Query 041016
Match_columns 757
No_of_seqs 812 out of 4653
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:59:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5E-74 1.1E-78 689.9 48.6 584 26-742 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.5E-59 5.5E-64 562.5 39.0 514 110-739 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 4.7E-42 1E-46 333.6 -16.0 472 110-714 45-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 2.7E-38 5.9E-43 320.8 8.2 363 137-547 80-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.5E-41 9.7E-46 326.8 -15.5 474 101-666 59-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 1E-37 2.2E-42 316.7 6.0 394 67-480 52-450 (873)
7 KOG0618 Serine/threonine phosp 100.0 3.1E-37 6.7E-42 329.9 -4.1 502 101-722 12-517 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.4E-36 5.2E-41 323.1 -6.6 480 141-712 4-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-34 2.4E-39 296.3 -4.7 371 108-556 5-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.5E-33 7.6E-38 285.4 -2.3 367 234-718 10-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.4E-22 3E-27 244.1 28.4 128 421-550 777-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.6E-22 3.4E-27 243.6 28.8 146 329-481 591-737 (1153)
13 KOG4237 Extracellular matrix p 99.9 7.8E-26 1.7E-30 220.7 -4.4 408 135-573 67-498 (498)
14 KOG4237 Extracellular matrix p 99.9 8.8E-25 1.9E-29 213.5 -2.9 362 111-479 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.2E-20 9.1E-25 206.1 17.7 263 351-719 201-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.2E-20 9.1E-25 206.1 16.9 263 329-697 203-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.9E-18 4E-23 194.5 17.3 41 24-71 59-99 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.5E-19 1.8E-23 197.2 13.2 244 376-714 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.1E-19 1.3E-23 185.1 2.5 236 131-366 19-293 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.3E-19 9.2E-24 186.3 0.9 281 139-457 2-318 (319)
21 KOG0617 Ras suppressor protein 99.7 7.3E-19 1.6E-23 152.5 -5.0 161 134-300 32-193 (264)
22 KOG0617 Ras suppressor protein 99.7 8.9E-19 1.9E-23 152.0 -5.9 167 105-278 28-195 (264)
23 PLN03150 hypothetical protein; 99.5 5.5E-14 1.2E-18 158.3 13.8 154 23-219 367-527 (623)
24 PLN03150 hypothetical protein; 99.4 9E-13 1.9E-17 148.5 9.1 118 631-749 420-539 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.2E-13 2.6E-18 142.2 -5.4 194 467-712 73-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 6.1E-13 1.3E-17 137.1 -4.4 181 108-299 73-253 (722)
27 COG4886 Leucine-rich repeat (L 99.2 5.3E-11 1.2E-15 128.6 8.4 197 450-718 97-294 (394)
28 KOG1259 Nischarin, modulator o 99.1 9.7E-12 2.1E-16 118.3 1.6 61 513-576 282-342 (490)
29 COG4886 Leucine-rich repeat (L 99.1 9.9E-11 2.1E-15 126.5 8.0 180 158-369 115-295 (394)
30 KOG1909 Ran GTPase-activating 99.1 6.2E-12 1.3E-16 122.7 -1.5 91 105-196 25-133 (382)
31 PF14580 LRR_9: Leucine-rich r 99.0 3E-10 6.5E-15 104.5 5.0 102 158-262 41-147 (175)
32 KOG1909 Ran GTPase-activating 99.0 7.1E-11 1.5E-15 115.4 -0.0 175 394-577 26-227 (382)
33 PF14580 LRR_9: Leucine-rich r 99.0 4.4E-10 9.6E-15 103.4 4.9 105 111-220 20-126 (175)
34 KOG3207 Beta-tubulin folding c 98.9 1.4E-10 3.1E-15 116.4 0.3 62 420-481 119-184 (505)
35 KOG3207 Beta-tubulin folding c 98.9 1E-10 2.2E-15 117.4 -0.9 207 133-340 119-339 (505)
36 KOG4658 Apoptotic ATPase [Sign 98.9 1.6E-09 3.4E-14 124.9 6.7 106 135-241 545-652 (889)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.7E-14 124.6 6.6 153 131-286 519-675 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 7.4E-10 1.6E-14 83.7 2.4 61 653-713 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 1.9E-10 4.1E-15 124.3 -1.3 246 396-718 70-322 (414)
40 KOG1259 Nischarin, modulator o 98.9 5.4E-10 1.2E-14 106.6 1.8 130 421-577 283-413 (490)
41 KOG0531 Protein phosphatase 1, 98.8 7.3E-10 1.6E-14 119.8 -0.7 200 132-365 69-269 (414)
42 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 7E-14 80.1 2.6 61 629-689 1-61 (61)
43 PF08263 LRRNT_2: Leucine rich 98.7 1.1E-08 2.4E-13 70.4 4.2 40 27-75 2-43 (43)
44 KOG1859 Leucine-rich repeat pr 98.4 1.8E-09 4E-14 114.8 -10.4 181 103-292 102-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.3 2.4E-08 5.1E-13 95.6 -3.9 174 399-574 186-374 (419)
46 KOG2120 SCF ubiquitin ligase, 98.3 1E-08 2.2E-13 98.1 -7.0 175 137-313 187-373 (419)
47 KOG1859 Leucine-rich repeat pr 98.3 2.3E-08 5E-13 106.6 -6.1 178 129-316 103-292 (1096)
48 COG5238 RNA1 Ran GTPase-activa 98.2 4.4E-07 9.6E-12 85.9 0.7 88 107-195 27-132 (388)
49 KOG4579 Leucine-rich repeat (L 98.1 1.4E-07 3E-12 79.9 -4.5 90 630-722 78-167 (177)
50 PRK15386 type III secretion pr 98.0 1.6E-05 3.5E-10 82.5 8.9 66 511-582 48-113 (426)
51 KOG2982 Uncharacterized conser 97.9 2.3E-06 5E-11 82.3 0.5 80 398-477 199-287 (418)
52 KOG4579 Leucine-rich repeat (L 97.9 4.4E-07 9.6E-12 77.0 -4.6 82 112-196 29-113 (177)
53 COG5238 RNA1 Ran GTPase-activa 97.9 1.2E-05 2.7E-10 76.4 4.2 90 131-220 26-133 (388)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 54.7 3.6 36 136-172 2-37 (44)
55 KOG2982 Uncharacterized conser 97.8 5E-06 1.1E-10 80.0 0.3 106 184-289 46-156 (418)
56 PF12799 LRR_4: Leucine Rich r 97.7 2.8E-05 6.1E-10 53.5 2.9 36 654-690 2-37 (44)
57 PF13306 LRR_5: Leucine rich r 97.7 0.00013 2.7E-09 64.8 7.1 108 127-239 4-111 (129)
58 PRK15386 type III secretion pr 97.6 0.00031 6.7E-09 73.1 9.8 55 444-501 50-104 (426)
59 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.8E-09 65.9 6.2 58 136-195 43-100 (233)
60 PF13306 LRR_5: Leucine rich r 97.5 0.00036 7.9E-09 61.9 7.3 106 153-263 6-111 (129)
61 KOG3665 ZYG-1-like serine/thre 97.4 3.8E-05 8.2E-10 86.9 0.9 138 135-274 122-269 (699)
62 KOG1644 U2-associated snRNP A' 97.4 0.00028 6.1E-09 64.6 5.7 84 110-196 42-126 (233)
63 KOG3665 ZYG-1-like serine/thre 97.4 6.1E-05 1.3E-09 85.3 1.1 148 159-308 122-280 (699)
64 KOG2739 Leucine-rich acidic nu 97.0 0.00032 7E-09 67.2 2.4 63 107-172 40-104 (260)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00073 1.6E-08 64.8 2.3 64 131-196 39-104 (260)
66 KOG4341 F-box protein containi 96.4 0.00033 7.1E-09 71.2 -2.8 15 348-362 317-331 (483)
67 KOG4341 F-box protein containi 96.4 0.00017 3.7E-09 73.2 -5.1 131 349-479 292-436 (483)
68 KOG2123 Uncharacterized conser 95.9 0.00053 1.1E-08 65.9 -4.1 80 231-314 19-99 (388)
69 KOG1947 Leucine rich repeat pr 95.6 0.0014 3E-08 73.1 -2.8 63 180-242 240-306 (482)
70 KOG2123 Uncharacterized conser 95.6 0.00049 1.1E-08 66.0 -5.5 98 136-237 20-123 (388)
71 PF00560 LRR_1: Leucine Rich R 95.1 0.0068 1.5E-07 34.5 0.2 12 655-666 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.7 0.013 2.8E-07 33.3 0.7 18 137-155 2-19 (22)
73 KOG1947 Leucine rich repeat pr 94.4 0.0051 1.1E-07 68.5 -2.7 131 157-287 186-329 (482)
74 KOG0473 Leucine-rich repeat pr 93.6 0.0012 2.7E-08 61.7 -7.8 92 125-219 32-123 (326)
75 KOG4308 LRR-containing protein 92.1 0.0013 2.8E-08 71.3 -11.5 132 185-316 146-303 (478)
76 KOG4308 LRR-containing protein 91.9 0.0013 2.7E-08 71.5 -12.0 37 423-459 88-128 (478)
77 smart00369 LRR_TYP Leucine-ric 90.4 0.22 4.9E-06 29.5 1.9 16 653-668 2-17 (26)
78 smart00370 LRR Leucine-rich re 90.4 0.22 4.9E-06 29.5 1.9 16 653-668 2-17 (26)
79 PF13504 LRR_7: Leucine rich r 89.4 0.25 5.5E-06 26.0 1.4 10 137-146 3-12 (17)
80 smart00370 LRR Leucine-rich re 88.9 0.31 6.8E-06 28.9 1.8 20 677-696 2-21 (26)
81 smart00369 LRR_TYP Leucine-ric 88.9 0.31 6.8E-06 28.9 1.8 20 677-696 2-21 (26)
82 KOG0473 Leucine-rich repeat pr 88.7 0.0093 2E-07 56.0 -7.4 88 154-244 37-124 (326)
83 KOG3864 Uncharacterized conser 84.3 0.17 3.8E-06 46.9 -1.6 81 493-573 103-186 (221)
84 KOG3864 Uncharacterized conser 84.2 0.1 2.3E-06 48.3 -3.1 80 631-710 103-185 (221)
85 PF13516 LRR_6: Leucine Rich r 80.5 0.9 2E-05 26.3 1.0 18 422-439 2-19 (24)
86 KOG4242 Predicted myosin-I-bin 73.2 21 0.00046 38.1 9.1 16 280-295 355-370 (553)
87 smart00365 LRR_SD22 Leucine-ri 71.0 3.5 7.6E-05 24.5 1.8 14 677-690 2-15 (26)
88 KOG4242 Predicted myosin-I-bin 64.6 28 0.00061 37.1 7.9 22 421-442 164-185 (553)
89 smart00364 LRR_BAC Leucine-ric 59.3 6.8 0.00015 23.2 1.4 13 654-666 3-15 (26)
90 smart00368 LRR_RI Leucine rich 59.2 8.2 0.00018 23.3 1.9 14 653-666 2-15 (28)
91 KOG3763 mRNA export factor TAP 43.4 11 0.00025 40.8 1.2 63 628-692 217-285 (585)
92 KOG3763 mRNA export factor TAP 36.9 22 0.00047 38.8 2.1 14 328-341 271-284 (585)
93 smart00367 LRR_CC Leucine-rich 30.8 36 0.00077 19.9 1.5 13 514-526 1-13 (26)
94 TIGR00864 PCC polycystin catio 29.8 28 0.00062 45.7 1.8 34 659-692 1-34 (2740)
95 TIGR00864 PCC polycystin catio 26.7 38 0.00083 44.6 2.1 33 635-667 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5e-74 Score=689.87 Aligned_cols=584 Identities=38% Similarity=0.610 Sum_probs=483.4
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeecccc
Q 041016 26 PEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAP 105 (757)
Q Consensus 26 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~ 105 (757)
.++|++||++||+.+. + + .+.+.+|+...+||.|.||+|+. .++|+.++|++. .+.|.+++.
T Consensus 27 ~~~~~~~l~~~~~~~~---~-~------~~~~~~w~~~~~~c~w~gv~c~~---~~~v~~L~L~~~-----~i~~~~~~~ 88 (968)
T PLN00113 27 HAEELELLLSFKSSIN---D-P------LKYLSNWNSSADVCLWQGITCNN---SSRVVSIDLSGK-----NISGKISSA 88 (968)
T ss_pred CHHHHHHHHHHHHhCC---C-C------cccCCCCCCCCCCCcCcceecCC---CCcEEEEEecCC-----CccccCChH
Confidence 4689999999999985 2 4 45578998878999999999985 568999999986 778888889
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL 185 (757)
Q Consensus 106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 185 (757)
+..+++|++|+|++|.+.|.+|...+..+++|++|+|++|.+++.+|. +.+++|++|+|++|.+.+..|..++++++|
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 999999999999999999999966677999999999999999988885 568899999999999988888889999999
Q ss_pred CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN 265 (757)
Q Consensus 186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 265 (757)
++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 99999999988888988999999999999999988888888888999999999999988888888888889999999888
Q ss_pred CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016 266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL 345 (757)
Q Consensus 266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 345 (757)
.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+. +.+|.
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~------------------------~~~p~ 302 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS------------------------GEIPE 302 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec------------------------cCCCh
Confidence 888888888888888888888888888878877877777777777777665 66777
Q ss_pred hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM 425 (757)
Q Consensus 346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 425 (757)
++..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++.+|..++.+++|+
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------------------~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALT-----------------------SLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHh-----------------------cCCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 777777788887777777765555444 445555555555555555555555555666
Q ss_pred EEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccc
Q 041016 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFS 504 (757)
Q Consensus 426 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~ 504 (757)
.|++++|++.+.+|..+..+++|+.|++++|.+.+.+| .+..+++|+.|++++|++ +
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l----------------------~ 417 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF----------------------S 417 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe----------------------e
Confidence 66666666655556556555566666666655555554 444444544444444433 3
Q ss_pred cccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccc
Q 041016 505 GQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG 584 (757)
Q Consensus 505 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 584 (757)
+..|..|.+++.|+.|++++|.+++.+|..+..+++|++|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhh
Confidence 4455667788888889999888888888888888899999999999888888765 458899999999999998888877
Q ss_pred cccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCC
Q 041016 585 NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQ 664 (757)
Q Consensus 585 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 664 (757)
++..| +.|+|++|++.+.+|..++++++|++|+|++|.
T Consensus 497 ~l~~L------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 497 SLSEL------------------------------------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred hhhcc------------------------------------------CEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 66555 889999999999999999999999999999999
Q ss_pred CCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCCCCC
Q 041016 665 LQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQ 742 (757)
Q Consensus 665 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc~~~ 742 (757)
+++.+|..|..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...+ |.||+++||.+
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~-~~~n~~lc~~~ 611 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA-VAGNIDLCGGD 611 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh-hcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-59 Score=562.53 Aligned_cols=514 Identities=36% Similarity=0.604 Sum_probs=438.5
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL 188 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 188 (757)
.+++.|+|++|.++|.++ ..|..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+.+..|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 468899999999998887 7889999999999999999988888765 899999999999998877665 457888899
Q ss_pred EccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC
Q 041016 189 ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT 268 (757)
Q Consensus 189 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 268 (757)
++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 99988888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016 269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS 348 (757)
Q Consensus 269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 348 (757)
+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+. +.+|.++.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------------------~~~p~~l~ 281 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS------------------------GPIPPSIF 281 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee------------------------ccCchhHh
Confidence 888888888888888888888887777777777777777777766655 56666777
Q ss_pred CCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEE
Q 041016 349 TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLM 428 (757)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 428 (757)
.+++|++|++++|.+.+. +|..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 282 ~l~~L~~L~Ls~n~l~~~-----------------------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 338 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGE-----------------------IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338 (968)
T ss_pred hccCcCEEECcCCeeccC-----------------------CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence 777777777777766654 445556678899999999999999999999999999999
Q ss_pred ccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcccccc
Q 041016 429 LSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQL 507 (757)
Q Consensus 429 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~ 507 (757)
+++|.+.+.+|..+..+++|+.|++++|.+.+.+| .+.....|+.+++++| .+.+.+
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n----------------------~l~~~~ 396 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN----------------------SLEGEI 396 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC----------------------EecccC
Confidence 99999999999999999999999999999988777 5655666665555555 455566
Q ss_pred chhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCccccccc
Q 041016 508 PQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQ 587 (757)
Q Consensus 508 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 587 (757)
|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|..+.
