Query 041011
Match_columns 313
No_of_seqs 308 out of 1701
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj3_A Cathepsin L-like protei 100.0 3.7E-88 1.3E-92 623.0 32.6 306 2-313 11-331 (331)
2 3tnx_A Papain; hydrolase, cyto 100.0 1.6E-87 5.6E-92 622.2 34.1 295 4-312 57-361 (363)
3 1pci_A Procaricain; zymogen, h 100.0 2.3E-87 8E-92 615.9 33.4 300 4-313 13-321 (322)
4 3qt4_A Cathepsin-L-like midgut 100.0 9.2E-88 3.2E-92 619.0 29.5 301 4-313 18-329 (329)
5 2c0y_A Procathepsin S; proenzy 100.0 1.4E-87 4.8E-92 616.0 28.2 305 5-313 4-315 (315)
6 1by8_A Protein (procathepsin K 100.0 2.8E-87 9.7E-92 613.7 28.8 303 6-313 4-314 (314)
7 1cs8_A Human procathepsin L; p 100.0 8.1E-87 2.8E-91 611.2 29.4 302 7-313 6-316 (316)
8 2o6x_A Procathepsin L1, secret 100.0 2E-85 6.8E-90 600.5 28.7 295 11-313 3-306 (310)
9 1xkg_A DER P I, major mite fec 100.0 1.4E-81 4.8E-86 574.4 26.4 282 12-313 7-302 (312)
10 3pdf_A Cathepsin C, dipeptidyl 100.0 3.6E-74 1.2E-78 545.9 24.3 274 28-311 135-433 (441)
11 3hhi_A Cathepsin B-like cystei 100.0 5E-73 1.7E-77 521.0 18.7 269 31-312 2-311 (325)
12 3pbh_A Procathepsin B; thiol p 100.0 2.7E-69 9.4E-74 495.2 21.9 260 40-312 11-313 (317)
13 1iwd_A Ervatamin B; cysteine p 100.0 2.5E-68 8.6E-73 464.2 23.9 210 102-313 1-214 (215)
14 3p5u_A Actinidin; SAD, cystein 100.0 3.2E-68 1.1E-72 465.5 24.0 211 102-313 1-217 (220)
15 1cqd_A Protein (protease II); 100.0 4.2E-68 1.4E-72 464.8 24.7 211 101-313 2-217 (221)
16 1ppo_A Protease omega; hydrola 100.0 4.9E-68 1.7E-72 462.9 23.8 209 102-313 1-215 (216)
17 3kwz_A Cathepsin K; enzyme inh 100.0 6.3E-68 2.2E-72 462.3 23.8 210 102-313 1-215 (215)
18 1yal_A Chymopapain; hydrolase, 100.0 1E-67 3.5E-72 461.5 24.4 209 102-313 1-215 (218)
19 3ovx_A Cathepsin S; hydrolase, 100.0 6.3E-68 2.2E-72 463.2 22.0 211 102-313 2-218 (218)
20 1s4v_A Cysteine endopeptidase; 100.0 1.4E-67 4.9E-72 463.8 24.1 213 101-313 1-219 (229)
21 1o0e_A Ervatamin C; plant cyst 100.0 3.5E-67 1.2E-71 454.8 23.6 205 102-313 1-207 (208)
22 2fo5_A Cysteine proteinase EP- 100.0 2.2E-67 7.6E-72 469.8 22.6 214 100-313 2-224 (262)
23 2cio_A Papain; hydrolase/inhib 100.0 6.4E-67 2.2E-71 454.6 24.0 205 102-313 1-211 (212)
24 2xu3_A Cathepsin L1; hydrolase 100.0 5.9E-67 2E-71 457.5 23.9 211 102-313 1-220 (220)
25 3u8e_A Papain-like cysteine pr 100.0 2.8E-67 9.7E-72 460.1 20.1 210 102-313 1-219 (222)
26 3ioq_A CMS1MS2; caricaceae, cy 100.0 8.1E-67 2.8E-71 454.4 22.7 205 102-313 1-211 (213)
27 3f75_A Toxopain-2, cathepsin L 100.0 3.1E-67 1.1E-71 460.7 19.9 213 101-313 6-224 (224)
28 2bdz_A Mexicain; cysteine prot 100.0 1.6E-66 5.3E-71 452.6 23.8 205 102-313 1-211 (214)
29 8pch_A Cathepsin H; hydrolase, 100.0 4.7E-67 1.6E-71 458.3 20.6 210 102-313 1-218 (220)
30 3i06_A Cruzipain; autocatalyti 100.0 2.1E-66 7.1E-71 452.4 23.5 207 102-313 1-214 (215)
31 1m6d_A Cathepsin F, catsf; pap 100.0 1.9E-66 6.4E-71 452.4 22.8 207 102-313 1-213 (214)
32 2b1m_A SPE31; papain-like, sug 100.0 2.7E-66 9.4E-71 459.9 23.9 209 101-313 1-224 (246)
33 2oul_A Falcipain 2; cysteine p 100.0 2.6E-66 8.8E-71 459.1 22.4 210 100-313 16-240 (241)
34 3bwk_A Cysteine protease falci 100.0 3E-66 1E-70 459.2 21.8 211 99-313 17-242 (243)
35 3f5v_A DER P 1 allergen; aller 100.0 1.6E-66 5.5E-71 455.5 19.5 210 100-313 8-222 (222)
36 1deu_A Procathepsin X; cystein 100.0 1.5E-61 5.1E-66 436.5 20.9 208 98-312 32-274 (277)
37 3cbj_A Cathepsin B; cathepsin 100.0 1.2E-61 4.1E-66 435.4 19.2 207 101-312 6-256 (266)
38 3qsd_A Cathepsin B-like peptid 100.0 2.3E-61 7.8E-66 430.9 20.4 208 101-312 2-252 (254)
39 2wbf_X Serine-repeat antigen p 100.0 1.7E-55 5.8E-60 395.5 21.5 207 104-312 9-260 (265)
40 3ois_A Cysteine protease; alph 100.0 2.2E-53 7.4E-58 386.2 13.3 228 60-298 13-272 (291)
41 2cb5_A Protein (bleomycin hydr 100.0 9.6E-43 3.3E-47 328.5 16.5 195 101-298 47-412 (453)
42 2e01_A Cysteine proteinase 1; 100.0 9.4E-42 3.2E-46 322.1 18.7 204 101-311 52-422 (457)
43 3pw3_A Aminopeptidase C; bleom 100.0 1E-36 3.6E-41 281.9 17.5 183 113-298 21-356 (383)
44 3f75_P Toxopain-2, cathepsin L 99.8 3.4E-20 1.1E-24 141.4 9.5 76 3-85 15-90 (106)
45 2l95_A Crammer, LP06209P; cyst 99.8 5.4E-19 1.9E-23 128.8 5.8 71 10-85 7-77 (80)
46 1pxv_A Cysteine protease; hydr 97.5 0.0012 4E-08 53.6 11.0 131 118-300 25-164 (183)
47 1cv8_A Staphopain; cysteine pr 97.4 0.0021 7.3E-08 52.0 11.6 120 118-284 16-144 (174)
48 1x9y_A Cysteine proteinase; ha 97.3 0.0031 1E-07 56.6 12.8 130 118-299 201-339 (367)
49 3erv_A Putative C39-like pepti 89.8 1.4 4.7E-05 37.8 8.5 54 213-269 126-187 (236)
50 1dki_A Pyrogenic exotoxin B zy 58.8 21 0.00071 32.5 6.8 54 220-297 290-344 (371)
51 3bb7_A Interpain A; cysteine p 57.6 22 0.00076 31.7 6.6 59 220-297 239-298 (321)
52 4d8b_A Streptopain; papain fol 53.9 20 0.00069 30.9 5.5 54 220-297 172-226 (261)
53 1th5_A NIFU1; iron-sulfur clus 24.7 24 0.00082 24.1 1.0 26 114-141 37-62 (74)
54 2r9f_A Calpain-1 catalytic sub 24.1 64 0.0022 28.8 4.0 38 259-296 246-312 (339)
No 1
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0
Probab=100.00 E-value=3.7e-88 Score=623.00 Aligned_cols=306 Identities=37% Similarity=0.710 Sum_probs=269.9
Q ss_pred chhhhhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhc
Q 041011 2 NEAASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYA 81 (313)
Q Consensus 2 ~~~~~~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~ 81 (313)
+.-.+..++.+|++|+++|+|.|.+.+|+.+|++||++|+++|++||++... +..+|++|+|+|+|||.+||+++++
T Consensus 11 ~~~~~~~l~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~---g~~sy~lg~N~FaDlt~eEf~~~~~ 87 (331)
T 3qj3_A 11 SALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQ---GLVSYTLGVNLFTDMTPEEMKAYTH 87 (331)
T ss_dssp --CCHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSCSEEECCSTTTTCCHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCceeecccccccCCHHHHHHHhc
Confidence 4445778899999999999999999899999999999999999999986221 1239999999999999999999888
Q ss_pred CCCcccccc--CCccccC------CCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCC--ccccCH
Q 041011 82 GNSMAITSQ--HSSFKYQ------NLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGN--LIRLSE 151 (313)
Q Consensus 82 ~~~~~~~~~--~~~~~~~------~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~--~~~LS~ 151 (313)
+.+++.... ...+... ...+||++||||++|+||||||||.||||||||++++||++++++++. .++||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSe 167 (331)
T 3qj3_A 88 GLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSE 167 (331)
T ss_dssp CCCCCSSTTTTCEEECSGGGGTCCSSCCCCSSEEGGGGTCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCH
T ss_pred cccccccccccCcccccccccccccccCCCcceecccCCccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCH
Confidence 765432111 1111111 223799999999999999999999999999999999999999999998 899999
Q ss_pred HHHhhhcCCCCCCCCCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cC
Q 041011 152 QQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQ 229 (313)
Q Consensus 152 q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~g 229 (313)
|+|+||+.. +.||+||++..|+.|+.+++||++|++|||.+.++.|... .....++.+|..++..++++|+++|+ +|
T Consensus 168 Q~LvdC~~~-~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~G 246 (331)
T 3qj3_A 168 QQLVDCVPN-ALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKG 246 (331)
T ss_dssp HHHHHHCTT-SCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCTTSEEECCSEEEEESSCCHHHHHHHHHHHC
T ss_pred HHHhhhccC-CCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCCCCCCCcccceeEeeEEEEeCCCCHHHHHHHHHhCC
Confidence 999999985 8899999999999999998899999999999999999876 55667899999998779999999999 59
Q ss_pred CeEEEEEccccccccccCceEeCC-CC-CCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC-Ccccccc
Q 041011 230 PVSINIEGTGQDFKNYKGGIFNGV-CG-TQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGT 306 (313)
Q Consensus 230 PV~v~~~~~~~~f~~y~~Giy~~~-~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~ 306 (313)
||+|+|++. .+|+.|++|||..+ |+ ..++|||+|||||++ +|++|||||||||++||++|||||+|+. |.|||++
T Consensus 247 PV~v~i~a~-~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~ 324 (331)
T 3qj3_A 247 PVAVAFDAD-DPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNE-NGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAG 324 (331)
T ss_dssp CEEEEECCC-TTGGGEEEEEECCTTCCSSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTT
T ss_pred CEEEEEEcc-cccccccCceEeCCCCCCCcCCEEEEEEEEecc-CCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcCC
Confidence 999999998 45999999999987 86 578999999999987 7999999999999999999999999996 9999999
Q ss_pred ceeeeeC
Q 041011 307 QAAYPIT 313 (313)
Q Consensus 307 ~~~~p~~ 313 (313)
+++||+|
T Consensus 325 ~~~~p~v 331 (331)
T 3qj3_A 325 VASVPTL 331 (331)
T ss_dssp SCEEEEC
T ss_pred ceeeeeC
Confidence 9999986
No 2
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}
Probab=100.00 E-value=1.6e-87 Score=622.21 Aligned_cols=295 Identities=43% Similarity=0.809 Sum_probs=263.7
Q ss_pred hhhhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCC
Q 041011 4 AASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGN 83 (313)
Q Consensus 4 ~~~~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~ 83 (313)
++++++.++|++|+++|+|.|.+.+|+.+|++||++|+++|++||++ +. +|++|+|+|+|||.+||++++++.
T Consensus 57 ~s~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~-~~------sy~~g~N~FaDlT~eEf~~~~~~~ 129 (363)
T 3tnx_A 57 TSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NN------SYWLGLNVFADMSNDEFKEKYTGS 129 (363)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTS-CC------SEEECSCTTTTSCHHHHHHHHSCS
T ss_pred cCHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcC-CC------CeEEeccccccCCHHHHHHHhccc
Confidence 45788999999999999999999999999999999999999999986 55 899999999999999999998876
Q ss_pred Ccccccc-C---CccccCCCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcC
Q 041011 84 SMAITSQ-H---SSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSS 159 (313)
Q Consensus 84 ~~~~~~~-~---~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~ 159 (313)
.+..... . .........+||++||||++|+||||||||.||||||||++++||+++++++++++.||+|+|+||+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LSeQ~LvdC~~ 209 (363)
T 3tnx_A 130 IAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDR 209 (363)
T ss_dssp SCSCCCCSSSSSSCCCCCSCCCCCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT
T ss_pred ccccccccccccccccCcccCCCCcceecccCCCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcCHHHHhcccC
Confidence 5432211 1 11111223479999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC--CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEc
Q 041011 160 NGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEG 237 (313)
Q Consensus 160 ~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~ 237 (313)
. +.||+||.+..|+.|+.++ |+++|++|||.+.++.|... .....++.++..++..++..++.+|++|||+|++++
T Consensus 210 ~-~~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~e~~l~~~v~~gPvsvai~a 287 (363)
T 3tnx_A 210 R-SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEA 287 (363)
T ss_dssp T-SCTTBCCCHHHHHHHHHHT-CBCBTTTSCCCSSCCCCCGGGGCSCSBCCCEEEEECSSCHHHHHHHHTTSCEEEEECC
T ss_pred C-CCCCCCCChHHHHhHHHhc-CccccccCCCcCcCCCcccCCCCCceeeccceEEcchhhHHHHHHHHHcCCcEEEEEe
Confidence 4 7899999999999999887 99999999999998888765 445567788888888889999999999999999998
Q ss_pred cccccccccCceEeCCCCCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----Cccccccceeeee
Q 041011 238 TGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPI 312 (313)
Q Consensus 238 ~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~ 312 (313)
..++|++|++|||..+|+..++|||+|||||+ +|||||||||++|||+|||||+|+. |+|||+++|+||+
T Consensus 288 ~~~~F~~Y~sGVy~~~~~~~lnHaV~iVGyG~-----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~yPi 361 (363)
T 3tnx_A 288 AGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP-----NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 361 (363)
T ss_dssp CSHHHHTEEEEEECCCCCSCCCEEEEEEEEET-----TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTSCEEEEE
T ss_pred cchhhhCCCCCEECCCCCCCCCeEEEEEEcCC-----CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccceeeecc
Confidence 76899999999999999888999999999986 4999999999999999999999984 5699999999998
No 3
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1
Probab=100.00 E-value=2.3e-87 Score=615.91 Aligned_cols=300 Identities=44% Similarity=0.875 Sum_probs=269.6
Q ss_pred hhhhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCC
Q 041011 4 AASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGN 83 (313)
Q Consensus 4 ~~~~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~ 83 (313)
+.+.++..+|++|+++|+|.|.+.+|+.+|+.||++|+++|++||++ +. +|++|+|+|+|||.+||++++++.
T Consensus 13 ~~e~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~------~~~~g~N~FaDlt~eEf~~~~~g~ 85 (322)
T 1pci_A 13 TSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NN------SYWLGLNEFADLSNDEFNEKYVGS 85 (322)
T ss_dssp THHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTT-CC------SEEECSCTTTTSCHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc-CC------ceEEecCccccCCHHHHHHHhcCC
Confidence 35677889999999999999999999999999999999999999986 55 899999999999999999988776
Q ss_pred Ccccccc---CCccccCCCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC
Q 041011 84 SMAITSQ---HSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN 160 (313)
Q Consensus 84 ~~~~~~~---~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~ 160 (313)
.+..... ...+......+||++||||++|+|+||||||.||||||||++++||+++++++++.+.||+|+|+||+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~~g~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~lSeq~lvdC~~- 164 (322)
T 1pci_A 86 LIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER- 164 (322)
T ss_dssp BCCCSSCCCCSEECCCCCCCCSCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHSCT-
T ss_pred CCccccccccccccccccccCCCCeEecccCCCCCCccccccCCccHHHHHHHHHHHHHHHHcCCccccCHHHHHhhcC-
Confidence 5432211 111222233479999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC--CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEcc
Q 041011 161 GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGT 238 (313)
Q Consensus 161 ~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~ 238 (313)
.+.||+||.+..|++|+.++ ||++|++|||.+..+.|... ....++|.+|..|+..++++|+++|++|||+|+|++.
T Consensus 165 ~~~gC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~e~~l~~~l~~GPV~v~i~~~ 243 (322)
T 1pci_A 165 RSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESK 243 (322)
T ss_dssp TSCGGGCBCHHHHHHHHHHH-CBCBTTTSCCCSSCCCCTTTTCCSCCBCCCCEEECCSSBHHHHHHHHHHSCEEEEECTT
T ss_pred CCCCCCCCCHHHHHHHHHHh-CCCchhhCCCCCCCCCCCCCCCCCceEEEeeEEEeCCCcHHHHHHHHHHCCEEEEEecc
Confidence 58899999999999999998 89999999999999999876 2356789999999877899999999999999999997
Q ss_pred ccccccccCceEeCCCCCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 239 GQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 239 ~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
.++|+.|++|||.++|+..++|||+|||||++ +|++|||||||||++||++|||||+|+. |.|||++.++||++
T Consensus 244 ~~~f~~Y~~Gvy~~~c~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~~yp~~ 321 (322)
T 1pci_A 244 GRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKS-GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 321 (322)
T ss_dssp CHHHHTEEEEEECCSCCSCCCEEEEEEEEEEE-TTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGCCEEECC
T ss_pred cccccccCCeEeCCCCCCCCCEEEEEEEEecc-CCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccceeEEEe
Confidence 56899999999998898888999999999998 7999999999999999999999999995 99999999999985
No 4
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}
Probab=100.00 E-value=9.2e-88 Score=618.97 Aligned_cols=301 Identities=38% Similarity=0.732 Sum_probs=264.7
Q ss_pred hhhhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCC
Q 041011 4 AASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGN 83 (313)
Q Consensus 4 ~~~~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~ 83 (313)
-.+..+..+|++|+++|+|.|.+.+|+.+|+.||++|+++|++||++.+. +..+|++|+|+|+|||.+||++ +++.
