Query 041016
Match_columns 757
No_of_seqs 812 out of 4653
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4E-92 1.4E-96 824.5 55.5 701 23-752 7-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.7E-70 1.3E-74 638.8 44.2 564 103-715 93-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-61 7.5E-66 560.1 53.5 575 110-719 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-61 7.2E-66 560.2 48.3 584 113-743 7-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.5E-56 5.1E-61 512.6 48.1 530 113-718 15-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 6.7E-56 2.3E-60 507.2 46.5 514 110-694 33-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-55 5.2E-60 504.2 43.2 529 112-719 13-563 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3E-54 1E-58 493.5 45.3 510 110-694 32-562 (606)
9 4eco_A Uncharacterized protein 100.0 3.8E-56 1.3E-60 508.3 23.0 460 25-573 27-546 (636)
10 3j0a_A TOLL-like receptor 5; m 100.0 9.8E-54 3.3E-58 505.2 37.8 518 108-718 22-564 (844)
11 4ecn_A Leucine-rich repeat pro 100.0 3.4E-53 1.1E-57 490.6 33.7 513 23-713 264-863 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 2E-52 6.9E-57 493.9 37.4 538 113-743 7-565 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 4.1E-51 1.4E-55 464.3 40.1 501 111-721 29-538 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 1E-49 3.5E-54 452.9 40.7 498 79-695 26-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-49 8.4E-54 447.3 37.0 477 110-719 26-515 (549)
16 4eco_A Uncharacterized protein 100.0 3.6E-48 1.2E-52 442.4 22.4 465 110-716 81-602 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 6.1E-47 2.1E-51 427.7 31.8 501 110-742 5-514 (549)
18 4g8a_A TOLL-like receptor 4; l 100.0 9.8E-46 3.4E-50 426.0 42.1 517 110-715 52-581 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-46 1E-50 418.9 32.6 454 162-718 3-485 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-46 9.9E-51 419.0 30.4 464 113-694 3-485 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 2.9E-45 9.9E-50 424.4 29.7 442 135-718 323-844 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-43 8.3E-48 406.1 43.6 524 71-692 35-582 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.8E-44 2.3E-48 403.0 28.9 463 113-719 34-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-41 5.2E-46 383.8 29.2 451 84-580 34-514 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 2E-41 7E-46 352.1 19.4 295 24-362 2-302 (313)
26 3v47_A TOLL-like receptor 5B a 100.0 1.4E-39 4.7E-44 358.5 31.8 373 135-581 30-413 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 3.3E-39 1.1E-43 355.4 34.1 393 186-721 13-415 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 2.9E-40 9.8E-45 360.5 23.1 424 106-720 7-435 (454)
29 1jl5_A Outer protein YOPM; leu 100.0 5E-40 1.7E-44 358.6 23.1 402 159-720 11-417 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-36 4.9E-41 331.5 29.1 130 147-290 30-159 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-36 4.1E-41 332.2 28.0 169 129-316 36-204 (457)
32 1o6v_A Internalin A; bacterial 100.0 1.8E-35 6.3E-40 325.7 33.8 346 108-553 44-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 9.1E-35 3.1E-39 320.2 34.3 343 81-483 46-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 1.5E-35 5.1E-40 328.1 24.4 343 330-740 14-358 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 3.2E-35 1.1E-39 325.4 26.8 303 110-460 32-334 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 4.7E-34 1.6E-38 307.2 26.4 313 107-484 42-354 (390)
37 1ogq_A PGIP-2, polygalacturona 100.0 8.8E-35 3E-39 302.1 19.4 199 504-748 114-313 (313)
38 3oja_B Anopheles plasmodium-re 100.0 1E-33 3.5E-38 321.3 27.4 349 56-484 8-360 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 5.2E-33 1.8E-37 299.1 26.0 315 345-742 63-378 (390)
40 3oja_B Anopheles plasmodium-re 100.0 4.3E-33 1.5E-37 316.2 26.6 319 341-742 65-384 (597)
41 4fmz_A Internalin; leucine ric 100.0 7.4E-32 2.5E-36 285.4 30.6 307 106-482 40-346 (347)
42 4fcg_A Uncharacterized protein 100.0 1.2E-33 4.2E-38 295.1 15.9 274 24-317 23-315 (328)
43 4fmz_A Internalin; leucine ric 100.0 1.3E-31 4.4E-36 283.6 31.1 307 130-504 39-346 (347)
44 1xku_A Decorin; proteoglycan, 100.0 3.4E-30 1.2E-34 270.4 29.5 196 111-313 53-250 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 8.4E-34 2.9E-38 312.9 0.1 398 110-583 3-447 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 3.5E-30 1.2E-34 270.4 26.6 288 111-457 34-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 1E-29 3.4E-34 266.8 28.9 266 398-712 52-330 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-33 6E-38 310.3 -0.8 354 81-460 3-412 (461)
49 2ft3_A Biglycan; proteoglycan, 100.0 6.8E-30 2.3E-34 268.2 25.8 265 398-712 54-331 (332)
50 3ogk_B Coronatine-insensitive 100.0 3.6E-31 1.2E-35 301.6 5.4 450 129-711 67-548 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 8.2E-29 2.8E-33 262.4 18.4 288 60-413 23-316 (353)
52 2z66_A Variable lymphocyte rec 100.0 6.3E-29 2.2E-33 257.8 17.1 252 67-366 7-263 (306)
53 2z66_A Variable lymphocyte rec 100.0 1E-27 3.5E-32 248.6 25.9 248 378-716 11-263 (306)
54 3ogk_B Coronatine-insensitive 100.0 2E-31 6.7E-36 303.8 -2.6 237 65-316 40-306 (592)
55 4fcg_A Uncharacterized protein 100.0 1.8E-27 6.2E-32 248.4 20.4 227 108-364 79-314 (328)
56 2z80_A TOLL-like receptor 2, v 100.0 4.1E-28 1.4E-32 257.0 15.6 289 107-439 28-318 (353)
57 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-27 9E-32 242.8 19.0 207 109-316 31-238 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 2.7E-26 9.2E-31 251.5 25.9 247 112-364 56-303 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 5E-26 1.7E-30 248.4 26.3 244 379-714 48-292 (440)
60 1ozn_A Reticulon 4 receptor; N 99.9 9.7E-27 3.3E-31 238.6 18.9 239 135-374 32-271 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 4.2E-26 1.4E-30 250.0 23.1 229 110-341 75-304 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 1.1E-25 3.6E-30 245.9 25.9 228 110-364 64-292 (440)
63 3g06_A SSPH2 (leucine-rich rep 99.9 3E-26 1E-30 257.1 20.9 298 55-446 10-308 (622)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-28 1.1E-32 253.3 3.9 267 401-720 13-282 (317)
65 1wwl_A Monocyte differentiatio 99.9 8.2E-28 2.8E-32 249.7 6.0 245 109-364 42-309 (312)
66 2o6q_A Variable lymphocyte rec 99.9 1.7E-25 5.9E-30 227.1 22.1 217 64-292 2-218 (270)
67 1wwl_A Monocyte differentiatio 99.9 3.6E-27 1.2E-31 244.8 7.1 251 129-436 37-310 (312)
68 2p1m_B Transport inhibitor res 99.9 2.5E-28 8.7E-33 278.2 -1.9 287 113-456 46-348 (594)
69 2p1m_B Transport inhibitor res 99.9 5.5E-29 1.9E-33 283.7 -8.4 237 65-315 33-301 (594)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-26 4.1E-31 241.4 9.3 238 158-456 33-272 (317)
71 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-24 1.4E-28 239.8 28.5 263 351-719 40-302 (622)
72 3oja_A Leucine-rich immune mol 99.9 1.9E-26 6.6E-31 253.8 8.0 234 423-709 35-270 (487)
73 3oja_A Leucine-rich immune mol 99.9 8.7E-26 3E-30 248.6 10.7 235 398-685 34-270 (487)
74 2o6q_A Variable lymphocyte rec 99.9 9E-24 3.1E-28 214.4 22.6 205 471-718 18-222 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 1.7E-23 5.7E-28 213.3 22.9 225 114-367 11-240 (276)
76 3rfs_A Internalin B, repeat mo 99.9 9.3E-24 3.2E-28 214.4 18.5 205 442-720 37-241 (272)
77 2z62_A TOLL-like receptor 4, v 99.9 3E-23 1E-27 211.4 21.5 205 110-316 28-237 (276)
78 3m19_A Variable lymphocyte rec 99.9 5.5E-23 1.9E-27 206.1 19.7 158 136-293 36-193 (251)
79 1p9a_G Platelet glycoprotein I 99.9 8.8E-23 3E-27 208.8 21.5 203 466-715 7-209 (290)
80 3rfs_A Internalin B, repeat mo 99.9 1.9E-23 6.6E-28 212.1 15.9 208 132-350 38-245 (272)
81 1p9a_G Platelet glycoprotein I 99.9 1.6E-22 5.3E-27 206.9 21.9 204 105-316 5-208 (290)
82 2ast_B S-phase kinase-associat 99.9 1.6E-24 5.5E-29 227.9 6.6 236 64-313 34-282 (336)
83 3goz_A Leucine-rich repeat-con 99.9 8.5E-24 2.9E-28 224.3 8.3 268 115-442 3-304 (362)
84 2ca6_A RAN GTPase-activating p 99.9 1E-23 3.4E-28 226.2 5.8 243 102-368 24-320 (386)
85 3m19_A Variable lymphocyte rec 99.9 1.2E-21 4.2E-26 196.2 20.5 180 494-718 17-196 (251)
86 3goz_A Leucine-rich repeat-con 99.9 2.7E-23 9.4E-28 220.4 8.6 254 97-368 9-301 (362)
87 2ast_B S-phase kinase-associat 99.9 6E-23 2E-27 215.9 10.6 248 424-720 49-312 (336)
88 2xwt_C Thyrotropin receptor; s 99.9 1.7E-22 6E-27 201.0 12.3 199 484-727 25-229 (239)
89 2ca6_A RAN GTPase-activating p 99.9 1.6E-23 5.4E-28 224.6 4.4 245 414-718 24-320 (386)
90 4glp_A Monocyte differentiatio 99.9 4E-22 1.4E-26 206.6 14.8 227 423-715 65-308 (310)
91 2xwt_C Thyrotropin receptor; s 99.9 8.8E-22 3E-26 195.9 15.1 196 111-313 32-236 (239)
92 1h6u_A Internalin H; cell adhe 99.9 5.2E-21 1.8E-25 197.6 18.9 194 106-316 37-230 (308)
93 1h6u_A Internalin H; cell adhe 99.9 7.2E-21 2.5E-25 196.6 19.9 208 115-365 24-231 (308)
94 4glp_A Monocyte differentiatio 99.9 7.4E-22 2.5E-26 204.6 11.4 228 108-341 62-308 (310)
95 2o6s_A Variable lymphocyte rec 99.9 3.6E-21 1.2E-25 186.9 15.2 185 66-280 6-190 (208)
96 3cvr_A Invasion plasmid antige 99.8 2.9E-20 1E-24 205.9 15.8 209 58-304 34-255 (571)
97 3e6j_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 177.2 17.8 162 59-244 11-172 (229)
98 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 176.5 15.5 181 113-304 10-190 (208)
99 4ay9_X Follicle-stimulating ho 99.8 2.8E-20 9.7E-25 196.1 11.5 223 110-362 30-257 (350)
100 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.8E-24 190.1 16.7 238 114-384 13-256 (350)
101 3cvr_A Invasion plasmid antige 99.8 2.7E-19 9.2E-24 198.1 17.0 181 447-719 60-248 (571)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 5.3E-19 1.8E-23 172.8 16.3 156 518-718 14-170 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 8E-19 2.7E-23 171.5 17.3 153 518-715 14-166 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-18 5.1E-23 169.6 15.7 134 111-244 33-166 (220)
105 1h6t_A Internalin B; cell adhe 99.8 1.7E-18 5.8E-23 177.1 16.5 170 133-316 44-213 (291)
106 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8.2E-23 176.0 17.4 182 478-715 33-214 (291)
107 3e6j_A Variable lymphocyte rec 99.8 4.2E-18 1.5E-22 167.6 16.9 156 517-718 21-176 (229)
108 2v9t_B SLIT homolog 2 protein 99.8 4.8E-18 1.6E-22 166.0 16.5 151 113-267 14-164 (220)
109 2xot_A Amphoterin-induced prot 99.8 4.7E-18 1.6E-22 179.8 16.3 175 114-292 22-202 (361)
110 1m9s_A Internalin B; cell inva 99.8 2.8E-18 9.7E-23 192.3 15.1 174 106-294 39-212 (605)
