BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041011
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
VP S+DWR+KGAVTS+K+QG EGI QI + L+ LSEQ+L+DC ++
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC--GREHAAAAKISSYEVLPSGDE 219
N GC G D AF++I + GI TEA+YPY G+C +E+A A I +E +P DE
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
ALLKAV+ QPVS+ I+ G DF+ Y G+F G CGT+LDH V I+G+GTT DGTKYW +
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTV 181
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
KNSWG WGE GY+R++R EGLCGI +A+YPI
Sbjct: 182 KNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 140/223 (62%), Gaps = 9/223 (4%)
Query: 99 LTQVPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS 158
++ +P S+DWR+KGAVT +K+QG EGI I +G+L+ LSEQ+L+DC
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 159 SNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAA-----AAKISSYEV 213
+ N GC G D AF+YI N G+ TEA YPY +G+C AA I ++
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQD 120
Query: 214 LPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDG 273
+P+ E+ L +AV+ QPVS+ +E +G+ F Y G+F G CGT+LDH V ++G+G EDG
Sbjct: 121 VPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDG 180
Query: 274 TKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPI 312
YW +KNSWG +WGE GY+R+++D GLCGI +A+YP+
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 172/305 (56%), Gaps = 19/305 (6%)
Query: 16 WMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGTNQFSDLTNAE 75
WM H + Y++ EK RF+IFK NL YID+ N +Y LG N+F+DL+N E
Sbjct: 25 WMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-------NNSYWLGLNEFADLSNDE 77
Query: 76 FRASYAGNSMAITSQHS---SFKYQNLTQVPTSMDWREKGAVTSIKNQGGXXXXXXXXXX 132
F Y G+ + T + S F +++ +P ++DWR+KGAVT +++QG
Sbjct: 78 FNEKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAV 137
Query: 133 XXXEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYH 192
EGI +I +G L+ LSEQ+L+DC + GC G A +Y+ KN GI + YPY
Sbjct: 138 ATVEGINKIRTGKLVELSEQELVDCERRSH-GCKGGYPPYALEYVAKN-GIHLRSKYPYK 195
Query: 193 QVQGSCGREHAAAAKISSYEV--LPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIF 250
QG+C + + + V + +E LL A++ QPVS+ +E G+ F+ YKGGIF
Sbjct: 196 AKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF 255
Query: 251 NGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQR----DEGLCGIGT 306
G CGT++D AVT +G+G + LIKNSWG WGE GY+RI+R G+CG+
Sbjct: 256 EGPCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYK 314
Query: 307 QAAYP 311
+ YP
Sbjct: 315 SSYYP 319
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 172/315 (54%), Gaps = 26/315 (8%)
Query: 9 IAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGTNQF 68
+ + E WM +H + YK+ EK RF+IFK NL+YID+ N +Y LG N F
Sbjct: 62 LIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-------NNSYWLGLNVF 114
Query: 69 SDLTNAEFRASYAGNSMAITSQHSSFKYQNL-----TQVPTSMDWREKGAVTSIKNQGGX 123
+D++N EF+ Y G S+A + Y+ + +P +DWR+KGAVT +KNQG
Sbjct: 115 ADMSNDEFKEKYTG-SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSC 173
Query: 124 XXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGI 183
E I +I +GNL SEQ+LLDC + GC G A + ++ GI
Sbjct: 174 GSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR-SYGCNGGYPWSALQ-LVAQYGI 231
Query: 184 ATEADYPYHQVQGSC-GREHAA-AAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQD 241
YPY VQ C RE AAK + +E ALL +++ QPVS+ +E G+D
Sbjct: 232 HYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKD 291
Query: 242 FKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQR---- 297
F+ Y+GGIF G CG ++DHAV +G+G Y LI+NSWG WGE GY+RI+R
Sbjct: 292 FQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILIRNSWGTGWGENGYIRIKRGTGN 346
Query: 298 DEGLCGIGTQAAYPI 312
G+CG+ T + YP+
Sbjct: 347 SYGVCGLYTSSFYPV 361
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 138/216 (63%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P S+DWRE GAV +KNQGG EGI QI +G+LI LSEQQL+DC++
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT-A 61
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQ 220
N GC G + AF++I+ N GI +E YPY G C +A I SYE +PS +EQ
Sbjct: 62 NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNEQ 121
Query: 221 ALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIK 280
+L KAV+ QPVS+ ++ G+DF+ Y+ GIF G C +HA+T++G+GT D +W++K
Sbjct: 122 SLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTEND-KDFWIVK 180
Query: 281 NSWGDTWGEAGYMRIQRD----EGLCGIGTQAAYPI 312
NSWG WGE+GY+R +R+ +G CGI A+YP+
Sbjct: 181 NSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 137/217 (63%), Gaps = 7/217 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR GAV IK+QG EGI +I++G+LI LSEQ+L+DC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 162 NS-GCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGD 218
N+ GC G F++II N GI TEA+YPY +G C + I +YE +P +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 219 EQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWL 278
E AL AV+ QPVS+ +E G +F++Y GIF G CGT +DHAVTI+G+G TE G YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYG-TEGGIDYWI 179
Query: 279 IKNSWGDTWGEAGYMRIQRD---EGLCGIGTQAAYPI 312
+KNSWG TWGE GYMRIQR+ G CGI +A+YP+
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 136/217 (62%), Gaps = 7/217 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR GAV IK+QG EGI +I++G+LI LSEQ+L+DC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 162 NS-GCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGD 218
N+ GC G F++II N GI TEA+YPY +G C + I +YE +P +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 219 EQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWL 278
E AL AV+ QPVS+ +E G +F++Y GIF G CGT +DHAVTI+G+G TE G YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYG-TEGGIDYWI 179
Query: 279 IKNSWGDTWGEAGYMRIQRD---EGLCGIGTQAAYPI 312
+KNSWG TWGE GYMRIQR+ G CGI +A+YP+
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 130/212 (61%), Gaps = 9/212 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR+KGAVT +KNQG E I QI +GNLI LSEQQL+DC+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQA 221
N GC G A++YII N GI TEA+YPY VQG C R +I Y+ +P +E A
Sbjct: 60 NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPC-RAAKKVVRIDGYKGVPHCNENA 118
Query: 222 LLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKN 281
L KAV+ QP + I+ + + F++YK GIF+G CGT+L+H V I+G+ YW+++N
Sbjct: 119 LKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWKD-----YWIVRN 173
Query: 282 SWGDTWGEAGYMRIQR--DEGLCGIGTQAAYP 311
SWG WGE GY+R++R GLCGI YP
Sbjct: 174 SWGRYWGEQGYIRMKRVGGCGLCGIARLPYYP 205
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 129/217 (59%), Gaps = 7/217 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P+ +DWR GAV IK+QG EGI +I +G LI LSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 162 NS-GCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG--REHAAAAKISSYEVLPSGD 218
N+ GC G F++II N GI TE +YPY G C ++ I +YE +P +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 219 EQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWL 278
E AL AV+ QPVS+ ++ G FK Y GIF G CGT +DHAVTI+G+G TE G YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYG-TEGGIDYWI 179
Query: 279 IKNSWGDTWGEAGYMRIQRD---EGLCGIGTQAAYPI 312
+KNSW TWGE GYMRI R+ G CGI T +YP+
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 126/212 (59%), Gaps = 9/212 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR KGAV +KNQG E I QI +GNLI LSEQQL+DCS
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQA 221
N GC G D A++YII N GI TEA+YPY QG C R +I + +P +E A
Sbjct: 60 NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPC-RAAKKVVRIDGCKGVPQCNENA 118
Query: 222 LLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKN 281
L AV+ QP + I+ + + F++YKGGIF G CGT+L+H V I+G+ G YW+++N
Sbjct: 119 LKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGY-----GKDYWIVRN 173
Query: 282 SWGDTWGEAGYMRIQR--DEGLCGIGTQAAYP 311
SWG WGE GY R++R GLCGI YP
Sbjct: 174 SWGRHWGEQGYTRMKRVGGCGLCGIARLPFYP 205
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 130/217 (59%), Gaps = 7/217 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P+ +DWR GAV IK+QG EGI +I+SG+LI LSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 162 NS-GCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC--GREHAAAAKISSYEVLPSGD 218