T Consensus 18 ~~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~---g~~sy~lg~N~FaDlt~eEf~~-~~g~ 93 (329)
T 3qt4_A 18 LPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEK---GEVTYSKAMNQFGDMSKEEFLA-YVNR 93 (329)
T ss_dssp --CCHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSEEECCCGGGGCCHHHHHH-HHHH
T ss_pred cCHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCCCeEEeccccccCCHHHHHH-hcCC
Confidence 34667889999999999999999889999999999999999999985222 1239999999999999999998 6654
Q ss_pred Cccccc-c----CCccccCCCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhc
Q 041011 84 SMAITS-Q----HSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCS 158 (313)
Q Consensus 84 ~~~~~~-~----~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~ 158 (313)
++.... . ...+.... .+||++||||++ +||||||||.||||||||++++||++++++++++++||+|+|+||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~-~~lP~~~DwR~~-~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~LvdC~ 171 (329)
T 3qt4_A 94 GKAQKPKHPENLRMPYVSSK-KPLAASVDWRSN-AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCS 171 (329)
T ss_dssp TCCC------CCEEECCCCC-SCCCSCEECTTT-SCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHC
T ss_pred cccccccccccccccccCCc-cCCCCCEEcccc-ccCCCccCCCCcChHHHHHHHHHHHHHHHHcCCcccCCHHHHHHhc
Confidence 421110 0 01121122 479999999999 9999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCCCCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEE
Q 041011 159 SN-GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINI 235 (313)
Q Consensus 159 ~~-~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~ 235 (313)
.. ++.||+||.+..|++|+.++ ||++|++|||.+.++.|... .....++.+|..++..++++|+++|+ +|||+|+|
T Consensus 172 ~~~g~~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i 250 (329)
T 3qt4_A 172 SSYGNAGCDGGWMDSAFSYIHDY-GIMSESAYPYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAI 250 (329)
T ss_dssp GGGTCCTTBCCCHHHHHHHHHHS-CBCBTTTSCCCSSCCCCCCCGGGCCBCCSEEEECCTTCHHHHHHHHHHTCCEEEEE
T ss_pred cccCCCCCCCCChhHHHHHHHHc-CCCcHHHeeeecCCCCCCCCcccceEEeceEEEecCCCHHHHHHHHHhCCCEEEEE
Confidence 74 57899999999999999999 99999999999999999876 55667899999998788999999999 59999999
Q ss_pred EccccccccccCceEeCC-CC-CCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC-Cccccccceeeee
Q 041011 236 EGTGQDFKNYKGGIFNGV-CG-TQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYPI 312 (313)
Q Consensus 236 ~~~~~~f~~y~~Giy~~~-~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~~~~~p~ 312 (313)
++. .+|+.|++|||..+ |+ ..++|||+|||||++ +|++|||||||||++||++|||||+|+. |.|||++.++||+
T Consensus 251 ~a~-~~f~~Y~~GVy~~~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~yp~ 328 (329)
T 3qt4_A 251 DAT-DELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD-NGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYPA 328 (329)
T ss_dssp CCC-GGGTTEEEEEECCSSCCSSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTTCEEEE
T ss_pred ecC-hhhhhccCceeecCCCCCCcCCEEEEEEEEEee-CCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCceeEee
Confidence 998 59999999999987 86 578999999999997 7999999999999999999999999997 9999999999998
Q ss_pred C
Q 041011 313 T 313 (313)
Q Consensus 313 ~ 313 (313)
|
T Consensus 329 v 329 (329)
T 3qt4_A 329 L 329 (329)
T ss_dssp C
T ss_pred C
Confidence 6
No 5
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}
Probab=100.00 E-value=1.4e-87 Score=616.02 Aligned_cols=305 Identities=36% Similarity=0.723 Sum_probs=266.3
Q ss_pred hhhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCCC
Q 041011 5 ASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNS 84 (313)
Q Consensus 5 ~~~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~~ 84 (313)
.+.+++.+|++|+++|+|.|.+.+|+.+|+.||++|+++|++||++.+. +..+|++|+|+|+|||.+||++++++.+
T Consensus 4 ~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~---g~~s~~~g~N~FaDlt~eEf~~~~~g~~ 80 (315)
T 2c0y_A 4 KDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSM---GMHSYDLGMNHLGDMTSEEVMSLMSSLR 80 (315)
T ss_dssp CCGGGHHHHHHHHHHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHT---TCCSEEECCCGGGGCCHHHHHHHTTSBC
T ss_pred chHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccc---cCcceEeccCccccCCHHHHHHHhcCCC
Confidence 4556788999999999999998889999999999999999999986321 1238999999999999999988887755
Q ss_pred ccccc-cCCccccCCCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhc-CC-C
Q 041011 85 MAITS-QHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCS-SN-G 161 (313)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~-~~-~ 161 (313)
+.... ....+......+||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+ .. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g~~~~LSeq~lvdC~~~~~~ 160 (315)
T 2c0y_A 81 VPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYG 160 (315)
T ss_dssp CCCGGGSCBCC------CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGT
T ss_pred CCccccCCccccCcccCCCCCeEecCCCCCcCCCcCcccCCCcHHHHHHHHHHHHHHHHhCCCcCcCHHHHHhhcccccC
Confidence 42211 111121111236999999999999999999999999999999999999999999999999999999998 32 4
Q ss_pred CCCCCCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccc
Q 041011 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTG 239 (313)
Q Consensus 162 ~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~ 239 (313)
+.||+||++..|++|+.++.||++|++|||.+..+.|... .....++.+|..++..++++|+++|+ +|||+|+|++..
T Consensus 161 ~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~ 240 (315)
T 2c0y_A 161 NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARH 240 (315)
T ss_dssp CCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCS
T ss_pred CCCCCCCCHHHHHHHHHHhCCcCchhcCCCccCCCCcccCCcccccccCCeEEeCCCCHHHHHHHHHHcCCEEEEEecCc
Confidence 7899999999999999976699999999999999999876 34567889999998778999999999 599999999975
Q ss_pred cccccccCceEeCC-CCCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcC-CCccccccceeeeeC
Q 041011 240 QDFKNYKGGIFNGV-CGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYPIT 313 (313)
Q Consensus 240 ~~f~~y~~Giy~~~-~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~-~~~Cgi~~~~~~p~~ 313 (313)
++|+.|++|||..+ |+..++|||+|||||++ +|++|||||||||++||++|||||+|+ .|.|||++.++||++
T Consensus 241 ~~f~~Y~~Gvy~~~~c~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~ 315 (315)
T 2c0y_A 241 PSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315 (315)
T ss_dssp HHHHTEEEEEECCTTCCSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred hhhhccCCCcccCCCCCCcCCEEEEEEEEeec-CCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCcCceeEEeeC
Confidence 68999999999988 98888999999999998 899999999999999999999999999 599999999999986
No 6
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Probab=100.00 E-value=2.8e-87 Score=613.72 Aligned_cols=303 Identities=37% Similarity=0.715 Sum_probs=266.1
Q ss_pred hhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCCCc
Q 041011 6 SISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSM 85 (313)
Q Consensus 6 ~~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~~~ 85 (313)
+.+++.+|++|+++|+|.|.+.+|+.+|+.||++|+++|++||++.+. +..+|++|+|+|+|||.+||++++++..+
T Consensus 4 ~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~---g~~~~~~g~N~FaDlt~eEf~~~~~g~~~ 80 (314)
T 1by8_A 4 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASL---GVHTYELAMNHLGDMTSEEVVQKMTGLKV 80 (314)
T ss_dssp -CTHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSCSEEECCCTTSSSCHHHHHHHSCCCCC
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccc---cCcceEEcccccccCCHHHHHHHhccCCC
Confidence 346788999999999999999899999999999999999999985321 11289999999999999999988877654
Q ss_pred ccccc--CCccccC-CCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCC
Q 041011 86 AITSQ--HSSFKYQ-NLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGN 162 (313)
Q Consensus 86 ~~~~~--~~~~~~~-~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~ 162 (313)
..... ...+... ....||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g~~~~LSeq~lvdC~~-~~ 159 (314)
T 1by8_A 81 PLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS-EN 159 (314)
T ss_dssp CSCCCCSSSSSBCCCCSSCCCSCCBSTTTTCSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHTTCT-TS
T ss_pred CcccccCCccccccccccCCCCeEeCCCCCCCCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcC-CC
Confidence 32211 1122211 12239999999999999999999999999999999999999999999999999999999997 58
Q ss_pred CCCCCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEcccc
Q 041011 163 SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQ 240 (313)
Q Consensus 163 ~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~ 240 (313)
.||+||++..|++|+.++.||++|++|||.+..+.|... .....++.+|..++..++++|+++|+ +|||+|+|++..+
T Consensus 160 ~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~ 239 (314)
T 1by8_A 160 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLT 239 (314)
T ss_dssp CGGGCCCSHHHHHHHHHTTCBCBTTTSCCCSSCCCCCCCGGGCCBCCSCEEECCSSCHHHHHHHHHHHCCEEEEECCCSH
T ss_pred CCCcCCCHHHHHHHHHHcCCcCcHhhCCCCCCCCCcCCCCccceeEECcEEEecCCCHHHHHHHHHHcCCEEEEEEeChH
Confidence 899999999999999976699999999999999999876 34567899999998778999999999 5999999999756
Q ss_pred ccccccCceEeCC-CCC-CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcC-CCccccccceeeeeC
Q 041011 241 DFKNYKGGIFNGV-CGT-QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYPIT 313 (313)
Q Consensus 241 ~f~~y~~Giy~~~-~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~-~~~Cgi~~~~~~p~~ 313 (313)
+|+.|++|||..+ |+. .++|||+|||||++ +|++|||||||||++||++|||||+|+ .|.|||++.++||++
T Consensus 240 ~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~ 314 (314)
T 1by8_A 240 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314 (314)
T ss_dssp HHHTEEEECBCCTTCCSSCCCEEEEEEEEEEE-TTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSCEEECC
T ss_pred HhhhccCceecCCCCCCCCCCeEEEEEEEecc-CCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCeeEEeeC
Confidence 8999999999988 886 78999999999998 899999999999999999999999999 599999999999986
No 7
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*
Probab=100.00 E-value=8.1e-87 Score=611.22 Aligned_cols=302 Identities=39% Similarity=0.765 Sum_probs=263.6
Q ss_pred hHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCCCcc
Q 041011 7 ISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSMA 86 (313)
Q Consensus 7 ~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~~~~ 86 (313)
..++++|++|+++|+|.| +.+|+.+|+.||++|+++|++||++... +..+|++|+|+|+|||.+||++++++.++.
T Consensus 6 ~~~~~~f~~~~~~~~k~Y-~~~E~~~R~~iF~~N~~~I~~~N~~~~~---g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~ 81 (316)
T 1cs8_A 6 HSLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYRE---GKHSFTMAMNAFGDMTSEEFRQVMNGFQNR 81 (316)
T ss_dssp GGGHHHHHHHHHHTTCCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHT---TCCSEEECCCTTTTCCHHHHHHHHCCBCCC
T ss_pred HHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhhcccc---CCcceEEccCccCCCCHHHHHHHhcCCCCC
Confidence 357889999999999999 7889999999999999999999985211 112899999999999999999888775542
Q ss_pred ccccCCccccCCCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC-CCCCC
Q 041011 87 ITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN-GNSGC 165 (313)
Q Consensus 87 ~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~-~~~gc 165 (313)
.......+......+||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+.. ++.||
T Consensus 82 ~~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~~~g~~gC 161 (316)
T 1cs8_A 82 KPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGC 161 (316)
T ss_dssp CCSCCEECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGG
T ss_pred ccccCccccCccccCCCCcEecCCCCCcCCCCcccCCccHHHHHHHHHHHHHHHHHcCCCcCcCHHHHHHhccccCCCCC
Confidence 22111112211223699999999999999999999999999999999999999999999999999999999863 47899
Q ss_pred CCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHhc-CCeEEEEEccccccc
Q 041011 166 VAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVSM-QPVSINIEGTGQDFK 243 (313)
Q Consensus 166 ~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~ 243 (313)
+||++..|++|+.++.||++|++|||.+..+.|... .....++.+|..|+. ++++|+++|++ |||+|+|++..++|+
T Consensus 162 ~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~-~~~~ik~~l~~~GPV~v~i~~~~~~f~ 240 (316)
T 1cs8_A 162 NGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFL 240 (316)
T ss_dssp GCBCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCCEEECCS-CHHHHHHHHHHHCCEEEEECCCSHHHH
T ss_pred CCCCHHHHHHHHHHhCCcCchhccCCCCCCCCcCCCCccceeEeccEEEeCC-CHHHHHHHHHhcCCEEEEEecCChhhc
Confidence 999999999999865699999999999999999876 445678999999986 89999999994 999999999756899
Q ss_pred cccCceEeCC-CCC-CCCeEEEEEEec---ccCCCceEEEEEcCCCCCCCCCceEEEEcCC-CccccccceeeeeC
Q 041011 244 NYKGGIFNGV-CGT-QLDHAVTIIGFG---TTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYPIT 313 (313)
Q Consensus 244 ~y~~Giy~~~-~~~-~~~Hav~iVGyg---~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~~~~~p~~ 313 (313)
.|++|||..+ |+. .++|||+||||| ++++|++|||||||||++||++|||||+|+. |.|||++.++||++
T Consensus 241 ~Y~~Gvy~~~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~ 316 (316)
T 1cs8_A 241 FYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316 (316)
T ss_dssp TEEEEEECCTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred cccCceECCCCCCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCCccCccceeeEeeC
Confidence 9999999987 885 789999999999 5547899999999999999999999999996 89999999999986
No 8
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}
Probab=100.00 E-value=2e-85 Score=600.51 Aligned_cols=295 Identities=37% Similarity=0.728 Sum_probs=257.9
Q ss_pred HHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcC-CCccccc
Q 041011 11 EKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAG-NSMAITS 89 (313)
Q Consensus 11 ~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~-~~~~~~~ 89 (313)
++|++|+++|+|.|.+.+|+.+| .||++|+++|++||++... +..+|++|+|+|+|||.+||++++++ .+.....
T Consensus 3 ~~f~~~~~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~---g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~~~ 78 (310)
T 2o6x_A 3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDL---GLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDI 78 (310)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHT---TSSSEEECCCTTTTSCHHHHHHHHCCCCCCGGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhcc---CCCcEEEeccccCCCCHHHHHHHhcCCCCCcccc
Confidence 57999999999999988899999 9999999999999986311 12289999999999999999988877 4432211
Q ss_pred c--CCccccCCCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC-CCCCCC
Q 041011 90 Q--HSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN-GNSGCV 166 (313)
Q Consensus 90 ~--~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~-~~~gc~ 166 (313)
. ...+...+. +||++||||++|+|+||||||.||||||||++++||++++++++..+.||+|+|+||+.. ++.||+
T Consensus 79 ~~~~~~~~~~~~-~lP~~~DwR~~g~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g~~~~LS~q~lvdC~~~~~~~gC~ 157 (310)
T 2o6x_A 79 LSHGVPYEANNR-AVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCG 157 (310)
T ss_dssp SCSSEECCC-----CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSSCCCBCHHHHHHHCGGGTCCGGG
T ss_pred cccCCccccccC-CCCCeEecCcCCCCCCcccCCCCCccHHHHhHHHHHHHHHHHhCCCcCcCHHHHHHhhhccCCCCCC
Confidence 1 111221222 699999999999999999999999999999999999999999999999999999999863 478999
Q ss_pred CCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEcccccccc
Q 041011 167 AGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDFKN 244 (313)
Q Consensus 167 gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~ 244 (313)
||++..|++|+. +.||++|++|||.+..+.|... .....++.+|..|+..++++|+++|+ +|||+|+|++. .+|+.
T Consensus 158 GG~~~~a~~yi~-~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~~GPV~v~i~~~-~~f~~ 235 (310)
T 2o6x_A 158 GGLMENAYQYLK-QFGLETESSYPYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVE-SDFMM 235 (310)
T ss_dssp CCCHHHHHHHHT-TSCBCBTTTSCCCSSCCCCCCCGGGCCEEEEEEEEECSCCHHHHHHHHHHHCCEEEEECCC-HHHHT
T ss_pred CCCHHHHHHHHH-HCCcCchhcCCCCCCCCCccCCCCCCceEeCeEEEeCCCCHHHHHHHHHhcCCeEEEEecc-hhhhh
Confidence 999999999998 5599999999999999999876 34567899999998778999999999 59999999998 69999
Q ss_pred ccCceEeCC-CCC-CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC-CccccccceeeeeC
Q 041011 245 YKGGIFNGV-CGT-QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYPIT 313 (313)
Q Consensus 245 y~~Giy~~~-~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~~~~~p~~ 313 (313)
|++|||..+ |+. .++|||+|||||++ +|++|||||||||++||++|||||+|+. |.|||+++++||++
T Consensus 236 Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~~~p~~ 306 (310)
T 2o6x_A 236 YRSGIYQSQTCSPLRVNHAVLAVGYGTQ-GGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV 306 (310)
T ss_dssp EEEEEECCSSCCTTCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSEEEEEE
T ss_pred CCCceecCCCCCCCCCCEEEEEEEEecc-CCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCccceeeEEEe
Confidence 999999976 874 78999999999998 7999999999999999999999999996 89999999999974
No 9
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1
Probab=100.00 E-value=1.4e-81 Score=574.36 Aligned_cols=282 Identities=28% Similarity=0.507 Sum_probs=248.4
Q ss_pred HHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCCCccccc--
Q 041011 12 KHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSMAITS-- 89 (313)
Q Consensus 12 ~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~~~~~~~-- 89 (313)
+|++|+++|+|.|.+.+|+.+|+.||++|+++|++ |+ + |+|+|+|||.+||++++++.......
T Consensus 7 ~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~-N~----------~---g~N~F~Dlt~eEf~~~~~~~~~~~~~~~ 72 (312)
T 1xkg_A 7 TFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NG----------G---AINHLSDLSLDEFKNRFLMSAEAFEHLK 72 (312)
T ss_dssp SHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH-HC----------C---CCCTTTTSCHHHHHHHHSBCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh-cc----------C---CCCcccCCCHHHHHHHhcCCCCcccccc
Confidence 59999999999999989999999999999999999 62 3 89999999999999877764321110
Q ss_pred cCCccccC-----CCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCC
Q 041011 90 QHSSFKYQ-----NLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSG 164 (313)
Q Consensus 90 ~~~~~~~~-----~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~g 164 (313)
....+... ...+||++||||++|+|+||||||.||||||||++++||+++++++++.+.||+|+|+||+. ..|
T Consensus 73 ~~~~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~--~~G 150 (312)
T 1xkg_A 73 TQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCAS--QHG 150 (312)
T ss_dssp HHHC-----CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC--SST
T ss_pred CCcccccccccccccccCCCccccccCCCcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHHHHhccC--CCC
Confidence 00111111 12379999999999999999999999999999999999999999999999999999999983 389
Q ss_pred CCCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHhc--CCeEEEEEcccc-
Q 041011 165 CVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVSM--QPVSINIEGTGQ- 240 (313)
Q Consensus 165 c~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~~--gPV~v~~~~~~~- 240 (313)
|+||++..|++|+.+. ||++|++|||.+..+.|. . ....+++.+|..|+..++++|+++|++ |||+|+|++...