111 2xot_A Amphoterin-induced prot 99.8 5E-18 1.7E-22 179.6 15.7 176 138-316 21-202 (361)
112 1m9s_A Internalin B; cell inva 99.8 7.8E-18 2.7E-22 188.7 16.9 194 110-320 21-214 (605)
113 4ezg_A Putative uncharacterize 99.7 5.6E-18 1.9E-22 162.7 11.7 154 512-715 41-195 (197)
114 1xeu_A Internalin C; cellular 99.7 7.3E-18 2.5E-22 169.5 11.6 175 485-716 13-187 (263)
115 4ezg_A Putative uncharacterize 99.7 2.4E-17 8.1E-22 158.3 13.0 104 134-241 43-146 (197)
116 4b8c_D Glucose-repressible alc 99.7 6.1E-19 2.1E-23 202.9 2.1 260 25-315 129-403 (727)
117 1dce_A Protein (RAB geranylger 99.7 8.7E-20 3E-24 203.4 -5.2 121 541-708 443-567 (567)
118 1w8a_A SLIT protein; signaling 99.7 1.5E-17 5.1E-22 158.7 10.3 87 632-718 57-143 (192)
119 1dce_A Protein (RAB geranylger 99.7 1.7E-19 5.9E-24 201.0 -4.2 198 106-310 345-567 (567)
120 1xeu_A Internalin C; cellular 99.7 1.8E-17 6.2E-22 166.6 8.9 171 108-294 17-187 (263)
121 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4E-21 152.5 11.9 132 518-694 11-143 (192)
122 4b8c_D Glucose-repressible alc 99.6 5.4E-17 1.8E-21 186.7 4.9 191 110-313 173-369 (727)
123 2ell_A Acidic leucine-rich nuc 99.6 5.9E-16 2E-20 144.4 11.0 132 110-244 24-160 (168)
124 3sb4_A Hypothetical leucine ri 99.6 1.2E-16 4.1E-21 166.8 6.7 260 109-380 48-327 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 6.9E-16 2.4E-20 143.9 11.2 134 133-268 22-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 6E-16 2E-20 141.1 9.8 127 110-239 17-148 (149)
127 2wfh_A SLIT homolog 2 protein 99.6 3.9E-15 1.3E-19 141.8 15.4 84 632-715 57-140 (193)
128 2je0_A Acidic leucine-rich nuc 99.6 7.8E-16 2.7E-20 140.3 9.6 129 133-263 15-148 (149)
129 3sb4_A Hypothetical leucine ri 99.6 1.2E-16 4.2E-21 166.7 4.8 284 108-405 23-328 (329)
130 2o6r_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 139.5 14.1 87 632-718 55-141 (177)
131 2o6r_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 139.3 14.1 111 110-221 28-138 (177)
132 2wfh_A SLIT homolog 2 protein 99.6 6.5E-15 2.2E-19 140.3 14.8 127 113-244 13-139 (193)
133 4fdw_A Leucine rich hypothetic 99.6 4.2E-14 1.4E-18 150.5 22.4 265 108-386 111-382 (401)
134 4fdw_A Leucine rich hypothetic 99.6 4.3E-14 1.5E-18 150.4 22.0 268 131-410 109-382 (401)
135 4fs7_A Uncharacterized protein 99.6 6.4E-14 2.2E-18 150.0 21.7 328 104-474 65-393 (394)
136 4fs7_A Uncharacterized protein 99.6 1.8E-13 6.3E-18 146.4 21.5 322 82-451 72-393 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-14 8.2E-19 134.4 9.7 132 105-243 14-152 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 1.6E-16 5.6E-21 152.5 -7.4 155 511-714 14-185 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.5 5E-14 1.7E-18 132.2 9.7 110 130-244 14-126 (176)
140 1ds9_A Outer arm dynein; leuci 99.5 4.1E-16 1.4E-20 149.7 -7.1 86 154-244 43-128 (198)
141 3g39_A Variable lymphocyte rec 99.5 2.7E-13 9.2E-18 126.2 12.1 90 629-718 30-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 122.7 12.3 89 630-718 34-122 (174)
143 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 121.2 12.6 104 113-220 12-115 (170)
144 2r9u_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 120.5 12.8 104 113-220 15-118 (174)
145 4gt6_A Cell surface protein; l 99.4 3.6E-11 1.2E-15 128.5 23.8 129 345-479 259-388 (394)
146 4gt6_A Cell surface protein; l 99.3 1.6E-10 5.5E-15 123.4 25.1 131 416-575 259-390 (394)
147 3un9_A NLR family member X1; l 99.3 2.5E-13 8.6E-18 143.1 -0.4 63 110-173 72-140 (372)
148 3un9_A NLR family member X1; l 99.3 2.2E-13 7.5E-18 143.6 -2.2 183 134-316 71-283 (372)
149 2ifg_A High affinity nerve gro 99.2 5.9E-11 2E-15 124.6 11.1 104 543-691 12-117 (347)
150 2ifg_A High affinity nerve gro 99.1 1.2E-10 4.3E-15 122.1 11.2 89 155-244 27-116 (347)
151 4h09_A Hypothetical leucine ri 99.0 1.8E-08 6.1E-13 107.0 23.3 300 110-448 46-358 (379)
152 4h09_A Hypothetical leucine ri 99.0 3.6E-08 1.2E-12 104.6 24.9 146 509-701 211-356 (379)
153 2ra8_A Uncharacterized protein 98.9 2E-09 6.7E-14 112.3 7.5 157 154-314 167-341 (362)
154 2ra8_A Uncharacterized protein 98.8 1.2E-08 4E-13 106.4 9.0 139 175-316 164-320 (362)
155 3rw6_A Nuclear RNA export fact 98.7 5.8E-11 2E-15 117.1 -8.9 65 156-222 167-235 (267)
156 1io0_A Tropomodulin; LRR prote 98.5 3.9E-08 1.3E-12 92.3 2.8 45 508-552 29-78 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 3.2E-08 1.1E-12 92.9 0.9 95 101-196 27-136 (185)
158 3rw6_A Nuclear RNA export fact 98.3 6.6E-07 2.3E-11 88.1 5.4 78 628-707 169-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 3.1E-06 1.1E-10 77.1 3.1 82 136-217 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.9 3.6E-06 1.2E-10 76.7 3.3 83 159-241 61-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.0001 3.5E-09 68.4 3.5 67 510-576 36-111 (197)
162 3rfe_A Platelet glycoprotein I 97.1 0.00097 3.3E-08 57.7 6.8 57 632-690 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00089 3E-08 62.1 5.2 41 180-220 38-83 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0022 7.6E-08 55.4 7.0 57 656-714 11-68 (130)
165 2lz0_A Uncharacterized protein 52.7 27 0.00094 27.7 5.8 41 174-215 11-51 (100)
166 2lz0_A Uncharacterized protein 51.0 25 0.00086 28.0 5.4 46 503-549 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-92 Score=824.47 Aligned_cols=701 Identities=31% Similarity=0.450 Sum_probs=620.5
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceee-
Q 041016 23 LCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSV- 101 (757)
Q Consensus 23 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~- 101 (757)
+++.++|++||++||+++. + + . .+++|+.++|||+|.||+|+ .++|++++|++. .+.|.
T Consensus 7 ~~~~~~~~~all~~k~~~~---~-~------~-~l~~W~~~~~~C~w~gv~C~----~~~v~~L~L~~~-----~l~g~~ 66 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLP---D-K------N-LLPDWSSNKNPCTFDGVTCR----DDKVTSIDLSSK-----PLNVGF 66 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCS---C-T------T-SSTTCCTTSCGGGSTTEEEE----TTEEEEEECTTS-----CCCEEH
T ss_pred ccCCHHHHHHHHHHHhhCC---C-c------c-cccCCCCCCCCcCCcceEEC----CCcEEEEECCCC-----CcCCcc
Confidence 3567899999999999986 3 4 4 68899988899999999998 479999999987 78888
Q ss_pred --ccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCc--cccCCCCCCEEEccCCcCCCcccc
Q 041016 102 --VLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPS--QLFNLRYLEFLDLSANAIEGKLSS 177 (757)
Q Consensus 102 --~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~ 177 (757)
+++.+.++++|+.++++.+.+. .+| ..|+++++|++|+|++|.++|.+|. .++++++|++|+|++|.+.+..|.
T Consensus 67 ~~l~~~l~~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 144 (768)
T 3rgz_A 67 SAVSSSLLSLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144 (768)
T ss_dssp HHHHHHTTTCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred CccChhHhccCcccccCCcCCCcC-CCc-hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence 8899999999999999999875 466 6799999999999999999999998 999999999999999999988887
Q ss_pred cc-cCCCCCCEEEccCccCCccCchh---ccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccC
Q 041016 178 RV-AGLKNLKQLILDDNLIQGQIPAE---IGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT 253 (757)
Q Consensus 178 ~~-~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 253 (757)
.+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+++.+|. +++
T Consensus 145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~ 221 (768)
T 3rgz_A 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGD 221 (768)
T ss_dssp CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTT
T ss_pred HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-ccc
Confidence 76 89999999999999999888877 89999999999999999977664 8899999999999999988887 999
Q ss_pred CCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccC-Cccccee
Q 041016 254 LANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVP-KCMLTEL 332 (757)
Q Consensus 254 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L 332 (757)
+++|++|++++|.+++.+|..++++++|++|++++|.+++.+|.. .+++|++|++++|.++......+.. +..|++|
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence 999999999999999999999999999999999999999888765 8999999999999988433334434 4789999
Q ss_pred ecCCccCccCcchhccCCCCCCEEEccCCcccCccccc-ccCcc-ccEEEcCCCcCCCCCCCCccCCC-CCCEEeCcCcc
Q 041016 333 SLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQW-LSELN-LGTVILSDNMLTGSLPPPLFESR-NLSVLVLSRNN 409 (757)
Q Consensus 333 ~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~-L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~L~~n~ 409 (757)
++++|.+++.+|.+++.+++|++|++++|++.+.+|.. +..++ |++|++++|++++.+|..+..++ +|++|++++|.
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 99999999999999999999999999999999888875 78887 99999999999999999999887 99999999999
Q ss_pred ccccCCcccCC--CCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCC
Q 041016 410 FSGELPETIGQ--STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVP 486 (757)
Q Consensus 410 l~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~ 486 (757)
+++.++..+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+++.+| .+..+++|++|++++|++.+.+|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 99999888877 8899999999999999999999999999999999999999888 89999999999999999999999
Q ss_pred chhhhc--ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCC
Q 041016 487 SSFGVT--ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTS 564 (757)
Q Consensus 487 ~~~~~~--l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 564 (757)
..+... +++|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 988754 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEECcCCcccccCCcccccccccccCCCCCC---------CCCcccC-----------Ccccccee------Ee--ee
Q 041016 565 LQILDLSNNNLLGKIPSSFGNLQGMIDTPSILP---------TLPEIFS-----------FPVEIQDL------IV--NW 616 (757)
Q Consensus 565 L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~---------~~~~~~~-----------~~~~~~~l------~~--~~ 616 (757)
|++|++++|+++|.+|..+.....+........ ....... .+..+..+ .+ ..
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 619 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence 999999999999999999877665532211000 0000000 00000000 00 00
Q ss_pred ccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCC
Q 041016 617 KNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQT 696 (757)
Q Consensus 617 ~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 696 (757)
...........++.++.|||++|+++|.+|..|+++++|++|+|++|+++|.+|+.|+++++|++|||++|+++|.+|..
