+++|+ +++.+|.+|.||+|+|+.
T Consensus 174 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 174 NIHGDSPLHIAARENRYDCVVLFLSRDS-DVTLKNKEGETPLQCASL 219 (237)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHTTTC-CTTCCCTTSCCHHHHSCT
T ss_pred CCCCCCHHHHHHHhCCHhHHHHHHHcCC-CCCccCCCCCCHHHHHHH
Confidence 4455555555555555555555554444 455555555555555444
No 8
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.1e-35 Score=269.64 Aligned_cols=196 Identities=25% Similarity=0.297 Sum_probs=98.1
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHh----cCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHH
Q 041009 25 NCLSETPLHVAALLGHEDFAKEILR----QKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPL 100 (434)
Q Consensus 25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL 100 (434)
|.+|.||||+||..|+.++++.|++ .+.++ +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l 83 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA 83 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence 4445555555555555555555554 22222 444555555555555555555555555555444 44455555555
Q ss_pred HHHHHhCCHHHHHHHHHhCCc---ccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC-CCCCcHHHHHHHc
Q 041009 101 HLAAMRGHIDVLEELARAKPD---AASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD-DYGMTILHLAVAD 176 (434)
Q Consensus 101 ~~Aa~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d-~~g~t~LhlA~~~ 176 (434)
|+|+..|+.+++++|++.++. .....+..|.||||+|+..|+.+++++|++.|++ ++..| ..|.||||+|+..
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTTCCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC---cccccccCCCcHHHHHHHc
Confidence 555555555555555555441 1133344455555555555555555555555544 44444 4455555555555
Q ss_pred CcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009 177 KQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS 230 (434)
Q Consensus 177 ~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~ 230 (434)
|+.+++++|+++|. +++..|.+|.||+|+|+. .+..+++++|++.|++.
T Consensus 161 ~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~ 209 (241)
T 1k1a_A 161 NSLSMVQLLLQHGA-NVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADS 209 (241)
T ss_dssp TCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCT
T ss_pred CCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCC
Confidence 55555555555544 555555555555555554 33344555555555543
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.2e-35 Score=270.56 Aligned_cols=210 Identities=23% Similarity=0.237 Sum_probs=190.5
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.++++.|++.+.+ .+..|.+|.||||+|+..|+.++++.|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 13 ~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 88 (261)
T 2xai_A 13 HGHQLSLRNLISQGWA---VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLL 88 (261)
T ss_dssp HTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 5899999999999855 3667889999999999999999999999999887 88899999999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 161 (434)
++.+++. + .+.+|.||||+|+..|+.+++++|++++++. +..|..|+||||+|+.+|+.+++++|++.|++ ++.
T Consensus 89 l~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~ 162 (261)
T 2xai_A 89 LQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD---VNQ 162 (261)
T ss_dssp HHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCC---TTC
T ss_pred HHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCC---CCC
Confidence 9999887 3 4566999999999999999999999999887 66788899999999999999999999999998 664
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009 162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229 (434)
Q Consensus 162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~ 229 (434)
|..|+||||+|+..++.+++++|+++|+ |++.+|.+|+||+|+|+. ..++.++|.+.+..
T Consensus 163 -~~~g~t~Lh~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpl~~A~~------~~~~~~~ll~~~~~ 222 (261)
T 2xai_A 163 -GKGQDSPLHAVARTASEELACLLMDFGA-DTQAKNAEGKRPVELVPP------ESPLAQLFLEREGP 222 (261)
T ss_dssp -CBTTBCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCGGGGSCT------TCTHHHHHHHC-CC
T ss_pred -CCCCCChHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCChhhhccc------cccHHHHHHhccCC
Confidence 8899999999999999999999999988 999999999999999874 23488888887654
No 10
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.6e-35 Score=275.28 Aligned_cols=203 Identities=23% Similarity=0.201 Sum_probs=175.0
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.++++.|++.+......+..|..|.||||+||..|+.++++.|+++|+++ +..|..|.||||+|+..|+.+++++|
T Consensus 19 ~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~L 97 (282)
T 1oy3_D 19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVL 97 (282)
T ss_dssp TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhh
Confidence 68999999999987664334667889999999999999999999999999987 78899999999999999999999999
Q ss_pred HhhCCCC----------------------------------------------CccCCCCCCCHHHHHHHhCCHHHHHHH
Q 041009 82 LQVIPDK----------------------------------------------CSDTDVDGRNPLHLAAMRGHIDVLEEL 115 (434)
Q Consensus 82 l~~~~~~----------------------------------------------~~~~d~~g~tpL~~Aa~~g~~~~v~~L 115 (434)
++.+++. .+..|..|.||||+|+..|+.+++++|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 177 (282)
T 1oy3_D 98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177 (282)
T ss_dssp SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence 9987651 256788999999999999999999999
Q ss_pred HHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccc
Q 041009 116 ARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNA 195 (434)
Q Consensus 116 l~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~ 195 (434)
+++++++....+..|+||||+|+++|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.
T Consensus 178 l~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~ 253 (282)
T 1oy3_D 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLLRAHGA-PEPE 253 (282)
T ss_dssp HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC-CCCC
T ss_pred HHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCcHHHHHHHHcCC-CcCc
Confidence 9999998554445699999999999999999999999999 89999999999999999999999999999999 9999
Q ss_pred cccCCCCHHHHHHH
Q 041009 196 VTANGFTAWDILAQ 209 (434)
Q Consensus 196 ~n~~g~t~l~la~~ 209 (434)
+|.+|.||+++|..
T Consensus 254 ~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 254 DGGDKLSPCSSSGS 267 (282)
T ss_dssp CC------------
T ss_pred CCCcccccccccCC
Confidence 99999999999877
No 11
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.7e-34 Score=267.43 Aligned_cols=218 Identities=22% Similarity=0.225 Sum_probs=154.1
Q ss_pred CCChHHHHHHHhcCCCccccccc-CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTV-NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA 80 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~ 80 (434)
.|+++.++.|++.++++ +.. +..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++
T Consensus 15 ~g~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~ 90 (285)
T 1wdy_A 15 NEDVDLVQQLLEGGANV---NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKL 90 (285)
T ss_dssp TTCHHHHHHHHHTTCCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHcCCCc---ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHH
Confidence 57888888888877654 223 566788888888888888888888887776 6677788888888888888888888
Q ss_pred HHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccc---------cCCCChHHHHHHHcCCHHHHHHHHH
Q 041009 81 LLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASAR---------LIWGETILHLCVKHNQLEALKFLLE 151 (434)
Q Consensus 81 Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~---------~~~g~t~Lh~A~~~g~~~~v~~Ll~ 151 (434)
|++++.+. +..|..|.||||+|+..|+.+++++|++++++..... +..|.||||.|+..|+.+++++|++
T Consensus 91 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 169 (285)
T 1wdy_A 91 FLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169 (285)
T ss_dssp HHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 88887776 6677777888888888888888888777776653221 5557777777777777777777776
Q ss_pred h-cCCCccccCCCCCCCcHHHHHHHcCc----HHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHH-
Q 041009 152 N-MGDSELLNAKDDYGMTILHLAVADKQ----IEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRR- 225 (434)
Q Consensus 152 ~-~~~~~~~~~~d~~g~t~LhlA~~~~~----~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~- 225 (434)
. |.+ ++.+|..|+||||+|+..++ .+++++|+++|. +++.+|..|.||+|+|+. .+..+++++|.+
T Consensus 170 ~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ 241 (285)
T 1wdy_A 170 EMGAD---VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVE----KKHLGLVQRLLEQ 241 (285)
T ss_dssp TSCCC---TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-CSSCCCTTSCCHHHHHHH----TTCHHHHHHHHHS
T ss_pred hcCCC---CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHH----cCCHHHHHHHHhc
Confidence 5 555 56666666666666666666 666666666655 666666666666666666 445566666665
Q ss_pred cCCCccc
Q 041009 226 AGAISAQ 232 (434)
Q Consensus 226 ~g~~~~~ 232 (434)
.|++...
T Consensus 242 ~g~~~~~ 248 (285)
T 1wdy_A 242 EHIEIND 248 (285)
T ss_dssp SSCCTTC
T ss_pred cCCCccc
Confidence 5555433
No 12
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.6e-34 Score=261.96 Aligned_cols=203 Identities=22% Similarity=0.269 Sum_probs=190.1
Q ss_pred cccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCH
Q 041009 20 ERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP 99 (434)
Q Consensus 20 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp 99 (434)
+.+..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 80 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTC 80 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcH
Confidence 34567889999999999999999999999999987 788999999999999999999999999999887 7889999999
Q ss_pred HHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcH
Q 041009 100 LHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQI 179 (434)
Q Consensus 100 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~ 179 (434)
||+|+..|+.+++++|+++++......+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHCCCH
Confidence 99999999999999999999666678889999999999999999999999999999 889999999999999999999
Q ss_pred HHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 180 EAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 180 ~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
+++++|+++|. +++..|..|.||+|+|+. .+..+++++|.+.|++...
T Consensus 158 ~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~ 205 (237)
T 3b7b_A 158 DIAEILLAAKC-DLHAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDVTL 205 (237)
T ss_dssp HHHHHHHTTTC-CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTTC
T ss_pred HHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCCCc
Confidence 99999999988 999999999999999999 6778999999999988644
No 13
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.6e-34 Score=276.87 Aligned_cols=220 Identities=23% Similarity=0.230 Sum_probs=199.5
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
+||++.++.++...+. +.+..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 34 ~g~~~~v~~ll~~~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~L 110 (351)
T 3utm_A 34 SGNEEKLMALLTPLNV--NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELL 110 (351)
T ss_dssp HTCHHHHHHHCCTTTT--TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHhcCC--CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHH
Confidence 5899999999987543 34667889999999999999999999999999987 88899999999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccc-------------------------------------
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAAS------------------------------------- 124 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~------------------------------------- 124 (434)
++.+++. +..|..|.||||+|+..|+.+++++|++++.++..
T Consensus 111 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (351)
T 3utm_A 111 LKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA 189 (351)
T ss_dssp HHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhc
Confidence 9999987 78999999999999999999999999999877522
Q ss_pred ----------------cccCCCChHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009 125 ----------------ARLIWGETILHLCVKH---NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185 (434)
Q Consensus 125 ----------------~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L 185 (434)
..+..|.||||+|+.. +..+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|
T Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~L 266 (351)
T 3utm_A 190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN---VNEKNKDFMTPLHVAAERAHNDVMEVL 266 (351)
T ss_dssp CHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 2345688999999999 558999999999999 899999999999999999999999999
Q ss_pred hhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009 186 TTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD 233 (434)
Q Consensus 186 l~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~ 233 (434)
+++|+ +++.+|..|.||||+|+. .+..+++++|+++|++....
T Consensus 267 l~~ga-~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~~ 309 (351)
T 3utm_A 267 HKHGA-KMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPSII 309 (351)
T ss_dssp HHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTCC
T ss_pred HHCCC-CCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCCCc
Confidence 99988 999999999999999999 67789999999999986543
No 14
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=269.86 Aligned_cols=219 Identities=21% Similarity=0.200 Sum_probs=183.5
Q ss_pred CCCChHHHHHHHhcCCC--------cccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHc
Q 041009 1 MAGSVNTLLELRQQDPL--------IVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQK 72 (434)
Q Consensus 1 ~~G~~~~v~~Ll~~~~~--------~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~ 72 (434)
++|+.+.+..++..++. ....+..|..|.||||+||..|+.++++.|++.+.++ +..|..|.||||+|+..
T Consensus 24 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 102 (285)
T 3d9h_A 24 MDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLG 102 (285)
T ss_dssp ------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHT
T ss_pred hcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHC
Confidence 36787777776654322 0112456888999999999999999999999999886 88899999999999999
Q ss_pred CCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 041009 73 GYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152 (434)
Q Consensus 73 g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 152 (434)
|+.+++++|++.+++. +..|.+|.||||+|+..|+.+++++|++++++.. . +.+|.||||+|+..|+.+++++|++.
T Consensus 103 g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ 179 (285)
T 3d9h_A 103 GHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-P-ESDLASPIHEAARRGHVECVNSLIAY 179 (285)
T ss_dssp TCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-C-SCTTSCHHHHHHHHTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC-C-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 9999999999999887 7899999999999999999999999999998873 2 44599999999999999999999999
Q ss_pred cCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 153 MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 153 ~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
|++ ++.+|.+|+||||+|+..|+.+++++|++.|+ +++. |..|.||||+|+. .+..+++++|++.|++...
T Consensus 180 g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~-~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~ 250 (285)
T 3d9h_A 180 GGN---IDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQ-GKGQDSPLHAVVR----TASEELACLLMDFGADTQA 250 (285)
T ss_dssp TCC---TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC-CTTC-CBTTBCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred CCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC-CCCC-CCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence 998 89999999999999999999999999999987 8885 8999999999999 6778999999999988644
No 15
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-36 Score=277.10 Aligned_cols=201 Identities=23% Similarity=0.262 Sum_probs=159.9
Q ss_pred CCChHHHHHHHhcCCCccc-----ccccCCCCCCHHHHHHhcCCHH-HHHHHHhcCCchhhccCCCCCcHHHHHHHcCCH
Q 041009 2 AGSVNTLLELRQQDPLIVE-----RPTVNCLSETPLHVAALLGHED-FAKEILRQKPRIAEELDSRKSSALHIASQKGYV 75 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~-----~~~~~~~g~t~Lh~Aa~~g~~~-~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~ 75 (434)
+||+++|+.|++.+..... .+..+..|.||||.|+..++.+ +++.|++.|.++ +..|.+|+||||+|+..|+.
T Consensus 21 ~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~ 99 (269)
T 4b93_B 21 DGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRA 99 (269)
T ss_dssp TTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCCHHHHHHHTTCT
T ss_pred cCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence 6999999999997764321 2445678999999999988764 889999999987 88899999999999999999
Q ss_pred HHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009 76 GIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155 (434)
Q Consensus 76 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 155 (434)
+++++|++.+++. +..+.+|.||+|.|+..++.++++.|+++++++ +.+|..|+||||+|+.+|+.+++++|++.|++
T Consensus 100 ~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad 177 (269)
T 4b93_B 100 DLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177 (269)
T ss_dssp THHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC
T ss_pred HHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence 9999999999987 789999999999999999999999999999987 67789999999999999999999999999999
Q ss_pred CccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009 156 SELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ 209 (434)
Q Consensus 156 ~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~ 209 (434)
+|.+|..|+||||+|+..|+.+++++|+++|+ |++.+|.+|+||||+|++
T Consensus 178 ---vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga-d~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 178 ---INASNNKGNTALHEAVIEKHVFVVELLLLHGA-SVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp ---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-CSCCCCTTSCCSGGGSCT
T ss_pred ---CCccccCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHh
Confidence 89999999999999999999999999999988 999999999999999865
No 16
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=272.68 Aligned_cols=211 Identities=25% Similarity=0.257 Sum_probs=190.2
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.++++.|++.+.+ .+..|.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 69 ~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 144 (285)
T 3d9h_A 69 HGHQLSLRNLISQGWA---VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLL 144 (285)
T ss_dssp TTCHHHHHHHHHTTCC---SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHH
Confidence 6899999999999865 3667889999999999999999999999999887 78899999999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 161 (434)
++.+++. + .+.+|.||||+|+..|+.+++++|++++.+. +..|..|+||||+|+.+|+.+++++|++.|++ ++
T Consensus 145 l~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~- 217 (285)
T 3d9h_A 145 LQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD---VN- 217 (285)
T ss_dssp HHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC---TT-
T ss_pred HHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC---CC-
Confidence 9999887 3 3456999999999999999999999999987 67788999999999999999999999999998 66
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHc-CCCc
Q 041009 162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA-GAIS 230 (434)
Q Consensus 162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~-g~~~ 230 (434)
.|..|+||||+|+..++.+++++|+++|+ +++.+|.+|+||+|+|+. ..+++++|++. |++.
T Consensus 218 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~t~l~~A~~------~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 218 QGKGQDSPLHAVVRTASEELACLLMDFGA-DTQAKNAEGKRPVELVPP------ESPLAQLFLEREGASL 280 (285)
T ss_dssp CCBTTBCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCGGGGSCT------TSHHHHHHHHHC----
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHhcC------ccHHHHHHHHhhccCC
Confidence 48899999999999999999999999988 999999999999999874 25788888887 6554
No 17
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.5e-34 Score=258.68 Aligned_cols=197 Identities=27% Similarity=0.288 Sum_probs=181.9
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhC--CCCCccCCCCCCCHHHHHHH
Q 041009 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVI--PDKCSDTDVDGRNPLHLAAM 105 (434)
Q Consensus 28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpL~~Aa~ 105 (434)
|+||||.||..|+.++++.|++.+++..+..|..|.||||+|+..|+.+++++|++.+ .+.....|..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 7899999999999999999999999987878999999999999999999999999998 55533388999999999999
Q ss_pred hCCHHHHHHHHHhC--CcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHH
Q 041009 106 RGHIDVLEELARAK--PDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183 (434)
Q Consensus 106 ~g~~~~v~~Ll~~~--~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~ 183 (434)
.|+.+++++|++++ ++. ...+..|.||||.|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999998 555 66788899999999999999999999999999 8999999999999999999999999
Q ss_pred HhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHH-HcCCCccc
Q 041009 184 LLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLR-RAGAISAQ 232 (434)
Q Consensus 184 ~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~-~~g~~~~~ 232 (434)
+|++.+..+++.+|..|.||+|+|+. .+..+++++|. +.|++...
T Consensus 158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~~ 203 (228)
T 2dzn_A 158 LLCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDL 203 (228)
T ss_dssp HHHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCC
T ss_pred HHHhcCcccccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCCc
Confidence 99999955999999999999999999 67789999999 88988654
No 18
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=259.71 Aligned_cols=216 Identities=25% Similarity=0.220 Sum_probs=197.9
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.+.++.|++.+.++ +..+..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|
T Consensus 19 ~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L 95 (240)
T 3eu9_A 19 YGIYERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95 (240)
T ss_dssp TTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred cCChHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHH
Confidence 69999999999998553 567888999999999999999999999999998777777899999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCC-HHHHHHHHHhcCCCcccc
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQ-LEALKFLLENMGDSELLN 160 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-~~~v~~Ll~~~~~~~~~~ 160 (434)
++.+.+. +..|..|.||||.|+..|+.+++++|++++++. ...+..|.||||+|+..++ .+++++|++.+.+ ++
T Consensus 96 l~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~---~~ 170 (240)
T 3eu9_A 96 MKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VN 170 (240)
T ss_dssp HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC---TT
T ss_pred HHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC---cc
Confidence 9999887 788999999999999999999999999999887 6778899999999997776 8999999999999 78
Q ss_pred CCCC-CCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009 161 AKDD-YGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS 230 (434)
Q Consensus 161 ~~d~-~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~ 230 (434)
..+. .|+||||+|+..|+.+++++|+++|+ +++..|..|.||+|+|+. .+..+++++|.++++..
T Consensus 171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~----~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGA-NVDAQNIKGESALDLAKQ----RKNVWMINHLQEARQAK 236 (240)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHHC---
T ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHhhhcc
Confidence 8886 89999999999999999999999987 999999999999999999 77789999999988765
No 19
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-33 Score=263.77 Aligned_cols=218 Identities=25% Similarity=0.236 Sum_probs=199.7
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.++++.|++.+.+. +..|.+|.||||+|+..|+.++++.|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 49 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L 124 (285)
T 1wdy_A 49 MSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFL 124 (285)
T ss_dssp TTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHH
Confidence 58999999999998653 557888999999999999999999999999987 78899999999999999999999999
Q ss_pred HhhCCCCCccC----------CCCCCCHHHHHHHhCCHHHHHHHHHh-CCcccccccCCCChHHHHHHHcCC----HHHH
Q 041009 82 LQVIPDKCSDT----------DVDGRNPLHLAAMRGHIDVLEELARA-KPDAASARLIWGETILHLCVKHNQ----LEAL 146 (434)
Q Consensus 82 l~~~~~~~~~~----------d~~g~tpL~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v 146 (434)
++.+.+. +.. +..|.||||.|+..|+.+++++|+++ +.+. +..|..|+||||.|+..++ .+++
T Consensus 125 l~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~ 202 (285)
T 1wdy_A 125 YKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAIT 202 (285)
T ss_dssp HHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHH
T ss_pred HHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHH
Confidence 9999887 444 78899999999999999999999998 5555 7778899999999999999 8999
Q ss_pred HHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHc
Q 041009 147 KFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRA 226 (434)
Q Consensus 147 ~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~ 226 (434)
++|++.|++ ++.+|..|+||||+|+..|+.+++++|++..+.+++.+|.+|.||+|+|+. .+..+++++|+++
T Consensus 203 ~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~----~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 203 HLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKR 275 (285)
T ss_dssp HHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHH----cCcHHHHHHHHHc
Confidence 999999999 899999999999999999999999999995455999999999999999999 6778999999999
Q ss_pred CCCccc
Q 041009 227 GAISAQ 232 (434)
Q Consensus 227 g~~~~~ 232 (434)
|++...