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--- 473 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--- 473 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---
Confidence 77788999999999999999999999999999999999999999999999999999999999999999988876542
Q ss_pred ccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCc
Q 041016 588 GMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG 667 (757)
Q Consensus 588 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 667 (757)
...|+.||+++|++++.+|..|.++++|++|+|++|++++
T Consensus 474 ----------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 474 ----------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred ----------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 2345899999999999999999999999999999999999
Q ss_pred cCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCC-CCCCCCCCccccCCCCCC
Q 041016 668 NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP-QMDRQIDPVIYANNSGLC 739 (757)
Q Consensus 668 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~~~~~~~~~~~gn~~lc 739 (757)
.+|+.+.++++|++|+|++|.+++.+|..+..+++|++|++++|+++|.+|..- .+..+.... +.+|+..+
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~-ls~N~l~~ 585 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN-ISHNHLHG 585 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe-ccCCccee
Confidence 999999999999999999999999999999999999999999999999999752 233334444 66776554
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.7e-42 Score=333.61 Aligned_cols=472 Identities=29% Similarity=0.422 Sum_probs=257.3
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
..++.+++++|.+. .+- ..+.++..|++|++++|+++ ..|++++++..++.++.++|++. .+|..+..+.+|+.++
T Consensus 45 v~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchh-hcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 35677777777775 333 45677777788888888777 67777777777777777777776 4555556666666666
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG 269 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 269 (757)
.++|.+. .+|++++.+..|+.++..+|+++ ..|..+.++.+|..+++.+|.+....|..+. ++.|++|+...|.+.
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE- 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence 6666655 45555666666666666666665 4455555555555555555555533333322 555555555555444
Q ss_pred ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchh-cc
Q 041016 270 AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW-LS 348 (757)
Q Consensus 270 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-l~ 348 (757)
.+|+.++.+.+|+.|++..|++. ..| .|.++..|++++++.|++. .+|.. ..
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-------------------------~lpae~~~ 249 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-------------------------MLPAEHLK 249 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-------------------------hhHHHHhc
Confidence 44555555555555555555544 223 3444444444444444433 33333 33
Q ss_pred CCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEE
Q 041016 349 TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLM 428 (757)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 428 (757)
+++++..||+.+|++. ..|+.+.-+.+|++||+++|.++ ..|..++++ .|+.|.
T Consensus 250 ~L~~l~vLDLRdNklk------------------------e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK------------------------EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLA 303 (565)
T ss_pred ccccceeeeccccccc------------------------cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehh
Confidence 6677777777777766 45555556666777777777776 345566666 677777
Q ss_pred ccCCcccccChHhhhccCC---CCEE-------EccCCc---------ccccCCCCCCCCcccEEECcCCccccCCCchh
Q 041016 429 LSSNNFSGHVPKSISNIYR---LLVL-------DLSNNS---------FSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF 489 (757)
Q Consensus 429 L~~n~l~~~~~~~l~~l~~---L~~L-------~ls~n~---------l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 489 (757)
+.+|.+.. +...+-+... |++| .++.-. ..+.+|......+.+.|++++-+++......|
T Consensus 304 leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVf 382 (565)
T KOG0472|consen 304 LEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVF 382 (565)
T ss_pred hcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHH
Confidence 77776652 2211111100 0000 000000 00112233334455566666655553332222
Q ss_pred hhc----ccEEEccCCccccccchhccCCCCCCE-EeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCC
Q 041016 490 GVT----ILMLSLSENKFSGQLPQNLSNLSLLQH-LDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTS 564 (757)
Q Consensus 490 ~~~----l~~L~l~~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 564 (757)
... +...+++.|++. ++|..+..++.+.. +++++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+..
T Consensus 383 ea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~ 459 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR 459 (565)
T ss_pred HHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhh
Confidence 211 445555555554 34444444433332 23333333 245555555555555555555544 34444455555
Q ss_pred CCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCc
Q 041016 565 LQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE 644 (757)
Q Consensus 565 L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~ 644 (757)
|+.||++.| +|. .
T Consensus 460 Lq~LnlS~N------------------------------------------------------------------rFr-~ 472 (565)
T KOG0472|consen 460 LQTLNLSFN------------------------------------------------------------------RFR-M 472 (565)
T ss_pred hheeccccc------------------------------------------------------------------ccc-c
Confidence 555555555 444 4
Q ss_pred CCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcce
Q 041016 645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714 (757)
Q Consensus 645 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 714 (757)
+|..+..+..|+.+-.++|++....|+.+.++.+|.+|||.+|.+. .+|..++++++|++|++++|+|.
T Consensus 473 lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 473 LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 5555555555555555556666666666666666666677666666 45556667777777777777766
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-38 Score=320.84 Aligned_cols=363 Identities=23% Similarity=0.243 Sum_probs=184.9
Q ss_pred CCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccc
Q 041016 137 LTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216 (757)
Q Consensus 137 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 216 (757)
-+.||+++|.++..-+..|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+.+-.+++..++.|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 344555555555544555555555555555555554 2333333334455555555555544444455555555555555
Q ss_pred cccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccc
Q 041016 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEIS 296 (757)
Q Consensus 217 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 296 (757)
|.++.....+|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++ ...+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit------------------------tLp~ 214 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT------------------------TLPQ 214 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc------------------------ccCH
Confidence 5554333333444444555555555554444444444445555555555544 4444
Q ss_pred hhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-
Q 041016 297 TWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN- 375 (757)
Q Consensus 297 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~- 375 (757)
..|.++++|+.|+|..|++..++...|.+..+|+.|.+..|.+...-...|-.+.++++|+++.|+++..-..|+.+++
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 4444445555555555544444444444444444444444444444444455555566666666665544444444444
Q ss_pred ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccC
Q 041016 376 LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN 455 (757)
Q Consensus 376 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~ 455 (757)
|+.|++++|.+...-++....+++|++|+|+.|+++...+..|..+..|++|.|++|.+...-...|..+.+|++||+++
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 44444444444444455555666677777777766666666666666666666666666655555666666666666666
Q ss_pred CcccccCC----CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcc
Q 041016 456 NSFSGEFP----AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEF 531 (757)
Q Consensus 456 n~l~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 531 (757)
|.++..+. .|..+++|+.|++.+|++ ..+...+|.+++.|++|||.+|.|..+-
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNql----------------------k~I~krAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQL----------------------KSIPKRAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCcee----------------------eecchhhhccCcccceecCCCCcceeec
Confidence 66654333 233333333333333322 2222344555555555555555555555
Q ss_pred hhhccCCCCCCEEEcc
Q 041016 532 PAFLSQLSSLQVLNLR 547 (757)
Q Consensus 532 ~~~l~~l~~L~~L~Ls 547 (757)
|.+|..+ .|++|.+.
T Consensus 433 ~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 433 PNAFEPM-ELKELVMN 447 (873)
T ss_pred ccccccc-hhhhhhhc
Confidence 5555544 45555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-41 Score=326.78 Aligned_cols=474 Identities=28% Similarity=0.402 Sum_probs=320.2
Q ss_pred eccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccccc
Q 041016 101 VVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVA 180 (757)
Q Consensus 101 ~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 180 (757)
.+.+.+.++..+.+|++++|+++ ..| .+++.+..++.++.++|.++ .+|++++.+.+|+.++.++|.+. ..++.++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~ 134 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIG 134 (565)
T ss_pred hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHH
Confidence 45567889999999999999998 778 78999999999999999999 89999999999999999999998 6778889
Q ss_pred CCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q 041016 181 GLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITIL 260 (757)
Q Consensus 181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 260 (757)
.+..|+.++..+|+++ ..|.++.++.+|..+++.+|++....|. .-+++.|++||...|-++ .+|..++.+.+|.-|
T Consensus 135 ~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELL 211 (565)
T ss_pred HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence 9999999999999998 6888999999999999999999955554 444999999999999887 789999999999999
Q ss_pred EccCCCCCCccchhhhcCCCCCEEEccCCccccccchh-hhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccC
Q 041016 261 ALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTW-LFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSV 339 (757)
Q Consensus 261 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~ 339 (757)
++..|++. ..| .|..|..|.+++++.|.+. .+|.. ..++.++..||+..|+++..+.+ +.-..+|++|++++|.+
T Consensus 212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 212 YLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDI 287 (565)
T ss_pred Hhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCcc
Confidence 99999998 566 8999999999999999997 45554 45899999999999999833322 11222344444444444
Q ss_pred ccCcchhccCCCCCCEEEccCCcccCcccccccCcc---ccEEEc--CCCcCCCCCCCCccCCCCCCEEeCcCccccccC
Q 041016 340 RGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN---LGTVIL--SDNMLTGSLPPPLFESRNLSVLVLSRNNFSGEL 414 (757)
Q Consensus 340 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---L~~L~l--~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 414 (757)
+ ..|..++++ .|+.|.+.+|.+...-.+.+..-+ |++|.= ....++.... ..-..-+. ..+..
T Consensus 288 s-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~------~~e~~~t~----~~~~~ 355 (565)
T KOG0472|consen 288 S-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG------GTETAMTL----PSESF 355 (565)
T ss_pred c-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc------cccccCCC----CCCcc
Confidence 4 233344444 444444444444321111111110 111110 0000000000 00000000 00011
Q ss_pred CcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhc--
Q 041016 415 PETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVT-- 492 (757)
Q Consensus 415 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-- 492 (757)
| ......+.+.|++++-+++. +|........ -.-...++++.|++. ++|..+...
T Consensus 356 ~-~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~--------------------~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 356 P-DIYAIITTKILDVSDKQLTL-VPDEVFEAAK--------------------SEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred c-chhhhhhhhhhccccccccc-CCHHHHHHhh--------------------hcceEEEecccchHh-hhhhhhHHHHH
Confidence 1 12224455666666666663 3333222222 111233444444443 344443332
Q ss_pred -ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECc
Q 041016 493 -ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS 571 (757)
Q Consensus 493 -l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 571 (757)
++.+.+++|.+ +.+|..++.+++|+.|++++|-+. .+|..++.+..|+.|+++.|+|. .+|..+..+..++.+-.+
T Consensus 413 lvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas 489 (565)
T KOG0472|consen 413 LVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLAS 489 (565)
T ss_pred HHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence 44455555554 367788899999999999999888 78889999999999999999987 677776666666666666
Q ss_pred CCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccC
Q 041016 572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGS 651 (757)
Q Consensus 572 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~ 651 (757)
+|++....|+.+.++.+| +.|||.+|.+. .+|..+++
T Consensus 490 ~nqi~~vd~~~l~nm~nL------------------------------------------~tLDL~nNdlq-~IPp~Lgn 526 (565)
T KOG0472|consen 490 NNQIGSVDPSGLKNMRNL------------------------------------------TTLDLQNNDLQ-QIPPILGN 526 (565)
T ss_pred cccccccChHHhhhhhhc------------------------------------------ceeccCCCchh-hCChhhcc
Confidence 666654444333333332 56666666665 55666666
Q ss_pred CCCCCEEeCCCCCCC
Q 041016 652 LKGLKSLNLSYNQLQ 666 (757)
Q Consensus 652 l~~L~~L~Ls~N~l~ 666 (757)
+++|++|++++|.|+
T Consensus 527 mtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 527 MTNLRHLELDGNPFR 541 (565)
T ss_pred ccceeEEEecCCccC
Confidence 666666666666665
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-37 Score=316.71 Aligned_cols=394 Identities=24% Similarity=0.257 Sum_probs=342.7
Q ss_pred cccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCc
Q 041016 67 CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN 146 (757)
Q Consensus 67 c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~ 146 (757)
|.-.-..|+. .++.+++-+ .+.|.+|+ .-+.||+|+|.+.. +....|.++++|+.+++.+|.
T Consensus 52 c~~~lldcs~----~~lea~~~~-------~l~g~lp~------~t~~LdlsnNkl~~-id~~~f~nl~nLq~v~l~~N~ 113 (873)
T KOG4194|consen 52 CNTRLLDCSD----RELEAIDKS-------RLKGFLPS------QTQTLDLSNNKLSH-IDFEFFYNLPNLQEVNLNKNE 113 (873)
T ss_pred CCceeeecCc----ccccccccc-------ccCCcCcc------ceeeeecccccccc-CcHHHHhcCCcceeeeeccch
Confidence 5555666764 234444433 23444443 45789999999984 444789999999999999999
Q ss_pred CCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCcc
Q 041016 147 LNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLS 226 (757)
Q Consensus 147 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 226 (757)
++ .+|...+...+|+.|+|.+|.|+.+..+.+..++.|+.|||+.|.++.+.-..|..-.++++|+|++|.|+..-...
T Consensus 114 Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~ 192 (873)
T KOG4194|consen 114 LT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH 192 (873)
T ss_pred hh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc
Confidence 99 89988888889999999999999999999999999999999999999666667888889999999999999888889
Q ss_pred ccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCc
Q 041016 227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMK 306 (757)
Q Consensus 227 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 306 (757)
|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.---.|.++++|+.|.+..|.+.......|..+.+++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 99999999999999999977778889999999999999999855456789999999999999999987778899999999
Q ss_pred EEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCc
Q 041016 307 SLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNM 385 (757)
Q Consensus 307 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~ 385 (757)
+|+|+.|++.....+.+.+...|+.|+++.|.|...-++.++.+++|+.|++++|+++...+..|..+. |++|.++.|.
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 999999999999999999999999999999999988888899999999999999999988888998887 9999999999
Q ss_pred CCCCCCCCccCCCCCCEEeCcCccccccCCc---ccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccC
Q 041016 386 LTGSLPPPLFESRNLSVLVLSRNNFSGELPE---TIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEF 462 (757)
Q Consensus 386 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 462 (757)
++..-...|..+++|++|||++|.++..+.+ .|.++++|+.|++.+|++..+.-.+|.++..|++|++.+|.+...-
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence 9876666777889999999999999876654 5677999999999999999887889999999999999999998766
Q ss_pred C-CCCCCCcccEEECcCCc
Q 041016 463 P-AFGSDSLVGHVDISSNR 480 (757)
Q Consensus 463 ~-~~~~~~~L~~L~l~~n~ 480 (757)
+ +|..+ .|++|.+..-.
T Consensus 433 ~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 433 PNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred ccccccc-hhhhhhhcccc
Confidence 6 77777 88888776543
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-37 Score=329.92 Aligned_cols=502 Identities=30% Similarity=0.349 Sum_probs=358.3
Q ss_pred eccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccccc
Q 041016 101 VVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVA 180 (757)
Q Consensus 101 ~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 180 (757)
.+|..+..-..++.|+++.|.+. ..|-++..+.-+|+.||+++|.+. ..|..+..+++|+.|+++.|.+. ..|....