N+ GC G F++II + GI TE +YPY G C + I +YE +P +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 219 EQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWL 278
E AL AV+ QPVS+ ++ G FK Y GIF G CGT +DHA+ I+G+G TE G YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYG-TEGGVDYWI 179
Query: 279 IKNSWGDTWGEAGYMRIQRD---EGLCGIGTQAAYPI 312
+KNSW TWGE GYMRI R+ G CGI T +YP+
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 128/212 (60%), Gaps = 9/212 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR+KGAVT +KNQG E I QI +GNLI LSEQ+L+DC
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQA 221
N GC+ G A++YII N GI T+A+YPY VQG C + + I Y +P +E A
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC-QAASKVVSIDGYNGVPFCNEXA 118
Query: 222 LLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKN 281
L +AV++QP ++ I+ + F+ Y GIF+G CGT+L+H VTI+G+ YW+++N
Sbjct: 119 LKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY-----QANYWIVRN 173
Query: 282 SWGDTWGEAGYMRIQR--DEGLCGIGTQAAYP 311
SWG WGE GY+R+ R GLCGI YP
Sbjct: 174 SWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 6/214 (2%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P+ +DWR KGAV SIKNQ E I +I +G LI LSEQ+L+DC +
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT-A 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQA 221
+ GC G + AF+YII N GI T+ +YPY VQGSC I+ ++ + +E A
Sbjct: 60 SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNESA 119
Query: 222 LLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKN 281
L AV+ QPVS+ +E G F++Y GIF G CGT +H V I+G+G T+ G YW+++N
Sbjct: 120 LQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYG-TQSGKNYWIVRN 178
Query: 282 SWGDTWGEAGYMRIQRD----EGLCGIGTQAAYP 311
SWG WG GY+ ++R+ GLCGI +YP
Sbjct: 179 SWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP 212
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 132/216 (61%), Gaps = 13/216 (6%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P S+DWREKGAVT +KNQ EGI +I +G LI LSEQ+LLDC +
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAK--ISSYEVLPSGDEQ 220
GC G + +Y++ N G+ TE +YPY + QG C + K I+ Y+ +P+ DE
Sbjct: 62 -GCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEI 119
Query: 221 ALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIK 280
+L++A++ QPVS+ + G+ F+ YKGGI+ G CGT DHAVT +G+G T Y L+K
Sbjct: 120 SLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT-----YLLLK 174
Query: 281 NSWGDTWGEAGYMRIQ----RDEGLCGIGTQAAYPI 312
NSWG WGE GY+RI+ R +G CG+ T + +PI
Sbjct: 175 NSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 131/216 (60%), Gaps = 9/216 (4%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P S+DWR KGAVT +KNQG EGI +I +GNL+ LSEQ+L+DC + +
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH-S 60
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC--GREHAAAAKISSYEVLPSGDEQ 220
GC G + +Y+ N G+ T YPY Q C + KI+ Y+ +PS E
Sbjct: 61 YGCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXET 119
Query: 221 ALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIK 280
+ L A++ QP+S+ +E G+ F+ YK G+F+G CGT+LDHAVT +G+GT+ DG Y +IK
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTS-DGKNYIIIK 178
Query: 281 NSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
NSWG WGE GYMR++R +G CG+ + YP
Sbjct: 179 NSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 165/315 (52%), Gaps = 14/315 (4%)
Query: 8 SIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGTNQ 67
S+ + KW A H R Y E+ R ++++N++ I+ EG ++ + N
Sbjct: 3 SLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIE--LHNQEYREG-KHSFTMAMNA 58
Query: 68 FSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGXXXXX 127
F D+T+ EFR G + F+ + P S+DWREKG VT +KNQG
Sbjct: 59 FGDMTSEEFRQVMNGLQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSW 118
Query: 128 XXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SNGNSGCVAGKSDIAFKYIIKNQGIATE 186
EG +G LI LSEQ L+DCS GN GC G D AF+Y+ N G+ +E
Sbjct: 119 AFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSE 178
Query: 187 ADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQALLKAV-SMQPVSINIEGTGQDFKN 244
YPY + SC + A + + +P E+AL+KAV ++ P+S+ I+ + F
Sbjct: 179 ESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLF 237
Query: 245 YKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDGTKYWLIKNSWGDTWGEAGYMRIQRD- 298
YK GI F C ++ +DH V ++G+G T DG KYWL+KNSWG+ WG GY+++ +D
Sbjct: 238 YKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDR 297
Query: 299 EGLCGIGTQAAYPIT 313
CGI + A+YP
Sbjct: 298 RNHCGIASAASYPTV 312
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 169/305 (55%), Gaps = 15/305 (4%)
Query: 16 WMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGTNQFSDLTNAE 75
W +G+ YK++ E+ +R I+++NL+++ + G++ +Y LG N D+T+ E
Sbjct: 15 WKKTYGKQYKEKNEEAVRRLIWEKNLKFV--MLHNLEHSMGMH-SYDLGMNHLGDMTSEE 71
Query: 76 FRASYAGNSMAITSQ---HSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGXXXXXXXXXX 132
+ + S+ + SQ + ++K +P S+DWREKG VT +K QG
Sbjct: 72 VMSLMS--SLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAV 129
Query: 133 XXXEGITQISSGNLIRLSEQQLLDCSSN--GNSGCVAGKSDIAFKYIIKNQGIATEADYP 190
E ++ +G L+ LS Q L+DCS+ GN GC G AF+YII N+GI ++A YP
Sbjct: 130 GALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYP 189
Query: 191 YHQVQGSCGREHA-AAAKISSYEVLPSGDEQALLKAVSMQ-PVSINIEGTGQDFKNYKGG 248
Y + C + AA S Y LP G E L +AV+ + PVS+ ++ F Y+ G
Sbjct: 190 YKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSG 249
Query: 249 I-FNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEG-LCGIGT 306
+ + C ++H V ++G+G +G +YWL+KNSWG +GE GY+R+ R++G CGI +
Sbjct: 250 VYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIAS 308
Query: 307 QAAYP 311
+YP
Sbjct: 309 FPSYP 313
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 165/315 (52%), Gaps = 14/315 (4%)
Query: 8 SIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGTNQ 67
S+ + KW A H R Y E+ R ++++N++ I+ EG ++ + N
Sbjct: 7 SLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIE--LHNQEYREG-KHSFTMAMNA 62
Query: 68 FSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGXXXXX 127
F D+T+ EFR G + F+ + P S+DWREKG VT +KNQG
Sbjct: 63 FGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSXW 122
Query: 128 XXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SNGNSGCVAGKSDIAFKYIIKNQGIATE 186
EG +G LI LSEQ L+DCS GN GC G D AF+Y+ N G+ +E
Sbjct: 123 AFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSE 182
Query: 187 ADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQALLKAV-SMQPVSINIEGTGQDFKN 244
YPY + SC + A + + +P E+AL+KAV ++ P+S+ I+ + F
Sbjct: 183 ESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLF 241
Query: 245 YKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDGTKYWLIKNSWGDTWGEAGYMRIQRD- 298
YK GI F C ++ +DH V ++G+G T D KYWL+KNSWG+ WG GY+++ +D
Sbjct: 242 YKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 301
Query: 299 EGLCGIGTQAAYPIT 313
CGI + A+YP
Sbjct: 302 RNHCGIASAASYPTV 316
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 130/217 (59%), Gaps = 9/217 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P S+DWR KGAVT +K+QG EGI +I +GNL+ LSEQ+L+DC
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEV--LPSGDE 219
+ GC G + +Y+ +N GI A YPY Q +C K+ + V + S +E
Sbjct: 60 SYGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNE 118
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
+LL A++ QPVS+ +E G+DF+NYKGGIF G CGT++DHAVT +G+G + LI
Sbjct: 119 GSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYI-LI 177
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
KNSWG WGE GY+RI+R G+CG+ + YPI
Sbjct: 178 KNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 128/218 (58%), Gaps = 11/218 (5%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P S+DWR+KGAVTS+K+QG EGI I++G LI +SEQQ++DC +
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQAL 222
G +D AF+++I N GIA++A+YPY V G+C AA+I Y +P+ AL
Sbjct: 62 XX-XGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKPIAARIDGYTNVPN-SSSAL 119
Query: 223 LKAVSMQPVSINIEGTGQDFKNYKG-GIFNGVCGTQ----LDHAVTIIGFGTTEDGTKYW 277
L AV+ QPVS+NI + F+ Y G GIF G + +DH V I+G+G+ YW
Sbjct: 120 LDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYW 179
Query: 278 LIKNSWGDTWGEAGYMRIQRD----EGLCGIGTQAAYP 311
++KNSWG WG GY+ I+R+ +G+C I +YP