T Consensus 151 C~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~C~-~~~~~~~~i~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~ 228 (312)
T 1xkg_A 151 CHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSCR-RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLD 228 (312)
T ss_dssp TBCCCHHHHHHHHHHH-CEEBGGGSCCCSSCCCCC-CCSSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHH
T ss_pred CCCCCHHHHHHHHHHc-CCCccccCCccCCCCCCC-CCCCceEEEeeEEEeCCCCHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999986 999999999999999998 5 445788999999987789999999985 999999999833
Q ss_pred ccccccCceEeCC-CC-C-CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCCccccccceeeeeC
Q 041011 241 DFKNYKGGIFNGV-CG-T-QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313 (313)
Q Consensus 241 ~f~~y~~Giy~~~-~~-~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~~ 313 (313)
+|+.|++|||..+ |+ . . +|||+|||||++ +|++|||||||||++||++|||||+|+.|.|||++.++||++
T Consensus 229 ~f~~Y~~GVy~~~~c~~~~~-~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~ 302 (312)
T 1xkg_A 229 AFRHYDGRTIIQRDNGYQPN-YHAVNIVGYSNA-QGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 302 (312)
T ss_dssp HHHTCCSSSCBCCCCSSCCE-EEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEEC
T ss_pred cccccCCcEEcCCCCCCCcC-ceEEEEEEEecc-CCceEEEEEeCCCCcccCCcEEEEEcCCCcccccceeEEeec
Confidence 8999999999986 87 4 6 999999999997 899999999999999999999999999999999999999985
No 10
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Probab=100.00 E-value=3.6e-74 Score=545.87 Aligned_cols=274 Identities=27% Similarity=0.546 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEE-cccCCCCCHHHHHHHhcCCCccccc-cCCcc---ccCCCCCC
Q 041011 28 LEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLG-TNQFSDLTNAEFRASYAGNSMAITS-QHSSF---KYQNLTQV 102 (313)
Q Consensus 28 ~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g-~N~fsd~t~~E~~~~~~~~~~~~~~-~~~~~---~~~~~~~l 102 (313)
.|+.+|++||++|+++|++||++ +. +|+++ +|+|+|||.+||++++++.++.... ...+. ......+|
T Consensus 135 ~~~~~R~~if~~N~~~I~~~N~~-~~------~~~~~~~n~faDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (441)
T 3pdf_A 135 SQEKYSNRLYKYDHNFVKAINAI-QK------SWTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILFL 207 (441)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred hhHHHHHHHHHHHHHHHHHHHcc-CC------ceEeecccccccCCHHHHHHHhCCCcccccccccCccccccccccccC
Confidence 56789999999999999999986 45 89998 8999999999999988765432211 01111 11233579
Q ss_pred CCeeecCCCC---CcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCcc--ccCHHHHhhhcCCCCCCCCCCChHHH-HHH
Q 041011 103 PTSMDWREKG---AVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLI--RLSEQQLLDCSSNGNSGCVAGKSDIA-FKY 176 (313)
Q Consensus 103 P~~~Dwr~~g---~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~--~LS~q~l~dc~~~~~~gc~gG~~~~a-~~~ 176 (313)
|++||||+.+ +|+||||||.||||||||++++||++++++++..+ .||+|+|+||+. .+.||+||++..+ ++|
T Consensus 208 P~s~DwR~~~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~-~~~GC~GG~~~~aa~~y 286 (441)
T 3pdf_A 208 PTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ-YAQGCEGGFPYLIAGKY 286 (441)
T ss_dssp CSCEETTCBTTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCT-TSCTTBCCCHHHHTTHH
T ss_pred CCCEECCcCCCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhcc-CCCCCCCCchhHHHHHH
Confidence 9999999964 89999999999999999999999999999998765 599999999997 4889999999987 899
Q ss_pred HHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcC----CchHHHHHHHHh-cCCeEEEEEccccccccccCceE
Q 041011 177 IIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLP----SGDEQALLKAVS-MQPVSINIEGTGQDFKNYKGGIF 250 (313)
Q Consensus 177 ~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~----~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy 250 (313)
+.++ ||++|++|||.+..+.|... ......+.+|..++ ..++++|+++|+ +|||+|+|++. ++|++|++|||
T Consensus 287 i~~~-Gi~tE~~yPY~~~~~~C~~~~~~~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~-~~F~~Y~sGVy 364 (441)
T 3pdf_A 287 AQDF-GLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIY 364 (441)
T ss_dssp HHHT-CBCBGGGSCCCSSCCCSCCCSSCCCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCC-GGGGGCCSSEE
T ss_pred HHhc-CCCcHHHeeecccCCCCCCccccceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEec-ccccccCCceE
Confidence 9887 99999999999999999876 45566788888885 357899999998 69999999998 79999999999
Q ss_pred eCC-CC------CCCCeEEEEEEeccc-CCCceEEEEEcCCCCCCCCCceEEEEcCCCccccccceeee
Q 041011 251 NGV-CG------TQLDHAVTIIGFGTT-EDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYP 311 (313)
Q Consensus 251 ~~~-~~------~~~~Hav~iVGyg~~-~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p 311 (313)
.++ |. ..++|||+|||||++ ++|++|||||||||++|||+|||||+|+.|.|||+++++.+
T Consensus 365 ~~~~~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~ 433 (441)
T 3pdf_A 365 HHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 433 (441)
T ss_dssp CCC---CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEE
T ss_pred ecCCCCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEe
Confidence 887 32 247999999999986 47999999999999999999999999999999999988854
No 11
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*
Probab=100.00 E-value=5e-73 Score=521.00 Aligned_cols=269 Identities=26% Similarity=0.500 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcc-cCCCCCHHHHHHHhcCCCccccc----cCCccccC-CCCCCCC
Q 041011 31 DMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTN-QFSDLTNAEFRASYAGNSMAITS----QHSSFKYQ-NLTQVPT 104 (313)
Q Consensus 31 ~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N-~fsd~t~~E~~~~~~~~~~~~~~----~~~~~~~~-~~~~lP~ 104 (313)
+.|+..+..+.++|++||++.+. +|++++| +|+|||.+||++++ +..+.... ...++... ...+||+
T Consensus 2 ~~~~~a~~~~~~~i~~~N~~~~~------~~~~~~n~~f~dlt~eE~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~lP~ 74 (325)
T 3hhi_A 2 LVAEDAPVLSKAFVDRVNRLNRG------IWKAKYDGVMQNITLREAKRLN-GVIKKNNNASILPKRRFTEEEARAPLPS 74 (325)
T ss_dssp -------------------------------------------------------------CCSCBCCCCHHHHHCCCCS
T ss_pred CcccccccccHHHHHHHHhCCCC------ceEEecccccccCCHHHHHHHh-CCCCCCcccccccCccccccccccCCCC
Confidence 45777888899999999987556 8999999 89999999998764 43321111 01111111 1247999
Q ss_pred eeecCCC----CCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCC-ccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHH
Q 041011 105 SMDWREK----GAVTSIKNQGGCAACWAFSAVAAVEGITQISSGN-LIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIK 179 (313)
Q Consensus 105 ~~Dwr~~----g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~-~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~ 179 (313)
+||||++ |.|+||||||.||||||||++++||++++++++. .+.||+|+|+||+...+.||+||++..|++|+++
T Consensus 75 s~DwR~~w~~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~~~~~GC~GG~~~~A~~yi~~ 154 (325)
T 3hhi_A 75 SFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSS 154 (325)
T ss_dssp CEEHHHHSTTCTTTTCCCBCCSSBCHHHHHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCGGGBCTTBCBCHHHHHHHHHH
T ss_pred cEehhHhcCCCCccccccCCCCccccHHHHHHHHHHHHHHHHhCCCccccCHHHHHHhccCCCCCCCCCCHHHHHHHHHH
Confidence 9999998 8999999999999999999999999999999987 8999999999998744689999999999999999
Q ss_pred hCCcCCCCCccCC-CC----------CCCcccC-----------------CccceeecceEEcCCchHHHHHHHHh-cCC
Q 041011 180 NQGIATEADYPYH-QV----------QGSCGRE-----------------HAAAAKISSYEVLPSGDEQALLKAVS-MQP 230 (313)
Q Consensus 180 ~~Gi~~e~~yPy~-~~----------~~~C~~~-----------------~~~~~~i~~~~~v~~~~~~~i~~~l~-~gP 230 (313)
+ |+++|++|||. +. .+.|... ......+..|. + .++++|+++|+ +||
T Consensus 155 ~-Gi~~e~~yPY~~~~c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~y~-v--~~~~~i~~~i~~~GP 230 (325)
T 3hhi_A 155 T-GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYA-L--QGEDDYMRELFFRGP 230 (325)
T ss_dssp T-CBCBTTTSCCSSCCCBSSSCCTTCCCBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEEEE-E--CSHHHHHHHHHHHCC
T ss_pred h-CCCcccccCCccccccccccccccCCCCCCcccCCcchhhcccccccccceEEeecceE-e--CCHHHHHHHHHHCCC
Confidence 8 99999999998 32 2566511 01123456676 4 58999999997 699
Q ss_pred eEEEEEccccccccccCceEeCCCCC-CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCCcccccccee
Q 041011 231 VSINIEGTGQDFKNYKGGIFNGVCGT-QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAA 309 (313)
Q Consensus 231 V~v~~~~~~~~f~~y~~Giy~~~~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~ 309 (313)
|+|+|++. ++|+.|++|||..+|+. .++|||+|||||++ +|++|||||||||++|||+|||||+|+.|+|||+++++
T Consensus 231 V~v~i~~~-~~f~~Y~~GVy~~~~~~~~~~HaV~iVGyG~~-~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~ 308 (325)
T 3hhi_A 231 FEVAFDVY-EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGS 308 (325)
T ss_dssp EEEEEEEE-HHHHTCCSSEECCCSCCEEEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEE
T ss_pred EEEEEEec-cccccccCceecCCCCCCCCCEEEEEEEEEec-CCceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceE
Confidence 99999997 79999999999988654 45999999999987 89999999999999999999999999999999999998
Q ss_pred eee
Q 041011 310 YPI 312 (313)
Q Consensus 310 ~p~ 312 (313)
+++
T Consensus 309 ~g~ 311 (325)
T 3hhi_A 309 AGI 311 (325)
T ss_dssp EEE
T ss_pred Eee
Confidence 765
No 12
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A
Probab=100.00 E-value=2.7e-69 Score=495.18 Aligned_cols=260 Identities=28% Similarity=0.578 Sum_probs=211.4
Q ss_pred HHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCCCccccccCCccccCCCCCCCCeeecCCC----CCcC
Q 041011 40 NLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREK----GAVT 115 (313)
Q Consensus 40 n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~----g~v~ 115 (313)
+.++|++||++ +. +|++++| |+|+|.||++. +++.++.......++......+||++||||++ +.|+
T Consensus 11 ~~~~i~~~N~~-~~------~~~~~~n-f~~~~~e~~~~-~lg~~~~~~~~~~~~~~~~~~~lP~s~DwR~~~~~c~~vt 81 (317)
T 3pbh_A 11 SDELVNYVNKR-NT------TWQAGHN-FYNVDMSYLKR-LCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIK 81 (317)
T ss_dssp CHHHHHHHHHH-TC------SEEECCC-CSSCCHHHHHH-TCCBCTTCCCCSEEECCCSCCCCCSSEEHHHHCTTCGGGT
T ss_pred cHHHHHHHHCC-CC------CeEEeec-cccCCHHHHHH-HcCCCCCccccCcccccccccCCCCCEechhccCCCCCcC
Confidence 46789999976 56 8999999 99998887764 45544332221112222223579999999987 6899
Q ss_pred cccCCCCCccHHHHHHHHHHhHhHHhhcCC--ccccCHHHHhhhcC-CCCCCCCCCChHHHHHHHHHhCCcCCCCCc---
Q 041011 116 SIKNQGGCAACWAFSAVAAVEGITQISSGN--LIRLSEQQLLDCSS-NGNSGCVAGKSDIAFKYIIKNQGIATEADY--- 189 (313)
Q Consensus 116 pV~dQg~cGsCwAfA~~~~le~~~~~~~~~--~~~LS~q~l~dc~~-~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~y--- 189 (313)
||||||.||||||||++++||++++++++. .+.||+|+|+||+. ..+.||+||++..|++|++++ ||++|.+|
T Consensus 82 pVkdQg~CGSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~~~-Gi~te~~Y~~~ 160 (317)
T 3pbh_A 82 EIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESH 160 (317)
T ss_dssp CCCBCCSSCCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHHHT-CEEBBCSTTCC
T ss_pred CccccCCccchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHHHHHHHHHh-CCCcchhccCC
Confidence 999999999999999999999999999874 79999999999986 357899999999999999998 99999888
Q ss_pred ----cCCC---------CCCCcccC---------Cccce---------eecceEEcCCchHHHHHHHHh-cCCeEEEEEc
Q 041011 190 ----PYHQ---------VQGSCGRE---------HAAAA---------KISSYEVLPSGDEQALLKAVS-MQPVSINIEG 237 (313)
Q Consensus 190 ----Py~~---------~~~~C~~~---------~~~~~---------~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~ 237 (313)
||.. ..+.|... ....+ .......++ .++++|+++|+ +|||+|+|++
T Consensus 161 ~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~-~~e~~i~~~i~~~GPV~v~i~~ 239 (317)
T 3pbh_A 161 VGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVS-NSEKDIMAEIYKNGPVEGAFSV 239 (317)
T ss_dssp CBSSCCCSCCCCCCCTTCCSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEEC-SCHHHHHHHHHHHCCEEEEEEE
T ss_pred CCCcCcccCcccccccCcCCCCCCcCCCCcccccccCCCccceeeeeeeeeecccCC-cHHHHHHHHHHHCCCEEEEEEe
Confidence 9984 34455421 00001 111223454 57899999998 6999999999
Q ss_pred cccccccccCceEeCCCCCC-CCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCCccccccceeeee
Q 041011 238 TGQDFKNYKGGIFNGVCGTQ-LDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPI 312 (313)
Q Consensus 238 ~~~~f~~y~~Giy~~~~~~~-~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~ 312 (313)
. ++|++|++|||.++|+.. ++|||+|||||++ +|++|||||||||++|||+|||||+|+.|+|||++.++.++
T Consensus 240 ~-~~f~~Y~~GVy~~~~~~~~~~HaV~iVGyG~~-~g~~YWivkNSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~~ 313 (317)
T 3pbh_A 240 Y-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI 313 (317)
T ss_dssp E-GGGGGEEEEEECCCSCCEEEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECC
T ss_pred c-ccccCCCCcEEccCCCCCCCCEEEEEEEEEEe-CCeeEEEEEcCCCCCcCCCcEEEEEcCCCcccCCCceEeee
Confidence 7 899999999999987754 4999999999987 89999999999999999999999999999999999887653
No 13
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1
Probab=100.00 E-value=2.5e-68 Score=464.25 Aligned_cols=210 Identities=49% Similarity=0.993 Sum_probs=197.2
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+.. +.||+||++..|++|+.+++
T Consensus 1 lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~~~~~~ 79 (215)
T 1iwd_A 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA-SHGCNGGWMNNAFQYIITNG 79 (215)
T ss_dssp CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHHT
T ss_pred CCCcEeCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcCC-CCCCCCCCHHHHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999999999873 78999999999999999877
Q ss_pred CcCCCCCccCCCCCCCcccCCccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCCCeE
Q 041011 182 GIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHA 261 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Ha 261 (313)
|+++|++|||....+.|.......+++.+|..++..++++|+++|++|||+++|++...+|+.|++|||..+|+..++||
T Consensus 80 Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~~~~Ha 159 (215)
T 1iwd_A 80 GIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHG 159 (215)
T ss_dssp CBCBTTTSCCCSSCCCCCTTCCCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCCCCCEE
T ss_pred CcccccccCccCCCCCCCCCCCceEEeCcEEEeCCCcHHHHHHHHHhCCEEEEEecCCcchhhcCCceECCCCCCcCCEE
Confidence 99999999999999999876556788999999987789999999999999999999844899999999998898888999
Q ss_pred EEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 262 VTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 262 v~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
|+|||||++ +|++|||||||||++||++|||||+|+. |+|||+++++||++
T Consensus 160 V~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~ 214 (215)
T 1iwd_A 160 VVIVGYGTQ-SGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK 214 (215)
T ss_dssp EEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred EEEEEEecc-CCccEEEEEeCCCCCcCCCcEEEEEcCCCCCCCCCCccccceeeee
Confidence 999999998 7899999999999999999999999996 89999999999985
No 14
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Probab=100.00 E-value=3.2e-68 Score=465.51 Aligned_cols=211 Identities=52% Similarity=1.029 Sum_probs=197.0
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC-CCCCCCCCChHHHHHHHHHh
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN-GNSGCVAGKSDIAFKYIIKN 180 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~-~~~gc~gG~~~~a~~~~~~~ 180 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+.. ++.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~lE~~~~i~~~~~~~LS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~ 80 (220)
T 3p5u_A 1 LPDYVDWRSSGAVVDIKDQGQCGSAWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINN 80 (220)
T ss_dssp CCSCEETTTTTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCCSSCCTTBCCCHHHHHHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCCCcCHhHcEECCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999975 37899999999999999988
Q ss_pred CCcCCCCCccCCCCCCCcccC--CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCC
Q 041011 181 QGIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQL 258 (313)
Q Consensus 181 ~Gi~~e~~yPy~~~~~~C~~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~ 258 (313)
+|+++|++|||....+.|... ....+++.+|..++..++++|+++|.+|||+++|++..++|+.|++|||..+|+...
T Consensus 81 ~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~l~~~l~~GPV~v~~~~~~~~f~~Y~~Giy~~~~~~~~ 160 (220)
T 3p5u_A 81 GGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAV 160 (220)
T ss_dssp TCBCBTTTSCCCSSCCCCCHHHHTCCSBCCCEEEECCTTCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCCCCCSC
T ss_pred CCcCcccccccccCCCCcCcCCCCCceEEEccEEEeCCCcHHHHHHHHhcCCEEEEEecCchhhccccCceECCCCCCcc
Confidence 799999999999999999865 334578999999987889999999988999999999757899999999998898889
Q ss_pred CeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCC---ccccccceeeeeC
Q 041011 259 DHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEG---LCGIGTQAAYPIT 313 (313)
Q Consensus 259 ~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~---~Cgi~~~~~~p~~ 313 (313)
+|||+|||||++ +|++|||||||||++||++|||||+|+.| +|||++.++||++
T Consensus 161 ~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~Cgi~~~~~~p~~ 217 (220)
T 3p5u_A 161 DHAVTIVGYGTE-GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPVK 217 (220)
T ss_dssp CEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECCCCTTCGGGTTSSCEEEEC
T ss_pred ceEEEEEEEecC-CCceEEEEECCCCCCcccCCEEEEECCCCCCCccCcccccceEEE
Confidence 999999999986 78999999999999999999999999976 9999999999985
No 15
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Probab=100.00 E-value=4.2e-68 Score=464.85 Aligned_cols=211 Identities=51% Similarity=1.054 Sum_probs=197.2
Q ss_pred CCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHh
Q 041011 101 QVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKN 180 (313)
Q Consensus 101 ~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~ 180 (313)
+||++||||++|+|+||||||.||||||||++++||++++++++..++||+|+|+||+.. +.||+||++..|++|++++
T Consensus 2 ~lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~y~~~~ 80 (221)
T 1cqd_A 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA-NHGCRGGWMNPAFQFIVNN 80 (221)
T ss_dssp -CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT-SCTTBCCCHHHHHHHHHHH
T ss_pred CCCCcCcCCCCCCcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCCC-CCCCCCCCHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999999999974 7899999999999999987
Q ss_pred CCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCCC
Q 041011 181 QGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLD 259 (313)
Q Consensus 181 ~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~ 259 (313)
+|+++|++|||....+.|... ....+++.+|..++..++++|+++|++|||+|+|++..++|+.|++|||..+|+..++
T Consensus 81 ~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Giy~~~~~~~~~ 160 (221)
T 1cqd_A 81 GGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISAN 160 (221)
T ss_dssp TSBCBTTTSCCCSSCCCCCSSSCCCSBCCSEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCCCCCCCC
T ss_pred CCccccccCCccCCCCCcCCCCCCceEEeccEEEeCCchHHHHHHHHHhCCEEEEEeccCcccccccCccccCCCCCcCC
Confidence 799999999999999999876 4556889999999877899999999999999999987568999999999988988899
Q ss_pred eEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcC----CCccccccceeeeeC
Q 041011 260 HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRD----EGLCGIGTQAAYPIT 313 (313)
Q Consensus 260 Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~----~~~Cgi~~~~~~p~~ 313 (313)
|||+|||||++ +|++|||||||||++||++|||||+|+ .|+|||+++++||++
T Consensus 161 HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~ 217 (221)
T 1cqd_A 161 HALTVVGYGTE-NDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVK 217 (221)
T ss_dssp EEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred eEEEEEEEccc-CCCcEEEEEeCCCCCcccCCEEEEEcCCCCCCcccceeeeeeEEEe
Confidence 99999999997 789999999999999999999999998 489999999999985
No 16
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*
Probab=100.00 E-value=4.9e-68 Score=462.88 Aligned_cols=209 Identities=48% Similarity=0.976 Sum_probs=196.0
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+. .+.||+||++..|++|+.++
T Consensus 1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~yi~~~- 78 (216)
T 1ppo_A 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER-RSHGCKGGYPPYALEYVAKN- 78 (216)
T ss_dssp CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCS-SSCTTBCCCHHHHHHHHHHH-
T ss_pred CCCcCcCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccC-CCCCCCCCCHHHHHHHHHHh-
Confidence 7999999999999999999999999999999999999999999999999999999996 47899999999999999998
Q ss_pred CcCCCCCccCCCCCCCcccC--CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCCC
Q 041011 182 GIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLD 259 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~ 259 (313)
|+++|++|||....+.|... ....+++.+|..++..++++|+++|++|||+++|++..++|+.|++|||..+|++.++
T Consensus 79 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~~~~~~~~f~~Y~~Giy~~~~~~~~~ 158 (216)
T 1ppo_A 79 GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVD 158 (216)
T ss_dssp CBCBTTTSCCCSSCCCCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCSCCSCCC
T ss_pred CcCccccCCccCCCCCcCCCCCCCceEEeccEEEECCCCHHHHHHHHHhCCEEEEEecCChhhhhcCCceECCCCCCCCC
Confidence 89999999999999999876 2457889999999877899999999999999999996578999999999988988889
Q ss_pred eEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 260 HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 260 Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
|||+|||||++ +|++|||||||||++||++|||||+|+. |+|||+++++||++
T Consensus 159 HaV~iVGyg~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~~p~~ 215 (216)
T 1ppo_A 159 HAVTAVGYGKS-GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215 (216)
T ss_dssp EEEEEEEEEEE-TTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred EEEEEEEeecc-CCccEEEEEeCCCCCcccCcEEEEEcCCCCCCCcCccccceeeEee
Confidence 99999999998 7899999999999999999999999984 89999999999985
No 17
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...