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~ 88 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCS 88 (1081)
T ss_pred ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhh
Confidence 34555555556788888888775 444455666666899999988887 78888888888999999888887 4567778
Q ss_pred CCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q 041016 181 GLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITIL 260 (757)
Q Consensus 181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 260 (757)
++.+|+++.|.+|.+. ..|..+..+++|++|++++|++. .+|..+..+..+..+..++|.... .++... ++.+
T Consensus 89 ~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~ 161 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IKKL 161 (1081)
T ss_pred hhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-chhh
Confidence 8888888888888877 68888888888888888888887 777778888888888888883221 222222 7777
Q ss_pred EccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCc
Q 041016 261 ALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVR 340 (757)
Q Consensus 261 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~ 340 (757)
++..|.+.+.++..+..++. .|+|.+|.+. -..+..+.+|+.+....|++...+
T Consensus 162 ~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~--------------------- 215 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE--------------------- 215 (1081)
T ss_pred hhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---------------------
Confidence 88888887777777776666 6788888765 233556667777777766655211
Q ss_pred cCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCC
Q 041016 341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQ 420 (757)
Q Consensus 341 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 420 (757)
-.-++++.|+.++|.++...+ . ....+|+++++++|++++ +|++++.
T Consensus 216 -------~~g~~l~~L~a~~n~l~~~~~-----------------------~--p~p~nl~~~dis~n~l~~-lp~wi~~ 262 (1081)
T KOG0618|consen 216 -------ISGPSLTALYADHNPLTTLDV-----------------------H--PVPLNLQYLDISHNNLSN-LPEWIGA 262 (1081)
T ss_pred -------ecCcchheeeeccCcceeecc-----------------------c--cccccceeeecchhhhhc-chHHHHh
Confidence 122456666666666552211 1 112467777777777763 4577777
Q ss_pred CCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhc---ccEEE
Q 041016 421 STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVT---ILMLS 497 (757)
Q Consensus 421 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---l~~L~ 497 (757)
+.+|+.++..+|+++ .+|..+....+|+.|.+..|.+.-..|......+|+.|++..|++....+..+... +..+.
T Consensus 263 ~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 263 CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 888888888888775 66777777778888888888877555566677888888888888776555333322 55566
Q ss_pred ccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccc
Q 041016 498 LSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG 577 (757)
Q Consensus 498 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 577 (757)
.+.|++.......=..++.|+.|.+.+|.+++..-..+.++..|++|+|++|++.......+.++..|++|++|+|+++
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 6666665333222234567888888888888777777888888999999999888555567888888899999999886
Q ss_pred cCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCE
Q 041016 578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKS 657 (757)
Q Consensus 578 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~ 657 (757)
.+|.++.++..| ++|...+|++. ..| .+..++.|+.
T Consensus 421 ~Lp~tva~~~~L------------------------------------------~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 421 TLPDTVANLGRL------------------------------------------HTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred hhhHHHHhhhhh------------------------------------------HHHhhcCCcee-ech-hhhhcCcceE
Confidence 666777666555 67777888887 566 7888899999
Q ss_pred EeCCCCCCCcc-CCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCC
Q 041016 658 LNLSYNQLQGN-IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQ 722 (757)
Q Consensus 658 L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 722 (757)
+|+|.|+++.. +|..... ++|++||+++|.-.-..-..|..+.++...++.-| .+|++.+
T Consensus 457 lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~~~ 517 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDGNV 517 (1081)
T ss_pred EecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC----CCCcccc
Confidence 99999988754 3443333 78999999999855455566777777777777777 4555533
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-36 Score=323.12 Aligned_cols=480 Identities=28% Similarity=0.315 Sum_probs=313.3
Q ss_pred eCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccc
Q 041016 141 DLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS 220 (757)
Q Consensus 141 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 220 (757)
|++...+. .||..+..-..++.|+++.|.+...+-+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+.
T Consensus 4 d~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 4 DASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred ccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence 34444444 44444444444555555555444322223333334555555555554 45555555556666666666555
Q ss_pred cccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhh
Q 041016 221 GGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF 300 (757)
Q Consensus 221 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 300 (757)
..|.+..++.+|+++.|.+|.+. ..|..+..+++|+.|++++|.+. .+|..+..++.++.+..++|..... ++
T Consensus 82 -~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg 154 (1081)
T KOG0618|consen 82 -SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LG 154 (1081)
T ss_pred -hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hc
Confidence 44455555566666666655554 45555555566666666666555 4555555555555555555511111 11
Q ss_pred ccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEE
Q 041016 301 DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTV 379 (757)
Q Consensus 301 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L 379 (757)
... ++.+++..|.+. +.++..+..+.. .+++++|.+. . ..+..+. ++.+
T Consensus 155 ~~~-ik~~~l~~n~l~------------------------~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l 204 (1081)
T KOG0618|consen 155 QTS-IKKLDLRLNVLG------------------------GSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVL 204 (1081)
T ss_pred ccc-chhhhhhhhhcc------------------------cchhcchhhhhe--eeecccchhh-h--hhhhhccchhhh
Confidence 111 334444443333 333333333333 3555555544 1 1122222 4444
Q ss_pred EcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCccc
Q 041016 380 ILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFS 459 (757)
Q Consensus 380 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 459 (757)
....|++.... ...++++.|+.++|.++...+. .-..+|+++++++|+++ .+|+++..+.+|+.++..+|.++
T Consensus 205 ~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 205 HCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV 277 (1081)
T ss_pred hhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH
Confidence 44444443211 1236899999999998843332 23568999999999999 46699999999999999999996
Q ss_pred ccCCCCCCCCcccEEECcCCccccCCCchh-hhcccEEEccCCccccccchhccCCCC-CCEEeCcCCcccCcchhhccC
Q 041016 460 GEFPAFGSDSLVGHVDISSNRFSGEVPSSF-GVTILMLSLSENKFSGQLPQNLSNLSL-LQHLDLHDNNLTGEFPAFLSQ 537 (757)
Q Consensus 460 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~l~~ 537 (757)
.....+....+|+.+.+..|.+....|..- ...+++|++..|++....+..+..... |..|+.+.|++.......=..
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 443378888899999999999987766554 345999999999998555545555444 788888888887433222223
Q ss_pred CCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeec
Q 041016 538 LSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWK 617 (757)
Q Consensus 538 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 617 (757)
++.|+.|++.+|.++......+.+..+||.|+|++|++.......+.++..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~----------------------------- 408 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE----------------------------- 408 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH-----------------------------
Confidence 678999999999999888888999999999999999987433334444444
Q ss_pred cCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCC-CCC
Q 041016 618 NSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI-PQT 696 (757)
Q Consensus 618 ~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~ 696 (757)
|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|.++... |..
T Consensus 409 -------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 409 -------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred -------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 488999999999 78899999999999999999998 556 7899999999999999998754 333
Q ss_pred ccCCCCCCEEeCCCCc
Q 041016 697 FAKLQQLTSLYLSNNK 712 (757)
Q Consensus 697 l~~l~~L~~L~ls~N~ 712 (757)
.. -+.|++||+++|.
T Consensus 473 ~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 473 LP-SPNLKYLDLSGNT 487 (1081)
T ss_pred CC-CcccceeeccCCc
Confidence 32 3899999999998
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-34 Score=296.33 Aligned_cols=371 Identities=27% Similarity=0.392 Sum_probs=268.2
Q ss_pred CCCCCCEEeCCCCCCCCC-CCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCC
Q 041016 108 RIRSLMTLDLSYNSMQGE-VPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLK 186 (757)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 186 (757)
-++..+-.|+++|.|+|. +| .....++++++|.|....+. .+|+.++.|.+|++|.+++|++. .+...+..++.||
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 356677788889999854 77 77888999999999999988 88999999999999999999887 4456677888888
Q ss_pred EEEccCccCC-ccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016 187 QLILDDNLIQ-GQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN 265 (757)
Q Consensus 187 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 265 (757)
.+++.+|++. .-+|..+-.+..|+.|||++|++. ..|..+..-+++-+|+|++|+|..+....|.+++.|-.|+|++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 8888888864 336777777888888888888887 66777777777778888888877443344567777777777777
Q ss_pred CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016 266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL 345 (757)
Q Consensus 266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 345 (757)
++. .+|+.+..+..|++|.|++|.+.-..-..+..++.|++|.+++.+-+ ...+|.
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-----------------------l~N~Pt 216 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-----------------------LDNIPT 216 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-----------------------hhcCCC
Confidence 776 56666777777777777777665332233334444555555554432 135677
Q ss_pred hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM 425 (757)
Q Consensus 346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 425 (757)
.+..+.+|..+|++.|.+. .+|+.++.+++|+.|+|++|+++.. ....+.-.+|+
T Consensus 217 sld~l~NL~dvDlS~N~Lp------------------------~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lE 271 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLP------------------------IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLE 271 (1255)
T ss_pred chhhhhhhhhccccccCCC------------------------cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhh
Confidence 7777777777777777776 5677777788888888888888743 23344456788
Q ss_pred EEEccCCcccccChHhhhccCCCCEEEccCCcccc-cCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcc
Q 041016 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSG-EFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKF 503 (757)
Q Consensus 426 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l 503 (757)
+|+++.|+++ ..|.+++++++|+.|.+.+|++.- -+| .++.+..|+++..++|.+.
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE--------------------- 329 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE--------------------- 329 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc---------------------
Confidence 8888888887 678888888888888888887652 122 5555555554444444332
Q ss_pred ccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccC
Q 041016 504 SGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT 556 (757)
Q Consensus 504 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 556 (757)
..|+.+..|..|+.|.|+.|++. .+|+++.-++.|+.|++..|.-....|
T Consensus 330 --lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 330 --LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred --cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 56777888888888888888877 678888888888888888887664444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.5e-33 Score=285.43 Aligned_cols=367 Identities=29% Similarity=0.408 Sum_probs=235.3
Q ss_pred CEEEccCCcCc-ccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccC
Q 041016 234 ETLDLQRNSLS-GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGG 312 (757)
Q Consensus 234 ~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 312 (757)
+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.+..
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhc
Confidence 33444444444 234444444444444444444443 34444444444444444444443 1222233444444444444
Q ss_pred CCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCC
Q 041016 313 NKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPP 392 (757)
Q Consensus 313 n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 392 (757)
|++.. .-+|..+..+..|+.||+++|++. ..|.
T Consensus 88 N~LKn-----------------------sGiP~diF~l~dLt~lDLShNqL~------------------------EvP~ 120 (1255)
T KOG0444|consen 88 NNLKN-----------------------SGIPTDIFRLKDLTILDLSHNQLR------------------------EVPT 120 (1255)
T ss_pred ccccc-----------------------CCCCchhcccccceeeecchhhhh------------------------hcch
Confidence 44331 234455555666666666666655 4556
Q ss_pred CccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccc-cCCCCCCCCcc
Q 041016 393 PLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSG-EFPAFGSDSLV 471 (757)
Q Consensus 393 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~~~~~~L 471 (757)
.+...+++-+|+|++|+|..+....|.+++.|-.|||++|++. ..|..+..+..|++|++++|++.- .+..+..+++|
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL 199 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSL 199 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhh
Confidence 6666677777777777776444455667777888888888876 566667778888888888887642 12245556666
Q ss_pred cEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcC
Q 041016 472 GHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTAL 551 (757)
Q Consensus 472 ~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 551 (757)
+.|.+++.+-+ ...+|.++..+.+|..+|+|.|.+. ..|+++-++++|+.|+||+|++
T Consensus 200 ~vLhms~TqRT---------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 200 SVLHMSNTQRT---------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhhhcccccch---------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence 66666665432 1245666777778888888888777 7777777788888888888887
Q ss_pred ccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccccccccc
Q 041016 552 EGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIY 631 (757)
Q Consensus 552 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 631 (757)
+ .+........+|++|++|+|+++ .+|.++..++.|
T Consensus 258 t-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL------------------------------------------ 293 (1255)
T KOG0444|consen 258 T-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL------------------------------------------ 293 (1255)
T ss_pred e-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH------------------------------------------
Confidence 7 34444556677788888888876 667776665554
Q ss_pred CeEECcCCCCCC-cCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCC
Q 041016 632 SLMDLSNNQLSG-EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN 710 (757)
Q Consensus 632 ~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 710 (757)
+.|.+.+|+++- -||+.++.+.+|+++..++|.+. ..|+.+..+..|+.|.|++|++. ..|+++.-++-|+.||+..
T Consensus 294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccC
Confidence 566667777653 37888888888888888888886 77888888888888888888876 5688888888888888888
Q ss_pred CcceecCC
Q 041016 711 NKLSGRIP 718 (757)
Q Consensus 711 N~l~g~iP 718 (757)
|+---..|
T Consensus 372 NpnLVMPP 379 (1255)
T KOG0444|consen 372 NPNLVMPP 379 (1255)
T ss_pred CcCccCCC
Confidence 87543333
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.4e-22 Score=244.15 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=76.1
Q ss_pred CCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccC
Q 041016 421 STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSE 500 (757)
Q Consensus 421 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~ 500 (757)
.++|+.|++++|...+.+|.++.++++|+.|++++|...+.+|....+++|+.|++++|.....+|.. ...++.|++++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~-~~nL~~L~Ls~ 855 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI-STNISDLNLSR 855 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-ccccCEeECCC
Confidence 45666666666665556666666677777777776655555563335666777777766544333321 12355555655
Q ss_pred CccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCc
Q 041016 501 NKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA 550 (757)
Q Consensus 501 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 550 (757)
|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 5554 345566666666666666654333455555666666666666664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.6e-22 Score=243.63 Aligned_cols=146 Identities=24% Similarity=0.264 Sum_probs=62.9
Q ss_pred cceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcC
Q 041016 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSR 407 (757)
Q Consensus 329 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~ 407 (757)
|+.|.+.++.+. .+|..+ ...+|+.|++++|++.. ++..+..+. |+.++++++...+.+|. +..+++|+.|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 444444444332 334433 23455555555555442 222223332 44444444433333332 33444555555555
Q ss_pred ccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCcc
Q 041016 408 NNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRF 481 (757)
Q Consensus 408 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l 481 (757)
|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i 737 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI 737 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc
Confidence 44434444444455555555555443333333332 3444555555554433333321 23344444444444
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=7.8e-26 Score=220.74 Aligned_cols=408 Identities=23% Similarity=0.203 Sum_probs=248.1
Q ss_pred CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC-ccCCccCchhccCCCCCCEEE
Q 041016 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD-NLIQGQIPAEIGNLTNLHKLS 213 (757)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ 213 (757)
+.-+.++|..|.|+...|.+|+.+++|+.||||+|.|+.+.|.+|.++++|-.|-+.+ |+|+....+.|+++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4567788888888877777888888888888888888888888888888877777666 778866666788888888888
Q ss_pred ccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccc
Q 041016 214 LRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG 293 (757)
Q Consensus 214 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 293 (757)
+.-|++.-.....|..+++|..|.+..|.+...-...|..+..++.+.+..|.+... .+++.+... +.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wla~~-~a------ 214 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWLADD-LA------ 214 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----cccchhhhH-Hh------
Confidence 888888777777788888888888888887644334677777788777777763211 111111110 00
Q ss_pred ccchhhhccCCCcEEEccCCCCcCCCcccccCC-cccceeecCCccCccCcc-hhccCCCCCCEEEccCCcccCcccccc
Q 041016 294 EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK-CMLTELSLRSCSVRGSIP-LWLSTQTELTFLDLSENELEGTYPQWL 371 (757)
Q Consensus 294 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~ 371 (757)
..+..++...-..-..+.+.++..++...|... ..+.+=..+.|...+..| ..|..+++|+.|++++|+++++-+.+|
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 011111222222222233333333333333211 011111122233333333 458889999999999999998888888
Q ss_pred cCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccc-----cChHhhhcc
Q 041016 372 SELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG-----HVPKSISNI 445 (757)
Q Consensus 372 ~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~~l~~l 445 (757)
.... +++|.+..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|.+-.|.+.- -..+++.+
T Consensus 295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~- 373 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK- 373 (498)
T ss_pred cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh-
Confidence 8887 8888888888876656667778888888888888888888888888888888888776531 11122211
Q ss_pred CCCCEEEccCCcccccCCCCCCCCcccEEECcCCcccc---CCCch-------hh----hccc-EEEccCCccccccchh
Q 041016 446 YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSG---EVPSS-------FG----VTIL-MLSLSENKFSGQLPQN 510 (757)
Q Consensus 446 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~-------~~----~~l~-~L~l~~n~l~~~~~~~ 510 (757)
+... ..|.-+....++.+.+++..+.. ..|.+ .. .++. +...++..+ ..+|..