T Consensus 620 ~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 00000112234678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 041016 697 FAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCPEDVQ 752 (757)
Q Consensus 697 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc~~~l~~~c~~~~~ 752 (757)
+..+++|++||+++|+++|.||+++||+++...+ |.|||+|||+|+. +|....+
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~-~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK-FLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG-GCSCTEEESTTSC-CCCSCC-
T ss_pred HhCCCCCCEEECcCCcccccCCCchhhccCCHHH-hcCCchhcCCCCc-CCCCCcc
Confidence 9999999999999999999999999999999999 9999999999986 8976654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-70 Score=638.82 Aligned_cols=564 Identities=34% Similarity=0.517 Sum_probs=420.5
Q ss_pred cccccCCCCCCEEeCCCCCCCCCCCcc--ccCCCCCCCEEeCCCCcCCCCcCccc-cCCCCCCEEEccCCcCCCccccc-
Q 041016 103 LAPIFRIRSLMTLDLSYNSMQGEVPGT--GFANLTRLTYLDLKDNNLNGSIPSQL-FNLRYLEFLDLSANAIEGKLSSR- 178 (757)
Q Consensus 103 ~~~l~~l~~L~~L~Ls~n~l~~~i~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~~- 178 (757)
+..+.++++|++|||++|.++|.+| . .++++++|++|+|++|.+++.+|..+ .++++|++|++++|.+++..+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred chhhccCCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 3567777777777777777777666 4 67777777777777777777766655 67777777777777777666665
Q ss_pred --ccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCC
Q 041016 179 --VAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN 256 (757)
Q Consensus 179 --~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 256 (757)
+.++++|++|++++|.+.+..|. .++++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+..+++
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred hhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence 66777777777777777655443 6677777777777777766665 777777777777777777777777777777
Q ss_pred CCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhcc-CCCcEEEccCCCCcCCCcccccCCcccceeecC
Q 041016 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDL-QGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLR 335 (757)
Q Consensus 257 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 335 (757)
|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.++......+.....|++|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 777777777777665554 66777777777777777777666554 777777777777765555556666667777777
Q ss_pred CccCccCcchh-ccCCCCCCEEEccCCcccCcccccccCc--cccEEEcCCCcCCCCCCCCccC--CCCCCEEeCcCccc
Q 041016 336 SCSVRGSIPLW-LSTQTELTFLDLSENELEGTYPQWLSEL--NLGTVILSDNMLTGSLPPPLFE--SRNLSVLVLSRNNF 410 (757)
Q Consensus 336 ~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~--~~~L~~L~L~~n~l 410 (757)
+|.+.+.+|.. +..+++|++|++++|++.+.+|..+..+ .|++|++++|++++.+|..+.. +++|++|++++|.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 77776666654 6777777777777777777777666655 3777777777777666666655 56777777777777
Q ss_pred cccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchh
Q 041016 411 SGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSF 489 (757)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~ 489 (757)
++.+|..+..+++|++|++++|.+++.+|..+.++++|+.|++++|.+.+.+| .+..+++|++|++++|++++.+|..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 77777777777777777777777777777777777777777777777776666 56677777777777777777777666
Q ss_pred hhc--ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCc----------
Q 041016 490 GVT--ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD---------- 557 (757)
Q Consensus 490 ~~~--l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---------- 557 (757)
... +++|++++|++++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|.
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 543 77777777777777777777777777777777777777777777777777777777776655554
Q ss_pred ------------------------------------------------------------ccCCCCCCCEEECcCCcccc
Q 041016 558 ------------------------------------------------------------GLSNLTSLQILDLSNNNLLG 577 (757)
Q Consensus 558 ------------------------------------------------------------~l~~l~~L~~L~ls~n~l~~ 577 (757)
.+..+++|+.||+++|+++|
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 34456778888888888888
Q ss_pred cCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCE
Q 041016 578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKS 657 (757)
Q Consensus 578 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~ 657 (757)
.+|..+++++.| +.|+|++|+++|.+|..|+++++|++
T Consensus 647 ~ip~~l~~l~~L------------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 647 YIPKEIGSMPYL------------------------------------------FILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp CCCGGGGGCTTC------------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCHHHhccccC------------------------------------------CEEeCcCCccCCCCChHHhCCCCCCE
Confidence 888887776655 89999999999999999999999999
Q ss_pred EeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCc-cee
Q 041016 658 LNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNK-LSG 715 (757)
Q Consensus 658 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g 715 (757)
|||++|+++|.+|..|+.+++|++||+++|+++|.+|.. ..+..+....+.+|+ +.|
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999999999999999999999999999999999999975 345666777788887 555
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-61 Score=560.09 Aligned_cols=575 Identities=23% Similarity=0.246 Sum_probs=493.5
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
+++++|++++|.+++ ++...|.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 689999999999985 4547899999999999999999988899999999999999999999987777899999999999
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCccccc--CCCCCCEEEccCCCC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIG--TLANITILALSNNAL 267 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l 267 (757)
+++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999987788899999999999999999988888899999999999999999887777654 568999999999999
Q ss_pred CCccchhhhcCCCCCEEEccCCccccccchhhh---ccCCCcEEEccCCCCcCCCcccccCCcc--cceeecCCccCccC
Q 041016 268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF---DLQGMKSLYLGGNKLKWNDNVSIVPKCM--LTELSLRSCSVRGS 342 (757)
Q Consensus 268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~L~~~~~~~~ 342 (757)
++..|..+..+++|+.+++.++.+.+.....+. ..++|+.|++++|.++......+..... |++|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 988899999999999999999887644333222 3578999999999998776666665544 99999999999988
Q ss_pred cchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCC-----CCCC----CccCCCCCCEEeCcCccccc
Q 041016 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTG-----SLPP----PLFESRNLSVLVLSRNNFSG 412 (757)
Q Consensus 343 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~-----~~~~----~l~~~~~L~~L~L~~n~l~~ 412 (757)
.|.++..+++|++|++++|++.+..|..+..+. |+++++++|...+ .+|. .+..+++|++|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 888999999999999999999998888888887 9999999876554 2332 67788999999999999999
Q ss_pred cCCcccCCCCCccEEEccCCcccc--cChHhhhcc--CCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCC-
Q 041016 413 ELPETIGQSTSVMVLMLSSNNFSG--HVPKSISNI--YRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVP- 486 (757)
Q Consensus 413 ~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l--~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~- 486 (757)
..+..|..+++|++|++++|.+.. .....|..+ ++|+.|++++|.+++..| .+..+++|++|++++|++.+.+|
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 888899999999999999997542 233344433 589999999999998877 88999999999999999998776
Q ss_pred chhhhc--ccEEEccCCccccccchhccCCCCCCEEeCcCCccc--CcchhhccCCCCCCEEEccCCcCccccCcccCCC
Q 041016 487 SSFGVT--ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT--GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNL 562 (757)
Q Consensus 487 ~~~~~~--l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 562 (757)
..+... +++|++++|++.+..+..|..+++|++|++++|.+. +..|..+..+++|++|++++|++++..+..|..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 444433 999999999999999999999999999999999987 5788899999999999999999998888889999
Q ss_pred CCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCC
Q 041016 563 TSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS 642 (757)
Q Consensus 563 ~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~ 642 (757)
++|++|++++|++++..+..+..-. ......++.|+.|+|++|+++
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~----------------------------------~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGP----------------------------------IYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSC----------------------------------CCTTTTCTTCCEEECCSSCCC
T ss_pred cccCEEeCCCCCccccchhhccCCc----------------------------------chhhcCCCCCCEEECCCCCCC
Confidence 9999999999999865333221000 000112566799999999999
Q ss_pred CcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCcc-CCCCCCEEeCCCCcceecCCC
Q 041016 643 GEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFA-KLQQLTSLYLSNNKLSGRIPE 719 (757)
Q Consensus 643 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~iP~ 719 (757)
...+..|.++++|++|+|++|++++.++..|.++++|++|++++|++++..|..+. .+++|++|++++|++.+.-+.
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 55556799999999999999999988888899999999999999999998888787 789999999999999987664
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-61 Score=560.21 Aligned_cols=584 Identities=24% Similarity=0.231 Sum_probs=508.6
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
+.+|.++++++ .+| ..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 7 ~~~~cs~~~L~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLT-QVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCS-SCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCcc-ccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 46788888887 677 4443 7999999999999988778899999999999999999999999999999999999999
Q ss_pred ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccc
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP 272 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 272 (757)
|.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 99997666689999999999999999998878899999999999999999999888899999999999999999998877
Q ss_pred hhhh--cCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccc---cCCcccceeecCCccCccCcchhc
Q 041016 273 QSIR--NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSI---VPKCMLTELSLRSCSVRGSIPLWL 347 (757)
Q Consensus 273 ~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~l 347 (757)
..+. .+++|++|++++|.+++..+..+..+++|+.+++.++.+.......+ .....|++|++++|.+.+..|.++
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 7665 45899999999999999999999999999999999988753221111 234679999999999999889999
Q ss_pred cCCCC--CCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccc-----cCCc---
Q 041016 348 STQTE--LTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG-----ELPE--- 416 (757)
Q Consensus 348 ~~~~~--L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~-----~~~~--- 416 (757)
..++. |+.|++++|++.+..+..+..++ |++|++++|++.+..|..+..+++|++|++++|...+ .+|.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 88755 99999999999988888888887 9999999999999999999999999999999876543 2232
Q ss_pred -ccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCccccc-CC--CCCC--CCcccEEECcCCccccCCCchhh
Q 041016 417 -TIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE-FP--AFGS--DSLVGHVDISSNRFSGEVPSSFG 490 (757)
Q Consensus 417 -~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~--~~~~--~~~L~~L~l~~n~l~~~~~~~~~ 490 (757)
.+..+++|++|++++|.+.+..+..|.++++|++|++++|.+... ++ .+.. .+.|+.|++++|++++..|..+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 678899999999999999999899999999999999999986432 22 2322 36899999999999998888776
Q ss_pred hc--ccEEEccCCccccccc-hhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCc--cccCcccCCCCCC
Q 041016 491 VT--ILMLSLSENKFSGQLP-QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALE--GSITDGLSNLTSL 565 (757)
Q Consensus 491 ~~--l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L 565 (757)
.. ++.|++++|.+++.+| ..|.++++|++|++++|++.+..+..|..+++|++|++++|.+. +.+|..|..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 54 9999999999998766 78999999999999999999888999999999999999999987 5688899999999
Q ss_pred CEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcC
Q 041016 566 QILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEI 645 (757)
Q Consensus 566 ~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~ 645 (757)
++|++++|++++..|..|.++++| +.|++++|++++..