T Consensus 276 Ga~~~~ 281 (285)
T 1wdy_A 276 GASTDC 281 (285)
T ss_dssp SSCSCC
T ss_pred CCCCCc
Confidence 998643
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.8e-34 Score=260.59 Aligned_cols=214 Identities=20% Similarity=0.222 Sum_probs=190.6
Q ss_pred CCChHHHHHHHh----cCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHH
Q 041009 2 AGSVNTLLELRQ----QDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGI 77 (434)
Q Consensus 2 ~G~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i 77 (434)
.|++++++.|++ .+.+ .+..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.++
T Consensus 19 ~g~~~~v~~Ll~~~~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~ 94 (241)
T 1k1a_A 19 QGNLPAVHRLVNLFQQGGRE---LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTC 94 (241)
T ss_dssp TTCHHHHHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCCC---CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence 689999999997 3433 3567889999999999999999999999999887 7789999999999999999999
Q ss_pred HHHHHhhCCC---CCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcC
Q 041009 78 VKALLQVIPD---KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154 (434)
Q Consensus 78 v~~Ll~~~~~---~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 154 (434)
+++|++.++. ..+..|..|.||||+|+..|+.+++++|++++++.....+..|.||||+|+++|+.+++++|+++|+
T Consensus 95 ~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 174 (241)
T 1k1a_A 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174 (241)
T ss_dssp HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999872 2377899999999999999999999999999999854443789999999999999999999999999
Q ss_pred CCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcC
Q 041009 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG 227 (434)
Q Consensus 155 ~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g 227 (434)
+ ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+. .+..++++.|.+.+
T Consensus 175 ~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~----~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 175 N---VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMVARS----RRVIDILRGKATRP 239 (241)
T ss_dssp C---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCTTTTCSS----HHHHHHHTC-----
T ss_pred C---CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC-CCCCcCCCCCCHHHHHHh----cCcHHHHhhhccCC
Confidence 9 89999999999999999999999999999988 999999999999999987 66777877776544
No 21
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.3e-35 Score=270.69 Aligned_cols=201 Identities=26% Similarity=0.319 Sum_probs=180.5
Q ss_pred ccCCCCCCHHHHHHhcCCHHHHHHHHhcCCc---hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCH
Q 041009 23 TVNCLSETPLHVAALLGHEDFAKEILRQKPR---IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP 99 (434)
Q Consensus 23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp 99 (434)
.+|.+|.||||+|+..|+.++++.|++.+.. .++..|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence 4688899999999999999999999998764 35888999999999999999999999999999887 7899999999
Q ss_pred HHHHHHhCCHHHHHHHHHhCCcc-----cccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCC-CCCcHHHHH
Q 041009 100 LHLAAMRGHIDVLEELARAKPDA-----ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDD-YGMTILHLA 173 (434)
Q Consensus 100 L~~Aa~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~LhlA 173 (434)
||+|+..|+.+++++|++++++. ....+..|.||||+|+.+|+.+++++|++.|++ ++.+|. .|+||||+|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLA 158 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCCHHHHH
Confidence 99999999999999999998642 466788899999999999999999999999999 888887 999999999
Q ss_pred HHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 174 VADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 174 ~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
+..|+.+++++|+++|+ +++.+|..|.||+|+|+. .+..+++++|.++|++...
T Consensus 159 ~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~~~ 212 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKCGA-DVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLENLQ 212 (236)
T ss_dssp HHTTCHHHHHHHHTTTC-CSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGGGS
T ss_pred HHcCCHHHHHHHHHcCC-CCCcccCCCCCHHHHHHc----cCchHHHHHHHHcchhhhh
Confidence 99999999999999988 999999999999999988 6778999999999997643
No 22
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.8e-34 Score=260.97 Aligned_cols=197 Identities=19% Similarity=0.280 Sum_probs=176.7
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhc-CCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCC----ccCCCCCCCHHH
Q 041009 27 LSETPLHVAALLGHEDFAKEILRQ-KPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC----SDTDVDGRNPLH 101 (434)
Q Consensus 27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~----~~~d~~g~tpL~ 101 (434)
.|+||||.|+..|+.++++.|++. +.++ +..|..|+||||+|+..|+.+++++|++.+++.. +..|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 489999999999999999999998 5554 8889999999999999999999999999988753 456779999999
Q ss_pred HHHHhCCHHHHHHHHHhCCcccccc------------cCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcH
Q 041009 102 LAAMRGHIDVLEELARAKPDAASAR------------LIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTI 169 (434)
Q Consensus 102 ~Aa~~g~~~~v~~Ll~~~~~~~~~~------------~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~ 169 (434)
+|+..|+.+++++|++++++..... |.+|+||||+|+.+|+.+++++|+++|++ ++.+|.+|+||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~ 157 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD---IRAQDSLGNTV 157 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCH
Confidence 9999999999999999998874322 23699999999999999999999999999 89999999999
Q ss_pred HHHHHHcCcHHHH----HHhhhcccccc------cccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 170 LHLAVADKQIEAI----KLLTTSTAIEV------NAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 170 LhlA~~~~~~~iv----~~Ll~~~~~~~------~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
||+|+..++.+++ ++|+++++ +. +.+|..|.||+|+|+. .+..+++++|+++|.....
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~-~~~~~~~~~~~~~~g~tpl~~A~~----~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG-GDHLKSLELVPNNQGLTPFKLAGV----EGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC-SCSSCCGGGCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC-chhhhhhhccCCCCCCCHHHHHHH----cCCHHHHHHHHhcCccchh
Confidence 9999999999988 99999988 65 6899999999999999 6778999999998876543
No 23
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=262.95 Aligned_cols=196 Identities=23% Similarity=0.222 Sum_probs=180.7
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR 106 (434)
Q Consensus 27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~ 106 (434)
+|.||||+||..|+.++++.|++++.++ +..|..|.||||+|+..|+.+++++|++.+++. +..|.+|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 4899999999999999999999999886 888999999999999999999999999999887 88999999999999999
Q ss_pred CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009 107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT 186 (434)
Q Consensus 107 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll 186 (434)
|+.+++++|++++++.. .+.+|.||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|+
T Consensus 80 ~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 154 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGN---IDHKISHLGTPLYLACENQQRACVKKLL 154 (261)
T ss_dssp TCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCBTTTBCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCcCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999998874 345699999999999999999999999999 8999999999999999999999999999
Q ss_pred hcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccccCC
Q 041009 187 TSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDLQ 235 (434)
Q Consensus 187 ~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~~~ 235 (434)
++|+ +++. |..|.||||+|+. .+..+++++|.+.|++......
T Consensus 155 ~~g~-~~~~-~~~g~t~Lh~A~~----~~~~~~v~~Ll~~gad~~~~d~ 197 (261)
T 2xai_A 155 ESGA-DVNQ-GKGQDSPLHAVAR----TASEELACLLMDFGADTQAKNA 197 (261)
T ss_dssp HHTC-CTTC-CBTTBCHHHHHHH----HTCHHHHHHHHHTTCCTTCCCT
T ss_pred HcCC-CCCC-CCCCCChHHHHHH----cCCHHHHHHHHHcCCCCCCcCC
Confidence 9988 8885 8999999999999 6678999999999998654433
No 24
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=9e-34 Score=251.66 Aligned_cols=194 Identities=23% Similarity=0.296 Sum_probs=180.4
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 041009 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA 104 (434)
Q Consensus 25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa 104 (434)
+..+.||||.|+..|+.+.++.|++.++..++..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG 80 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 3568999999999999999999999998556889999999999999999999999999999988 789999999999999
Q ss_pred HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhc-CCCccccCCCCCCCcHHHHHHHcCc-----
Q 041009 105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENM-GDSELLNAKDDYGMTILHLAVADKQ----- 178 (434)
Q Consensus 105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~~~d~~g~t~LhlA~~~~~----- 178 (434)
..|+.+++++|++.+.......+..|.||||+|+.+|+.+++++|++.| .+ ++.+|..|+||||+|+..++
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC---TTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCCCCHHHHHHHhccchhhH
Confidence 9999999999997766556788899999999999999999999999999 66 89999999999999999987
Q ss_pred HHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcC
Q 041009 179 IEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG 227 (434)
Q Consensus 179 ~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g 227 (434)
.+++++|+++|+ +++.+|..|.||+|+|+. .+..+++++|.++|
T Consensus 158 ~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 158 QDIVKLLMENGA-DQSIKDNSGRTAMDYANQ----KGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTCC
T ss_pred HHHHHHHHHCCC-CCCccCCCCCCHHHHHHH----cCCHhHHHHHHhcC
Confidence 999999999988 999999999999999999 67789999999876
No 25
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4e-34 Score=277.98 Aligned_cols=216 Identities=17% Similarity=0.143 Sum_probs=196.0
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|++++++.|++.+.+ .+..|..|.||||+||..|+.+++++|++++++. .+..|.||||+|+..|+.+++++|
T Consensus 30 ~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g~~~~v~~L 103 (364)
T 3ljn_A 30 KGQTDEVRRLIETGVS---PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVAL 103 (364)
T ss_dssp HTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCC---ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcCCHHHHHHH
Confidence 5899999999999855 3667899999999999999999999999999954 345899999999999999999999
Q ss_pred Hhh----CCCCCcc-----------------CCCCCCCHHHHHHHhC--CHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 041009 82 LQV----IPDKCSD-----------------TDVDGRNPLHLAAMRG--HIDVLEELARAKPDAASARLIWGETILHLCV 138 (434)
Q Consensus 82 l~~----~~~~~~~-----------------~d~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~ 138 (434)
++. +.+. +. .|..|.||||+|+..| +.+++++|++++.++ +..|..|+||||+|+
T Consensus 104 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~ 181 (364)
T 3ljn_A 104 VEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAM 181 (364)
T ss_dssp HHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHH
T ss_pred HHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 998 6655 33 7889999999999999 999999999999887 677889999999999
Q ss_pred HcCCHHHHHHHHHhcCCCc--cccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCch
Q 041009 139 KHNQLEALKFLLENMGDSE--LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKD 216 (434)
Q Consensus 139 ~~g~~~~v~~Ll~~~~~~~--~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~ 216 (434)
.+|+.+++++|++.|++.. .++.+|..|+||||+|+..|+.+++++|+++|+ +++..|.+|.||||+|+. .+.
T Consensus 182 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~----~g~ 256 (364)
T 3ljn_A 182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI-DVNMEDNEHTVPLYLSVR----AAM 256 (364)
T ss_dssp HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC-CTTCCCTTSCCHHHHHHH----TCC
T ss_pred HcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHH----hCh
Confidence 9999999999999987621 267889999999999999999999999999988 999999999999999999 778
Q ss_pred hHHHHHHHHcCCCc
Q 041009 217 WDIGELLRRAGAIS 230 (434)
Q Consensus 217 ~~i~~~L~~~g~~~ 230 (434)
.+++++|++.|+..
T Consensus 257 ~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 257 VLLTKELLQKTDVF 270 (364)
T ss_dssp HHHHHHHHHHSCHH
T ss_pred HHHHHHHHHcCCch
Confidence 99999999998764
No 26
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-33 Score=280.29 Aligned_cols=218 Identities=28% Similarity=0.312 Sum_probs=161.6
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.++++.|++.+.+. +..+..|.||||+|+..|+.+++++|++++.+. +..+..|.||||+|+..|+.+++++|
T Consensus 156 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 156 YGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp TTCHHHHHHHHHTTCCT---TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 35666666666665432 445566667777777777777777777766665 55566677777777777777777777
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 161 (434)
++.+.+. +..+..|.||||+|+..|+.+++++|++++++. +..+..|.||||+|++.|+.+++++|+++|.+ ++.
T Consensus 232 l~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~ 306 (437)
T 1n11_A 232 LQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDA 306 (437)
T ss_dssp HHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTC
T ss_pred HHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc---CCC
Confidence 7776665 566777777777777777777777777777766 55567788888888888888888888888777 777
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009 162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD 233 (434)
Q Consensus 162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~ 233 (434)
+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+. .+..+++++|+++|++....
T Consensus 307 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-d~n~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPNEV 373 (437)
T ss_dssp CCSSCCCHHHHHHHSSCSHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCCC
T ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHH----CChHHHHHHHHHCcCCCCCC
Confidence 88888888888888888888888888877 888888888888888887 56678888888888876543
No 27
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.9e-33 Score=270.22 Aligned_cols=219 Identities=26% Similarity=0.264 Sum_probs=191.0
Q ss_pred CCChHHHHHHHhcCCCcccccccC-CCCCCHHHHHHhcCCHHHHHHHHhcCCch--------------------------
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVN-CLSETPLHVAALLGHEDFAKEILRQKPRI-------------------------- 54 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~-------------------------- 54 (434)
+||+++|+.||+.+.++ +.++ ..|.||||+||..|+.++|+.|+++|+++
T Consensus 35 ~g~~~~V~~LL~~Gadv---n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (337)
T 4g8k_A 35 NEDVDLVQQLLEGGANV---NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF 111 (337)
T ss_dssp TTCHHHHHHHHHHTCCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC---CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHh
Confidence 69999999999999664 4444 45999999999999999999999988753
Q ss_pred ------hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCC---------ccCCCCCCCHHHHHHHhCCHHHHHHHHHh-
Q 041009 55 ------AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC---------SDTDVDGRNPLHLAAMRGHIDVLEELARA- 118 (434)
Q Consensus 55 ------~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~- 118 (434)
++..|..|.||||+|+..|+.+++++|++.+++.. ...+..|.||||+|+..|+.+++++|+++
T Consensus 112 ~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ 191 (337)
T 4g8k_A 112 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 191 (337)
T ss_dssp HTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHS
T ss_pred hhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhcc
Confidence 35568899999999999999999999999988752 12456789999999999999999999975
Q ss_pred CCcccccccCCCChHHHHHHHcCC----HHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccccc
Q 041009 119 KPDAASARLIWGETILHLCVKHNQ----LEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVN 194 (434)
Q Consensus 119 ~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~ 194 (434)
+.++ +..|..|.|++|.++..+. .+++++|+++|++ ++.+|.+|+||||+|+..|+.++++.|++.++.+++
T Consensus 192 gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad---~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn 267 (337)
T 4g8k_A 192 GADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 267 (337)
T ss_dssp CCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC---TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT
T ss_pred CCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc
Confidence 5555 7778899999998876554 4588999999999 899999999999999999999999999998777999
Q ss_pred ccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcc
Q 041009 195 AVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISA 231 (434)
Q Consensus 195 ~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~ 231 (434)
.+|.+|+||||+|+. .+..+++++|+++|++..
T Consensus 268 ~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 268 DTDSDGKTALLLAVE----LKLKKIAELLCKRGASTD 300 (337)
T ss_dssp CBCTTSCBHHHHHHH----TTCHHHHHHHHTTSCSST
T ss_pred CcCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence 999999999999999 677899999999998763
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.5e-33 Score=254.33 Aligned_cols=198 Identities=28% Similarity=0.317 Sum_probs=186.5
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 041009 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA 104 (434)
Q Consensus 25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa 104 (434)
+..+++|||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAA 81 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHH
Confidence 3458899999999999999999999998888889999999999999999999999999999887 789999999999999
Q ss_pred HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009 105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL 184 (434)
Q Consensus 105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~ 184 (434)
..|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|++.|.+ ++.+|..|.||||+|+..|+.+++++
T Consensus 82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~ 157 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHI 157 (231)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 999999999999999887 66788899999999999999999999999998 88999999999999999999999999
Q ss_pred hhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 185 LTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 185 Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
|++++. +++.+|..|.||+|+|+. .+..+++++|++.|++...
T Consensus 158 Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 158 LLFYKA-STNIQDTEGNTPLHLACD----EERVEEAKFLVTQGASIYI 200 (231)
T ss_dssp HHHTTC-CSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred HHhcCC-CccccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCCCC
Confidence 999988 999999999999999999 6778999999999988643
No 29
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.7e-34 Score=268.90 Aligned_cols=212 Identities=16% Similarity=0.112 Sum_probs=189.8
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
+++.+.+..++..+. .+..|.+|.||||+|+..|+.++++.|+++++++ +.. +|.||||+|+..|+.+++++|
T Consensus 9 ~~~~~~v~~lL~~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 9 TWKSKQLKSFLSSKD----TFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GCCHHHHHHHHHSTT----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred hcCHHHHHHHHHhCC----CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHH
Confidence 356677777776652 3567899999999999999999999999999887 444 499999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCC-ChHHHHHHHcCCHHHHHHHHHhcCCCcccc
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWG-ETILHLCVKHNQLEALKFLLENMGDSELLN 160 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 160 (434)
++.++++ +.+|..|.||||+|+..|+.+++++|+++++++ ...+..| .||||+|+.+|+.+++++|+++|++ .
T Consensus 82 l~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~---~- 155 (285)
T 3kea_A 82 LFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---T- 155 (285)
T ss_dssp HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT---T-
T ss_pred HHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc---c-
Confidence 9999987 789999999999999999999999999999987 6677778 8999999999999999999999887 2
Q ss_pred CCCC-CCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCH-HHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 161 AKDD-YGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTA-WDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 161 ~~d~-~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~-l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
.|. .|+||||+|+..|+.+++++|+++|+ +++.+|..|.|| +|+|+. .+..+++++|+++|++...
T Consensus 156 -~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-d~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 156 -FDLAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDINIYS 223 (285)
T ss_dssp -CCCSTHHHHHHHHHHTTCHHHHHHHHHHHH-HTCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCBCSTT
T ss_pred -ccccCCccHHHHHHHcChHHHHHHHHHcCC-CCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence 233 89999999999999999999999988 999999999998 999999 6678999999999998654
No 30
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-34 Score=271.43 Aligned_cols=199 Identities=26% Similarity=0.319 Sum_probs=145.8
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+++.++.|++.+.++ +..|..|.||||+||..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 50 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~L 125 (299)
T 1s70_B 50 SGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYL 125 (299)
T ss_dssp HTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence 47777777777777543 456677778888888777888888887777776 66677777888888777777788877
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcc--------------------------cccccCCCChHHH
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDA--------------------------ASARLIWGETILH 135 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~--------------------------~~~~~~~g~t~Lh 135 (434)
++++++. +..|..|.||||+|+..|+.++++.++...... ....+..|.||||
T Consensus 126 l~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~ 204 (299)
T 1s70_B 126 ISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH 204 (299)
T ss_dssp HHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH
T ss_pred HhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHH
Confidence 7777766 667777778888777777777777665432211 1223456777888
Q ss_pred HHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009 136 LCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ 209 (434)
Q Consensus 136 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~ 209 (434)
+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..|+||+|+|.+
T Consensus 205 ~A~~~g~~~~v~~Ll~~g~d---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 205 VAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp HHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCTTTSCCS
T ss_pred HHHHCCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH
Confidence 88888888888888877777 67777778888888888888888888877776 777777788888877743
No 31
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.3e-34 Score=279.70 Aligned_cols=216 Identities=20% Similarity=0.281 Sum_probs=192.6
Q ss_pred CCChHHHHHHH--------hcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcC
Q 041009 2 AGSVNTLLELR--------QQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKG 73 (434)
Q Consensus 2 ~G~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 73 (434)
.|+.++++.|+ +.+.+ .+..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|
T Consensus 135 ~g~~~~v~~Ll~~~~~~ll~~ga~---vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g 210 (373)
T 2fo1_E 135 NSSAEKSEDLIVHEAKECIAAGAD---VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANR 210 (373)
T ss_dssp TTCCSCCTTHHHHHHHHHHHTCCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCC---CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCC
Confidence 46666666655 66644 3667899999999999999999999999999987 788999999999999999
Q ss_pred CHHHHHHHHhhC---CCCCccCCCCCCCHHHHHHHhC---CHHHHHHHHHhCCcccc-------cccCCCChHHHHHHHc
Q 041009 74 YVGIVKALLQVI---PDKCSDTDVDGRNPLHLAAMRG---HIDVLEELARAKPDAAS-------ARLIWGETILHLCVKH 140 (434)
Q Consensus 74 ~~~iv~~Ll~~~---~~~~~~~d~~g~tpL~~Aa~~g---~~~~v~~Ll~~~~~~~~-------~~~~~g~t~Lh~A~~~ 140 (434)
+.+++++|++.+ .+. +..|..|.||||+|+..| +.+++++|++++++... ..|..|.||||+|+.+
T Consensus 211 ~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~ 289 (373)
T 2fo1_E 211 DFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289 (373)
T ss_dssp CHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSS
T ss_pred CHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHh
Confidence 999999999987 455 778999999999999998 89999999999988743 3567899999999999
Q ss_pred CCHHHHHHHHHhc-CCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHH
Q 041009 141 NQLEALKFLLENM-GDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDI 219 (434)
Q Consensus 141 g~~~~v~~Ll~~~-~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i 219 (434)
|+.+++++|++.+ ++ ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+. .++.++
T Consensus 290 g~~~~v~~Ll~~~~~~---~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-d~~~~d~~g~t~l~~A~~----~g~~~i 361 (373)
T 2fo1_E 290 SNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-SVEAVDATDHTARQLAQA----NNHHNI 361 (373)
T ss_dssp CCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSSCCCSSSCCHHHHHHH----TTCHHH
T ss_pred CCHHHHHHHHHhcCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccCCCCCCCCHHHHHHH----cCCHHH
Confidence 9999999999987 77 89999999999999999999999999999988 999999999999999999 778999
Q ss_pred HHHHHHcCCCc
Q 041009 220 GELLRRAGAIS 230 (434)
Q Consensus 220 ~~~L~~~g~~~ 230 (434)
+++|.++|++.