Probab=100.00 E-value=6.3e-68 Score=462.26 Aligned_cols=210 Identities=44% Similarity=0.878 Sum_probs=196.4
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+. .+.||+||++..|++|+.++.
T Consensus 1 lP~~~Dwr~~~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~~~~~ 79 (215)
T 3kwz_A 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS-ENDGCGGGYMTNAFQYVQKNR 79 (215)
T ss_dssp CTTCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHHT
T ss_pred CCCCCccCcCCCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcC-CCCCCCCCCHHHHHHHHHHhC
Confidence 7999999999999999999999999999999999999999999999999999999997 588999999999999999888
Q ss_pred CcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccccccccccCceEeCC-CC-CC
Q 041011 182 GIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGV-CG-TQ 257 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~-~~-~~ 257 (313)
|+++|++|||....+.|... .....++.+|..++..++++|+++|+ +|||+++|++..++|+.|++|||..+ |+ ..
T Consensus 80 Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~ 159 (215)
T 3kwz_A 80 GIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDN 159 (215)
T ss_dssp CEEBTTTSCCCSSCCCCCCCGGGEEECCCCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTTC
T ss_pred CccccccCCCccCCCccccCCCCceeEecceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECCCCCCCCh
Confidence 99999999999999999876 45567899999998778999999998 59999999997568999999999877 75 47
Q ss_pred CCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC-CccccccceeeeeC
Q 041011 258 LDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYPIT 313 (313)
Q Consensus 258 ~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~~~~~p~~ 313 (313)
++|||+|||||++ ++++|||||||||++||++|||||+|+. |+|||+++++||+|
T Consensus 160 ~~HaV~iVGyg~~-~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~~~p~~ 215 (215)
T 3kwz_A 160 LNHAVLAVGYGIQ-KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215 (215)
T ss_dssp CCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEECC
T ss_pred hhCEEEEEEEecc-CCceEEEEECCcCcccccCCEEEEecCCCCccCcCCceeeeeC
Confidence 8999999999987 7899999999999999999999999996 99999999999986
No 18
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*
Probab=100.00 E-value=1e-67 Score=461.51 Aligned_cols=209 Identities=48% Similarity=0.975 Sum_probs=195.8
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||++++++++..++||+|+|+||+. .+.||+||++..|++|+.++
T Consensus 1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~~~~~~- 78 (218)
T 1yal_A 1 YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDK-HSYGCKGGYQTTSLQYVANN- 78 (218)
T ss_dssp CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHH-
T ss_pred CCCcCcCCCCCCCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhcC-CCCCCCCCCHHHHHHHHHHc-
Confidence 7999999999999999999999999999999999999999999999999999999985 47899999999999999998
Q ss_pred CcCCCCCccCCCCCCCcccC--CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCCC
Q 041011 182 GIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLD 259 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~ 259 (313)
|+++|++|||....+.|... ....+++.+|..++..++++|+++|++|||+++|++..++|+.|++|||..+|++.++
T Consensus 79 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Giy~~~~~~~~~ 158 (218)
T 1yal_A 79 GVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLD 158 (218)
T ss_dssp CBCBTTTSCCCSSCCCCCGGGCCSCCBCCSEEEECCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCCSCCC
T ss_pred CCCccccccccCCCCCcccCcCCCceEEEeeEEEeCCCCHHHHHHHHHhCCEEEEEeccchhccccCCceECCCCCCCCC
Confidence 89999999999999999875 2456889999999877899999999999999999996578999999999988988889
Q ss_pred eEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 260 HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 260 Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
|||+|||||++ +|++|||||||||++|||+|||||+|+. |+|||+++++||++
T Consensus 159 HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~ 215 (218)
T 1yal_A 159 HAVTAVGYGTS-DGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215 (218)
T ss_dssp EEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEEC
T ss_pred EEEEEEEeecc-CCccEEEEEeCCCCCcccCcEEEEECCCCCCCCccccccceeeEEE
Confidence 99999999998 6899999999999999999999999984 89999999999985
No 19
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...
Probab=100.00 E-value=6.3e-68 Score=463.20 Aligned_cols=211 Identities=44% Similarity=0.920 Sum_probs=196.6
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhc-CC-CCCCCCCCChHHHHHHHHH
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCS-SN-GNSGCVAGKSDIAFKYIIK 179 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~-~~-~~~gc~gG~~~~a~~~~~~ 179 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+ .. .+.||+||++..|++|+.+
T Consensus 2 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~~~~~~ 81 (218)
T 3ovx_A 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID 81 (218)
T ss_dssp CCSCEEGGGGTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHHHHHHH
T ss_pred CCCCCCcccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999998 32 4789999999999999987
Q ss_pred hCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccccccccccCceEeCC-CCC
Q 041011 180 NQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGV-CGT 256 (313)
Q Consensus 180 ~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~-~~~ 256 (313)
+.|+++|++|||....+.|... .....++.+|..++..++++|+++|+ +|||+++|++..++|+.|++|||..+ |..
T Consensus 82 ~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~ 161 (218)
T 3ovx_A 82 NKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ 161 (218)
T ss_dssp HTCEEBTTTSCCCSSCCCCCCCGGGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECCTTCCS
T ss_pred hCCcCcccccCccCCCCcccCCCccceeeeccEEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecCCCCCc
Confidence 6699999999999999999876 55567889999998778999999998 59999999997568999999999987 877
Q ss_pred CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC-CccccccceeeeeC
Q 041011 257 QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYPIT 313 (313)
Q Consensus 257 ~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~~~~~p~~ 313 (313)
.++|||+|||||++ +|++|||||||||++||++|||||+|+. |+|||+++++||+|
T Consensus 162 ~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~ 218 (218)
T 3ovx_A 162 NVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218 (218)
T ss_dssp CCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred ccCcEEEEEEEecc-CCceEEEEECCCCCccccCCEEEEecCCCCcccccCceeeeeC
Confidence 89999999999997 7899999999999999999999999996 99999999999986
No 20
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1
Probab=100.00 E-value=1.4e-67 Score=463.76 Aligned_cols=213 Identities=55% Similarity=1.070 Sum_probs=197.3
Q ss_pred CCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHh
Q 041011 101 QVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKN 180 (313)
Q Consensus 101 ~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~ 180 (313)
+||++||||++|+|+||||||.||||||||++++||++++++++..++||+|+|+||+...+.||+||++..|++|+.++
T Consensus 1 ~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~~gC~GG~~~~a~~y~~~~ 80 (229)
T 1s4v_A 1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQR 80 (229)
T ss_dssp CCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHHHH
T ss_pred CCCCCEeCCCCCCCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCCCCCCCCCCCCHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999986447899999999999999987
Q ss_pred CCcCCCCCccCCCCCCCcccC--CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCC
Q 041011 181 QGIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQL 258 (313)
Q Consensus 181 ~Gi~~e~~yPy~~~~~~C~~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~ 258 (313)
+|+++|++|||....+.|... ....+++.+|..++..++++|+++|.+|||+++|++..++|+.|++|||..+|+..+
T Consensus 81 ~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Giy~~~c~~~~ 160 (229)
T 1s4v_A 81 GGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTEL 160 (229)
T ss_dssp TCBCBTTTSCCCSSCCCCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCCCC
T ss_pred CCccccccCCccCCCCCCCCCCCCCcEEEeeeEEEeCCccHHHHHHHHhcCCEEEEEEeCcHHHhhCCCcEECCCCCCCC
Confidence 799999999999999999865 345678999999987789999999999999999999547899999999998898888
Q ss_pred CeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 259 DHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 259 ~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
+|||+|||||++.+|++|||||||||++||++|||||+|+. |+|||+++++||++
T Consensus 161 ~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~ 219 (229)
T 1s4v_A 161 DHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK 219 (229)
T ss_dssp CEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred CeEEEEEEeccccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCCCCcCcccccceeeEe
Confidence 99999999999844899999999999999999999999984 89999999999985
No 21
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Probab=100.00 E-value=3.5e-67 Score=454.83 Aligned_cols=205 Identities=50% Similarity=1.025 Sum_probs=192.3
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+. .+.||+||++..|++|+.+++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~y~~~~~ 79 (208)
T 1o0e_A 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK-KNHGCLGGAFVFAYQYIINNG 79 (208)
T ss_dssp CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHHT
T ss_pred CCCcCcCCCCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcC-CCCCCCCCCHHHHHHHHHHhC
Confidence 7999999999999999999999999999999999999999999999999999999986 478999999999999999877
Q ss_pred CcCCCCCccCCCCCCCcccCCccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCCCeE
Q 041011 182 GIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHA 261 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Ha 261 (313)
|+++|++|||....+.|.. ....+++.+|..++..++++|+++|++|||+++|++...+|+.|++|||+.+|+..++||
T Consensus 80 Gi~~e~~yPY~~~~~~C~~-~~~~~~i~~~~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~~~~Ha 158 (208)
T 1o0e_A 80 GIDTQANYPYKAVQGPCQA-ASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHG 158 (208)
T ss_dssp CBCBTTTSCCCSSCCCCCC-CCCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCSCCCEE
T ss_pred CcCcccccCccCCCCcCCC-CCceEEeCeEEEeCCCCHHHHHHHHHhCCEEEEEEccCcccccccCceECCCCCCcCCEE
Confidence 9999999999999999986 445678999999987789999999999999999999745899999999998898888999
Q ss_pred EEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC--CccccccceeeeeC
Q 041011 262 VTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE--GLCGIGTQAAYPIT 313 (313)
Q Consensus 262 v~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~--~~Cgi~~~~~~p~~ 313 (313)
|+|||||+ +|||||||||++|||+|||||+|+. |.|||+++++||++
T Consensus 159 V~iVGyg~-----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~~~p~~ 207 (208)
T 1o0e_A 159 VTIVGYQA-----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPTK 207 (208)
T ss_dssp EEEEEECS-----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEEC
T ss_pred EEEEEeCC-----CeEEEEcCCCCcccCCcEEEEEcCCCCCcCCCcccceeeec
Confidence 99999997 7999999999999999999999996 99999999999985
No 22
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}
Probab=100.00 E-value=2.2e-67 Score=469.79 Aligned_cols=214 Identities=49% Similarity=1.038 Sum_probs=197.4
Q ss_pred CCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHH
Q 041011 100 TQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIK 179 (313)
Q Consensus 100 ~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~ 179 (313)
++||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+...+.||+||++..|++|+.+
T Consensus 2 ~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~~yi~~ 81 (262)
T 2fo5_A 2 SDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKN 81 (262)
T ss_dssp -CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCGGGCBCHHHHHHHHHH
T ss_pred CCCCCcccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcCCCCCCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998644789999999999999998
Q ss_pred hCCcCCCCCccCCCCCCCcccC----Ccc-ceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCC
Q 041011 180 NQGIATEADYPYHQVQGSCGRE----HAA-AAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVC 254 (313)
Q Consensus 180 ~~Gi~~e~~yPy~~~~~~C~~~----~~~-~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~ 254 (313)
++|+++|++|||....+.|... ... .+++.+|..++..++++|+++|++|||+++|++..++|+.|++|||..+|
T Consensus 82 ~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~i~~y~~v~~~~e~~ik~al~~GPV~v~i~~~~~~f~~Y~sGVy~~~c 161 (262)
T 2fo5_A 82 NGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGEC 161 (262)
T ss_dssp TTCEEBTTTSCCCSSCCCCCHHHHHHHCCCEECCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCC
T ss_pred cCCcCchhcCCCcCccCccCCcccccCCceeEEeceEEEcCCchHHHHHHHHHhCCEEEEEecChHHHhccCCceECCCC
Confidence 7799999999999999999864 234 67899999998778999999999999999999975689999999999889
Q ss_pred CCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 255 GTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 255 ~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
+..++|||+|||||++.+|++|||||||||++||++|||||+|+. |.|||++.++||++
T Consensus 162 ~~~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~~p~~ 224 (262)
T 2fo5_A 162 GTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK 224 (262)
T ss_dssp CCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSCEEEEC
T ss_pred CCcCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCCCCccceeeeeeEEEe
Confidence 888899999999999756899999999999999999999999985 56999999999985
No 23
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...
Probab=100.00 E-value=6.4e-67 Score=454.57 Aligned_cols=205 Identities=48% Similarity=0.924 Sum_probs=192.1
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||++++++++..++||+|+|+||+. .+.||+||++..|++|+.++
T Consensus 1 lP~~~DwR~~~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~yi~~~- 78 (212)
T 2cio_A 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR-RSYGCNGGYPWSALQLVAQY- 78 (212)
T ss_dssp CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHT-
T ss_pred CCCcccCCCCCCCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCC-CCCCCCCCCHHHHHHHHHHh-
Confidence 7999999999999999999999999999999999999999999999999999999996 47899999999999999988
Q ss_pred CcCCCCCccCCCCCCCcccC--CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCCC
Q 041011 182 GIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLD 259 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~ 259 (313)
|+++|++|||....+.|... ....+++.+|..++..++++|+++|++|||+++|++...+|+.|++|||..+|+..++
T Consensus 79 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~~~~~~ 158 (212)
T 2cio_A 79 GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD 158 (212)
T ss_dssp CBCBTTTSCCCSSCCCCCTTTTCSCSBCCSEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCSCCC
T ss_pred CcCcccccCCcCCCCCcCCCCCCCceEEEeeEEEeCCccHHHHHHHHHhCCEEEEEeccCcchhhcCCceecCCCCCCCC
Confidence 89999999999998999876 2457889999999877899999999999999999997458999999999988988889
Q ss_pred eEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 260 HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 260 Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
|||+|||||+ +|||||||||++|||+|||||+|+. |+|||+++++||++
T Consensus 159 HaV~iVGyg~-----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~ 211 (212)
T 2cio_A 159 HAVAAVGYGP-----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211 (212)
T ss_dssp EEEEEEEEET-----TEEEEECSBCTTSTBTTEEEEECSSSCTTCGGGTTSCCEEEEC
T ss_pred EEEEEEEecC-----CeEEEEeCCCCCcccCcEEEEEcCCCCCCCccCcccceeEEEe
Confidence 9999999997 7999999999999999999999995 89999999999985
No 24
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...
Probab=100.00 E-value=5.9e-67 Score=457.53 Aligned_cols=211 Identities=45% Similarity=0.926 Sum_probs=193.6
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC-CCCCCCCCChHHHHHHHHHh
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN-GNSGCVAGKSDIAFKYIIKN 180 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~-~~~gc~gG~~~~a~~~~~~~ 180 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+.. ++.||+||++..|++|+.++
T Consensus 1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y~~~~ 80 (220)
T 2xu3_A 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN 80 (220)
T ss_dssp CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHHHHHH
T ss_pred CCCcEeCCCCCCCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCCCCHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999864 47899999999999999755
Q ss_pred CCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccccccccccCceEeCC-CCC-
Q 041011 181 QGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGV-CGT- 256 (313)
Q Consensus 181 ~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~-~~~- 256 (313)
.|+++|++|||....+.|... .....++.+|..++. ++++||++|+ +|||+++|++..++|+.|++|||..+ |+.
T Consensus 81 ~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~-~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c~~~ 159 (220)
T 2xu3_A 81 GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE 159 (220)
T ss_dssp TCEEBTTTSCCCSSCCCCCCCGGGEEECCSEEEECCS-CHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCSS
T ss_pred CCcccccccCCcccCcCccCCCCCcceeeeeEEEeCC-CHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCCCCCCC
Confidence 599999999999999999876 445678999999985 8999999999 59999999997558999999999987 875
Q ss_pred CCCeEEEEEEecc---cCCCceEEEEEcCCCCCCCCCceEEEEcCC-CccccccceeeeeC
Q 041011 257 QLDHAVTIIGFGT---TEDGTKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGTQAAYPIT 313 (313)
Q Consensus 257 ~~~Hav~iVGyg~---~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~~~~~p~~ 313 (313)
.++|||+|||||+ +++|++|||||||||++||++|||||+|+. |+|||+++++||++
T Consensus 160 ~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~~p~~ 220 (220)
T 2xu3_A 160 DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220 (220)
T ss_dssp CCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred CCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCcccCcEEEEecCCCCcCCccccceeeeC
Confidence 7899999999994 337899999999999999999999999996 89999999999986
No 25
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0
Probab=100.00 E-value=2.8e-67 Score=460.05 Aligned_cols=210 Identities=46% Similarity=0.965 Sum_probs=190.8
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+.. +.||+||++..|++|+.+++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~~~~~~~ 79 (222)
T 3u8e_A 1 APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTX-XXXXXGGDADDAFRWVITNG 79 (222)
T ss_dssp CCSCEEGGGGTCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC-------CCCHHHHHHHHHHHT
T ss_pred CCCcCcCCcCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccCc-ccccCCCCHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999999999999984 88999999999999999888
Q ss_pred CcCCCCCccCCCCCCCcccCCccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccC-ceEeC-CCCC---
Q 041011 182 GIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKG-GIFNG-VCGT--- 256 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~-Giy~~-~~~~--- 256 (313)
|+++|++|||.+..+.|.......+++.+|..++ .++++|+++|.+|||+++|++...+|+.|++ |||.. +|+.
