BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041016
(757 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 224/767 (29%), Positives = 332/767 (43%), Gaps = 113/767 (14%)
Query: 57 LETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLD 116
L W+S+ + C ++ V CR +VT +DL++ PL+ + S V + + + L +L
Sbjct: 30 LPDWSSNKNPCTFDGVTCRD----DKVTSIDLSSK-PLN-VGFSAVSSSLLSLTGLESLF 83
Query: 117 LSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPS--QLFNLRYLEFLDLSANAIE-- 172
LS + + G V +GF LT LDL N+L+G + + L + L+FL++S+N ++
Sbjct: 84 LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 173 GKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG-----NLTNLHKLSLRQNKFSGGIPLSL 227
GK+S + L +L+ L L N I G +G L L++ NK SG + +S
Sbjct: 142 GKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS- 197
Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
+ LE LD+ N+ S IP +G + + L +S N L+G ++I T+L L +
Sbjct: 198 -RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 288 SNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL 347
SN G I +P L LSL G IP +L
Sbjct: 256 SNQFVGPIPP--------------------------LPLKSLQYLSLAENKFTGEIPDFL 289
Query: 348 STQTE-LTFLDLSENELEGTYPQWLSELNLGTVILSD-NMLTGSLP-PPLFESRNLSVLV 404
S + LT LDLS N G P + +L + N +G LP L + R L VL
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 405 LSRNNFSGELPETIGQ-STSVMVLMLSSNNFSGHV-PKSISNIYRLLV-LDLSNNSFSGE 461
LS N FSGELPE++ S S++ L LSSNNFSG + P N L L L NN F+G+
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 462 FPAFGSD-SLVGHVDISSNRFSGEVPSSFGV--TILMLSLSENKFSGQLPXXXXXXXXXX 518
P S+ S + + +S N SG +PSS G + L L N G++P
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 519 XXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGK 578
TGE P+ ++L N L G I + L +L IL LSNN+ G
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 579 IPSSFGNLQGMI----DTPSILPTLPEIFSFPVEIQDLIVNWKNSKR-------GLSSKS 627
IP+ G+ + +I +T T+P + + + N+ KR G+ +
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 628 LAIYSLMDLSN------NQLSGEIPXXXXXXXXXXXXX-------------XXYNQLQGN 668
+L++ N+LS P YN L G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 669 IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES-------- 720
IP G++ L L+L HN +SG IP L+ L L LS+NKL GRIP++
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 721 -------------PQMDR--QIDPVIYANNSGLCGMQIQVVCPEDVQ 752
P+M + P + NN GLCG + P +
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 754
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 185/644 (28%), Positives = 274/644 (42%), Gaps = 76/644 (11%)
Query: 49 SADAMLGGLETWNSSSDCCRWEMVRCRSRG---PSQEVTGLDLNNLFPLDSIVTSVVLAP 105
S +++ G + T S C + + S P + GL LN+L LD S+ A
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 106 IFR------IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLR 159
+ L L +S N + G+V + L +LD+ NN + IP L +
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223
Query: 160 YLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
L+ LD+S N + G S ++ LK L + N G IP L +L LSL +NKF
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKF 281
Query: 220 SGGIPLSLL-QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP-QSIRN 277
+G IP L L LDL N G +P G+ + + LALS+N +G +P ++
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 278 MTKLVTLRLDSNVLSGEISTWLFDLQG-MKSLYLGGNKLKWN--DNVSIVPKCMLTELSL 334
M L L L N SGE+ L +L + +L L N N+ PK L EL L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 335 RSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ-------------WLSEL------- 374
++ G IP LS +EL L LS N L GT P WL+ L
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 375 -----NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLML 429
L T+IL N LTG +P L NL+ + LS N +GE+P+ IG+ ++ +L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 430 SSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA--FGSDSLVGHVDISSNRF-----S 482
S+N+FSG++P + + L+ LDL+ N F+G PA F + I+ R+
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 483 GEVPSSFGVTILMLSLSENKFSGQLPXXXXXXXXXXXXXXXXXXXTGEFPAFXXXXXXXX 542
G G L+ +F G G
Sbjct: 582 GMKKECHGAGNLL------EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 543 VLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEI 602
L++ L G I + ++ L IL+L +N++ G IP G+L+G+
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL------------- 682
Query: 603 FSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIP 646
I DL N + + + +L + + +DLSNN LSG IP
Sbjct: 683 -----NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 224/767 (29%), Positives = 332/767 (43%), Gaps = 113/767 (14%)
Query: 57 LETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLD 116
L W+S+ + C ++ V CR +VT +DL++ PL+ + S V + + + L +L
Sbjct: 27 LPDWSSNKNPCTFDGVTCRD----DKVTSIDLSSK-PLN-VGFSAVSSSLLSLTGLESLF 80
Query: 117 LSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPS--QLFNLRYLEFLDLSANAIE-- 172
LS + + G V +GF LT LDL N+L+G + + L + L+FL++S+N ++
Sbjct: 81 LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 173 GKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG-----NLTNLHKLSLRQNKFSGGIPLSL 227
GK+S + L +L+ L L N I G +G L L++ NK SG + +S
Sbjct: 139 GKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS- 194
Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
+ LE LD+ N+ S IP +G + + L +S N L+G ++I T+L L +
Sbjct: 195 -RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 288 SNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL 347
SN G I +P L LSL G IP +L
Sbjct: 253 SNQFVGPIPP--------------------------LPLKSLQYLSLAENKFTGEIPDFL 286
Query: 348 STQTE-LTFLDLSENELEGTYPQWLSELNLGTVILSD-NMLTGSLP-PPLFESRNLSVLV 404
S + LT LDLS N G P + +L + N +G LP L + R L VL
Sbjct: 287 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 346
Query: 405 LSRNNFSGELPETIGQ-STSVMVLMLSSNNFSGHV-PKSISNIYRLLV-LDLSNNSFSGE 461
LS N FSGELPE++ S S++ L LSSNNFSG + P N L L L NN F+G+
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 462 FPAFGSD-SLVGHVDISSNRFSGEVPSSFGV--TILMLSLSENKFSGQLPXXXXXXXXXX 518
P S+ S + + +S N SG +PSS G + L L N G++P
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 519 XXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGK 578
TGE P+ ++L N L G I + L +L IL LSNN+ G
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 579 IPSSFGNLQGMI----DTPSILPTLPEIFSFPVEIQDLIVNWKNSKR-------GLSSKS 627
IP+ G+ + +I +T T+P + + + N+ KR G+ +
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 628 LAIYSLMDLSN------NQLSGEIPXXXXXXXXXXXXX-------------XXYNQLQGN 668
+L++ N+LS P YN L G
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 669 IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES-------- 720
IP G++ L L+L HN +SG IP L+ L L LS+NKL GRIP++
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 721 -------------PQMDR--QIDPVIYANNSGLCGMQIQVVCPEDVQ 752
P+M + P + NN GLCG + P +
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 751
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 185/644 (28%), Positives = 274/644 (42%), Gaps = 76/644 (11%)
Query: 49 SADAMLGGLETWNSSSDCCRWEMVRCRSRG---PSQEVTGLDLNNLFPLDSIVTSVVLAP 105
S +++ G + T S C + + S P + GL LN+L LD S+ A
Sbjct: 105 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 164
Query: 106 IFR------IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLR 159
+ L L +S N + G+V + L +LD+ NN + IP L +
Sbjct: 165 VVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGDCS 220
Query: 160 YLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
L+ LD+S N + G S ++ LK L + N G IP L +L LSL +NKF
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKF 278
Query: 220 SGGIPLSLL-QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP-QSIRN 277
+G IP L L LDL N G +P G+ + + LALS+N +G +P ++
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 278 MTKLVTLRLDSNVLSGEISTWLFDLQG-MKSLYLGGNKLKWN--DNVSIVPKCMLTELSL 334
M L L L N SGE+ L +L + +L L N N+ PK L EL L
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 335 RSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ-------------WLSEL------- 374
++ G IP LS +EL L LS N L GT P WL+ L
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 375 -----NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLML 429
L T+IL N LTG +P L NL+ + LS N +GE+P+ IG+ ++ +L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 430 SSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA--FGSDSLVGHVDISSNRF-----S 482
S+N+FSG++P + + L+ LDL+ N F+G PA F + I+ R+
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 483 GEVPSSFGVTILMLSLSENKFSGQLPXXXXXXXXXXXXXXXXXXXTGEFPAFXXXXXXXX 542
G G L+ +F G G
Sbjct: 579 GMKKECHGAGNLL------EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 543 VLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEI 602
L++ L G I + ++ L IL+L +N++ G IP G+L+G+
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL------------- 679
Query: 603 FSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIP 646
I DL N + + + +L + + +DLSNN LSG IP
Sbjct: 680 -----NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 52/304 (17%)
Query: 23 LCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCR--WEMVRCRSRGPS 80
LC P+D K ALL+ K DL + ++ L +W ++DCC W V C + +
Sbjct: 2 LCNPQD-KQALLQIKK----DLGNPTT-------LSSWLPTTDCCNRTWLGVLCDTDTQT 49
Query: 81 QEVTGLDLNNL-----FPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLT 135
V LDL+ L +P+ S + ++ I + N++ G +P A LT
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-------NNLVGPIP-PAIAKLT 101
Query: 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLI 195
+L YL + N++G+IP L ++ L LD S NA+ G L ++ L NL + D N I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 196 QGQIPAEIGNLTNLH-KLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGE-------- 246
G IP G+ + L +++ +N+ +G IP + L L +DL RN L G+
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 247 ------------IPEDIGTLA---NITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL 291
+ D+G + N+ L L NN + G +PQ + + L +L + N L
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 292 SGEI 295
GEI
Sbjct: 281 CGEI 284
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 131/325 (40%), Gaps = 78/325 (24%)
Query: 136 RLTYLDLKDNNLNGS--IPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN 193
R+ LDL NL IPS L NL YL FL + G+ NL
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFL-------------YIGGINNL-------- 89
Query: 194 LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT 253
G IP I LT LH L + SG IP L Q++ L TLD N+LSG +P I +
Sbjct: 90 --VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 254 LANITILALSNNALTGAIPQSIRNMTKLVT-LRLDSNVLSGEISTWLFDLQGMKSLYLGG 312
L N+ + N ++GAIP S + +KL T + + N L+G+I +L
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---------- 197
Query: 313 NKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWL- 371
L F+DLS N LEG
Sbjct: 198 ---------------------------------------NLAFVDLSRNMLEGDASVLFG 218
Query: 372 SELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSS 431
S+ N + L+ N L L + S+NL+ L L N G LP+ + Q + L +S
Sbjct: 219 SDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 432 NNFSGHVPKSISNIYRLLVLDLSNN 456
NN G +P+ N+ R V +NN
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANN 301
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 123/277 (44%), Gaps = 20/277 (7%)
Query: 325 PKCMLTELSLRSCSVRGSIPLWLSTQTE---LTFLDLSENELEGTYP--------QWLSE 373
P + + L C R + + T T+ + LDLS L YP +L+
Sbjct: 21 PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80
Query: 374 LNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNN 433
L +G + N L G +PP + + L L ++ N SG +P+ + Q +++ L S N
Sbjct: 81 LYIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 434 FSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDS-LVGHVDISSNRFSGEVPSSFG- 490
SG +P SIS++ L+ + N SG P ++GS S L + IS NR +G++P +F
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 491 VTILMLSLSENKFSGQLPXXXXXXXXXXXXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTA 550
+ + + LS N G + L+LRN
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG-LDLRNNR 255
Query: 551 LEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQ 587
+ G++ GL+ L L L++S NNL G+IP GNLQ
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 27/247 (10%)
Query: 223 IPLSLLQLRKLETLDLQR-NSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKL 281
IP SL L L L + N+L G IP I L + L +++ ++GAIP + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 282 VTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG 341
VTL N LSG + + L + + GN+ + G
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR------------------------ISG 163
Query: 342 SIPLWLSTQTEL-TFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNL 400
+IP + ++L T + +S N L G P + LNL V LS NML G +N
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 401 SVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSG 460
+ L++N+ + +L + +G S ++ L L +N G +P+ ++ + L L++S N+ G
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 461 EFPAFGS 467
E P G+
Sbjct: 283 EIPQGGN 289
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 14/221 (6%)
Query: 529 GEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIP---SSFGN 585
G P L + +T + G+I D LS + +L LD S N L G +P SS N
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 586 LQGM-IDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYS-----LMDLSNN 639
L G+ D I +P+ + L + S+ L+ K ++ +DLS N
Sbjct: 151 LVGITFDGNRISGAIPDSYG---SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 640 QLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAK 699