T Consensus 362 v~~Ll~~~a~~ 372 (373)
T 2fo1_E 362 VDIFDRCRPER 372 (373)
T ss_dssp HHHHHTTC---
T ss_pred HHHHHhcCccc
Confidence 99999988753
No 32
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.8e-33 Score=275.09 Aligned_cols=218 Identities=28% Similarity=0.398 Sum_probs=201.6
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+++++++|++.+.+. +..|..|.||||+||..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 24 ~g~~~~v~~Ll~~g~~~---~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~L 99 (437)
T 1n11_A 24 MGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLL 99 (437)
T ss_dssp HTCHHHHHHHHHTTCCS---CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 48999999999998553 567888999999999999999999999999987 78899999999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 161 (434)
+++++++ +..|..|.||||+|+..|+.++++.|++++.+. ...+..|.||||+|+.+|+.+++++|+++|++ ++.
T Consensus 100 l~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~ 174 (437)
T 1n11_A 100 LENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNA 174 (437)
T ss_dssp HHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTC
T ss_pred HhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCC
Confidence 9999987 789999999999999999999999999998876 56678899999999999999999999999998 889
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009 162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD 233 (434)
Q Consensus 162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~ 233 (434)
.|..|.||||+|+..++.+++++|++++. +++..+.+|.||+|+|+. .+..+++++|.+.|+.....
T Consensus 175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~~~ 241 (437)
T 1n11_A 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAK----QNQVEVARSLLQYGGSANAE 241 (437)
T ss_dssp CCSSCCCHHHHHHHTTCHHHHHHHGGGTC-CSCCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999988 899999999999999999 67789999999999875543
No 33
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.3e-32 Score=264.99 Aligned_cols=211 Identities=21% Similarity=0.243 Sum_probs=189.0
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 68 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 143 (351)
T 3utm_A 68 YNRVRIVQLLLQHGADV---HAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLL 143 (351)
T ss_dssp TTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 58999999999998653 667889999999999999999999999999987 78899999999999999999999999
Q ss_pred HhhCCCCCcc------------------------------------------------------CCCCCCCHHHHHHHh-
Q 041009 82 LQVIPDKCSD------------------------------------------------------TDVDGRNPLHLAAMR- 106 (434)
Q Consensus 82 l~~~~~~~~~------------------------------------------------------~d~~g~tpL~~Aa~~- 106 (434)
++++++. +. .+..|.||||+|+..
T Consensus 144 l~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~ 222 (351)
T 3utm_A 144 LSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL 222 (351)
T ss_dssp HHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCC
T ss_pred HHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHh
Confidence 9998875 32 345678999999999
Q ss_pred --CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009 107 --GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL 184 (434)
Q Consensus 107 --g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~ 184 (434)
+..+++++|++++.+. +.+|.+|+||||+|+++|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++
T Consensus 223 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~A~~~~~~~~v~~ 298 (351)
T 3utm_A 223 HPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRL 298 (351)
T ss_dssp STTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 5589999999999987 67788999999999999999999999999999 89999999999999999999999999
Q ss_pred hhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009 185 LTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS 230 (434)
Q Consensus 185 Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~ 230 (434)
|+++|+ +++.+|..|.||+|+|. .++.++|.+.+...
T Consensus 299 Ll~~ga-d~~~~~~~g~tal~~a~--------~~~~~~l~~~~~~~ 335 (351)
T 3utm_A 299 LLSYGS-DPSIISLQGFTAAQMGN--------EAVQQILSESTPMR 335 (351)
T ss_dssp HHHTTC-CTTCCCTTSCCHHHHSC--------HHHHHHHHHC----
T ss_pred HHHcCC-CCCCcCCCCCChhhhhh--------HHHHHHHHhccccc
Confidence 999988 99999999999999874 36778888766543
No 34
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=9.5e-34 Score=261.56 Aligned_cols=196 Identities=22% Similarity=0.252 Sum_probs=175.0
Q ss_pred CCCCHHHHHHhcCCHH----HHHHHHhcCCchhhc----cCCCCCcHHHHHHHc---CCHHHHHHHHhhCCCCCc-----
Q 041009 27 LSETPLHVAALLGHED----FAKEILRQKPRIAEE----LDSRKSSALHIASQK---GYVGIVKALLQVIPDKCS----- 90 (434)
Q Consensus 27 ~g~t~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~----~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~----- 90 (434)
+|+||||.||..|+.+ ++++|++.+.++ +. .|..|+||||+|+.. |+.+++++|++.+++...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 4889999999999997 567777788887 55 799999999999999 999999999999776521
Q ss_pred -----cCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCC-------------CChHHHHHHHcCCHHHHHHHHH-
Q 041009 91 -----DTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIW-------------GETILHLCVKHNQLEALKFLLE- 151 (434)
Q Consensus 91 -----~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~Lh~A~~~g~~~~v~~Ll~- 151 (434)
..|..|.||||+|+..|+.+++++|+++++++ +..+.. |+||||+|+.+|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 23578999999999999999999999999987 444544 9999999999999999999999
Q ss_pred --hcCCCccccCCCCCCCcHHHHHHH--cCcHH-------HHHHhhhcccccc-------cccccCCCCHHHHHHHccCC
Q 041009 152 --NMGDSELLNAKDDYGMTILHLAVA--DKQIE-------AIKLLTTSTAIEV-------NAVTANGFTAWDILAQSKRD 213 (434)
Q Consensus 152 --~~~~~~~~~~~d~~g~t~LhlA~~--~~~~~-------iv~~Ll~~~~~~~-------~~~n~~g~t~l~la~~~~~~ 213 (434)
.|++ ++.+|.+|+||||+|+. .++.+ ++++|+++|+ ++ +.+|.+|.||+|+|+.
T Consensus 159 ~~~ga~---~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga-~~~~~~~~~~~~d~~g~tpL~~A~~---- 230 (256)
T 2etb_A 159 PHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA-RLCPTVQLEEISNHQGLTPLKLAAK---- 230 (256)
T ss_dssp SSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH-HHSTTCCGGGCCCTTSCCHHHHHHH----
T ss_pred cccCCC---cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC-CcccccccccccCCCCCCHHHHHHH----
Confidence 8998 89999999999999999 78888 9999999988 88 9999999999999999
Q ss_pred CchhHHHHHHHHcCCCccc
Q 041009 214 TKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 214 ~~~~~i~~~L~~~g~~~~~ 232 (434)
.+..+++++|+++|.....
T Consensus 231 ~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 231 EGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhCCCCCCC
Confidence 7778999999999877543
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.9e-33 Score=261.94 Aligned_cols=223 Identities=22% Similarity=0.177 Sum_probs=191.0
Q ss_pred CChHHHHHHHhcCCCccc------ccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHH
Q 041009 3 GSVNTLLELRQQDPLIVE------RPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVG 76 (434)
Q Consensus 3 G~~~~v~~Ll~~~~~~~~------~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~ 76 (434)
|..+.++.++........ ....+..|.||||.||..|+.++++.|+++++++ +..|..|.||||+|+..|+.+
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~ 87 (299)
T 1s70_B 9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVD 87 (299)
T ss_dssp HHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHH
T ss_pred HHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHH
Confidence 445677777776543211 1123446789999999999999999999999987 788999999999999999999
Q ss_pred HHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcC-C
Q 041009 77 IVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG-D 155 (434)
Q Consensus 77 iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~ 155 (434)
++++|++.++++ +..|..|.||||+|+..|+.+++++|+++++++ ...+.+|.||||+|+..++.++++.++.... +
T Consensus 88 ~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~ 165 (299)
T 1s70_B 88 MVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165 (299)
T ss_dssp HHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCC
Confidence 999999999987 789999999999999999999999999999987 6678899999999999999999988775432 2
Q ss_pred C-----------------------ccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccC
Q 041009 156 S-----------------------ELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKR 212 (434)
Q Consensus 156 ~-----------------------~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~ 212 (434)
. ......+..|.||||+|+..|+.+++++|+++|. +++.+|.+|.||||+|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-d~~~~d~~g~tpL~~A~~--- 241 (299)
T 1s70_B 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAH--- 241 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHH---
T ss_pred chhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHh---
Confidence 0 0123467789999999999999999999999987 999999999999999999
Q ss_pred CCchhHHHHHHHHcCCCcccc
Q 041009 213 DTKDWDIGELLRRAGAISAQD 233 (434)
Q Consensus 213 ~~~~~~i~~~L~~~g~~~~~~ 233 (434)
.+..+++++|+++|++....
T Consensus 242 -~~~~~~v~~Ll~~gad~~~~ 261 (299)
T 1s70_B 242 -WGKEEACRILVENLCDMEAV 261 (299)
T ss_dssp -TTCHHHHHHHHHTTCCTTCC
T ss_pred -cCCHHHHHHHHHcCCCCCCc
Confidence 67789999999999986543
No 36
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.4e-32 Score=234.88 Aligned_cols=158 Identities=32% Similarity=0.400 Sum_probs=144.5
Q ss_pred CHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH
Q 041009 30 TPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI 109 (434)
Q Consensus 30 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~ 109 (434)
++|+.||..|+.++|+.|+++|+++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence 4799999999999999999999987 888999999999999999999999999999987 78999999999999999999
Q ss_pred HHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcc
Q 041009 110 DVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189 (434)
Q Consensus 110 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~ 189 (434)
+++++|+++++++ +.+|.+|+||||+|+++|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus 84 ~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 84 EVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 9999999999987 67788999999999999999999999999999 8899999999999999999999999999999
Q ss_pred ccccc
Q 041009 190 AIEVN 194 (434)
Q Consensus 190 ~~~~~ 194 (434)
+ +++
T Consensus 160 A-~ie 163 (169)
T 4gpm_A 160 G-WLE 163 (169)
T ss_dssp -----
T ss_pred C-CcC
Confidence 8 554
No 37
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1e-32 Score=267.97 Aligned_cols=201 Identities=23% Similarity=0.239 Sum_probs=181.4
Q ss_pred cccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCH
Q 041009 20 ERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNP 99 (434)
Q Consensus 20 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp 99 (434)
+.+..|..|.||||+||..|+.++|++|++++.++ +..|..|.||||+|+..|+.+++++|++.+++. .+.+|.||
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~ 87 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKP 87 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCH
Confidence 34556788999999999999999999999999887 888999999999999999999999999999854 44689999
Q ss_pred HHHHHHhCCHHHHHHHHHh----CCcccc----------------cccCCCChHHHHHHHcC--CHHHHHHHHHhcCCCc
Q 041009 100 LHLAAMRGHIDVLEELARA----KPDAAS----------------ARLIWGETILHLCVKHN--QLEALKFLLENMGDSE 157 (434)
Q Consensus 100 L~~Aa~~g~~~~v~~Ll~~----~~~~~~----------------~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~ 157 (434)
||+|+..|+.+++++|++. +.+... ..|..|.||||+|+..| +.+++++|++.|++
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-- 165 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-- 165 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC--
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC--
Confidence 9999999999999999998 665522 16778999999999999 99999999999999
Q ss_pred cccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccc-----ccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 158 LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIE-----VNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 158 ~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~-----~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
++.+|..|+||||+|+..|+.+++++|+++++ + ++..|..|.||||+|+. .+..+++++|+++|++...
T Consensus 166 -~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 166 -PTAKDKADETPLMRAMEFRNREALDLMMDTVP-SKSSLRLDYANKQGNSHLHWAIL----INWEDVAMRFVEMGIDVNM 239 (364)
T ss_dssp -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS-CSSSCCTTCCCTTCCCTTHHHHT----TTCHHHHHHHHTTTCCTTC
T ss_pred -CcccCCCCCCHHHHHHHcCCHHHHHHHHhccc-ccccccccccCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999999887 6 99999999999999998 7778999999999988644
No 38
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=256.24 Aligned_cols=201 Identities=24% Similarity=0.195 Sum_probs=158.4
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcCCch-------hhccCCCCCcHHHHHHHcCCH-HHHHHHHhhCCCCCccCCCC
Q 041009 24 VNCLSETPLHVAALLGHEDFAKEILRQKPRI-------AEELDSRKSSALHIASQKGYV-GIVKALLQVIPDKCSDTDVD 95 (434)
Q Consensus 24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~tpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~d~~ 95 (434)
.|..+.+||+.||..|+.++|+.|++.+++. .+..|..|.||||.|+..++. ++++.|++.|.++ +.+|.+
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~ 85 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQD 85 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCC
Confidence 4666789999999999999999999988753 355678899999999988875 5889999999987 889999
Q ss_pred CCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHH
Q 041009 96 GRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA 175 (434)
Q Consensus 96 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~ 175 (434)
|+||||+|+..|+.+++++|++.+++. ...+.+|.||+|.|+..++.+++++|++.|++ ++.+|.+|+||||+|+.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~---~n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK---PNKKDLSGNTPLIYACS 161 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999987 66788899999999999999999999999999 89999999999999999
Q ss_pred cCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccccC
Q 041009 176 DKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQDL 234 (434)
Q Consensus 176 ~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~~ 234 (434)
.|+.+++++|+++|+ ++|..|..|.||||+|+. .+..+++++|+++|++.....
T Consensus 162 ~g~~~~v~~Ll~~ga-dvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 162 GGHHELVALLLQHGA-SINASNNKGNTALHEAVI----EKHVFVVELLLLHGASVQVLN 215 (269)
T ss_dssp TTCGGGHHHHHHTTC-CTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCSCCCC
T ss_pred CCCHHHHHHHHHCCC-CCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCCCCcC
Confidence 999999999999988 999999999999999999 777899999999999865443
No 39
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=7.5e-33 Score=258.10 Aligned_cols=199 Identities=21% Similarity=0.255 Sum_probs=172.6
Q ss_pred cccCCCCCCHHHHHHhcCCHHHHHHHHhc----CCchhh---ccCCCCCcHHHHHHHc---CCHHHHHHHHhhCCCCC--
Q 041009 22 PTVNCLSETPLHVAALLGHEDFAKEILRQ----KPRIAE---ELDSRKSSALHIASQK---GYVGIVKALLQVIPDKC-- 89 (434)
Q Consensus 22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~----~~~~~~---~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~-- 89 (434)
+..|.+|.||||.||..|+.++|+.|++. +.++.. ..|..|+||||+|+.. |+.+++++|++.+++..
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 44688899999999999999999999874 443321 4588999999999987 99999999999875421
Q ss_pred --------ccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccC--------------CCChHHHHHHHcCCHHHHH
Q 041009 90 --------SDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI--------------WGETILHLCVKHNQLEALK 147 (434)
Q Consensus 90 --------~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~Lh~A~~~g~~~~v~ 147 (434)
...|..|.||||+|+..|+.+++++|+++++++ +..+. .|+||||+|+.+|+.++++
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 225678999999999999999999999999987 44454 7999999999999999999
Q ss_pred HHHH---hcCCCccccCCCCCCCcHHHHHHHcCc---------HHHHHHhhhccccccc-------ccccCCCCHHHHHH
Q 041009 148 FLLE---NMGDSELLNAKDDYGMTILHLAVADKQ---------IEAIKLLTTSTAIEVN-------AVTANGFTAWDILA 208 (434)
Q Consensus 148 ~Ll~---~~~~~~~~~~~d~~g~t~LhlA~~~~~---------~~iv~~Ll~~~~~~~~-------~~n~~g~t~l~la~ 208 (434)
+|++ .|++ ++.+|.+|+||||+|+..|+ .+++++|+++|+ +++ .+|.+|.||||+|+
T Consensus 166 ~Ll~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga-~~n~~~~~~~~~d~~g~TpL~~A~ 241 (273)
T 2pnn_A 166 FLLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA-KLHPTLKLEEITNRKGLTPLALAA 241 (273)
T ss_dssp HHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH-HHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHhcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh-hcccccccccccCCCCCCHHHHHH
Confidence 9999 8888 89999999999999999888 799999999988 886 58999999999999
Q ss_pred HccCCCchhHHHHHHHHcCCC
Q 041009 209 QSKRDTKDWDIGELLRRAGAI 229 (434)
Q Consensus 209 ~~~~~~~~~~i~~~L~~~g~~ 229 (434)
. .+..+++++|+++|+.
T Consensus 242 ~----~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 242 S----SGKIGVLAYILQREIH 258 (273)
T ss_dssp H----TTCHHHHHHHHHHHTC
T ss_pred H----hChHHHHHHHHHCCCC
Confidence 9 7779999999999995
No 40
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=2.5e-31 Score=235.88 Aligned_cols=182 Identities=24% Similarity=0.258 Sum_probs=168.0
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.+.++.|+++++.. .+..|.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 15 ~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L 91 (201)
T 3hra_A 15 QRDTKKVKEILQDTTYQ--VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYM 91 (201)
T ss_dssp TTCHHHHHHHHTCTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHcCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 68999999999988732 3567889999999999999999999999999987 78899999999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCC-----HHHHHHHHHhcCCC
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQ-----LEALKFLLENMGDS 156 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~~~ 156 (434)
++.++...+..|..|.||||+|+..|+.+++++|+++++...+..|..|+||||+|+..++ .+++++|++.|++
T Consensus 92 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~- 170 (201)
T 3hra_A 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD- 170 (201)
T ss_dssp HHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-
T ss_pred HhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-
Confidence 9776655588999999999999999999999999999955557889999999999999998 9999999999999
Q ss_pred ccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcc
Q 041009 157 ELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189 (434)
Q Consensus 157 ~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~ 189 (434)
++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus 171 --~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 171 --QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp --TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred --CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 8899999999999999999999999999875
No 41
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.98 E-value=2.5e-32 Score=256.42 Aligned_cols=207 Identities=18% Similarity=0.212 Sum_probs=186.0
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.++++.|++.+.++ +.. +|.||||+|+..|+.++++.|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus 41 ~g~~~~v~~Ll~~g~~~---~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~L 114 (285)
T 3kea_A 41 DNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLF 114 (285)
T ss_dssp TTCHHHHHHHHHTTGGG---SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCC---CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 68999999999998653 333 4999999999999999999999999997 78899999999999999999999999
Q ss_pred HhhCCCCCccCCCCC-CCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCcccc
Q 041009 82 LQVIPDKCSDTDVDG-RNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLN 160 (434)
Q Consensus 82 l~~~~~~~~~~d~~g-~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 160 (434)
++.++++ +..|..| .||||+|+..|+.+++++|++++++.... ..|.||||+|+.+|+.+++++|+++|++ ++
T Consensus 115 l~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad---~n 188 (285)
T 3kea_A 115 VKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTS---TN 188 (285)
T ss_dssp HHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--STHHHHHHHHHHTTCHHHHHHHHHHHHH---TC
T ss_pred HhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--cCCccHHHHHHHcChHHHHHHHHHcCCC---CC
Confidence 9999987 7889999 79999999999999999999999876222 2799999999999999999999999999 89
Q ss_pred CCCCCCCcH-HHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 161 AKDDYGMTI-LHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 161 ~~d~~g~t~-LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
.+|..|+|| ||+|+..|+.+++++|+++|+ +++..|.. ++. .+..+++++|+++|++...