T Consensus 374 ----------~~~~-~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l-k~lp~~ 441 (498)
T KOG4237|consen 374 ----------KSVV-GNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL-KLLPRG 441 (498)
T ss_pred ----------CCCC-CCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch-hhcCCC
Confidence 1101 11112222333334443332211 01110 00 0111 222232222 233332
Q ss_pred ccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCC
Q 041016 511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNN 573 (757)
Q Consensus 511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n 573 (757)
+. ..-+++++.+|.++ .+|.. .+.+| .+++++|++.......|.++++|.+|-|++|
T Consensus 442 iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 442 IP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 21 24567777777777 44444 45566 7788888877656667778888888877765
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=8.8e-25 Score=213.45 Aligned_cols=362 Identities=25% Similarity=0.297 Sum_probs=234.6
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccC-CcCCCcccccccCCCCCCEEE
Q 041016 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA-NAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 189 (757)
.-..++|..|.|+ .||..+|+.+++||+||||+|.|+.+-|++|.+++.|..|-+.+ |+|+......|.++..|+.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3456777888887 67778888888888888888888888888888888877666655 888877778888888888888
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc------------ccCcccccCCC--
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS------------GEIPEDIGTLA-- 255 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~l~~l~-- 255 (757)
+.-|++.-...+.|..+++|..|.+..|.+...-..+|..+..++.+.+..|.+- ...|..++...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 8888888777788888888888888888887444447777888888877766521 01111111111
Q ss_pred --------------------CCCEE---EccCCCCCCccc-hhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEcc
Q 041016 256 --------------------NITIL---ALSNNALTGAIP-QSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLG 311 (757)
Q Consensus 256 --------------------~L~~L---~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 311 (757)
.++.+ -.+.+...+..| ..|..+++|++|++++|++++..+.+|.+...+++|+|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 11111 112222333333 457888888888888888888888888888888888888
Q ss_pred CCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCc-----cccccc------------Cc
Q 041016 312 GNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGT-----YPQWLS------------EL 374 (757)
Q Consensus 312 ~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-----~~~~~~------------~~ 374 (757)
.|++..+..+.|.+...|+.|+|.+|+|+...|.+|.....|..|++-.|.+... +-+|+. .-
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~ 386 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPG 386 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCc
Confidence 8888888888888888888888888888888888888888888888877766321 001111 01
Q ss_pred cccEEEcCCCcCCC---CCCCCc---------cCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhh
Q 041016 375 NLGTVILSDNMLTG---SLPPPL---------FESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSI 442 (757)
Q Consensus 375 ~L~~L~l~~n~l~~---~~~~~l---------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 442 (757)
.++.+.+++..+.. ..|+.. ..|+-+.+..=-.|+....+|..+ ....+++++.+|.++ .+|..
T Consensus 387 ~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~-~vp~~- 462 (498)
T KOG4237|consen 387 FVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAIT-SVPDE- 462 (498)
T ss_pred hhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhc-ccCHH-
Confidence 14455555443321 111111 112222222211222222333322 234566777777777 44444
Q ss_pred hccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCC
Q 041016 443 SNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSN 479 (757)
Q Consensus 443 ~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n 479 (757)
.+.+| .+++++|+++..-. .|.+++.+.++-+++|
T Consensus 463 -~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 463 -LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 44566 77777777764333 5566666666665543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=4.2e-20 Score=206.15 Aligned_cols=263 Identities=27% Similarity=0.351 Sum_probs=147.2
Q ss_pred CCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEcc
Q 041016 351 TELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLS 430 (757)
Q Consensus 351 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 430 (757)
..-..|+++.+.++ .+|..+.. .++.|++.+|+++. +|.. .++|++|++++|+++. +|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~~-~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLPA-HITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchhc-CCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 34567888888887 45554432 47777777777763 4432 3667777777777763 3432 3566777777
Q ss_pred CCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchh
Q 041016 431 SNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQN 510 (757)
Q Consensus 431 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~ 510 (757)
+|.+.. +|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++++. |..
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~--~p~~L~~LdLS~N~L~~L-----------------------p~l 320 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLASL-----------------------PAL 320 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCcccc-ccc--cccccceeECCCCccccC-----------------------CCC
Confidence 776652 3332 2356666666666652 232 124455555555555432 111
Q ss_pred ccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccc
Q 041016 511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMI 590 (757)
Q Consensus 511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~ 590 (757)
..+|+.|++++|.+++ +|.. ..+|++|+|++|++++ +|.. .++|+.|++++|.+.+ +|..
T Consensus 321 ---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l-------- 380 (788)
T PRK15387 321 ---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-------- 380 (788)
T ss_pred ---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc--------
Confidence 1234555555555552 3321 1356666666666653 3322 2345556666666542 3321
Q ss_pred cCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCC
Q 041016 591 DTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP 670 (757)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 670 (757)
+..|+.|++++|++++ +|.. .++|+.|++++|++++ +|
T Consensus 381 -------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP 418 (788)
T PRK15387 381 -------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LP 418 (788)
T ss_pred -------------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CC
Confidence 1223566667776663 4432 2456677777777764 44
Q ss_pred cchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016 671 STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719 (757)
Q Consensus 671 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 719 (757)
..+ .+|+.|++++|+++ .+|..+..+++|+.|++++|+|+|.+|.
T Consensus 419 ~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 419 MLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 432 35666777777776 4566677777777777777777776654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.2e-20 Score=206.14 Aligned_cols=263 Identities=27% Similarity=0.351 Sum_probs=167.6
Q ss_pred cceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCc
Q 041016 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRN 408 (757)
Q Consensus 329 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 408 (757)
-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|... ..|++|++++|+++. +|.. .++|+.|++++|
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~lp--~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALP--PELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCCC--CCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence 567999999998 6777665 489999999999985 45421 239999999999984 5543 468999999999
Q ss_pred cccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCch
Q 041016 409 NFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSS 488 (757)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 488 (757)
.++. +|.. .++|+.|++++|+++. +|. ..++|+.|++++|++++ +|.+ ...|+.|++++|++++ +|.
T Consensus 273 ~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~- 339 (788)
T PRK15387 273 PLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPT- 339 (788)
T ss_pred chhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC--cccccccccccCcccc-ccc-
Confidence 9874 4442 3678999999999984 444 24789999999999985 4432 2356677777777764 221
Q ss_pred hhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEE
Q 041016 489 FGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQIL 568 (757)
Q Consensus 489 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 568 (757)
+. .+|++|++++|++++ +|.. ..+|+.|++++|++.+ +|.. ..+|+.|
T Consensus 340 lp------------------------~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~L 387 (788)
T PRK15387 340 LP------------------------SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKEL 387 (788)
T ss_pred cc------------------------cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceE
Confidence 11 245555555555552 3321 2345555555555552 3322 2345666
Q ss_pred ECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCcc
Q 041016 569 DLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSS 648 (757)
Q Consensus 569 ~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~ 648 (757)
++++|++++ +|.. ...++.|++++|++++ +|..
T Consensus 388 dLs~N~Lt~-LP~l---------------------------------------------~s~L~~LdLS~N~Lss-IP~l 420 (788)
T PRK15387 388 IVSGNRLTS-LPVL---------------------------------------------PSELKELMVSGNRLTS-LPML 420 (788)
T ss_pred EecCCcccC-CCCc---------------------------------------------ccCCCEEEccCCcCCC-CCcc
Confidence 666665542 2221 1223556666666653 4432
Q ss_pred ccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCc
Q 041016 649 LGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTF 697 (757)
Q Consensus 649 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 697 (757)
. .+|+.|++++|+++ .+|+.+.++++|+.|+|++|++++..|..+
T Consensus 421 ~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2 34556666666666 456666666666666666666666555444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=1.9e-18 Score=194.51 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=25.2
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCcccce
Q 041016 24 CCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEM 71 (757)
Q Consensus 24 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~g 71 (757)
....+|...+++..+.+. . |... .+.-..|.+.+++|.-..
T Consensus 59 ~~~~~~~~~~~~~~~~l~---~-p~~~---~~~~~~~~~~~~fc~~~~ 99 (754)
T PRK15370 59 TASPEEIKSKFECLRMLA---F-PAYA---DNIQYSRGGADQYCILSE 99 (754)
T ss_pred CCCHHHHHHHHHHHHHhc---C-Cchh---hccccccCCCCcccccCC
Confidence 345677788888888886 2 3111 111234988888996544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=8.5e-19 Score=197.23 Aligned_cols=244 Identities=25% Similarity=0.450 Sum_probs=117.2
Q ss_pred ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccC
Q 041016 376 LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN 455 (757)
Q Consensus 376 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~ 455 (757)
...|+++++.++ .+|..+. ++++.|++++|+++. +|..+. ++|++|++++|+++ .+|..+. .+|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 455666666665 3444332 456666666666663 343332 35666666666665 3344332 2455666666
Q ss_pred CcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhh
Q 041016 456 NSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAF 534 (757)
Q Consensus 456 n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 534 (757)
|.+. .+| .+. .+|+.|++++|+++. +|..+.. +|+.|++++|++++ +|..
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~~------------------------sL~~L~Ls~N~Lt~-LP~~ 301 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKISC-LPENLPE------------------------ELRYLSVYDNSIRT-LPAH 301 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccCc-cccccCC------------------------CCcEEECCCCcccc-Cccc
Confidence 5554 333 221 244555555554442 2333333 45555555555542 3322
Q ss_pred ccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEe
Q 041016 535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIV 614 (757)
Q Consensus 535 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 614 (757)
+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+
T Consensus 302 lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l------------------------------- 344 (754)
T PRK15370 302 LP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL------------------------------- 344 (754)
T ss_pred ch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh-------------------------------
Confidence 21 245555555555552 23222 1355555555555542 22211
Q ss_pred eeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCC
Q 041016 615 NWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694 (757)
Q Consensus 615 ~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 694 (757)
++.|+.|++++|+++ .+|..+. ++|++|+|++|+++. +|..+. .+|+.|++++|+++ .+|
T Consensus 345 -------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 345 -------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLP 404 (754)
T ss_pred -------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCc
Confidence 123355555555555 3444332 355566666665552 333332 24555566666555 233
Q ss_pred CCc----cCCCCCCEEeCCCCcce
Q 041016 695 QTF----AKLQQLTSLYLSNNKLS 714 (757)
Q Consensus 695 ~~l----~~l~~L~~L~ls~N~l~ 714 (757)
..+ ..++.+..|++.+|+++
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 322 22355556666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=6.1e-19 Score=185.14 Aligned_cols=236 Identities=27% Similarity=0.316 Sum_probs=105.4
Q ss_pred cCCCCCCCEEeCCCCcCCCC----cCccccCCCCCCEEEccCCcCCC------cccccccCCCCCCEEEccCccCCccCc
Q 041016 131 FANLTRLTYLDLKDNNLNGS----IPSQLFNLRYLEFLDLSANAIEG------KLSSRVAGLKNLKQLILDDNLIQGQIP 200 (757)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~p 200 (757)
+..+++|++|+++++.++.. ++..+...+.|++++++++.+.+ ..+..+..+++|+.|++++|.+.+..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 33344444444444444321 23333344444444444444431 112233444455555555555443333
Q ss_pred hhccCCCC---CCEEEcccccccc----ccCccccCC-CCCCEEEccCCcCccc----CcccccCCCCCCEEEccCCCCC
Q 041016 201 AEIGNLTN---LHKLSLRQNKFSG----GIPLSLLQL-RKLETLDLQRNSLSGE----IPEDIGTLANITILALSNNALT 268 (757)
Q Consensus 201 ~~~~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 268 (757)
..+..+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 33333332 5555555555442 112223333 4555555555555421 2223344445555555555554
Q ss_pred Cc----cchhhhcCCCCCEEEccCCcccccc----chhhhccCCCcEEEccCCCCcCCCccccc-----CCcccceeecC
Q 041016 269 GA----IPQSIRNMTKLVTLRLDSNVLSGEI----STWLFDLQGMKSLYLGGNKLKWNDNVSIV-----PKCMLTELSLR 335 (757)
Q Consensus 269 ~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~L~ 335 (757)
+. ++..+..+++|++|++++|.+++.. ...+..+++|++|++++|.++......+. ....|++|+++
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 31 2223333445555555555554221 22233445555555555555421111111 12345555555
Q ss_pred CccCcc----CcchhccCCCCCCEEEccCCcccCc
Q 041016 336 SCSVRG----SIPLWLSTQTELTFLDLSENELEGT 366 (757)
Q Consensus 336 ~~~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~ 366 (757)
+|.++. .+...+..+++|+++++++|.+...
