Query 041015
Match_columns 211
No_of_seqs 287 out of 1256
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.9 3.6E-22 7.9E-27 140.0 7.6 61 59-119 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.9 3.1E-21 6.7E-26 136.9 8.5 62 60-121 1-62 (64)
3 PHA00280 putative NHN endonucl 99.5 1.4E-14 3E-19 115.7 6.8 56 55-113 63-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.2 4.2E-11 9.2E-16 81.9 5.5 52 59-110 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 78.2 10 0.00022 24.8 5.7 37 71-107 1-41 (46)
6 cd00801 INT_P4 Bacteriophage P 64.1 15 0.00033 31.8 5.2 38 70-107 10-49 (357)
7 PHA02601 int integrase; Provis 61.7 13 0.00028 32.7 4.4 41 63-104 2-43 (333)
8 PF13356 DUF4102: Domain of un 60.9 28 0.0006 25.5 5.4 38 65-102 28-69 (89)
9 PF08846 DUF1816: Domain of un 53.0 34 0.00073 25.0 4.6 40 71-110 9-48 (68)
10 PRK09692 integrase; Provisiona 49.9 49 0.0011 30.3 6.3 35 64-98 33-73 (413)
11 PF05036 SPOR: Sporulation rel 42.3 37 0.0008 22.9 3.3 24 81-104 42-65 (76)
12 PF08471 Ribonuc_red_2_N: Clas 36.0 40 0.00088 26.1 2.9 21 87-107 70-90 (93)
13 PF10729 CedA: Cell division a 34.4 64 0.0014 24.0 3.6 38 58-98 30-67 (80)
14 PF14112 DUF4284: Domain of un 32.0 31 0.00068 27.3 1.8 18 83-100 2-19 (122)
15 COG2185 Sbm Methylmalonyl-CoA 23.8 59 0.0013 26.9 2.1 17 83-99 42-58 (143)
16 cd01433 Ribosomal_L16_L10e Rib 23.7 1.5E+02 0.0032 22.9 4.2 43 63-107 59-105 (112)
17 PRK10113 cell division modulat 23.1 67 0.0014 23.8 2.0 37 59-98 31-67 (80)
18 PRK09203 rplP 50S ribosomal pr 22.8 1.5E+02 0.0033 24.0 4.3 35 72-109 93-127 (138)
19 TIGR01164 rplP_bact ribosomal 21.9 1.9E+02 0.0041 23.1 4.6 34 71-107 91-124 (126)
20 PF14032 PknH_C: PknH-like ext 21.6 1.7E+02 0.0036 23.7 4.4 24 86-109 86-109 (189)
21 PF09954 DUF2188: Uncharacteri 20.5 1.7E+02 0.0036 20.0 3.6 35 64-102 3-37 (62)
22 PRK10927 essential cell divisi 20.1 1.5E+02 0.0033 27.7 4.1 33 72-104 273-305 (319)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.87 E-value=3.6e-22 Score=139.99 Aligned_cols=61 Identities=64% Similarity=1.085 Sum_probs=57.9
Q ss_pred CceeEEEeCCCCcEEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 041015 59 PTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPEL 119 (211)
Q Consensus 59 S~yRGVr~r~~GkW~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l~G~~A~lNFp~s 119 (211)
|+||||+++++|||+|+|+++..++++|||+|+|+|||++|||.++++++|.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899999998999999999966699999999999999999999999999999999999985
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.85 E-value=3.1e-21 Score=136.89 Aligned_cols=62 Identities=61% Similarity=1.052 Sum_probs=59.2
Q ss_pred ceeEEEeCCCCcEEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 041015 60 TYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAHLNFPELAD 121 (211)
Q Consensus 60 ~yRGVr~r~~GkW~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l~G~~A~lNFp~s~~ 121 (211)
+|+||+++++|||+|+|++|.+++++|||+|+|+||||+|||.++++++|..+.+|||.+.+
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y 62 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY 62 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence 59999999899999999999999999999999999999999999999999999999998755
No 3
>PHA00280 putative NHN endonuclease
Probab=99.53 E-value=1.4e-14 Score=115.74 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCCCceeEEEeCCC-CcEEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 041015 55 LNKYPTYRGVRMRSW-GKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGHSAH 113 (211)
Q Consensus 55 ~~~~S~yRGVr~r~~-GkW~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l~G~~A~ 113 (211)
.+++|+|+||+|++. |||+|+|++ .||+++||.|+++|+|+.||+ ++.+|+|.+|.