T Consensus 189 ~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga-d~~~~~~~-------a~~----~~~~~iv~~Ll~~g~~~~~ 249 (285)
T 3kea_A 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-NIYSANLE-------NVL----LDDAEIAKMIIEKHVEYKS 249 (285)
T ss_dssp TTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB-CSTTTTGG-------GGT----TTCHHHHHHHHHHHHHHTT
T ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCChh-------hhh----cCCHHHHHHHHHcCCCCCC
Confidence 999999998 999999999999999999988 99988842 233 5678999999999987543
No 42
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.98 E-value=3.9e-32 Score=264.98 Aligned_cols=204 Identities=18% Similarity=0.201 Sum_probs=182.2
Q ss_pred cccC-CCCCCHHHHHHhcCCHHHHHHHH--------hcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccC
Q 041009 22 PTVN-CLSETPLHVAALLGHEDFAKEIL--------RQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDT 92 (434)
Q Consensus 22 ~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~ 92 (434)
+..| .+|.||||+||..|+.++++.|+ +.+.++ +..|..|.||||+|+..|+.+++++|++.++++ +..
T Consensus 118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~ 195 (373)
T 2fo1_E 118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIY 195 (373)
T ss_dssp TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCC
T ss_pred cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-ccc
Confidence 3345 67999999999999998888776 678776 888999999999999999999999999999988 789
Q ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHhC---CcccccccCCCChHHHHHHHcC---CHHHHHHHHHhcCCCcc-----ccC
Q 041009 93 DVDGRNPLHLAAMRGHIDVLEELARAK---PDAASARLIWGETILHLCVKHN---QLEALKFLLENMGDSEL-----LNA 161 (434)
Q Consensus 93 d~~g~tpL~~Aa~~g~~~~v~~Ll~~~---~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~-----~~~ 161 (434)
|..|.||||+|+..|+.+++++|++++ .+. ...|.+|.||||+|+..+ +.+++++|++.|++.+. .+.
T Consensus 196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~ 274 (373)
T 2fo1_E 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274 (373)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCc
Confidence 999999999999999999999999976 344 667889999999999998 89999999999998332 223
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 162 KDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
+|..|+||||+|+..|+.+++++|+++++.+++.+|.+|.||||+|+. .+..+++++|+++|++...
T Consensus 275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~~ 341 (373)
T 2fo1_E 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ----EGRIEVVMYLIQQGASVEA 341 (373)
T ss_dssp SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSC
T ss_pred ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCccC
Confidence 788999999999999999999999999866999999999999999999 6678999999999998644
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=3.2e-31 Score=240.71 Aligned_cols=185 Identities=25% Similarity=0.307 Sum_probs=165.0
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchh----hccCCCCCcHHHHHHHcCCHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIA----EELDSRKSSALHIASQKGYVGI 77 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~g~tpLh~Aa~~g~~~i 77 (434)
.|+.+.++.|++... .+.+..|.+|.||||+|+..|+.++++.|++.+++.. +..|..|.||||+|+..|+.++
T Consensus 13 ~g~~~~v~~Ll~~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 90 (232)
T 2rfa_A 13 ENDVQALSKLLKFEG--CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNL 90 (232)
T ss_dssp TTCHHHHHHHHTTTC--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHhcC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHH
Confidence 689999999999832 2346678999999999999999999999999998863 4557799999999999999999
Q ss_pred HHHHHhhCCCCCccCCC-------------CCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHH
Q 041009 78 VKALLQVIPDKCSDTDV-------------DGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLE 144 (434)
Q Consensus 78 v~~Ll~~~~~~~~~~d~-------------~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~ 144 (434)
+++|++.+++. +..+. .|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.+|+.+
T Consensus 91 v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~ 168 (232)
T 2rfa_A 91 VRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKT 168 (232)
T ss_dssp HHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHH
T ss_pred HHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChH
Confidence 99999999887 45544 7999999999999999999999999987 677899999999999999999
Q ss_pred HH----HHHHHhcCCCc---cccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009 145 AL----KFLLENMGDSE---LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190 (434)
Q Consensus 145 ~v----~~Ll~~~~~~~---~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~ 190 (434)
++ ++|++.|++.. +.+.+|.+|+||||+|+..|+.+++++|++++.
T Consensus 169 ~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 88 99999998732 226899999999999999999999999999987
No 44
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.98 E-value=3.6e-31 Score=240.88 Aligned_cols=202 Identities=21% Similarity=0.209 Sum_probs=185.5
Q ss_pred cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHH
Q 041009 22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLH 101 (434)
Q Consensus 22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~ 101 (434)
+..|.+|.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.+++.....+..|.||||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 456888999999999999999999999999886 7889999999999999999999999999999886677777999999
Q ss_pred HHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCc-HH
Q 041009 102 LAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQ-IE 180 (434)
Q Consensus 102 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~-~~ 180 (434)
+|+..|+.+++++|++.+.+. ...+..|.||||.|+.+|+.+++++|++.|++ ++.+|..|.||||+|+..++ .+
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCSST
T ss_pred HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHhCChHH
Confidence 999999999999999998887 66788899999999999999999999999998 88999999999999996665 88
Q ss_pred HHHHhhhccccccccccc-CCCCHHHHHHHccCCCchhHHHHHHHHcCCCcccc
Q 041009 181 AIKLLTTSTAIEVNAVTA-NGFTAWDILAQSKRDTKDWDIGELLRRAGAISAQD 233 (434)
Q Consensus 181 iv~~Ll~~~~~~~~~~n~-~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~~ 233 (434)
++++|++.+. +++..+. .|.||||+|+. .+..+++++|.+.|++....
T Consensus 158 ~~~~L~~~~~-~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~~ 206 (240)
T 3eu9_A 158 PTRLLLTFNV-SVNLGDKYHKNTALHWAVL----AGNTTVISLLLEAGANVDAQ 206 (240)
T ss_dssp THHHHHHTTC-CTTCCCTTTCCCHHHHHHH----HTCHHHHHHHHHHTCCTTCB
T ss_pred HHHHHHhcCC-CcchhhccCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCCc
Confidence 9999999988 9999997 99999999999 66789999999999886443
No 45
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=1.8e-32 Score=253.44 Aligned_cols=198 Identities=24% Similarity=0.282 Sum_probs=172.5
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHh----cCCchhhcc----CCCCCcHHHHHH---HcCCHHHHHHHHhhCCCC-----
Q 041009 25 NCLSETPLHVAALLGHEDFAKEILR----QKPRIAEEL----DSRKSSALHIAS---QKGYVGIVKALLQVIPDK----- 88 (434)
Q Consensus 25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~----d~~g~tpLh~Aa---~~g~~~iv~~Ll~~~~~~----- 88 (434)
+.+|+|+||.||..|+.+.++.|++ .+.++ +.. |..|.||||+|+ ..|+.+++++|++.+++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 5678999999999999996555555 78776 333 478999999999 679999999999986432
Q ss_pred -----CccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCccccccc--------------CCCChHHHHHHHcCCHHHHHHH
Q 041009 89 -----CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARL--------------IWGETILHLCVKHNQLEALKFL 149 (434)
Q Consensus 89 -----~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~g~~~~v~~L 149 (434)
....|..|.||||+|+..|+.+++++|+++++++ +..+ ..|+||||+|+.+|+.+++++|
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 2345568999999999999999999999999988 4445 5799999999999999999999
Q ss_pred HH---hcCCCccccCCCCCCCcHHHHHHHcCc---------HHHHHHhhhcccccc-------cccccCCCCHHHHHHHc
Q 041009 150 LE---NMGDSELLNAKDDYGMTILHLAVADKQ---------IEAIKLLTTSTAIEV-------NAVTANGFTAWDILAQS 210 (434)
Q Consensus 150 l~---~~~~~~~~~~~d~~g~t~LhlA~~~~~---------~~iv~~Ll~~~~~~~-------~~~n~~g~t~l~la~~~ 210 (434)
++ .|++ ++.+|.+|+||||+|+..++ .+++++|+++|+ ++ +..|.+|.||||+|+.
T Consensus 160 l~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga-~~~~~~~~~~~~d~~g~tpL~~A~~- 234 (260)
T 3jxi_A 160 TENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA-KLFPDTNLEALLNNDGLSPLMMAAK- 234 (260)
T ss_dssp HHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH-HHCTTCCGGGCCCTTSCCHHHHHHH-
T ss_pred HhccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc-ccccccchhhcccCCCCCHHHHHHH-
Confidence 99 8888 89999999999999998877 799999999988 88 7899999999999999
Q ss_pred cCCCchhHHHHHHHHcCCCccc
Q 041009 211 KRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 211 ~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
.+..+++++|+++|.....
T Consensus 235 ---~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 235 ---TGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp ---TTCHHHHHHHHHHHHHHHC
T ss_pred ---cCCHHHHHHHHHhCCCccc
Confidence 7789999999999887544
No 46
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=1.8e-30 Score=249.48 Aligned_cols=215 Identities=25% Similarity=0.213 Sum_probs=185.9
Q ss_pred CCChHHHHHHHhcCCCcc------------------------------cccccCCCCCCHHHHHHhcCCHHHHHHHHhcC
Q 041009 2 AGSVNTLLELRQQDPLIV------------------------------ERPTVNCLSETPLHVAALLGHEDFAKEILRQK 51 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~------------------------------~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~ 51 (434)
.|+.++++.|++.+.+.. +.+..|..|.||||+|+..|+.++++.|++++
T Consensus 69 ~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g 148 (337)
T 4g8k_A 69 MSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148 (337)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 588999999998775431 23456788999999999999999999999998
Q ss_pred Cchh---------hccCCCCCcHHHHHHHcCCHHHHHHHHhh-CCCCCccCCCCCCCHHHHHHHhCC----HHHHHHHHH
Q 041009 52 PRIA---------EELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNPLHLAAMRGH----IDVLEELAR 117 (434)
Q Consensus 52 ~~~~---------~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpL~~Aa~~g~----~~~v~~Ll~ 117 (434)
+++. ...+..|.||||+|+..|+.+++++|+++ +.++ +.+|..|.||+|.++..++ .+++++|++
T Consensus 149 a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~ 227 (337)
T 4g8k_A 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD 227 (337)
T ss_dssp CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHH
Confidence 7752 23466799999999999999999999976 6665 8899999999999887654 458899999
Q ss_pred hCCcccccccCCCChHHHHHHHcCCHHHHHHHHHh-cCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccccccc
Q 041009 118 AKPDAASARLIWGETILHLCVKHNQLEALKFLLEN-MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAV 196 (434)
Q Consensus 118 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~ 196 (434)
++.++ +.+|.+|+||||+|++.|+.++++.|++. +.+ ++.+|.+|+||||+|+..|+.+++++|+++|+ |+|
T Consensus 228 ~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA-d~n-- 300 (337)
T 4g8k_A 228 HGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKRGA-STD-- 300 (337)
T ss_dssp TTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC-SST--
T ss_pred CCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCC--
Confidence 99987 67788999999999999999999999986 567 89999999999999999999999999999998 665
Q ss_pred ccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCcc
Q 041009 197 TANGFTAWDILAQSKRDTKDWDIGELLRRAGAISA 231 (434)
Q Consensus 197 n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~ 231 (434)
+.+|||+|+. .+..+++++|+++|++..
T Consensus 301 ---~~~~L~~A~~----~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 301 ---CGDLVMTARR----NYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp ---TCCHHHHHHH----TTCHHHHHHHHHTTCCC-
T ss_pred ---CCCHHHHHHH----cCCHHHHHHHHHCcCCCC
Confidence 4579999999 677899999999999864
No 47
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=1.1e-30 Score=235.68 Aligned_cols=181 Identities=18% Similarity=0.223 Sum_probs=170.6
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKAL 81 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~L 81 (434)
.|+.++++.|++.+.+. +..|..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|
T Consensus 35 ~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 111 (223)
T 2f8y_A 35 YSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111 (223)
T ss_dssp TTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Confidence 68999999999998653 567889999999999999999999999999866688899999999999999999999999
Q ss_pred HhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC
Q 041009 82 LQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNA 161 (434)
Q Consensus 82 l~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 161 (434)
++.+.+. +..|..|.||||+|+..|+.+++++|++++++. +..|..|.||||+|+++|+.+++++|+++|++ ++.
T Consensus 112 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~ 186 (223)
T 2f8y_A 112 INSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDI 186 (223)
T ss_dssp HHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTC
T ss_pred HHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---Ccc
Confidence 9999987 788999999999999999999999999999887 67788999999999999999999999999999 889
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009 162 KDDYGMTILHLAVADKQIEAIKLLTTSTA 190 (434)
Q Consensus 162 ~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~ 190 (434)
+|..|+||||+|+..++.+++++|+++|.
T Consensus 187 ~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 187 TDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 99999999999999999999999999987
No 48
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=3.1e-32 Score=248.27 Aligned_cols=202 Identities=24% Similarity=0.253 Sum_probs=176.7
Q ss_pred CCChHHHHHHHhcCCCc-ccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHH
Q 041009 2 AGSVNTLLELRQQDPLI-VERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKA 80 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~ 80 (434)
.|+.++++.|++..+.. .+.+..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++
T Consensus 18 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~ 96 (236)
T 1ikn_D 18 HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGV 96 (236)
T ss_dssp TTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred cCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 57888888888876531 124567888999999999999999999999999987 7889999999999999999999999
Q ss_pred HHhhCCCC-----CccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccC-CCChHHHHHHHcCCHHHHHHHHHhcC
Q 041009 81 LLQVIPDK-----CSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLI-WGETILHLCVKHNQLEALKFLLENMG 154 (434)
Q Consensus 81 Ll~~~~~~-----~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 154 (434)
|++.+++. .+..|..|.||||+|+..|+.+++++|+++++++ ...+. .|.||||+|+..|+.+++++|+++|+
T Consensus 97 Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga 175 (236)
T 1ikn_D 97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175 (236)
T ss_dssp HHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99998642 4678889999999999999999999999999998 45555 89999999999999999999999999
Q ss_pred CCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccccccc--ccccCCCCHHHHHHH
Q 041009 155 DSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVN--AVTANGFTAWDILAQ 209 (434)
Q Consensus 155 ~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~--~~n~~g~t~l~la~~ 209 (434)
+ ++.+|..|+||||+|+..++.+++++|+++|+ +.. ..+.+|.||.+.+..
T Consensus 176 ~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 176 D---VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL-ENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp C---SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC-GGGSSCCCCCTTTCCCCC--
T ss_pred C---CCcccCCCCCHHHHHHccCchHHHHHHHHcch-hhhhcCCccchHHHHhhhcc
Confidence 9 89999999999999999999999999999998 554 788999999876544
No 49
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=5.9e-31 Score=227.76 Aligned_cols=170 Identities=24% Similarity=0.219 Sum_probs=154.8
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG 107 (434)
Q Consensus 28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g 107 (434)
+.||||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 4689999999999999999999999977999999999999999999999999999999987 789999999999999999
Q ss_pred CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009 108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT 187 (434)
Q Consensus 108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~ 187 (434)
+.+++++|++++.+. +..|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus 81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence 999999999999887 67788999999999999999999999999999 88999999999999999999999999999
Q ss_pred cccccccccccCCCCH
Q 041009 188 STAIEVNAVTANGFTA 203 (434)
Q Consensus 188 ~~~~~~~~~n~~g~t~ 203 (434)
++. +....|..|.||
T Consensus 157 ~~~-~~~~~~~~~~~p 171 (172)
T 3v30_A 157 HIL-KLFQSNLVPADP 171 (172)
T ss_dssp HHH-HHSCC-------
T ss_pred HHH-HHhcccCCCCCC
Confidence 988 888888888887
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=9.3e-31 Score=225.85 Aligned_cols=158 Identities=33% Similarity=0.431 Sum_probs=147.3
Q ss_pred cHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCH
Q 041009 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQL 143 (434)
Q Consensus 64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~ 143 (434)
++|+.||..|+.++|+.|++.|+++ +.+|.+|+||||+|+..|+.++++.|++++.++ ..+|.+|+||||+|+.+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence 4799999999999999999999998 899999999999999999999999999999987 67789999999999999999
Q ss_pred HHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHH
Q 041009 144 EALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELL 223 (434)
Q Consensus 144 ~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L 223 (434)
+++++|++.|++ +|.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|.+|.||||+|+. .+..+++++|
T Consensus 84 ~~v~~Ll~~gad---vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~----~g~~~iv~~L 155 (169)
T 4gpm_A 84 EVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNTSDSDGRTPLDLARE----HGNEEVVKLL 155 (169)
T ss_dssp HHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHH----cCCHHHHHHH
Confidence 999999999999 89999999999999999999999999999988 999999999999999999 6778999999
Q ss_pred HHcCCCcc
Q 041009 224 RRAGAISA 231 (434)
Q Consensus 224 ~~~g~~~~ 231 (434)
+++|++..
T Consensus 156 l~~GA~ie 163 (169)
T 4gpm_A 156 EKQGGWLE 163 (169)
T ss_dssp HTC-----
T ss_pred HHCCCCcC
Confidence 99999863
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=7.7e-31 Score=244.45 Aligned_cols=202 Identities=21% Similarity=0.201 Sum_probs=160.4
Q ss_pred CCChHHHHHHHh----cCCCccccc-ccCCCCCCHHHHHHhc---CCHHHHHHHHhcCCch------hh----ccCCCCC
Q 041009 2 AGSVNTLLELRQ----QDPLIVERP-TVNCLSETPLHVAALL---GHEDFAKEILRQKPRI------AE----ELDSRKS 63 (434)
Q Consensus 2 ~G~~~~v~~Ll~----~~~~~~~~~-~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~------~~----~~d~~g~ 63 (434)
.|++++++.|++ .+.++.+.. ..|..|.||||+|+.. |+.+++++|++.+++. ++ ..|..|.
T Consensus 23 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~ 102 (273)
T 2pnn_A 23 QSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQ 102 (273)
T ss_dssp TTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTC
T ss_pred cCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCC
Confidence 588998888887 333322111 3478899999999987 9999999999997652 12 2567999
Q ss_pred cHHHHHHHcCCHHHHHHHHhhCCCCCccCCC--------------CCCCHHHHHHHhCCHHHHHHHHH---hCCcccccc
Q 041009 64 SALHIASQKGYVGIVKALLQVIPDKCSDTDV--------------DGRNPLHLAAMRGHIDVLEELAR---AKPDAASAR 126 (434)
Q Consensus 64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~tpL~~Aa~~g~~~~v~~Ll~---~~~~~~~~~ 126 (434)
||||+|+..|+.+++++|++.++++ +..+. .|.||||+|+..|+.+++++|++ ++.+. +.+
T Consensus 103 tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~ 180 (273)
T 2pnn_A 103 TALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SAR 180 (273)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eee
Confidence 9999999999999999999999987 66665 79999999999999999999999 78877 677
Q ss_pred cCCCChHHHHHHHcCC---------HHHHHHHHHhcCCCc----cccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccc
Q 041009 127 LIWGETILHLCVKHNQ---------LEALKFLLENMGDSE----LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEV 193 (434)
Q Consensus 127 ~~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~----~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~ 193 (434)
|.+|+||||+|+..|+ .+++++|++.|++.+ +++.+|.+|+||||+|+..|+.+++++|+++|+.|+
T Consensus 181 d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp 260 (273)
T 2pnn_A 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260 (273)
T ss_dssp CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred CCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence 8999999999999998 799999999998821 113589999999999999999999999999999888
Q ss_pred cccccCCCCHHH
Q 041009 194 NAVTANGFTAWD 205 (434)
Q Consensus 194 ~~~n~~g~t~l~ 205 (434)
......+.+|.|
T Consensus 261 ~~~~~~~~~~~~ 272 (273)
T 2pnn_A 261 ECRHAAAHHHHH 272 (273)
T ss_dssp ------------
T ss_pred hhhhhhhhhccC
Confidence 877777766654
No 52
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3e-30 Score=227.50 Aligned_cols=163 Identities=28% Similarity=0.313 Sum_probs=145.5
Q ss_pred cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHH
Q 041009 22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLH 101 (434)
Q Consensus 22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~ 101 (434)
+.+|..|.||||+|+..|+.++++.|++.++++ +..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 106 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM 106 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 446788999999999999999999999998876 777889999999999999999999999998887 788889999999
Q ss_pred HHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHH
Q 041009 102 LAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEA 181 (434)
Q Consensus 102 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~i 181 (434)
+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.++
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCcHHH
Confidence 999999999999999988887 66788899999999999999999999999888 78889999999999999999999
Q ss_pred HHHhhhccc
Q 041009 182 IKLLTTSTA 190 (434)
Q Consensus 182 v~~Ll~~~~ 190 (434)
+++|++++.