L G+ N L ++ G + L LDL +N + G +PQ +
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 700 LQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCG 740
L+ L SL +S N L G IP+ + R D YANN LCG
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQR-FDVSAYANNKCLCG 306
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 639 NQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFA 698
N L G IP + + G IP ++ L TLD S+N+LSG +P + +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 699 KLQQLTSLYLSNNKLSGRIPES 720
L L + N++SG IP+S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDS 168
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 37/235 (15%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
+ P+ + L+ + ++ N + P ANLT LT L L +N + P L NL L
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
L+LS+N I S ++GL +L+QL N + P + NLT L +L + NK S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD- 187
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
+S+L +L LE+L N +S P +DIGTLA N+T L
Sbjct: 188 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 245
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
L+NN ++ P + +TKL L+L +N +S IS L L + +L L N+L+
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 296
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 24/275 (8%)
Query: 238 LQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEIST 297
LQ + L + + + L N+T + SNN LT P ++N+TKLV + +++N ++ T
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--IT 101
Query: 298 WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLD 357
L +L + L L N++ D + + ELS + S + LS T L L
Sbjct: 102 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLS 157
Query: 358 LSENELEGTYP----QWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGE 413
S N++ P L L++ + +SD + L NL L+ + N S
Sbjct: 158 FSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-------TNLESLIATNNQISDI 210
Query: 414 LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGH 473
P +G T++ L L+ N +++++ L LDL+NN S P G L
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLT-E 265
Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLP 508
+ + +N+ S P + + L L+EN+ P
Sbjct: 266 LKLGANQISNISPLAGLTALTNLELNENQLEDISP 300
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 37/235 (15%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
+ P+ + L+ + ++ N + P ANLT LT L L +N + P L NL L
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
L+LS+N I S ++GL +L+QL N + P + NLT L +L + NK S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD- 187
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
+S+L +L LE+L N +S P +DIGTLA N+T L
Sbjct: 188 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 245
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
L+NN ++ P + +TKL L+L +N +S IS L L + +L L N+L+
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 296
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 24/275 (8%)
Query: 238 LQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEIST 297
LQ + L + + + L N+T + SNN LT P ++N+TKLV + +++N ++ T
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--IT 101
Query: 298 WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLD 357
L +L + L L N++ D + + ELS + S + LS T L L
Sbjct: 102 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLS 157
Query: 358 LSENELEGTYP----QWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGE 413
S N++ P L L++ + +SD + L NL L+ + N S
Sbjct: 158 FSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-------TNLESLIATNNQISDI 210
Query: 414 LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGH 473
P +G T++ L L+ N +++++ L LDL+NN S P G L
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLT-E 265
Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLP 508
+ + +N+ S P + + L L+EN+ P
Sbjct: 266 LKLGANQISNISPLAGLTALTNLELNENQLEDISP 300
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 37/235 (15%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
+ P+ + L+ + ++ N + P ANLT LT L L +N + P L NL L
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
L+LS+N I S ++GL +L+QL N + P + NLT L +L + NK S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD- 187
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
+S+L +L LE+L N +S P +DIGTLA N+T L
Sbjct: 188 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 245
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
L+NN ++ P + +TKL L+L +N +S IS L L + +L L N+L+
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 296
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 24/275 (8%)
Query: 238 LQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEIST 297
LQ + L + + + L N+T + SNN LT P ++N+TKLV + +++N ++ T
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--IT 101
Query: 298 WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLD 357
L +L + L L N++ D + + ELS + S + LS T L L+
Sbjct: 102 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLN 157
Query: 358 LSENELEGTYP----QWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGE 413
S N++ P L L++ + +SD + L NL L+ + N S
Sbjct: 158 FSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-------TNLESLIATNNQISDI 210
Query: 414 LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGH 473
P +G T++ L L+ N +++++ L LDL+NN S P G L
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLT-E 265
Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLP 508
+ + +N+ S P + + L L+EN+ P
Sbjct: 266 LKLGANQISNISPLAGLTALTNLELNENQLEDISP 300
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 13/241 (5%)
Query: 150 SIPSQLFN-LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQIPAEIGNLT 207
+P+ F R L L L +N + ++ GL L+QL L DN ++ PA L
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 208 NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED-IGTLANITILALSNNA 266
LH L L + P L L+ L LQ N+L +P+D L N+T L L N
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNR 164
Query: 267 LTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK 326
++ ++ R + L L L N ++ DL + +LYL N L ++ P
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224
Query: 327 CMLTELSLRS----CSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILS 382
L L L C R PLW Q S +E+ + PQ L+ +L + +
Sbjct: 225 RALQYLRLNDNPWVCDCRAR-PLWAWLQK----FRGSSSEVPCSLPQRLAGRDLKRLAAN 279
Query: 383 D 383
D
Sbjct: 280 D 280
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 6/214 (2%)
Query: 100 SVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN-NLNGSIPSQLFNL 158
S V A FR +T+ ++++ + F L L LDL DN L P+ L
Sbjct: 45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104
Query: 159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNK 218
L L L ++ GL L+ L L DN +Q +L NL L L N+
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164
Query: 219 FSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNM 278
S + L L+ L L +N ++ P L + L L N L+ +++ +
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224
Query: 279 TKLVTLRLDSN-----VLSGEISTWLFDLQGMKS 307
L LRL+ N + + WL +G S
Sbjct: 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 628 LAIYSLMDLSNN-QLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSH 686
LA+ +DLS+N QL P LQ P F L L+ L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 687 NSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
N+L TF L LT L+L N++S +PE
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISS-VPE 170
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 13/241 (5%)
Query: 150 SIPSQLFN-LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQIPAEIGNLT 207
+P+ F R L L L +N + ++ GL L+QL L DN ++ PA L
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 208 NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED-IGTLANITILALSNNA 266
LH L L + P L L+ L LQ N+L +P+D L N+T L L N
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNR 163
Query: 267 LTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK 326
++ ++ R + L L L N ++ DL + +LYL N L ++ P
Sbjct: 164 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 223
Query: 327 CMLTELSLRS----CSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILS 382
L L L C R PLW Q S +E+ + PQ L+ +L + +
Sbjct: 224 RALQYLRLNDNPWVCDCRAR-PLWAWLQK----FRGSSSEVPCSLPQRLAGRDLKRLAAN 278
Query: 383 D 383
D
Sbjct: 279 D 279
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 6/214 (2%)
Query: 100 SVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN-NLNGSIPSQLFNL 158
S V A FR +T+ ++++ + F L L LDL DN L P+ L
Sbjct: 44 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 103
Query: 159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNK 218
L L L ++ GL L+ L L DN +Q +L NL L L N+
Sbjct: 104 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 163
Query: 219 FSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNM 278
S + L L+ L L +N ++ P L + L L N L+ +++ +
Sbjct: 164 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 223
Query: 279 TKLVTLRLDSN-----VLSGEISTWLFDLQGMKS 307
L LRL+ N + + WL +G S
Sbjct: 224 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 257
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 628 LAIYSLMDLSNN-QLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSH 686
LA+ +DLS+N QL P LQ P F L L+ L L
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 687 NSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
N+L TF L LT L+L N++S +PE
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISS-VPE 169
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
+ P+ + L+ + ++ N + P ANLT LT L L +N + P L NL L
Sbjct: 82 ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 136
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
L+LS+N I S ++GL +L+QL + + + + NLT L +L + NK S
Sbjct: 137 RLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSD- 190
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
+S+L +L LE+L N +S P +DIGTLA N+T L
Sbjct: 191 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 248
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
L+NN ++ P + +TKL L+L +N +S IS L L + +L L N+L+
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQLE 299
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
+ P+ + L+ + ++ N + P ANLT LT L L +N + P L NL L
Sbjct: 83 ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
L+LS+N I S ++GL +L+QL + + + + NLT L +L + NK S
Sbjct: 138 RLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSD- 191
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
+S+L +L LE+L N +S P +DIGTLA N+T L
Sbjct: 192 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 249
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
L+NN ++ P + +TKL L+L +N +S IS L L + +L L N+L+
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 300
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
+ P+ + L+ + ++ N + P ANLT LT L L +N + P L NL L
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
L+LS+N I S ++GL +L+QL + + + + NLT L +L + NK S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLK---PLANLTTLERLDISSNKVSD- 186
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
+S+L +L LE+L N +S P +DIGTLA N+T L
Sbjct: 187 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 244
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
L+NN ++ P + +TKL L+L +N +S IS L L + +L L N+L+
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 295
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
+ P+ + L+ + ++ N + P ANLT LT L L +N + P L NL L
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
L+LS+N I S ++GL +L+QL + + + + NLT L +L + NK S
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLK---PLANLTTLERLDISSNKVSD- 186
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
+S+L +L LE+L N +S P +DIGTLA N+T L
Sbjct: 187 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 244
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
L+NN ++ P + +TKL L+L +N +S IS L L + +L L N+L+
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 295
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 6/177 (3%)
Query: 140 LDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQ 198
LDL+ N L+ S+PS+ F+ L L L L+ N ++ + LKNL+ L + DN +Q
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANI 257
L NL +L L +N+ P L KL L L N L +P+ + L ++
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSL 159
Query: 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
L L NN L + +T+L TL+LD+N L + FD L+ +K L L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 21/177 (11%)
Query: 544 LNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIF 603
L+L++ L + LT L++L L N+N L +P+ G + + + ++ T ++
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYL-NDNKLQTLPA--GIFKELKNLETLWVTDNKLQ 98
Query: 604 SFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPXXXXXXXXXXXXXXXYN 663
+ P+ + D +VN + + L NQL P YN
Sbjct: 99 ALPIGVFDQLVN---------------LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 664 QLQGNIPSTFGNLEILETLDLSHNSLSGKIPQ-TFAKLQQLTSLYLSNNKLSGRIPE 719
+LQ F L L+ L L +N L ++P+ F KL +L +L L NN+L R+PE
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPE 198
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 30/156 (19%)
Query: 164 LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGG 222
LDL +N + S L L+ L L+DN +Q +PA I L NL L + NK
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA- 99
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKL 281
+P+ + QL L L L RN L P +L +T L+L N L ++P+ +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV------ 152
Query: 282 VTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNKLK 316