T Consensus 80 Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~~~~v~-~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~~~~~ 158 (222)
T 3u8e_A 80 GIASDANYPYTGVDGTCDLNKPIAARIDGYTNVP-NSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPA 158 (222)
T ss_dssp CBCBTTTSCCCSSCCCCCCCSCCCBCCCEEEECC-SCHHHHHHHHHHSCEEEEECCCSHHHHTCCCSSCBCCTTCCCCGG
T ss_pred CccchhcCCCcccCCccccCCCCeEEEccEEEeC-CcHHHHHHHHhCCCEEEEEEecChhhhcEeCCceECCCcccCCCC
Confidence 9999999999999999987744478899999998 7899999999889999999998458999999 99998 4876
Q ss_pred CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCC----ccccccceeeeeC
Q 041011 257 QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEG----LCGIGTQAAYPIT 313 (313)
Q Consensus 257 ~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~----~Cgi~~~~~~p~~ 313 (313)
.++|||+|||||++.++++|||||||||++||++|||||+|+.| +|||+++++||++
T Consensus 159 ~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~~p~~ 219 (222)
T 3u8e_A 159 TVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTK 219 (222)
T ss_dssp GCCEEEEEEEEEESSTTCEEEEEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSCEEEEC
T ss_pred cCCEEEEEEEEeecCCCCcEEEEECCCCCCcccCCEEEEEcCCCCCCCcCCccccceEEEE
Confidence 68999999999987338999999999999999999999999976 9999999999985
No 26
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1
Probab=100.00 E-value=8.1e-67 Score=454.37 Aligned_cols=205 Identities=49% Similarity=1.002 Sum_probs=192.3
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+. .+.||+||++..|++|+.++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~~~~~~- 78 (213)
T 3ioq_A 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCER-RSYGCRGGFPLYALQYVANS- 78 (213)
T ss_dssp CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHH-
T ss_pred CCCCCCcccCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcC-CCCCCCCCCHHHHHHHHHHc-
Confidence 7999999999999999999999999999999999999999999999999999999998 58899999999999999999
Q ss_pred CcCCCCCccCCCCCCCcccC--CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCCC
Q 041011 182 GIATEADYPYHQVQGSCGRE--HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLD 259 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~ 259 (313)
|+++|++|||.+..+.|... ....+++.+|..++..+++.++++|.+|||+++|++..++|+.|++|||..+|+..++
T Consensus 79 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~~ 158 (213)
T 3ioq_A 79 GIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSID 158 (213)
T ss_dssp CEEBGGGSCCCSSCCCCCGGGCCSCEECCCEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCCSCCC
T ss_pred CCCchhccCcCCCCCCCCCCccCCceEEeccEEEeCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEcCCCCCccC
Confidence 99999999999999999864 4567889999999877788888888899999999997578999999999998888899
Q ss_pred eEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 260 HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 260 Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
|||+|||||+ +|||||||||++|||+|||||+|+. |+|||+++++||++
T Consensus 159 HaV~iVGyg~-----~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~ 211 (213)
T 3ioq_A 159 HAVAAVGYGN-----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK 211 (213)
T ss_dssp EEEEEEEEET-----TEEEEECSBCTTSTBTTEEEEESSCSSTTCGGGTTSCCEEEEC
T ss_pred ceEEEEecCC-----CeEEEECCCCCCcccCCeEEEEcCCCCCCCcccccCcceEeEe
Confidence 9999999985 7999999999999999999999996 89999999999985
No 27
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0
Probab=100.00 E-value=3.1e-67 Score=460.69 Aligned_cols=213 Identities=39% Similarity=0.874 Sum_probs=198.1
Q ss_pred CCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC-CCCCCCCCChHHHHHHHHH
Q 041011 101 QVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN-GNSGCVAGKSDIAFKYIIK 179 (313)
Q Consensus 101 ~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~-~~~gc~gG~~~~a~~~~~~ 179 (313)
+||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|++|+.. ++.||+||.+..|++|+.+
T Consensus 6 ~lP~~~Dwr~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~~~~~~ 85 (224)
T 3f75_A 6 ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLD 85 (224)
T ss_dssp GSCSCEEHHHHTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHHH
T ss_pred CCCCceecccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCCHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999874 3789999999999999998
Q ss_pred hCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCC
Q 041011 180 NQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQL 258 (313)
Q Consensus 180 ~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~ 258 (313)
+.|+++|++|||....+.|... .....++.+|..++..++++|+++|.+|||+++|++..++|+.|++|||++.|+..+
T Consensus 86 ~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~gPV~v~i~~~~~~f~~y~~Giy~~~~~~~~ 165 (224)
T 3f75_A 86 SGGICSEDAYPYLARDEECRAQSCEKVVKILGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDL 165 (224)
T ss_dssp HTCBCBTTTSCCCSSCCCCCGGGSCCCBCCSEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHTEEEEEECCCCCCCC
T ss_pred hCCccccccCCCcCCCCCCCcCCCCceEEeccEEEeCCChHHHHHHHHcCCCEEEEEeccchhhhcCccceECCCCCCcc
Confidence 5599999999999999999876 445677899999987789999999999999999999855899999999996698889
Q ss_pred CeEEEEEEecccC-CCceEEEEEcCCCCCCCCCceEEEEcCC---CccccccceeeeeC
Q 041011 259 DHAVTIIGFGTTE-DGTKYWLIKNSWGDTWGEAGYMRIQRDE---GLCGIGTQAAYPIT 313 (313)
Q Consensus 259 ~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~---~~Cgi~~~~~~p~~ 313 (313)
+|||+|||||++. ++++|||||||||++||++|||||+|+. |.|||+++++||+|
T Consensus 166 ~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p~~ 224 (224)
T 3f75_A 166 DHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224 (224)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEECSBCTTSTBTTEEEEESCSCTTCGGGTTSSCEEEEC
T ss_pred CeEEEEEEEecccCCCCCEEEEECCcCcchhhCCEEEEEcCCCCCCcCcccCceeeeeC
Confidence 9999999999874 6889999999999999999999999997 99999999999986
No 28
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}
Probab=100.00 E-value=1.6e-66 Score=452.64 Aligned_cols=205 Identities=49% Similarity=1.009 Sum_probs=192.6
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+. .+.||+||++..|++|+.++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~y~~~~- 78 (214)
T 2bdz_A 1 YPESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCER-RSHGCDGGYQTTSLQYVVDN- 78 (214)
T ss_dssp CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCT-TSCTTBCCCHHHHHHHHHHH-
T ss_pred CCCcEeCCCCCCCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcC-CCCCCCCCCHHHHHHHHHHh-
Confidence 7999999999999999999999999999999999999999999999999999999996 47899999999999999999
Q ss_pred CcCCCCCccCCCCCCCcccC-C-ccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCCCC
Q 041011 182 GIATEADYPYHQVQGSCGRE-H-AAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLD 259 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~-~-~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~ 259 (313)
|+++|++|||....+.|... . ...+++.+|..++..++++|+++|++|||+++|++..++|+.|++|||..+|+..++
T Consensus 79 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~gPV~v~i~~~~~~f~~Y~~Giy~~~~~~~~~ 158 (214)
T 2bdz_A 79 GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTD 158 (214)
T ss_dssp CEEBTTTSCCCSSCCCCCTTTCCSCEECCCEEEEECSSBHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCSCCSCCC
T ss_pred CCCccccCCCCCCCCCCCCCCCCCceeeecCEEEeCCCcHHHHHHHHHhCCEEEEEeeChhHhhcccCceecCCCCCCCC
Confidence 99999999999998999876 2 457889999999877899999999999999999997568999999999998988899
Q ss_pred eEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 260 HAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 260 Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
|||+|||||+ +|||||||||++|||+|||||+|+. |+|||+++++||++
T Consensus 159 HaV~iVGyg~-----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~ 211 (214)
T 2bdz_A 159 HAVTAVGYGK-----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211 (214)
T ss_dssp EEEEEEEECS-----SEEEEECSBCTTSTBTTEEEEECCCSBSSCGGGTTSCEEEEEC
T ss_pred eEEEEEEcCC-----CeEEEEeCCCCCcccCCEEEEEcCCCCCCCcccccccceEEEe
Confidence 9999999997 7999999999999999999999985 89999999999985
No 29
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Probab=100.00 E-value=4.7e-67 Score=458.29 Aligned_cols=210 Identities=42% Similarity=0.890 Sum_probs=195.3
Q ss_pred CCCeeecCCCC-CcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC-CCCCCCCCChHHHHHHHHH
Q 041011 102 VPTSMDWREKG-AVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN-GNSGCVAGKSDIAFKYIIK 179 (313)
Q Consensus 102 lP~~~Dwr~~g-~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~-~~~gc~gG~~~~a~~~~~~ 179 (313)
||++||||++| +|+||||||.||||||||++++||+++++++++.++||+|+|+||+.. .+.||+||++..|++|+.+
T Consensus 1 lP~~~DwR~~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~ 80 (220)
T 8pch_A 1 YPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRY 80 (220)
T ss_dssp CCSCEEHHHHSSCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHHHHHH
T ss_pred CCCCEecCcCCCcCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCCCCHHHHHHHHHH
Confidence 79999999999 899999999999999999999999999999999999999999999863 4789999999999999998
Q ss_pred hCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccccccccccCceEeCC-CCC
Q 041011 180 NQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGV-CGT 256 (313)
Q Consensus 180 ~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~-~~~ 256 (313)
+.|+++|++|||....+.|... .....++.+|..++..++++|+++|+ +|||+++|++. ++|+.|++|||..+ |..
T Consensus 81 ~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~Y~~Giy~~~~~~~ 159 (220)
T 8pch_A 81 NKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVT-NDFLMYRKGIYSSTSCHK 159 (220)
T ss_dssp HTCEEBTTTSCCCSSCCCCCCCGGGEEECEEEEEECCTTCHHHHHHHHHHTCCEEEEECCC-HHHHTCCSSEECCSSCCC
T ss_pred cCCcCcccccCccCCCCCCCCCCCcceEEeCCEEEeCCCCHHHHHHHHHhcCCEEEEEEec-cchhhcCCCcccCCcCCC
Confidence 8799999999999999999876 45567889999998788999999998 69999999998 69999999999886 754
Q ss_pred ---CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCCccccccceeeeeC
Q 041011 257 ---QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313 (313)
Q Consensus 257 ---~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~~ 313 (313)
.++|||+|||||++ +|++|||||||||++|||+|||||+|+.|+|||+++++||+.
T Consensus 160 ~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~~~p 218 (220)
T 8pch_A 160 TPDKVNHAVLAVGYGEE-NGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIP 218 (220)
T ss_dssp STTTCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEEE
T ss_pred CCCcCCcEEEEEEEEcc-CCeeEEEEECCCCcCcccCCEEEEEcCCCccccCCCceeEee
Confidence 58999999999987 789999999999999999999999999999999999999973
No 30
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...
Probab=100.00 E-value=2.1e-66 Score=452.42 Aligned_cols=207 Identities=36% Similarity=0.785 Sum_probs=187.6
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHh-
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKN- 180 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~- 180 (313)
||++||||++|+|+||||||.||||||||++++||++++++++..++||+|+|+||+. .+.||+||++..|++|++++
T Consensus 1 lP~~~Dwr~~g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~y~~~~~ 79 (215)
T 3i06_A 1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDK-TDSGCSGGLMNNAFEWIVQEN 79 (215)
T ss_dssp CCSEEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCS-SSCGGGCCCHHHHHHHHHHHS
T ss_pred CCCcccCCcCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCC-CCCCCCCCCHHHHHHHHHHhc
Confidence 7999999999999999999999999999999999999999999999999999999987 47899999999999999985
Q ss_pred -CCcCCCCCccCCCCCC---CcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccccccccccCceEeCCC
Q 041011 181 -QGIATEADYPYHQVQG---SCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGVC 254 (313)
Q Consensus 181 -~Gi~~e~~yPy~~~~~---~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~~ 254 (313)
+|+++|++|||....+ .|... .....++.+|..++ .++++|+++|+ +|||+++|++. +|+.|++|||....
T Consensus 80 ~gGi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~v~-~~~~~ik~~l~~~gPV~v~~~~~--~f~~Y~~Giy~~~~ 156 (215)
T 3i06_A 80 NGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP-QDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCV 156 (215)
T ss_dssp TTEEEC-CCSCCCCTTSCCCCCCCSSCCEEEEEEEEEECC-SCHHHHHHHHHHHCCEEEEECCT--TGGGCCSSEECSCC
T ss_pred cccccccCccCCcCCCCCCCccccCCcccceEecceEEeC-ChHHHHHHHHHHCCCEEEEEEch--HHhcCCCCcccCCC
Confidence 4799999999997543 68766 44567889999997 48899999998 69999999983 89999999998633
Q ss_pred CCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCCccccccceeeeeC
Q 041011 255 GTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313 (313)
Q Consensus 255 ~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~~ 313 (313)
...++|||+|||||++ ++++|||||||||++||++|||||+|+.|+|||+++++||++
T Consensus 157 ~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgi~~~~~~~~~ 214 (215)
T 3i06_A 157 SEQLDHGVLLVGYNDS-AAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214 (215)
T ss_dssp CSCCCEEEEEEEEESS-SSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEE
T ss_pred CCccCcEEEEEEEecc-CCcEEEEEECCCCCCcccCceEEEecCCCeecCCCceeEEec
Confidence 4567999999999987 789999999999999999999999999999999999999985
No 31
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Probab=100.00 E-value=1.9e-66 Score=452.39 Aligned_cols=207 Identities=39% Similarity=0.752 Sum_probs=190.8
Q ss_pred CCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhC
Q 041011 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 102 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~ 181 (313)
||++||||++|+|+||||||.||||||||++++||++++++++..++||+|+|+||+. .+.||+||++..|++|+.+++
T Consensus 1 lP~~~DwR~~~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~~i~~~~ 79 (214)
T 1m6d_A 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDK-MDKACMGGLPSNAYSAIKNLG 79 (214)
T ss_dssp CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCS-SSCTTBCCCHHHHHHHHHHHT
T ss_pred CCCcCcCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcC-CCCCCCCCCHHHHHHHHHHhc
Confidence 7999999999999999999999999999999999999999999999999999999987 378999999999999999877
Q ss_pred CcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccccccccccCceEeCC---CCC
Q 041011 182 GIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGV---CGT 256 (313)
Q Consensus 182 Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~---~~~ 256 (313)
|+++|++|||.+....|... .....++.++..++ .++++|+++|+ +|||+|+|++. .|++|++|||..+ |+.
T Consensus 80 Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~i~-~~~~~ik~~l~~~GPV~v~i~~~--~f~~Y~~Giy~~~~~~c~~ 156 (214)
T 1m6d_A 80 GLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELS-QNEQKLAAWLAKRGPISVAINAF--GMQFYRHGISRPLRPLCSP 156 (214)
T ss_dssp CBCBTTTSCCCSSCCCCCCCGGGCCBCCSEEEECC-SCHHHHHHHHHHHCCEEEEECTH--HHHHCCSSEECCCGGGSCT
T ss_pred CcccccCcCcCCCCCcCCCCcccceEEecCEEEeC-hHHHHHHHHHHhCCCEEEEEEec--hhhhcCCceecCCCCcCCC
Confidence 99999999999998999876 34456788888887 48899999998 69999999987 5999999999863 765
Q ss_pred -CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCCccccccceeeeeC
Q 041011 257 -QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313 (313)
Q Consensus 257 -~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~~ 313 (313)
.++|||+|||||++ +|++|||||||||++|||+|||||+|+.|+|||+++++||++
T Consensus 157 ~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~Cgi~~~~~~~~~ 213 (214)
T 1m6d_A 157 WLIDHAVLLVGYGQR-SDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 213 (214)
T ss_dssp TCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEEC
T ss_pred CcCCEEEEEEEEeec-CCcEEEEEEeCCCCCcccCcEEEEEcCCCccccCceeEEEEe
Confidence 57999999999997 789999999999999999999999999999999999999985
No 32
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Probab=100.00 E-value=2.7e-66 Score=459.91 Aligned_cols=209 Identities=43% Similarity=0.908 Sum_probs=194.0
Q ss_pred CCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHh
Q 041011 101 QVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKN 180 (313)
Q Consensus 101 ~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~ 180 (313)
+||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+. .+.||+||++..|++|+.++
T Consensus 1 ~lP~~~DwR~~g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~-~~~gC~GG~~~~a~~y~~~~ 79 (246)
T 2b1m_A 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVD-ESEGCYNGWHYQSFEWVVKH 79 (246)
T ss_dssp -CCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT-TSBTTTBCCHHHHHHHHHHT
T ss_pred CCCCcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcC-CCCCCCCCCHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999986 57899999999999999987
Q ss_pred CCcCCCCCccCCCCCCCcccC-Cccceeecce---EEcCCchHHHHHHHHhc----CCeEEEEEccccccccccCceEeC
Q 041011 181 QGIATEADYPYHQVQGSCGRE-HAAAAKISSY---EVLPSGDEQALLKAVSM----QPVSINIEGTGQDFKNYKGGIFNG 252 (313)
Q Consensus 181 ~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~---~~v~~~~~~~i~~~l~~----gPV~v~~~~~~~~f~~y~~Giy~~ 252 (313)
+|+++|++|||....+.|... ....+++.+| ..++..++++|+++|++ |||+++|++ ++|+.|++|||..
T Consensus 80 ~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~--~~f~~Y~~Giy~~ 157 (246)
T 2b1m_A 80 GGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDG 157 (246)
T ss_dssp TCBCBTTTSCCCSSCCCCCGGGCCCCBCCSEEEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECC--TTGGGCCSSEECC
T ss_pred CCcCccccccccCCCCcCcCCCCCCceeEcCcceeeecCCChHHHHHHHHHhhccCCCEEEEEEc--chhhcccceeecC
Confidence 799999999999999999876 4456788999 88877789999999987 999999998 5899999999998
Q ss_pred C-CCCC--CCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC----CccccccceeeeeC
Q 041011 253 V-CGTQ--LDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE----GLCGIGTQAAYPIT 313 (313)
Q Consensus 253 ~-~~~~--~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~Cgi~~~~~~p~~ 313 (313)
+ |+.. ++|||+|||||++ +|++|||||||||++||++|||||+|+. |+|||++.++||++
T Consensus 158 ~~c~~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~~ 224 (246)
T 2b1m_A 158 GNCSSPYGINHFVLIVGYGSE-DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII 224 (246)
T ss_dssp TTCCSSCCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEEEC
T ss_pred CCCCCCCcCceEEEEEEEecc-CCceEEEEEeCCCCcccCCcEEEEEcCCCCCCccccccceeeEEEe
Confidence 4 8865 8999999999998 8999999999999999999999999997 99999999999985
No 33
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A
Probab=100.00 E-value=2.6e-66 Score=459.10 Aligned_cols=210 Identities=41% Similarity=0.809 Sum_probs=194.5
Q ss_pred CCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHH
Q 041011 100 TQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIK 179 (313)
Q Consensus 100 ~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~ 179 (313)
.+||++||||++|+|+||||||.||||||||++++||++++++++..++||+|+|+||+.. +.||+||++..|++|+.+
T Consensus 16 ~~lP~~~DwR~~~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~~-~~gC~GG~~~~a~~yi~~ 94 (241)
T 2oul_A 16 NFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NYGCNGGLINNAFEDMIE 94 (241)
T ss_dssp CCCSSCEEGGGTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCTT-SCTTBCBCHHHHHHHHHH
T ss_pred ccCCCccccCcCCCCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcCC-CCCCCCCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999973 789999999999999998
Q ss_pred hCCcCCCCCccCCCCCCC-cccC-CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCCC
Q 041011 180 NQGIATEADYPYHQVQGS-CGRE-HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQ 257 (313)
Q Consensus 180 ~~Gi~~e~~yPy~~~~~~-C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~ 257 (313)
+.|+++|++|||....+. |... ....+++.+|..++..++++|+++| |||+++|++. ++|+.|++|||...|+..