T Consensus 183 v~~Ll~~~~ 191 (192)
T 2rfm_A 183 IKIFTEVRR 191 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhccC
Confidence 999987653
No 53
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=6.5e-31 Score=251.70 Aligned_cols=188 Identities=19% Similarity=0.140 Sum_probs=157.5
Q ss_pred hHHHHHHHhcCCCcccccc-cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCC---HHHHHH
Q 041009 5 VNTLLELRQQDPLIVERPT-VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGY---VGIVKA 80 (434)
Q Consensus 5 ~~~v~~Ll~~~~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~---~~iv~~ 80 (434)
.++++.|++.+.+ .+. .|..|.||||+||..|+.++|++|+++|+++ +.+|..|+||||+|+..|+ .++++.
T Consensus 110 ~~~~~~l~~~g~d---vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ 185 (327)
T 1sw6_A 110 QEVNDAFPNTQLN---LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEA 185 (327)
T ss_dssp HHHHHHCTTSCCC---SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHH
T ss_pred HHHHHHHHhcCCC---cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHH
Confidence 3556666666644 355 6889999999999999999999999999988 7889999999999999998 788888
Q ss_pred HHhhCCCCCccCCCCCCCHHHHHHH----hCCHHHHHHHHHh--------------------CCcccccccCCCChHHHH
Q 041009 81 LLQVIPDKCSDTDVDGRNPLHLAAM----RGHIDVLEELARA--------------------KPDAASARLIWGETILHL 136 (434)
Q Consensus 81 Ll~~~~~~~~~~d~~g~tpL~~Aa~----~g~~~~v~~Ll~~--------------------~~~~~~~~~~~g~t~Lh~ 136 (434)
|++.+....+.+|..|+||||+|+. .|+.++++.|++. +.++ ...+..|.||||.
T Consensus 186 ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~ 264 (327)
T 1sw6_A 186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILE 264 (327)
T ss_dssp HHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHH
T ss_pred HHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHH
Confidence 8888744458899999999999999 8999999999987 4555 5678889999999
Q ss_pred HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHH
Q 041009 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQ 209 (434)
Q Consensus 137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~ 209 (434)
|+. +++|++. + ++.+|.+|+||||+|+..|+.+++++|+++|+ |++.+|.+|+||||+|+.
T Consensus 265 a~~------~~~Ll~~--~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga-d~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 265 NLD------LKWIIAN--M---LNAQDSNGDTCLNIAARLGNISIVDALLDYGA-DPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HCS------HHHHHHH--T---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC-CTTCCCTTSCCGGGGTCC
T ss_pred HHH------HHHHHHh--C---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHh
Confidence 986 8899987 4 78999999999999999999999999999988 999999999999999875
No 54
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=4e-30 Score=237.23 Aligned_cols=181 Identities=27% Similarity=0.240 Sum_probs=159.9
Q ss_pred CCChH----HHHHHHhcCCCcccccc----cCCCCCCHHHHHHhc---CCHHHHHHHHhcCCchhh----------ccCC
Q 041009 2 AGSVN----TLLELRQQDPLIVERPT----VNCLSETPLHVAALL---GHEDFAKEILRQKPRIAE----------ELDS 60 (434)
Q Consensus 2 ~G~~~----~v~~Ll~~~~~~~~~~~----~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~----------~~d~ 60 (434)
.|+.+ +++.|++.+.++ +. .|..|.||||+|+.. |+.++++.|++.+++... ..|.
T Consensus 12 ~g~~~~v~~ll~~l~~~g~~i---~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 88 (256)
T 2etb_A 12 RGVPEELTGLLEYLRWNSKYL---TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFY 88 (256)
T ss_dssp HTCGGGGTTHHHHHHHHTCCT---TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTT
T ss_pred cCCHHHHHHHHHHHHHcCCCc---ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccc
Confidence 47887 556666677553 44 688999999999999 999999999999876521 2357
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCC-------------CCCHHHHHHHhCCHHHHHHHHH---hCCcccc
Q 041009 61 RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD-------------GRNPLHLAAMRGHIDVLEELAR---AKPDAAS 124 (434)
Q Consensus 61 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~tpL~~Aa~~g~~~~v~~Ll~---~~~~~~~ 124 (434)
.|.||||+|+..|+.+++++|++.++++ +..|.. |.||||+|+..|+.+++++|++ ++.+. +
T Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n 166 (256)
T 2etb_A 89 QGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-E 166 (256)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-T
T ss_pred cCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-C
Confidence 8999999999999999999999999987 667765 9999999999999999999999 88887 6
Q ss_pred cccCCCChHHHHHHH--cCCHH-------HHHHHHHhcCCCccc-------cCCCCCCCcHHHHHHHcCcHHHHHHhhhc
Q 041009 125 ARLIWGETILHLCVK--HNQLE-------ALKFLLENMGDSELL-------NAKDDYGMTILHLAVADKQIEAIKLLTTS 188 (434)
Q Consensus 125 ~~~~~g~t~Lh~A~~--~g~~~-------~v~~Ll~~~~~~~~~-------~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~ 188 (434)
.+|.+|+||||+|+. +++.+ ++++|++.|++ + +.+|.+|+||||+|+..|+.+++++|+++
T Consensus 167 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR---LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC---cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 778999999999999 88888 99999999988 6 89999999999999999999999999999
Q ss_pred cc
Q 041009 189 TA 190 (434)
Q Consensus 189 ~~ 190 (434)
|.
T Consensus 244 g~ 245 (256)
T 2etb_A 244 EF 245 (256)
T ss_dssp HH
T ss_pred CC
Confidence 76
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=241.73 Aligned_cols=192 Identities=22% Similarity=0.253 Sum_probs=174.9
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCc-hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH-
Q 041009 27 LSETPLHVAALLGHEDFAKEILRQKPR-IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA- 104 (434)
Q Consensus 27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa- 104 (434)
.+.+++|.|+..|+.+.++.+++.+.+ .++..|..|+||||+|+..|+.+++++|++.++...+..|..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 357889999999999999999987665 358889999999999999999999999999998555889999999999999
Q ss_pred ----HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHH
Q 041009 105 ----MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIE 180 (434)
Q Consensus 105 ----~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~ 180 (434)
..|+.++++.|++.+... ...+..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~~~ 230 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGHKE 230 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCCHH
Confidence 678999999999998766 66678899999999999999999999999999 8999999999999999999999
Q ss_pred HHHHhhh-cccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcC
Q 041009 181 AIKLLTT-STAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG 227 (434)
Q Consensus 181 iv~~Ll~-~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g 227 (434)
++++|++ .|+ +++.+|.+|.||+|+|+. .+..+++++|++.+
T Consensus 231 iv~~Ll~~~ga-d~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 231 IAGLLLAVPSC-DISLTDRDGSTALMVALD----AGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHTSTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHC
T ss_pred HHHHHHhcCCC-CCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhcc
Confidence 9999999 555 999999999999999999 66789999998764
No 56
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=2e-29 Score=216.97 Aligned_cols=158 Identities=23% Similarity=0.241 Sum_probs=148.3
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR 106 (434)
Q Consensus 27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~ 106 (434)
.|.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence 4789999999999999999999999876 888999999999999999999999999998887 78899999999999999
Q ss_pred CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009 107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT 186 (434)
Q Consensus 107 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll 186 (434)
|+.+++++|++++++. +..|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 9999999999999887 67788899999999999999999999999998 7889999999999999999999999999
Q ss_pred hccc
Q 041009 187 TSTA 190 (434)
Q Consensus 187 ~~~~ 190 (434)
+++.
T Consensus 156 ~~~~ 159 (167)
T 3v31_A 156 SHLL 159 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=5.5e-30 Score=239.29 Aligned_cols=183 Identities=19% Similarity=0.195 Sum_probs=164.3
Q ss_pred CChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHH-----HcCCHHH
Q 041009 3 GSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIAS-----QKGYVGI 77 (434)
Q Consensus 3 G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa-----~~g~~~i 77 (434)
|+++.++.+++...+. ..+..|.+|.||||+||..|+.++++.|++.++...+..|..|.||||+|+ ..++.++
T Consensus 87 ~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~ 165 (276)
T 4hbd_A 87 RHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIET 165 (276)
T ss_dssp HHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHH
Confidence 5567777777654331 246678899999999999999999999999999556899999999999999 6688999
Q ss_pred HHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHH-hcCCC
Q 041009 78 VKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLE-NMGDS 156 (434)
Q Consensus 78 v~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~ 156 (434)
+++|++.+... +..|..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.+|+.+++++|++ .|++
T Consensus 166 v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad- 242 (276)
T 4hbd_A 166 VLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD- 242 (276)
T ss_dssp HHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-
T ss_pred HHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-
Confidence 99999999776 778899999999999999999999999999987 6778999999999999999999999999 8888
Q ss_pred ccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccc
Q 041009 157 ELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAI 191 (434)
Q Consensus 157 ~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~ 191 (434)
++.+|.+|+||||+|+..|+.+++++|+++..+
T Consensus 243 --~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 243 --ISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp --TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred --CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 899999999999999999999999999987653
No 58
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=2.6e-29 Score=216.93 Aligned_cols=160 Identities=28% Similarity=0.409 Sum_probs=146.2
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 041009 24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA 103 (434)
Q Consensus 24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A 103 (434)
....+.++||.||..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLA 87 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence 4556789999999999999999999999887 788999999999999999999999999999887 78899999999999
Q ss_pred HHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHH
Q 041009 104 AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183 (434)
Q Consensus 104 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~ 183 (434)
+..|+.+++++|++++++. +..|.+|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHHHHH
Confidence 9999999999999999887 66788899999999999999999999999998 8899999999999999999999999
Q ss_pred Hhhhcc
Q 041009 184 LLTTST 189 (434)
Q Consensus 184 ~Ll~~~ 189 (434)
+|++.|
T Consensus 164 ~L~~~G 169 (169)
T 2y1l_E 164 ILQKLN 169 (169)
T ss_dssp HHHTC-
T ss_pred HHHHcC
Confidence 998764
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.5e-29 Score=216.49 Aligned_cols=158 Identities=23% Similarity=0.266 Sum_probs=144.0
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR 106 (434)
Q Consensus 27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~ 106 (434)
...||||.|+..|+.++++.|++++.++ +..|..|+||||+|+. |+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 3679999999999999999999999887 7889999999999999 9999999999998887 78899999999999999
Q ss_pred CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009 107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT 186 (434)
Q Consensus 107 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll 186 (434)
|+.+++++|+++++++ +.+|.+|+||||+|+++|+.+++++|+++|++. ++.+|..|+||||+|+..|+.+++++|+
T Consensus 81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 9999999999998887 667888999999999999999999999998873 5888999999999999999999999999
Q ss_pred hccc
Q 041009 187 TSTA 190 (434)
Q Consensus 187 ~~~~ 190 (434)
++|+
T Consensus 158 ~~GA 161 (162)
T 1ihb_A 158 ANGA 161 (162)
T ss_dssp HTC-
T ss_pred HhCC
Confidence 9876
No 60
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=6.6e-30 Score=236.25 Aligned_cols=187 Identities=21% Similarity=0.206 Sum_probs=158.3
Q ss_pred CCChHHHHHHHh----cCCCccccc-ccCCCCCCHHHHHH---hcCCHHHHHHHHhcCCch----------hhccCCCCC
Q 041009 2 AGSVNTLLELRQ----QDPLIVERP-TVNCLSETPLHVAA---LLGHEDFAKEILRQKPRI----------AEELDSRKS 63 (434)
Q Consensus 2 ~G~~~~v~~Ll~----~~~~~~~~~-~~~~~g~t~Lh~Aa---~~g~~~~v~~Ll~~~~~~----------~~~~d~~g~ 63 (434)
.|+.+.++.|++ .+.++.... ..|..|.||||+|+ ..|+.++++.|++.+++. .+..|..|+
T Consensus 15 ~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~ 94 (260)
T 3jxi_A 15 RGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQ 94 (260)
T ss_dssp HTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESB
T ss_pred hCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCC
Confidence 488886555555 666543222 23477999999999 679999999999987542 234456899
Q ss_pred cHHHHHHHcCCHHHHHHHHhhCCCCCccCC--------------CCCCCHHHHHHHhCCHHHHHHHHH---hCCcccccc
Q 041009 64 SALHIASQKGYVGIVKALLQVIPDKCSDTD--------------VDGRNPLHLAAMRGHIDVLEELAR---AKPDAASAR 126 (434)
Q Consensus 64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpL~~Aa~~g~~~~v~~Ll~---~~~~~~~~~ 126 (434)
||||+|+..|+.+++++|++.++++ +..| ..|.||||+|+..|+.+++++|++ ++.++ +.+
T Consensus 95 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~ 172 (260)
T 3jxi_A 95 TALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQ 172 (260)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-ccc
Confidence 9999999999999999999999987 6676 689999999999999999999999 78887 677
Q ss_pred cCCCChHHHHHHHcCC---------HHHHHHHHHhcCCCc----cccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009 127 LIWGETILHLCVKHNQ---------LEALKFLLENMGDSE----LLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190 (434)
Q Consensus 127 ~~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~----~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~ 190 (434)
|.+|+||||+|+..++ .+++++|++.|++.. +.+.+|.+|+||||+|+..|+.+++++|+++|.
T Consensus 173 d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 8999999999999888 799999999998721 127799999999999999999999999999987
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=3e-29 Score=221.04 Aligned_cols=164 Identities=21% Similarity=0.229 Sum_probs=154.2
Q ss_pred hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChH
Q 041009 54 IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETI 133 (434)
Q Consensus 54 ~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 133 (434)
..+.+|..|+||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++++. ...|..|.||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 104 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTP 104 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcH
Confidence 34678999999999999999999999999999887 788999999999999999999999999999887 6778899999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCC
Q 041009 134 LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRD 213 (434)
Q Consensus 134 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~ 213 (434)
||+|+.+|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+.
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~---- 176 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASARI---- 176 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHH----
T ss_pred HHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHH----
Confidence 9999999999999999999999 89999999999999999999999999999988 999999999999999999
Q ss_pred CchhHHHHHHHHcC
Q 041009 214 TKDWDIGELLRRAG 227 (434)
Q Consensus 214 ~~~~~i~~~L~~~g 227 (434)
.+..+++++|.+.|
T Consensus 177 ~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 177 FGRQEVIKIFTEVR 190 (192)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hCcHHHHHHHHhcc
Confidence 67789999998764
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3e-29 Score=218.60 Aligned_cols=169 Identities=20% Similarity=0.157 Sum_probs=148.8
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009 26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105 (434)
Q Consensus 26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~ 105 (434)
..+.++||.||..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 347899999999999999999999977767888999999999999999999999999998887 7888999999999999
Q ss_pred hCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185 (434)
Q Consensus 106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L 185 (434)
.|+.+++++|++++++. +..|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..++.+++++|
T Consensus 82 ~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~L 157 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRELLRERA 157 (179)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999998887 66788899999999999999999999999988 888999999999999999999999999
Q ss_pred hhcccccccccccCC
Q 041009 186 TTSTAIEVNAVTANG 200 (434)
Q Consensus 186 l~~~~~~~~~~n~~g 200 (434)
++.|+ +++..+..+
T Consensus 158 ~~~g~-~~~~~~~~~ 171 (179)
T 3f6q_A 158 EKMGQ-NLNRIPYKD 171 (179)
T ss_dssp HHTTC-CCSCBCCCC
T ss_pred HHhhc-CcccCCccc
Confidence 99888 777666544
No 63
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.9e-29 Score=216.65 Aligned_cols=160 Identities=28% Similarity=0.328 Sum_probs=124.1
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHH
Q 041009 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAA 104 (434)
Q Consensus 25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa 104 (434)
|..|+||||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence 4557788888888888888888888766655677777888888888888888888888887776 677778888888888
Q ss_pred HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009 105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL 184 (434)
Q Consensus 105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~ 184 (434)
..|+.+++++|++++.+. +..|.+|+||||+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+. ++.+++++
T Consensus 84 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc-CChHHHHH
Confidence 888888888888877776 55677788888888888888888888888777 67778888888888665 77788888
Q ss_pred hhhccc
Q 041009 185 LTTSTA 190 (434)
Q Consensus 185 Ll~~~~ 190 (434)
|+++|+
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 877664
No 64
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.7e-32 Score=244.08 Aligned_cols=193 Identities=17% Similarity=0.111 Sum_probs=164.4
Q ss_pred HHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCC
Q 041009 8 LLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPD 87 (434)
Q Consensus 8 v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~ 87 (434)
++.|++++......+..+.+|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+..|+.+++++|++.+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 46778877665545556777889999999999999999999999987 78899999999999999999999999999998
Q ss_pred CCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHH--HHcCCHHHHHHHHHhcCCCccccCCCCC
Q 041009 88 KCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC--VKHNQLEALKFLLENMGDSELLNAKDDY 165 (434)
Q Consensus 88 ~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~d~~ 165 (434)
+ +.+|..|.||||+|+..|+.+++++|++++++.....+.+|+||||+| +..|+.+++++|++.|++ ++.+|..
T Consensus 80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~~ 155 (229)
T 2vge_A 80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSG 155 (229)
T ss_dssp T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGGG
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccCC
Confidence 7 889999999999999999999999999999998555457899999999 999999999999999998 8889999
Q ss_pred CCcHHHHHHHcCcHHHHHHhhhccccc--ccccccCCCCHHHHHHH
Q 041009 166 GMTILHLAVADKQIEAIKLLTTSTAIE--VNAVTANGFTAWDILAQ 209 (434)
Q Consensus 166 g~t~LhlA~~~~~~~iv~~Ll~~~~~~--~~~~n~~g~t~l~la~~ 209 (434)
|.|++|.++.... .++|++.|+ + ++.+|.+|.||||+|+.
T Consensus 156 ~~~~l~~~~~~~~---~~~ll~~ga-~~~~~~~d~~G~TpL~~A~~ 197 (229)
T 2vge_A 156 AVYALWDYSAEFG---DELSFREGE-SVTVLRRDGPEETDWWWAAL 197 (229)
T ss_dssp EEEESSCBCCSST---TBCCBCTTC-EEEEEESSCTTCSSEEEEEE
T ss_pred chHHHHHHhhccc---cccCccccc-cccccccCCCcccHHHHHHH
Confidence 9999996655442 367777776 5 78899999999999988
No 65
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=1.6e-28 Score=208.28 Aligned_cols=151 Identities=24% Similarity=0.365 Sum_probs=136.9
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG 107 (434)
Q Consensus 28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g 107 (434)
..||||.|+..|+.++++.|++.+++. + .|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 458999999999999999999998876 3 5888999999999999999999999998887 788899999999999999
Q ss_pred CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHh
Q 041009 108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLL 185 (434)
Q Consensus 108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~L 185 (434)
+.+++++|+++++++ +..|.+|+||||+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|
T Consensus 79 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 79 HANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999998887 66788899999999999999999999999988 888999999999999999999999886
No 66
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=1.7e-29 Score=241.88 Aligned_cols=212 Identities=17% Similarity=0.092 Sum_probs=165.8
Q ss_pred CChHHHHHHHhcCCCccccc--------------ccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhc-cCCCCCcHHH
Q 041009 3 GSVNTLLELRQQDPLIVERP--------------TVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEE-LDSRKSSALH 67 (434)
Q Consensus 3 G~~~~v~~Ll~~~~~~~~~~--------------~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh 67 (434)
|+.++++.|++++.+.-... .......+.+|.|+..+..++++.|++.+.++ +. .|..|+||||
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh 136 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLH 136 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHH
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHH
Confidence 78999999998773311000 01111223458888888889999999999988 66 8999999999
Q ss_pred HHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCC---HHHHHHHHHhCCcccccccCCCChHHHHHHH----c
Q 041009 68 IASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGH---IDVLEELARAKPDAASARLIWGETILHLCVK----H 140 (434)
Q Consensus 68 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~---~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~----~ 140 (434)
+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+ .++++.|++.+.......|..|+||||+|+. .