FD L +K L L N+LK
Sbjct: 153 ------------------FDKLTSLKELRLYNNQLK 170
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 247 IPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMK 306
IP +I A+ L L +N L+ ++ +TKL L L+ N L + +L+ ++
Sbjct: 31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 307 SLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELE 364
+L++ NKL+ L EL L ++ P + T+LT+L L NEL+
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 101 VVLAPIF-RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NL 158
+L +F L L L+ N + ++ F LT L L+L N L GSI S++F NL
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENL 346
Query: 159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNK 218
LE LDLS N I GL NLK+L LD N ++ LT+L K+ L N
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406
Query: 219 FSGGIP 224
+ P
Sbjct: 407 WDCSCP 412
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 88/199 (44%), Gaps = 18/199 (9%)
Query: 107 FRIRSLMTLDLSYNSMQGEVPGTGFANL--TRLTYLDLKDNNLNGSIPSQL-------FN 157
F+ S+ TLDLS N + + F + T++ L L ++ GS F
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 158 LRYLEF-----LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKL 212
+ LE DLS + I L S + +L+QL L N I LT+L KL
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 213 SLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAI 271
+L QN F G I + + L KLE LDL N + + L N+ LAL N L ++
Sbjct: 329 NLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SV 386
Query: 272 PQSIRN-MTKLVTLRLDSN 289
P I + +T L + L +N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 138/331 (41%), Gaps = 62/331 (18%)
Query: 160 YLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
++ ++DLS N+I + + L++L+ L ++ Q P L +R N F
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLK-----VEQQTPG----------LVIRNNTF 75
Query: 220 SGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQS--IRN 277
G L +L+L + L L+ + +G LAN+ +L L+ L GA+ +
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 278 MTKLVTLRL-DSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCML------- 329
+T L L L D+N+ + +++ +++ L L NK+K SI + +L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-----SICEEDLLNFQGKHF 182
Query: 330 TELSLRSCSVRGSIPLWLSTQ--------TELTFLDLSENELEGTYPQWLSELNLGT--- 378
T L L S +++ WL + T +T LDLS N + + + + GT
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242
Query: 379 -VILSDNMLTGS-------LPPPLF-----ESRNLSVLVLSRNNFSGELPETIGQSTSVM 425
+ILS++ GS P F E+ + LS++ L T +
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302
Query: 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNN 456
L L+ N + + + LL L+LS N
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 109 IRSLMTLDLSYNSMQGEV-PGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDL 166
+ +L L L+ ++ G V G F LT L L L+DNN+ P+ F N+R LDL
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 167 SANAIE 172
+ N ++
Sbjct: 162 TFNKVK 167
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 667 GNIPST-FGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
G+I S F NL+ LE LDLS+N + Q+F L L L L N+L +P+
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 99/259 (38%), Gaps = 26/259 (10%)
Query: 126 VPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA-IEGKLSSRVAGLKN 184
VP F + LT L L N L G + L LE LDLS NA + + GL +
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244
L L LD +Q P L L L L+ N + L L L L N +
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 245 GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG 304
L ++ L L N + P + R++ +L+TL L +N LS + L L+
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRS 225
Query: 305 MKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELE 364
++ L L NDN + C R PLW Q S +E+
Sbjct: 226 LQYLRL-------NDNPWV-------------CDCRAR-PLWAWLQK----FRGSSSEVP 260
Query: 365 GTYPQWLSELNLGTVILSD 383
PQ L+ +L + SD
Sbjct: 261 CNLPQRLAGRDLKRLAASD 279
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 85/216 (39%), Gaps = 7/216 (3%)
Query: 98 VTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN-NLNGSIPSQLF 156
++ V A R+L L L N++ G + F LT L LDL DN L P+
Sbjct: 43 ISYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFR 101
Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
L +L L L ++ GL L+ L L DN +Q +L NL L L
Sbjct: 102 GLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHG 161
Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIR 276
N+ + L L+ L L +N ++ P L + L L N L+ + +
Sbjct: 162 NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLV 221
Query: 277 NMTKLVTLRLDSN-----VLSGEISTWLFDLQGMKS 307
+ L LRL+ N + + WL +G S
Sbjct: 222 PLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 257
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 1/131 (0%)
Query: 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS-LS 244
+++ L N I A + NL L L N +G + L LE LDL N+ L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 245 GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG 304
P L ++ L L L P R + L L L N L DL
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 305 MKSLYLGGNKL 315
+ L+L GN++
Sbjct: 154 LTHLFLHGNRI 164
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 670 PSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQ 722
P F L L+ L L N+L TF L LT L+L N RIP P+
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN----RIPSVPE 169
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 95/238 (39%), Gaps = 26/238 (10%)
Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG 221
LDL N I+ A +L++L L++N++ P NL NL L LR N+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK- 93
Query: 222 GIPLSLLQ-LRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTK 280
IPL + L L LD+ N + + L N+ L + +N L ++ +
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 281 LVTLRLDSNVLSGEISTWLFDLQGMKSL---YLGGNKLK-----------------WNDN 320
L L L+ L+ + L L G+ L +L N ++ W
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 321 VSIVPKCM----LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL 374
++ P C+ LT LS+ C++ L + L FL+LS N + L EL
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 9/225 (4%)
Query: 95 DSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPG--TGFANLTRLTYLDLKDNNLNGSIP 152
++IV++V + +L TL L N ++ G TG +NLT+L + K L +
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124
Query: 153 SQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD-NLIQGQIPAE-IGNLTNLH 210
L+NL+ LE D I + S GL +L+QL L+ NL IP E + +L L
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFS---GLNSLEQLTLEKCNLT--SIPTEALSHLHGLI 179
Query: 211 KLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGA 270
L LR + S +L +L+ L++ + + N+T L++++ LT
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239
Query: 271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKL 315
++R++ L L L N +S + L +L ++ + L G +L
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 85 GLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKD 144
GL+L +L +T+V + + L L+LSYN + + G+ L RL + L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVG 281
Query: 145 NNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN 193
L P L YL L++S N + S + NL+ LILD N
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 22/262 (8%)
Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
+LR ++ DL + L A L L +N I + NL NLH L L
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIR 276
NK S P + L KLE L L +N L E+PE + + L + N +T
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 277 NMTKLVTLRLDSNVL-SGEISTWLFDLQGMKSLYLGGNKLKWND-NVSIVPKCM---LTE 331
+ +++ + L +N L S I F QGMK L + ++ D N++ +P+ + LTE
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAF--QGMKKL----SYIRIADTNITTIPQGLPPSLTE 196
Query: 332 LSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSL 390
L L + L L L LS N + L+ +L + L++N L +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255
Query: 391 PPPLFESRNLSVLVLSRNNFSG 412
P L + + + V+ L NN S
Sbjct: 256 PGGLADHKYIQVVYLHNNNISA 277
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 673 FGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
F NL+ L TL L +N +S P FA L +L LYLS N+L +PE
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK 118
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 22/262 (8%)
Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
+LR ++ DL + L A L L +N I + NL NLH L L
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIR 276
NK S P + L KLE L L +N L E+PE + + L + N +T
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 277 NMTKLVTLRLDSNVL-SGEISTWLFDLQGMKSLYLGGNKLKWND-NVSIVPKCM---LTE 331
+ +++ + L +N L S I F QGMK L + ++ D N++ +P+ + LTE
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAF--QGMKKL----SYIRIADTNITTIPQGLPPSLTE 196
Query: 332 LSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSL 390
L L + L L L LS N + L+ +L + L++N L +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255
Query: 391 PPPLFESRNLSVLVLSRNNFSG 412
P L + + + V+ L NN S
Sbjct: 256 PGGLADHKYIQVVYLHNNNISA 277
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 673 FGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
F NL+ L TL L +N +S P FA L +L LYLS N+L +PE
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK 118
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEG 173
LDL NS++ +P F LT LT L L N L S+P+ +FN L L +L+LS N ++
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 174 KLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
+ L LK+L L+ N +Q LT L L L QN+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 14/216 (6%)
Query: 105 PIFRIRSLMTLDLSYNSMQGEVPGTGFA--NLTRLTYLDLKDNNLN--GSIPSQLFNLRY 160
P +++SL L ++ S +G G F+ +L L +LDL N L+ G F
Sbjct: 320 PTLKLKSLKRL--TFTSNKG---GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 161 LEFLDLSANAIEGKLSSRVAGLKNLKQL-ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
L++LDLS N + +SS GL+ L+ L NL Q + +L NL L +
Sbjct: 375 LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 220 SGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT-LANITILALSNNALTGAIPQSIRNM 278
L LE L + NS DI T L N+T L LS L P + ++
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 279 TKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
+ L L + SN L + +FD L ++ ++L N
Sbjct: 494 SSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTN 528
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L F+ L+ LDLS I+ L +L LIL N IQ
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANIT 258
L++L KL + + + L+ L+ L++ N + S ++PE L N+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 259 ILALSNNALTGAIPQSIRNMTKL 281
L LS+N + +R + ++
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 86 LDLNNLFPLD--SIVTSVVLAPIFR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDL 142
L L NL LD T V IF + SL L ++ NS Q F L LT+LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 143 KDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN 193
L P+ +L L+ L++++N ++ L +L+++ L N
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 93/248 (37%), Gaps = 53/248 (21%)
Query: 197 GQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN 256
GQ P L +L +L+ NK GG S + L LE LDL RN LS
Sbjct: 317 GQFPTL--KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLS------------ 360
Query: 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
G QS T L L L N + S +L L+ ++ L + LK
Sbjct: 361 ----------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLK 409
Query: 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN- 375
S+ LSLR+ L +LD+S + + L+
Sbjct: 410 QMSEFSVF-------LSLRN----------------LIYLDISHTHTRVAFNGIFNGLSS 446
Query: 376 LGTVILSDNMLTGSLPPPLF-ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
L + ++ N + P +F E RNL+ L LS+ P +S+ VL ++SN
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 435 SGHVPKSI 442
VP I
Sbjct: 507 KS-VPDGI 513
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 674 GNLEILETLDLSHNSL-SGKIPQTFAKLQQLTSLYLSNNKL 713
G+L+ L+ L+++HN + S K+P+ F+ L L L LS+NK+
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L L +++ + S+ PI +++L L++++N +Q F+NLT L +LDL N +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Query: 107 FR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFL 164
FR + L L+L YN +Q G F +LT L L L +N L S+P +F+ L L+ L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 165 DLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP 224
L N ++ S L LK+L L+ N +Q LTNL LSL N+
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 225 LSLLQLRKLETLDL 238
+ +L KL+T+ L
Sbjct: 173 GAFDRLGKLQTITL 186
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
YNQLQ F +L L TL L++N L+ F L QL LYL N+L
Sbjct: 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 104 APIFR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYL 161
A +F + L TL L+ N + +P F +LT+L L L N L S+PS +F+ L L
Sbjct: 76 AGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKL 133
Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
+ L L+ N ++ + L NL+ L L N +Q L L ++L N+F
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Query: 107 FR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFL 164
FR + L L+L YN +Q G F +LT L L L +N L S+P +F+ L L+ L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 165 DLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP 224
L N ++ S L LK+L L+ N +Q LTNL LSL N+
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 225 LSLLQLRKLETLDL 238
+ +L KL+T+ L
Sbjct: 173 GAFDRLGKLQTITL 186
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