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 555431 2334455556777777777777644
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=4.3e-19 Score=186.34 Aligned_cols=281 Identities=25% Similarity=0.285 Sum_probs=169.8
Q ss_pred EEeCCCCcCC-CCcCccccCCCCCCEEEccCCcCCCc----ccccccCCCCCCEEEccCccCCc------cCchhccCCC
Q 041016 139 YLDLKDNNLN-GSIPSQLFNLRYLEFLDLSANAIEGK----LSSRVAGLKNLKQLILDDNLIQG------QIPAEIGNLT 207 (757)
Q Consensus 139 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~ 207 (757)
.|+|..+.++ ...+..+..++.|++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4666777776 34455666778899999999988543 34455677778888888887752 2334566777
Q ss_pred CCCEEEccccccccccCccccCCCC---CCEEEccCCcCcc----cCcccccCC-CCCCEEEccCCCCCCc----cchhh
Q 041016 208 NLHKLSLRQNKFSGGIPLSLLQLRK---LETLDLQRNSLSG----EIPEDIGTL-ANITILALSNNALTGA----IPQSI 275 (757)
Q Consensus 208 ~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l 275 (757)
+|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888876555555544444 8888888777763 222344555 6777777777777632 23345
Q ss_pred hcCCCCCEEEccCCccccc----cchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCC
Q 041016 276 RNMTKLVTLRLDSNVLSGE----ISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT 351 (757)
Q Consensus 276 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 351 (757)
..+++|++|++++|.+++. ++..+..+++|++|++++|.++.... ..+...+..++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~~~~~~ 221 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA--------------------SALAETLASLK 221 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH--------------------HHHHHHhcccC
Confidence 5566777777777776632 22233444566666666665541111 12334456677
Q ss_pred CCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccc----cCCcccCCCCCccEE
Q 041016 352 ELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG----ELPETIGQSTSVMVL 427 (757)
Q Consensus 352 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L 427 (757)
+|++|++++|.+++.....+... ++ ...+.|+.|++++|.++. .+...+..+++|+++
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~---------------~~---~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASA---------------LL---SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHH---------------Hh---ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 88888888887765322211100 00 013466667776666651 222344455777777
Q ss_pred EccCCccccc----ChHhhhcc-CCCCEEEccCCc
Q 041016 428 MLSSNNFSGH----VPKSISNI-YRLLVLDLSNNS 457 (757)
Q Consensus 428 ~L~~n~l~~~----~~~~l~~l-~~L~~L~ls~n~ 457 (757)
++++|.++.. ....+... +.|+.+++.+|+
T Consensus 284 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 284 DLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred ECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 7777777644 33333334 577777777665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7.3e-19 Score=152.49 Aligned_cols=161 Identities=30% Similarity=0.538 Sum_probs=99.6
Q ss_pred CCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEE
Q 041016 134 LTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS 213 (757)
Q Consensus 134 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 213 (757)
+.+.+.|.||+|.++ .+|+.+..+.+|++|++++|+++ .+|..++.+++|++|+++-|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 344445555555555 44445555555555555555554 34555555555555555555555 5666666666666666
Q ss_pred ccccccc-cccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccc
Q 041016 214 LRQNKFS-GGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292 (757)
Q Consensus 214 L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 292 (757)
|.+|.+. ..+|..|..+..|+.|+++.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 6666653 245666666667777777777765 56667777777777777777666 56777777777777777777776
Q ss_pred cccchhhh
Q 041016 293 GEISTWLF 300 (757)
Q Consensus 293 ~~~~~~l~ 300 (757)
.+|..++
T Consensus 187 -vlppel~ 193 (264)
T KOG0617|consen 187 -VLPPELA 193 (264)
T ss_pred -ecChhhh
Confidence 3444444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=8.9e-19 Score=151.98 Aligned_cols=167 Identities=28% Similarity=0.491 Sum_probs=145.7
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCC
Q 041016 105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN 184 (757)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 184 (757)
.++.+.+++.|.||+|+++ .+| ..++.+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. +.|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 4566778888999999997 667 67899999999999999998 88999999999999999999887 78889999999
Q ss_pred CCEEEccCccCC-ccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcc
Q 041016 185 LKQLILDDNLIQ-GQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALS 263 (757)
Q Consensus 185 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 263 (757)
|++|||.+|++. ..+|..|..++.|+.|.|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|++|.+.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 999999999876 357888888999999999999998 78888999999999999999876 678999999999999999
Q ss_pred CCCCCCccchhhhcC
Q 041016 264 NNALTGAIPQSIRNM 278 (757)
Q Consensus 264 ~n~l~~~~~~~l~~l 278 (757)
+|+++ .+|+.++++
T Consensus 182 gnrl~-vlppel~~l 195 (264)
T KOG0617|consen 182 GNRLT-VLPPELANL 195 (264)
T ss_pred cceee-ecChhhhhh
Confidence 99998 677777654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=5.5e-14 Score=158.29 Aligned_cols=154 Identities=27% Similarity=0.459 Sum_probs=92.5
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCc----ccceeeeCCCCCc--ccEEEEEcCCCCCCCC
Q 041016 23 LCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCC----RWEMVRCRSRGPS--QEVTGLDLNNLFPLDS 96 (757)
Q Consensus 23 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~~~~--~~v~~l~L~~~~~~~~ 96 (757)
..+.++|.+||+++|+.+. . + . ..+|.+ ..|| .|.||+|...... .+|+.|+|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~---~-~------~--~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L-------- 425 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG---L-P------L--RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGL-------- 425 (623)
T ss_pred cccCchHHHHHHHHHHhcC---C-c------c--cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEEC--------
Confidence 3456789999999999875 2 2 1 137964 2332 7999999632111 13444544
Q ss_pred cceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccc
Q 041016 97 IVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLS 176 (757)
Q Consensus 97 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 176 (757)
++|.+.|.+| ..+.++++|++|+|++|.++|.+|..++.+++|++|+|++|++.+.+|
T Consensus 426 ---------------------~~n~L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP 483 (623)
T PLN03150 426 ---------------------DNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483 (623)
T ss_pred ---------------------CCCCccccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc
Confidence 4455555555 455555566666666666655556556666666666666666665566
Q ss_pred ccccCCCCCCEEEccCccCCccCchhccCC-CCCCEEEcccccc
Q 041016 177 SRVAGLKNLKQLILDDNLIQGQIPAEIGNL-TNLHKLSLRQNKF 219 (757)
Q Consensus 177 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l 219 (757)
..++++++|++|+|++|.+++.+|..++.. .++..+++.+|..
T Consensus 484 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 484 ESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred hHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 666666666666666666666666665543 3455666666654
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=9e-13 Score=148.53 Aligned_cols=118 Identities=38% Similarity=0.656 Sum_probs=105.3
Q ss_pred cCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCC
Q 041016 631 YSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN 710 (757)
Q Consensus 631 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 710 (757)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|+.+..+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceecCCCCCC--CCCCCCCccccCCCCCCCCCCCCCCCC
Q 041016 711 NKLSGRIPESPQ--MDRQIDPVIYANNSGLCGMQIQVVCPE 749 (757)
Q Consensus 711 N~l~g~iP~~~~--~~~~~~~~~~~gn~~lc~~~l~~~c~~ 749 (757)
|+++|.+|..-. +....... |.||+++||.+-.+.|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C~~ 539 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRACGP 539 (623)
T ss_pred CcccccCChHHhhccccCceEE-ecCCccccCCCCCCCCcc
Confidence 999999997521 22233445 899999999875567853
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.2e-13 Score=142.22 Aligned_cols=194 Identities=30% Similarity=0.475 Sum_probs=130.2
Q ss_pred CCCcccEEECcCCccccCCCchhhh--cccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEE
Q 041016 467 SDSLVGHVDISSNRFSGEVPSSFGV--TILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVL 544 (757)
Q Consensus 467 ~~~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 544 (757)
.+..-...|++.|++.. +|..+.. +++.+.++.|.+. .+|..+.++..|+++||+.|+++ ..|..++.++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 34444567788888763 4444333 3677777777765 56677777788888888888777 5666666555 7777
Q ss_pred EccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccc
Q 041016 545 NLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLS 624 (757)
Q Consensus 545 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 624 (757)
-+++|+++ .+|+.++....|..||.+.|.+. .+|..++.+.++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------------------------- 191 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------------------------- 191 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence 88887776 56767777777777888877775 555555555544
Q ss_pred cccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCc---cCCC
Q 041016 625 SKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTF---AKLQ 701 (757)
Q Consensus 625 ~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~ 701 (757)
+.|.+..|++. ..|+++..| .|..||+|+|+++ .+|-.|.+|+.|++|-|.+|.+.. .|..+ +...
T Consensus 192 -------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVH 260 (722)
T KOG0532|consen 192 -------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVH 260 (722)
T ss_pred -------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhcccee
Confidence 55666677776 556666644 4777888888877 677777888888888888887773 33322 2344
Q ss_pred CCCEEeCCCCc
Q 041016 702 QLTSLYLSNNK 712 (757)
Q Consensus 702 ~L~~L~ls~N~ 712 (757)
--++|+..-|+
T Consensus 261 IFKyL~~qA~q 271 (722)
T KOG0532|consen 261 IFKYLSTQACQ 271 (722)
T ss_pred eeeeecchhcc
Confidence 45677777774
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=6.1e-13 Score=137.11 Aligned_cols=181 Identities=31% Similarity=0.510 Sum_probs=143.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ 187 (757)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 187 (757)
.+..-...||+.|++. .+| ..+..+..|+.+.|..|.+. .+|.++.++..|++|||+.|+++ ..|..++.|+ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp-~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELP-EEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCc-hHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 4555567788888887 777 66777888888888888887 88888888888888888888887 5566666664 888
Q ss_pred EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016 188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL 267 (757)
Q Consensus 188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 267 (757)
|.+++|+++ .+|+.++.+..|.+||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+.. -.|..||++.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCce
Confidence 888888887 67888888888888888888887 67777888888888888888877 55666663 3577888888888
Q ss_pred CCccchhhhcCCCCCEEEccCCccccccchhh
Q 041016 268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWL 299 (757)
Q Consensus 268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 299 (757)
. .+|-.|.+|++|++|.|.+|.++ ..|..+
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 8 77888888888888888888887 344444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=5.3e-11 Score=128.55 Aligned_cols=197 Identities=37% Similarity=0.512 Sum_probs=92.0
Q ss_pred EEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCC-CCCEEeCcCCccc
Q 041016 450 VLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLS-LLQHLDLHDNNLT 528 (757)
Q Consensus 450 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~ 528 (757)
.++...|.+..........+.+..+++.+|.++...+.. ...+ +|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-----------------------~~~~~nL~~L~l~~N~i~ 153 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-----------------------GLLKSNLKELDLSDNKIE 153 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcccc-----------------------ccchhhcccccccccchh
Confidence 466666665444444444455666666666655444332 2232 4555555555554
Q ss_pred CcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccc
Q 041016 529 GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVE 608 (757)
Q Consensus 529 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 608 (757)
.+|..+..+++|+.|++++|++. .++......+.|+.|++++|.+. .+|.....
T Consensus 154 -~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~----------------------- 207 (394)
T COG4886 154 -SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL----------------------- 207 (394)
T ss_pred -hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-----------------------
Confidence 33334444555555555555554 23332334455555555555554 22221100
Q ss_pred cceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCc
Q 041016 609 IQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNS 688 (757)
Q Consensus 609 ~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 688 (757)
+..++++++++|.+. .++..+..+..+..|.+.+|++.. .+..++.+++++.|++++|.
T Consensus 208 -------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 208 -------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred -------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccc
Confidence 112344445555322 333344455555555555555542 23444555555555555555
Q ss_pred CccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016 689 LSGKIPQTFAKLQQLTSLYLSNNKLSGRIP 718 (757)
Q Consensus 689 l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 718 (757)
++...+ +..+.+++.|++++|.++..+|
T Consensus 267 i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 267 ISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccc--ccccCccCEEeccCccccccch
Confidence 553322 4455555555555555544433
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=9.7e-12 Score=118.25 Aligned_cols=61 Identities=31% Similarity=0.380 Sum_probs=44.1
Q ss_pred CCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCccc
Q 041016 513 NLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL 576 (757)
Q Consensus 513 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 576 (757)
..+.|+++|+++|.|+ .+.+.+.-.|.++.|++|+|.+... ..++.+++|+.||+|+|.++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence 3456778888888887 5666667778888888888887632 23777777888888777765
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=9.9e-11 Score=126.46 Aligned_cols=180 Identities=37% Similarity=0.527 Sum_probs=84.8
Q ss_pred CCCCCEEEccCCcCCCcccccccCCC-CCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEE
Q 041016 158 LRYLEFLDLSANAIEGKLSSRVAGLK-NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETL 236 (757)
Q Consensus 158 l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 236 (757)
++.++.|++.+|.+.. ++....... +|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|...+..+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 3444444444444442 222223332 4445555555444 33344555555555555555554 333333344555555
Q ss_pred EccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016 237 DLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 237 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 316 (757)
++++|+++ .+|........|+++.+++|.+. ..+..+.++..+..+.+.+|++.. .+..+..++.++.|++++|.++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence 55555554 33333333444555555555322 233444555555555555555432 1334444555555555555554
Q ss_pred CCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccc
Q 041016 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ 369 (757)
Q Consensus 317 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 369 (757)
.++. ++...+++.|++++|.+....+.
T Consensus 269 -------------------------~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 -------------------------SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -------------------------cccc-ccccCccCEEeccCccccccchh
Confidence 2222 55555666666666666554443
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=6.2e-12 Score=122.69 Aligned_cols=91 Identities=30% Similarity=0.337 Sum_probs=50.0
Q ss_pred cccCCCCCCEEeCCCCCCCCC----CCccccCCCCCCCEEeCCCCc---CCCCcCcc-------ccCCCCCCEEEccCCc
Q 041016 105 PIFRIRSLMTLDLSYNSMQGE----VPGTGFANLTRLTYLDLKDNN---LNGSIPSQ-------LFNLRYLEFLDLSANA 170 (757)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~-------l~~l~~L~~L~Ls~n~ 170 (757)
.+..+.+++.++||+|.|... +. ..+.+.++|+..++++-. ....+|++ +..+++|++||||.|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~-~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIA-KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHH-HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344566777777777776422 22 445666777777777642 11233332 3345566666666666
Q ss_pred CCCccccc----ccCCCCCCEEEccCccCC
Q 041016 171 IEGKLSSR----VAGLKNLKQLILDDNLIQ 196 (757)
Q Consensus 171 l~~~~~~~----~~~l~~L~~L~L~~n~l~ 196 (757)
+....+.. +.++..|++|.|.+|.+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 55333332 244556666666666543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=3e-10 Score=104.50 Aligned_cols=102 Identities=35% Similarity=0.362 Sum_probs=28.2
Q ss_pred CCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhc-cCCCCCCEEEcccccccccc-CccccCCCCCCE
Q 041016 158 LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGI-PLSLLQLRKLET 235 (757)
Q Consensus 158 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~ 235 (757)
+.+|+.|+|++|.++.. +.+..+++|+.|++++|+++.. .+.+ ..+++|++|++++|++...- -..+..+++|++
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 34444444444444422 1234444444444444444422 2222 23445555555555543211 123444555555
Q ss_pred EEccCCcCcccC---cccccCCCCCCEEEc
Q 041016 236 LDLQRNSLSGEI---PEDIGTLANITILAL 262 (757)
Q Consensus 236 L~l~~n~l~~~~---~~~l~~l~~L~~L~L 262 (757)
|++.+|.++... ...+..+++|+.||-
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 555555554210 012345566666553
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=7.1e-11 Score=115.41 Aligned_cols=175 Identities=20% Similarity=0.286 Sum_probs=92.2
Q ss_pred ccCCCCCCEEeCcCcccccc----CCcccCCCCCccEEEccCC---cccccChHh-------hhccCCCCEEEccCCccc
Q 041016 394 LFESRNLSVLVLSRNNFSGE----LPETIGQSTSVMVLMLSSN---NFSGHVPKS-------ISNIYRLLVLDLSNNSFS 459 (757)
Q Consensus 394 l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n---~l~~~~~~~-------l~~l~~L~~L~ls~n~l~ 459 (757)
+.....++.+++++|.+... +...+...+.|+..++++- +....+|.. +..+++|++++||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34456778888888877543 3334555667777777653 222233332 344567777777777665
Q ss_pred ccCC-----CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCc----
Q 041016 460 GEFP-----AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE---- 530 (757)
Q Consensus 460 ~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---- 530 (757)
...+ -+.++..|++|.+.+|.+.-.-...++..+..+. .++ -...-+.|+.+....|++...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNK-------KAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHh-------ccCCCcceEEEEeeccccccccHHH
Confidence 3322 2345666666666666554222222111111111 111 112234566666666665422
Q ss_pred chhhccCCCCCCEEEccCCcCcc----ccCcccCCCCCCCEEECcCCcccc
Q 041016 531 FPAFLSQLSSLQVLNLRNTALEG----SITDGLSNLTSLQILDLSNNNLLG 577 (757)
Q Consensus 531 ~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~ls~n~l~~ 577 (757)
+...|...+.|+.+.++.|.|.. .+...|..+++|+.|||.+|.++.