T Consensus 63 ~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 63 KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 378899999998854 999999999 999999999999999999997 77889999875
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.18 E-value=4.2e-11 Score=81.86 Aligned_cols=52 Identities=31% Similarity=0.489 Sum_probs=45.4
Q ss_pred CceeEEEeCC-CCcEEEEEeeCCC---CeEEecCCCCCHHHHHHHHHHHHHHhcCC
Q 041015 59 PTYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGSFPTAEMAARAHDVAALAIKGH 110 (211)
Q Consensus 59 S~yRGVr~r~-~GkW~A~I~~p~~---~kri~LGtF~T~EeAArAYD~Aal~l~G~ 110 (211)
|+|+||++++ .++|+|+|+++.. +++++||.|++++||+++|+.+.+.++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 6899999886 4999999999421 49999999999999999999999999874
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=78.22 E-value=10 Score=24.84 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=28.5
Q ss_pred cEEEEEe--eC--CCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 041015 71 KWVSEIR--QP--RKKSRIWLGSFPTAEMAARAHDVAALAI 107 (211)
Q Consensus 71 kW~A~I~--~p--~~~kri~LGtF~T~EeAArAYD~Aal~l 107 (211)
+|...|. .+ ++.++++-+-|.|..||-.+.......+
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~ 41 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL 41 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 5777773 44 3447889999999999999988766655
No 6
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=64.08 E-value=15 Score=31.82 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=27.3
Q ss_pred CcEEEEEeeCCCCeEEecCCCC--CHHHHHHHHHHHHHHh
Q 041015 70 GKWVSEIRQPRKKSRIWLGSFP--TAEMAARAHDVAALAI 107 (211)
Q Consensus 70 GkW~A~I~~p~~~kri~LGtF~--T~EeAArAYD~Aal~l 107 (211)
+.|..+++..++..++.||+|+ +.++|..........+
T Consensus 10 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~ 49 (357)
T cd00801 10 KSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL 49 (357)
T ss_pred EEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 5699999997777788999995 6667666655443333
No 7
>PHA02601 int integrase; Provisional
Probab=61.66 E-value=13 Score=32.69 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=28.0
Q ss_pred EEEeCCCCcEEEEEeeC-CCCeEEecCCCCCHHHHHHHHHHHH
Q 041015 63 GVRMRSWGKWVSEIRQP-RKKSRIWLGSFPTAEMAARAHDVAA 104 (211)
Q Consensus 63 GVr~r~~GkW~A~I~~p-~~~kri~LGtF~T~EeAArAYD~Aa 104 (211)
+|++.+.|+|.++|+.. ..|+++.. +|.|..||-...+...
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~~-~f~tk~eA~~~~~~~~ 43 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIRK-RFATKGEALAFENYTM 43 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhhh-hhcCHHHHHHHHHHHH
Confidence 46666678999999862 24666553 6999988866555443
No 8
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=60.90 E-value=28 Score=25.49 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=25.2
Q ss_pred EeCCCC--cEEEEEeeCCCCeEEecCCCCC--HHHHHHHHHH
Q 041015 65 RMRSWG--KWVSEIRQPRKKSRIWLGSFPT--AEMAARAHDV 102 (211)
Q Consensus 65 r~r~~G--kW~A~I~~p~~~kri~LGtF~T--~EeAArAYD~ 102 (211)
+..+.| .|.-+.+..++.+++.||.|+. ..+|......
T Consensus 28 ~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~ 69 (89)
T PF13356_consen 28 RVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKARE 69 (89)
T ss_dssp EE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHH
T ss_pred EEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHH
Confidence 444444 4999998866668899999975 5555444443
No 9
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=53.03 E-value=34 Score=25.01 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.2
Q ss_pred cEEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC
Q 041015 71 KWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKGH 110 (211)
Q Consensus 71 kW~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l~G~ 110 (211)
.|=++|.--.-.-..|.|-|.|.+||..+.---...|..+
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~E 48 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLESE 48 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHhh
Confidence 4777887755567899999999999999876555555433
No 10
>PRK09692 integrase; Provisional
Probab=49.94 E-value=49 Score=30.34 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=22.4
Q ss_pred EEeCCCC--cEEEEEeeCC--CCeEEecCCCC--CHHHHHH
Q 041015 64 VRMRSWG--KWVSEIRQPR--KKSRIWLGSFP--TAEMAAR 98 (211)
Q Consensus 64 Vr~r~~G--kW~A~I~~p~--~~kri~LGtF~--T~EeAAr 98 (211)
|+.++.| .|+.+.+.+. +.+++-||.|+ |..+|..