YNQLQ F +L L TL L++N L+ F L QL LYL N+L
Sbjct: 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 104 APIFR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYL 161
A +F + L TL L+ N + +P F +LT+L L L N L S+PS +F+ L L
Sbjct: 76 AGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKL 133
Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
+ L L+ N ++ + L NL+ L L N +Q L L ++L N+F
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 117/284 (41%), Gaps = 36/284 (12%)
Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK 174
L+ S+N + + T F+ L LT+LDL + + L+ L L+AN +
Sbjct: 38 LEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96
Query: 175 LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-----GIPLSLLQ 229
+ ++G K LK L I + N L L L N S G P
Sbjct: 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT---- 152
Query: 230 LRKLETLDLQRNSLSGEIPEDIGTLANITILA--LSNNALTGAIPQSIRNMTKLVTLRLD 287
KL+ LD Q N++ ED+ +L T L+ L+ N + G P + D
Sbjct: 153 -EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-----------FD 200
Query: 288 SNVLS----GEISTWLFDLQGMK-----SLYLGGNKLKWNDNVSIVPKCMLTELSLRSCS 338
S V G L +G+K SL+LG + ++++S L E+S+ S +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260
Query: 339 VRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILS 382
++ +S+ T F L E +L T+ LSEL G V LS
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATH---LSELPSGLVGLS 301
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 128/290 (44%), Gaps = 43/290 (14%)
Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
L+ LDL LS E+P + L+ + L LS N S N L L + N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 293 GEIST-WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELS-LRSCSVRGSIPLWLSTQ 350
E+ T L +L+ ++ L L + ++ +D ++ L LS L+S ++ + PL L T+
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNL----QLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 351 T-----ELTFLDLSENELEGTYPQW-LSELNLGTVI-LSDNMLTGSLPPPLFESRNLSVL 403
+L LDL+ L+ Q L+L V+ LS ++L S
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-------------- 440
Query: 404 VLSRNNFSGELPETIGQSTSVMVLMLSSNNF-SGHVPK--SISNIYRLLVLDLSNNSFSG 460
S F G LP ++ L L N+F G++ K S+ + RL +L LS S
Sbjct: 441 --SEQLFDG-LP-------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490
Query: 461 -EFPAFGSDSLVGHVDISSNRF-SGEVPSSFGVTILMLSLSENKFSGQLP 508
+ AF S ++ HVD+S NR S + + + + L+L+ N S LP
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILP 540
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 247 IPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGM 305
+P+++ ++T++ LSNN ++ QS NMT+L+TL L N L I FD L+ +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 306 KSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346
+ L L GN ++S+VP+ +LS S G+ PL+
Sbjct: 105 RLLSLHGN------DISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 144 DNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI 203
D N +P +L N ++L +DLS N I + + + L LIL N ++ P
Sbjct: 39 DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 204 GNLTNLHKLSLRQNKFS 220
L +L LSL N S
Sbjct: 99 DGLKSLRLLSLHGNDIS 115
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 669 IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
+P N + L +DLS+N +S Q+F+ + QL +L LS N+L P +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 396 ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN 455
E L +V N LP+ I + V L L N F+ VPK +SN L ++DLSN
Sbjct: 7 ECTCLDTVVRCSNKGLKVLPKGIPRD--VTELYLDGNQFT-LVPKELSNYKHLTLIDLSN 63
Query: 456 NSFSG-EFPAFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFS 504
N S +F + + + + +S NR P +F ++ +LSL N S
Sbjct: 64 NRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 596 LPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIY---SLMDLSNNQLSGEIPXXXXXX 652
L LP+ P ++ +L ++ ++ L K L+ Y +L+DLSNN++S
Sbjct: 22 LKVLPK--GIPRDVTELYLD--GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77
Query: 653 XXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNK 712
YN+L+ P TF L+ L L L N +S F L L+ L + N
Sbjct: 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137
Query: 713 L 713
L
Sbjct: 138 L 138
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNL 400
+P LS LT +DLS N + Q S + L T+ILS N L +PP F+ ++L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSL 104
Query: 401 SVLVLSRNNFS 411
+L L N+ S
Sbjct: 105 RLLSLHGNDIS 115
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
N L++LDLS IE GL +L LIL N IQ P LT+L L +
Sbjct: 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113
Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANITILALSNNAL 267
K + + QL L+ L++ N + S ++P L N+ + LS N +
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 26/195 (13%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L NL +++ + S+ PI ++ +L L++++N + F+NLT L ++DL N +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
Query: 148 NGSIPSQLFNLRYLEF----------LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG 197
Q + L+F LD+S N I+ G+K L +L L N
Sbjct: 166 ------QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSS 218
Query: 198 QI-PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLE-----TLDLQRNSLSGEIPEDI 251
I + NL LH L +F L + + +E T+D R + + + +DI
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278
Query: 252 ---GTLANITILALS 263
LAN++ ++L+
Sbjct: 279 VKFHCLANVSAMSLA 293
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%)
Query: 109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA 168
+ SL TL ++ NS + FAN T LT+LDL L L L+ L++S
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQ 196
N + SS L +L L N I+
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
N L++LDLS IE GL +L LIL N IQ P LT+L L +
Sbjct: 49 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 108
Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANITILALSNNAL 267
K + + QL L+ L++ N + S ++P L N+ + LS N +
Sbjct: 109 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 26/195 (13%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L NL +++ + S+ PI ++ +L L++++N + F+NLT L ++DL N +
Sbjct: 101 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
Query: 148 NGSIPSQLFNLRYLEF----------LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG 197
Q + L+F LD+S N I+ G+K L +L L N
Sbjct: 161 ------QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSS 213
Query: 198 QI-PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLE-----TLDLQRNSLSGEIPEDI 251
I + NL LH L +F L + + +E T+D R + + + +DI
Sbjct: 214 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 273
Query: 252 ---GTLANITILALS 263
LAN++ ++L+
Sbjct: 274 VKFHCLANVSAMSLA 288
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%)
Query: 109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA 168
+ SL TL ++ NS + FAN T LT+LDL L L L+ L++S
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQ 196
N + SS L +L L N I+
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSAN 169
S L+L N +Q +P F LT+LT L L N + S+P +F+ L L L L N
Sbjct: 29 SATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86
Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP 224
++ + L LK+L LD N ++ LT+L K+ L N + P
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%)
Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
N+LQ F L L L LS N + F KL +LT LYL NKL
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 63 SSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSM 122
+SDCC ++ R + L+L+ PL + P L LD+++ +
Sbjct: 363 ASDCCNLQLKNLR------HLQYLNLSYNEPLGLEDQAFKECP-----QLELLDVAFTHL 411
Query: 123 QGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGL 182
+ P + F NL L L+L L+ S L L+ L L+L N+ + S+
Sbjct: 412 HVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKT--- 468
Query: 183 KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS 242
NL+Q EI L++ + LS+ Q F G LR + LDL NS
Sbjct: 469 ----------NLLQMVGSLEILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNS 510
Query: 243 LSGEIPEDIGTLANITILALSNN 265
L+G+ + + L + + SNN
Sbjct: 511 LTGDSMDALSHLKGLYLNMASNN 533
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 25/163 (15%)
Query: 109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLS 167
+R L L+LSYN G + F +L LD+ +L+ P F NL L L+LS
Sbjct: 374 LRHLQYLNLSYNEPLG-LEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Query: 168 ANAIEGKLSSRVAGLKNLKQLILDDNLIQ-GQIPAEIGNLTNLHKLSLRQNKFSGGIPLS 226
++ +AGL++L+ L L N Q G I TNL ++ G + +
Sbjct: 433 HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK-----TNLLQMV-------GSLEIL 480
Query: 227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG 269
+L L ++D Q + G L N+ L LS+N+LTG
Sbjct: 481 ILSSCNLLSIDQQ--AFHG--------LRNVNHLDLSHNSLTG 513
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 134/336 (39%), Gaps = 50/336 (14%)
Query: 125 EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN 184
++ + F TR+ LDL +LNG +PS + + L+ L L+AN+ + A +
Sbjct: 267 DLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPS 325
Query: 185 LKQLILDDNLIQGQIPAE-IGNLTNLHKLSLRQNKF--SGGIPLSLLQLRKLETLDLQRN 241
L+ L + N+ + + + L NL KL L + S L L LR L+ L+L N
Sbjct: 326 LRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYN 385
Query: 242 SLSGEIPEDIGTLANITILALSNNALTGAIPQS-IRNMTKLVTLRLDSNVLSGEISTWLF 300
G + + +L ++ L P S +N+ L L L +L L
Sbjct: 386 EPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLA 445
Query: 301 DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSE 360
LQ ++ L L GN + + SI +L + GS+ + + + L L + +
Sbjct: 446 GLQDLRHLNLQGNSFQ---DGSISKTNLL--------QMVGSLEILILSSCNL--LSIDQ 492
Query: 361 NELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQ 420
G RN++ L LS N+ +G+ + +
Sbjct: 493 QAFHGL-------------------------------RNVNHLDLSHNSLTGDSMDALSH 521
Query: 421 STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNN 456
+ L ++SNN P + + + +++LS+N
Sbjct: 522 LKG-LYLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 105/261 (40%), Gaps = 10/261 (3%)
Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
+E+++LQ++ S + L L+ L G +P I M L L L++N
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD 313
Query: 293 GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM-LTELSLRSCSVRGS--IPLWLST 349
++ LY+ GN K + + K L +L L + S L L
Sbjct: 314 QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKN 373
Query: 350 QTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNL-SVLVLSR 407
L +L+LS NE G Q E L + ++ L P F++ +L VL LS
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 408 NNFSGELPETIGQSTSVMVLMLSSNNFS-GHVPKS--ISNIYRLLVLDLSN-NSFSGEFP 463
+ + L L N+F G + K+ + + L +L LS+ N S +
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 464 AFGSDSLVGHVDISSNRFSGE 484
AF V H+D+S N +G+
Sbjct: 494 AFHGLRNVNHLDLSHNSLTGD 514
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 36/186 (19%)
Query: 130 GFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189
G L L L+LKDN + P L NL + L+LS N ++ S +AGL+++K L
Sbjct: 64 GIQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD 119
Query: 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPE 249
L I P + L+NL L L N+ + PL+
Sbjct: 120 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLA----------------------- 154
Query: 250 DIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLY 309
L N+ L++ NN + P + N++KL TLR D N +S +IS L L + ++
Sbjct: 155 ---GLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKIS-DIS-PLASLPNLIEVH 207
Query: 310 LGGNKL 315
L N++
Sbjct: 208 LKDNQI 213
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIP-SQLFNLRYL 161
++ I ++S+ TLDL+ + P G +NL L YLDL N + P + L NL+YL
Sbjct: 106 VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL-YLDL--NQITNISPLAGLTNLQYL 162
Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG 221
+ N + + +A L L L DDN I P + +L NL ++ L+ N+ S
Sbjct: 163 SIGNNQVNDL-----TPLANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISD 215
Query: 222 GIPLS 226
PL+
Sbjct: 216 VSPLA 220
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 80/192 (41%), Gaps = 12/192 (6%)
Query: 107 FRIRSLMTLDLSYNSMQGEVPGTG--FANLTRLTYLDLKDNNLNGSIPSQLFNLRYL--- 161
FR+ L + + E+P T FA L LT L SI S L LR L
Sbjct: 101 FRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRALPASIAS-LNRLRELSIR 158
Query: 162 ---EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNK 218
E +L S GL NL+ L L+ I+ +PA I NL NL L +R +
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSP 217
Query: 219 FSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNM 278
S P ++ L KLE LDL+ + P G A + L L + + +P I +
Sbjct: 218 LSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276
Query: 279 TKLVTLRLDSNV 290
T+L L L V
Sbjct: 277 TQLEKLDLRGCV 288
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 19/240 (7%)
Query: 151 IPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLH 210
P Q F L +L+ + A + +L L+ L L N ++ +PA I +L L
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLR 153
Query: 211 KLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGA 270
+LS+R +P L SGE L N+ L L + +
Sbjct: 154 ELSIRACPELTELPEPLAS-----------TDASGEH----QGLVNLQSLRLEWTGIR-S 197
Query: 271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLT 330
+P SI N+ L +L++ ++ LS + + L ++ L L G N + L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 331 ELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSL 390
L L+ CS ++PL + T+L LDL P +++L +IL L L
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L F+ L+ LDLS I+ L +L LIL N IQ
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANIT 258
L++L KL + + + L+ L+ L++ N + S ++PE L N+