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 23345556666666666666641 122455666677777777666653
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=4.4e-10 Score=103.40 Aligned_cols=105 Identities=30% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCCEEeCCCCCCCCCCCccccC-CCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 111 SLMTLDLSYNSMQGEVPGTGFA-NLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 111 ~L~~L~Ls~n~l~~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
.+++|+|++|.|+ .|. .++ .+.+|+.|+|++|.++. ++ .+..+++|++|++++|+++...+.....+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3444555555443 221 122 34445555555555442 21 244445555555555554433221112344455555
Q ss_pred ccCccCCcc-CchhccCCCCCCEEEccccccc
Q 041016 190 LDDNLIQGQ-IPAEIGNLTNLHKLSLRQNKFS 220 (757)
Q Consensus 190 L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~ 220 (757)
+++|++... .-..+..+++|++|++.+|.+.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555544321 1123344445555555555443
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.4e-10 Score=116.36 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=32.4
Q ss_pred CCCCccEEEccCCcccccCh-HhhhccCCCCEEEccCCcccccCC---CCCCCCcccEEECcCCcc
Q 041016 420 QSTSVMVLMLSSNNFSGHVP-KSISNIYRLLVLDLSNNSFSGEFP---AFGSDSLVGHVDISSNRF 481 (757)
Q Consensus 420 ~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~---~~~~~~~L~~L~l~~n~l 481 (757)
++.+|+.+.|.+........ .....|++++.||++.|-+..-.+ ....+++|+.|+++.|++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence 35566677776665542111 245566666666666666553222 233444555555555444
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1e-10 Score=117.37 Aligned_cols=207 Identities=21% Similarity=0.215 Sum_probs=97.4
Q ss_pred CCCCCCEEeCCCCcCCCCcC--ccccCCCCCCEEEccCCcCCCccc--ccccCCCCCCEEEccCccCCccCchh-ccCCC
Q 041016 133 NLTRLTYLDLKDNNLNGSIP--SQLFNLRYLEFLDLSANAIEGKLS--SRVAGLKNLKQLILDDNLIQGQIPAE-IGNLT 207 (757)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~ 207 (757)
++++|+.+.|.++.+. ..+ .....|++++.||||+|-+....+ .....+++|+.|+++.|++....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4555555555555544 222 234455566666666555443211 22345556666666666554221111 12345
Q ss_pred CCCEEEccccccccc-cCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCcc-chhhhcCCCCCEEE
Q 041016 208 NLHKLSLRQNKFSGG-IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAI-PQSIRNMTKLVTLR 285 (757)
Q Consensus 208 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 285 (757)
+|+.|.|+.|.++.. +-.....+|+|+.|++..|............+..|+.|+|++|.+-... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 566666666655421 1112234556666666665422222223344555666666666554211 12344555566666
Q ss_pred ccCCcccccc-chh-----hhccCCCcEEEccCCCCc-CCCcccccCCcccceeecCCccCc
Q 041016 286 LDSNVLSGEI-STW-----LFDLQGMKSLYLGGNKLK-WNDNVSIVPKCMLTELSLRSCSVR 340 (757)
Q Consensus 286 L~~n~l~~~~-~~~-----l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~~~~~ 340 (757)
++.+.+...- |+. ...+++|++|++..|++. |-....+....+|+.|.+..+.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6555554221 111 234556666666666653 222333344444555555555443
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=1.6e-09 Score=124.89 Aligned_cols=106 Identities=35% Similarity=0.412 Sum_probs=59.3
Q ss_pred CCCCEEeCCCCc--CCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEE
Q 041016 135 TRLTYLDLKDNN--LNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKL 212 (757)
Q Consensus 135 ~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 212 (757)
++|+.|-+..|. +....++.|..++.|++|||++|.--+.+|..++.+-+||+|+++++.+. .+|..+++++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356666665554 33222223445666666666665555556666666666666666666655 556666666666666
Q ss_pred EccccccccccCccccCCCCCCEEEccCC
Q 041016 213 SLRQNKFSGGIPLSLLQLRKLETLDLQRN 241 (757)
Q Consensus 213 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 241 (757)
++..+.....+|.....+++|++|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 66655544344444455666666665443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.7e-09 Score=124.63 Aligned_cols=153 Identities=24% Similarity=0.314 Sum_probs=110.2
Q ss_pred cCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCc--CCCcccccccCCCCCCEEEccCccCCccCchhccCCCC
Q 041016 131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA--IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTN 208 (757)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 208 (757)
.......|...+-+|.+. .++... .++.|++|-+..|. +.......|..++.|++|||++|.--+.+|..++++-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 344467788888888776 444433 34578888888886 55555556888999999999988766788999999999
Q ss_pred CCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC--CCccchhhhcCCCCCEEEc
Q 041016 209 LHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL--TGAIPQSIRNMTKLVTLRL 286 (757)
Q Consensus 209 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~L 286 (757)
|++|+++++.+. .+|..+.++..|.+|++..+.-...+|.....+.+|++|.+..... +...-..+.++.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999888 7888899999999999888775555566666788888888766542 2222233344444444444
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=7.4e-10 Score=83.65 Aligned_cols=61 Identities=49% Similarity=0.651 Sum_probs=44.4
Q ss_pred CCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcc
Q 041016 653 KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713 (757)
Q Consensus 653 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 713 (757)
++|++|++++|+++...++.|.++++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777766666777777777777777777777777777777777777777764
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=1.9e-10 Score=124.30 Aligned_cols=246 Identities=26% Similarity=0.294 Sum_probs=128.2
Q ss_pred CCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEE
Q 041016 396 ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVD 475 (757)
Q Consensus 396 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ 475 (757)
.+..++.+.+..|.+.. +...+..+++|+.+++.+|.+.... ..+..+++|++|++++|.++ .+..+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccc-cccchhhccchhhhe
Confidence 34555666666666653 2223555666666666666665322 22445556666666666554 233333333344444
Q ss_pred CcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcch-hhccCCCCCCEEEccCCcCccc
Q 041016 476 ISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNLRNTALEGS 554 (757)
Q Consensus 476 l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~ 554 (757)
+++|.++.. ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+..
T Consensus 147 l~~N~i~~~------------------------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~- 200 (414)
T KOG0531|consen 147 LSGNLISDI------------------------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE- 200 (414)
T ss_pred eccCcchhc------------------------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-
Confidence 444444322 223335566666666666653333 1 3445556666666665542
Q ss_pred cCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccccccc--ccC
Q 041016 555 ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA--IYS 632 (757)
Q Consensus 555 ~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~l~ 632 (757)
...+..+..+..+++..|.++..-+... .. +++
T Consensus 201 -i~~~~~~~~l~~~~l~~n~i~~~~~l~~--------------------------------------------~~~~~L~ 235 (414)
T KOG0531|consen 201 -IEGLDLLKKLVLLSLLDNKISKLEGLNE--------------------------------------------LVMLHLR 235 (414)
T ss_pred -ccchHHHHHHHHhhcccccceeccCccc--------------------------------------------chhHHHH
Confidence 2223333344444555555542211100 01 145
Q ss_pred eEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccC---CCCC-ccCCCCCCEEeC
Q 041016 633 LMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGK---IPQT-FAKLQQLTSLYL 708 (757)
Q Consensus 633 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~l 708 (757)
.+++++|.+. .++..+..+..+..|+++.|++... ..+.....+..+..+.|.+... .... ....+.++..++
T Consensus 236 ~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (414)
T KOG0531|consen 236 ELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTL 312 (414)
T ss_pred HHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccccc
Confidence 6677777766 3335566667777777777777654 3455556666666666665522 1111 445567777777
Q ss_pred CCCcceecCC
Q 041016 709 SNNKLSGRIP 718 (757)
Q Consensus 709 s~N~l~g~iP 718 (757)
.+|+.....+
T Consensus 313 ~~~~~~~~~~ 322 (414)
T KOG0531|consen 313 ELNPIRKISS 322 (414)
T ss_pred ccCccccccc
Confidence 7777766544
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=5.4e-10 Score=106.57 Aligned_cols=130 Identities=25% Similarity=0.261 Sum_probs=77.0
Q ss_pred CCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccC
Q 041016 421 STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSE 500 (757)
Q Consensus 421 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~ 500 (757)
.+.|+++|+++|.|+ .+.++..-.+.++.|++++|.+. .+..+..+++|+.||+++|.++...
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls~~~--------------- 345 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLAECV--------------- 345 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhHhhh---------------
Confidence 345677777777766 45556666677777777777665 3334556666666666666554221
Q ss_pred CccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcccc-CcccCCCCCCCEEECcCCcccc
Q 041016 501 NKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI-TDGLSNLTSLQILDLSNNNLLG 577 (757)
Q Consensus 501 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~ 577 (757)
.+-.++-+.+.|.+++|.+. .-..+..+-+|..||+++|+|...- ...++++|.|+++.+.+|++.+
T Consensus 346 --------Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 346 --------GWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred --------hhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 11223445556666666554 1233455566666666666665322 2456777777777777777764
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=7.3e-10 Score=119.76 Aligned_cols=200 Identities=29% Similarity=0.305 Sum_probs=95.7
Q ss_pred CCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016 132 ANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK 211 (757)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 211 (757)
..+..++.+++..|.+. .+-..+..+++|+.|++..|.+..+.. .+..+++|++|++++|.|+.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhh
Confidence 34556666666666665 233345556666666666666553321 144455555555555555432 12334444555
Q ss_pred EEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccc-hhhhcCCCCCEEEccCCc
Q 041016 212 LSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP-QSIRNMTKLVTLRLDSNV 290 (757)
Q Consensus 212 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~ 290 (757)
|++++|.+. .. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.
T Consensus 145 L~l~~N~i~------------------------~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 145 LNLSGNLIS------------------------DI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred heeccCcch------------------------hc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 555555544 22 223334444444444444443222 1 3444455555555555
Q ss_pred cccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccC
Q 041016 291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEG 365 (757)
Q Consensus 291 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 365 (757)
+.. ...+..+..+..+++..|.++............|+.++++++++.. .+..+..+..+..+++..|++..
T Consensus 198 i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 198 IRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred hhc--ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc
Confidence 431 1222233333334555555543332222222235555666655542 22445566777777777777653
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=3.2e-09 Score=80.14 Aligned_cols=61 Identities=43% Similarity=0.571 Sum_probs=56.8
Q ss_pred cccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcC
Q 041016 629 AIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL 689 (757)
Q Consensus 629 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 689 (757)
++|+.|++++|+++...+..|.++++|++|++++|+++...|++|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3578999999999977778999999999999999999999999999999999999999985
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.75 E-value=1.1e-08 Score=70.39 Aligned_cols=40 Identities=43% Similarity=0.783 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCC--CCCcccceeeeC
Q 041016 27 EDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSS--SDCCRWEMVRCR 75 (757)
Q Consensus 27 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~ 75 (757)
++|++||++||+++. .++ .+.+.+|+.. .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~---~~~------~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLN---NDP------SGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT----SC-------CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcc---ccc------CcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999998 333 4678999976 799999999995
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=1.8e-09 Score=114.79 Aligned_cols=181 Identities=25% Similarity=0.277 Sum_probs=101.3
Q ss_pred cccccCCCCCCEEeCCCCCCCCCCCccccCCC-CCCCEEeCCCCc--CCCCcCccccC------CCCCCEEEccCCcCCC
Q 041016 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANL-TRLTYLDLKDNN--LNGSIPSQLFN------LRYLEFLDLSANAIEG 173 (757)
Q Consensus 103 ~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l-~~L~~L~Ls~n~--l~~~~p~~l~~------l~~L~~L~Ls~n~l~~ 173 (757)
|-.++.|++|++|.|.++.+... ..+..+ .+|++|-.++.- +...+....+. --.|.+.+.++|++.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 44677888888888888877521 112111 234444333210 00011111111 124556666677665
Q ss_pred cccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccC
Q 041016 174 KLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT 253 (757)
Q Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 253 (757)
....++.-++.|+.|+|++|+++.. +.+..|++|++|||++|.+....--....+. |+.|.+++|.++.. ..+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence 4455566667777777777777643 3666777777777777777632222233333 77777777776543 35667
Q ss_pred CCCCCEEEccCCCCCCcc-chhhhcCCCCCEEEccCCccc
Q 041016 254 LANITILALSNNALTGAI-PQSIRNMTKLVTLRLDSNVLS 292 (757)
Q Consensus 254 l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 292 (757)
+.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+-
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 777777777777665421 122344556666677766654
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.4e-08 Score=95.63 Aligned_cols=174 Identities=24% Similarity=0.185 Sum_probs=114.5
Q ss_pred CCCEEeCcCcccccc-CCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC---CCCCCCcccEE
Q 041016 399 NLSVLVLSRNNFSGE-LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP---AFGSDSLVGHV 474 (757)
Q Consensus 399 ~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~---~~~~~~~L~~L 474 (757)
.|+.+||++..++.. ....+..|.+|+.|.+.++++.+.+...+.+-.+|+.++++.+.=-.... .+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666655422 11234456777777777777777777777777777777777664222222 35667777777
Q ss_pred ECcCCccccCCCc----hhhhcccEEEccCCccc---cccchhccCCCCCCEEeCcCCc-ccCcchhhccCCCCCCEEEc
Q 041016 475 DISSNRFSGEVPS----SFGVTILMLSLSENKFS---GQLPQNLSNLSLLQHLDLHDNN-LTGEFPAFLSQLSSLQVLNL 546 (757)
Q Consensus 475 ~l~~n~l~~~~~~----~~~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L 546 (757)
+++.|.+...... .+...++.|+++++.-. ..+..-...|++|.+|||++|. ++...-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777766544322 23344777887766421 1122234679999999999985 55555556778999999999
Q ss_pred cCCcCccccCc---ccCCCCCCCEEECcCCc
Q 041016 547 RNTALEGSITD---GLSNLTSLQILDLSNNN 574 (757)
Q Consensus 547 s~n~l~~~~~~---~l~~l~~L~~L~ls~n~ 574 (757)
+.|.. ++|+ .+...++|.+||+.++-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 99985 3554 46778999999998763
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1e-08 Score=98.12 Aligned_cols=175 Identities=19% Similarity=0.150 Sum_probs=75.5
Q ss_pred CCEEeCCCCcCCC-CcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCcc-CCcc-CchhccCCCCCCEEE
Q 041016 137 LTYLDLKDNNLNG-SIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQ-IPAEIGNLTNLHKLS 213 (757)
Q Consensus 137 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~ 213 (757)
|++||||+..|+. .+-.-+..|++|+.|.|.++++...+...++.-.+|+.|+++.+. ++.. ..--+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4455555444431 111123344455555555555544444444555555555555443 2110 011244555555555
Q ss_pred ccccccccccCcc-ccC-CCCCCEEEccCCc--Cc-ccCcccccCCCCCCEEEccCCC-CCCccchhhhcCCCCCEEEcc
Q 041016 214 LRQNKFSGGIPLS-LLQ-LRKLETLDLQRNS--LS-GEIPEDIGTLANITILALSNNA-LTGAIPQSIRNMTKLVTLRLD 287 (757)
Q Consensus 214 L~~n~l~~~~~~~-l~~-l~~L~~L~l~~n~--l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~ 287 (757)
+++|.+....... +.. -.+|+.|+++++. +. ..+..-...+++|.+|||++|. ++......|.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 5555543221111 111 1345555555443 10 0111112345556666665542 333333445555566666665
Q ss_pred CCccccccchh---hhccCCCcEEEccCC
Q 041016 288 SNVLSGEISTW---LFDLQGMKSLYLGGN 313 (757)
Q Consensus 288 ~n~l~~~~~~~---l~~l~~L~~L~L~~n 313 (757)
.|.. .+|.. +...+.|.+|++.++
T Consensus 347 RCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcC--CChHHeeeeccCcceEEEEeccc
Confidence 5542 23332 334455555555443
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=2.3e-08 Score=106.63 Aligned_cols=178 Identities=29% Similarity=0.365 Sum_probs=121.2
Q ss_pred cccCCCCCCCEEeCCCCcCCCCcCccccCC-CCCCEEEccCCcCC---Ccccc---ccc---CCCCCCEEEccCccCCcc
Q 041016 129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNL-RYLEFLDLSANAIE---GKLSS---RVA---GLKNLKQLILDDNLIQGQ 198 (757)
Q Consensus 129 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~---~~~~~---~~~---~l~~L~~L~L~~n~l~~~ 198 (757)
-.+..+++||+|.|.++.+.. ...+..+ ..|+.|.- +|.+. ..+.. .++ ...+|.+.+.++|.+. .