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKL------------------------------------------EILDLQHNNLARLW 520 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTC------------------------------------------CEEECCSSCCGGGG
T ss_pred CEEECCCCCCCcCChhhhcccccc------------------------------------------CEEeCCCCCccccc
Confidence 999999999998777777766555 89999999998652
Q ss_pred C--------ccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecC
Q 041016 646 P--------SSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRI 717 (757)
Q Consensus 646 p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 717 (757)
+ ..|.++++|++|+|++|+++...+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 2 24789999999999999999766678999999999999999999888888999999999999999999877
Q ss_pred CCCC--CCCCCCCCccccCCCCCCCCCC
Q 041016 718 PESP--QMDRQIDPVIYANNSGLCGMQI 743 (757)
Q Consensus 718 P~~~--~~~~~~~~~~~~gn~~lc~~~l 743 (757)
|... .+.++.... +.|||..|++++
T Consensus 601 ~~~~~~~~~~L~~l~-l~~N~~~c~c~~ 627 (680)
T 1ziw_A 601 KKVFGPAFRNLTELD-MRFNPFDCTCES 627 (680)
T ss_dssp HHHHHHHHTTCSEEE-CTTCCCCBCCCC
T ss_pred hhHhcccccccCEEE-ccCCCcccCCcc
Confidence 6531 345555566 899999998764
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-56 Score=512.58 Aligned_cols=530 Identities=21% Similarity=0.209 Sum_probs=439.6
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
++++.++..++ .+| ..+. +++++|++++|.+++..|..|+++++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus 15 ~~~~c~~~~l~-~iP-~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN-EIP-GTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS-SCC-TTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcc-cCc-CCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 47888888887 677 4443 4799999999999988888999999999999999999988899999999999999999
Q ss_pred ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccc
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP 272 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 272 (757)
|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++.....+..+++|++|++++|.+++..+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 99998889999999999999999999997777889999999999999999987544455558999999999999988778
Q ss_pred hhhhcCCCCC--EEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCC
Q 041016 273 QSIRNMTKLV--TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350 (757)
Q Consensus 273 ~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 350 (757)
..++.+++|+ +|++++|.+++..+..+. ...|++|++++|.. ++..+..+
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---------------------------~~~~~~~l 222 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---------------------------LLVIFKGL 222 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---------------------------HHHHHHHT
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---------------------------HHHHhhhc
Confidence 8889999998 888999998876666543 35778888877651 12222222
Q ss_pred CCCCEEEccCC--------cccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCC
Q 041016 351 TELTFLDLSEN--------ELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQST 422 (757)
Q Consensus 351 ~~L~~L~l~~n--------~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 422 (757)
.+++...+... .+.......+....++.+++++|.+.+..+..+..+++|++|++++|.++ .+|..+..++
T Consensus 223 ~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~ 301 (606)
T 3t6q_A 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301 (606)
T ss_dssp TTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT
T ss_pred cccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccc
Confidence 22222222111 11111122223335888888888888777777888899999999999887 6777888889
Q ss_pred CccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC--CCCCCCcccEEECcCCccccCC--Cchhhh--cccEE
Q 041016 423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP--AFGSDSLVGHVDISSNRFSGEV--PSSFGV--TILML 496 (757)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~--~l~~L 496 (757)
+|++|++++|.+.+..|..+..+++|++|++++|.+.+.++ .+..+++|++|++++|++.+.. +..+.. .++.|
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence 99999999999888888888899999999999998887776 4888899999999999888765 444443 38999
Q ss_pred EccCCccccccchhccCCCCCCEEeCcCCcccCcchh-hccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcc
Q 041016 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA-FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575 (757)
Q Consensus 497 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l 575 (757)
++++|++.+..|..|..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|++
T Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 9999999988899999999999999999999877654 488999999999999999998999999999999999999999
Q ss_pred cccC---CcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCC
Q 041016 576 LGKI---PSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSL 652 (757)
Q Consensus 576 ~~~~---p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l 652 (757)
.+.. +..+..+ +.|+.|++++|++++..|..|+.+
T Consensus 462 ~~~~~~~~~~~~~l------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 462 PKGNIQKTNSLQTL------------------------------------------GRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp GGGEECSSCGGGGC------------------------------------------TTCCEEECTTSCCCEECTTTTTTC
T ss_pred CccccccchhhccC------------------------------------------CCccEEECCCCccCccChhhhccc
Confidence 8632 2334443 455999999999999999999999
Q ss_pred CCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016 653 KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP 718 (757)
Q Consensus 653 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 718 (757)
++|++|+|++|++++.+|+.|.+++.| +|++++|++++.+|..+..+++|++|++++|++.+..+
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999999999999 99999999999999999999999999999999998766
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.7e-56 Score=507.17 Aligned_cols=514 Identities=24% Similarity=0.244 Sum_probs=394.0
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
+++++|++++|.+++..| .+|+++++|++|+|++|.+++..|.+|+++++|++|+|++|.+.+..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 378999999999986555 8899999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCC--EEEccCCCC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT--ILALSNNAL 267 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l 267 (757)
+++|.+++..|..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999987788899999999999999999975545566699999999999999988899999999999 999999999
Q ss_pred CCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcC-----CCcccccCCc--ccceeecCCccCc
Q 041016 268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKW-----NDNVSIVPKC--MLTELSLRSCSVR 340 (757)
Q Consensus 268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~--~L~~L~L~~~~~~ 340 (757)
.+..|..+.. .+|++|++++|. ..+..+..+.+++...+....+.. +....+.... .+++|++++|.+.
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 9877766654 689999999987 355666677766655554443332 1222222222 4677777777776
Q ss_pred cCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCc-cc
Q 041016 341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPE-TI 418 (757)
Q Consensus 341 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~-~~ 418 (757)
+..+..|..+++|++|++++|+++ .+|..+..++ |++|++++|++.+..|..+..+++|++|++++|.+.+.++. .+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 666666777777777777777666 4444444444 55555555555544444555555555555555555433332 24
Q ss_pred CCCCCccEEEccCCcccccC--hHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccE
Q 041016 419 GQSTSVMVLMLSSNNFSGHV--PKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILM 495 (757)
Q Consensus 419 ~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 495 (757)
..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+ .+..+++| +.
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------------------~~ 404 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL----------------------EL 404 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC----------------------SE
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC----------------------Ce
Confidence 45555555555555554433 4444555555555555555544443 44444444 45
Q ss_pred EEccCCccccccc-hhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccc---cCcccCCCCCCCEEECc
Q 041016 496 LSLSENKFSGQLP-QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS---ITDGLSNLTSLQILDLS 571 (757)
Q Consensus 496 L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~ls 571 (757)
|++++|++.+..+ ..+.++++|++|++++|.+++..|..+..+++|++|++++|++.+. .+..+..+++|++|+++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 5555555554443 3478899999999999999988899999999999999999999863 23678999999999999
Q ss_pred CCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccC
Q 041016 572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGS 651 (757)
Q Consensus 572 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~ 651 (757)
+|++++..|..|.+++.| +.|+|++|++++..|..+.+
T Consensus 485 ~n~l~~~~~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMM------------------------------------------NHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp TSCCCEECTTTTTTCTTC------------------------------------------CEEECCSSCCCGGGGGGGTT
T ss_pred CCccCccChhhhccccCC------------------------------------------CEEECCCCccCcCChhHhCc
Confidence 999999888888776655 89999999999999999999
Q ss_pred CCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCC
Q 041016 652 LKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694 (757)
Q Consensus 652 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 694 (757)
++.| +|++++|++++.+|+.|..+++|++|++++|++.+..+
T Consensus 523 l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999 99999999999999999999999999999999987554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-55 Score=504.23 Aligned_cols=529 Identities=23% Similarity=0.229 Sum_probs=436.2
Q ss_pred CCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEcc
Q 041016 112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILD 191 (757)
Q Consensus 112 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 191 (757)
-++++.+++.++ .+| ..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVP-DDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCS-SCC-TTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcc-cCC-CCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 367889988887 677 3333 789999999999998777789999999999999999988888888899999999999
Q ss_pred CccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcc-cCcccccCCCCCCEEEccCCCCCCc
Q 041016 192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSG-EIPEDIGTLANITILALSNNALTGA 270 (757)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 270 (757)
+|.+++..|.+|+++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999888778888899999999999998887777788888888888888888875 5688888888888888888888877
Q ss_pred cchhhhcCCCCC----EEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchh
Q 041016 271 IPQSIRNMTKLV----TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346 (757)
Q Consensus 271 ~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 346 (757)
.+..++.+++|+ +|++++|.+++..+..+... +|++|++++|.+.. +..|.+
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~-----------------------~~~~~~ 224 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSS-----------------------NIMKTC 224 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCH-----------------------HHHHHH
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccch-----------------------hHHHHH
Confidence 677676665544 67777777765444443333 66666666665541 355677
Q ss_pred ccCCCCCCEEEccCCcccCc---------ccccccCccccEEEc-CCCcCCCCCCCCccCCCCCCEEeCcCccccccCCc
Q 041016 347 LSTQTELTFLDLSENELEGT---------YPQWLSELNLGTVIL-SDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPE 416 (757)
Q Consensus 347 l~~~~~L~~L~l~~n~l~~~---------~~~~~~~~~L~~L~l-~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 416 (757)
+..+++++.+++..+.+.+. .+..+..+.++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +|
T Consensus 225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~- 301 (606)
T 3vq2_A 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE- 301 (606)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-
T ss_pred hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-
Confidence 78888888877765443321 122233344788888 77788877777 8888999999999999964 45
Q ss_pred ccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccC--CCchhhhc--
Q 041016 417 TIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE--VPSSFGVT-- 492 (757)
Q Consensus 417 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~-- 492 (757)
.+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.+ .+..+++|++|++++|++++. .|..+...
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 788899999999999999 5777 45 8999999999999766555 667889999999999999876 36655543
Q ss_pred ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcch-hhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECc
Q 041016 493 ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS 571 (757)
Q Consensus 493 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 571 (757)
++.|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 9999999999886 55889999999999999999998877 688999999999999999999999999999999999999
Q ss_pred CCcccc-cCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCcccc
Q 041016 572 NNNLLG-KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLG 650 (757)
Q Consensus 572 ~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~ 650 (757)
+|++++ .+|..+..+++| +.|++++|++++..|..|+
T Consensus 457 ~n~l~~~~~~~~~~~l~~L------------------------------------------~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNL------------------------------------------TFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TCEEGGGEECSCCTTCTTC------------------------------------------CEEECTTSCCCEECTTTTT
T ss_pred CCcCCCcchHHhhccCCCC------------------------------------------CEEECCCCcCCccChhhhc
Confidence 999998 477777766555 9999999999999999999
Q ss_pred CCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCC-CCCEEeCCCCcceecCCC
Q 041016 651 SLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ-QLTSLYLSNNKLSGRIPE 719 (757)
Q Consensus 651 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~ 719 (757)
++++|++|++++|++++.+|..|+++++|++|++++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999999999999999999 5676788887 699999999999987664
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-54 Score=493.46 Aligned_cols=510 Identities=22% Similarity=0.235 Sum_probs=427.0
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
+++++|++++|.+++..+ ..|+++++|++|++++|.+++..|.+|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 789999999999985554 7899999999999999999988888999999999999999999988899999999999999
Q ss_pred ccCccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCCC----EEEccC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT----ILALSN 264 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~ 264 (757)
+++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998777889999999999999999986 5689999999999999999999988888777766654 899999
Q ss_pred CCCCCccchhhhcCCCCCEEEccCCccc-cccchhhhccCCCcEEEccCCCCcC------CCcccccCC--cccceeec-
Q 041016 265 NALTGAIPQSIRNMTKLVTLRLDSNVLS-GEISTWLFDLQGMKSLYLGGNKLKW------NDNVSIVPK--CMLTELSL- 334 (757)
Q Consensus 265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~~--~~L~~L~L- 334 (757)
|.+++..+..+... +|++|++++|.++ +..+..+.++++|+.+++..+.+.. .....+... ..++.+++
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 99986655555544 8999999999886 5677888999999998887655442 122222222 23677777
Q ss_pred CCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCcccccc
Q 041016 335 RSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGE 413 (757)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 413 (757)
..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+. |++|++++|.+ +.+| .+ .+++|++|++++|...+.
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 66677777776 8889999999999999864 44 666665 99999999998 6777 44 889999999999965544
Q ss_pred CCcccCCCCCccEEEccCCccccc--ChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhh
Q 041016 414 LPETIGQSTSVMVLMLSSNNFSGH--VPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGV 491 (757)
Q Consensus 414 ~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 491 (757)
. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+.+..+++|++|++++|++.+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-------- 413 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-------- 413 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES--------
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC--------
Confidence 4 567889999999999988866 3788889999999999999888655577778888777777776654
Q ss_pred cccEEEccCCccccccc-hhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcc-ccCcccCCCCCCCEEE
Q 041016 492 TILMLSLSENKFSGQLP-QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG-SITDGLSNLTSLQILD 569 (757)
Q Consensus 492 ~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~ 569 (757)
..| ..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+ .+|..+..+++|++|+
T Consensus 414 --------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 414 --------------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp --------------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred --------------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 333 467789999999999999998899999999999999999999987 4788899999999999
Q ss_pred CcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccc
Q 041016 570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL 649 (757)
Q Consensus 570 ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l 649 (757)
+++|++++..|..|.++++| +.|++++|++++.+|..|
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRL------------------------------------------QLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTC------------------------------------------CEEECCSSCCSCEEGGGT
T ss_pred CCCCcCCccChhhhcccccC------------------------------------------CEEECCCCcCCCcCHHHc
Confidence 99999998888888776655 899999999999999999
Q ss_pred cCCCCCCEEeCCCCCCCccCCcchhCCC-CCCEEeCCCCcCccCCC
Q 041016 650 GSLKGLKSLNLSYNQLQGNIPSTFGNLE-ILETLDLSHNSLSGKIP 694 (757)
Q Consensus 650 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p 694 (757)
+++++|++|++++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus 518 ~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999 5666688887 69999999999987554
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-56 Score=508.33 Aligned_cols=460 Identities=18% Similarity=0.220 Sum_probs=271.3
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCccc---ceeeeCCCCCcccEEEEEcCCCCCCCCcceee
Q 041016 25 CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRW---EMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSV 101 (757)
Q Consensus 25 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w---~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~ 101 (757)
....|+.||.++|.++.++.. ...+..+....+|+.+++||.| .||+|+. .+||++++|++. .+.|.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w--~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~---~~~V~~L~L~~~-----~l~g~ 96 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNW--SQQGFGTQPGANWNFNKELDMWGAQPGVSLNS---NGRVTGLSLEGF-----GASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGC--CCCC------CCCCCSSCGGGTTCCTTEEECT---TCCEEEEECTTS-----CCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCc--ccCCcCCccCCCCCCCCCcccccCCCCeEEcC---CCCEEEEEecCc-----ccCCc
Confidence 345799999999999874321 1111113345689988899999 9999986 389999999997 89999
Q ss_pred ccccccCCCCCCEEeCCCCCC------CC------CCCccccCCCCCCCEEeCCCCcCCCCcCccccC-CCCCCEEEccC
Q 041016 102 VLAPIFRIRSLMTLDLSYNSM------QG------EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSA 168 (757)
Q Consensus 102 ~~~~l~~l~~L~~L~Ls~n~l------~~------~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~ 168 (757)
+++.++++++|++|+|++|.+ .| .+| ... +.+|+ ++++.+.+.+.+|..+.. +..+..+++..