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 259 ILALSNNALTGAIPQSIRNMTKL 281
L LS+N + +R + ++
Sbjct: 155 HLDLSSNKIQSIYCTDLRVLHQM 177
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L L L++ + S+ PI +++L L++++N +Q F+NLT L +LDL N +
Sbjct: 104 LQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 148 NGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN---LKQLILDDNLIQGQIPAEIG 204
+ L L + L+LS + ++ G LK+L LD N ++
Sbjct: 164 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 223
Query: 205 NLTNLHKLSLRQNKFSGGIP 224
LT+L K+ L N + P
Sbjct: 224 RLTSLQKIWLHTNPWDCSCP 243
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 674 GNLEILETLDLSHNSL-SGKIPQTFAKLQQLTSLYLSNNKL 713
G+L+ L+ L+++HN + S K+P+ F+ L L L LS+NK+
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L F+ L+ LDLS I+ L +L LIL N IQ
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANIT 258
L++L KL + + + L+ L+ L++ N + S ++PE L N+
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 259 ILALSNNALTGAIPQSIRNMTKL 281
L LS+N + +R + ++
Sbjct: 154 HLDLSSNKIQSIYCTDLRVLHQM 176
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L L +++ + S+ PI +++L L++++N +Q F+NLT L +LDL N +
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 148 NGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN---LKQLILDDNLIQGQIPAEIG 204
+ L L + L+LS + ++ G LK+L LD N ++
Sbjct: 163 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 222
Query: 205 NLTNLHKLSLRQNKFSGGIP 224
LT+L K+ L N + P
Sbjct: 223 RLTSLQKIWLHTNPWDCSCP 242
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 674 GNLEILETLDLSHNSL-SGKIPQTFAKLQQLTSLYLSNNKL 713
G+L+ L+ L+++HN + S K+P+ F+ L L L LS+NK+
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L F+ L+ LDLS I+ L +L LIL N IQ
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANIT 258
L++L KL + + + L+ L+ L++ N + S ++PE L N+
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 259 ILALSNNALTGAIPQSIRNMTKL 281
L LS+N + +R + ++
Sbjct: 155 HLDLSSNKIQSIYCTDLRVLHQM 177
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L L +++ + S+ PI +++L L++++N +Q F+NLT L +LDL N +
Sbjct: 104 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 148 NGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN---LKQLILDDNLIQGQIPAEIG 204
+ L L + L+LS + ++ G LK+L LD N ++
Sbjct: 164 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 223
Query: 205 NLTNLHKLSLRQNKFSGGIP 224
LT+L K+ L N + P
Sbjct: 224 RLTSLQKIWLHTNPWDCSCP 243
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 674 GNLEILETLDLSHNSL-SGKIPQTFAKLQQLTSLYLSNNKL 713
G+L+ L+ L+++HN + S K+P+ F+ L L L LS+NK+
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L F+ L+ LDLS I+ L +L LIL N IQ
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANIT 258
L++L KL + + + L+ L+ L++ N + S ++PE L N+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 259 ILALSNNALTGAIPQSIRNMTKL 281
L LS+N + +R + ++
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQM 175
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L L +++ + S+ PI +++L L++++N +Q F+NLT L +LDL N +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 148 NGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN---LKQLILDDNLIQGQIPAEIG 204
+ L L + L+LS + ++ G LK+L LD N ++
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221
Query: 205 NLTNLHKLSLRQNKFSGGIP 224
LT+L K+ L N + P
Sbjct: 222 RLTSLQKIWLHTNPWDCSCP 241
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 674 GNLEILETLDLSHNSL-SGKIPQTFAKLQQLTSLYLSNNKL 713
G+L+ L+ L+++HN + S K+P+ F+ L L L LS+NK+
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L F+ L+ LDLS I+ L +L LIL N IQ
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANIT 258
L++L KL + + + L+ L+ L++ N + S ++PE L N+
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 259 ILALSNNALTGAIPQSIRNMTKL 281
L LS+N + +R + ++
Sbjct: 154 HLDLSSNKIQSIYCTDLRVLHQM 176
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L L +++ + S+ PI +++L L++++N +Q F+NLT L +LDL N +
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 148 NGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN---LKQLILDDNLIQGQIPAEIG 204
+ L L + L+LS + ++ G LK+L LD N ++
Sbjct: 163 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 222
Query: 205 NLTNLHKLSLRQNKFSGGIP 224
LT+L K+ L N + P
Sbjct: 223 RLTSLQKIWLHTNPWDCSCP 242
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 674 GNLEILETLDLSHNSL-SGKIPQTFAKLQQLTSLYLSNNKL 713
G+L+ L+ L+++HN + S K+P+ F+ L L L LS+NK+
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF----NLRYLEFLDLSANA 170
LDLS+N++ LT L L L N+LN I S+ F NLRYL DLS+N
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYL---DLSSNH 99
Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL-- 228
+ + L+ L+ L+L +N I ++ L KL L QN+ S P+ L+
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKD 158
Query: 229 --QLRKLETLDLQRNSL 243
+L KL LDL N L
Sbjct: 159 GNKLPKLMLLDLSSNKL 175
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIP-SQLFNLRYL 161
++ I ++S+ TLDL+ + P G +NL L YLDL N + P + L NL+YL
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL-YLDL--NQITNISPLAGLTNLQYL 156
Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG 221
NA L + +A L L L DDN I P + +L NL ++ L+ N+ S
Sbjct: 157 SI----GNAQVSDL-TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209
Query: 222 GIPLS 226
PL+
Sbjct: 210 VSPLA 214
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 42/194 (21%)
Query: 128 GTGFANLTRLTYL------DLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAG 181
GTG + + YL +LKDN + P L NL + L+LS N + K S +AG
Sbjct: 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAG 105
Query: 182 LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN 241
L+++K L L I P + L+NL L L N+ + PL+
Sbjct: 106 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLA--------------- 148
Query: 242 SLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD 301
L N+ L++ N ++ P + N++KL TL+ D N +S +IS L
Sbjct: 149 -----------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DISP-LAS 193
Query: 302 LQGMKSLYLGGNKL 315
L + ++L N++
Sbjct: 194 LPNLIEVHLKNNQI 207
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L F+ L+ LDLS I+ L +L LIL N IQ
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANIT 258
L++L KL + + + L+ L+ L++ N + S ++PE L N+
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 259 ILALSNNALTGAIPQSIRNMTKL 281
L LS+N + +R + ++
Sbjct: 177 HLDLSSNKIQSIYCTDLRVLHQM 199
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 111 SLMTLDLSYN--SMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDL-S 167
SL LDLS N S +G + F ++ L YLDL N + ++ S L LE LD
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQH 429
Query: 168 ANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG-IPLS 226
+N + S L+NL L + + L++L L + N F +P
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 489
Query: 227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN 265
+LR L LDL + L P +L+++ +L +S+N
Sbjct: 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 127/316 (40%), Gaps = 73/316 (23%)
Query: 130 GFANLT----RLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEG-KLSSRVAGLK 183
G NLT RL YLD L+G I LFN L + L + IE K S G +
Sbjct: 277 GLCNLTIEEFRLAYLDYY---LDGII--DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 331
Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL 243
+L+ + N GQ P L +L +L+ NK GG S + L LE LDL RN L
Sbjct: 332 HLELV----NCKFGQFPT--LKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGL 383
Query: 244 SGE---IPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF 300
S + D GT++ + L LS N G I S SN L
Sbjct: 384 SFKGCCSQSDFGTIS-LKYLDLSFN---GVITMS-------------SNFLG-------- 418
Query: 301 DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSE 360
L+ ++ L + LK S+ LSLR+ L +LD+S
Sbjct: 419 -LEQLEHLDFQHSNLKQMSEFSVF-------LSLRN----------------LIYLDISH 454
Query: 361 NELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLF-ESRNLSVLVLSRNNFSGELPETI 418
+ + L+ L + ++ N + P +F E RNL+ L LS+ P
Sbjct: 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514
Query: 419 GQSTSVMVLMLSSNNF 434
+S+ VL +S NNF
Sbjct: 515 NSLSSLQVLNMSHNNF 530
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 86 LDLNNLFPLD--SIVTSVVLAPIFR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDL 142
L L NL LD T V IF + SL L ++ NS Q F L LT+LDL
Sbjct: 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 143 KDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAE 202
L P+ +L L+ L++S N + L +L+ L N I E
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561
Query: 203 IGNL-TNLHKLSLRQNKFS 220
+ + ++L L+L QN F+
Sbjct: 562 LQHFPSSLAFLNLTQNDFA 580
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 674 GNLEILETLDLSHNSL-SGKIPQTFAKLQQLTSLYLSNNKL 713
G+L+ L+ L+++HN + S K+P+ F+ L L L LS+NK+
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L L +++ + S+ PI +++L L++++N +Q F+NLT L +LDL N +
Sbjct: 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Query: 111 SLMTLDLSYN--SMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDL-S 167
SL LDLS N S +G + F T L YLDL N + ++ S L LE LD
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQH 405
Query: 168 ANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG-IPLS 226
+N + S L+NL L + + L++L L + N F +P
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN 265
+LR L LDL + L P +L+++ +L +S+N
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L F+ L+ LDLS I+ L +L LIL N IQ
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLANIT 258
L++L KL + + + L+ L+ L++ N + S ++PE L N+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 259 ILALSNNALTGAIPQSIRNMTKL 281
L LS+N + +R + ++
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQM 175
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 91/240 (37%), Gaps = 52/240 (21%)
Query: 197 GQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN 256
GQ P L +L +L+ NK GG S + L LE LDL RN LS
Sbjct: 317 GQFPT--LKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLS------------ 360
Query: 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
G QS T L L L N + S +L L+ ++ L + LK
Sbjct: 361 ----------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLK 409
Query: 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN- 375
S+ LSLR+ L +LD+S + + L+
Sbjct: 410 QMSEFSVF-------LSLRN----------------LIYLDISHTHTRVAFNGIFNGLSS 446
Query: 376 LGTVILSDNMLTGSLPPPLF-ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
L + ++ N + P +F E RNL+ L LS+ P +S+ VL +S NNF
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 109/302 (36%), Gaps = 60/302 (19%)
Query: 29 QKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSS--DCCRWEMVRCRSRGPSQEVTGL 86
Q A LE LVLG+ + G LE ++ S+ C + R + L
Sbjct: 222 QGLAGLEVHRLVLGEFRNE-------GNLEKFDKSALEGLCNLTIEEFR-------LAYL 267
Query: 87 D--LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYN----------SMQGEVPGTGFANL 134
D L+++ L + +T+V + + D SYN G+ P +L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK-------------------- 174
RLT+ K N + +L LEFLDLS N + K
Sbjct: 328 KRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 175 -----LSSRVAGLKNLKQL-ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL 228
+SS GL+ L+ L NL Q + +L NL L +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 229 QLRKLETLDLQRNSLSGEIPEDIGT-LANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
L LE L + NS DI T L N+T L LS L P + +++ L L +
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 288 SN 289
N
Sbjct: 503 HN 504
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 86 LDLNNLFPLD--SIVTSVVLAPIFR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDL 142
L L NL LD T V IF + SL L ++ NS Q F L LT+LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 143 KDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAE 202
L P+ +L L+ L++S N + L +L+ L N I E
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 203 IGNL-TNLHKLSLRQNKFS 220
+ + ++L L+L QN F+
Sbjct: 538 LQHFPSSLAFLNLTQNDFA 556
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 674 GNLEILETLDLSHNSL-SGKIPQTFAKLQQLTSLYLSNNKL 713
G+L+ L+ L+++HN + S K+P+ F+ L L L LS+NK+
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
L L +++ + S+ PI +++L L++++N +Q F+NLT L +LDL N +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDL 166
++ +L L L N +Q +P F LT LTYL L N L S+P +F+ L L LDL
Sbjct: 107 KLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDL 164
Query: 167 SANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
N ++ L LKQL L+DN ++ LT+L + L N +
Sbjct: 165 DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 129 TGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEGKLSSRVAGLKNLKQ 187
+ LT LTYL L N L S+P+ +F+ L L+ L L N ++ L NL
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG---GIPLSLLQLRKLETLDLQRNSLS 244
L L N +Q LTNL +L L N+ G+ L QL++L D Q S+
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 245 GEIPEDIGTLANITIL 260
+ + + +L +I +L
Sbjct: 198 DGVFDRLTSLTHIWLL 213
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYL 161
++ + + +L L L+ N +Q +P F LT L L L +N L S+P +F+ L L
Sbjct: 78 ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNL 135
Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS 220
+L L N ++ L NL +L LD+N +Q LT L +LSL N+
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
+NQLQ F L L LDL +N L F KL QL L L++N+L +P+
Sbjct: 142 HNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPD 198
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 64/162 (39%), Gaps = 33/162 (20%)
Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