Sbjct: 180 IVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYP 217
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 138/257 (53%), Gaps = 10/257 (3%)
Query: 66 NQFSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGXXX 125
N F D+T+ EFR G + F+ + P S+DWREKG VT +KNQG
Sbjct: 3 NAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGS 62
Query: 126 XXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SNGNSGCVAGKSDIAFKYIIKNQGIA 184
EG +G LI LSEQ L+DCS GN GC G D AF+Y+ N G+
Sbjct: 63 CWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLD 122
Query: 185 TEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQALLKAV-SMQPVSINIEGTGQDF 242
+E YPY + SC + A + + +P E+AL+KAV ++ P+S+ I+ + F
Sbjct: 123 SEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESF 181
Query: 243 KNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDGTKYWLIKNSWGDTWGEAGYMRIQR 297
YK GI F C ++ +DH V ++G+G T D KYWL+KNSWG+ WG GY+++ +
Sbjct: 182 LFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK 241
Query: 298 D-EGLCGIGTQAAYPIT 313
D CGI + A+YP
Sbjct: 242 DRRNHCGIASAASYPTV 258
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 169/312 (54%), Gaps = 14/312 (4%)
Query: 9 IAEKH-EKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGTNQ 67
I + H E W H + Y +++++ R I+++NL+YI G++ TY+L N
Sbjct: 6 ILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYIS--IHNLEASLGVH-TYELAMNH 62
Query: 68 FSDLTNAEFRASYAGNSMAITSQHSS---FKYQNLTQVPTSMDWREKGAVTSIKNQGGXX 124
D+T+ E G + ++ S+ + + + P S+D+R+KG VT +KNQG
Sbjct: 63 LGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCG 122
Query: 125 XXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIA 184
EG + +G L+ LS Q L+DC S N GC G AF+Y+ KN+GI
Sbjct: 123 SCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQYVQKNRGID 181
Query: 185 TEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDF 242
+E YPY + SC AAK Y +P G+E+AL +AV+ + PVS+ I+ + F
Sbjct: 182 SEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSF 241
Query: 243 KNYKGGI-FNGVCGT-QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE- 299
+ Y G+ ++ C + L+HAV +G+G + G K+W+IKNSWG+ WG GY+ + R++
Sbjct: 242 QFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWIIKNSWGENWGNKGYILMARNKN 300
Query: 300 GLCGIGTQAAYP 311
CGI A++P
Sbjct: 301 NACGIANLASFP 312
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 130/216 (60%), Gaps = 13/216 (6%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+PTS+DWR+KGAVT ++NQGG EGI +I +G L+ LSEQ+LLDC
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEV--LPSGDE 219
+ GC G A +Y+ N GI YPY VQ C A K+ + V +P +E
Sbjct: 60 SYGCRGGFPLYALQYV-ANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNE 118
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
QAL++ +++QPVSI +E G+ F+NY+GGIF G CGT +DHAV +G+ G Y LI
Sbjct: 119 QALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGY-----GNDYILI 173
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYP 311
KNSWG WGE GY+RI+R +G CG+ + + +P
Sbjct: 174 KNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFP 209
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 164/322 (50%), Gaps = 23/322 (7%)
Query: 6 SISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGT 65
S +AEK E + + RSY + E+ R +IF++ LE ++ +G+ +Y LG
Sbjct: 15 STFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEE--HNEKYRQGL-VSYTLGV 71
Query: 66 NQFSDLTNAEFRASYAG---------NSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTS 116
N F+D+T E +A G N + I ++ + P S DWR++G V+
Sbjct: 72 NLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTRED-LGLNASVRYPASFDWRDQGMVSP 130
Query: 117 IKNQGGXXXXXXXXXXXXXEGITQISSGNLI--RLSEQQLLDCSSNGNSGCVAGKSDIAF 174
+KNQG E +I++G +SEQQL+DC N GC G + AF
Sbjct: 131 VKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA-LGCSGGWMNDAF 189
Query: 175 KYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVSMQ-PVS 232
Y+ +N GI +E YPY G+C + + AA++S Y L DE L V+ + PV+
Sbjct: 190 TYVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVA 249
Query: 233 INIEGTGQDFKNYKGGIF-NGVCGT-QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEA 290
+ + F +Y GG++ N C T + HAV I+G+G E+G YWL+KNSWGD WG
Sbjct: 250 VAFDAD-DPFGSYSGGVYYNPTCETNKFTHAVLIVGYGN-ENGQDYWLVKNSWGDGWGLD 307
Query: 291 GYMRIQRD-EGLCGIGTQAAYP 311
GY +I R+ CGI A+ P
Sbjct: 308 GYFKIARNANNHCGIAGVASVP 329
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 163/316 (51%), Gaps = 28/316 (8%)
Query: 11 EKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGTNQFSD 70
E+ ++ H +SY +E+ R IFK N + K+ E TY NQF D
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDN---VAKIAEHNAKFEKGEVTYSKAMNQFGD 81
Query: 71 LTNAEFRASYAGNSMAITSQHSSFKYQNLTQ--------VPTSMDWREKGAVTSIKNQGG 122
++ EF A Y A +H +NL + S+DWR AV+ +K+QG
Sbjct: 82 MSKEEFLA-YVNRGKAQKPKHP----ENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQGQ 135
Query: 123 XXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN-GNSGCVAGKSDIAFKYIIKNQ 181
EG + G L LSEQ L+DCSS+ GN+GC G D AF YI +
Sbjct: 136 CGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYI-HDY 194
Query: 182 GIATEADYPYHQVQGSCGR--EHAAAAKISSYEVLPSGDEQALLKAVSMQ-PVSINIEGT 238
GI +E+ YPY + QG R + +S Y LPSGDE +L AV PV++ I+ T
Sbjct: 195 GIMSESAYPY-EAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDAT 253
Query: 239 GQDFKNYKGGIF-NGVCG-TQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQ 296
+ + Y GG+F + C + L+H V ++G+G+ ++G YW++KNSWG WGE+GY R
Sbjct: 254 -DELQFYSGGLFYDQTCNQSDLNHGVLVVGYGS-DNGQDYWILKNSWGSGWGESGYWRQV 311
Query: 297 RDEG-LCGIGTQAAYP 311
R+ G CGI T A+YP
Sbjct: 312 RNYGNNCGIATAASYP 327
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 9/216 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P ++DWR+KGAVT +++QG EGI +I +G L+ LSEQ+L+DC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAA--KISSYEVLPSGDE 219
+ GC G A +Y+ KN GI + YPY QG+C + K S + +E
Sbjct: 60 SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
LL A++ QPVS+ +E G+ F+ YKGGIF G CGT++DHAVT +G+G + LI
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYI-LI 177
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYP 311
KNSWG WGE GY+RI+R G+CG+ + YP
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 125/217 (57%), Gaps = 13/217 (5%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR+KGAVT +KNQG EGI +I +GNL + SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC-GREHAA-AAKISSYEVLPSGDE 219
+ GC G A + ++ GI YPY VQ C RE AAK + +E
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
ALL +++ QPVS+ +E G+DF+ Y+GGIF G CG ++DHAV +G+G Y LI
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
KNSWG WGE GY+RI+R G+CG+ T + YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 124/217 (57%), Gaps = 13/217 (5%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR+KGAVT +KNQG EGI +I +GNL SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC-GREHAA-AAKISSYEVLPSGDE 219
+ GC G A + ++ GI YPY VQ C RE AAK + +E
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
ALL +++ QPVS+ +E G+DF+ Y+GGIF G CG ++DHAV +G+G Y LI
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
KNSWG WGE GY+RI+R G+CG+ T + YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 145/263 (55%), Gaps = 13/263 (4%)
Query: 60 TYQLGTNQFSDLTNAEFRASY---AGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTS 116
TY LG NQF+D+T EF+A Y + I S ++ N VP +DWRE G VT
Sbjct: 48 TYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRA-VPDKIDWRESGYVTE 106
Query: 117 IKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN-GNSGCVAGKSDIAFK 175
+K+QG EG + I SEQQL+DCS GN+GC G + A++
Sbjct: 107 VKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQ 166
Query: 176 YIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQALLKAVSMQ-PVSI 233
Y+ K G+ TE+ YPY V+G C + AK++ + + SG E L V + P ++
Sbjct: 167 YL-KQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAV 225
Query: 234 NIEGTGQDFKNYKGGIFNG-VCGT-QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAG 291
++ DF Y+ GI+ C +++HAV +G+GT + GT YW++KNSWG +WGE G
Sbjct: 226 AVD-VESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGT-QGGTDYWIVKNSWGLSWGERG 283
Query: 292 YMRIQRDEG-LCGIGTQAAYPIT 313
Y+R+ R+ G +CGI + A+ P+
Sbjct: 284 YIRMVRNRGNMCGIASLASLPMV 306
