BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041010
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 131/300 (43%), Gaps = 15/300 (5%)
Query: 1 MKVTRLICGGFVLAFRVNHTMCDAFGFVQFLKAMEEMAWDNAKAPSLLPIWQRELLNARN 60
++VT CGG L + H D F + F+ + +MA +L P R LL AR+
Sbjct: 137 LQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA--RGLDVTLPPFIDRTLLRARD 194
Query: 61 PPQISCVHHEYDQIDPIKATLRTKNPNDLDHK--SLFFGPKEILSL---RNQLPPHLKNC 115
PPQ H EY +K + +T + + S+F +E +S +++ + +
Sbjct: 195 PPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQISALKAKSKEDGNTISY 254
Query: 116 TTFELLTACIWRCRTIALGLDPNEIVRVSFTFNIRGKRFNMQIPQGYYGNAFVFPAVCSR 175
+++E+L +WRC A GL+ ++ ++ + R R +P GY+GN +
Sbjct: 255 SSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRA-RLRPSLPPGYFGNVIFTATPIAI 313
Query: 176 VDALCGSPLGYAVELVKEGKAKVSEEYIRSVADLMVTRGRPVPTTMGDLYFI-----VSD 230
L P+ YA + + A++ +Y+RS D + + G F ++
Sbjct: 314 AGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITS 373
Query: 231 TTRTGFEEIDFGWGKPMFAGIAGCALFISFYVNYQKKNDGECGIVVPIRLPFSAMERFQE 290
R + DFGWG+P+F G G A ++ NDG + V I L M+ FQ
Sbjct: 374 WVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGS--MSVAISLQGEHMKLFQS 431
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 15/300 (5%)
Query: 1 MKVTRLICGGFVLAFRVNHTMCDAFGFVQFLKAMEEMAWDNAKAPSLLPIWQRELLNARN 60
++VT CGG L + H D F + F+ + +MA +L P R LL AR+
Sbjct: 140 LQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA--RGLDVTLPPFIDRTLLRARD 197
Query: 61 PPQISCVHHEYDQIDPIKATLRTKNPNDLDHK--SLFFGPKEILSL---RNQLPPHLKNC 115
PPQ H EY + + +T + + S+F +E +S +++ + +
Sbjct: 198 PPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISY 257
Query: 116 TTFELLTACIWRCRTIALGLDPNEIVRVSFTFNIRGKRFNMQIPQGYYGNAFVFPAVCSR 175
+++E+L +WRC A GL+ ++ ++ + R R +P GY+GN +
Sbjct: 258 SSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRA-RLRPSLPPGYFGNVIFTATPIAI 316
Query: 176 VDALCGSPLGYAVELVKEGKAKVSEEYIRSVADLMVTRGRPVPTTMGDLYFI-----VSD 230
L P+ YA + + A++ +Y+RS D + + G F ++
Sbjct: 317 AGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITS 376
Query: 231 TTRTGFEEIDFGWGKPMFAGIAGCALFISFYVNYQKKNDGECGIVVPIRLPFSAMERFQE 290
R + DFGWG+P+F G G A ++ NDG + V I L M+ FQ
Sbjct: 377 WVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGS--MSVAISLQGEHMKLFQS 434
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 129/300 (43%), Gaps = 15/300 (5%)
Query: 1 MKVTRLICGGFVLAFRVNHTMCDAFGFVQFLKAMEEMAWDNAKAPSLLPIWQRELLNARN 60
++VT GG L + H D F + F+ + +MA +L P R LL AR+
Sbjct: 140 LQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMA--RGLDVTLPPFIDRTLLRARD 197
Query: 61 PPQISCVHHEYDQIDPIKATLRTKNPNDLDHK--SLFFGPKEILSL---RNQLPPHLKNC 115
PPQ H EY + + +T + + S+F +E +S +++ + +
Sbjct: 198 PPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISY 257
Query: 116 TTFELLTACIWRCRTIALGLDPNEIVRVSFTFNIRGKRFNMQIPQGYYGNAFVFPAVCSR 175
+++E+L +WRC A GL+ ++ ++ + R R +P GY+GN +
Sbjct: 258 SSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRA-RLRPSLPPGYFGNVIFTATPIAI 316
Query: 176 VDALCGSPLGYAVELVKEGKAKVSEEYIRSVADLMVTRGRPVPTTMGDLYFI-----VSD 230
L P+ YA + + A++ +Y+RS D + + G F ++
Sbjct: 317 AGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITS 376
Query: 231 TTRTGFEEIDFGWGKPMFAGIAGCALFISFYVNYQKKNDGECGIVVPIRLPFSAMERFQE 290
R + DFGWG+P+F G G A ++ NDG + V I L M+ FQ
Sbjct: 377 WVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGS--MSVAISLQGEHMKLFQS 434
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 112/264 (42%), Gaps = 31/264 (11%)
Query: 1 MKVTRLICGGFVLAFRVNHTMCDAFGFVQFLKAMEEMAWDNAKAPSLLPIWQRELLN-AR 59
++VT G + +H + DA FLKA +A S L R L +
Sbjct: 152 VQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRII 211
Query: 60 NPPQISCVHHEYDQIDPIKATLRTKN---PNDLDHKSLFFGPKEILSLRNQLP---PHLK 113
P + + + +++ T++ P+D + I L++++ P L+
Sbjct: 212 KYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLE 271