T Consensus 95 ~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l--GPV~v~i~~~-~~f~~Y~~Giy~~~c~~~ 171 (241)
T 2oul_A 95 LGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRFL--GPISISVAVS-DDFAFYKEGIFDGECGDQ 171 (241)
T ss_dssp TTSBCBTTSSCCCTTSCCCCCTTSSSCCBCCSEEEECCTTCHHHHHHHT--CCEEEEECBC-HHHHTCCSSBCCSCBCSS
T ss_pred hCCcCccccCCCcCCCCCcCCCCCCccceeeeeEEEeCCCCHHHHHHhh--CCEEEEEecC-cchhhcCCcEEcCcCCCC
Confidence 569999999999998888 9876 4567889999999877899999999 9999999997 799999999999888766
Q ss_pred CCeEEEEEEecccC---------CCceEEEEEcCCCCCCCCCceEEEEcCCCc----cccccceeeeeC
Q 041011 258 LDHAVTIIGFGTTE---------DGTKYWLIKNSWGDTWGEAGYMRIQRDEGL----CGIGTQAAYPIT 313 (313)
Q Consensus 258 ~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~----Cgi~~~~~~p~~ 313 (313)
++|||+|||||++. .|++|||||||||++||++|||||+|+.|. |||+++++||++
T Consensus 172 ~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~ 240 (241)
T 2oul_A 172 LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 240 (241)
T ss_dssp CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEEC
T ss_pred CCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEee
Confidence 99999999999873 278999999999999999999999999766 999999999985
No 34
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*
Probab=100.00 E-value=3e-66 Score=459.25 Aligned_cols=211 Identities=38% Similarity=0.777 Sum_probs=195.0
Q ss_pred CCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHH
Q 041011 99 LTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYII 178 (313)
Q Consensus 99 ~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~ 178 (313)
..+||++||||++|+|+||||||.||||||||++++||++++++++..++||+|+|+||+.. +.||+||++..|++|+.
T Consensus 17 ~~~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~~-~~gC~GG~~~~a~~y~~ 95 (243)
T 3bwk_A 17 AKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK-NNGCYGGYITNAFDDMI 95 (243)
T ss_dssp CCCCCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCTT-SCGGGCCCHHHHHHHHH
T ss_pred cccCCCceecCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCC-CCCCCCCCHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999973 78999999999999999
Q ss_pred HhCCcCCCCCccCCCCCCC-cccC-CccceeecceEEcCCchHHHHHHHHhcCCeEEEEEccccccccccCceEeCCCCC
Q 041011 179 KNQGIATEADYPYHQVQGS-CGRE-HAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGT 256 (313)
Q Consensus 179 ~~~Gi~~e~~yPy~~~~~~-C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~ 256 (313)
++.|+++|++|||....+. |... ....+++.+|..++..++++|+++| |||+++|++. ++|+.|++|||...|+.
T Consensus 96 ~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l--GPV~v~i~~~-~~f~~Y~~Giy~~~c~~ 172 (243)
T 3bwk_A 96 DLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEALRYL--GPISISIAAS-DDFAFYRGGFYDGECGA 172 (243)
T ss_dssp HTTSBCBTTTSCCCTTSCCCCCGGGCSSCBCCCEEEECCTTCHHHHHHHT--CCEEEEECCC-HHHHTCCSSSCCCCCCS
T ss_pred HhCCcccccccCCcCCCCCcCCCCCCccceeeeeEEEeCCCCHHHHHHhh--CCEEEEEecC-hhHHhcCCceecCCCCC
Confidence 8569999999999998888 9875 4567889999999877899999999 9999999997 79999999999988876
Q ss_pred CCCeEEEEEEecccC---------CCceEEEEEcCCCCCCCCCceEEEEcCCCc----cccccceeeeeC
Q 041011 257 QLDHAVTIIGFGTTE---------DGTKYWLIKNSWGDTWGEAGYMRIQRDEGL----CGIGTQAAYPIT 313 (313)
Q Consensus 257 ~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~----Cgi~~~~~~p~~ 313 (313)
.++|||+|||||++. .|++|||||||||++||++|||||+|+.|. |||+++++||++
T Consensus 173 ~~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~ 242 (243)
T 3bwk_A 173 APNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL 242 (243)
T ss_dssp SCCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEEC
T ss_pred cCCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEec
Confidence 699999999999873 278999999999999999999999999766 999999999986
No 35
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Probab=100.00 E-value=1.6e-66 Score=455.48 Aligned_cols=210 Identities=30% Similarity=0.550 Sum_probs=194.5
Q ss_pred CCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHH
Q 041011 100 TQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIK 179 (313)
Q Consensus 100 ~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~ 179 (313)
.+||++||||++|+|+||||||.||||||||++++||+++++++++.++||+|+|+||+. +.||+||++..|++|+++
T Consensus 8 ~~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~lE~~~~~~~~~~~~lS~q~l~dc~~--~~gC~GG~~~~a~~~~~~ 85 (222)
T 3f5v_A 8 GNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS--QHGCHGDTIPRGIEYIQH 85 (222)
T ss_dssp CCCCSCEEHHHHTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC--SSTTBCCCHHHHHHHHHH
T ss_pred cCCCCCCCCccCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhCcC--CCCCCCCCHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred hCCcCCCCCccCCCCCCCcccCCccceeecceEEcCCchHHHHHHHHhc--CCeEEEEEcc-ccccccccCceEeCC-C-
Q 041011 180 NQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSM--QPVSINIEGT-GQDFKNYKGGIFNGV-C- 254 (313)
Q Consensus 180 ~~Gi~~e~~yPy~~~~~~C~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~--gPV~v~~~~~-~~~f~~y~~Giy~~~-~- 254 (313)
+ |+++|++|||.+..+.|.......+++.+|..++..++++|+++|++ |||+++|.+. .++|+.|++|||... |
T Consensus 86 ~-Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~~~~~~ 164 (222)
T 3f5v_A 86 N-GVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNG 164 (222)
T ss_dssp H-CEEBGGGSCCCSSCCCCCCCSSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCS
T ss_pred c-CCCchhhCCCcccCCCccCCcCcceeeccEEEeCCCCHHHHHHHHHhcCCCEEEEEEeccchhhhccCCCceecCCCC
Confidence 8 99999999999999999855667789999999977899999999985 8999999984 268999999987654 4
Q ss_pred CCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCCccccccceeeeeC
Q 041011 255 GTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT 313 (313)
Q Consensus 255 ~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~~ 313 (313)
...++|||+|||||++ +|++|||||||||++||++|||||+|+.|.|||+++++||+|
T Consensus 165 ~~~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~p~~ 222 (222)
T 3f5v_A 165 YQPNYHAVNIVGYSNA-QGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 222 (222)
T ss_dssp SSCEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEEC
T ss_pred CCccCcEEEEEEEecc-CCCEEEEEEcCCCCCcccCCEEEEEcCCCeecCCCceeEEeC
Confidence 4568999999999987 789999999999999999999999999999999999999986
No 36
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Probab=100.00 E-value=1.5e-61 Score=436.46 Aligned_cols=208 Identities=28% Similarity=0.615 Sum_probs=185.7
Q ss_pred CCCCCCCeeecCCC---CCcCcccCCC---CCccHHHHHHHHHHhHhHHhhcC-C--ccccCHHHHhhhcCCCCCCCCCC
Q 041011 98 NLTQVPTSMDWREK---GAVTSIKNQG---GCAACWAFSAVAAVEGITQISSG-N--LIRLSEQQLLDCSSNGNSGCVAG 168 (313)
Q Consensus 98 ~~~~lP~~~Dwr~~---g~v~pV~dQg---~cGsCwAfA~~~~le~~~~~~~~-~--~~~LS~q~l~dc~~~~~~gc~gG 168 (313)
+..+||++||||++ ++|+|||||| .||||||||++++||++++++++ . .++||+|+|+||+. ..||+||
T Consensus 32 ~~~~lP~~~DwR~~~~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~--~~gC~GG 109 (277)
T 1deu_A 32 SPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGN--AGSCEGG 109 (277)
T ss_dssp CGGGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSS--SEETBEE
T ss_pred ccccCCCceecccCCCCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcC--CCCCCCC
Confidence 34579999999998 6799999999 99999999999999999999875 3 47999999999986 4799999
Q ss_pred ChHHHHHHHHHhCCcCCCCCccCCCCCCCccc-C---------------CccceeecceEEcCCchHHHHHHHHh-cCCe
Q 041011 169 KSDIAFKYIIKNQGIATEADYPYHQVQGSCGR-E---------------HAAAAKISSYEVLPSGDEQALLKAVS-MQPV 231 (313)
Q Consensus 169 ~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~-~---------------~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV 231 (313)
++..|++|+.++ ||++|++|||......|.. . ....+++..|..++ ++++|+++|. +|||
T Consensus 110 ~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~c~~~~~~~~~~i~~y~~v~--~~~~i~~~i~~~GPV 186 (277)
T 1deu_A 110 NDLSVWDYAHQH-GIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS--GREKMMAEIYANGPI 186 (277)
T ss_dssp CHHHHHHHHHHT-CBCBGGGSCCCSSCCCCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEEC--SHHHHHHHHHHHCCE
T ss_pred CHHHHHHHHHHc-CCCcCccCCCcCCCCCccccccccccccCcccccccCcceEEeceeEecC--CHHHHHHHHHHcCCE
Confidence 999999999987 9999999999998888873 1 11346777888776 5788999987 6999
Q ss_pred EEEEEccccccccccCceEeCC-CCCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCC--------cc
Q 041011 232 SINIEGTGQDFKNYKGGIFNGV-CGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEG--------LC 302 (313)
Q Consensus 232 ~v~~~~~~~~f~~y~~Giy~~~-~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~--------~C 302 (313)
+++|++. ++|+.|++|||..+ |...++|||+|||||++ +|++|||||||||++|||+|||||+|+.| .|
T Consensus 187 ~v~i~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~iVGyg~~-~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~c 264 (277)
T 1deu_A 187 SCGIMAT-ERLANYTGGIYAEYQDTTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNL 264 (277)
T ss_dssp EEEECCC-HHHHTCCSSEECBCCSCCCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBT
T ss_pred EEEEecc-cccccCcCcEECCCCCCCcCCeEEEEEEeccc-CCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccc
Confidence 9999998 79999999999987 55678999999999998 89999999999999999999999999988 99
Q ss_pred ccccceeeee
Q 041011 303 GIGTQAAYPI 312 (313)
Q Consensus 303 gi~~~~~~p~ 312 (313)
||+++++|++
T Consensus 265 gIe~~~~~~~ 274 (277)
T 1deu_A 265 AIEEHCTFGD 274 (277)
T ss_dssp TTTSCEEEEE
T ss_pred eeccccEeec
Confidence 9999999986
No 37
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Probab=100.00 E-value=1.2e-61 Score=435.35 Aligned_cols=207 Identities=29% Similarity=0.631 Sum_probs=178.4
Q ss_pred CCCCeeecCCC----CCcCcccCCCCCccHHHHHHHHHHhHhHHhhcC--CccccCHHHHhhhcCC-CCCCCCCCChHHH
Q 041011 101 QVPTSMDWREK----GAVTSIKNQGGCAACWAFSAVAAVEGITQISSG--NLIRLSEQQLLDCSSN-GNSGCVAGKSDIA 173 (313)
Q Consensus 101 ~lP~~~Dwr~~----g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~LS~q~l~dc~~~-~~~gc~gG~~~~a 173 (313)
+||++||||++ +.|+||||||.||||||||++++||++++++++ ..++||+|+|+||+.. .+.||+||++..|
T Consensus 6 ~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~~a 85 (266)
T 3cbj_A 6 KLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEA 85 (266)
T ss_dssp CCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHHHH
T ss_pred CCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHHHH
Confidence 69999999886 789999999999999999999999999999875 4789999999999853 3689999999999
Q ss_pred HHHHHHhCCcCC-------CCCccCC---------CCCCCcccC---------C----c------cceeecceEEcCCch
Q 041011 174 FKYIIKNQGIAT-------EADYPYH---------QVQGSCGRE---------H----A------AAAKISSYEVLPSGD 218 (313)
Q Consensus 174 ~~~~~~~~Gi~~-------e~~yPy~---------~~~~~C~~~---------~----~------~~~~i~~~~~v~~~~ 218 (313)
++|+.++ |+++ |++|||. +..+.|... . . ..+.+ .+..++ .+
T Consensus 86 ~~y~~~~-Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~-~~~~v~-~~ 162 (266)
T 3cbj_A 86 WNFWTRK-GLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGY-NSYSVS-NS 162 (266)
T ss_dssp HHHHHHT-CBCBCCSTTCCCSSSCCCSCCCSCCCSCSSCCCCSCCCCCCCCCSCCTTCCSCTGGGCBCBS-CCEECC-SC
T ss_pred HHHHHHh-CcCcCccccccccccCcccccccccccCCCCCCccccCCCccccccCCCCcceeeeeeeeee-eeEEeC-CC
Confidence 9999987 9999 9999998 334556321 0 0 01122 334565 58
Q ss_pred HHHHHHHHh-cCCeEEEEEccccccccccCceEeCCCCC-CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEE
Q 041011 219 EQALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGVCGT-QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQ 296 (313)
Q Consensus 219 ~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~ 296 (313)
+++|+++|+ +|||+|+|++. ++|+.|++|||.++|+. .++|||+|||||++ +|++|||||||||++|||+|||||+
T Consensus 163 ~~~i~~~i~~~GPV~v~i~~~-~~f~~Y~~Gvy~~~~~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~ 240 (266)
T 3cbj_A 163 EKDIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKIL 240 (266)
T ss_dssp HHHHHHHHHHHCCEEEEEEEE-GGGGGCCSSEECCCSSCEEEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEec-cchhhcCCeEEecCCCCccCCeEEEEEEeccc-CCceEEEEEcCCCCccCCCCEEEEE
Confidence 999999998 59999999997 79999999999988665 35999999999997 7899999999999999999999999
Q ss_pred cCCCccccccceeeee
Q 041011 297 RDEGLCGIGTQAAYPI 312 (313)
Q Consensus 297 ~~~~~Cgi~~~~~~p~ 312 (313)
|+.|.|||++.+++++
T Consensus 241 rg~n~cgI~~~~~~~~ 256 (266)
T 3cbj_A 241 RGQDHCGIESEVVAGI 256 (266)
T ss_dssp CSSCGGGTTTSCEECC
T ss_pred cCCCcccccCceEEEE
Confidence 9999999999999875
No 38
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*
Probab=100.00 E-value=2.3e-61 Score=430.86 Aligned_cols=208 Identities=36% Similarity=0.681 Sum_probs=177.2
Q ss_pred CCCCeeecCCC----CCcCcccCCCCCccHHHHHHHHHHhHhHHhhcC--CccccCHHHHhhhcCCCCCCCCCCChHHHH
Q 041011 101 QVPTSMDWREK----GAVTSIKNQGGCAACWAFSAVAAVEGITQISSG--NLIRLSEQQLLDCSSNGNSGCVAGKSDIAF 174 (313)
Q Consensus 101 ~lP~~~Dwr~~----g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~ 174 (313)
+||++||||++ +.|+||||||.||||||||++++||++++++++ ..++||+|+|+||+...+.||+||++..|+
T Consensus 2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~ 81 (254)
T 3qsd_A 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAW 81 (254)
T ss_dssp CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTTSBCTTBCBCHHHHH
T ss_pred CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcCCCCCCCCCCHHHHH
Confidence 58999999998 689999999999999999999999999999976 689999999999986556899999999999
Q ss_pred HHHHHhCCcCCCCCc-------cCC---------CCCCCcccC----------Cccce---------eecceEEcCCchH
Q 041011 175 KYIIKNQGIATEADY-------PYH---------QVQGSCGRE----------HAAAA---------KISSYEVLPSGDE 219 (313)
Q Consensus 175 ~~~~~~~Gi~~e~~y-------Py~---------~~~~~C~~~----------~~~~~---------~i~~~~~v~~~~~ 219 (313)
+|++++ ||++|++| ||. +..+.|... ..... .......++ .++
T Consensus 82 ~yi~~~-Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (254)
T 3qsd_A 82 DYWVKE-GIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVK-NDE 159 (254)
T ss_dssp HHHHHT-CBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECC-SCH
T ss_pred HHHHHc-CCCcccccccCcCcCCcccccccccccCcCCCCcccccCCccccccccCCccceeeeeeeeeeeeEecC-CcH
Confidence 999988 99999888 996 334445321 00000 111122454 589
Q ss_pred HHHHHHHh-cCCeEEEEEccccccccccCceEeCCCCC-CCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEc
Q 041011 220 QALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGVCGT-QLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQR 297 (313)
Q Consensus 220 ~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~ 297 (313)
++|+++|+ +|||+++|++. ++|+.|++|||..++.. .++|||+|||||++ ++++|||||||||++||++|||||+|
T Consensus 160 ~~i~~~l~~~gPv~~~~~~~-~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~~WG~~Gy~~i~r 237 (254)
T 3qsd_A 160 KAIQKEIMKYGPVEAGFTVY-EDFLNYKSGIYKHITGETLGGHAIRIIGWGVE-NKAPYWLIANSWNEDWGENGYFRIVR 237 (254)
T ss_dssp HHHHHHHHHHCCEEEEEEEE-GGGGGCCSSEECCCSSCEEEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEEec-cccccccCCeeccCCCCCCCCeEEEEEEEeec-CCeeEEEEEeCCCCCcccCCeEEEEc
Confidence 99999998 69999999997 79999999999988554 46999999999987 78999999999999999999999999
Q ss_pred CCCccccccceeeee
Q 041011 298 DEGLCGIGTQAAYPI 312 (313)
Q Consensus 298 ~~~~Cgi~~~~~~p~ 312 (313)
+.|+|||+++++..+
T Consensus 238 g~n~CgI~~~~~~~~ 252 (254)
T 3qsd_A 238 GRDECSIESEVTAGR 252 (254)
T ss_dssp SSCGGGTTSSEEEEE
T ss_pred CCCeecCCCceEeec
Confidence 999999999988654
No 39
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Probab=100.00 E-value=1.7e-55 Score=395.50 Aligned_cols=207 Identities=23% Similarity=0.535 Sum_probs=166.1
Q ss_pred CeeecCCC-CCcC--cccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC-CCCCCCCCChH-HHHHHHH
Q 041011 104 TSMDWREK-GAVT--SIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN-GNSGCVAGKSD-IAFKYII 178 (313)
Q Consensus 104 ~~~Dwr~~-g~v~--pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~-~~~gc~gG~~~-~a~~~~~ 178 (313)
.-.|||+. |+++ ||||||.||||||||++++||++++++++.++.||+|+|+||+.. .+.||+||... .++.++.