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 123/217 (56%), Gaps = 13/217 (5%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR+KGAVT +KNQG EGI +I +GNL SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC-GREHAA-AAKISSYEVLPSGDE 219
+ GC G A + ++ GI YPY VQ C RE AAK + +E
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
ALL +++ QPVS+ +E G+DF+ Y+GGIF G CG ++DHAV +G+G Y LI
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
KNSWG WGE GY+RI+R G+CG+ T + YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 9/216 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P ++DWR+KGAVT +++QG EGI +I +G L+ LSEQ+L+DC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAA--KISSYEVLPSGDE 219
+ GC G A +Y+ KN GI + YPY QG+C + K S + +E
Sbjct: 60 SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
LL A++ QPVS+ +E G+ F+ YKGGIF G CGT+++HAVT +G+G + LI
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYI-LI 177
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYP 311
KNSWG WGE GY+RI+R G+CG+ + YP
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 13/217 (5%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR+KGAVT +KNQG EGI +I +GNL + SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC-GREHAA-AAKISSYEVLPSGDE 219
+ GC G A + ++ GI YPY VQ C RE AAK + ++
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
ALL +++ QPVS+ ++ G+DF+ Y+GGIF G CG ++DHAV +G+G Y LI
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
KNSWG WGE GY+RI+R G+CG+ T + YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 13/217 (5%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
+P +DWR+KGAVT +KNQG EGI +I +GNL + SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC-GREHAA-AAKISSYEVLPSGDE 219
+ GC G A + ++ GI YPY VQ C RE AAK + ++
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
ALL +++ QPVS+ ++ G+DF+ Y+GGIF G CG ++DHAV +G+G Y LI
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
KNSWG WGE GY+RI+R G+CG+ T + YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 123/216 (56%), Gaps = 13/216 (6%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P +DWR+KGAVT +KNQG EGI +I +GNL + SEQ+LLDC +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-S 60
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC-GREHAA-AAKISSYEVLPSGDEQ 220
GC G A + ++ GI YPY VQ C RE AAK + ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 221 ALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIK 280
ALL +++ QPVS+ ++ G+DF+ Y+GGIF G CG ++DHAV +G+G Y LIK
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILIK 174
Query: 281 NSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
NSWG WGE GY+RI+R G+CG+ T + YP+
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 123/219 (56%), Gaps = 6/219 (2%)
Query: 100 TQVPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS- 158
+++P +DWR +G VT +K+Q EG +G L+ LSEQ+L+DCS
Sbjct: 5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSR 64
Query: 159 SNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSG 217
+ GN C G+ + AF+Y++ + GI +E YPY C + KI ++ +P
Sbjct: 65 AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILGFKDVPRR 124
Query: 218 DEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTK-Y 276
E A+ A++ PVSI IE F+ Y G+F+ CGT LDH V ++G+GT ++ K +
Sbjct: 125 SEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDF 184
Query: 277 WLIKNSWGDTWGEAGYMRI---QRDEGLCGIGTQAAYPI 312
W++KNSWG WG GYM + + +EG CG+ A++P+
Sbjct: 185 WIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPV 223
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 127/219 (57%), Gaps = 9/219 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SN 160
+P S+DWR+KG VT +KNQ EG +G L+ LSEQ L+DCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDE 219
GN GC G AF+Y+ +N G+ +E YPY V C R + A+ + + V+ G E
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 220 QALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDG 273
+AL+KAV ++ P+S+ ++ F+ YK GI F C ++ LDH V ++G+G D
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 274 TKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYP 311
+KYWL+KNSWG WG GY++I +D+ CGI T A+YP
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 125/220 (56%), Gaps = 10/220 (4%)
Query: 101 QVPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-S 159
+ P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 160 NGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGD 218
GN GC G D AF+Y+ N G+ +E YPY + SC + A + + +P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-Q 119
Query: 219 EQALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTED 272
E+AL+KAV ++ P+S+ I+ + F YK GI F C ++ +DH V ++G+G T D
Sbjct: 120 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 179
Query: 273 GTKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYP 311
KYWL+KNSWG+ WG GY+++ +D CGI + A+YP
Sbjct: 180 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 219
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 9/219 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SN 160
+P S+DWR+KG VT +KNQ EG +G L+ LSEQ L+DCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDE 219
GN GC G AF+Y+ +N G+ +E YPY V C R + A+ + + V+ G E
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 220 QALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDG 273
+AL+KAV ++ P+S+ ++ F+ YK GI F C ++ LDH V ++G+G D
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 274 TKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYP 311
+KYWL+KNSWG WG GY++I +D+ CGI T A+YP
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + A AA Y LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPYGR 120
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 125/220 (56%), Gaps = 10/220 (4%)
Query: 101 QVPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-S 159
+ P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 160 NGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGD 218
GN GC G D AF+Y+ N G+ +E YPY + SC + A + + +P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-Q 119
Query: 219 EQALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTED 272
E+AL+KAV ++ P+S+ I+ + F YK GI F C ++ +DH V ++G+G T D
Sbjct: 120 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 179
Query: 273 GTKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYP 311
KYWL+KNSWG+ WG GY+++ +D CGI + A+YP
Sbjct: 180 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SN 160
P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDE 219
GN GC G D AF+Y+ N G+ +E YPY + SC + A + + +P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 220 QALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDG 273
+AL+KAV ++ P+S+ I+ + F YK GI F C ++ +DH V ++G+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 274 TKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYP 311
KYWL+KNSWG+ WG GY+++ +D CGI + A+YP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 121
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 180
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 122
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 123 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 181
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 182 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 217
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SN 160
P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDE 219
GN GC G D AF+Y+ N G+ +E YPY + SC + A + + +P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 220 QALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDG 273
+AL+KAV ++ P+S+ I+ + F YK GI F C ++ +DH V ++G+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 274 TKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYP 311
KYWL+KNSWG+ WG GY+++ +D CGI + A+YP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 123
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 124 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 182
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 183 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 218
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 125/221 (56%), Gaps = 10/221 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SN 160
P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDE 219
GN GC G D AF+Y+ N G+ +E YPY + SC + A + + +P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QE 119
Query: 220 QALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDG 273