T Consensus 103 i~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred ceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 456778889999999988763 1112111 12333322 22211 00000 011 1235778888899887 5
Q ss_pred CchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCccc-ccCCCCCCEEEccCCCCCCccchhhhc
Q 041016 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED-IGTLANITILALSNNALTGAIPQSIRN 277 (757)
Q Consensus 199 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~ 277 (757)
+..++.-++.|+.|+|++|+++... .+..+++|++||+++|.++ .+|.. ...+ .|+.|.+++|.++.. ..+.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHh
Confidence 6677888899999999999997543 7888999999999999987 34432 2233 499999999988743 46788
Q ss_pred CCCCCEEEccCCcccccc-chhhhccCCCcEEEccCCCCc
Q 041016 278 MTKLVTLRLDSNVLSGEI-STWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 278 l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 316 (757)
+.+|+.||+++|-+.+.- -..++.+..|+.|+|.+|.+-
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 899999999999876532 233567788889999999875
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=4.4e-07 Score=85.93 Aligned_cols=88 Identities=25% Similarity=0.326 Sum_probs=44.9
Q ss_pred cCCCCCCEEeCCCCCCCCC----CCccccCCCCCCCEEeCCCCcCC---CCcCc-------cccCCCCCCEEEccCCcCC
Q 041016 107 FRIRSLMTLDLSYNSMQGE----VPGTGFANLTRLTYLDLKDNNLN---GSIPS-------QLFNLRYLEFLDLSANAIE 172 (757)
Q Consensus 107 ~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L~~L~Ls~n~l~---~~~p~-------~l~~l~~L~~L~Ls~n~l~ 172 (757)
..+..+..+|||+|.|... +. ..+++-++|+..+++.-... ..++. ++-+|++|+..+||.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~-~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELC-NVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHH-HHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3466777778887777532 11 34555667777777654221 12222 2345555555555555554
Q ss_pred Cccccc----ccCCCCCCEEEccCccC
Q 041016 173 GKLSSR----VAGLKNLKQLILDDNLI 195 (757)
Q Consensus 173 ~~~~~~----~~~l~~L~~L~L~~n~l 195 (757)
...|.. +++-+.|.+|.+++|.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC
Confidence 433322 23444455555554443
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=1.4e-07 Score=79.90 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=51.0
Q ss_pred ccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCC
Q 041016 630 IYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLS 709 (757)
Q Consensus 630 ~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 709 (757)
..+.+++++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.. +|..+---+..-..++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhc
Confidence 3355666666666 56666666677777777777666 445555556666666666666653 33222222223333456
Q ss_pred CCcceecCCCCCC
Q 041016 710 NNKLSGRIPESPQ 722 (757)
Q Consensus 710 ~N~l~g~iP~~~~ 722 (757)
++++.+.-|.++|
T Consensus 155 nepl~~~~~~klq 167 (177)
T KOG4579|consen 155 NEPLGDETKKKLQ 167 (177)
T ss_pred CCcccccCccccc
Confidence 6666665555543
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.6e-05 Score=82.52 Aligned_cols=66 Identities=14% Similarity=0.248 Sum_probs=36.5
Q ss_pred ccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcc
Q 041016 511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSS 582 (757)
Q Consensus 511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~ 582 (757)
+..+.+++.|++++|.++ .+|. -.++|++|.+++|.-...+|+.+ .++|+.|++++|.....+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 344566677777777665 3441 12357777776655444555444 246777777776332344443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=2.3e-06 Score=82.31 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=47.2
Q ss_pred CCCCEEeCcCcccccc-CCcccCCCCCccEEEccCCcccccC-hHhhhccCCCCEEEccCCcccccCC-------CCCCC
Q 041016 398 RNLSVLVLSRNNFSGE-LPETIGQSTSVMVLMLSSNNFSGHV-PKSISNIYRLLVLDLSNNSFSGEFP-------AFGSD 468 (757)
Q Consensus 398 ~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~-------~~~~~ 468 (757)
+++..+.+..|.+... ..+.+..++.+..|+|+.|++.... -+.+.++++|..|.++++++...+. -++.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 4566666666655432 2234445666667777777765321 2456677778888888877764433 24556
Q ss_pred CcccEEECc
Q 041016 469 SLVGHVDIS 477 (757)
Q Consensus 469 ~~L~~L~l~ 477 (757)
++++.|+=+
T Consensus 279 ~~v~vLNGs 287 (418)
T KOG2982|consen 279 TKVQVLNGS 287 (418)
T ss_pred cceEEecCc
Confidence 666665543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=4.4e-07 Score=76.96 Aligned_cols=82 Identities=24% Similarity=0.320 Sum_probs=34.9
Q ss_pred CCEEeCCCCCCCCCCCc--cccCCCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 041016 112 LMTLDLSYNSMQGEVPG--TGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL 188 (757)
Q Consensus 112 L~~L~Ls~n~l~~~i~~--~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 188 (757)
+..+||++|.+. .+++ ..+.+...|+..+|++|.+. .+|..|. +.+.++.|+|++|.++ .+|..++.++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 445566666553 2331 11223344444555555555 3343332 2334444444444444 222224444444444
Q ss_pred EccCccCC
Q 041016 189 ILDDNLIQ 196 (757)
Q Consensus 189 ~L~~n~l~ 196 (757)
+++.|.+.
T Consensus 106 Nl~~N~l~ 113 (177)
T KOG4579|consen 106 NLRFNPLN 113 (177)
T ss_pred ccccCccc
Confidence 44444433
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.88 E-value=1.2e-05 Score=76.41 Aligned_cols=90 Identities=23% Similarity=0.340 Sum_probs=56.5
Q ss_pred cCCCCCCCEEeCCCCcCCCCc----CccccCCCCCCEEEccCCcCC---Cccc-------ccccCCCCCCEEEccCccCC
Q 041016 131 FANLTRLTYLDLKDNNLNGSI----PSQLFNLRYLEFLDLSANAIE---GKLS-------SRVAGLKNLKQLILDDNLIQ 196 (757)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~---~~~~-------~~~~~l~~L~~L~L~~n~l~ 196 (757)
+.-+..++.++||+|.|...- ...+.+-.+|+..+++.-... ..++ .++.+|++|+..+||+|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 445788888999999887433 334555677888777753221 1122 23456777777777777776
Q ss_pred ccCchh----ccCCCCCCEEEccccccc
Q 041016 197 GQIPAE----IGNLTNLHKLSLRQNKFS 220 (757)
Q Consensus 197 ~~~p~~----~~~l~~L~~L~L~~n~l~ 220 (757)
...|.. +++-+.|++|.+++|.+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCC
Confidence 555543 345566777777777653
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.6e-05 Score=54.70 Aligned_cols=36 Identities=44% Similarity=0.647 Sum_probs=19.2
Q ss_pred CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCC
Q 041016 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIE 172 (757)
Q Consensus 136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 172 (757)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44445555555555555555554
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=5e-06 Score=80.04 Aligned_cols=106 Identities=29% Similarity=0.385 Sum_probs=57.9
Q ss_pred CCCEEEccCccCCccCc-hhc-cCCCCCCEEEcccccccc--ccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCE
Q 041016 184 NLKQLILDDNLIQGQIP-AEI-GNLTNLHKLSLRQNKFSG--GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITI 259 (757)
Q Consensus 184 ~L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 259 (757)
.++.|.+.++.+..... ..| ..++.++++||.+|.++. .+...+.++|.|++|+++.|++...+...-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44455555655542211 112 235677788888887753 23334567777777777777776443222135566777
Q ss_pred EEccCCCCCCc-cchhhhcCCCCCEEEccCC
Q 041016 260 LALSNNALTGA-IPQSIRNMTKLVTLRLDSN 289 (757)
Q Consensus 260 L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n 289 (757)
|-|.+..+.-. ....+..++.+++|.++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 77766655422 1223344555555555555
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=2.8e-05 Score=53.46 Aligned_cols=36 Identities=47% Similarity=0.710 Sum_probs=16.8
Q ss_pred CCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCc
Q 041016 654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS 690 (757)
Q Consensus 654 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 690 (757)
+|++|++++|+|+. +|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 44555555555552 2333555555555555555554
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.65 E-value=0.00013 Score=64.83 Aligned_cols=108 Identities=14% Similarity=0.200 Sum_probs=42.4
Q ss_pred CccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCC
Q 041016 127 PGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNL 206 (757)
Q Consensus 127 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 206 (757)
+..+|.++++|+.+.+.. .+...-..+|..+++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 334566666666666653 344333444555555665555553 4444444455555555555543 2222333345555
Q ss_pred CCCCEEEccccccccccCccccCCCCCCEEEcc
Q 041016 207 TNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQ 239 (757)
Q Consensus 207 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 239 (757)
++|+.+++..+ +.......|.++ +|+.+.+.
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555555443 322233334443 45554444
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00031 Score=73.14 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=23.1
Q ss_pred ccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCC
Q 041016 444 NIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSEN 501 (757)
Q Consensus 444 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n 501 (757)
.+.+++.|++++|.++ .+|. -..+|+.|.+++|.-....|..++..|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 3455555555555433 2221 12235555555433323333333333444444444
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00018 Score=65.88 Aligned_cols=58 Identities=36% Similarity=0.379 Sum_probs=25.6
Q ss_pred CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccC
Q 041016 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLI 195 (757)
Q Consensus 136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 195 (757)
+...+||++|.+.. + ..|..++.|.+|.|++|+|+.+.|.--..+++|+.|.|.+|.+
T Consensus 43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 44455555555441 1 1233444444555555544444333333334444444444443
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.46 E-value=0.00036 Score=61.86 Aligned_cols=106 Identities=12% Similarity=0.197 Sum_probs=44.3
Q ss_pred ccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCC
Q 041016 153 SQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRK 232 (757)
Q Consensus 153 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 232 (757)
.+|.++++|+.+.+.. .+..+....|.++++|+.+.+.++ +.......|.++++|+.+.+.. .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455666666666653 344455555666666666666554 4434444555555566666644 322233334445555
Q ss_pred CCEEEccCCcCcccCcccccCCCCCCEEEcc
Q 041016 233 LETLDLQRNSLSGEIPEDIGTLANITILALS 263 (757)
Q Consensus 233 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 263 (757)
|+.+++..+ +.......|.+. +|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 555555443 332223334443 45555444
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=3.8e-05 Score=86.87 Aligned_cols=138 Identities=25% Similarity=0.334 Sum_probs=83.1
Q ss_pred CCCCEEeCCCCcCC-CCcCcccc-CCCCCCEEEccCCcCCCc-ccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016 135 TRLTYLDLKDNNLN-GSIPSQLF-NLRYLEFLDLSANAIEGK-LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK 211 (757)
Q Consensus 135 ~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 211 (757)
.+|++||+++...- ...|..++ .+|+|+.|.+++-.+... ......++++|..||+|+++++.. .+++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56777777765332 22333343 467777777777554322 223346777777888887777643 56777777777
Q ss_pred EEcccccccc-ccCccccCCCCCCEEEccCCcCcccC--c----ccccCCCCCCEEEccCCCCCCccchh
Q 041016 212 LSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEI--P----EDIGTLANITILALSNNALTGAIPQS 274 (757)
Q Consensus 212 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~ 274 (757)
|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..+++|+.||.+++.+...+-+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 7777665542 12234567788888888765533211 1 11234778888888887776544433
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00028 Score=64.62 Aligned_cols=84 Identities=25% Similarity=0.264 Sum_probs=61.0
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcc-cccccCCCCCCEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL-SSRVAGLKNLKQL 188 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 188 (757)
.....+||++|.+.. + ..|..++.|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|++.... -.-+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~-l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-L--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh-c--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 456789999999863 3 44788999999999999999666655556788999999999987431 1224455566666
Q ss_pred EccCccCC
Q 041016 189 ILDDNLIQ 196 (757)
Q Consensus 189 ~L~~n~l~ 196 (757)
.+-+|.++
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 66555544
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.35 E-value=6.1e-05 Score=85.25 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=89.6
Q ss_pred CCCCEEEccCCcCCC-ccccc-ccCCCCCCEEEccCccCCcc-CchhccCCCCCCEEEccccccccccCccccCCCCCCE
Q 041016 159 RYLEFLDLSANAIEG-KLSSR-VAGLKNLKQLILDDNLIQGQ-IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLET 235 (757)
Q Consensus 159 ~~L~~L~Ls~n~l~~-~~~~~-~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 235 (757)
.+|++||+++...-. .-+.. -..+|.|+.|.+.+-.+... .-....++++|..||+|++.++.. .+++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 567888887754321 11122 24578888888877665422 123356778888888888887633 56777888888
Q ss_pred EEccCCcCcc-cCcccccCCCCCCEEEccCCCCCCcc--c----hhhhcCCCCCEEEccCCccccccchhh-hccCCCcE
Q 041016 236 LDLQRNSLSG-EIPEDIGTLANITILALSNNALTGAI--P----QSIRNMTKLVTLRLDSNVLSGEISTWL-FDLQGMKS 307 (757)
Q Consensus 236 L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~ 307 (757)
|.+.+-.+.. ..-..+.++++|++||+|........ . +.-..++.|+.||.++..+.+.+-+.+ ...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8777665543 22235677888888888876544221 1 122346788888888777765443332 23444444
Q ss_pred E
Q 041016 308 L 308 (757)
Q Consensus 308 L 308 (757)
+
T Consensus 280 i 280 (699)
T KOG3665|consen 280 I 280 (699)
T ss_pred h
Confidence 3
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.00032 Score=67.15 Aligned_cols=63 Identities=27% Similarity=0.339 Sum_probs=36.4
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCC--cCCCCcCccccCCCCCCEEEccCCcCC
Q 041016 107 FRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN--NLNGSIPSQLFNLRYLEFLDLSANAIE 172 (757)
Q Consensus 107 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 172 (757)
-.+..|+.|++.+..++.. ..|-.+++|++|.++.| .+++.++.-...+++|++|++++|++.