T Consensus 137 ~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~ 215 (327)
T 1sw6_A 137 WLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 215 (327)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTST
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccc
Confidence 999999999999999999988 7999999999999999998 7888888888755557889999999999999 8
Q ss_pred CCHHHHHHHHHh--------------------cCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCC
Q 041009 141 NQLEALKFLLEN--------------------MGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200 (434)
Q Consensus 141 g~~~~v~~Ll~~--------------------~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g 200 (434)
|+.+++++|++. |++ ++.+|..|.||||.|+. +++|+++ +++.+|.+|
T Consensus 216 g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G 283 (327)
T 1sw6_A 216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK---PNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNG 283 (327)
T ss_dssp TCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------------CHHHHHCS------HHHHHHH---TTTCCCTTS
T ss_pred ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC---cccccccCCChhHHHHH------HHHHHHh---CCCCCCCCC
Confidence 999999999987 566 88999999999999985 8889887 789999999
Q ss_pred CCHHHHHHHccCCCchhHHHHHHHHcCCCccc
Q 041009 201 FTAWDILAQSKRDTKDWDIGELLRRAGAISAQ 232 (434)
Q Consensus 201 ~t~l~la~~~~~~~~~~~i~~~L~~~g~~~~~ 232 (434)
.||||+|+. .+..+++++|+++|++...
T Consensus 284 ~TpLh~A~~----~g~~~~v~~Ll~~Gad~~~ 311 (327)
T 1sw6_A 284 DTCLNIAAR----LGNISIVDALLDYGADPFI 311 (327)
T ss_dssp CCHHHHHHH----HCCHHHHHHHHHTTCCTTC
T ss_pred CCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence 999999999 6678999999999998644
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.7e-28 Score=211.18 Aligned_cols=160 Identities=23% Similarity=0.236 Sum_probs=150.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHc
Q 041009 61 RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKH 140 (434)
Q Consensus 61 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 140 (434)
.|.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++++++ ...+..|.||||+|+.+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence 5889999999999999999999999876 889999999999999999999999999998887 66788899999999999
Q ss_pred CCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHH
Q 041009 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIG 220 (434)
Q Consensus 141 g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~ 220 (434)
|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|.+|.||+|+|+. .+..+++
T Consensus 80 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~----~~~~~~~ 151 (167)
T 3v31_A 80 GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA-DPTIETDSGYNSMDLAVA----LGYRSVQ 151 (167)
T ss_dssp TCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHH
T ss_pred CCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----cCcHHHH
Confidence 999999999999999 89999999999999999999999999999988 999999999999999999 6678999
Q ss_pred HHHHHcCCCc
Q 041009 221 ELLRRAGAIS 230 (434)
Q Consensus 221 ~~L~~~g~~~ 230 (434)
++|.+++.+.
T Consensus 152 ~~L~~~~~~~ 161 (167)
T 3v31_A 152 QVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876654
No 68
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=2.3e-28 Score=207.78 Aligned_cols=154 Identities=25% Similarity=0.323 Sum_probs=140.1
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG 107 (434)
Q Consensus 28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g 107 (434)
|.||||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|++.+.++ +.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 56899999999999999999998444558889999999999 9999999999999999887 788999999999999999
Q ss_pred CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhh
Q 041009 108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTT 187 (434)
Q Consensus 108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~ 187 (434)
+.+++++|+++++++ +..|.+|+||||+|+.+|+.+++++|++. ++ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus 80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 999999999999887 66788899999999999999999999998 77 88899999999999999999999999986
Q ss_pred c
Q 041009 188 S 188 (434)
Q Consensus 188 ~ 188 (434)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 4
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=6.4e-28 Score=208.14 Aligned_cols=161 Identities=34% Similarity=0.413 Sum_probs=148.1
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHH
Q 041009 57 ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHL 136 (434)
Q Consensus 57 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~ 136 (434)
.....+.+|||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++.+. +..|..|.||||+
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL 86 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 34566789999999999999999999999887 788999999999999999999999999999887 6678889999999
Q ss_pred HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCch
Q 041009 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKD 216 (434)
Q Consensus 137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~ 216 (434)
|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..++.+++++|+++|+ +++.+|..|.||+|+|+. .+.
T Consensus 87 A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~----~~~ 158 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDISID----NGN 158 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTC
T ss_pred HHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----hCC
Confidence 9999999999999999999 89999999999999999999999999999988 999999999999999999 677
Q ss_pred hHHHHHHHHcC
Q 041009 217 WDIGELLRRAG 227 (434)
Q Consensus 217 ~~i~~~L~~~g 227 (434)
.+++++|.+.|
T Consensus 159 ~~~~~~L~~~G 169 (169)
T 2y1l_E 159 EDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHcC
Confidence 89999998765
No 70
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3e-28 Score=208.35 Aligned_cols=160 Identities=23% Similarity=0.285 Sum_probs=147.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 041009 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVK 139 (434)
Q Consensus 60 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 139 (434)
+...||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+. |+.+++++|+++++++ +..+..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAAR 79 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence 34679999999999999999999999887 7889999999999999 9999999999999887 6678899999999999
Q ss_pred cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHH
Q 041009 140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDI 219 (434)
Q Consensus 140 ~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i 219 (434)
+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++++.+++..|..|.||+|+|+. .+..++
T Consensus 80 ~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~----~~~~~~ 152 (162)
T 1ihb_A 80 AGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL----YGRNEV 152 (162)
T ss_dssp HTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH----TTCHHH
T ss_pred cCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH----cCCHHH
Confidence 9999999999999998 899999999999999999999999999999984479999999999999999 677899
Q ss_pred HHHHHHcCCC
Q 041009 220 GELLRRAGAI 229 (434)
Q Consensus 220 ~~~L~~~g~~ 229 (434)
+++|.++|++
T Consensus 153 ~~~Ll~~GAd 162 (162)
T 1ihb_A 153 VSLMQANGAG 162 (162)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHhCCC
Confidence 9999999974
No 71
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.8e-28 Score=210.86 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=150.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC
Q 041009 62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN 141 (434)
Q Consensus 62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g 141 (434)
+.||||.|+..|+.++++.|++.+++..+..|..|.||||+|+..|+.+++++|+++++++ +..+..|+||||+|+.+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 5689999999999999999999998866889999999999999999999999999999887 667888999999999999
Q ss_pred CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHH
Q 041009 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGE 221 (434)
Q Consensus 142 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~ 221 (434)
+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|.+|.||+|+|+. .+..++++
T Consensus 81 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~~~~ 152 (172)
T 3v30_A 81 YTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLARGA-DLTTEADSGYTPMDLAVA----LGYRKVQQ 152 (172)
T ss_dssp CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----HTCHHHHH
T ss_pred CHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHH----hCcHHHHH
Confidence 99999999999999 89999999999999999999999999999987 999999999999999999 66789999
Q ss_pred HHHHcCCCcc
Q 041009 222 LLRRAGAISA 231 (434)
Q Consensus 222 ~L~~~g~~~~ 231 (434)
+|.++|++..
T Consensus 153 ~L~~~~~~~~ 162 (172)
T 3v30_A 153 VIENHILKLF 162 (172)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=3.1e-28 Score=209.07 Aligned_cols=161 Identities=30% Similarity=0.328 Sum_probs=146.7
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHH
Q 041009 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC 137 (434)
Q Consensus 58 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A 137 (434)
.|.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++++++ +..|.+|+||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 47788999999999999999999999877666788889999999999999999999999999887 67788999999999
Q ss_pred HHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchh
Q 041009 138 VKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDW 217 (434)
Q Consensus 138 ~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~ 217 (434)
+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|.+|.||+|+|.. +..
T Consensus 83 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~a~~-----~~~ 153 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA-DPTKKNRDGNTPLDLVKD-----GDT 153 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCTGGGSCT-----TCH
T ss_pred HHcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCChhHhHhc-----CCh
Confidence 999999999999999999 89999999999999999999999999999987 999999999999999654 446
Q ss_pred HHHHHHHHcCC
Q 041009 218 DIGELLRRAGA 228 (434)
Q Consensus 218 ~i~~~L~~~g~ 228 (434)
+++++|.+.|+
T Consensus 154 ~i~~~L~~~gA 164 (165)
T 3twr_A 154 DIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHhhccc
Confidence 89999998876
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1e-27 Score=208.82 Aligned_cols=164 Identities=21% Similarity=0.182 Sum_probs=150.8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 041009 60 SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVK 139 (434)
Q Consensus 60 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 139 (434)
.++.+|||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 457899999999999999999999977666889999999999999999999999999999887 6678899999999999
Q ss_pred cCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHH
Q 041009 140 HNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDI 219 (434)
Q Consensus 140 ~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i 219 (434)
+|+.+++++|++.|++ ++.+|.+|+||||+|+..++.+++++|+++|+ +++..|..|.||+|+|.. ....++
T Consensus 82 ~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~----~~~~~~ 153 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVANGA-LVSICNKYGEMPVDKAKA----PLRELL 153 (179)
T ss_dssp TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSSBCCTTSCCGGGGSCH----HHHHHH
T ss_pred cCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CcchhccCCCCcHHHHHH----HHHHHH
Confidence 9999999999999999 89999999999999999999999999999988 999999999999999988 677899
Q ss_pred HHHHHHcCCCccc
Q 041009 220 GELLRRAGAISAQ 232 (434)
Q Consensus 220 ~~~L~~~g~~~~~ 232 (434)
+++|.+.|++...
T Consensus 154 ~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 154 RERAEKMGQNLNR 166 (179)
T ss_dssp HHHHHHTTCCCSC
T ss_pred HHHHHHhhcCccc
Confidence 9999999998643
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=3.4e-27 Score=200.05 Aligned_cols=151 Identities=32% Similarity=0.363 Sum_probs=141.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC
Q 041009 62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN 141 (434)
Q Consensus 62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g 141 (434)
+.||||.|+..|+.+++++|++.+.+. + .|..|.||||+|+..|+.+++++|++++++. +..+..|+||||+|+.+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 468999999999999999999999876 3 6889999999999999999999999999887 677888999999999999
Q ss_pred CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHH
Q 041009 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGE 221 (434)
Q Consensus 142 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~ 221 (434)
+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|+ +++.+|..|.||+|+|+. .+..++++
T Consensus 79 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~----~~~~~i~~ 150 (153)
T 1awc_B 79 HANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDISID----NGNEDLAE 150 (153)
T ss_dssp CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHH
T ss_pred hHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHH----cCCHHHHH
Confidence 99999999999999 89999999999999999999999999999988 999999999999999999 67788888
Q ss_pred HH
Q 041009 222 LL 223 (434)
Q Consensus 222 ~L 223 (434)
+|
T Consensus 151 ~L 152 (153)
T 1awc_B 151 IL 152 (153)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 75
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=1.9e-28 Score=223.91 Aligned_cols=176 Identities=17% Similarity=0.164 Sum_probs=129.4
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009 26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105 (434)
Q Consensus 26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~ 105 (434)
..|.||||.|+..|+.+.++.|+++|.++ + .+..|.||||.|+..|+.+++++|++.++++ +.+|..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 45999999999999999999999999987 3 3578899999999999999999999999976 8899999999999999
Q ss_pred hCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCC-cHHHHH--HHcCcHHHH
Q 041009 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGM-TILHLA--VADKQIEAI 182 (434)
Q Consensus 106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~-t~LhlA--~~~~~~~iv 182 (434)
.|+.+++++|++++++. +.+|.+|+||||+|+.+|+.+++++|+++|++ ++.+|..|. ||||+| +..|+.+++
T Consensus 80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccHHHH
Confidence 99999999999999987 77788999999999999999999999999999 888888877 999999 788999999
Q ss_pred HHhhhccccccccc---------ccCCCCHHHHHHH
Q 041009 183 KLLTTSTAIEVNAV---------TANGFTAWDILAQ 209 (434)
Q Consensus 183 ~~Ll~~~~~~~~~~---------n~~g~t~l~la~~ 209 (434)
++|+++++ +++.. +..+.++.+++..
T Consensus 156 ~~Ll~~~a-~~~~~~~~~~~al~d~~~~~~~eLa~~ 190 (239)
T 1ycs_B 156 QFLYGVQE-KMGIMNKGVIYALWDYEPQNDDELPMK 190 (239)
T ss_dssp HHHHHHHH-HTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred HHHHHhhh-cccccccceEEEEeccCCCCCCccccc
Confidence 99999987 77666 4557777776554
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=8.4e-27 Score=198.09 Aligned_cols=153 Identities=23% Similarity=0.312 Sum_probs=142.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC
Q 041009 62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN 141 (434)
Q Consensus 62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g 141 (434)
|.||||.|+..|+.++++.|++......+..|..|.||||+ +..|+.+++++|+++++++ +..|..|+||||+|+.+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 57999999999999999999999433447899999999999 9999999999999999887 677889999999999999
Q ss_pred CHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHH
Q 041009 142 QLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGE 221 (434)
Q Consensus 142 ~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~ 221 (434)
+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|+++ + +++..|.+|.||+|+|+. .+..++++
T Consensus 80 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~-~~~~~~~~g~t~l~~A~~----~~~~~~v~ 150 (156)
T 1bd8_A 80 FLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S-DLHRRDARGLTPLELALQ----RGAQDLVD 150 (156)
T ss_dssp CHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S-CTTCCCTTSCCHHHHHHH----SCCHHHHH
T ss_pred cHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c-CCCCcCCCCCCHHHHHHH----cCcHHHHH
Confidence 99999999999998 899999999999999999999999999998 5 999999999999999999 67789999
Q ss_pred HHHH
Q 041009 222 LLRR 225 (434)
Q Consensus 222 ~L~~ 225 (434)
+|.+
T Consensus 151 ~Ll~ 154 (156)
T 1bd8_A 151 ILQG 154 (156)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 77
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=6.5e-26 Score=192.89 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=72.6
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCCh-HHHH
Q 041009 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGET-ILHL 136 (434)
Q Consensus 58 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~Lh~ 136 (434)
.+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+ .|+.+++++|++++.+. +.+|..|+| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 3445555555555555555555555555444 445555555555553 55555555555555444 344555555 6666
Q ss_pred HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHH
Q 041009 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD 205 (434)
Q Consensus 137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~ 205 (434)
|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|+ +++.+|..|.||.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAAAG-GTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC-CCCccCcCcCcccc
Confidence 6666666666666666666 56666666666666666666666666666665 66666666666655
No 78
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=3.2e-26 Score=200.61 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=140.2
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCH----HHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 041009 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYV----GIVKALLQVIPDKCSDTDVDGRNPLHLA 103 (434)
Q Consensus 28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpL~~A 103 (434)
+.++|+.|+..|+.+.++.+++.+.+. ..|..|+||||+|+..|+. +++++|+++|+++ +.+|.+|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 468999999999999999999987653 2237799999999999975 5999999999998 88999999999999
Q ss_pred HHhCC------HHHHHHHHHhCCcccccccCCCC-hHHHHHHHcCC-----HHHHHHHHH-hcCCCccccCCCCCCCcHH
Q 041009 104 AMRGH------IDVLEELARAKPDAASARLIWGE-TILHLCVKHNQ-----LEALKFLLE-NMGDSELLNAKDDYGMTIL 170 (434)
Q Consensus 104 a~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~g~-----~~~v~~Ll~-~~~~~~~~~~~d~~g~t~L 170 (434)
+..|+ .+++++|+++|+++ +.+|..|+ ||||+|+..+. .+++++|++ .|++ ++.+|.+|+|||
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~~G~TpL 158 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTAL 158 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCTTSCCHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCCCCCCHH
Confidence 99987 67899999999988 67788899 99999998543 568999999 8999 899999999999
Q ss_pred HHHHHcCcHHHHHHhhhcccccccccc
Q 041009 171 HLAVADKQIEAIKLLTTSTAIEVNAVT 197 (434)
Q Consensus 171 hlA~~~~~~~iv~~Ll~~~~~~~~~~n 197 (434)
|+|+..++.+++++|.+... +.+.++
T Consensus 159 ~~A~~~~~~~~v~~L~~~~~-~~~~~~ 184 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDYIK-KYNLKE 184 (186)
T ss_dssp HHHHTTTCHHHHHHHHHHHH-HHTCCC
T ss_pred HHHHHcCCHHHHHHHHHHHH-HHhccc
Confidence 99999999999999987755 555544
No 79
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=2.4e-25 Score=184.83 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=92.2
Q ss_pred cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCC-CCCHH
Q 041009 22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVD-GRNPL 100 (434)
Q Consensus 22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-g~tpL 100 (434)
+..|..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+. |+.+++++|++.++++ +.+|.. |.|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence 445666777777777777777777777777665 6667777777777777 7777777777777766 566666 67777
Q ss_pred HHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 041009 101 HLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGD 155 (434)
Q Consensus 101 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 155 (434)
|+|+..|+.+++++|+++++++ +.+|..|+||||+|+++|+.+++++|+++|++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7777777777777777776665 45566677777777777777777777766653
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=9.7e-26 Score=191.79 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=118.1
Q ss_pred ccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCC-HHH
Q 041009 23 TVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRN-PLH 101 (434)
Q Consensus 23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-pL~ 101 (434)
..+..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+ .|+.+++++|++.+.++ +.+|..|.| |||
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH 83 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence 45677999999999999999999999999887 788999999999985 99999999999999887 889999999 999
Q ss_pred HHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHH
Q 041009 102 LAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLA 173 (434)
Q Consensus 102 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA 173 (434)
+|+..|+.+++++|+++++++ +.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|.||.+-+
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred HHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccC
Confidence 999999999999999999987 67788999999999999999999999999999 889999999998744
No 81
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=6.7e-26 Score=206.90 Aligned_cols=164 Identities=21% Similarity=0.130 Sum_probs=118.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 041009 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138 (434)
Q Consensus 59 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~ 138 (434)
+..|.||||.|+..|+.++++.|+++|.+. + .+..|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 456999999999999999999999999887 3 3478899999999999999999999999976 677889999999999
Q ss_pred HcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCC-CHHHHHHHccCCCchh
Q 041009 139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGF-TAWDILAQSKRDTKDW 217 (434)
Q Consensus 139 ~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~-t~l~la~~~~~~~~~~ 217 (434)
.+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|+ +++..|..|. ||+|+|.. ...++.
T Consensus 79 ~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~~~~t~l~~a~~--~~~g~~ 152 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVESGA-AVFAMTYSDMQTAADKCEE--MEEGYT 152 (239)
T ss_dssp HHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCSSSCCCHHHHCCS--SSTTCC
T ss_pred HcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CcceecCCCCcchHHHHHH--hhhccH
Confidence 99999999999999999 89999999999999999999999999999988 9999998887 99998832 125668
Q ss_pred HHHHHHHHcCCCcc
Q 041009 218 DIGELLRRAGAISA 231 (434)
Q Consensus 218 ~i~~~L~~~g~~~~ 231 (434)
+++++|.++|++..
T Consensus 153 ~~~~~Ll~~~a~~~ 166 (239)
T 1ycs_B 153 QCSQFLYGVQEKMG 166 (239)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhccc
Confidence 89999999888754
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=3e-25 Score=184.21 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=119.9
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCC-CChH
Q 041009 55 AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIW-GETI 133 (434)
Q Consensus 55 ~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~ 133 (434)
++..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+. |+.+++++|+++++++ +..|.. |+||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~ 81 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRP 81 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCH
Confidence 3778999999999999999999999999998887 7889999999999999 9999999999999887 566777 9999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009 134 LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190 (434)
Q Consensus 134 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~ 190 (434)
||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++.+++++|+++|+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999998 88999999999999999999999999998876
No 83
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=7e-27 Score=226.70 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=129.4
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCch--hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCC--CccCCCCCCCHH
Q 041009 25 NCLSETPLHVAALLGHEDFAKEILRQKPRI--AEELDSRKSSALHIASQKGYVGIVKALLQVIPDK--CSDTDVDGRNPL 100 (434)
Q Consensus 25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpL 100 (434)
+.+++||||+||..|+.++|++|++.++.. ....|..|.||||+||..|+.+++++|++++++. .+..+.+ .|||
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL 167 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF 167 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence 344679999999999999999999998732 1234567889999999999999999999999752 1233333 8999
Q ss_pred HHHHHhCCHHHHHHHHHhCCcccc-cccCCCChHHHHHH-HcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCc
Q 041009 101 HLAAMRGHIDVLEELARAKPDAAS-ARLIWGETILHLCV-KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQ 178 (434)
Q Consensus 101 ~~Aa~~g~~~~v~~Ll~~~~~~~~-~~~~~g~t~Lh~A~-~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~ 178 (434)
|+|+..|+.+++++|++++++... ..|..|.||||+|+ .+|+.+++++|++.|++ |+||||+|+..|+
T Consensus 168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~----------~~taL~~Aa~~g~ 237 (376)
T 2aja_A 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM----------LAYAEIHEFEYGE 237 (376)
T ss_dssp HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH----------HHHHHHCTTTTTT
T ss_pred HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc----------cchHHHHHHHCCC
Confidence 999999999999999999988633 26777999999999 99999999999986642 8899999999999
Q ss_pred HHHHHHhhhcccccccc
Q 041009 179 IEAIKLLTTSTAIEVNA 195 (434)
Q Consensus 179 ~~iv~~Ll~~~~~~~~~ 195 (434)
.+++++|+++++ +++.