N+RYL L N + S + L NL LIL N +Q LTNL +L L +
Sbjct: 64 NVRYLA---LGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSI 275
N+ +P+ + L N+T L L +N L
Sbjct: 119 NQLQS-------------------------LPDGVFDKLTNLTYLYLYHNQLQSLPKGVF 153
Query: 276 RNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNKLK 316
+T L L LD+N L + +FD L +K L L N+LK
Sbjct: 154 DKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLK 194
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
NQLQ F L L L L HN L F KL LT L L NN+L +PE
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPE 174
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDL 166
++ +L L L N +Q +P F LT LTYL+L N L S+P +F+ L L LDL
Sbjct: 107 KLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDL 164
Query: 167 SANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP 224
S N ++ L LK L L N ++ LT+L + L N + P
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 130 GFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189
G L + YL L N L+ S L L L +L L+ N ++ + L NLK+L+
Sbjct: 58 GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL-QLRKLETLDLQRNSLSGEIP 248
L +N +Q LTNL L+L N+ +P + +L L LDL N L +P
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LP 173
Query: 249 EDI-GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289
E + L + L L N L +T L + L N
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
N+RYL L N + S + L NL LIL N +Q LTNL +L L +
Sbjct: 64 NVRYLA---LGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSI 275
N+ +L L L+L N L +P+ + L N+T L LS N L ++P+ +
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGV 176
Query: 276 RN-MTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
+ +T+L LRL N L + +FD L ++ ++L N
Sbjct: 177 FDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
+NQLQ F L L LDLS+N L F KL QL L L N+L +P+
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD 198
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
NQLQ F L L L+L+HN L F KL LT L LS N+L +PE
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPE 174
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK 174
L+ S+N + + F+ L LT+LDL +N + L L L+ N +
Sbjct: 35 LEFSFNFLP-TIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFM 93
Query: 175 LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQN-----KFSGGIPLSLLQ 229
+ + G K+LK L L I + NL NL L L N KF P
Sbjct: 94 AETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFP----- 148
Query: 230 LRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA 266
R L+ LD Q N++ ED+ +L L+L+ N
Sbjct: 149 ARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNG 185
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 46/230 (20%)
Query: 108 RIRSLMTLDLSYNSMQGE-------------------------VPGTGFANLTRLTYLDL 142
++ +L TLDLS+N ++ + F +L LDL
Sbjct: 345 KLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDL 404
Query: 143 KDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL-----------IL 190
L+ + P F NL +L+ L+L+ ++ +AGL L+ L I
Sbjct: 405 AFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTIT 464
Query: 191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED 250
NL+Q E+ L++ LS+ Q F L K+ +DL NSL+ + +
Sbjct: 465 KTNLLQTVGSLEVLILSSCGLLSIDQQAFHS--------LGKMSHVDLSHNSLTCDSIDS 516
Query: 251 IGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF 300
+ L I L L+ N++ P+ + +++ T+ L N L S F
Sbjct: 517 LSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHF 565
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 675 NLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP 721
NL L+TL+LSHN G Q F + QL L L+ +L P+SP
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSP 417
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 86/217 (39%), Gaps = 30/217 (13%)
Query: 124 GEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLK 183
EVP + N TR YL+L++N++ +LR+LE L LS N + GL
Sbjct: 27 AEVPASIPVN-TR--YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ----LRKLETLDLQ 239
+L L L DN + L+ L +L LR N IP LR+L+ +L+
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELK 142
Query: 240 RNSLSGE---------------------IPEDIGTLANITILALSNNALTGAIPQSIRNM 278
R E IP ++ L + L LS N L P S + +
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 279 TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKL 315
T L L L ++ DL+ ++ L L N L
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 5/165 (3%)
Query: 79 PSQEVTGL-DLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRL 137
P+Q L L L+ ++ + S+ R+ SL LDL + F L L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG 197
YL+L NL IP+ L L LE L+LS N ++ GL +L++L L +
Sbjct: 159 RYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRN 241
+L +L +L+L N +P L L +LE + L N
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHN 260
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%)
Query: 126 VPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEG-KLSSRVAGLKN 184
+ G F +L L +LDL DN+L+ S L L++L+L N + ++S L N
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244
L+ L IGN+ + +R+ F+G L+ L+++ L + Q SL
Sbjct: 125 LQTL-------------RIGNVETFSE--IRRIDFAGLTSLNELEIKALSLRNYQSQSL- 168
Query: 245 GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG 304
+ I + ++T L LS +A I I + + + LR D+N+ + S D
Sbjct: 169 ----KSIRDIHHLT-LHLSESAFLLEIFADILSSVRYLELR-DTNLARFQFSPLPVDEVS 222
Query: 305 --MKSLYLGGNKL---KWNDNVSIVPKCM-LTELSLRSCSVRG 341
MK L G+ L +N+ + ++ + L+E+ C++ G
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 39/183 (21%)
Query: 157 NLRYLEFLDLSAN-AIEGKL--SSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS 213
+L+ LEFLDLS N +E L S+ +L+ L+L N
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-------------------H 372
Query: 214 LRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL---TGA 270
LR + +G I LL L+ L +LD+ RN+ +P+ + L LS+ +
Sbjct: 373 LRSMQKTGEI---LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC 428
Query: 271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLT 330
IPQ++ + +V + + ++ L ++ LY+ NKLK + S+ P ++
Sbjct: 429 IPQTLEVL----------DVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVM 478
Query: 331 ELS 333
++S
Sbjct: 479 KIS 481
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
+++LDL N ++ D+ AN+ +L L ++ + + ++ L L L N LS
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 293 GEISTWLFDLQGMKSLYLGGN 313
S+W L +K L L GN
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGN 108
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 86/217 (39%), Gaps = 30/217 (13%)
Query: 124 GEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLK 183
EVP + N TR YL+L++N++ +LR+LE L LS N + GL
Sbjct: 27 AEVPASIPVN-TR--YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ----LRKLETLDLQ 239
+L L L DN + L+ L +L LR N IP LR+L+ +L+
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELK 142
Query: 240 RNSLSGE---------------------IPEDIGTLANITILALSNNALTGAIPQSIRNM 278
R E IP ++ L + L LS N L P S + +
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 279 TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKL 315
T L L L ++ DL+ ++ L L N L
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 5/165 (3%)
Query: 79 PSQEVTGL-DLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRL 137
P+Q L L L+ ++ + S+ R+ SL LDL + F L L
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG 197
YL+L NL IP+ L L LE L+LS N ++ GL +L++L L +
Sbjct: 159 RYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRN 241
+L +L +L+L N +P L L +LE + L N
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHN 260
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%)
Query: 126 VPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEG-KLSSRVAGLKN 184
+ G F +L L +LDL DN+L+ S L L++L+L N + ++S L N
Sbjct: 91 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 150
Query: 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244
L+ L IGN+ + +R+ F+G L+ L+++ L + Q SL
Sbjct: 151 LQTL-------------RIGNVETFSE--IRRIDFAGLTSLNELEIKALSLRNYQSQSL- 194
Query: 245 GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG 304
+ I + ++T L LS +A I I + + + LR D+N+ + S D
Sbjct: 195 ----KSIRDIHHLT-LHLSESAFLLEIFADILSSVRYLELR-DTNLARFQFSPLPVDEVS 248
Query: 305 --MKSLYLGGNKL---KWNDNVSIVPKCM-LTELSLRSCSVRG 341
MK L G+ L +N+ + ++ + L+E+ C++ G
Sbjct: 249 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 291
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 39/183 (21%)
Query: 157 NLRYLEFLDLSAN-AIEGKL--SSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS 213
+L+ LEFLDLS N +E L S+ +L+ L+L N
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-------------------H 398
Query: 214 LRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL---TGA 270
LR + +G I LL L+ L +LD+ RN+ +P+ + L LS+ +
Sbjct: 399 LRSMQKTGEI---LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC 454
Query: 271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLT 330
IPQ++ + +V + + ++ L ++ LY+ NKLK + S+ P ++
Sbjct: 455 IPQTLEVL----------DVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVM 504
Query: 331 ELS 333
+++
Sbjct: 505 KIA 507
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
+++LDL N ++ D+ AN+ +L L ++ + + ++ L L L N LS
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 293 GEISTWLFDLQGMKSLYLGGN 313
S+W L +K L L GN
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGN 134
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 46/241 (19%)
Query: 160 YLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
++ ++DLS N+I + + L++L+ L ++ Q P L +R N F
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLK-----VEQQTPG----------LVIRNNTF 75
Query: 220 SGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQS--IRN 277
G L +L+L + L L+ + +G LAN+ +L L+ L GA+ +
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 278 MTKLVTLRL-DSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCML------- 329
+T L L L D+N+ + +++ +++ L L NK+K SI + +L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-----SICEEDLLNFQGKHF 182
Query: 330 TELSLRSCSVRGSIPLWLSTQ--------TELTFLDLSENELEGTYPQWLSELNLGTVIL 381
T L L S +++ WL + T +T LDLS N + + + + GT I
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242
Query: 382 S 382
S
Sbjct: 243 S 243
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 109 IRSLMTLDLSYNSMQGEV-PGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDL 166
+ +L L L+ ++ G V G F LT L L L+DNN+ P+ F N+R LDL
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 167 SANAIE 172
+ N ++
Sbjct: 162 TFNKVK 167
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 69 WEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPI-FRIRSLMTLDLSYNSMQGEVP 127
WE +C + + +T LDL+ +S+ A +I+SL+ L SYN M
Sbjct: 202 WE--KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI-LSNSYN-MGSSFG 257
Query: 128 GTGFANLTRLTY----------LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSS 177
T F + T+ DL + + + S + LE L L+ N I +
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Query: 178 RVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP 224
GL +LK+L LD N ++ LT+L K+ L N + P
Sbjct: 318 AFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 93/219 (42%), Gaps = 8/219 (3%)
Query: 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDL 166
+R L L LS N ++ G F L L L+L DN L +IP+ F L L+ L L
Sbjct: 86 HLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWL 143
Query: 167 SANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI-PAEIGNLTNLHKLSLRQNKFSGGIPL 225
N IE S + +L++L L + I L+NL L+L IP
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP- 201
Query: 226 SLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLR 285
+L L KL+ LDL N LS P L ++ L + + + + N+ LV +
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 286 LDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIV 324
L N L+ L ++ ++L N WN N I+
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHN--PWNCNCDIL 298
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 634 MDLSNNQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI 693
+DLS N LS P +Q+Q + F NL+ L ++L+HN+L+
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271
Query: 694 PQTFAKLQQLTSLYLSNN 711
F L L ++L +N
Sbjct: 272 HDLFTPLHHLERIHLHHN 289
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 187 QLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS--GGIPLSLLQLRKLETLDLQRNSLS 244
L +NL+ + G+LT L L L+ N+ I Q++ L+ LD+ +NS+S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 245 -GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQ 303
E D ++ L +S+N LT I + + K+ L L SN + I + L+
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV--LDLHSNKIKS-IPKQVVKLE 444
Query: 304 GMKSLYLGGNKLK 316
++ L + N+LK
Sbjct: 445 ALQELNVASNQLK 457
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 18/235 (7%)
Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDS 288
LR ++ DL ++ EI D T+L L NN ++ + + L L L +
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDT------TLLDLQNNDISELRKDDFKGLQHLYALVLVN 87
Query: 289 NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK--CMLTELSLRSCSVRGSIPLW 346
N +S L+ ++ LY+ N L V I P L EL + +R
Sbjct: 88 NKISKIHEKAFSPLRKLQKLYISKNHL-----VEIPPNLPSSLVELRIHDNRIRKVPKGV 142
Query: 347 LSTQTELTFLDLSENELE--GTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLV 404
S + +++ N LE G P L L + +S+ LTG +P L E+ L+ L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPET--LNELH 199
Query: 405 LSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFS 459
L N E + + + + L L N S+S + L L L NN S