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~-~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS-DEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC-HHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCch-HHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence 999999999999999999976 22 333 111 45566 777777777777666552 11222222221
Q ss_pred CcCCCcccccccCCCCCCEEEcc--CccCCccCchhccCCCCCCEEEccccccccc-----------------cCcccc-
Q 041016 169 NAIEGKLSSRVAGLKNLKQLILD--DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG-----------------IPLSLL- 228 (757)
Q Consensus 169 n~l~~~~~~~~~~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~l~- 228 (757)
..+.. .....++.+.+. .|.+++ +|.+++++++|++|+|++|.+++. +|..++
T Consensus 173 ~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~ 245 (636)
T 4eco_A 173 KSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245 (636)
T ss_dssp CCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred ccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence 11110 011122222222 355665 666666666666666666666654 666666
Q ss_pred -CCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCC-CCC-ccchhhhcC------CCCCEEEccCCccccccch--
Q 041016 229 -QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA-LTG-AIPQSIRNM------TKLVTLRLDSNVLSGEIST-- 297 (757)
Q Consensus 229 -~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~-- 297 (757)
++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|.
T Consensus 246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~ 324 (636)
T 4eco_A 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET 324 (636)
T ss_dssp GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred cccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence 67777777777777666667667777777777777776 666 666666655 67777777777776 5665
Q ss_pred hhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCc-c-
Q 041016 298 WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-N- 375 (757)
Q Consensus 298 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-~- 375 (757)
.+..+++|++|++++|.++ |.+| .+..+++|++|++++|+++ .+|..+..+ .
T Consensus 325 ~l~~l~~L~~L~L~~N~l~------------------------g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~ 378 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLE------------------------GKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQ 378 (636)
T ss_dssp HHTTCTTCCEEECCSCCCE------------------------EECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTT
T ss_pred hhccCCCCCEEeCcCCcCc------------------------cchh-hhCCCCCCCEEECCCCccc-cccHhhhhhccc
Confidence 6667777777777666665 3333 3444444444444444444 222222222 1
Q ss_pred ccEEEcCCCcCCCCCCCCccCC--CCCCEEeCcCccccccCCcccC-------CCCCccEEEccCCcccccChHhhhccC
Q 041016 376 LGTVILSDNMLTGSLPPPLFES--RNLSVLVLSRNNFSGELPETIG-------QSTSVMVLMLSSNNFSGHVPKSISNIY 446 (757)
Q Consensus 376 L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~l~~l~ 446 (757)
|++|++++|+++ .+|..+... ++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+..++
T Consensus 379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~ 457 (636)
T 4eco_A 379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457 (636)
T ss_dssp CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence 333333333333 333333332 2566666666666666666555 556777777777777644444445566
Q ss_pred CCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCc
Q 041016 447 RLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN 526 (757)
Q Consensus 447 ~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 526 (757)
+|++|++++|.++ .+|. ... . ..+..+.++++|++|++++|+
T Consensus 458 ~L~~L~Ls~N~l~-~i~~-----------------------~~~-------------~-~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 458 PLSSINLMGNMLT-EIPK-----------------------NSL-------------K-DENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CCSEEECCSSCCS-BCCS-----------------------SSS-------------E-ETTEECTTGGGCCEEECCSSC
T ss_pred CCCEEECCCCCCC-CcCH-----------------------HHh-------------c-cccccccccCCccEEECcCCc
Confidence 6666666666554 2221 000 0 000112334466666666666
Q ss_pred ccCcchhhcc--CCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCC
Q 041016 527 LTGEFPAFLS--QLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNN 573 (757)
Q Consensus 527 l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n 573 (757)
++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++++|
T Consensus 500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 500 LT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred CC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 66 4555554 56666666666666665 5555666666666666555
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-54 Score=505.17 Aligned_cols=518 Identities=22% Similarity=0.230 Sum_probs=352.3
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCc-CccccCCCCCCEEEccCCcCCCcccccccCCCCCC
Q 041016 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSI-PSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLK 186 (757)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 186 (757)
-.+++++|||++|.+++..| ..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..|..|.++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 34677888888888875555 67788888888888888655555 66778888888888888888777777888888888
Q ss_pred EEEccCccCCccCchh--ccCCCCCCEEEccccccccccC-ccccCCCCCCEEEccCCcCcccCcccccCC--CCCCEEE
Q 041016 187 QLILDDNLIQGQIPAE--IGNLTNLHKLSLRQNKFSGGIP-LSLLQLRKLETLDLQRNSLSGEIPEDIGTL--ANITILA 261 (757)
Q Consensus 187 ~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~ 261 (757)
+|+|++|.+++..|.. |+++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 8888888877655554 7778888888888887776544 467778888888888887777777777666 7777888
Q ss_pred ccCCCCCCccchhhhcCCC------CCEEEccCCccccccchhhhcc---CCCcEEEccCCCCcCCCcccccCCccccee
Q 041016 262 LSNNALTGAIPQSIRNMTK------LVTLRLDSNVLSGEISTWLFDL---QGMKSLYLGGNKLKWNDNVSIVPKCMLTEL 332 (757)
Q Consensus 262 L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 332 (757)
+++|.+.+..|..++.+.+ |++|++++|.+++..+..+... ..++.+.++.+....
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~--------------- 245 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA--------------- 245 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC---------------
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc---------------
Confidence 8887777766666655544 7777777777766666555432 445556555433220
Q ss_pred ecCCccCccCcchhccCC--CCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCcc
Q 041016 333 SLRSCSVRGSIPLWLSTQ--TELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNN 409 (757)
Q Consensus 333 ~L~~~~~~~~~~~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 409 (757)
.+..+.+.+..+..|..+ ++|+.|++++|.+.+..+..+..++ |+.|++++|++.+..|..+..+++|++|++++|.
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 011122222223333333 5666667666666655555555554 5555555555555555555555555555555555
Q ss_pred ccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchh
Q 041016 410 FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF 489 (757)
Q Consensus 410 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 489 (757)
+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++ +..+++
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----i~~~~~------------------- 382 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFIPS------------------- 382 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC----CSSCCS-------------------
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc----ccCCCC-------------------
Confidence 555555555555555555555555554444445555555555555555442 111333
Q ss_pred hhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcc-hhhccCCCCCCEEEccCCcCccccCc-ccCCCCCCCE
Q 041016 490 GVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEF-PAFLSQLSSLQVLNLRNTALEGSITD-GLSNLTSLQI 567 (757)
Q Consensus 490 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~ 567 (757)
++.+++++|+++. +|. ...+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|++
T Consensus 383 ---L~~L~l~~N~l~~-l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~ 455 (844)
T 3j0a_A 383 ---IPDIFLSGNKLVT-LPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455 (844)
T ss_dssp ---CSEEEEESCCCCC-CCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCB
T ss_pred ---cchhccCCCCccc-ccc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccc
Confidence 4455555555542 232 2457888888888887542 33456788999999999998865443 4566889999
Q ss_pred EECcCCcccccCC-----cccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCC
Q 041016 568 LDLSNNNLLGKIP-----SSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS 642 (757)
Q Consensus 568 L~ls~n~l~~~~p-----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~ 642 (757)
|++++|.+++..+ ..|.+ ++.|+.|+|++|+++
T Consensus 456 L~Ls~N~l~~~~~~~~~~~~~~~------------------------------------------l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 456 LFLGENMLQLAWETELCWDVFEG------------------------------------------LSHLQVLYLNHNYLN 493 (844)
T ss_dssp CEEESCCCSSSCCSCCCSSCSSC------------------------------------------BCCEECCCCCHHHHT
T ss_pred ccCCCCccccccccccchhhhcC------------------------------------------cccccEEECCCCccc
Confidence 9999998863322 22322 455688999999999
Q ss_pred CcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016 643 GEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP 718 (757)
Q Consensus 643 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 718 (757)
+..|..|.++++|++|+|++|++++.+|..+. ++|+.|++++|++++.+|..|. +|++|++++|++.+..+
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 99999999999999999999999988887776 8999999999999999998764 78999999999988665
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-53 Score=490.62 Aligned_cols=513 Identities=19% Similarity=0.204 Sum_probs=334.0
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCC-----CC--ccc------------ceeeeCCCCCcccE
Q 041016 23 LCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSS-----DC--CRW------------EMVRCRSRGPSQEV 83 (757)
Q Consensus 23 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~~~v 83 (757)
+++..+|+.||++||+++. + + +|+.+. +| |.| .||+|+. .+||
T Consensus 264 ~~~~~~d~~ALl~~k~~l~---~-~-----------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~---~~~V 325 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD---G-K-----------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN---NGRV 325 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT---G-G-----------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT---TSCE
T ss_pred cccchHHHHHHHHHHHHcC---C-C-----------CCCcCCCcccccCCccccccccccccccCcCceEecC---CCCE
Confidence 3456789999999999985 2 2 464332 55 999 9999986 5899
Q ss_pred EEEEcCCCCCCCCcceeeccccccCCCCCCEEeC-CCCCCCCCCCccccCCCCCCCE-----E---------e-CCCCcC
Q 041016 84 TGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDL-SYNSMQGEVPGTGFANLTRLTY-----L---------D-LKDNNL 147 (757)
Q Consensus 84 ~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~i~~~~~~~l~~L~~-----L---------~-Ls~n~l 147 (757)
++|+|++. .+.|.+|+.++++++|++|+| ++|.++|..|.........+.. + + .....+
T Consensus 326 ~~L~Ls~~-----~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 326 TGLSLAGF-----GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp EEEECTTT-----CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred EEEECccC-----CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 99999997 899999999999999999999 8888877644111000000000 0 0 000000
Q ss_pred CCCc-----------CccccCCCCCCEEEcc--CCcCCCcccccccCCCCCCEEEccCccCCc-----------------
Q 041016 148 NGSI-----------PSQLFNLRYLEFLDLS--ANAIEGKLSSRVAGLKNLKQLILDDNLIQG----------------- 197 (757)
Q Consensus 148 ~~~~-----------p~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------- 197 (757)
.+.+ +........++.+.+. .|.+++ +|..|.++++|++|+|++|.+++
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 0000 0000111122222222 244444 45555555555555555555554
Q ss_pred cCchhcc--CCCCCCEEEccccccccccCccccCCCCCCEEEccCCc-Ccc-cCcccccCCC-------CCCEEEccCCC
Q 041016 198 QIPAEIG--NLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS-LSG-EIPEDIGTLA-------NITILALSNNA 266 (757)
Q Consensus 198 ~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~ 266 (757)
.+|..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++ +|++|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 4777766 88888888888888877888888888888888888887 777 6776665554 88888888888
Q ss_pred CCCccch--hhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016 267 LTGAIPQ--SIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP 344 (757)
Q Consensus 267 l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 344 (757)
++ .+|. .++++++|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-------------------------~lp 611 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-------------------------EIP 611 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-------------------------CCC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-------------------------cch
Confidence 88 6777 7888888888888888887 666 6777777888877777765 456
Q ss_pred hhccCCCC-CCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcc---cC-
Q 041016 345 LWLSTQTE-LTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPET---IG- 419 (757)
Q Consensus 345 ~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~---~~- 419 (757)
.++..+++ |+.|++++|+++ .+|..+.... .++|+.|++++|.+.+.+|.. +.