T Consensus 238 ~evv~lL~~~ga-~~~~ 253 (376)
T 2aja_A 238 KYVNPFIARHVN-RLKE 253 (376)
T ss_dssp TTHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhcCc-cccc
Confidence 999999998875 4433
No 84
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.6e-25 Score=201.67 Aligned_cols=173 Identities=17% Similarity=0.142 Sum_probs=144.1
Q ss_pred HHHHHhcCCch--hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCc
Q 041009 44 AKEILRQKPRI--AEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPD 121 (434)
Q Consensus 44 v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~ 121 (434)
++.|++++++. .+..+..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 46778877665 2445667889999999999999999999999987 78999999999999999999999999999988
Q ss_pred ccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC-CCCCcHHHHH--HHcCcHHHHHHhhhccccccccccc
Q 041009 122 AASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD-DYGMTILHLA--VADKQIEAIKLLTTSTAIEVNAVTA 198 (434)
Q Consensus 122 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d-~~g~t~LhlA--~~~~~~~iv~~Ll~~~~~~~~~~n~ 198 (434)
+ +..|..|+||||+|+.+|+.+++++|++.|++ ++.+| .+|+||||+| +..|+.+++++|++.|+ +++..|.
T Consensus 80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga-~~~~~~~ 154 (229)
T 2vge_A 80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHGAA---IFATTLSDGATAFEKCDPYREGYADCATYLADVEQ-SMGLMNS 154 (229)
T ss_dssp T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH-HTTTSGG
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC-CcccccC
Confidence 7 67788999999999999999999999999999 78876 6999999999 99999999999999988 9999999
Q ss_pred CCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009 199 NGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229 (434)
Q Consensus 199 ~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~ 229 (434)
.|.||++.++... ..++|.+.|++
T Consensus 155 ~~~~~l~~~~~~~-------~~~~ll~~ga~ 178 (229)
T 2vge_A 155 GAVYALWDYSAEF-------GDELSFREGES 178 (229)
T ss_dssp GEEEESSCBCCSS-------TTBCCBCTTCE
T ss_pred CchHHHHHHhhcc-------ccccCcccccc
Confidence 9999988544311 12455666665
No 85
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=9.7e-24 Score=171.87 Aligned_cols=124 Identities=38% Similarity=0.566 Sum_probs=79.1
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhC
Q 041009 28 SETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRG 107 (434)
Q Consensus 28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g 107 (434)
|+||||.|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence 666666666666666666666666655 555666666666666666666666666666655 555666666666666666
Q ss_pred CHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcC
Q 041009 108 HIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMG 154 (434)
Q Consensus 108 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 154 (434)
+.+++++|++++++. ...|..|.||||+|+..|+.+++++|+++|+
T Consensus 80 ~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 80 HLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 666666666665554 4445556666666666666666666666554
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=4.9e-24 Score=176.86 Aligned_cols=124 Identities=25% Similarity=0.341 Sum_probs=69.9
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009 26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105 (434)
Q Consensus 26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~ 105 (434)
..|.||||+||..|+.++++.|++++.++ +..|..|+||||+|+..|+.+++++|++.+++. +..|..|.||||+|+.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAF 89 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 33556666666666666666666665554 455555666666666666666666666655554 4455555555555555
Q ss_pred hCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHh
Q 041009 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLEN 152 (434)
Q Consensus 106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 152 (434)
.|+.+++++|++++++. ...|.+|+||||+|+.+|+.+++++|++.
T Consensus 90 ~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 90 IGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred cCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 55555555555555544 34444555555555555555555555543
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=7.3e-24 Score=175.80 Aligned_cols=128 Identities=27% Similarity=0.356 Sum_probs=116.2
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHH
Q 041009 57 ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHL 136 (434)
Q Consensus 57 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~ 136 (434)
.....|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++++. +..|.+|.||||+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~ 86 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHL 86 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence 34567889999999999999999999999887 788999999999999999999999999998887 6678889999999
Q ss_pred HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcc
Q 041009 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTST 189 (434)
Q Consensus 137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~ 189 (434)
|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++.|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCC---CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999998 8899999999999999999999999998764
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.9e-23 Score=170.12 Aligned_cols=125 Identities=42% Similarity=0.605 Sum_probs=114.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHc
Q 041009 61 RKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKH 140 (434)
Q Consensus 61 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 140 (434)
+|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++++++. ...|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence 4899999999999999999999998887 778899999999999999999999999998887 66788899999999999
Q ss_pred CCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009 141 NQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190 (434)
Q Consensus 141 g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~ 190 (434)
|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 79 GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999999999988 78899999999999999999999999998876
No 89
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=5.6e-26 Score=220.35 Aligned_cols=207 Identities=15% Similarity=0.154 Sum_probs=151.4
Q ss_pred CCChHHHHHHHhcCCCcccccccCCCCCCHHHHHHhcCCHHHHHHHHhcCCch--hhccCCCCCcHHHHHHHcCCHHHHH
Q 041009 2 AGSVNTLLELRQQDPLIVERPTVNCLSETPLHVAALLGHEDFAKEILRQKPRI--AEELDSRKSSALHIASQKGYVGIVK 79 (434)
Q Consensus 2 ~G~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~Aa~~g~~~iv~ 79 (434)
.|+.++++.|++.+.........|..|.||||+||..|+.++|++|++++++. .+..+.+ .||||+||..|+.++++
T Consensus 102 ~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~ 180 (376)
T 2aja_A 102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLN 180 (376)
T ss_dssp HCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHH
Confidence 59999999999987632222334566889999999999999999999999752 1222222 99999999999999999
Q ss_pred HHHhhCCCCCcc--CCCCCCCHHHHHH-HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCC
Q 041009 80 ALLQVIPDKCSD--TDVDGRNPLHLAA-MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDS 156 (434)
Q Consensus 80 ~Ll~~~~~~~~~--~d~~g~tpL~~Aa-~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 156 (434)
+|++++++. +. .|..|.||||+|+ ..|+.+++++|++++. .|.||||.|+++|+.+++++|++.|++
T Consensus 181 ~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~- 250 (376)
T 2aja_A 181 RLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNR- 250 (376)
T ss_dssp HHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHH-
T ss_pred HHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcc-
Confidence 999999886 44 7888999999999 9999999999998542 278999999999999999999998865
Q ss_pred ccccCCCCCCCcHHHHHHHc---------------------------CcHHHHHHhhhccccc----ccccccCCCCHHH
Q 041009 157 ELLNAKDDYGMTILHLAVAD---------------------------KQIEAIKLLTTSTAIE----VNAVTANGFTAWD 205 (434)
Q Consensus 157 ~~~~~~d~~g~t~LhlA~~~---------------------------~~~~iv~~Ll~~~~~~----~~~~n~~g~t~l~ 205 (434)
++.+|. +++.|+.. +..+.+++|++.+.++ .....+.+.||+|
T Consensus 251 --~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~ 324 (376)
T 2aja_A 251 --LKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR 324 (376)
T ss_dssp --HHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred --cccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHH
Confidence 332221 22222222 2344555555543322 1223446678888
Q ss_pred HHHHccCCCchhHHHHHHHHcCCC
Q 041009 206 ILAQSKRDTKDWDIGELLRRAGAI 229 (434)
Q Consensus 206 la~~~~~~~~~~~i~~~L~~~g~~ 229 (434)
+|+. .+..+++++|++.|..
T Consensus 325 ~A~~----~g~~e~v~lLl~~~~v 344 (376)
T 2aja_A 325 LALR----LGNQGACALLLSIPSV 344 (376)
T ss_dssp HHHH----HTCTTHHHHHTTSHHH
T ss_pred HHHH----cCcHHHHHHHHcChHH
Confidence 8888 5567788888877643
No 90
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=1.6e-24 Score=189.74 Aligned_cols=154 Identities=16% Similarity=0.050 Sum_probs=135.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCH----HHHHHHHHhCCcccccccCCCChHHHHH
Q 041009 62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHI----DVLEELARAKPDAASARLIWGETILHLC 137 (434)
Q Consensus 62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A 137 (434)
+.++|+.|+..|+.+.++.+++.+.+. ..|..|+||||+|+.+|+. +++++|+++|+++ +.+|.+|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 568999999999999999999987543 2237799999999999975 5999999999998 67789999999999
Q ss_pred HHcCC------HHHHHHHHHhcCCCccccCCCCCCC-cHHHHHHHcC-----cHHHHHHhhh-cccccccccccCCCCHH
Q 041009 138 VKHNQ------LEALKFLLENMGDSELLNAKDDYGM-TILHLAVADK-----QIEAIKLLTT-STAIEVNAVTANGFTAW 204 (434)
Q Consensus 138 ~~~g~------~~~v~~Ll~~~~~~~~~~~~d~~g~-t~LhlA~~~~-----~~~iv~~Ll~-~~~~~~~~~n~~g~t~l 204 (434)
+..|+ .+++++|+++|++ +|.+|.+|+ ||||+|+..+ ..+++++|++ +|+ |++.+|..|.|||
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga-d~~~~d~~G~TpL 158 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL-QLLIKDKWGLTAL 158 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC-CTTCCCTTSCCHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC-CCcccCCCCCCHH
Confidence 99987 5789999999999 999999999 9999999844 4579999999 777 9999999999999
Q ss_pred HHHHHccCCCchhHHHHHHHHc
Q 041009 205 DILAQSKRDTKDWDIGELLRRA 226 (434)
Q Consensus 205 ~la~~~~~~~~~~~i~~~L~~~ 226 (434)
|+|++ .+..+++++|.+.
T Consensus 159 ~~A~~----~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 159 EFVKR----CQKPIALKMMEDY 176 (186)
T ss_dssp HHHHT----TTCHHHHHHHHHH
T ss_pred HHHHH----cCCHHHHHHHHHH
Confidence 99998 6667888888754
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.5e-23 Score=174.09 Aligned_cols=127 Identities=28% Similarity=0.315 Sum_probs=84.5
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHH
Q 041009 57 ELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHL 136 (434)
Q Consensus 57 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~ 136 (434)
.+|..|+||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|++++.+. +..|..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence 34566666666666666666666666666655 556666666666666666666666666666655 4556667777777
Q ss_pred HHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhc
Q 041009 137 CVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTS 188 (434)
Q Consensus 137 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~ 188 (434)
|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..+..+++++|.+.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 7777777777777777776 667777777777777777666666666544
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=1.7e-23 Score=182.81 Aligned_cols=140 Identities=21% Similarity=0.170 Sum_probs=110.7
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCC-CCCCCHHHHH
Q 041009 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD-VDGRNPLHLA 103 (434)
Q Consensus 25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpL~~A 103 (434)
+..|+||||.|+..|+.++++.|++ +.++ +..|..|+||||+|+..|+.+++++|++.++++ +..| ..|.||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence 4467888888888888888888888 6655 777888888888888888888888888888877 5555 7788888888
Q ss_pred HHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHH
Q 041009 104 AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIK 183 (434)
Q Consensus 104 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~ 183 (434)
+..|+.+++++|+++++++ +.+|.+|+||||+|++.++. ..+.++|++|+..|+.++++
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~~~~i~~ 176 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGLEKVIN 176 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcCHHHHHH
Confidence 8888888888888888776 56678888888888764321 34678888888888888888
Q ss_pred Hhhhc
Q 041009 184 LLTTS 188 (434)
Q Consensus 184 ~Ll~~ 188 (434)
+|.++
T Consensus 177 ~L~~~ 181 (183)
T 3deo_A 177 VLEGQ 181 (183)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 87653
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=2.1e-23 Score=190.92 Aligned_cols=139 Identities=22% Similarity=0.180 Sum_probs=88.8
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCC-CCCCCHHHHHH
Q 041009 26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTD-VDGRNPLHLAA 104 (434)
Q Consensus 26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpL~~Aa 104 (434)
..|.||||+||..|+.++++.|++ +.++ +..|..|+||||+|+..|+.+++++|++.++++ +.+| ..|.||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence 346667777777777777776666 5544 566666677777777767777777777666665 4444 56666777666
Q ss_pred HhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHH
Q 041009 105 MRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKL 184 (434)
Q Consensus 105 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~ 184 (434)
..|+.+++++|+++++++ +.+|..|+||||+|++.++ +..+.||||+|+..|+.+++++
T Consensus 120 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~--------------------~~~~~~~l~~a~~~g~~~iv~~ 178 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILK--------------------TTPKGNPMQFGRRIGLEKVINV 178 (244)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT--------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh--------------------ccCCCCHHHHHHHcChHHHHHH
Confidence 666666666666666665 4556666666666664211 1345666666666666666666
Q ss_pred hhhc
Q 041009 185 LTTS 188 (434)
Q Consensus 185 Ll~~ 188 (434)
|.++
T Consensus 179 L~~~ 182 (244)
T 3ui2_A 179 LEGQ 182 (244)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=5.1e-23 Score=194.20 Aligned_cols=139 Identities=19% Similarity=0.125 Sum_probs=108.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhhCCCCCcc-----CCCCCCCHHHHHHHh---CCHHHHHHHHHhCCcccccccCCCCh
Q 041009 61 RKSSALHIASQKGYVGIVKALLQVIPDKCSD-----TDVDGRNPLHLAAMR---GHIDVLEELARAKPDAASARLIWGET 132 (434)
Q Consensus 61 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t 132 (434)
.+.++||.|+..|+.+.++.|++.+.++... .|..|.||||+|+.. |+.+++++|+++++++ +.+|.+|+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T 228 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 228 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence 3456788888888888888888888776322 577888888888886 7888888888888876 566778888
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHc
Q 041009 133 ILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQS 210 (434)
Q Consensus 133 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~ 210 (434)
|||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..++.+++++|+++++ + .|.||+|+|+..
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga-~------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQA-G------TFAFPLHVDYSW 296 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH-H------TTSSCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-C------CCCChhHHHHhc
Confidence 88888888888888888888888 78888888888888888888888888888877 4 477888888763
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=2.1e-24 Score=197.65 Aligned_cols=172 Identities=20% Similarity=0.101 Sum_probs=144.7
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR 106 (434)
Q Consensus 27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~ 106 (434)
.+.+++.+++..|+.+.+..+...+.+ .+..|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+..
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~ 87 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGL 87 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGGSCHH----HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHH
T ss_pred CCccHHHHHHHcCCCcccccccccccc----cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHC
Confidence 355677777777776655544443333 35679999999999999999999999 7766 88999999999999999
Q ss_pred CCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhh
Q 041009 107 GHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLT 186 (434)
Q Consensus 107 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll 186 (434)
|+.+++++|+++++++....+..|+||||+|+.+|+.+++++|+++|++ ++.+|..|+||||+|+..+
T Consensus 88 g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~--------- 155 (244)
T 3ui2_A 88 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREIL--------- 155 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHH---------
T ss_pred CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHH---------
Confidence 9999999999999998544448899999999999999999999999999 8999999999999998532
Q ss_pred hcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009 187 TSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229 (434)
Q Consensus 187 ~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~ 229 (434)
.+..+.||+++|+. .+..+++++|.+.+..
T Consensus 156 ---------~~~~~~~~l~~a~~----~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 156 ---------KTTPKGNPMQFGRR----IGLEKVINVLEGQVFE 185 (244)
T ss_dssp ---------TTCCCSSHHHHHHH----HHHHHHHHHHHHHHEE
T ss_pred ---------hccCCCCHHHHHHH----cChHHHHHHHHHhccc
Confidence 13578999999999 7778899999986554
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=7.7e-23 Score=178.64 Aligned_cols=142 Identities=23% Similarity=0.188 Sum_probs=126.3
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHH
Q 041009 58 LDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLC 137 (434)
Q Consensus 58 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A 137 (434)
.|..|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+..|+.+++++|+++++++....+.+|+||||+|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 36689999999999999999999999 7766 889999999999999999999999999999998544448899999999
Q ss_pred HHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchh
Q 041009 138 VKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDW 217 (434)
Q Consensus 138 ~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~ 217 (434)
+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++ ...+.+++++++. .+..
T Consensus 118 ~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~----~~~~ 172 (183)
T 3deo_A 118 AGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILK------------------TTPKGNPMQFGRR----IGLE 172 (183)
T ss_dssp HHTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHH----HHHH
T ss_pred HhcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHH----cCHH
Confidence 999999999999999999 88999999999999987432 2457899999998 6778
Q ss_pred HHHHHHHHc
Q 041009 218 DIGELLRRA 226 (434)
Q Consensus 218 ~i~~~L~~~ 226 (434)
+++++|.+.
T Consensus 173 ~i~~~L~~~ 181 (183)
T 3deo_A 173 KVINVLEGQ 181 (183)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 899988753
No 97
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=5.1e-23 Score=170.80 Aligned_cols=128 Identities=25% Similarity=0.283 Sum_probs=114.7
Q ss_pred cCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHH
Q 041009 91 DTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTIL 170 (434)
Q Consensus 91 ~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L 170 (434)
.+|.+|.||||+|+..|+.+++++|++++++. +..|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence 57899999999999999999999999999887 67788999999999999999999999999998 899999999999
Q ss_pred HHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcC
Q 041009 171 HLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAG 227 (434)
Q Consensus 171 hlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g 227 (434)
|+|+..|+.+++++|+++|+ +++.+|.+|.||+|+|.. .+..++++++.+.+
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~tpl~~A~~----~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGA-SRNAVNIFGLRPVDYTDD----ESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCGGGGCCC----HHHHHHHSCC----
T ss_pred HHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHhh----ccHHHHHhhccccc
Confidence 99999999999999999988 999999999999999876 55566666655543
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=6.2e-23 Score=184.84 Aligned_cols=170 Identities=16% Similarity=0.168 Sum_probs=125.1
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcC--------------CchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCc
Q 041009 25 NCLSETPLHVAALLGHEDFAKEILRQK--------------PRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCS 90 (434)
Q Consensus 25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~--------------~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~ 90 (434)
+..++++.+++...|+...+..+.+.+ ....+..|..|.||||+|+..|+.+++++|++.+.++ +
T Consensus 22 d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~ 100 (222)
T 3ehr_A 22 TFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-N 100 (222)
T ss_dssp CCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-T
T ss_pred CcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCCCc-c
Confidence 444566666666666654333222111 0123455778899999999999999999999998887 7
Q ss_pred cCCCCCCCHHHHHHHhCCHHHHHHHHHh-CCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcH
Q 041009 91 DTDVDGRNPLHLAAMRGHIDVLEELARA-KPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTI 169 (434)
Q Consensus 91 ~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~ 169 (434)
.+|..|.||||+|+..|+.+++++|++. +.+. +..|.+|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||
T Consensus 101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~ 176 (222)
T 3ehr_A 101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLA 176 (222)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CccccCCCCCH
Confidence 8899999999999999999999999998 6665 67788899999999999999999999999998 88899999999
Q ss_pred HHHHHHcCcHHHHHHhhhcccccccccccCC
Q 041009 170 LHLAVADKQIEAIKLLTTSTAIEVNAVTANG 200 (434)
Q Consensus 170 LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g 200 (434)
||+|+..++.++++.|++.++ +.+..|.+|
T Consensus 177 l~~A~~~~~~~~l~~l~~~~~-~~~~~~~~~ 206 (222)
T 3ehr_A 177 FDMATNAACASLLKKKQGTDA-VRTLSNAED 206 (222)
T ss_dssp HHHCCSHHHHHHHC-----------------
T ss_pred HHHhcchhHHHHHHHHhccch-hhhccchhh
Confidence 999999999999999998877 555555443
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=1.6e-22 Score=164.52 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009 26 CLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105 (434)
Q Consensus 26 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~ 105 (434)
..|+||||+|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 34556666666666666666666655554 455555666666666666666666666555554 4555555555555555
Q ss_pred hCCHHHHHHHHHhCCcccccccCCCChHHHHH
Q 041009 106 RGHIDVLEELARAKPDAASARLIWGETILHLC 137 (434)
Q Consensus 106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A 137 (434)
.|+.+++++|++++++. ..+|.+|.||||+|
T Consensus 83 ~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADK-TVKGPDGLTAFEAT 113 (123)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHC
T ss_pred cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHh
Confidence 55555555555555544 34445555555555
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=9.2e-23 Score=183.74 Aligned_cols=136 Identities=25% Similarity=0.249 Sum_probs=113.2
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhh-CCCCCccCCCCCCCHHHHH
Q 041009 25 NCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQV-IPDKCSDTDVDGRNPLHLA 103 (434)
Q Consensus 25 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpL~~A 103 (434)
+..|.||||+||..|+.++++.|++.+.++ +.+|..|+||||+|+..|+.+++++|++. +.+. +.+|..|.||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHH
Confidence 456899999999999999999999999887 78899999999999999999999999999 6666 88999999999999
Q ss_pred HHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC
Q 041009 104 AMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKD 163 (434)
Q Consensus 104 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d 163 (434)
+..|+.+++++|++++++. +.+|.+|.||||+|+..|+.++++.+++.++...+.+..+
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 9999999999999999987 6788999999999999999999999999998855444443
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=3e-22 Score=162.90 Aligned_cols=112 Identities=27% Similarity=0.241 Sum_probs=91.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 041009 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCV 138 (434)
Q Consensus 59 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~ 138 (434)
+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence 566788888888888888888888888776 778888888888888888888888888888776 566778888888888
Q ss_pred HcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHH
Q 041009 139 KHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA 175 (434)
Q Consensus 139 ~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~ 175 (434)
..|+.+++++|+++|++ ++.+|.+|+||||+|..