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL 188
+ NLT L L L ++N++ P L NL L+L AN LS ++ L L
Sbjct: 104 SALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYL 160
Query: 189 ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIP 248
+ ++ ++ P I NLT+L+ LSL N+ PL+ L L N ++
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLA--SLTSLHYFTAYVNQIT---- 212
Query: 249 EDIGTLANIT---ILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGM 305
DI +AN T L + NN +T P + N+++L L + +N +S +I+ + DL +
Sbjct: 213 -DITPVANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINA-VKDLTKL 267
Query: 306 KSLYLGGNKL 315
K L +G N++
Sbjct: 268 KXLNVGSNQI 277
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
+ P+ L +L + N + P ANL++LT+L++ N + S + + +L L+
Sbjct: 214 ITPVANXTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQI--SDINAVKDLTKLK 268
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQL---ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
L++ +N I S ++ L NL QL L++N + + IG LTNL L L QN
Sbjct: 269 XLNVGSNQI-----SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Query: 220 SGGIPLSLLQLRKLETLDL 238
+ PL+ L K ++ D
Sbjct: 324 TDIRPLA--SLSKXDSADF 340
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 164 LDLSANAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
LDLS + L+SRV LK+LK L L N I L NL L+L N
Sbjct: 271 LDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG-----AIPQSIRN 277
+ L K+ +DLQ+N ++ + L + L L +NALT +IP +
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389
Query: 278 MTKLVTL 284
KLVTL
Sbjct: 390 GNKLVTL 396
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 175 LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSL---LQLR 231
+S+ + L +L L+ N + ++PAEI NL+NL L L N+ + +P L QL+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
Query: 232 KLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL 267
D ++ +P + G L N+ L + N L
Sbjct: 297 YFYFFD----NMVTTLPWEFGNLCNLQFLGVEGNPL 328
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L S+P L L LD+S N + + GL L++L L N ++
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
P + L KLSL N+ + +P LL L L+TL LQ NSL
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L S+P L L LD+S N + + GL L++L L N ++
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
P + L KLSL N+ + +P LL L L+TL LQ NSL
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L S+P L L LD+S N + + GL L++L L N ++
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
P + L KLSL N+ + +P LL L L+TL LQ NSL
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L S+P L L LD+S N + + GL L++L L N ++
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
P + L KLSL N+ + +P LL L L+TL LQ NSL
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L S+P L L LD+S N + + GL L++L L N ++
Sbjct: 83 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
P + L KLSL N + +P LL L L+TL LQ NSL
Sbjct: 142 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 95 DSIVTSVVLAPIFRIRSLMTLDLSYNSMQG-EVPGTGFANLTRLTYLDLKDNNLNGSIPS 153
++++ + LA + L L+L + +V GT L L LDL N L S+P
Sbjct: 40 ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LPVLGTLDLSHNQLQ-SLPL 94
Query: 154 QLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS 213
L L LD+S N + + GL L++L L N ++ P + L KLS
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 214 LRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
L N + +P LL L L+TL LQ NSL
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 679 LETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715
L +DLS+N L + F K+Q+L LY+SNN+L
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 26/212 (12%)
Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
++ L + +N+++ +P F N+ LT L L+ N+L S+P +F N L L +S
Sbjct: 93 HTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSN 150
Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL 228
N +E +L+ L L N LT++ LSL + F + +LL
Sbjct: 151 NNLERIEDDTFQATTSLQNLQLSSN-----------RLTHV-DLSLIPSLFHANVSYNLL 198
Query: 229 QLRKL----ETLDLQRNSLS-GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVT 283
+ E LD NS++ P ++ +TIL L +N LT + N LV
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDT--AWLLNYPGLVE 252
Query: 284 LRLDSNVLSGEISTWLFDLQGMKSLYLGGNKL 315
+ L N L + +Q ++ LY+ N+L
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L S+P L L LD+S N + + GL L++L L N ++
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
P + L KLSL N + +P LL L L+TL LQ NSL
Sbjct: 141 PGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 95 DSIVTSVVLAPIFRIRSLMTLDLSYNSMQG-EVPGTGFANLTRLTYLDLKDNNLNGSIPS 153
++++ + LA + L L+L + +V GT L L LDL N L S+P
Sbjct: 40 ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LPVLGTLDLSHNQLQ-SLPL 94
Query: 154 QLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS 213
L L LD+S N + + GL L++L L N ++ P + L KLS
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 214 LRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
L N + +P LL L L+TL LQ NSL
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 246 EIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGM 305
IP+D+ +NIT+L L++N L P + ++L L N +S L +
Sbjct: 18 HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLL 75
Query: 306 KSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEG 365
K L L N+L + + V LTEL L S S+ Q L LDLS N L
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Query: 366 T 366
T
Sbjct: 136 T 136
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 125 EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN 184
EVP G + TR YL+L +NN+ +L +LE L L N+I GL +
Sbjct: 68 EVP-QGIPSNTR--YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124
Query: 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDL 238
L L L DN + L+ L +L LR N + ++ L LDL
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLS 167
R+ SLM LDL + F L L YL+L N+ +P+ L L LE L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMS 226
Query: 168 ANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSL 227
N GL +LK+L + ++ + L +L +L+L N S +P L
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDL 285
Query: 228 LQ-LRKLETLDLQRN 241
LR L L L N
Sbjct: 286 FTPLRYLVELHLHHN 300
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
LDL N L S+P L L LD+S N + + GL L++L L N ++
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
P + L KLSL N + +P LL L L+TL LQ NSL
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 682 LDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
+DLS+N L + F K+Q+L LY+SNN+L
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 95 DSIVTSVVLAPIFRIRSLMTLDLSYNSMQG-EVPGTGFANLTRLTYLDLKDNNLNGSIPS 153
++++ + LA + L L+L + +V GT L L LDL N L S+P
Sbjct: 40 ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LPVLGTLDLSHNQLQ-SLPL 94
Query: 154 QLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS 213
L L LD+S N + + GL L++L L N ++ P + L KLS
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 214 LRQNKFSGGIPLSLLQ-LRKLETLDLQRNSL 243
L N + +P LL L L+TL LQ NSL
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEG 173
L L N + PG F +L L L L N L G++P +F+ L L LDL N +
Sbjct: 45 LYLHDNQITKLEPGV-FDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 174 KLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
S+ L +LK+L + N + ++P I LT+L L+L QN+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 27/125 (21%)
Query: 174 KLSSRVAGL-KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LR 231
+ +S AG+ N + L L DN I P +L NL +L L N+ G +P+ + L
Sbjct: 30 RHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 232 KLETLDLQRNSLS-----------------------GEIPEDIGTLANITILALSNNALT 268
+L LDL N L+ E+P I L ++T LAL N L
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Query: 269 GAIPQ 273
+IP
Sbjct: 149 -SIPH 152
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 114 TLDLSYNSM-QGEVPGTGFANLTRLTYLDLKDNNLNG-SIPSQLFNLRYLEFLDLSANAI 171
L LS NS+ + +P F L+ L L L N + LFN + LE+LD+S N +
Sbjct: 56 ALSLSQNSISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVSHNRL 112
Query: 172 EGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS--GGIPLSLLQ 229
+ +A L++L D +++ + E GNLT L L L KF +P++ L
Sbjct: 113 QNISCCPMASLRHLDLSFNDFDVL--PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 230 LRKLETLDLQRNSLSGEIPEDIGTLANITILAL 262
L + LDL + G E + + N T+L L
Sbjct: 171 LSCI-LLDLVSYHIKGGETESLQ-IPNTTVLHL 201
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 184 NLKQLILDDN-LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS 242
N+K L + D I P + T L+ QN F+ + L++L+TL LQRN
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFT---FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388
Query: 243 LSGEIPEDIGT--LANITILALSNNAL-TGAIPQSIRNMTKLVTLRLDSNVLSGEI 295
L + T ++++ L +S N+L + A ++ ++ L L SN+L+G +
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 67 CRWEMVRCRSRGPSQEVTGLDLNN--LFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQG 124
C V C + + TG+ L+ D+ +T + R+ L LDL N +
Sbjct: 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT- 67
Query: 125 EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLS 176
+P F LT+LT L L DN L SIP F NLR L + L N + S
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLNNPWDCACS 119
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 670 PSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
P F L L LDL +N L+ F KL QLT L L++N+L IP
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR 95
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 86 LDLNNLFPLD--SIVTSVVLAPIFR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDL 142
L L NL LD T V IF + SL L ++ NS Q F L LT+LDL
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182
Query: 143 KDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAE 202
L P+ +L L+ L++S N + L +L+ L N I E
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Query: 203 IGNL-TNLHKLSLRQNKFS 220
+ + ++L L+L QN F+
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 92/218 (42%), Gaps = 36/218 (16%)
Query: 222 GIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALT--GAIPQSIRNM 278
GIP S +L +LE+ LQ +P + L +T L+LS+N L+ G QS
Sbjct: 25 GIPSSATRL-ELESNKLQ------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 279 TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCS 338
T L L L N + S +L L+ ++ L + LK S+ LSLR+
Sbjct: 78 TSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVF-------LSLRN-- 127
Query: 339 VRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLF-E 396
L +LD+S + + L+ L + ++ N + P +F E
Sbjct: 128 --------------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 397 SRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
RNL+ L LS+ P +S+ VL +S NNF
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
++ + L N+++ PG F+ +L +DL +N ++ P LR L L L N
Sbjct: 33 TITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
I S GL +L+ L+L+ N I +L NL+ LSL NK + L
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 231 RKLETLDLQRN 241
R ++T+ L +N
Sbjct: 152 RAIQTMHLAQN 162
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 670 PSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
P F + L +DLS+N +S P F L+ L SL L NK++ +P+S
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKS 98
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 67 CRWEMVRCRSRGPSQEVTGLDLNN--LFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQG 124
C V C + + TG+ L+ D+ +T + R+ L LDL N +
Sbjct: 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT- 67
Query: 125 EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLS 176
+P F LT+LT L L DN L SIP F NL+ L + L N + S
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCACS 119
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
NQ+ P F L L LDL +N L+ F KL QLT L L++N+L
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 423 SVMVLMLSSNNFSGH-VPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRF 481
+ ++ + NN V S+ +L L+ N G+ PAFGS+ + ++++ N+
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 482 SGEVPSSF-GVT--ILMLSLSENK 502
+ E+P++F G T + LS + NK
Sbjct: 366 T-EIPANFCGFTEQVENLSFAHNK 388
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
++ + L N+++ PG F+ +L +DL +N ++ P LR L L L N
Sbjct: 33 TITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
I S GL +L+ L+L+ N I +L NL+ LSL NK + L
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 231 RKLETLDLQRN 241
R ++T+ L +N
Sbjct: 152 RAIQTMHLAQN 162
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 670 PSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
P F + L +DLS+N +S P F L+ L SL L NK++ +P+S
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKS 98
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
NQ+ P F L L LDL +N L+ F KL QLT L L++N+L
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 67 CRWEMVRCRSRGPSQEVTGLDLNN--LFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQG 124
C V C + + TG+ L+ D+ +T + R+ L LDL N +
Sbjct: 17 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT- 75
Query: 125 EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLS 176
+P F LT+LT L L DN L SIP F NL+ L + L N + S
Sbjct: 76 VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCACS 127
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 122/310 (39%), Gaps = 58/310 (18%)
Query: 111 SLMTLDLSYNSMQGEVPGTGFANL--TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA 168
S+ L LS NS T F L T LT LDL NNLN L LE+ L
Sbjct: 223 SIRNLSLS-NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL 228
N I+ S + GL N++ L L + + I +L +L K+ S
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI-----SLASLPKID----------DFSFQ 326
Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN-----ALTGAI-------PQSIR 276
L+ LE L+++ N + G L N+ L+LSN+ LT P I
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 277 NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRS 336
N+TK +++S+ S WL L+ + LG N++ LT R
Sbjct: 387 NLTKNKISKIESDAFS-----WLGHLEVLD---LGLNEIGQE----------LTGQEWRG 428
Query: 337 CSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFE 396
+ ++LS +L L+ N P L L L V L + S P P
Sbjct: 429 --LENIFEIYLSYNK---YLQLTRNSF-ALVPS-LQRLMLRRVALKN---VDSSPSPFQP 478
Query: 397 SRNLSVLVLS 406
RNL++L LS
Sbjct: 479 LRNLTILDLS 488
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 632 SLMDLSNNQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
++++L++NQL +N + P L +L+ L+L HN LS
Sbjct: 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87
Query: 692 KIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQ 726
+TFA LT L+L +N + +I +P + ++
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQK 121
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 104 APIFRIR---SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRY 160
PI+ ++ L L+L N E+P F +L L +DL NNLN ++P+ +FN +
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQV 584
Query: 161 -LEFLDLSANAIEGKLSSRVAG--LKNLKQL 188
L+ L+L N I + +V G +NL +L
Sbjct: 585 SLKSLNLQKNLITS-VEKKVFGPAFRNLTEL 614
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 25/135 (18%)
Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
++ L+L++N ++ +P F ++LT LD+ N ++ P L L+ L+L N
Sbjct: 26 NITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
+ A NL +L L N IQ ++ N F ++
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQ----------------KIKNNPF--------VKQ 120
Query: 231 RKLETLDLQRNSLSG 245
+ L TLDL N LS
Sbjct: 121 KNLITLDLSHNGLSS 135
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 122/310 (39%), Gaps = 58/310 (18%)
Query: 111 SLMTLDLSYNSMQGEVPGTGFANL--TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA 168
S+ L LS NS T F L T LT LDL NNLN L LE+ L
Sbjct: 228 SIRNLSLS-NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL 228
N I+ S + GL N++ L L + + I +L +L K+ S
Sbjct: 287 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI-----SLASLPKID----------DFSFQ 331
Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN-----ALTGAI-------PQSIR 276
L+ LE L+++ N + G L N+ L+LSN+ LT P I
Sbjct: 332 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 391
Query: 277 NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRS 336
N+TK +++S+ S WL L+ + LG N++ LT R
Sbjct: 392 NLTKNKISKIESDAFS-----WLGHLEVLD---LGLNEIGQE----------LTGQEWRG 433
Query: 337 CSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFE 396
+ ++LS +L L+ N P L L L V L + S P P
Sbjct: 434 --LENIFEIYLSYNK---YLQLTRNSF-ALVPS-LQRLMLRRVALKN---VDSSPSPFQP 483
Query: 397 SRNLSVLVLS 406
RNL++L LS
Sbjct: 484 LRNLTILDLS 493
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 632 SLMDLSNNQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
++++L++NQL +N + P L +L+ L+L HN LS
Sbjct: 33 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 92
Query: 692 KIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQ 726
+TFA LT L+L +N + +I +P + ++
Sbjct: 93 LSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQK 126
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 104 APIFRIR---SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRY 160
PI+ ++ L L+L N E+P F +L L +DL NNLN ++P+ +FN +
Sbjct: 532 GPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQV 589
Query: 161 -LEFLDLSANAIEGKLSSRVAG--LKNLKQL 188
L+ L+L N I + +V G +NL +L
Sbjct: 590 SLKSLNLQKNLITS-VEKKVFGPAFRNLTEL 619
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 25/134 (18%)
Query: 112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAI 171
+ L+L++N ++ +P F ++LT LD+ N ++ P L L+ L+L N +
Sbjct: 32 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 172 EGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLR 231
A NL +L L N IQ ++ N F ++ +
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQ----------------KIKNNPF--------VKQK 126
Query: 232 KLETLDLQRNSLSG 245
L TLDL N LS
Sbjct: 127 NLITLDLSHNGLSS 140
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 122/310 (39%), Gaps = 58/310 (18%)
Query: 111 SLMTLDLSYNSMQGEVPGTGFANL--TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA 168
S+ L LS NS T F L T LT LDL NNLN L LE+ L
Sbjct: 233 SIRNLSLS-NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL 228
N I+ S + GL N++ L L + + I +L +L K+ S
Sbjct: 292 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI-----SLASLPKID----------DFSFQ 336
Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN-----ALTGAI-------PQSIR 276
L+ LE L+++ N + G L N+ L+LSN+ LT P I
Sbjct: 337 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 396
Query: 277 NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRS 336
N+TK +++S+ S WL L+ + LG N++ LT R
Sbjct: 397 NLTKNKISKIESDAFS-----WLGHLEVLD---LGLNEIGQE----------LTGQEWRG 438
Query: 337 CSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFE 396
+ ++LS +L L+ N P L L L V L + S P P
Sbjct: 439 --LENIFEIYLSYNK---YLQLTRNSF-ALVPS-LQRLMLRRVALKN---VDSSPSPFQP 488
Query: 397 SRNLSVLVLS 406
RNL++L LS
Sbjct: 489 LRNLTILDLS 498
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 632 SLMDLSNNQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
++++L++NQL +N + P L +L+ L+L HN LS
Sbjct: 38 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 97
Query: 692 KIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQ 726
+TFA LT L+L +N + +I +P + ++
Sbjct: 98 LSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQK 131
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 104 APIFRIR---SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRY 160
PI+ ++ L L+L N E+P F +L L +DL NNLN ++P+ +FN +
Sbjct: 537 GPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQV 594
Query: 161 -LEFLDLSANAIEGKLSSRVAG--LKNLKQL 188
L+ L+L N I + +V G +NL +L
Sbjct: 595 SLKSLNLQKNLITS-VEKKVFGPAFRNLTEL 624
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 25/134 (18%)
Query: 112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAI 171
+ L+L++N ++ +P F ++LT LD+ N ++ P L L+ L+L N +
Sbjct: 37 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 172 EGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLR 231
A NL +L L N IQ ++ N F ++ +
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQ----------------KIKNNPF--------VKQK 131
Query: 232 KLETLDLQRNSLSG 245
L TLDL N LS
Sbjct: 132 NLITLDLSHNGLSS 145
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 28/185 (15%)
Query: 78 GPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRL 137
G ++ V LDL+N + +T + + + R +L L L+ N + + F++L L
Sbjct: 49 GLTEAVKSLDLSN-----NRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSL 102
Query: 138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG 197
+LDL N L+ S L L FL+L N K L + L +L +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-----------YKTLGETSLFSHLTKL 151
Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI 257
QI +GN+ K +++ F+G L LE L++ + L P+ + ++ N+
Sbjct: 152 QI-LRVGNMDTFTK--IQRKDFAG--------LTFLEELEIDASDLQSYEPKSLKSIQNV 200
Query: 258 TILAL 262
+ L L
Sbjct: 201 SHLIL 205
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
+++LDL N ++ D+ N+ L L++N + S ++ L L L N LS
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 293 GEISTWLFDLQGMKSLYLGGNKLK 316
S+W L + L L GN K
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYK 137
>pdb|3GGN|A Chain A, Crystal Structure Of Dr_a0006 From Deinococcus
Radiodurans. Northeast Structural Genomics Consortium
Target Drr147d
pdb|3GGN|B Chain B, Crystal Structure Of Dr_a0006 From Deinococcus
Radiodurans. Northeast Structural Genomics Consortium
Target Drr147d
Length = 155
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 222 GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLA 255
G+PL + LR +E LD +R+ + E P +GT++
Sbjct: 28 GLPLLMTHLRSVEVLDDKRSRWTVEAPAPLGTVS 61
>pdb|4HNG|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008
pdb|4HNH|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
pdb|4HNH|B Chain B, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
Length = 221
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 379 VILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHV 438
+ L L +PP + + ++V+ S N G+L + + + V V + S + +
Sbjct: 33 ITLYGRQLKTRIPPEIIDHERVTVIEGSFQN-PGKLEQAVTNAEVVFVGAMESGSDMASI 91
Query: 439 PKSIS--NIYRLLVLDLSNNSFSGEFP 463
K++S NI R V+ +S SGEFP
Sbjct: 92 VKALSRKNIRR--VIGVSMAGLSGEFP 116
>pdb|4IPT|A Chain A, The Crystal Structure Of A Short-chain
Dehydrogenases/reductase (ethylated) From Veillonella
Parvula Dsm 2008
Length = 221
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 379 VILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHV 438
+ L L +PP + + ++V+ S N G+L + + + V V S + +
Sbjct: 33 ITLYGRQLXTRIPPEIIDHERVTVIEGSFQN-PGKLEQAVTNAEVVFVGAXESGSDXASI 91
Query: 439 PKSIS--NIYRLLVLDLSNNSFSGEFP 463
K++S NI R V+ +S SGEFP
Sbjct: 92 VKALSRKNIRR--VIGVSXAGLSGEFP 116
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 30/135 (22%)
Query: 147 LNGSIP------SQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQ---- 196
L+G IP + L L+ + L LS N IE K+SS ++G++NL+ L L NLI+
Sbjct: 31 LHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIKKIEN 88
Query: 197 ---------------GQIPAEIG--NLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDL 238
QI + G L NL L + NK + G L L KLE L L
Sbjct: 89 LDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 148
Query: 239 QRNSLSGEIPEDIGT 253
N L + E+ T
Sbjct: 149 AGNPLYNDYKENNAT 163
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 19/160 (11%)
Query: 182 LKNLKQLILDDNLIQGQI---PAEIGNLTNLHKLSLRQNKFSG--GIPLSLLQLRKLETL 236
LK+L+ L L +NL+ + A +L L LRQN + +LL L+ L +
Sbjct: 333 LKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNI 392
Query: 237 DLQRNSLSGEIPEDIGTLANITILALSN---NALTGAIPQSIRNMTKLVTLRLDSNVLSG 293
D+ +NS +PE + L LS+ +++TG IP+++ + +V +
Sbjct: 393 DISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEIL----------DVSNN 441
Query: 294 EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELS 333
++ + +L +K LY+ NKL + S++P ++ ++S
Sbjct: 442 NLNLFSLNLPQLKELYISRNKLMTLPDASLLPMLLVLKIS 481
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 28/185 (15%)
Query: 78 GPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRL 137
G ++ V LDL+N + +T + + + R +L L L+ N + + F++L L
Sbjct: 23 GLTEAVKSLDLSN-----NRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSL 76
Query: 138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG 197
+LDL N L+ S L L FL+L N K L + L +L +
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-----------KTLGETSLFSHLTKL 125
Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI 257
QI +GN+ K +++ F+G L LE L++ + L P+ + ++ N+
Sbjct: 126 QI-LRVGNMDTFTK--IQRKDFAG--------LTFLEELEIDASDLQSYEPKSLKSIQNV 174
Query: 258 TILAL 262
+ L L
Sbjct: 175 SHLIL 179
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
+++LDL N ++ D+ N+ L L++N + S ++ L L L N LS
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 293 GEISTWLFDLQGMKSLYLGGNKLK 316
S+W L + L L GN K
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYK 111
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 30/135 (22%)
Query: 147 LNGSIP------SQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQ---- 196
L+G IP + L L+ + L LS N IE K+SS ++G++NL+ L L NLI+
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIKKIEN 87
Query: 197 ---------------GQIPAEIG--NLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDL 238
QI + G L NL L + NK + G L L KLE L L
Sbjct: 88 LDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147
Query: 239 QRNSLSGEIPEDIGT 253
N L + E+ T
Sbjct: 148 AGNPLYNDYKENNAT 162
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 126 VPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSAN 169
+P F LT+LT LDL DN+L SIP F NL+ L + L N
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
>pdb|3R6D|A Chain A, Crystal Structure Of Nad-Dependent EpimeraseDEHYDRATASE
FROM Veillonella Parvula Dsm 2008 With Cz-Methylated
Lysine
Length = 221
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 379 VILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHV 438
+ L L +PP + + ++V+ S N G L + + + V V S + +
Sbjct: 33 ITLYGRQLKTRIPPEIIDHERVTVIEGSFQN-PGXLEQAVTNAEVVFVGAXESGSDXASI 91
Query: 439 PKSIS--NIYRLLVLDLSNNSFSGEFP 463
K++S NI R V+ +S SGEFP
Sbjct: 92 VKALSRXNIRR--VIGVSXAGLSGEFP 116
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 4/136 (2%)
Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDS 288
+L L L+L+RN L+G P ++I L L N + + + +L TL L
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 289 NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS 348
N +S + L + SL L N N +++ + L + SL + R P S
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE-WLRKKSLNGGAARCGAP---S 167
Query: 349 TQTELTFLDLSENELE 364
++ DL +E +
Sbjct: 168 KVRDVQIKDLPHSEFK 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,461,410
Number of Sequences: 62578
Number of extensions: 746568
Number of successful extensions: 2743
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 770
length of query: 757
length of database: 14,973,337
effective HSP length: 106
effective length of query: 651
effective length of database: 8,340,069
effective search space: 5429384919
effective search space used: 5429384919
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)