+AL+KAV ++ P+S+ I+ + F YK GI F C ++ +DH V ++G+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 274 TKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYPIT 313
KYWL+KNSWG+ WG GY+++ +D CGI + A+YP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SN 160
P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDE 219
GN GC G D AF+Y+ N G+ +E YPY + SC + A + + +P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QE 119
Query: 220 QALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDG 273
+AL+KAV ++ P+S+ I+ + F YK GI F C ++ +DH V ++G+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 274 TKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYP 311
KYWL+KNSWG+ WG GY+++ +D CGI + A+YP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SN 160
P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDE 219
GN GC G D AF+Y+ N G+ +E YPY + SC + A + + +P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 220 QALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG---TTEDG 273
+AL+KAV ++ P+S+ I+ + F YK GI F C ++ +DH V ++G+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 274 TKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYP 311
KYWL+KNSWG+ WG GY+++ +D CGI + A+YP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSKYRAATCSKYTELPYGR 120
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 121
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 180
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA S Y LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 121
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 180
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 122/216 (56%), Gaps = 7/216 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
+P S+DWREKG VT +K QG E ++ +G L+ LS Q L+DCS+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 161 -GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHA-AAAKISSYEVLPSGD 218
GN GC G AF+YII N+GI ++A YPY + C + AA Y LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCRKYTELPYGR 120
Query: 219 EQALLKAVSMQ-PVSINIEGTGQDFKNYKGGI-FNGVCGTQLDHAVTIIGFGTTEDGTKY 276
E L +AV+ + PVS+ ++ F Y+ G+ + C ++H V ++G+G +G +Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEG-LCGIGTQAAYP 311
WL+KNSWG +GE GY+R+ R++G CGI + +YP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 124/216 (57%), Gaps = 9/216 (4%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SNG 161
P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC--GREHAAAAKISSYEVLPSGDE 219
N GC G D AF+Y+ N G+ +E YPY + SC +++ A + ++ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDVGFVDI--PKQE 119
Query: 220 QALLKAV-SMQPVSINIEGTGQDFKNYKGGIF--NGVCGTQLDHAVTIIGFGTTEDGTKY 276
+AL+KAV ++ P+S+ I+ + F YK GI+ + + L+HA+ ++G+G + KY
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKY 179
Query: 277 WLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYP 311
WL+KNSWG+ WG GY+++ +D CGI + A+YP
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 215
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 7/215 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
P S+D+REKG VT +KNQG EG + +G L+ LS Q L+DC S
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQ 220
N GC G AF+Y+ KN+GI +E YPY + SC AAK Y +P G+E+
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 221 ALLKAVS-MQPVSINIEGTGQDFKNYKGGI-FNGVCGT-QLDHAVTIIGFGTTEDGTKYW 277
AL +AV+ + PVS+ I+ + F+ Y G+ ++ C + L+HAV +G+G ++ G K+W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESK-GNKHW 178
Query: 278 LIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYP 311
+IKNSWG+ WG GY+++ R++ CGI A++P
Sbjct: 179 IIKNSWGENWGMGGYIKMARNKNNACGIANLASFP 213
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 121/219 (55%), Gaps = 10/219 (4%)
Query: 103 PTSMDWREKG-AVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN- 160
P SMDWR+KG V+ +KNQG E I++G ++ L+EQQL+DC+ N
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDE 219
N GC G AF+YI N+GI E YPY C + A A + + DE
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDE 121
Query: 220 QALLKAVSM-QPVSINIEGTGQDFKNYKGGIFNGV-C---GTQLDHAVTIIGFGTTEDGT 274
+A+++AV++ PVS E T DF Y+ GI++ C +++HAV +G+G E+G
Sbjct: 122 EAMVEAVALYNPVSFAFEVT-NDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGE-ENGI 179
Query: 275 KYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313
YW++KNSWG WG GY I+R + +CG+ A+YPI
Sbjct: 180 PYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIP 218
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 125/216 (57%), Gaps = 7/216 (3%)
Query: 101 QVPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSN 160
+ P S+D+R+KG VT +KNQG EG + +G L+ LS Q L+DC S
Sbjct: 2 RAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE 61
Query: 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDE 219
N GC G AF+Y+ KN+GI +E YPY + SC AAK Y +P G+E
Sbjct: 62 -NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNE 120
Query: 220 QALLKAVS-MQPVSINIEGTGQDFKNYKGGI-FNGVCGT-QLDHAVTIIGFGTTEDGTKY 276
+AL +AV+ + PVS+ I+ + F+ Y G+ ++ C + L+HAV +G+G + G K+
Sbjct: 121 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKH 179
Query: 277 WLIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYP 311
W+IKNSWG+ WG GY+ + R++ CGI A++P
Sbjct: 180 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 7/214 (3%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P S+D+R+KG VT +KNQG EG + +G L+ LS Q L+DC S N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQA 221
GC G AF+Y+ KN+GI +E YPY + SC AAK Y +P G+E+A
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKA 120
Query: 222 LLKAVS-MQPVSINIEGTGQDFKNYKGGI-FNGVCGT-QLDHAVTIIGFGTTEDGTKYWL 278
L +AV+ + PVS+ I+ + F+ Y G+ ++ C + L+HAV +G+G + G K+W+
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWI 179
Query: 279 IKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYP 311
IKNSWG+ WG GY+ + R++ CGI A++P
Sbjct: 180 IKNSWGENWGNKGYILMARNKNNACGIANLASFP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 7/214 (3%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P S+D+R+KG VT +KNQG EG + +G L+ LS Q L+DC S N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 59
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQA 221
GC G AF+Y+ KN+GI +E YPY + SC AAK Y +P G+E+A
Sbjct: 60 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKA 119
Query: 222 LLKAVS-MQPVSINIEGTGQDFKNYKGGI-FNGVCGT-QLDHAVTIIGFGTTEDGTKYWL 278
L +AV+ + PVS+ I+ + F+ Y G+ ++ C + L+HAV +G+G + G K+W+
Sbjct: 120 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWI 178
Query: 279 IKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYP 311
IKNSWG+ WG GY+ + R++ CGI A++P
Sbjct: 179 IKNSWGENWGNKGYILMARNKNNACGIANLASFP 212
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 7/214 (3%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P S+D+R+KG VT +KNQG EG + ++G L+ L+ Q L+DC S N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE-N 60
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQA 221
GC G AF+Y+ +N+GI +E YPY SC AAK Y +P G+E A
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEAA 120
Query: 222 LLKAVS-MQPVSINIEGTGQDFKNYKGGIF--NGVCGTQLDHAVTIIGFGTTEDGTKYWL 278
L +AV+ + PVS+ I+ + F+ Y G++ L+HAV +G+G + G K+W+
Sbjct: 121 LKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGI-QAGNKHWI 179
Query: 279 IKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYP 311
IKNSWG++WG AGY+ + R++ CGI A++P
Sbjct: 180 IKNSWGESWGNAGYILMARNKNNACGIANLASFP 213
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
P S+D+R+KG VT +KNQG EG + +G L+ LS Q L+DC S
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 59
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQ 220
N GC G AF+Y+ +N+GI +E YPY SC AAK Y +P G+E+
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 221 ALLKAVS-MQPVSINIEGTGQDFKNYKGGIF--NGVCGTQLDHAVTIIGFGTTEDGTKYW 277
AL +AV+ + PVS+ I+ + F+ Y G++ L+HAV +G+G + G K+W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYG-IQKGNKHW 178
Query: 278 LIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYP 311
+IKNSWG++WG GY+ + R++ CGI A++P
Sbjct: 179 IIKNSWGESWGNKGYILMARNKNNACGIANLASFP 213
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 19/225 (8%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P S DW +KG +T +K QG E I++GNL+ LSEQ+L+DC +
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE-S 61