T Consensus 82 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCC
T ss_pred HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCC
Confidence 88888888888888887 77888888888888843
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=182.45 Aligned_cols=126 Identities=31% Similarity=0.304 Sum_probs=78.4
Q ss_pred CCCHHHHHHHhCCHHHHHHHHHhCCccccc-----ccCCCChHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCCC
Q 041009 96 GRNPLHLAAMRGHIDVLEELARAKPDAASA-----RLIWGETILHLCVKH---NQLEALKFLLENMGDSELLNAKDDYGM 167 (434)
Q Consensus 96 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~d~~g~ 167 (434)
+.++|+.|+..|+.+.++.|++.++++... .+..|+||||+|+.. |+.+++++|++.|++ ++.+|.+|+
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---vn~~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAADGN 227 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC---TTCCCTTCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC---CCCCCCCCC
Confidence 445666666666666666666666655322 355566666666665 566666666666666 566666666
Q ss_pred cHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCC
Q 041009 168 TILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAI 229 (434)
Q Consensus 168 t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~ 229 (434)
||||+|+..|+.+++++|+++|+ +++.+|.+|.||||+|+. .+..+++++|+++|++
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~----~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRA-LVGTVNEAGETALDIARK----KHHKECEELLEQAQAG 284 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTC-CCSCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCC
Confidence 66666666666666666666655 666666666666666666 4445666666666655
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=1e-20 Score=176.45 Aligned_cols=196 Identities=23% Similarity=0.214 Sum_probs=132.9
Q ss_pred ccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHH
Q 041009 23 TVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHL 102 (434)
Q Consensus 23 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~ 102 (434)
..|..+.+.++.+...|+..+.+.+-..-+.........+.... .....-..+++...........+....++|+.
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~ 136 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCE 136 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence 45677788888888888776665554332221000001111111 11111112222222211111112223468888
Q ss_pred HHHhCCHHHHHHHHHhCCccc-----ccccCCCChHHHHHHHc---CCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHH
Q 041009 103 AAMRGHIDVLEELARAKPDAA-----SARLIWGETILHLCVKH---NQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174 (434)
Q Consensus 103 Aa~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~ 174 (434)
|+..|+.+.++.+++.+++.. ...+..|+||||+|+.+ |+.+++++|+++|++ +|.+|.+|+||||+|+
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~---in~~d~~g~TpLh~A~ 213 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTALHYCC 213 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCCCHHHHHH
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC---ccccCCCCCCHHHHHH
Confidence 888888888888888888753 33367788999999888 788889999988888 8888888999999999
Q ss_pred HcCcHHHHHHhhhcccccccccccCCCCHHHHHHHccCCCchhHHHHHHHHcCCCc
Q 041009 175 ADKQIEAIKLLTTSTAIEVNAVTANGFTAWDILAQSKRDTKDWDIGELLRRAGAIS 230 (434)
Q Consensus 175 ~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~la~~~~~~~~~~~i~~~L~~~g~~~ 230 (434)
..|+.+++++|+++|+ +++.+|.+|.||||+|+. .+..+++++|.++|+..
T Consensus 214 ~~g~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 214 LTDNAECLKLLLRGKA-SIEIANESGETPLDIAKR----LKHEHCEELLTQALSGR 264 (278)
T ss_dssp HTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCC-CCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence 9999999999988877 888888899999998888 66678888888887753
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=1.3e-20 Score=182.10 Aligned_cols=148 Identities=20% Similarity=0.126 Sum_probs=111.5
Q ss_pred ccCCCCCcHHHHHHHc-CCHHHHHHHHhhCCCCCccCC--CCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChH
Q 041009 57 ELDSRKSSALHIASQK-GYVGIVKALLQVIPDKCSDTD--VDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETI 133 (434)
Q Consensus 57 ~~d~~g~tpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 133 (434)
..+..+.||||.|+.. |+.++++.|++.++++ +..| ..|.||||+|+..|+.+++++|+++++++ +..|.+|+||
T Consensus 194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~Tp 271 (368)
T 3jue_A 194 LGSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGP 271 (368)
T ss_dssp ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred cccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence 3455678899999998 9999999999998887 6666 78999999999999999999999998887 6778889999
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccc--cccccccCCCCHHHHHHH
Q 041009 134 LHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAI--EVNAVTANGFTAWDILAQ 209 (434)
Q Consensus 134 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~--~~~~~n~~g~t~l~la~~ 209 (434)
||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|++.+.. +....+..+.|+++++..
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHHHHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 9999999999999999999988 888999999999999999999999999877642 334556788899998766
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=4e-20 Score=142.42 Aligned_cols=92 Identities=37% Similarity=0.566 Sum_probs=74.5
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHh
Q 041009 27 LSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMR 106 (434)
Q Consensus 27 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~ 106 (434)
+|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence 3778888888888888888888888776 777888888888888888888888888888776 67788888888888888
Q ss_pred CCHHHHHHHHHhCC
Q 041009 107 GHIDVLEELARAKP 120 (434)
Q Consensus 107 g~~~~v~~Ll~~~~ 120 (434)
|+.+++++|+++++
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 88888888887765
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=3.6e-20 Score=187.07 Aligned_cols=136 Identities=21% Similarity=0.185 Sum_probs=79.3
Q ss_pred cHHHHHHHcCCHHHHHHHHhhCCCCCccC------CCCCCCHHHHHHH---hCCHHHHHHHHHhCCcccccccCCCChHH
Q 041009 64 SALHIASQKGYVGIVKALLQVIPDKCSDT------DVDGRNPLHLAAM---RGHIDVLEELARAKPDAASARLIWGETIL 134 (434)
Q Consensus 64 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~------d~~g~tpL~~Aa~---~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L 134 (434)
+.||.|+..|+.+.++.|++.|+++ +.. |..|.||||+|+. .|+.+++++|+++++++ +.+|.+|+|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHH
Confidence 5566666666666666666666654 333 5566666666644 66666666666666665 45566666666
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhcccccccccccCCCCHHH
Q 041009 135 HLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTAIEVNAVTANGFTAWD 205 (434)
Q Consensus 135 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~ 205 (434)
|+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|+ +++..+....+++.
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga-~~~~~~~h~~~~~~ 278 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQA-GTFAFPLHVDYSWV 278 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCC---CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---------------
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC-CCCCCcceeecccc
Confidence 666666666666666666666 66666666666666666666666666666666 65554333333333
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=3.1e-20 Score=179.34 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=77.8
Q ss_pred CCHHHHHHhc-CCHHHHHHHHhcCCchhhccC--CCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHH
Q 041009 29 ETPLHVAALL-GHEDFAKEILRQKPRIAEELD--SRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAM 105 (434)
Q Consensus 29 ~t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~ 105 (434)
.|+||.|+.. |+.++++.|+++++++ +..| ..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+.
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATI 277 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence 3566666666 6666666666666655 4444 56666666666666666666666666655 5566666666666666
Q ss_pred hCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHH
Q 041009 106 RGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAV 174 (434)
Q Consensus 106 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~ 174 (434)
.|+.+++++|+++++++ +..|.+|.||||+|+..|+.+++++|++.+.........+..+.|+++++.
T Consensus 278 ~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 278 LGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345 (368)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred cCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence 66666666666666655 455566666666666666666666666655432223334445556655544
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=8.5e-20 Score=184.32 Aligned_cols=136 Identities=20% Similarity=0.177 Sum_probs=107.5
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCchhhcc------CCCCCcHHHHHHH---cCCHHHHHHHHhhCCCCCccCCCCCCC
Q 041009 28 SETPLHVAALLGHEDFAKEILRQKPRIAEEL------DSRKSSALHIASQ---KGYVGIVKALLQVIPDKCSDTDVDGRN 98 (434)
Q Consensus 28 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~Aa~---~g~~~iv~~Ll~~~~~~~~~~d~~g~t 98 (434)
..+.||.|+..|+.+.++.|++.|+++ +.. |..|.||||+||. .|+.+++++|++.|+++ +.+|.+|.|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCc
Confidence 346799999999999999999998876 444 7889999999966 88899999999998887 788889999
Q ss_pred HHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHH
Q 041009 99 PLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA 175 (434)
Q Consensus 99 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~ 175 (434)
|||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+.+++++|++.|++ .+. +|+|.+..
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~---~~~------~~~h~~~~ 276 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG---TFA------FPLHVDYS 276 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC---CCC------Ccceeecc
Confidence 999999999999999999998887 66788899999999999999999999998887 333 57776653
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=2.6e-19 Score=166.88 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=105.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhhCCCCC-----ccCCCCCCCHHHHHHHh---CCHHHHHHHHHhCCcccccccCCC
Q 041009 59 DSRKSSALHIASQKGYVGIVKALLQVIPDKC-----SDTDVDGRNPLHLAAMR---GHIDVLEELARAKPDAASARLIWG 130 (434)
Q Consensus 59 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g 130 (434)
+....++|+.|+..|+.+.++.+++.+.+.. +..|..|.||||+|+.. |+.+++++|+++++++ +.+|.+|
T Consensus 127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g 205 (278)
T 1dcq_A 127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKG 205 (278)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTC
T ss_pred cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCC
Confidence 3445678888888888888888888887752 33477888888888888 7888888888888876 5667788
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcCcHHHHHHhhhccc
Q 041009 131 ETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADKQIEAIKLLTTSTA 190 (434)
Q Consensus 131 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~~~~iv~~Ll~~~~ 190 (434)
+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|+++++
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 8888888888888888888888888 78888888888888888888888888888876
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=2.2e-19 Score=138.24 Aligned_cols=91 Identities=40% Similarity=0.594 Sum_probs=53.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcC
Q 041009 62 KSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHN 141 (434)
Q Consensus 62 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g 141 (434)
|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++. +.+|.+|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence 556666666666666666666665554 555566666666666666666666666655554 444555555555555555
Q ss_pred CHHHHHHHHHhcC
Q 041009 142 QLEALKFLLENMG 154 (434)
Q Consensus 142 ~~~~v~~Ll~~~~ 154 (434)
+.+++++|++.|+
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 5555555555554
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.5e-19 Score=144.91 Aligned_cols=108 Identities=36% Similarity=0.436 Sum_probs=71.6
Q ss_pred CCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHH
Q 041009 92 TDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILH 171 (434)
Q Consensus 92 ~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~Lh 171 (434)
+|.+|.||||+|+..|+.++++.|++++++. +..|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPEH 80 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCTTH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHHH
Confidence 5566666666666666666666666666554 44556666777777777777777777776666 6666777777777
Q ss_pred HHHHcCcHHHHHHhhhcccccccccccCCCCHH
Q 041009 172 LAVADKQIEAIKLLTTSTAIEVNAVTANGFTAW 204 (434)
Q Consensus 172 lA~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l 204 (434)
+|+..++.+++++|+++|+ +++..+..|.||-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga-~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGA-DVNARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSS-SHHHHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCC-CCCcCCccccccc
Confidence 7777777777777777766 7777777776663
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=1.9e-19 Score=144.33 Aligned_cols=107 Identities=30% Similarity=0.379 Sum_probs=64.5
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHH
Q 041009 24 VNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLA 103 (434)
Q Consensus 24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A 103 (434)
.|.+|.||||+|+..|+.++++.|+++++++ +..|..|.||||+|+..|+.+++++|++.+++. +.+|..|.||||+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA 82 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence 3555666666666666666666666666654 555666666666666666666666666666554 55566666666666
Q ss_pred HHhCCHHHHHHHHHhCCcccccccCCCChH
Q 041009 104 AMRGHIDVLEELARAKPDAASARLIWGETI 133 (434)
Q Consensus 104 a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~ 133 (434)
+..|+.+++++|+++++++ +..+..|.+|
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADV-NARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred HHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence 6666666666666666555 3344444443
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=2.5e-17 Score=130.97 Aligned_cols=92 Identities=24% Similarity=0.326 Sum_probs=69.3
Q ss_pred cccCCCCCCHHHHHHhcCCHHHHHHHHhcCCchhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHH
Q 041009 22 PTVNCLSETPLHVAALLGHEDFAKEILRQKPRIAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLH 101 (434)
Q Consensus 22 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~ 101 (434)
...|.+|.||||+|+..|+.++++.|++.++++ +..|..|+||||+|+..|+.+++++|++.+++. +.+|..|.||||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHH
Confidence 345667788888888888888888888877766 666778888888888888888888888887776 677777888888
Q ss_pred HHHHhCCHHHHHHH
Q 041009 102 LAAMRGHIDVLEEL 115 (434)
Q Consensus 102 ~Aa~~g~~~~v~~L 115 (434)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 88888888877765
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=1e-16 Score=127.31 Aligned_cols=92 Identities=27% Similarity=0.403 Sum_probs=60.6
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCCccCCCCCCCHHHHHHHhCCHHHHHHHHHhCCcccccccCCCChHHH
Q 041009 56 EELDSRKSSALHIASQKGYVGIVKALLQVIPDKCSDTDVDGRNPLHLAAMRGHIDVLEELARAKPDAASARLIWGETILH 135 (434)
Q Consensus 56 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh 135 (434)
...|.+|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++. +..|..|+||||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHH
Confidence 445667777777777777777777777776665 566667777777777777777777777666654 445666666666
Q ss_pred HHHHcCCHHHHHHH
Q 041009 136 LCVKHNQLEALKFL 149 (434)
Q Consensus 136 ~A~~~g~~~~v~~L 149 (434)
+|+.+|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 66666666666654
No 115
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=61.68 E-value=72 Score=26.81 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 041009 307 AASSFVVWNTIGFLASLSLILLLIIDLP 334 (434)
Q Consensus 307 ~f~~f~~~~~~a~~~S~~~~~~~~~~~~ 334 (434)
...+|.++-++-+..-+.++++-.+++|
T Consensus 59 LLi~fav~Ttllv~vml~AlMIsTcILP 86 (214)
T 4hkr_A 59 MLIAFAICTTLLVAVHMLALMISTCILP 86 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6777877776666655555555444444
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=40.01 E-value=17 Score=33.75 Aligned_cols=164 Identities=10% Similarity=0.083 Sum_probs=79.4
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcC-Cc-hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhC-CCC-CccCCCCCCCH
Q 041009 24 VNCLSETPLHVAALLGHEDFAKEILRQK-PR-IAEELDSRKSSALHIASQKGYVGIVKALLQVI-PDK-CSDTDVDGRNP 99 (434)
Q Consensus 24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~-~~-~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~-~~~-~~~~d~~g~tp 99 (434)
.|.+|...+......|..+....+++.- +. ..-..|..|.-.+..+......+-...+++.- +.. .-..|..|...
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~V 148 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHV 148 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHH
Confidence 4666666666666666666555555431 11 11234666666666666665554444444331 111 12345566555
Q ss_pred HHHHHHhCCHHHHHHHHHhCCcc--cccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHHcC
Q 041009 100 LHLAAMRGHIDVLEELARAKPDA--ASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVADK 177 (434)
Q Consensus 100 L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~~~ 177 (434)
+......+..+..+.+++.-... .-..+..|...+.-+.+....+-...+++.-......-.+|.+|+-.+......+
T Consensus 149 iQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~ 228 (351)
T 3gvo_A 149 VQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHG 228 (351)
T ss_dssp HHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhC
Confidence 55555555444333443321111 1122344555555555544433322222211111112245777887777777777
Q ss_pred cHHHHHHhhh
Q 041009 178 QIEAIKLLTT 187 (434)
Q Consensus 178 ~~~iv~~Ll~ 187 (434)
..+..+.+++
T Consensus 229 ~~~~~~~i~~ 238 (351)
T 3gvo_A 229 RPEDKSKIVS 238 (351)
T ss_dssp CHHHHHHHHH
T ss_pred chhhHHHHHH
Confidence 6665555543
No 117
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.75 E-value=1.3e+02 Score=21.00 Aligned_cols=7 Identities=14% Similarity=0.534 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 041009 398 SRLMVMM 404 (434)
Q Consensus 398 ~~~~~~~ 404 (434)
.+++..+
T Consensus 32 wk~~~~i 38 (79)
T 2knc_B 32 WKLLITI 38 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 118
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=24.50 E-value=82 Score=29.00 Aligned_cols=157 Identities=10% Similarity=0.098 Sum_probs=86.0
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcC-Cc-hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCCCCC--ccCCCCCCCH
Q 041009 24 VNCLSETPLHVAALLGHEDFAKEILRQK-PR-IAEELDSRKSSALHIASQKGYVGIVKALLQVIPDKC--SDTDVDGRNP 99 (434)
Q Consensus 24 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~-~~-~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~--~~~d~~g~tp 99 (434)
.+.+|--.+..+......+-...+++.- +. ..-..|..|+..+......+..+..+.+++.-.... -..+..|...
T Consensus 105 ~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~V 184 (351)
T 3gvo_A 105 LQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRV 184 (351)
T ss_dssp TSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHH
T ss_pred hCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHH
Confidence 3444555555555555544444444321 11 112347778777777766666555555555422110 1234556555
Q ss_pred HHHHHHhCCH----HHHHHHHHhCCcccccccCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCCCcHHHHHHH
Q 041009 100 LHLAAMRGHI----DVLEELARAKPDAASARLIWGETILHLCVKHNQLEALKFLLENMGDSELLNAKDDYGMTILHLAVA 175 (434)
Q Consensus 100 L~~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~LhlA~~ 175 (434)
+..+...... .+++.|..+. ..-..|.+|+-.+....+.+..+.-+.+++.-...-.--..++.|...+.-+..
T Consensus 185 vq~~le~~~~~~~~~ii~~l~~~~--~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~ 262 (351)
T 3gvo_A 185 IQRILEHCTAEQTLPILEELHQHT--EQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 262 (351)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTH--HHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHhhhH--HhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5555555443 3444443321 223567889999999999998888777776543221122356677777777776
Q ss_pred cCcHHHH
Q 041009 176 DKQIEAI 182 (434)
Q Consensus 176 ~~~~~iv 182 (434)
.+..+.-
T Consensus 263 ~~~~~~r 269 (351)
T 3gvo_A 263 HASRAER 269 (351)
T ss_dssp HSCHHHH
T ss_pred hCCHHHH
Confidence 6655433
No 119
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=23.42 E-value=6e+02 Score=25.98 Aligned_cols=54 Identities=19% Similarity=0.073 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041009 316 TIGFLASLSLILLLIIDLPI-NRILFAWILAWIMSLAIVAMAITYIVSIALIGDP 369 (434)
Q Consensus 316 ~~a~~~S~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 369 (434)
+++.++|+..+++.-..... +..-.+..+....|++.+-+.+++....+..+|.
T Consensus 332 a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~v~~~~~~~~~l~~ 386 (766)
T 4a01_A 332 SVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPT 386 (766)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhheeEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45555565444433211111 1122334555555655554544444445555553
Done!