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~ 73 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARN 73 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHH
Confidence 4445554 4998887553 33447899999 5655544
No 11
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=42.33 E-value=37 Score=22.92 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=18.8
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q 041015 81 KKSRIWLGSFPTAEMAARAHDVAA 104 (211)
Q Consensus 81 ~~kri~LGtF~T~EeAArAYD~Aa 104 (211)
..-+|++|.|++.++|..+-....
T Consensus 42 ~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 42 PWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TCEEEEECCECTCCHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHh
Confidence 456889999999999988766444
No 12
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=36.04 E-value=40 Score=26.12 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=17.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 041015 87 LGSFPTAEMAARAHDVAALAI 107 (211)
Q Consensus 87 LGtF~T~EeAArAYD~Aal~l 107 (211)
-|+|+|+|+|..-||.....|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 399999999999999866554
No 13
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=34.40 E-value=64 Score=23.99 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCceeEEEeCCCCcEEEEEeeCCCCeEEecCCCCCHHHHHH
Q 041015 58 YPTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAAR 98 (211)
Q Consensus 58 ~S~yRGVr~r~~GkW~A~I~~p~~~kri~LGtF~T~EeAAr 98 (211)
--+||-|..-+ |||+|.+-. +..-..--.|..+|.|-|
T Consensus 30 ~dgfrdvw~lr-gkyvafvl~--ge~f~rsp~fs~pesaqr 67 (80)
T PF10729_consen 30 MDGFRDVWQLR-GKYVAFVLM--GEHFRRSPAFSVPESAQR 67 (80)
T ss_dssp TTTECCECCCC-CEEEEEEES--SS-EEE---BSSHHHHHH
T ss_pred cccccceeeec-cceEEEEEe--cchhccCCCcCCcHHHHH
Confidence 34688885444 999999987 333333456777777655
No 14
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=32.02 E-value=31 Score=27.27 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=14.0
Q ss_pred eEEecCCCCCHHHHHHHH
Q 041015 83 SRIWLGSFPTAEMAARAH 100 (211)
Q Consensus 83 kri~LGtF~T~EeAArAY 100 (211)
-.||||+|.+.++--.=.
T Consensus 2 VsiWiG~f~s~~el~~Y~ 19 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEYF 19 (122)
T ss_pred eEEEEecCCCHHHHHHHh
Confidence 368999999988766544
No 15
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.84 E-value=59 Score=26.95 Aligned_cols=17 Identities=53% Similarity=0.548 Sum_probs=15.3
Q ss_pred eEEecCCCCCHHHHHHH
Q 041015 83 SRIWLGSFPTAEMAARA 99 (211)
Q Consensus 83 kri~LGtF~T~EeAArA 99 (211)
.-|++|.|.|+||++++
T Consensus 42 eVi~~g~~~tp~e~v~a 58 (143)
T COG2185 42 EVINLGLFQTPEEAVRA 58 (143)
T ss_pred eEEecCCcCCHHHHHHH
Confidence 56899999999999987
No 16
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=23.74 E-value=1.5e+02 Score=22.92 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=29.4
Q ss_pred EEEeCCC-C---cEEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 041015 63 GVRMRSW-G---KWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAI 107 (211)
Q Consensus 63 GVr~r~~-G---kW~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l 107 (211)
++|+.+. | .|++.|.. ...=+-++.....+.|..|...++.+|
T Consensus 59 ~~rMGkGKG~~~~~~a~v~~--G~iifEi~~~~~~~~~~~alk~a~~Kl 105 (112)
T cd01433 59 ETRMGKGKGKPEGWVARVKP--GQILFEVRGVPEEEVAKEALRRAAKKL 105 (112)
T ss_pred ccccCCCCCCccEEEEEECC--CCEEEEEeCcCcHHHHHHHHHHhhccC
Confidence 4566543 4 39999987 555555666555888888888877765
No 17
>PRK10113 cell division modulator; Provisional
Probab=23.05 E-value=67 Score=23.84 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=21.8