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC-GREHAAAAKISSYEV-------L 214
GC G +F++++K+ GIA+EADYPY G C E I +Y V
Sbjct: 62 EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNEST 121
Query: 215 PSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNG-VCGTQ--LDHAVTIIGFGTTE 271
S E +L V QP+S++I+ +DF Y GGI++G C + ++H V I+G+G+ E
Sbjct: 122 ESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGS-E 178
Query: 272 DGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPI 312
DG YW+ KNSWG+ WG GY+RIQR+ G+CG+ A+YPI
Sbjct: 179 DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 123/212 (58%), Gaps = 7/212 (3%)
Query: 105 SMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGNSG 164
S+D+R+KG VT +KNQG EG + +G L+ LS Q L+DC S N G
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDG 60
Query: 165 CVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQALL 223
C G AF+Y+ KN+GI +E YPY + SC AAK Y +P G+E+AL
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALK 120
Query: 224 KAVS-MQPVSINIEGTGQDFKNYKGGIF-NGVCGT-QLDHAVTIIGFGTTEDGTKYWLIK 280
+AV+ + PVS+ I+ + F+ Y G++ + C + L+HAV +G+G + G K+W+IK
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-QKGNKHWIIK 179
Query: 281 NSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYP 311
NSWG+ WG GY+ + R++ CGI A++P
Sbjct: 180 NSWGENWGNKGYILMARNKNNACGIANLASFP 211
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 114/224 (50%), Gaps = 19/224 (8%)
Query: 104 TSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGNS 163
+ DWR VT +K+Q E I LI LSEQ+L+DCS N
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NY 77
Query: 164 GCVAGKSDIAFKYIIKNQGIATEADYPY-HQVQGSCGREHAAAAK-ISSYEVLPSGDEQA 221
GC G + AF+ +I+ GI + DYPY C + I +Y +P +
Sbjct: 78 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 137
Query: 222 LLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGT-------TEDGT 274
L+ + P+SI++ DF YK GIF+G CG QL+HAV ++GFG T+ G
Sbjct: 138 ALRFLG--PISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 194
Query: 275 K--YWLIKNSWGDTWGEAGYMRIQRDE-GL---CGIGTQAAYPI 312
K Y++IKNSWG WGE G++ I+ DE GL CG+GT A P+
Sbjct: 195 KHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 110/207 (53%), Gaps = 12/207 (5%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P ++DWREKGAVT +K+QG EG Q++ L+ LSEQ L+ C + +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTI-D 60
Query: 163 SGCVAGKSDIAFKYIIKNQG--IATEADYPY---HQVQGSCGRE-HAAAAKISSYEVLPS 216
GC G D AF +I+ + G + TEA YPY + Q C H A I+ + LP
Sbjct: 61 FGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQ 120
Query: 217 GDEQALLKAVSMQ-PVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTK 275
DE A+ ++ P++I ++ T F +Y GGI QLDH V ++G+ +
Sbjct: 121 -DEDAIAAYLAENGPLAIAVDAT--SFMDYNGGILTSCTSEQLDHGVLLVGYNDASN-PP 176
Query: 276 YWLIKNSWGDTWGEAGYMRIQRDEGLC 302
YW+IKNSW + WGE GY+RI++ C
Sbjct: 177 YWIIKNSWSNMWGEDGYIRIEKGTNQC 203
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 114/224 (50%), Gaps = 19/224 (8%)
Query: 104 TSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGNS 163
+ DWR VT +K+Q E I LI LSEQ+L+DCS N
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NY 78
Query: 164 GCVAGKSDIAFKYIIKNQGIATEADYPY-HQVQGSCGREHAAAAK-ISSYEVLPSGDEQA 221
GC G + AF+ +I+ GI + DYPY C + I +Y +P +
Sbjct: 79 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 138
Query: 222 LLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGT-------TEDGT 274
L+ + P+SI++ DF YK GIF+G CG QL+HAV ++GFG T+ G
Sbjct: 139 ALRFLG--PISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 195
Query: 275 K--YWLIKNSWGDTWGEAGYMRIQRDE-GL---CGIGTQAAYPI 312
K Y++IKNSWG WGE G++ I+ DE GL CG+GT A P+
Sbjct: 196 KHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 110/223 (49%), Gaps = 19/223 (8%)
Query: 105 SMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGNSG 164
+ DWR G VT +K+Q E I L SEQ+L+DCS N+G
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK-NNG 81
Query: 165 CVAGKSDIAFKYIIKNQGIATEADYPY-HQVQGSCGREHA-AAAKISSYEVLPSGDEQAL 222
C G AF +I G+ ++ DYPY + +C + I SY +P +
Sbjct: 82 CYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEA 141
Query: 223 LKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGT----TEDGTK--- 275
L+ + P+SI+I + DF Y+GG ++G CG +HAV ++G+G ED +
Sbjct: 142 LRY--LGPISISIAAS-DDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEK 198
Query: 276 --YWLIKNSWGDTWGEAGYMRIQRDEG----LCGIGTQAAYPI 312
Y++IKNSWG WGE GY+ ++ DE C IGT+A P+
Sbjct: 199 FYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 105/217 (48%), Gaps = 10/217 (4%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P ++DWR +GAVT++K+QG E ++ L LSEQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 163 SGCVAGKSDIAFKYIIK--NQGIATEADYPYHQVQG---SCGRE-HAAAAKISSYEVLPS 216
SGC G + AF++I++ N + TE YPY +G C H A I+ + LP
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 217 GDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKY 276
+ Q PV++ ++ + + Y GG+ QLDH V ++G+ + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSA-AVPY 177
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313
W+IKNSW WGE GY+RI + C + +A+ +
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 95/171 (55%), Gaps = 6/171 (3%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SNG 161
P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQ 220
N GC G D AF+Y+ N G+ +E YPY + SC + A + + +P E+
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEK 120
Query: 221 ALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG 268
AL+KAV ++ P+S+ I+ + F YK GI F C ++ +DH V ++G+G
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 14/219 (6%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P ++DWR +GAVT++K+QG E ++ L L+EQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 163 SGCVAGKSDIAFKYIIK--NQGIATEADYPYHQVQG---SCGRE-HAAAAKISSYEVLPS 216
SGC G + AF++I++ N + TE YPY +G C H A I+ + LP
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 217 GDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDG--T 274
+ Q PV++ ++ + + Y GG+ QLDH V ++G+ DG
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAV 175
Query: 275 KYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313
YW+IKNSW WGE GY+RI + C + +A+ +
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 14/219 (6%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P ++DWR +GAVT++K+QG E ++ L L+EQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 163 SGCVAGKSDIAFKYIIK--NQGIATEADYPYHQVQG---SCGRE-HAAAAKISSYEVLPS 216
SGC G + AF++I++ N + TE YPY +G C H A I+ + LP
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 217 GDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDG--T 274
+ Q PV++ ++ + + Y GG+ QLDH V ++G+ DG
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAV 175
Query: 275 KYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313
YW+IKNSW WGE GY+RI + C + +A+ +
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCS-SNG 161
P S+DWREKG VT +KNQG EG +G LI LSEQ L+DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCG-REHAAAAKISSYEVLPSGDEQ 220
N GC G D AF+Y+ N G+ +E YPY + SC + A + + +P E+
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEK 120
Query: 221 ALLKAV-SMQPVSINIEGTGQDFKNYKGGI-FNGVCGTQ-LDHAVTIIGFG 268
AL+KAV ++ P+S+ I+ + F YK GI F C ++ +DH V ++G+G
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 10/217 (4%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P ++DWR +GAVT++K+QG E ++ L LSEQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 163 SGCVAGKSDIAFKYIIK--NQGIATEADYPYHQVQG---SCGRE-HAAAAKISSYEVLPS 216
SGC G + AF++I++ N + TE YPY +G C H A I+ + LP
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 217 GDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKY 276
+ Q PV++ ++ + + Y GG+ LDH V ++G+ + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEALDHGVLLVGYNDSA-AVPY 177
Query: 277 WLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313
W+IKNSW WGE GY+RI + C + +A+ +
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 103/216 (47%), Gaps = 9/216 (4%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P DWR KGAVT +K+QG EG ++ G L+ LSEQ+LLDC +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM-D 60
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQAL 222
C+ G A+ I G+ TE DY Y SC A V S +EQ L