T Consensus 612 ~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~---------------------~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS---------------------VYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp TTSCEECTTCCEEECCSSCCC-SCCSCCCTTC---------------------SSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred HHHhhccccCCEEECcCCCCC-cCchhhhccc---------------------cCCCCEEECcCCcCCCccccchhhhcc
Confidence 66777777 888888888777 4444333221 122455555555554433321 11
Q ss_pred -CCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEE
Q 041016 420 -QSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLS 497 (757)
Q Consensus 420 -~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 497 (757)
.+++|+.|++++|.++...+..+..+++|+.|++++|.++ .+| ....
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~------------------------------ 718 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK------------------------------ 718 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS------------------------------
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc------------------------------
Confidence 2457888888888887444444457778888877777765 332 1110
Q ss_pred ccCCccccccchhccCCCCCCEEeCcCCcccCcchhhcc--CCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcc
Q 041016 498 LSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLS--QLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575 (757)
Q Consensus 498 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l 575 (757)
..+..+.++++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++|+
T Consensus 719 --------~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~- 787 (876)
T 4ecn_A 719 --------PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR- 787 (876)
T ss_dssp --------CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-
T ss_pred --------cccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-
Confidence 00011334557778888888777 5666665 77778888888877776 67677777777777777764
Q ss_pred cccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCC
Q 041016 576 LGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGL 655 (757)
Q Consensus 576 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L 655 (757)
++++|++.+.+|..|.++++|
T Consensus 788 -----------------------------------------------------------~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 788 -----------------------------------------------------------DAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp -----------------------------------------------------------CTTCCBCCCCCCTTGGGCSSC
T ss_pred -----------------------------------------------------------CcccccccccChHHHhcCCCC
Confidence 245666667777777777777
Q ss_pred CEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcc
Q 041016 656 KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713 (757)
Q Consensus 656 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 713 (757)
++|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+.+|++
T Consensus 809 ~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 809 IQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 7777777777 56666554 5777777777777766665555555555555555543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-52 Score=493.95 Aligned_cols=538 Identities=19% Similarity=0.183 Sum_probs=392.9
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcc-cccccCCCCCCEEEcc
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL-SSRVAGLKNLKQLILD 191 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~ 191 (757)
+..|.++++++ .+| . -.++|++|+|++|.+++..|..|.++++|++|+|++|...+.+ |..|.++++|++|+|+
T Consensus 7 ~~~dcs~~~L~-~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCC-C---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 45677888887 677 3 4578899999999988888888889999999999888655444 7778888888888888
Q ss_pred CccCCccCchhccCCCCCCEEEccccccccccCcc--ccCCCCCCEEEccCCcCcccCc-ccccCCCCCCEEEccCCCCC
Q 041016 192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLS--LLQLRKLETLDLQRNSLSGEIP-EDIGTLANITILALSNNALT 268 (757)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 268 (757)
+|.+++..|.+|+++++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 88888888888888888888888888888766554 7888888888888888876544 46788888888888888888
Q ss_pred CccchhhhcC--CCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchh
Q 041016 269 GAIPQSIRNM--TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346 (757)
Q Consensus 269 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 346 (757)
+..+..+..+ ++|+.|++++|.+.+..+..+..+++ ......|++|++++|.+.+..+..
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~------------------~~~~~~L~~L~Ls~n~l~~~~~~~ 223 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN------------------PFRNMVLEILDVSGNGWTVDITGN 223 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC------------------TTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCC------------------ccccCceeEEecCCCcCchhHHHH
Confidence 7777777766 77888888888777666554444333 000112444444444444555554
Q ss_pred ccC---CCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccC--CCCCCEEeCcCccccccCCcccCCC
Q 041016 347 LST---QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFE--SRNLSVLVLSRNNFSGELPETIGQS 421 (757)
Q Consensus 347 l~~---~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--~~~L~~L~L~~n~l~~~~~~~~~~~ 421 (757)
+.. ...++.+.++.+...... ..+.+.+..+..+.. .++|+.|++++|.+.+..+..+..+
T Consensus 224 ~~~~l~~~~l~~L~l~~~~~~~~~--------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 224 FSNAISKSQAFSLILAHHIMGAGF--------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp GGGTSCSCCBSEEECCSSCCBCSS--------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred HHhhcCcccccceecccccccccc--------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 443 256777777644332111 111222122222222 2567777777777776666667777
Q ss_pred CCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhh--cccEEEc
Q 041016 422 TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGV--TILMLSL 498 (757)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~l 498 (757)
++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+ .+..+++|++|++++|++.+..+..+.. .++.|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 777777777777776666677777777777777777766555 6667777777777777776666555543 3777777
Q ss_pred cCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEECcCCcccc
Q 041016 499 SENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT-DGLSNLTSLQILDLSNNNLLG 577 (757)
Q Consensus 499 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~ 577 (757)
++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++.+... ..+..+++|++|++++|++++
T Consensus 370 s~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 370 RDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp ETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred CCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence 77777643 23789999999999998 45543 5689999999999986432 345689999999999999986
Q ss_pred cCCcc-cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCC-----CcCCccccC
Q 041016 578 KIPSS-FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS-----GEIPSSLGS 651 (757)
Q Consensus 578 ~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~-----~~~p~~l~~ 651 (757)
..+.. +.. ++.|+.|++++|.++ +..+..|.+
T Consensus 441 ~~~~~~~~~------------------------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 441 CSGDQTPSE------------------------------------------NPSLEQLFLGENMLQLAWETELCWDVFEG 478 (844)
T ss_dssp CCSSSSSCS------------------------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred ccccccccc------------------------------------------CCccccccCCCCccccccccccchhhhcC
Confidence 44331 111 455689999999997 445567899
Q ss_pred CCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCcc
Q 041016 652 LKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVI 731 (757)
Q Consensus 652 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~ 731 (757)
+++|++|+|++|++++.+|..|.++++|++|+|++|++++..|..+. ++|++|++++|+++|.+|.. +.++....
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~- 553 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLD- 553 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEE-
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEE-
Confidence 99999999999999999999999999999999999999998887776 89999999999999999965 55666666
Q ss_pred ccCCCCCCCCCC
Q 041016 732 YANNSGLCGMQI 743 (757)
Q Consensus 732 ~~gn~~lc~~~l 743 (757)
+.|||..|.+++
T Consensus 554 l~~Np~~C~c~~ 565 (844)
T 3j0a_A 554 ITHNKFICECEL 565 (844)
T ss_dssp EEEECCCCSSSC
T ss_pred ecCCCccccccc
Confidence 899999996653
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-51 Score=464.33 Aligned_cols=501 Identities=22% Similarity=0.272 Sum_probs=328.7
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL 190 (757)
Q Consensus 111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 190 (757)
++++|++++|.+++..+ .+|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45666666666553322 45566666666666666665554555556666666666666655555555555666666666
Q ss_pred cCccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCC----CEEEccCC
Q 041016 191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI----TILALSNN 265 (757)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L~~n 265 (757)
++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 6665554443345555555555555555554 245555555555555555555555544555544444 45555555
Q ss_pred CCCCccchhhhcCCCCCEEEccCCccc-cccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016 266 ALTGAIPQSIRNMTKLVTLRLDSNVLS-GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP 344 (757)
Q Consensus 266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 344 (757)
.+.+..+..+... +|++|++++|... ..++..+..+++++...+....+..
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------------------------- 239 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------------------------- 239 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------------------------
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC---------------------------
Confidence 5554444444433 4555555544322 1223333444444433332211110
Q ss_pred hhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCC-cCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCC
Q 041016 345 LWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDN-MLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS 423 (757)
Q Consensus 345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 423 (757)
..+++ .+ .......+..+.++.+++.++ .+.+..|..+..+++|++|++++|.++ .+|..+..+ +
T Consensus 240 -----~~~l~--~~-----~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~ 305 (570)
T 2z63_A 240 -----EGNLE--KF-----DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G 305 (570)
T ss_dssp -----CSSCE--EC-----CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C
T ss_pred -----chhhh--hc-----chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C
Confidence 00000 00 000001112223555555555 555566667777778888888887776 466666666 7
Q ss_pred ccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcc
Q 041016 424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKF 503 (757)
Q Consensus 424 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l 503 (757)
|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.
T Consensus 306 L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~------------------- 362 (570)
T 2z63_A 306 WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFK------------------- 362 (570)
T ss_dssp CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEE-------------------
T ss_pred ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcc-------------------
Confidence 888888887776 3333 3567777777777776655444 4556666666665554421
Q ss_pred ccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEECcCCcccccCCcc
Q 041016 504 SGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT-DGLSNLTSLQILDLSNNNLLGKIPSS 582 (757)
Q Consensus 504 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~p~~ 582 (757)
+..+..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..
T Consensus 363 -~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 440 (570)
T 2z63_A 363 -GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440 (570)
T ss_dssp -EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred -ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence 11256788899999999999998865554 8889999999999999987766 57889999999999999998888877
Q ss_pred cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCC-CcCCccccCCCCCCEEeCC
Q 041016 583 FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS-GEIPSSLGSLKGLKSLNLS 661 (757)
Q Consensus 583 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls 661 (757)
+.++++| +.|++++|.++ +.+|..+..+++|++|+++
T Consensus 441 ~~~l~~L------------------------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 441 FNGLSSL------------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp TTTCTTC------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred hhcCCcC------------------------------------------cEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 7666555 88999999997 5789999999999999999
Q ss_pred CCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCC
Q 041016 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP 721 (757)
Q Consensus 662 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 721 (757)
+|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|+++|.+|...
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 999999999999999999999999999999999999999999999999999999998653
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-49 Score=452.87 Aligned_cols=498 Identities=23% Similarity=0.273 Sum_probs=387.8
Q ss_pred CcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCC
Q 041016 79 PSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNL 158 (757)
Q Consensus 79 ~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 158 (757)
...+++.+++++. .+.+..+..|.++++|++|++++|.+++..+ .+|+++++|++|+|++|.+++..|..|+++
T Consensus 26 l~~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 26 LPFSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SCSSCCEEECCSC-----CCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccccEEEccCC-----ccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 3567899999987 7777777899999999999999999985444 889999999999999999998888999999
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCc-cCchhccCCCCCCEEEccccccccccCccccCCCCC----
Q 041016 159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL---- 233 (757)
Q Consensus 159 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L---- 233 (757)
++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..++.+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 999999999999998877789999999999999999987 479999999999999999999998888888888888
Q ss_pred CEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC-ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccC
Q 041016 234 ETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGG 312 (757)
Q Consensus 234 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 312 (757)
++|++++|.+++..+..+... +|+.|++++|.... .++..+..++.++...+....+.. ...++. +.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~~--~~- 247 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLEK--FD- 247 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCEE--CC-
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhhh--cc-
Confidence 899999999998888777766 89999999986443 456778888888877665433221 111111 11
Q ss_pred CCCcCCCcccccCC--cccceeecCCc-cCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCC
Q 041016 313 NKLKWNDNVSIVPK--CMLTELSLRSC-SVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGS 389 (757)
Q Consensus 313 n~l~~~~~~~~~~~--~~L~~L~L~~~-~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 389 (757)
...+... ..++.+++.++ .+.+..|.++..+++|+.|++++|.+. .+|.++....|++|++++|.+. .
T Consensus 248 -------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~-~ 318 (570)
T 2z63_A 248 -------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG-Q 318 (570)
T ss_dssp -------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCS-S
T ss_pred -------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCccc-c
Confidence 1111111 12555666665 555677888888899999999988887 3555555556777777777766 4
Q ss_pred CCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccC--hHhhhccCCCCEEEccCCcccccCCCCCC
Q 041016 390 LPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHV--PKSISNIYRLLVLDLSNNSFSGEFPAFGS 467 (757)
Q Consensus 390 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~~~~~~ 467 (757)
+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+
T Consensus 319 l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~------- 387 (570)
T 2z63_A 319 FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------- 387 (570)
T ss_dssp CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------
T ss_pred cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------
Confidence 443 3566777777777776655443 45667777777777666443 5556666666666555554431
Q ss_pred CCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcch-hhccCCCCCCEEEc
Q 041016 468 DSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNL 546 (757)
Q Consensus 468 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L 546 (757)
. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus 388 --------------------------------------~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 388 --------------------------------------M-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp --------------------------------------E-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred --------------------------------------c-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 2 2236677888888888888876655 46778888888888
Q ss_pred cCCcCccccCcccCCCCCCCEEECcCCccc-ccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccc
Q 041016 547 RNTALEGSITDGLSNLTSLQILDLSNNNLL-GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS 625 (757)
Q Consensus 547 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 625 (757)
++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L------------------------------------ 472 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------------------------------ 472 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC------------------------------------
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC------------------------------------
Confidence 888888888888888889999999999887 5677776665544
Q ss_pred ccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCC
Q 041016 626 KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQ 695 (757)
Q Consensus 626 ~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 695 (757)
+.|++++|++++..|..|..+++|++|++++|++++.+|..|.++++|++|++++|++++..|.