Query: 114 NCTTFELLTACIWRCRTIALGLDPNEIVRVSFTFNI-RGKRFNMQIPQGYYGNAFVFPAV 172
++F + A IW C + N+ +++ F F I R R IP Y+GN A
Sbjct: 272 YVSSFTVACAYIWSC----IAKSRNDKLQL-FGFPIDRRARMKPPIPTAYFGNCVGGCAA 326
Query: 173 CSRVDALCGSPLGY--AVELVKEGKAKVSEEY--------IRSVADLMVTRGRPVPTTMG 222
++ + L G G+ A +L+ E K +Y + S DL V+ G +PTTM
Sbjct: 327 IAKTNLLIGKE-GFITAAKLIGENLHKTLTDYKDGVLKDDMESFNDL-VSEG--MPTTMT 382
Query: 223 DLYFIVSDTTRTGFEEIDFGWGKP 246
VS T + F ++DFGWGKP
Sbjct: 383 ----WVSGTPKLRFYDMDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 29/263 (11%)
Query: 1 MKVTRLICGGFVLAFRVNHTMCDAFGFVQFLKAMEEMAWDNAKAPSLLPIWQRELLN-AR 59
++VT G + +H + DA FLKA +A S L R L +
Sbjct: 152 VQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRII 211
Query: 60 NPPQISCVHHEYDQIDPIKATLRTKN---PNDLDHKSLFFGPKEILSLRNQLP---PHLK 113
P + + + +++ T++ P+D + I L++++ P L+
Sbjct: 212 KYPXLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLE 271
Query: 114 NCTTFELLTACIWRCRTIALGLDPNEIVRVSFTFNI-RGKRFNMQIPQGYYGNAFVFPAV 172
++F + A IW C + N+ +++ F F I R R IP Y+GN A
Sbjct: 272 YVSSFTVACAYIWSC----IAKSRNDKLQL-FGFPIDRRARXKPPIPTAYFGNCVGGCAA 326
Query: 173 CSRVDALCGSPLGY--AVELVKEGKAKVSEEYIRSVA-------DLMVTRGRPVPTTMGD 223
++ + L G G+ A +L+ E K +Y V + +V+ G P T
Sbjct: 327 IAKTNLLIGKE-GFITAAKLIGENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXTW-- 383
Query: 224 LYFIVSDTTRTGFEEIDFGWGKP 246
VS T + F + DFGWGKP
Sbjct: 384 ----VSGTPKLRFYDXDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 100/261 (38%), Gaps = 22/261 (8%)
Query: 1 MKVTRLICGGFVLAFRVNHTMCDAFGFVQFLKA---MEEMAWDNA-KAPSLLPIWQRELL 56
++VT G + F +H D V+F++A + + D A +P + R ++
Sbjct: 147 IQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVI 206
Query: 57 NARNPPQISCVHHEYDQIDPIKATLRTKNPNDLDHKSLFFGPKEILSLRNQL---PPHLK 113
N S + +E + P D + +I L+N + P L
Sbjct: 207 KDPNGVGXS-IWNEXKKYKHXXKXSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLT 265
Query: 114 NCTTFELLTACIWRCRTIALGLDPNEIVRVSFTF-----NIRGKRFNMQIPQGYYGNAFV 168
+ T+F + A +W C + EI F + R + FN +P Y+GNA V
Sbjct: 266 HVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQ-FNPPLPPSYFGNALV 324
Query: 169 -FPAVCSRVDALCGSPLGYAVELVKEG--KAKVSEEYIRSVADLMVTRGRPVPTTMGDLY 225
+ A +VD AVEL+ E K EE+I S + ++
Sbjct: 325 GYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKEYDKVDAKRSLS--- 381
Query: 226 FIVSDTTRTGFEEIDFGWGKP 246
V+ + + DFGWG+P
Sbjct: 382 --VAGSPKLDLYAADFGWGRP 400
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 41/260 (15%)
Query: 1 MKVTRLICGGFVLAFRVNHTMCDAFGFVQFLKAMEEMAWDNAKAPSLLPIWQRELLNARN 60
+K++ CGG + ++H + D FL A A + +LP + L AR+
Sbjct: 142 VKISFFECGGTAIGVNLSHKIADVLSLATFLNAW--TATCRGETEIVLPNFD---LAARH 196
Query: 61 PPQISCVHHEYDQIDPIKATLRTKNPNDLDHKSLFFGPKEILSLRNQLPP--HLKNCTTF 118
P + P + +N + K F ++I +LR Q KN +
Sbjct: 197 FPPVDNT--------PSPELVPDEN---VVMKRFVFDKEKIGALRAQASSASEEKNFSRV 245
Query: 119 ELLTACIWRCR---TIALGLDPNEIVRVSFTFNIRGKRFNMQIPQGYYGN--AFVFPAVC 173
+L+ A IW+ T A N+ V V N+R R N +P GN +F AV
Sbjct: 246 QLVVAYIWKHVIDVTRAKYGAKNKFVVVQ-AVNLRS-RMNPPLPHYAMGNIATLLFAAVD 303
Query: 174 SRVDA----LCGSPLGYAVELVKEGKAKVSEEYIRSVADLMVTRGRPVPTTMGDLYFIVS 229
+ D L G PL ++E K +++ + M P + L F +
Sbjct: 304 AEWDKDFPDLIG-PLRTSLE-------KTEDDHNHELLKGMTCLYELEPQEL--LSF--T 351
Query: 230 DTTRTGFEEIDFGWGKPMFA 249
R GF ++DFGWGKP+ A
Sbjct: 352 SWCRLGFYDLDFGWGKPLSA 371
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 240 DFGWGKPMFAG-----IAGCALFISFYVNYQKKN 268
D GWGK ++ IAGCA+F+ Y ++ KN
Sbjct: 274 DSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKN 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,066,065
Number of Sequences: 62578
Number of extensions: 371499
Number of successful extensions: 1351
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 10
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)