Sbjct: 61 KACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNEQKL 120
Query: 223 LKAVSMQ-PVSINIEGTGQDFKNYKGGI---FNGVCGTQL-DHAVTIIGFGTTEDGTKYW 277
++ + P+S+ I G F Y+ GI +C L DHAV ++G+G D +W
Sbjct: 121 AAWLAKRGPISVAINAFGMQF--YRHGISRPLRPLCSPWLIDHAVLLVGYGQRSD-VPFW 177
Query: 278 LIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313
IKNSWG WGE GY + R G CG+ T A+ +
Sbjct: 178 AIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 213
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 9/212 (4%)
Query: 98 NLTQVPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDC 157
N VP+ +D R VT I+ QGG E + LSEQ+L+DC
Sbjct: 7 NSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC 66
Query: 158 SSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSG 217
+S GC +YI +N G+ E YPY + C R ++ IS+Y +
Sbjct: 67 ASQ--HGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRCRRPNSQHYGISNYCQIYPP 123
Query: 218 DEQALLKAVSMQPVSINIEGTGQD---FKNYKG-GIFNGVCGTQLD-HAVTIIGFGTTED 272
D + + +A++ +I + +D F++Y G I G Q + HAV I+G+G+T+
Sbjct: 124 DVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQ- 182
Query: 273 GTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGI 304
G YW+++NSW TWG++GY Q L I
Sbjct: 183 GDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMI 214
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 35/243 (14%)
Query: 97 QNLTQVPTSMDWREKGA---VTSIKNQGGXXXXXXXXXXXXXEGITQISSGN--LIRLSE 151
Q + +PTS DWR V+ ++NQ E +I + N LS
Sbjct: 202 QKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSP 261
Query: 152 QQLLDCSSNGNSGCVAGKSDIAFKYII-----KNQGIATEADYPYHQVQGSCG-REHAAA 205
Q+++ CS GC G F Y+I ++ G+ EA +PY C +E
Sbjct: 262 QEVVSCSQYAQ-GCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFR 315
Query: 206 AKISSYEVL---PSGDEQALLKA--VSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQ--- 257
S Y + G +AL+K V P+++ E DF +YK GI++ G +
Sbjct: 316 YYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFE-VYDDFLHYKKGIYHHT-GLRDPF 373
Query: 258 -----LDHAVTIIGFGT-TEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGT--QAA 309
+HAV ++G+GT + G YW++KNSWG WGE GY RI+R C I + AA
Sbjct: 374 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 433
Query: 310 YPI 312
PI
Sbjct: 434 TPI 436
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 18/240 (7%)
Query: 66 NQFSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQV-------PTSMDWREKGAVTSIK 118
N SDL+ EF+ + ++ A + F T P +D R+ VT I+
Sbjct: 47 NHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIR 106
Query: 119 NQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYII 178
QGG E + L+EQ+L+DC+S GC +YI
Sbjct: 107 MQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ--HGCHGDTIPRGIEYIQ 164
Query: 179 KNQGIATEADYPYHQVQGSCGREHAAAAKISSY-EVLPSGD---EQALLKAVSMQPVSIN 234
N G+ E+ Y Y + SC R +A IS+Y ++ P +AL + S V I
Sbjct: 165 HN-GVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIG 223
Query: 235 IEGTGQDFKNYKG-GIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGY 292
I+ F++Y G I G Q + HAV I+G+ + G YW+++NSW WG+ GY
Sbjct: 224 IKDLDA-FRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGY 281
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 33/242 (13%)
Query: 97 QNLTQVPTSMDWRE-KGA--VTSIKNQGGXXXXXXXXXXXXXEGITQISSGN--LIRLSE 151
Q + +P S DWR +G V+ ++NQ E +I + N LS
Sbjct: 201 QQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSP 260
Query: 152 QQLLDCSSNGNSGCVAGKSDIAFKYII-----KNQGIATEADYPYHQVQGSCG------R 200
Q+++ CS GC G F Y+I ++ G+ E +PY C R
Sbjct: 261 QEVVSCSPYAQ-GCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLR 314
Query: 201 EHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQ--- 257
+++ + L+ V P+++ E DF +Y GI++ +
Sbjct: 315 YYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFE-VHDDFLHYHSGIYHHTGLSDPFN 373
Query: 258 ----LDHAVTIIGFGTTE-DGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGT--QAAY 310
+HAV ++G+G G YW++KNSWG WGE+GY RI+R C I + AA
Sbjct: 374 PFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAI 433
Query: 311 PI 312
PI
Sbjct: 434 PI 435
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 11/196 (5%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P +D R+ VT I+ QGG E + L+EQ+L+DC+S
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ-- 68
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSY-EVLPSGD--- 218
GC +YI N G+ E+ Y Y + SC R +A IS+Y ++ P
Sbjct: 69 HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKI 127
Query: 219 EQALLKAVSMQPVSINIEGTGQDFKNYKG-GIFNGVCGTQLD-HAVTIIGFGTTEDGTKY 276
+AL + S V I I+ F++Y G I G Q + HAV I+G+ + G Y
Sbjct: 128 REALAQTHSAIAVIIGIKDLDA-FRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ-GVDY 185
Query: 277 WLIKNSWGDTWGEAGY 292
W+++NSW WG+ GY
Sbjct: 186 WIVRNSWDTNWGDNGY 201
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 103/253 (40%), Gaps = 49/253 (19%)
Query: 100 TQVPTSMD----WREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNL--IRLSEQQ 153
++P+S D W ++ +I++Q + I SG + LS
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 154 LLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEA---------DYPY----HQVQG---S 197
LL C + GC G A+ Y +K +GI T + YP+ H +G
Sbjct: 61 LLSCCESCGLGCEGGILGPAWDYWVK-EGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPP 119
Query: 198 CGREHAAAAKI--------------------SSYEVLPSGDEQALLKAV-SMQPVSINIE 236
CG + + SSY V DE+A+ K + PV
Sbjct: 120 CGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNV--KNDEKAIQKEIMKYGPVEAGFT 177
Query: 237 GTGQDFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRI 295
+DF NYK GI+ + G L HA+ IIG+G E+ YWLI NSW + WGE GY RI
Sbjct: 178 -VYEDFLNYKSGIYKHITGETLGGHAIRIIGWGV-ENKAPYWLIANSWNEDWGENGYFRI 235
Query: 296 QRDEGLCGIGTQA 308
R C I ++
Sbjct: 236 VRGRDECSIESEV 248
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P +D R+ VT I+ QGG E + L+EQ+L+DC+S
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ-- 68
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSY-EVLPSGD--- 218
GC +YI N G+ E+ Y Y + SC R +A IS+Y ++ P
Sbjct: 69 HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNVNKI 127
Query: 219 EQALLKAVSMQPVSINIEGTGQDFKNYKG-GIFNGVCGTQLD-HAVTIIGFGTTEDGTKY 276
+AL + S V I I+ F++Y G I G Q + HAV I+G+ + G Y
Sbjct: 128 REALAQTHSAIAVIIGIKDLDA-FRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ-GVDY 185
Query: 277 WLIKNSWGDTWGEAGY 292
W+++NSW WG+ GY
Sbjct: 186 WIVRNSWDTNWGDNGY 201
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 103 PTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGN 162
P +D R+ VT I+ QGG E + L+EQ+L+DC+S
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ-- 68
Query: 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSY-EVLPSGD--- 218
GC +YI N G+ E+ Y Y + SC R +A IS+Y ++ P
Sbjct: 69 HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKI 127
Query: 219 EQALLKAVSMQPVSINIEGTGQDFKNYKG-GIFNGVCGTQLD-HAVTIIGFGTTEDGTKY 276
+AL + S V I I+ F++Y G I G Q + HAV I+G+ + G Y
Sbjct: 128 REALAQTHSAIAVIIGIKDLDA-FRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ-GVDY 185
Query: 277 WLIKNSWGDTWGEAGY 292
W+++NSW WG+ GY
Sbjct: 186 WIVRNSWDTNWGDNGY 201
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 30/237 (12%)
Query: 84 SMAITSQHSSFKYQNLTQVPTSMDWREKGAV---TSIKNQ------GGXXXXXXXXXXXX 134
+ T+ +Y + +P S DWR V + +NQ G
Sbjct: 18 PLGRTTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMAD 77
Query: 135 XEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQV 194
I + + LS Q ++DC GN+G G +D++ GI E Y
Sbjct: 78 RINIKRKGAWPSTLLSVQNVIDC---GNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAK 134
Query: 195 QGSCGR--------EHAAAAKISSYEVLPSGD-------EQALLKAVSMQPVSINIEGTG 239
C + E I +Y + GD E+ + + + P+S I T
Sbjct: 135 DQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMAT- 193
Query: 240 QDFKNYKGGIFNGVCGTQ-LDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRI 295
+ NY GGI+ T ++H V++ G+G + DGT+YW+++NSWG+ WGE G++RI
Sbjct: 194 ERLANYTGGIYAEYQDTTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 149 LSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGR-------- 200
LS Q ++DC GN+G G +D++ GI E Y C +
Sbjct: 57 LSVQNVIDC---GNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCN 113
Query: 201 EHAAAAKISSYEVLPSGD-------EQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGV 253
E I +Y + GD E+ + + + P+S I T + NY GGI+