T Consensus 473 ------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 473 ------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8899999999988888999999999999999999998888899999999999999999987764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-49 Score=447.35 Aligned_cols=477 Identities=22% Similarity=0.231 Sum_probs=319.4
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
++|++|++++|.+++..| ..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 678888888888875555 6788888888888888888877777888888888888888888877777788888888888
Q ss_pred ccCccCCc-cCchhccCCCCCCEEEccccccccccC-ccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016 190 LDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIP-LSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL 267 (757)
Q Consensus 190 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 267 (757)
+++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 88888775 345677888888888888887443443 5677777888888888877777777777777777777777776
Q ss_pred CCccchhhhcCCCCCEEEccCCcccccc--c-hhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016 268 TGAIPQSIRNMTKLVTLRLDSNVLSGEI--S-TWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP 344 (757)
Q Consensus 268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 344 (757)
.......+..+++|++|++++|.+++.. + .....+++|+.|++++|.++.... ..++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------------~~l~ 244 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF--------------------NELL 244 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH--------------------HHHH
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH--------------------HHHH
Confidence 5332222345667777777777665431 1 111223445555554444331000 0122
Q ss_pred hhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccC-----CcccC
Q 041016 345 LWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGEL-----PETIG 419 (757)
Q Consensus 345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-----~~~~~ 419 (757)
..+..+++|+.+++++|.+.+..... ......+..+++++.|++.++.+.... +..+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~-----------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFN-----------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCC-----------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred HHhhhhcccccccccccccccccccc-----------------ccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 33455667777777777665431100 001122334556666666666543211 00111
Q ss_pred CCCCccEEEccCCcccccChHhh-hccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEc
Q 041016 420 QSTSVMVLMLSSNNFSGHVPKSI-SNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSL 498 (757)
Q Consensus 420 ~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l 498 (757)
..++|++|++++|.+. .+|..+ ..+++|++|++++|.+++.+ |.
T Consensus 308 ~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------~~----------- 352 (549)
T 2z81_A 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEY-----------------------LK----------- 352 (549)
T ss_dssp HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHH-----------------------HH-----------
T ss_pred hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccc-----------------------cc-----------
Confidence 1234455555555444 233222 33444444444444333211 10
Q ss_pred cCCccccccchhccCCCCCCEEeCcCCcccCcch--hhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCccc
Q 041016 499 SENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP--AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL 576 (757)
Q Consensus 499 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 576 (757)
.+..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus 353 --------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 353 --------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp --------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred --------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 01235677888888888888875433 45778888888888888887 57777888888999999998876
Q ss_pred ccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCC
Q 041016 577 GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLK 656 (757)
Q Consensus 577 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~ 656 (757)
+ +|..+ ++.|+.||+++|++++.+ ..+++|+
T Consensus 424 ~-l~~~~--------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 424 V-VKTCI--------------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp C-CCTTS--------------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred c-ccchh--------------------------------------------cCCceEEECCCCChhhhc----ccCChhc
Confidence 3 22211 234588999999998653 5789999
Q ss_pred EEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016 657 SLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719 (757)
Q Consensus 657 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 719 (757)
+|+|++|+++ .+|. ...+++|++|++++|++++.+|+.+..+++|++|++++|++++..|.
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9999999998 5665 56789999999999999999999999999999999999999998884
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.6e-48 Score=442.45 Aligned_cols=465 Identities=20% Similarity=0.287 Sum_probs=306.4
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCC------C------CcCccccCCCCCCEEEccCCcCCCcccc
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLN------G------SIPSQLFNLRYLEFLDLSANAIEGKLSS 177 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~------~------~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 177 (757)
.+++.|+|+++.+.|.+| .+++++++|++|+|++|.+. + .+|... +..|+ ++++++.+.+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 478889999999999998 78999999999999999762 2 333333 44555 66777766666665
Q ss_pred cccCC-CCCCEEEccCccCCccCchhccCCCCCCEEEcc--ccccccccCccccCCCCCCEEEccCCcCccc--------
Q 041016 178 RVAGL-KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLR--QNKFSGGIPLSLLQLRKLETLDLQRNSLSGE-------- 246 (757)
Q Consensus 178 ~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-------- 246 (757)
.+..+ .++..+++....+. ......++.+.+. .|++++ +|..++++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred hHHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 54321 11222222221111 1112233333333 578888 899999999999999999999985
Q ss_pred ---------Cccccc--CCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCc-ccc-ccchhhhcc------CCCcE
Q 041016 247 ---------IPEDIG--TLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV-LSG-EISTWLFDL------QGMKS 307 (757)
Q Consensus 247 ---------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~ 307 (757)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 899988 99999999999999999999999999999999999998 888 888888776 77777
Q ss_pred EEccCCCCcCCCcccccCCcccceeecCCccCccCcch--hccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCC
Q 041016 308 LYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL--WLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDN 384 (757)
Q Consensus 308 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n 384 (757)
|++++|.++ .+|. .++.+++|++|++++|++.|.+| .+..++ |++|++++|
T Consensus 310 L~L~~n~l~-------------------------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 310 IYIGYNNLK-------------------------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp EECCSSCCS-------------------------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred EECCCCcCC-------------------------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 777777665 5677 88999999999999999998887 666665 777777777
Q ss_pred cCCCCCCCCccCCCC-CCEEeCcCccccccCCcccCCCC--CccEEEccCCcccccChHhhhccCCCCEEEccCCccccc
Q 041016 385 MLTGSLPPPLFESRN-LSVLVLSRNNFSGELPETIGQST--SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE 461 (757)
Q Consensus 385 ~l~~~~~~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 461 (757)
+++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.+|..+..+.
T Consensus 364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~--------------- 426 (636)
T 4eco_A 364 QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD--------------- 426 (636)
T ss_dssp EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC---------------
T ss_pred ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc---------------
Confidence 777 66666777776 777777777776 5565555433 566666666666655554433100
Q ss_pred CCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchh-hccCCCC
Q 041016 462 FPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA-FLSQLSS 540 (757)
Q Consensus 462 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~ 540 (757)
.....+++|++|++++|+++ +..+..+..+++|++|++++|+++ .+|. .+....
T Consensus 427 -~~~~~~~~L~~L~Ls~N~l~----------------------~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~- 481 (636)
T 4eco_A 427 -PTPFKGINVSSINLSNNQIS----------------------KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN- 481 (636)
T ss_dssp -SSCCCCCCEEEEECCSSCCC----------------------SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-
T ss_pred -cccccCCCCCEEECcCCccC----------------------cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-
Confidence 00002223333333333322 122223444566666666666665 3332 222111
Q ss_pred CCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccc--cccccccCCCCCCCCCcccCCccccceeEeeecc
Q 041016 541 LQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG--NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKN 618 (757)
Q Consensus 541 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 618 (757)
..+.++++|++|++++|+++ .+|..+. .+
T Consensus 482 ----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l-------------------------------- 512 (636)
T 4eco_A 482 ----------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL-------------------------------- 512 (636)
T ss_dssp ----------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTC--------------------------------
T ss_pred ----------------ccccccCCccEEECcCCcCC-ccChhhhhccC--------------------------------
Confidence 00111224555555555554 3333332 22
Q ss_pred CccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeC------CCCCCCccCCcchhCCCCCCEEeCCCCcCccC
Q 041016 619 SKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNL------SYNQLQGNIPSTFGNLEILETLDLSHNSLSGK 692 (757)
Q Consensus 619 ~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 692 (757)
+.|+.|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..|..+++|++|+|++|++ +.
T Consensus 513 ----------~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 513 ----------PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK 580 (636)
T ss_dssp ----------TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred ----------CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence 222555555555554 5555556666666666 66788888888888899999999999998 56
Q ss_pred CCCCccCCCCCCEEeCCCCcceec
Q 041016 693 IPQTFAKLQQLTSLYLSNNKLSGR 716 (757)
Q Consensus 693 ~p~~l~~l~~L~~L~ls~N~l~g~ 716 (757)
+|..+. ++|++|++++|++...
T Consensus 581 ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 581 VNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCSCCC--TTCCEEECCSCTTCEE
T ss_pred cCHhHh--CcCCEEECcCCCCccc
Confidence 777665 7899999999987653
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.1e-47 Score=427.73 Aligned_cols=501 Identities=20% Similarity=0.193 Sum_probs=357.1
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
+...+.|.+++.++ .+| ..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 5 ~~~~~c~~~~~~l~-~ip-~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIP-SGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp CTTSEEECTTSCCS-SCC-SCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCceEECCCCccc-ccc-ccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 44455788888887 777 3333 7899999999999988888899999999999999999988888899999999999
Q ss_pred ccCccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccC-cccccCCCCCCEEEccCCCC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEI-PEDIGTLANITILALSNNAL 267 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l 267 (757)
+++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..+..+++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999988777779999999999999999876 35677888899999999988844444 45788888888888888888
Q ss_pred CCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhc
Q 041016 268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL 347 (757)
Q Consensus 268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 347 (757)
++..|..++++++|++|++++|.+.......+..+++|++|++++|.++.... ......
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------~~~~~~ 219 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF---------------------SPLPVD 219 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCC---------------------CCCSSC
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccc---------------------cccchh
Confidence 88888888888888888888887753333333457777788777777662110 001122
Q ss_pred cCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEE
Q 041016 348 STQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVL 427 (757)
Q Consensus 348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 427 (757)
..+++|+.|++++|.+.+..+..+. ..+..+++|+.+++++|.+.+......
T Consensus 220 ~~~~~L~~L~l~~n~l~~~~~~~l~-------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~--------- 271 (549)
T 2z81_A 220 EVSSPMKKLAFRGSVLTDESFNELL-------------------KLLRYILELSEVEFDDCTLNGLGDFNP--------- 271 (549)
T ss_dssp CCCCCCCEEEEESCEEEHHHHHHHH-------------------GGGGGCTTCCEEEEESCEEECCSCCCC---------
T ss_pred hhhhcccceeccccccchhHHHHHH-------------------HHhhhhccccccccccccccccccccc---------
Confidence 3456777777777777654443221 122334556666666665543211000
Q ss_pred EccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcccccc
Q 041016 428 MLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQL 507 (757)
Q Consensus 428 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~ 507 (757)
.....+..+.+|+.+++.++.+.... .+...+.+ ......++.+++++|.+. .+
T Consensus 272 ---------~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~~---------------~~~~~~L~~L~l~~n~l~-~i 325 (549)
T 2z81_A 272 ---------SESDVVSELGKVETVTIRRLHIPQFY-LFYDLSTV---------------YSLLEKVKRITVENSKVF-LV 325 (549)
T ss_dssp ---------CTTTCCCCCTTCCEEEEESCBCSCGG-GSCCCCHH---------------HHHSTTCCEEEEESSCCC-CC
T ss_pred ---------cchhhhhhhcccccccccccccchhh-hcccchhh---------------hhhcccceEEEeccCccc-cC
Confidence 00011223344445544444332110 00000000 001112455556666654 44
Q ss_pred chhc-cCCCCCCEEeCcCCcccCcchh---hccCCCCCCEEEccCCcCccccC--cccCCCCCCCEEECcCCcccccCCc
Q 041016 508 PQNL-SNLSLLQHLDLHDNNLTGEFPA---FLSQLSSLQVLNLRNTALEGSIT--DGLSNLTSLQILDLSNNNLLGKIPS 581 (757)
Q Consensus 508 ~~~~-~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~ls~n~l~~~~p~ 581 (757)
|..+ .++++|++|++++|++++.+|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|.