T Consensus 9 ~~~dWR~~~~~~~it~VkdQg~CGSCWAFaa~~alE~~~~i~~~~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~i~ 88 (265)
T 2wbf_X 9 YCNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIE 88 (265)
T ss_dssp CBCGGGCTTSTGGGSCCCBCTTSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHHHH
T ss_pred HHHhhccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHHHH
Confidence 45799999 6877 999999999999999999999999999999999999999999864 47899999655 5567777
Q ss_pred HhCCcCCCCCccCCCC--CCCcccCC------------------ccceeecceEEcCCc----h----HHHHHHHHh-cC
Q 041011 179 KNQGIATEADYPYHQV--QGSCGREH------------------AAAAKISSYEVLPSG----D----EQALLKAVS-MQ 229 (313)
Q Consensus 179 ~~~Gi~~e~~yPy~~~--~~~C~~~~------------------~~~~~i~~~~~v~~~----~----~~~i~~~l~-~g 229 (313)
+++||++|++|||... .+.|+... ....++.+|..++.. + +++|+++|+ +|
T Consensus 89 ~~Ggi~~e~~yPY~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~~i~~~G 168 (265)
T 2wbf_X 89 DYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKG 168 (265)
T ss_dssp HHCCCCBTTTSCCCGGGTTSCCCCCCTTCCCTTTTCEECCCCCSSSTTCCSSEEEEEGGGGTTCHHHHHHHHHHHHHHHS
T ss_pred HcCCCCCccccCCcCCCCCCCCCCccccccccccccccccccCCCceeecCCceEeeccccccchhhHHHHHHHHHHhcC
Confidence 7745999999999863 46786431 123567788777642 3 478999998 59
Q ss_pred CeEEEEEcccccccccc-CceE-eCCCCC-CCCeEEEEEEeccc--CCC--ceEEEEEcCCCCCCCCCceEEEEc-CCCc
Q 041011 230 PVSINIEGTGQDFKNYK-GGIF-NGVCGT-QLDHAVTIIGFGTT--EDG--TKYWLIKNSWGDTWGEAGYMRIQR-DEGL 301 (313)
Q Consensus 230 PV~v~~~~~~~~f~~y~-~Giy-~~~~~~-~~~Hav~iVGyg~~--~~g--~~ywivkNSWG~~WG~~Gy~~i~~-~~~~ 301 (313)
||+++|++. +|+.|+ +|++ ...|+. .++|||+|||||++ ++| ++|||||||||++|||+|||||+| +.|+
T Consensus 169 PV~v~i~~~--~f~~y~~~g~~~~~~c~~~~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n~ 246 (265)
T 2wbf_X 169 SVIAYIKAE--NVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH 246 (265)
T ss_dssp CEEEEECGG--GGCSGGGGSSSEECCCCCSCCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCTT
T ss_pred CEEEEEEcc--cccccccCCcEEcCCCCCCcCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCCc
Confidence 999999975 577774 4433 334875 68999999999985 355 689999999999999999999997 4799
Q ss_pred ccccc---ceeeee
Q 041011 302 CGIGT---QAAYPI 312 (313)
Q Consensus 302 Cgi~~---~~~~p~ 312 (313)
|||+. .+.||+
T Consensus 247 Cgi~~~~~~~~~~~ 260 (265)
T 2wbf_X 247 CHFNFIHSVVIFNV 260 (265)
T ss_dssp CSSCSCCEEEEECE
T ss_pred cCcceeEEEEeccc
Confidence 99655 555553
No 40
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}
Probab=100.00 E-value=2.2e-53 Score=386.23 Aligned_cols=228 Identities=17% Similarity=0.235 Sum_probs=175.7
Q ss_pred cEEEEcccCCCCCHHHHHHHhcCCCcccccc-CCccccCC--CCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHh
Q 041011 60 TYQLGTNQFSDLTNAEFRASYAGNSMAITSQ-HSSFKYQN--LTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVE 136 (313)
Q Consensus 60 ~~~~g~N~fsd~t~~E~~~~~~~~~~~~~~~-~~~~~~~~--~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le 136 (313)
...-.+|++.++..|.|+.. +|..++.... ...+.... ..+||++||||+++ ||||||.||||||||++++||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~-lG~~p~~~d~rd~~~~~~~~~~~~lP~s~DwR~~~---pVkdQG~CGSCWAFAa~~alE 88 (291)
T 3ois_A 13 GLVPRGSHMQTVLKRRKKSG-YGYIPDIADIRDFSYTPEKSVIAALPPKVDLTPPF---QVYDQGRIGSCTANALAAAIQ 88 (291)
T ss_dssp ----------CCCCCCCCTT-CCEECCCCCTTCCBCCCCHHHHHTCCSEEECCCSS---CCCBCTTSSCHHHHHHHHHHH
T ss_pred CcccchhhHhHhhhcccccc-CCCCCCCCcccccccCCCccccccCCcceecccCC---CcccCCCCccHHHHHHHHHHH
Confidence 34457789999998888754 4555443321 11111111 13799999999984 999999999999999999999
Q ss_pred HhHHhhcCCccccCHHHHh--hhcCC--CC-CCCCCCChHHHHHHHHHhCCcCCCCCccCCCCC---CCcccC-------
Q 041011 137 GITQISSGNLIRLSEQQLL--DCSSN--GN-SGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQ---GSCGRE------- 201 (313)
Q Consensus 137 ~~~~~~~~~~~~LS~q~l~--dc~~~--~~-~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~---~~C~~~------- 201 (313)
++++ +++..+.||+|+|+ +|... ++ .+|.||++..|++|+.++ ||++|++|||.+.. +.|...
T Consensus 89 ~~~~-~~g~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~ 166 (291)
T 3ois_A 89 FERI-HDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKL-GVCPEKEWPYGDTPADPRTEEFPPGAPASK 166 (291)
T ss_dssp HHHH-HTTCSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHT-CCCBGGGSCCCCCCCCTTTCSCCTTCGGGS
T ss_pred HHHH-HhCCCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHh-CCCCHhhCCCCCCccccccccccccccccC
Confidence 9876 46777899999998 67631 23 468899999999999988 99999999999873 345431
Q ss_pred --------CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccccccccccC--ceEeCC-CCC--CCCeEEEEEEe
Q 041011 202 --------HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDFKNYKG--GIFNGV-CGT--QLDHAVTIIGF 267 (313)
Q Consensus 202 --------~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~--Giy~~~-~~~--~~~Hav~iVGy 267 (313)
....+++.+|..|+. ++++|+++|+ .|||+++|.+. ++|+.|++ |||..+ |.. .++|||+||||
T Consensus 167 ~p~~~C~~~~~~~~i~~y~~v~~-~e~~i~~al~~~gPV~v~~~~~-~~f~~y~~~~Gi~~~~~~~~~~~~~Hav~iVGy 244 (291)
T 3ois_A 167 KPSDQCYKDAQNYKITEYSRVAQ-DIDHLKACLAVGSPFVFGFSVY-NSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGY 244 (291)
T ss_dssp CCCHHHHHHHGGGCCCEEEECCS-CHHHHHHHHHTTCCEEEEEEEE-HHHHGGGCCCSBCCCCCTTSCEEEEEEEEEEEE
T ss_pred CCCHHHHhhcccceeccEEEcCc-CHHHHHHHHHcCCCEEEEEEec-cchhhcCCCCeEEeCCCCCCCCcCCeEEEEEEE
Confidence 224578899999984 8999999998 58999999998 79999998 999887 543 25999999999
Q ss_pred cccCCCceEEEEEcCCCCCCCCCceEEEEcC
Q 041011 268 GTTEDGTKYWLIKNSWGDTWGEAGYMRIQRD 298 (313)
Q Consensus 268 g~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~ 298 (313)
|+ +++|||||||||++||++|||||+|+
T Consensus 245 ~~---~~~ywivkNSWG~~WG~~Gy~~i~~~ 272 (291)
T 3ois_A 245 DD---EIRHFRIRNSWGNNVGEDGYFWMPYE 272 (291)
T ss_dssp ET---TTTEEEEECSBCTTSTBTTEEEEEHH
T ss_pred eC---CCCEEEEEeCCCCCCCCCcEEEEEHH
Confidence 83 57899999999999999999999998
No 41
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A
Probab=100.00 E-value=9.6e-43 Score=328.53 Aligned_cols=195 Identities=18% Similarity=0.303 Sum_probs=154.3
Q ss_pred CCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhh-cCCccccCH----------------HHHhhhcCC---
Q 041011 101 QVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQIS-SGNLIRLSE----------------QQLLDCSSN--- 160 (313)
Q Consensus 101 ~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~-~~~~~~LS~----------------q~l~dc~~~--- 160 (313)
..|..|+++....+|||+|||+||+|||||++++||+.++++ +++.+.||+ |+|+||+..
T Consensus 47 ~~~~~F~~~~~~~~tpVknQg~cGsCWaFs~~~~le~~~~~k~~~~~~~lSe~yl~fwDKlEkan~flq~lidc~~~~~~ 126 (453)
T 2cb5_A 47 RAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEP 126 (453)
T ss_dssp HCCCCCSEECSCCCSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCceeeeeccCCCCcccCCCccchHhhhhHHHHHHHHHHHhcCCeEeeChHHHHHHHHHHHhhHHHHHHHHHHhccCC
Confidence 467788888888899999999999999999999999999998 578999999 999999742
Q ss_pred ----------CCCCCCCCChHHHHHHHHHhCCcCCCCCccCCCCC---------------------------C------C
Q 041011 161 ----------GNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQ---------------------------G------S 197 (313)
Q Consensus 161 ----------~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~---------------------------~------~ 197 (313)
.+.+|+||.+..++.++.++ |++++++|||.... + .
T Consensus 127 ~d~R~v~~l~~~~gcdGG~~~~a~~~i~ky-Gl~p~~~yP~~~~s~ns~~mn~~L~~kLr~~a~~LR~~~~~g~~~~~l~ 205 (453)
T 2cb5_A 127 EDGRLVQFLLMNPANDGGQWDMLVNIVEKY-GVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEIS 205 (453)
T ss_dssp TTSHHHHHHHHCTTCSCBCHHHHHHHHHHH-CCCBGGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cchhhHHHhcCCCCCCCCChHHHHHHHHHc-CccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 36899999999999999876 99999999998631 1 1
Q ss_pred ----------------c----------ccC------------Cc-------cce--eecceEEc----------------
Q 041011 198 ----------------C----------GRE------------HA-------AAA--KISSYEVL---------------- 214 (313)
Q Consensus 198 ----------------C----------~~~------------~~-------~~~--~i~~~~~v---------------- 214 (313)
| ... .+ ... .+.+|..+
T Consensus 206 ~~k~~~l~~iy~il~~clG~pP~~F~~~~~dkd~~~~~~~~~TP~~F~~~~~~~~~~~~~yv~l~n~p~~~~py~~~y~v 285 (453)
T 2cb5_A 206 ATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTV 285 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceeeEEEEccCCcccccCCCCHHHHHHHhcCCcCCCCCeEEEecCCCCcCcccceeEE
Confidence 4 110 00 011 34455433
Q ss_pred -----------------CCchH-HHHHHHHhc-CCeEEEEEccccccccccCceEeCC-C--------------------
Q 041011 215 -----------------PSGDE-QALLKAVSM-QPVSINIEGTGQDFKNYKGGIFNGV-C-------------------- 254 (313)
Q Consensus 215 -----------------~~~~~-~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~-~-------------------- 254 (313)
|..+. +.++.+|.. |||++++++.. +.++++|||+.. |
T Consensus 286 ~~~~Nv~~g~~~~y~Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~--~~~~k~GI~~~~~~~~~~~fg~~~~~m~KaeRl~ 363 (453)
T 2cb5_A 286 EYLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGK--HFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLT 363 (453)
T ss_dssp TTCCSSTTCCCCCEEECCHHHHHHHHHHHHHTTCCEEEEECTTT--TEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHH
T ss_pred eecCcccccccccccccCHHHHHHHHHHHHHcCCCEEEEEEeCh--hhccCCcEEcCccccchhhcCccccccCHHHHhh
Confidence 21122 344567775 89999999983 444599999876 4
Q ss_pred --CCCCCeEEEEEEec--ccCCCc-eEEEEEcCCCCCCCCCceEEEEcC
Q 041011 255 --GTQLDHAVTIIGFG--TTEDGT-KYWLIKNSWGDTWGEAGYMRIQRD 298 (313)
Q Consensus 255 --~~~~~Hav~iVGyg--~~~~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 298 (313)
.+..+|||+||||| .+.+|+ +|||||||||++||++|||+|+++
T Consensus 364 ~~~s~~~HAmlivGyg~~~d~~G~~~yWiVkNSWG~~wG~~GY~~ms~~ 412 (453)
T 2cb5_A 364 FGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDE 412 (453)
T ss_dssp TTSCCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEHH
T ss_pred ccCCCCCeEEEEEEeccccccCCCccEEEEEcCcCCCcCcCceEEechh
Confidence 23579999999999 765788 999999999999999999999986
No 42
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=100.00 E-value=9.4e-42 Score=322.12 Aligned_cols=204 Identities=16% Similarity=0.195 Sum_probs=144.5
Q ss_pred CCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhh-cCCccccCH----------------HHHhhhcCC---
Q 041011 101 QVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQIS-SGNLIRLSE----------------QQLLDCSSN--- 160 (313)
Q Consensus 101 ~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~-~~~~~~LS~----------------q~l~dc~~~--- 160 (313)
..|..|+++....+|||||||+||+|||||+++++|+.++++ +++.++||+ |+|+||+..
T Consensus 52 ~~~~~F~~~~~~~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~~~~~LSe~yl~~~dklEkan~flq~lvdc~~~~~~ 131 (457)
T 2e01_A 52 QDNRVFNTVVSTDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDID 131 (457)
T ss_dssp HCCCCCSEECC------------CCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTT
T ss_pred CCCCceEEEecCCccCcccCCCCccchhHHhHHHHHHHHHHHhCCCceeeCChhhhhhhHHHHHHHHHHHHHHhcCCccc
Confidence 467788888888899999999999999999999999999998 788999999 788999752
Q ss_pred --------CCCCCCCCChHHHHHHHHHhCCcCCCCCccC-CCC------------------------------C------
Q 041011 161 --------GNSGCVAGKSDIAFKYIIKNQGIATEADYPY-HQV------------------------------Q------ 195 (313)
Q Consensus 161 --------~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy-~~~------------------------------~------ 195 (313)
.+.+|+||.+..++.++.++ |++++++||| ... .
T Consensus 132 ~r~v~~l~~~~gcdGG~~~~a~~~i~ky-Givpe~~yP~~s~~s~ns~~~n~~L~~kLr~~a~~lR~~~~~~~~~~~~l~ 210 (457)
T 2e01_A 132 SRLVQYLLAAPTEDGGQYSMFLNLVKKY-GLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIV 210 (457)
T ss_dssp SHHHHHHHHCTTCSCBCHHHHHHHHHHH-CCCBGGGSCSCSHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred chhhhhhccCCCCCCCCHHHHHHHHHHc-CccchhhcCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 37899999999999999887 9999999999 310 0
Q ss_pred ------------------CCccc----C----C------------cc--------ceeecc-------------------
Q 041011 196 ------------------GSCGR----E----H------------AA--------AAKISS------------------- 210 (313)
Q Consensus 196 ------------------~~C~~----~----~------------~~--------~~~i~~------------------- 210 (313)
+.|+. . - .+ ...+..
T Consensus 211 ~~~~~~l~~iy~il~~~LG~pP~~~~~~F~~~~~dkd~~~~~~~~TP~~F~~~~v~~~~~dyV~l~n~p~~py~~~y~ve 290 (457)
T 2e01_A 211 TLREQMQREIFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKID 290 (457)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHTTCCCTTSEEEEECCTTSCTTCEEEET
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCceEEEEEEcCCCCccCCCcChHHHHHHHcCCCchheEEEeecCCCccCeeEEEe
Confidence 11111 0 0 00 000011
Q ss_pred ------------eEEcCCchH-HHHHHHHh-cCCeEEEEEccccccccccCceEeCCC---------------------C
Q 041011 211 ------------YEVLPSGDE-QALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGVC---------------------G 255 (313)
Q Consensus 211 ------------~~~v~~~~~-~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~~---------------------~ 255 (313)
|..+|.... +.++.+|. .|||++++++. .+.+|++|||+..| .
T Consensus 291 ~~~N~~~g~~~~y~Nvp~d~l~~~~~~aL~~g~PV~~~~Dv~--~~~~~~~GI~~~~~~~~~~fg~~~~m~KaeRl~~~~ 368 (457)
T 2e01_A 291 RLGNVLGGDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTP--KFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHE 368 (457)
T ss_dssp TCCSSTTCCCEEEEECCHHHHHHHHHHHHHTTCCEEEEECTT--TTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTS
T ss_pred ccCCeecCCceeEEEcCHHHHHHHHHHHHHhCCCEEEEEEcC--HhHcccCceecccccchhhcCcccccCHHHhhccCC
Confidence 333332111 44556777 48999999997 47788999998664 2
Q ss_pred CCCCeEEEEEEecccCCCc--eEEEEEcCCCCCCCCCceEEEEcCCCccccccceeee
Q 041011 256 TQLDHAVTIIGFGTTEDGT--KYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYP 311 (313)
Q Consensus 256 ~~~~Hav~iVGyg~~~~g~--~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p 311 (313)
+..+|||+|||||.+.+|+ +|||||||||++||++|||+|+++ .+..++.++
T Consensus 369 s~~~HAmlivGyg~d~~G~~p~yW~VkNSWG~~wG~~GY~~ms~~----wf~ey~~~i 422 (457)
T 2e01_A 369 SLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQK----YFEEYCFQI 422 (457)
T ss_dssp CCCCEEEEEEEEEECTTTCCEEEEEEECSSCTTSTBTTEEEEEHH----HHHHHEEEE
T ss_pred CCCCeEEEEEEEEeccCCCccCEEEEEeCccCCcCCCceEEeehh----hHhhccEEE
Confidence 4579999999999876788 899999999999999999999986 444444444
No 43
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=100.00 E-value=1e-36 Score=281.87 Aligned_cols=183 Identities=21% Similarity=0.267 Sum_probs=136.0
Q ss_pred CcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC-----------CCCCCCCCChHHHHHHHHHhC
Q 041011 113 AVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN-----------GNSGCVAGKSDIAFKYIIKNQ 181 (313)
Q Consensus 113 ~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~-----------~~~gc~gG~~~~a~~~~~~~~ 181 (313)
.++||||||+||||||||+++++|+.+++++++.+.||+|+|++|+.. .+.||+||.+..|+.|+.++
T Consensus 21 ~vtpVknQg~cGsCWaFSa~~~lE~~~~~k~~~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~- 99 (383)
T 3pw3_A 21 PITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETF- 99 (383)
T ss_dssp CCCCCCBCCBSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHT-
T ss_pred CCCCcccCCCCcHHHHHHhHHHHHHHHHHHcCCCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHc-
Confidence 389999999999999999999999999999999999999999999741 25799999999999999987
Q ss_pred CcCCCCCcc------CCCC------------------C--CC-------------------------cccC---------
Q 041011 182 GIATEADYP------YHQV------------------Q--GS-------------------------CGRE--------- 201 (313)
Q Consensus 182 Gi~~e~~yP------y~~~------------------~--~~-------------------------C~~~--------- 201 (313)
||+++++|| +... . .. ++..