Q ss_pred CceeEEEeCCCCcEEEEEeeCCCCeEEecCCCCCHHHHHH
Q 041015 59 PTYRGVRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAAR 98 (211)
Q Consensus 59 S~yRGVr~r~~GkW~A~I~~p~~~kri~LGtF~T~EeAAr 98 (211)
-+||-|..-+ |||+|.+.. ...-..--.|..+|.|-|
T Consensus 31 d~frDVW~Lr-GKYVAFvl~--ge~FrRSPaFs~PEsAQR 67 (80)
T PRK10113 31 DSFRDVWMLR-GKYVAFVLM--GESFLRSPAFSVPESAQR 67 (80)
T ss_pred cchhhhheec-cceEEEEEe--chhhccCCccCCcHHHHH
Confidence 4577775444 999999876 221112235666666544
No 18
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=22.76 E-value=1.5e+02 Score=24.05 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.3
Q ss_pred EEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC
Q 041015 72 WVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAIKG 109 (211)
Q Consensus 72 W~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l~G 109 (211)
|+|.|.. ..-=+-++. .+++.|..|+..|+.+|=+
T Consensus 93 ~varVk~--G~iifEi~~-~~~~~a~~al~~a~~KLP~ 127 (138)
T PRK09203 93 WVAVVKP--GRILFEIAG-VSEELAREALRLAAAKLPI 127 (138)
T ss_pred EEEEECC--CCEEEEEeC-CCHHHHHHHHHHHhccCCC
Confidence 9999987 555555666 8899999999998877643
No 19
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=21.94 E-value=1.9e+02 Score=23.14 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=26.3
Q ss_pred cEEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 041015 71 KWVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAALAI 107 (211)
Q Consensus 71 kW~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aal~l 107 (211)
.|+|.|.. ...=+-++. .+++.|..|.-.|+.+|
T Consensus 91 ~~varV~~--G~ilfEi~~-~~~~~a~~al~~a~~KL 124 (126)
T TIGR01164 91 YWVAVVKP--GKILFEIAG-VPEEVAREAFRLAASKL 124 (126)
T ss_pred EEEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcC
Confidence 39999987 555555555 89999999998888765
No 20
>PF14032 PknH_C: PknH-like extracellular domain
Probab=21.60 E-value=1.7e+02 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=19.9
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcC
Q 041015 86 WLGSFPTAEMAARAHDVAALAIKG 109 (211)
Q Consensus 86 ~LGtF~T~EeAArAYD~Aal~l~G 109 (211)
-++.|+++++|.++|+..+..+++
T Consensus 86 aV~~fp~~~~A~~~f~~~~~~w~~ 109 (189)
T PF14032_consen 86 AVVVFPSAAAAQAFFARLADQWRA 109 (189)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHh
Confidence 357999999999999987777644
No 21
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=20.54 E-value=1.7e+02 Score=19.99 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=22.3
Q ss_pred EEeCCCCcEEEEEeeCCCCeEEecCCCCCHHHHHHHHHH
Q 041015 64 VRMRSWGKWVSEIRQPRKKSRIWLGSFPTAEMAARAHDV 102 (211)
Q Consensus 64 Vr~r~~GkW~A~I~~p~~~kri~LGtF~T~EeAArAYD~ 102 (211)
|..+..|.|...... ..+. ..+|+|.++|..+=-.
T Consensus 3 V~p~~~~~W~v~~eg--~~ra--~~~~~Tk~eAi~~Ar~ 37 (62)
T PF09954_consen 3 VVPREDGGWAVKKEG--AKRA--SKTFDTKAEAIEAARE 37 (62)
T ss_pred EEecCCCCceEEeCC--Cccc--ccccCcHHHHHHHHHH
Confidence 444445789877654 3322 6899999988765333
No 22
>PRK10927 essential cell division protein FtsN; Provisional
Probab=20.12 E-value=1.5e+02 Score=27.75 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=23.6
Q ss_pred EEEEEeeCCCCeEEecCCCCCHHHHHHHHHHHH
Q 041015 72 WVSEIRQPRKKSRIWLGSFPTAEMAARAHDVAA 104 (211)
Q Consensus 72 W~A~I~~p~~~kri~LGtF~T~EeAArAYD~Aa 104 (211)
|.|+|...+.-.||.||-|.+.++|-++.++..
T Consensus 273 ~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk 305 (319)
T PRK10927 273 FDSKITTNNGWNRVVIGPVKGKENADSTLNRLK 305 (319)
T ss_pred CeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344554323347899999999999999977543
Done!