T Consensus 40 d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444555555555555421 33556677777777777 455444444455566666666666665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00073 Score=64.78 Aligned_cols=64 Identities=28% Similarity=0.314 Sum_probs=29.9
Q ss_pred cCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCC--cCCCcccccccCCCCCCEEEccCccCC
Q 041016 131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN--AIEGKLSSRVAGLKNLKQLILDDNLIQ 196 (757)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (757)
...+..|+.|++.+..++.. ..+-.|++|++|.+|.| ++.+.++.....+++|+++++++|++.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34445555555555555421 23344555555555555 333333333333344555555544443
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.40 E-value=0.00033 Score=71.19 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=9.5
Q ss_pred cCCCCCCEEEccCCc
Q 041016 348 STQTELTFLDLSENE 362 (757)
Q Consensus 348 ~~~~~L~~L~l~~n~ 362 (757)
.++.+|+.+.++.++
T Consensus 317 ~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQ 331 (483)
T ss_pred cCCCceEEEeccccc
Confidence 345667777776665
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.35 E-value=0.00017 Score=73.19 Aligned_cols=131 Identities=18% Similarity=0.074 Sum_probs=63.6
Q ss_pred CCCCCCEEEccCCcccCcccc-cccCc--cccEEEcCCCc-CCCCCCCCcc-CCCCCCEEeCcCcccccc--CCcccCCC
Q 041016 349 TQTELTFLDLSENELEGTYPQ-WLSEL--NLGTVILSDNM-LTGSLPPPLF-ESRNLSVLVLSRNNFSGE--LPETIGQS 421 (757)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~~~~-~~~~~--~L~~L~l~~n~-l~~~~~~~l~-~~~~L~~L~L~~n~l~~~--~~~~~~~~ 421 (757)
.+..|+.++.+++...+..+- .++.- .|+.+.+..++ ++..--..++ +++.|+.+++..+..... +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 456777777776654333222 22221 26677766664 2222112222 346667777666643211 22222346
Q ss_pred CCccEEEccCCcccccC-----hHhhhccCCCCEEEccCCcccccCC--CCCCCCcccEEECcCC
Q 041016 422 TSVMVLMLSSNNFSGHV-----PKSISNIYRLLVLDLSNNSFSGEFP--AFGSDSLVGHVDISSN 479 (757)
Q Consensus 422 ~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~ls~n~l~~~~~--~~~~~~~L~~L~l~~n 479 (757)
+.|+.+.++++...... ...-..+..|+.+.+++++...... .+..+++|+.+++-++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 66777777766432111 1111334556666666666543222 4455555555555544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.00053 Score=65.87 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=40.4
Q ss_pred CCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccccc-chhhhccCCCcEEE
Q 041016 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEI-STWLFDLQGMKSLY 309 (757)
Q Consensus 231 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 309 (757)
.+.++|++.++.++.+ .....++.|++|.|+-|.++.. ..+..|++|++|+|..|.+.... -..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455566666655432 2234556666666666666533 23455556666666655554221 12334455555555
Q ss_pred ccCCC
Q 041016 310 LGGNK 314 (757)
Q Consensus 310 L~~n~ 314 (757)
|..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 44444
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.64 E-value=0.0014 Score=73.08 Aligned_cols=63 Identities=21% Similarity=0.117 Sum_probs=30.0
Q ss_pred cCCCCCCEEEccCcc-CCccCchhccC-CCCCCEEEccccc-cccccC-ccccCCCCCCEEEccCCc
Q 041016 180 AGLKNLKQLILDDNL-IQGQIPAEIGN-LTNLHKLSLRQNK-FSGGIP-LSLLQLRKLETLDLQRNS 242 (757)
Q Consensus 180 ~~l~~L~~L~L~~n~-l~~~~p~~~~~-l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~ 242 (757)
..+++|+.|+++.+. ++...-..++. +++|++|.+.+|. ++...- .....++.|++|+++++.
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 344555566665555 33333233332 5566666655554 332211 112345556666666554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.00049 Score=66.04 Aligned_cols=98 Identities=29% Similarity=0.285 Sum_probs=49.8
Q ss_pred CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccC-chhccCCCCCCEEEc
Q 041016 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI-PAEIGNLTNLHKLSL 214 (757)
Q Consensus 136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L 214 (757)
+.+.|++-++.++++ ....+|+.|++|.||-|+|+.. ..+..|++|+.|+|..|.|...- -.-+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 334444444444422 1223445555555555554432 22445555555555555554221 122456777777777
Q ss_pred cccccccccCc-----cccCCCCCCEEE
Q 041016 215 RQNKFSGGIPL-----SLLQLRKLETLD 237 (757)
Q Consensus 215 ~~n~l~~~~~~-----~l~~l~~L~~L~ 237 (757)
..|.-.+.-+. .+.-+++|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77766554443 244567777775
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.05 E-value=0.0068 Score=34.52 Aligned_cols=12 Identities=50% Similarity=0.562 Sum_probs=5.2
Q ss_pred CCEEeCCCCCCC
Q 041016 655 LKSLNLSYNQLQ 666 (757)
Q Consensus 655 L~~L~Ls~N~l~ 666 (757)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.68 E-value=0.013 Score=33.35 Aligned_cols=18 Identities=67% Similarity=1.016 Sum_probs=8.7
Q ss_pred CCEEeCCCCcCCCCcCccc
Q 041016 137 LTYLDLKDNNLNGSIPSQL 155 (757)
Q Consensus 137 L~~L~Ls~n~l~~~~p~~l 155 (757)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 444443
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.42 E-value=0.0051 Score=68.49 Aligned_cols=131 Identities=22% Similarity=0.120 Sum_probs=72.1
Q ss_pred CCCCCCEEEccCCcCCCc--ccccccCCCCCCEEEccCc-cCCccC----chhccCCCCCCEEEccccc-cccccCcccc
Q 041016 157 NLRYLEFLDLSANAIEGK--LSSRVAGLKNLKQLILDDN-LIQGQI----PAEIGNLTNLHKLSLRQNK-FSGGIPLSLL 228 (757)
Q Consensus 157 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 228 (757)
.++.|+.|.+..+.-... .......+++|+.|+++++ ...... ......+.+|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666666543222 2334456677777777762 111111 1223456778888888877 4433333333
Q ss_pred -CCCCCCEEEccCCc-CcccCcc-cccCCCCCCEEEccCCCCCC--ccchhhhcCCCCCEEEcc
Q 041016 229 -QLRKLETLDLQRNS-LSGEIPE-DIGTLANITILALSNNALTG--AIPQSIRNMTKLVTLRLD 287 (757)
Q Consensus 229 -~l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~ 287 (757)
.+++|++|.+.++. ++...-. ....+++|++|+++++.... .+.....++++++.+.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 27788888877666 4432222 23456778888888776531 122334446666665443
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.58 E-value=0.0012 Score=61.71 Aligned_cols=92 Identities=26% Similarity=0.278 Sum_probs=48.7
Q ss_pred CCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhcc
Q 041016 125 EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG 204 (757)
Q Consensus 125 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 204 (757)
.+|...+......+.||++.|++. ..-..|..++.|..||++.|.+. ..|..+.....++.+++..|..+ ..|.+++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 344455566666666666666654 33334444555555555555554 34444444444555555554444 4455555
Q ss_pred CCCCCCEEEcccccc
Q 041016 205 NLTNLHKLSLRQNKF 219 (757)
Q Consensus 205 ~l~~L~~L~L~~n~l 219 (757)
..++++++++..|.+
T Consensus 109 k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEF 123 (326)
T ss_pred ccCCcchhhhccCcc
Confidence 555555555555543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.13 E-value=0.0013 Score=71.33 Aligned_cols=132 Identities=23% Similarity=0.252 Sum_probs=58.4
Q ss_pred CCEEEccCccCCcc----CchhccCCCCCCEEEcccccccc----ccCccc----cCCCCCCEEEccCCcCcccC----c
Q 041016 185 LKQLILDDNLIQGQ----IPAEIGNLTNLHKLSLRQNKFSG----GIPLSL----LQLRKLETLDLQRNSLSGEI----P 248 (757)
Q Consensus 185 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l----~~l~~L~~L~l~~n~l~~~~----~ 248 (757)
+++|++..|.+++. +.+.+.....++.++++.|.+.. .++.++ ....++++|++++|.++... .
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 34444444444322 23334445555555555555421 111222 23455666666666554211 1
Q ss_pred ccccCCCC-CCEEEccCCCCCCcc----chhhhcC-CCCCEEEccCCccccccchh----hhccCCCcEEEccCCCCc
Q 041016 249 EDIGTLAN-ITILALSNNALTGAI----PQSIRNM-TKLVTLRLDSNVLSGEISTW----LFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 249 ~~l~~l~~-L~~L~L~~n~l~~~~----~~~l~~l-~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~ 316 (757)
..+...+. +..+++..|.+.+.. .+.+..+ ..+++++++.|.++...... +..++.++.+.++.|.+.
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 12233333 444566666554321 1222333 44555666666555333222 233445555555555544
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.91 E-value=0.0013 Score=71.49 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=24.8
Q ss_pred CccEEEccCCcccccChH----hhhccCCCCEEEccCCccc
Q 041016 423 SVMVLMLSSNNFSGHVPK----SISNIYRLLVLDLSNNSFS 459 (757)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~ls~n~l~ 459 (757)
.+..+.|.+|.+...... .+...+.|+.|++++|.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 377888888887754433 3445567777777777765
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.36 E-value=0.22 Score=29.53 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=7.9
Q ss_pred CCCCEEeCCCCCCCcc
Q 041016 653 KGLKSLNLSYNQLQGN 668 (757)
Q Consensus 653 ~~L~~L~Ls~N~l~~~ 668 (757)
++|+.|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555533
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.36 E-value=0.22 Score=29.53 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=7.9
Q ss_pred CCCCEEeCCCCCCCcc
Q 041016 653 KGLKSLNLSYNQLQGN 668 (757)
Q Consensus 653 ~~L~~L~Ls~N~l~~~ 668 (757)
++|+.|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555533
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.43 E-value=0.25 Score=25.97 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=3.2
Q ss_pred CCEEeCCCCc
Q 041016 137 LTYLDLKDNN 146 (757)
Q Consensus 137 L~~L~Ls~n~ 146 (757)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3334444333
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.88 E-value=0.31 Score=28.89 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=11.5
Q ss_pred CCCCEEeCCCCcCccCCCCC
Q 041016 677 EILETLDLSHNSLSGKIPQT 696 (757)
Q Consensus 677 ~~L~~L~Ls~N~l~~~~p~~ 696 (757)
++|++|+|++|+|+...++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666443333
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.88 E-value=0.31 Score=28.89 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=11.5
Q ss_pred CCCCEEeCCCCcCccCCCCC
Q 041016 677 EILETLDLSHNSLSGKIPQT 696 (757)
Q Consensus 677 ~~L~~L~Ls~N~l~~~~p~~ 696 (757)
++|++|+|++|+|+...++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666443333
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.70 E-value=0.0093 Score=56.03 Aligned_cols=88 Identities=19% Similarity=0.245 Sum_probs=55.1
Q ss_pred cccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCC
Q 041016 154 QLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL 233 (757)
Q Consensus 154 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 233 (757)
.+......+.||++.|++. ..-..|+-++.|..|+++.|.+. ..|..++....++++++..|..+ ..|.++...+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4455566777777777655 22334555566666777766665 56666666666666666666665 556666666666
Q ss_pred CEEEccCCcCc
Q 041016 234 ETLDLQRNSLS 244 (757)
Q Consensus 234 ~~L~l~~n~l~ 244 (757)
+++++..+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 66666666543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.26 E-value=0.17 Score=46.89 Aligned_cols=81 Identities=21% Similarity=0.190 Sum_probs=54.7
Q ss_pred ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCc-chhhcc-CCCCCCEEEccCCc-CccccCcccCCCCCCCEEE
Q 041016 493 ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE-FPAFLS-QLSSLQVLNLRNTA-LEGSITDGLSNLTSLQILD 569 (757)
Q Consensus 493 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ 569 (757)
++.++-++..+..+--+.+.+++.++.|.+.+|.-.+. --+.++ -.++|+.|++++|. |+...-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 66677777777766666777888888888888864322 112222 25788888888775 5555556677778888877
Q ss_pred CcCC
Q 041016 570 LSNN 573 (757)
Q Consensus 570 ls~n 573 (757)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 7653
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.18 E-value=0.1 Score=48.33 Aligned_cols=80 Identities=25% Similarity=0.260 Sum_probs=58.2
Q ss_pred cCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCcc-CCcchh-CCCCCCEEeCCCCc-CccCCCCCccCCCCCCEEe
Q 041016 631 YSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGN-IPSTFG-NLEILETLDLSHNS-LSGKIPQTFAKLQQLTSLY 707 (757)
Q Consensus 631 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~-~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~ 707 (757)
++.+|-++..|..+--+.+.++++++.|.+.++.--+. --+-++ -.++|+.|+|++|+ |+...-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 47789999999877777788889999999988864321 001111 24789999999886 7665555677788888888
Q ss_pred CCC
Q 041016 708 LSN 710 (757)
Q Consensus 708 ls~ 710 (757)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 765
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.54 E-value=0.9 Score=26.26 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=7.9
Q ss_pred CCccEEEccCCcccccCh
Q 041016 422 TSVMVLMLSSNNFSGHVP 439 (757)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~ 439 (757)
++|++|++++|++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 345555555555544333
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.23 E-value=21 Score=38.06 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=9.2
Q ss_pred CCCEEEccCCcccccc
Q 041016 280 KLVTLRLDSNVLSGEI 295 (757)
Q Consensus 280 ~L~~L~L~~n~l~~~~ 295 (757)
.++++.+..|++.+..
T Consensus 355 R~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEG 370 (553)
T ss_pred eeeEeecccccccccc
Confidence 3666666666655443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.97 E-value=3.5 Score=24.50 Aligned_cols=14 Identities=50% Similarity=0.655 Sum_probs=7.9
Q ss_pred CCCCEEeCCCCcCc
Q 041016 677 EILETLDLSHNSLS 690 (757)
Q Consensus 677 ~~L~~L~Ls~N~l~ 690 (757)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555666666554
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.59 E-value=28 Score=37.14 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=13.8
Q ss_pred CCCccEEEccCCcccccChHhh
Q 041016 421 STSVMVLMLSSNNFSGHVPKSI 442 (757)
Q Consensus 421 ~~~L~~L~L~~n~l~~~~~~~l 442 (757)
-+.+++++++.|.+....|..+
T Consensus 164 npr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred cchhhhhccCCCcccccCCccc
Confidence 3566777777777665555444
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.29 E-value=6.8 Score=23.23 Aligned_cols=13 Identities=62% Similarity=0.736 Sum_probs=6.5
Q ss_pred CCCEEeCCCCCCC
Q 041016 654 GLKSLNLSYNQLQ 666 (757)
Q Consensus 654 ~L~~L~Ls~N~l~ 666 (757)
+|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3445555555554
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.25 E-value=8.2 Score=23.32 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=8.7
Q ss_pred CCCCEEeCCCCCCC
Q 041016 653 KGLKSLNLSYNQLQ 666 (757)
Q Consensus 653 ~~L~~L~Ls~N~l~ 666 (757)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666665
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.38 E-value=11 Score=40.81 Aligned_cols=63 Identities=32% Similarity=0.271 Sum_probs=39.7
Q ss_pred ccccCeEECcCCCCCCcC--CccccCCCCCCEEeCCCC--CCCccCCcchhCC--CCCCEEeCCCCcCccC
Q 041016 628 LAIYSLMDLSNNQLSGEI--PSSLGSLKGLKSLNLSYN--QLQGNIPSTFGNL--EILETLDLSHNSLSGK 692 (757)
Q Consensus 628 ~~~l~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~ 692 (757)
.+.+..+.|++|++.... ...-...+.|+.|+|++| .+... .++.++ .-|++|.+.+|++...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 455677889999885321 111134567889999999 44422 222222 3578899999988754
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.94 E-value=22 Score=38.78 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=7.5
Q ss_pred ccceeecCCccCcc
Q 041016 328 MLTELSLRSCSVRG 341 (757)
Q Consensus 328 ~L~~L~L~~~~~~~ 341 (757)
.|++|.+.+|.+..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 35555555555543
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.80 E-value=36 Score=19.95 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=7.6
Q ss_pred CCCCCEEeCcCCc
Q 041016 514 LSLLQHLDLHDNN 526 (757)
Q Consensus 514 l~~L~~L~Ls~n~ 526 (757)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3456666666663
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.77 E-value=28 Score=45.70 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=30.4
Q ss_pred eCCCCCCCccCCcchhCCCCCCEEeCCCCcCccC
Q 041016 659 NLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGK 692 (757)
Q Consensus 659 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 692 (757)
||++|+|+.+.+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6899999988888999999999999999988754
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.75 E-value=38 Score=44.62 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=29.7
Q ss_pred ECcCCCCCCcCCccccCCCCCCEEeCCCCCCCc
Q 041016 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG 667 (757)
Q Consensus 635 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 667 (757)
||++|+|+...+..|..+.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999997777889999999999999998863
Done!