T Consensus 100 Givpe~~YP~~~~~~~~s~n~~~m~~~L~~~Lr~~a~~~~r~l~~~~~~~~~~~~~i~~il~~~LG~pP~~F~~~gk~~T 179 (383)
T 3pw3_A 100 GLVPEEEMRPGMMYADTLSNHTELSALTDAMVAAIAKGKLRKLQSDENNAMLWKKAVAAVHQIYLGVPPEKFTYKGKEYT 179 (383)
T ss_dssp CCCBGGGSCTTGGGTCSSCBCHHHHHHHHHHHHHHHSSCCSSCCBCTTCCBHHHHHHHHHHHHHHCCCCSSEEETTEEEC
T ss_pred CcCcHHhCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceEEecCCCcC
Confidence 999999999 2210 0 00 0000
Q ss_pred -----CccceeecceEEcCC-------------------------chHHHHH----HHHhcC-CeEEEEEcccccccccc
Q 041011 202 -----HAAAAKISSYEVLPS-------------------------GDEQALL----KAVSMQ-PVSINIEGTGQDFKNYK 246 (313)
Q Consensus 202 -----~~~~~~i~~~~~v~~-------------------------~~~~~i~----~~l~~g-PV~v~~~~~~~~f~~y~ 246 (313)
......+..|..+.. -..+.|+ .+|..| ||..+.++....|. +
T Consensus 180 P~~F~~~v~~~~~dyV~l~n~p~~py~~~y~ve~~~N~~~g~~~Nvp~d~l~~~~~~~Lk~G~~V~fg~DV~~~~f~--~ 257 (383)
T 3pw3_A 180 PKSFFESTGLKASDYVSLTSYTHHPFYTQFPLEIQDNWRHGMSYNLPLDEFMEVFDNAINTGYTIAWGSDVSESGFT--R 257 (383)
T ss_dssp HHHHHHHHTCCGGGEEEEECCSSSCTTCEEECCCTTCTTCCEEEECCHHHHHHHHHHHHHTTCCEEEEEECCSTTBC--T
T ss_pred HHHHHHHhCCCccceEEEeeCCCCccCceEEEecCCCccCCccCCcCHHHHHHHHHHHHHcCCcEEEEcccCccccC--C
Confidence 000011122222100 0144444 445566 99999999833444 8
Q ss_pred CceEeCC--C---------------------------------------------CCCCCeEEEEEEecccCCCceEEEE
Q 041011 247 GGIFNGV--C---------------------------------------------GTQLDHAVTIIGFGTTEDGTKYWLI 279 (313)
Q Consensus 247 ~Giy~~~--~---------------------------------------------~~~~~Hav~iVGyg~~~~g~~ywiv 279 (313)
.||...+ - .+..+|||+|||||.+++|++||||
T Consensus 258 ~Gi~~~~~~~~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~~tk~~R~~~~d~~~t~~~Ha~~ivG~~~d~~g~~yw~v 337 (383)
T 3pw3_A 258 DGVAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWCTQAERQLAYDNYETTDDHGMQIYGIAKDQEGNEYYMV 337 (383)
T ss_dssp TSEECCBCHHHHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCCCCHHHHHHHHHTTSSCCEEEEEEEEEEECTTCCEEEEE
T ss_pred CceeeCcchhhHHHhcCcchhhhccCCHHHhhhccCCCcccCCCHHHHHHHhhhccCcCCeEEEEEEEEEcCCCceEEEE
Confidence 8987321 0 1235799999999987689999999
Q ss_pred EcCCCCCCCCCceEEEEcC
Q 041011 280 KNSWGDTWGEAGYMRIQRD 298 (313)
Q Consensus 280 kNSWG~~WG~~Gy~~i~~~ 298 (313)
|||||++||++|||+|+++
T Consensus 338 kNSWg~~~g~~Gy~~m~~~ 356 (383)
T 3pw3_A 338 KNSWGTNSKYNGIWYASKA 356 (383)
T ss_dssp ECSBCSCSTTTTEEEEEHH
T ss_pred EeCCCCCCCcCCeEEecHH
Confidence 9999999999999999985
No 44
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=99.82 E-value=3.4e-20 Score=141.45 Aligned_cols=76 Identities=36% Similarity=0.548 Sum_probs=69.9
Q ss_pred hhhhhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcC
Q 041011 3 EAASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAG 82 (313)
Q Consensus 3 ~~~~~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~ 82 (313)
++++..+...|++|+++|+|.|.+.+|+..|+.||.+|+++|++||++ +. +|++|+|+|+|||.+||+++++|
T Consensus 15 ~~~~~~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~-~~------sy~lglN~FaDLT~eEF~~~~lg 87 (106)
T 3f75_P 15 EWKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQ-GY------SYSLKMNHFGDLSRDEFRRKYLG 87 (106)
T ss_dssp -CCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTS-CC------SEEECCCTTTTCCHHHHHHHSCC
T ss_pred ccCcHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CC------CeeeCCcccccCCHHHHHHHHcC
Confidence 567788999999999999999999999999999999999999999997 56 99999999999999999998887
Q ss_pred CCc
Q 041011 83 NSM 85 (313)
Q Consensus 83 ~~~ 85 (313)
.+.
T Consensus 88 ~~~ 90 (106)
T 3f75_P 88 FKK 90 (106)
T ss_dssp BCC
T ss_pred CCC
Confidence 654
No 45
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=99.76 E-value=5.4e-19 Score=128.83 Aligned_cols=71 Identities=24% Similarity=0.432 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCCCc
Q 041011 10 AEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSM 85 (313)
Q Consensus 10 ~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~~~ 85 (313)
+..|++|+.+|+|.|.+.+|+.+| .||.+|++.|++||++.+. +..+|++|+|+|+|||.+|| +.++|.++
T Consensus 7 ~~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~---g~~sy~lg~N~FaDlT~eEf-~~~~g~~~ 77 (80)
T 2l95_A 7 DEEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEK---GEVTWKMGINHLADLTPEEF-AQRSGKKV 77 (80)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGG---TSCCCCCCCCGGGTSSHHHH-HHHHTSCC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhcc---CCCCeEecCcccccCCHHHH-HHHhCCCC
Confidence 468999999999999988899999 9999999999999986322 12389999999999999999 88877543
No 46
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=97.48 E-value=0.0012 Score=53.64 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=88.4
Q ss_pred cCCCCCccHHHHHHHHHHhHhHHhhc--------CCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhCCcCCCCCc
Q 041011 118 KNQGGCAACWAFSAVAAVEGITQISS--------GNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADY 189 (313)
Q Consensus 118 ~dQg~cGsCwAfA~~~~le~~~~~~~--------~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~y 189 (313)
..||.-+-|-+|+.++.|-+...... .-...+|+++|.++ |..+...++|.... |..+.
T Consensus 25 ETQg~~~WCa~Y~~aAilN~~~nt~~~nA~~iMr~~yPN~s~~~l~~t---------~~~~~q~Iky~~s~-G~~~~--- 91 (183)
T 1pxv_A 25 EQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNC---------ATFPNQMIEYGKSQ-GRDIH--- 91 (183)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGGC---------CBCHHHHHHHHHHT-TCCCE---
T ss_pred eccCcCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhhc---------CCCHHHHHHHHHHc-CcChh---
Confidence 45999999999999999887542211 11356777777763 45688899998854 43321
Q ss_pred cCCCCCCCcccCCccceeecceEEcCCchHHHHHHHHhc-CCeEEEEEccccccccccCceEeCCCCCCCCeEEEEEEec
Q 041011 190 PYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSM-QPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFG 268 (313)
Q Consensus 190 Py~~~~~~C~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg 268 (313)
+..-. .+.+++++.+.+ -||.|...-..+ .......+||++||||-
T Consensus 92 ---------------------~~nr~-ls~neV~~~i~~Nk~I~v~~~~v~e-----------~~~~~~~gHA~av~Gya 138 (183)
T 1pxv_A 92 ---------------------YQEGV-PSYNQVDQLTKDNVGIMILAQSVSQ-----------NPNDPHLGHALAVVGNA 138 (183)
T ss_dssp ---------------------EEESC-CCHHHHHHHHHTTCCEEEEEECCCS-----------STTSCCCEEEEEEEEEE
T ss_pred ---------------------HhcCC-CCHHHHHHHHhcCCcEEEEcccccc-----------CCCCccCceeEEEEeee
Confidence 11111 367888999985 698876653211 11234679999999999
Q ss_pred ccCCCceEEEEEcCCCCCCCCCceEEEEcCCC
Q 041011 269 TTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEG 300 (313)
Q Consensus 269 ~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~ 300 (313)
.- +++++.+|=|=|-. |++-++.+.+
T Consensus 139 ~~-~~~~~y~~WNPW~~-----~~~~~~a~S~ 164 (183)
T 1pxv_A 139 KI-NDQEKLIYWNPWDT-----ELSIQDADSS 164 (183)
T ss_dssp EE-TTEEEEEEECTTCS-----SCEEEETTCC
T ss_pred ec-CCCeEEEEeCCccC-----CcEeecCCCC
Confidence 86 58899999787753 7777765533
No 47
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=97.41 E-value=0.0021 Score=51.99 Aligned_cols=120 Identities=14% Similarity=0.181 Sum_probs=81.8
Q ss_pred cCCCCCccHHHHHHHHHHhHhHHhhc--------CCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhCCcCCCCCc
Q 041011 118 KNQGGCAACWAFSAVAAVEGITQISS--------GNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADY 189 (313)
Q Consensus 118 ~dQg~cGsCwAfA~~~~le~~~~~~~--------~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~y 189 (313)
..||.-+-|-+||.+++|-+...... .-...+|+++|..+. ..+...++|++.. |-...
T Consensus 16 ETQg~~pWCa~Ya~aailN~~~~~~~~~A~~imr~~yPn~S~~~l~~~~---------~t~~e~iky~~s~-g~~~~--- 82 (174)
T 1cv8_A 16 ETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTG---------LTPREMIYFGQTQ-GRSPQ--- 82 (174)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHCC---------CCHHHHHHHHHHT-TCCCE---
T ss_pred eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCCHHHHhhcC---------CCHHHHHHHHHHc-CCChh---
Confidence 45999999999999999987653211 123579999998544 3578889998766 32110
Q ss_pred cCCCCCCCcccCCccceeecceEEcCCchHHHHHHHHhc-CCeEEEEEccccccccccCceEeCCCCCCCCeEEEEEEec
Q 041011 190 PYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSM-QPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFG 268 (313)
Q Consensus 190 Py~~~~~~C~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg 268 (313)
+ .. .. .+.+++++.+.+ -|+.|..+-. + .. .....+|||+||||-
T Consensus 83 ----------------~-~n---~~--ls~~eV~~~~~~nk~i~i~~~~v-e----~~-------~~~~~gHAlav~Gy~ 128 (174)
T 1cv8_A 83 ----------------L-LN---RM--TTYNEVDNLTKNNKGIAILGSRV-E----SR-------NGMHAGHAMAVVGNA 128 (174)
T ss_dssp ----------------E-ES---SC--CCHHHHHHHHHTTCCEEEEEEES-S----CB-------TTBCCEEEEEEEEEE
T ss_pred ----------------h-hc---CC--CCHHHHHHHHhcCCceEEEcccc-c----CC-------CCCCCceeEEEEeee
Confidence 0 00 01 256788888885 5887666532 1 11 123579999999999
Q ss_pred ccCCCceEEEEEcCCC
Q 041011 269 TTEDGTKYWLIKNSWG 284 (313)
Q Consensus 269 ~~~~g~~ywivkNSWG 284 (313)
.-.+|.+|.++=|=|-
T Consensus 129 ~~~ng~~~y~~WNPW~ 144 (174)
T 1cv8_A 129 KLNNGQEVIIIWNPWD 144 (174)
T ss_dssp EETTSCEEEEEECTTC
T ss_pred eecCCceEEEEeCCcc
Confidence 8667889999988774
No 48
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=97.33 E-value=0.0031 Score=56.58 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=86.0
Q ss_pred cCCCCCccHHHHHHHHHHhHhHHhh--------cCCccccCHHHHhhhcCCCCCCCCCCChHHHHHHHHHhCCcCCCCCc
Q 041011 118 KNQGGCAACWAFSAVAAVEGITQIS--------SGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADY 189 (313)
Q Consensus 118 ~dQg~cGsCwAfA~~~~le~~~~~~--------~~~~~~LS~q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~y 189 (313)
..||.-+-|-+||.+++|-+..... +.-...+|+++|.++ |..+...++|+... |...
T Consensus 201 ETQg~~pWCa~Ya~aailN~~~~t~~~nA~~iMr~~yPN~S~~~l~~t---------s~~~~q~Iky~qsy-G~~~---- 266 (367)
T 1x9y_A 201 EQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNC---------ATFPNQMIEYGKSQ-GRDI---- 266 (367)
T ss_dssp CCCSSSSCHHHHHHHHHHHHHTTCSCCCHHHHHHHHCTTSCTTTGGGC---------CCCHHHHHHHHHHT-TEEE----
T ss_pred eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhhc---------CCCHHHHHHHHHHh-Ccch----
Confidence 4699999999999999987754211 111246777777763 45688899999854 4321
Q ss_pred cCCCCCCCcccCCccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccccccccccCceEeCCCCCCCCeEEEEEEec
Q 041011 190 PYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFG 268 (313)
Q Consensus 190 Py~~~~~~C~~~~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg 268 (313)
.-.... .+.+++++.+. +-||.|.+....+. ..+...+|||+||||-
T Consensus 267 -------------------~~~n~~--ls~deVk~~id~Nk~I~v~~~~v~~~-----------~n~~~~gHAlavvGyA 314 (367)
T 1x9y_A 267 -------------------HYQEGV--PSYNQVDQLTKDNVGIMILAQSVSQN-----------PNDPHLGHALAVVGNA 314 (367)
T ss_dssp -------------------EEEESC--CCHHHHHHHHHTTCCEEEEEEETTSC-----------SSSCCCSEEEEEEEEE
T ss_pred -------------------hhhcCC--CCHHHHHHHHhcCCcEEEEccccccC-----------CCCccCceeEEEEecc
Confidence 111112 25678888887 57998877644111 1223679999999997
Q ss_pred ccCCCceEEEEEcCCCCCCCCCceEEEEcCC
Q 041011 269 TTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE 299 (313)
Q Consensus 269 ~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~ 299 (313)
.. ++.+|.++=|=|-. +++-++...
T Consensus 315 ~~-~~~~~y~~WNPW~~-----~~~~~sa~S 339 (367)
T 1x9y_A 315 KI-NDQEKLIYWNPWDT-----ELSIQDADS 339 (367)
T ss_dssp EE-TTEEEEEEECTTCS-----SCEEEETTC
T ss_pred cc-CCCcEEEEecCccC-----CceeecCCC
Confidence 66 48899999777643 366665543
No 49
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=89.81 E-value=1.4 Score=37.76 Aligned_cols=54 Identities=28% Similarity=0.391 Sum_probs=33.6
Q ss_pred EcCCchHHHHHHHHhcC-CeEEEEEcccc-----ccccc--cCceEeCCCCCCCCeEEEEEEecc
Q 041011 213 VLPSGDEQALLKAVSMQ-PVSINIEGTGQ-----DFKNY--KGGIFNGVCGTQLDHAVTIIGFGT 269 (313)
Q Consensus 213 ~v~~~~~~~i~~~l~~g-PV~v~~~~~~~-----~f~~y--~~Giy~~~~~~~~~Hav~iVGyg~ 269 (313)
.+...+.++|++.|.+| ||+|-....-. .|..+ .+|-... ...+|+|+|+||+.
T Consensus 126 dltG~sl~~L~~~I~~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~---~~~~H~VVl~GYd~ 187 (236)
T 3erv_A 126 DLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNNGDVSI---TYNEHCVVLIGYDQ 187 (236)
T ss_dssp ECTTSCHHHHHHHHHTTCCEEEEEETTSSCCCGGGCEEEEETTEEEEE---CTTEEEEEEEEECS
T ss_pred ecCCCCHHHHHHHHHCCCeEEEEEeCCcccccccccceeecCCCceee---ccCCeEEEEEEEeC
Confidence 45556899999999986 99987654200 11111 1222111 24589999999985
No 50
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A {Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Probab=58.77 E-value=21 Score=32.53 Aligned_cols=54 Identities=26% Similarity=0.454 Sum_probs=36.2
Q ss_pred HHHHHHHhc-CCeEEEEEccccccccccCceEeCCCCCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEc
Q 041011 220 QALLKAVSM-QPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQR 297 (313)
Q Consensus 220 ~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~ 297 (313)
+.|+..|.+ .||.+.-... .++||.+|=||..+ +||=|==.||-. .+|||.+.-
T Consensus 290 ~~i~~eL~~~rPV~~~G~~~------------------~gGHAfV~DGy~~~----~~~H~NwGWgG~--~nGyy~l~~ 344 (371)
T 1dki_A 290 AQIDKELSQNQPVYYQGVGK------------------VGGHAFVIDGADGR----NFYHVNWGWGGV--SDGFFRLDA 344 (371)
T ss_dssp HHHHHHHHTTCCEEEEEEET------------------TEEEEEEEEEECSS----SEEEEECSSTTT--TCEEEESCC
T ss_pred HHHHHHHHcCCCEEEEeecC------------------CCceEEEECcccCC----CeEEEEeCcCCC--CCcceeccC
Confidence 457777875 6997543211 26999999999753 677774444422 589999853
No 51
>3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial odontopatho hydrolase; 1.50A {Prevotella intermedia} PDB: 3bba_A
Probab=57.59 E-value=22 Score=31.65 Aligned_cols=59 Identities=17% Similarity=0.358 Sum_probs=36.7
Q ss_pred HHHHHHHhc-CCeEEEEEccccccccccCceEeCCCCCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEc
Q 041011 220 QALLKAVSM-QPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQR 297 (313)
Q Consensus 220 ~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~ 297 (313)
+.|+..|.+ .||.+.-.-. .. . +...+||.+|=||..+ +||=|==.||-. .+|||.+..
T Consensus 239 ~~i~~eL~~~rPV~~~G~~~--~~------~-----~~~~GHafV~DGY~~~----~~~H~NwGWgG~--~nGyy~l~~ 298 (321)
T 3bb7_A 239 DIVFSELTKGHPLIYGGVSP--GS------M-----GQDAGHAFVIDGYNKA----GLVSVNWGWNGD--VDGYYKIDL 298 (321)
T ss_dssp HHHHHHHHTTCCEEEEEC--------------------CCCEEEEEEEECTT----SCEEEECSSTTT--TCEEECCTT
T ss_pred HHHHHHHHhCCCEEEEEecC--CC------C-----CCCCceEEEEccccCC----CeEEEecCCCCC--CCceEeccC
Confidence 457778875 6987643221 11 1 1357999999999864 677775455522 389999853
No 52
>4d8b_A Streptopain; papain fold, cysteine protease, secreted, hydrolase; 1.06A {Streptococcus pyogenes} PDB: 4d8e_A* 4d8i_A* 2uzj_A* 2jtc_A
Probab=53.89 E-value=20 Score=30.94 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=36.4
Q ss_pred HHHHHHHhc-CCeEEEEEccccccccccCceEeCCCCCCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEc
Q 041011 220 QALLKAVSM-QPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQR 297 (313)
Q Consensus 220 ~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~ 297 (313)
+.|+..|.. .||.+.-.. ...+||.+|=||..+ +|+-|==.||- -.+|||.+..
T Consensus 172 ~~I~~eL~~grPV~~~G~~------------------~~gGHAwViDGY~~~----~~~H~NwGWgG--~~nGYy~l~~ 226 (261)
T 4d8b_A 172 AQIDKELSQNQPVYYQGVG------------------KVGGHAFVIDGADGR----NFYHVNWGWGG--VSDGFFRLDA 226 (261)
T ss_dssp HHHHHHHHTTCCEEEEEEE------------------TTEEEEEEEEEEESS----SCEEEECSSTT--TTCEEECTTC
T ss_pred HHHHHHHHcCCCEEEEeec------------------CCCceEEEEcccccC----CEEEEEcCCCC--CCCceeeccc
Confidence 567788875 699765421 146999999999753 57766433331 1589999853
No 53
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=24.69 E-value=24 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=19.3
Q ss_pred cCcccCCCCCccHHHHHHHHHHhHhHHh
Q 041011 114 VTSIKNQGGCAACWAFSAVAAVEGITQI 141 (313)
Q Consensus 114 v~pV~dQg~cGsCwAfA~~~~le~~~~~ 141 (313)
+--|+=||.|++| ...-..+|..++.
T Consensus 37 ~V~v~l~GaC~gc--~Tlk~gIe~~L~~ 62 (74)
T 1th5_A 37 IVKVRLTGPAAVV--RTVRIAVSKKLRE 62 (74)
T ss_dssp EEEECCCSSSSSS--SSHHHHHHHHHHH
T ss_pred EEEEEEecCCcch--HHHHHHHHHHHHH
Confidence 4568899999999 3444688877664
No 54
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=24.11 E-value=64 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.477 Sum_probs=0.0
Q ss_pred CeEEEEEEeccc---CCCceEEEEEcCCC-CCCC-------------------------CCceEEEE
Q 041011 259 DHAVTIIGFGTT---EDGTKYWLIKNSWG-DTWG-------------------------EAGYMRIQ 296 (313)
Q Consensus 259 ~Hav~iVGyg~~---~~g~~ywivkNSWG-~~WG-------------------------~~Gy~~i~ 296 (313)
+||-.|++.... ..+...-.|||-|| ..|- ++|-|||+
T Consensus 246 ~HaYsVl~v~~v~~~~~~~~Lv~LrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~dG~FWMs 312 (339)
T 2r9f_A 246 GHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMS 312 (339)
T ss_dssp TCCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTCGGGGGSCHHHHHHHCCCCCSSEEEEE
T ss_pred CceEEEeEEEEEecCCCceEEEEEeCCCCCccccCCCCcCCccccccCHHHHHHhCCCCCCCEEEEE
Done!