Sbjct: 114 EFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMAT-ERLANYTGGIYAEY 172
Query: 254 CGTQ-LDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRI 295
T ++H V++ G+G + DGT+YW+++NSWG+ WGE G++RI
Sbjct: 173 QDTTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 147 IRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPY------HQVQGSCGR 200
+ +S LL C S+ GC G D A+ Y + G+ ++ PY H + G
Sbjct: 121 VHISAGDLLACCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGY 179
Query: 201 EHAA----------------AAKISSYEVLPS----GDEQALLKAVSMQPVSINIEGTGQ 240
+ + +Y S G++ + + P + + +
Sbjct: 180 PPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFD-VYE 238
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF Y G+++ V G L HAV ++G+GT+ +G YW I NSW WG GY I+R
Sbjct: 239 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGS 297
Query: 300 GLCGI--GTQAAYPI 312
CGI G A P+
Sbjct: 298 SECGIEDGGSAGIPL 312
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 147 IRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPY------HQVQGSCGR 200
+ +S LL C S+ GC G D A+ Y + G+ ++ PY H + G
Sbjct: 122 VHISAGDLLACCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGY 180
Query: 201 EHAA----------------AAKISSYEVLPS----GDEQALLKAVSMQPVSINIEGTGQ 240
+ + +Y S G++ + + P + + +
Sbjct: 181 PPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFD-VYE 239
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF Y G+++ V G L HAV ++G+GT+ +G YW I NSW WG GY I+R
Sbjct: 240 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGS 298
Query: 300 GLCGI--GTQAAYPI 312
CGI G A P+
Sbjct: 299 SECGIEDGGSAGIPL 313
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ V G + HA+ I+G+G E+GT YWL+ NSW WG+ G+ +I R +
Sbjct: 242 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 300
Query: 300 GLCGIGTQAA 309
CGI ++
Sbjct: 301 DHCGIESEVV 310
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 36/197 (18%)
Query: 147 IRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGS--------- 197
+ +S LL C S+ GC G D A+ Y + G+ ++ PY S
Sbjct: 144 VHISAGDLLACCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGY 202
Query: 198 --CGREHAAAAKI-----------------SSYEVLPSGDEQALLKAVSMQPVSINIEGT 238
C + + K +SY + G++ + + P + +
Sbjct: 203 PPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYAL--QGEDDYMRELFFRGPFEVAFD-V 259
Query: 239 GQDFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQR 297
+DF Y G+++ V G L HAV ++G+GT+ +G YW I NSW WG GY I+R
Sbjct: 260 YEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRR 318
Query: 298 DEGLCGI--GTQAAYPI 312
CGI G A P+
Sbjct: 319 GSSECGIEDGGSAGIPL 335
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ V G + HA+ I+G+G E+GT YWL+ NSW WG+ G+ +I R +
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 300 GLCGIGTQ--AAYPIT 313
CGI ++ A P T
Sbjct: 238 DHCGIESEIVAGMPCT 253
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ V G + HA+ I+G+G E+GT YWL+ NSW WG+ G+ +I R +
Sbjct: 180 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 238
Query: 300 GLCGIGTQAA 309
CGI ++
Sbjct: 239 DHCGIESEVV 248
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ V G + HA+ I+G+G E+GT YWL+ NSW WG+ G+ +I R +
Sbjct: 181 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 239
Query: 300 GLCGIGTQAA 309
CGI ++
Sbjct: 240 DHCGIESEVV 249
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ V G + HA+ I+G+G E+GT YWL+ NSW WG+ G+ +I R +
Sbjct: 185 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 243
Query: 300 GLCGIGTQAA 309
CGI ++
Sbjct: 244 DHCGIESEVV 253
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ V G + HA+ I+G+G E+GT YWL+ NSW WG+ G+ +I R +
Sbjct: 179 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 300 GLCGIGTQAA 309
CGI ++
Sbjct: 238 DHCGIESEVV 247
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ V G + HA+ I+G+G E+GT YWL+ NSW WG+ G+ +I R +
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQ 237
Query: 300 GLCGIGTQ--AAYPIT 313
CGI ++ A P T
Sbjct: 238 DHCGIESEIVAGMPCT 253
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ V G + HA+ I+G+G E+GT YWL+ NSW WG+ G+ +I R +
Sbjct: 130 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 188
Query: 300 GLCGIGTQAA 309
CGI ++
Sbjct: 189 DHCGIESEVV 198
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ V G + HA+ I+G+G E+GT YWL+ NSW WG+ G+ +I R +
Sbjct: 131 DFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQ 189
Query: 300 GLCGIGTQ--AAYPIT 313
CGI ++ A P T
Sbjct: 190 DHCGIESEIVAGMPCT 205
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 259 DHAVTIIGFGT-TEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGT--QAAYPI 312
+HAV ++G+GT + G YW++KNSWG WGE GY RI+R C I + AA PI
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPI 66
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ G + HA+ I+G+G E+G YWL+ NSW WG+ G+ +I R E
Sbjct: 241 DFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRGE 299
Query: 300 GLCGI 304
CGI
Sbjct: 300 NHCGI 304
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ G + HA+ I+G+G E+G YWL+ NSW WG+ G+ +I R E
Sbjct: 185 DFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRGE 243
Query: 300 GLCGI 304
CGI
Sbjct: 244 NHCGI 248
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 241 DFKNYKGGIFNGVCGTQLD-HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299
DF YK G++ G + HA+ I+G+G E+G YWL+ NSW WG+ G+ +I R E
Sbjct: 179 DFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRGE 237
Query: 300 GLCGI 304
CGI
Sbjct: 238 NHCGI 242
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 204 AAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQL-DHAV 262
A KI EV+ G A +KA ++ + E +G+ KN +CG DHAV
Sbjct: 155 AFVKIIKTEVMNKGSVIAYIKAENV----MGYEFSGKKVKN--------LCGDDTADHAV 202
Query: 263 TIIGFG--TTEDGTK--YWLIKNSWGDTWGEAGYMRI 295
I+G+G +G K YW+++NSWG WG+ GY ++
Sbjct: 203 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 204 AAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQL-DHAV 262
A KI EV+ G A +KA ++ + E +G+ +N +CG DHAV
Sbjct: 154 AFVKIIKTEVMNKGSVIAYIKAENV----MGYEFSGKKVQN--------LCGDDTADHAV 201
Query: 263 TIIGFG--TTEDGTK--YWLIKNSWGDTWGEAGYMRI 295
I+G+G +G K YW+++NSWG WG+ GY ++
Sbjct: 202 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 275 KYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYP 311
KYWL+KNSWG+ WG GY+++ +D CGI + A+YP
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 40
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In
Complex With Its Propeptide
Length = 106
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 18 AEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGTNQFSDLTNAEFR 77
A + +SY E EK R+ IFK NL YI +G +Y L N F DL+ EFR
Sbjct: 30 AMYAKSYATEEEKQRRYAIFKNNLVYIH-----THNQQGY--SYSLKMNHFGDLSRDEFR 82
Query: 78 ASYAG--NSMAITSQH 91
Y G S + S H
Sbjct: 83 RKYLGFKKSRNLKSHH 98
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 260 HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYM 293
HAV +G+ +D +++ I+NSWG+ GE GY
Sbjct: 237 HAVLCVGY---DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 256 TQLDHAVTIIGFGTTEDGTKYWLIKNSWG 284
T DH I G ++G +Y+ +KNSWG
Sbjct: 314 TTDDHGXQIYGIAKDQEGNEYYXVKNSWG 342
>pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, Minimized Average Structure
pdb|2VIL|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, 11 Structures
Length = 126
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 234 NIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYM 293
N+E K+Y G + G C L T GF YWL KNS D G A
Sbjct: 25 NMEMVPVPTKSY-GNFYEGDCYVLLSTRKTGSGFSYN---IHYWLGKNSSQDEQGAAAIY 80
Query: 294 RIQRDEGLCGIGTQ 307
Q DE L + Q
Sbjct: 81 TTQMDEYLGSVAVQ 94
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 258 LDHAVTIIGFGTTED---GTKYWLIKNSWGDTWGEAGYM 293
+ HA+T +D W ++NSWG+ G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 258 LDHAVTIIGFGTTED---GTKYWLIKNSWGDTWGEAGYM 293
+ HA+T +D W ++NSWG+ G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 239 GQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTT 270
GQ KN G +NG C D + + G G T
Sbjct: 306 GQPCKNNNGYCYNGKCPIMADQCIALFGPGAT 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,922,618
Number of Sequences: 62578
Number of extensions: 354621
Number of successful extensions: 1050
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 120
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)