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 404 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh
Confidence 5444 6799999999999999987753 47889999999999999986543 56889999999999999998 5676
Q ss_pred ccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCC
Q 041016 582 SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS 661 (757)
Q Consensus 582 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 661 (757)
.+..++ .|+.|++++|+++ .+|..+ .++|++|+++
T Consensus 405 ~~~~~~------------------------------------------~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls 439 (549)
T 2z81_A 405 SCQWPE------------------------------------------KMRFLNLSSTGIR-VVKTCI--PQTLEVLDVS 439 (549)
T ss_dssp CCCCCT------------------------------------------TCCEEECTTSCCS-CCCTTS--CTTCSEEECC
T ss_pred hhcccc------------------------------------------cccEEECCCCCcc-cccchh--cCCceEEECC
Confidence 655444 4489999999998 444443 2689999999
Q ss_pred CCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCC-CCCCCCCCCccccCCCCCCC
Q 041016 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES-PQMDRQIDPVIYANNSGLCG 740 (757)
Q Consensus 662 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~gn~~lc~ 740 (757)
+|++++.+ ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+.... +.||+..|.
T Consensus 440 ~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-l~~N~~~~~ 512 (549)
T 2z81_A 440 NNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW-LHTNPWDCS 512 (549)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEE-CCSSCBCCC
T ss_pred CCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEE-ecCCCccCC
Confidence 99999763 57899999999999999 5665 567999999999999999988763 4455555556 899999998
Q ss_pred CC
Q 041016 741 MQ 742 (757)
Q Consensus 741 ~~ 742 (757)
++
T Consensus 513 ~~ 514 (549)
T 2z81_A 513 CP 514 (549)
T ss_dssp HH
T ss_pred Cc
Confidence 65
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.8e-46 Score=426.02 Aligned_cols=517 Identities=23% Similarity=0.249 Sum_probs=373.6
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
+++++|||++|.|+ .+|..+|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 47899999999998 45557899999999999999999977778899999999999999999988888899999999999
Q ss_pred ccCccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCC----CEEEccC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI----TILALSN 264 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L~~ 264 (757)
+++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.++ ..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999997777789999999999999999875 357788889999999999999988888777655443 4678888
Q ss_pred CCCCCccchhhhcCCCCCEEEccCCcccc-ccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCc
Q 041016 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSG-EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSI 343 (757)
Q Consensus 265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 343 (757)
|.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+....... +....
T Consensus 211 n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~------------------l~~~~ 271 (635)
T 4g8a_A 211 NPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN------------------LEKFD 271 (635)
T ss_dssp CCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC------------------CSCCC
T ss_pred CcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc------------------ccccc
Confidence 88875444433 34456777887776543 234456667777666554433221100 00111
Q ss_pred chhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCC
Q 041016 344 PLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS 423 (757)
Q Consensus 344 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 423 (757)
...+.....+...++..+....... ..+..+....+++.+++.++.+.... .+.....
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~--------------------~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~ 329 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLD--------------------GIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFG 329 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEE--------------------ECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCC
T ss_pred ccccccccchhhhhhhhhhhccccc--------------------chhhhhhhhccccccccccccccccc--ccccchh
Confidence 2222333333333333322221111 11122223345555555555544322 2333445
Q ss_pred ccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccC--CCchhhh--cccEEEcc
Q 041016 424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE--VPSSFGV--TILMLSLS 499 (757)
Q Consensus 424 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~--~l~~L~l~ 499 (757)
++.|++.+|.+.+..+. .+..|+.+++..|..... +....+++|+.+++++|.+... .+..+.. .++.+++.
T Consensus 330 L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~ 405 (635)
T 4g8a_A 330 WQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405 (635)
T ss_dssp CSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred hhhhhcccccccCcCcc---cchhhhhcccccccCCCC-cccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence 56666666655433322 344556666666655422 2334456666666666666432 2333222 26777777
Q ss_pred CCccccccchhccCCCCCCEEeCcCCcccCcch-hhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCccc-c
Q 041016 500 ENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL-G 577 (757)
Q Consensus 500 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~-~ 577 (757)
.+.... .+..+..+++|+.+++++|+.....+ ..+..+.+++.++++.|.+.+..+..+..+++|++|++++|.+. +
T Consensus 406 ~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 406 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp SCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence 777664 34567889999999999988765544 46788999999999999999999999999999999999999754 4
Q ss_pred cCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCE
Q 041016 578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKS 657 (757)
Q Consensus 578 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~ 657 (757)
..|..|..+++| +.|||++|++++..|..|+++++|++
T Consensus 485 ~~~~~~~~l~~L------------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 485 FLPDIFTELRNL------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp EECSCCTTCTTC------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCchhhhhcccc------------------------------------------CEEECCCCccCCcChHHHcCCCCCCE
Confidence 566666665544 89999999999999999999999999
Q ss_pred EeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCC-CCCCEEeCCCCccee
Q 041016 658 LNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKL-QQLTSLYLSNNKLSG 715 (757)
Q Consensus 658 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g 715 (757)
|+|++|++++.+|..|.++++|++|||++|++++..|+.|..+ ++|++|++++|++.+
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999999999999999999999999999999999999999988 689999999999986
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-46 Score=418.94 Aligned_cols=454 Identities=22% Similarity=0.217 Sum_probs=337.5
Q ss_pred CEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCC
Q 041016 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN 241 (757)
Q Consensus 162 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 241 (757)
++||+++|.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 467777777774 444443 67777777777777666667777777777777777777666777777777777777777
Q ss_pred cCcccCcccccCCCCCCEEEccCCCCCC-ccchhhhcCCCCCEEEccCCccccccchhhhccCCC--cEEEccCCCCcCC
Q 041016 242 SLSGEIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGM--KSLYLGGNKLKWN 318 (757)
Q Consensus 242 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l~~~ 318 (757)
.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+..
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-
Confidence 776 34444 66677777777777665 355666666666666666666553 233444444 555555444410
Q ss_pred CcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCC-CccCC
Q 041016 319 DNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPP-PLFES 397 (757)
Q Consensus 319 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~ 397 (757)
.+..|..+..+.. + ...+++++|.+.+.++. .+..+
T Consensus 153 ---------------------~~~~~~~l~~l~~-~---------------------~l~l~l~~n~~~~~~~~~~~~~l 189 (520)
T 2z7x_B 153 ---------------------EKEDPEGLQDFNT-E---------------------SLHIVFPTNKEFHFILDVSVKTV 189 (520)
T ss_dssp ---------------------SSCCTTTTTTCCE-E---------------------EEEEECCSSSCCCCCCCCCCTTC
T ss_pred ---------------------ccccccccccccc-c---------------------eEEEEeccCcchhhhhhhhhhcc
Confidence 1334444433321 1 22334445554444433 45567
Q ss_pred CCCCEEeCcCcc-------ccccCCcccCCCCCccEEEccCCcccccChHhhh---ccCCCCEEEccCCcccccCC-CC-
Q 041016 398 RNLSVLVLSRNN-------FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSIS---NIYRLLVLDLSNNSFSGEFP-AF- 465 (757)
Q Consensus 398 ~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~ls~n~l~~~~~-~~- 465 (757)
++|+.+++++|. +.+.++ .+..+++|+.|++++|.+++..+..+. ..++|++|++++|.+++.+| .+
T Consensus 190 ~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 190 ANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp SEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred cceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchh
Confidence 889999999887 666665 688899999999999988765443332 24699999999999998888 55
Q ss_pred ----CCCCcccEEECcCCccccCCC-chhhh-----cccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhc
Q 041016 466 ----GSDSLVGHVDISSNRFSGEVP-SSFGV-----TILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFL 535 (757)
Q Consensus 466 ----~~~~~L~~L~l~~n~l~~~~~-~~~~~-----~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 535 (757)
..++.|+.+++++|.+ .+| ..+.. .++.|++++|.+.... .+..+++|++|++++|++++..|..+
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence 8899999999999999 555 34433 2999999999987543 13689999999999999999899999
Q ss_pred cCCCCCCEEEccCCcCcc--ccCcccCCCCCCCEEECcCCcccccCCcc-cccccccccCCCCCCCCCcccCCcccccee
Q 041016 536 SQLSSLQVLNLRNTALEG--SITDGLSNLTSLQILDLSNNNLLGKIPSS-FGNLQGMIDTPSILPTLPEIFSFPVEIQDL 612 (757)
Q Consensus 536 ~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l 612 (757)
..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..+
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-------------------------- 398 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-------------------------- 398 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC--------------------------
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC--------------------------
Confidence 999999999999999997 56678999999999999999998756643 4333
Q ss_pred EeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccC
Q 041016 613 IVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGK 692 (757)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 692 (757)
+.|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus 399 ----------------~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l 459 (520)
T 2z7x_B 399 ----------------KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV 459 (520)
T ss_dssp ----------------TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred ----------------ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc
Confidence 4459999999999988887765 79999999999999 7788778999999999999999965
Q ss_pred CCCCccCCCCCCEEeCCCCcceecCC
Q 041016 693 IPQTFAKLQQLTSLYLSNNKLSGRIP 718 (757)
Q Consensus 693 ~p~~l~~l~~L~~L~ls~N~l~g~iP 718 (757)
.+..+..+++|++|++++|++++..|
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHhccCCcccEEECcCCCCcccCC
Confidence 44459999999999999999998665
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-46 Score=418.97 Aligned_cols=464 Identities=20% Similarity=0.209 Sum_probs=340.8
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
++||+++|.++ .+| ..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57888888887 677 4344 7888888888888877777888888888888888888887788888888888888888
Q ss_pred ccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCC--CEEEccCCCC--
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI--TILALSNNAL-- 267 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l-- 267 (757)
|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 8887 45554 78888888888888876 467778888888888888888765 345666666 7888888777
Q ss_pred CCccchhhhcCC-CCCEEEccCCccccccch-hhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016 268 TGAIPQSIRNMT-KLVTLRLDSNVLSGEIST-WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL 345 (757)
Q Consensus 268 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 345 (757)
.+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|...... ..+.+.+|
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----------------~~~~~~~~- 214 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC-----------------SYFLSILA- 214 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT-----------------HHHHHHHH-
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc-----------------ceeecchh-
Confidence 666666665554 222445555555443332 2334444444444444310000 00334444
Q ss_pred hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCccc-----CC
Q 041016 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETI-----GQ 420 (757)
Q Consensus 346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-----~~ 420 (757)
.+..+++|+.|++++|.+.+..+..+. .. ...++|++|++++|.+++.+|..+ ..
T Consensus 215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~-------------------~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~ 274 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNIETTWNSFIRIL-------------------QL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274 (520)
T ss_dssp GGGGCTTCCEEEEEEEEEEHHHHHHHH-------------------HH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred hhccccchhhccccccccCHHHHHHHH-------------------HH-hhhCcccEEEeecccccCccccchhhccccc
Confidence 678888888888888877654322111 00 113478888888888887777777 78
Q ss_pred CCCccEEEccCCcccccCh-Hhhhcc---CCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEE
Q 041016 421 STSVMVLMLSSNNFSGHVP-KSISNI---YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILML 496 (757)
Q Consensus 421 ~~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 496 (757)
+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+... +....+++|++|++++|+
T Consensus 275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~---------------- 335 (520)
T 2z7x_B 275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-LCPSKISPFLHLDFSNNL---------------- 335 (520)
T ss_dssp CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-CCCSSCCCCCEEECCSSC----------------
T ss_pred CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-cchhhCCcccEEEeECCc----------------
Confidence 89999999999988 344 556555 6799999999887532 222455566555555554
Q ss_pred EccCCccccccchhccCCCCCCEEeCcCCcccC--cchhhccCCCCCCEEEccCCcCccccCc-ccCCCCCCCEEECcCC
Q 041016 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG--EFPAFLSQLSSLQVLNLRNTALEGSITD-GLSNLTSLQILDLSNN 573 (757)
Q Consensus 497 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n 573 (757)
+++..|..+.++++|++|++++|++++ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|
T Consensus 336 ------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 336 ------LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ------CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred ------cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 445566778889999999999999986 5678899999999999999999985664 5889999999999999
Q ss_pred cccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCC
Q 041016 574 NLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLK 653 (757)
Q Consensus 574 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~ 653 (757)
++++.+|..+. +.|+.||+++|+++ .+|..+..++
T Consensus 410 ~l~~~~~~~l~--------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~ 444 (520)
T 2z7x_B 410 ILTDTIFRCLP--------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLE 444 (520)
T ss_dssp CCCGGGGGSCC--------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred CCCcchhhhhc--------------------------------------------ccCCEEECCCCccc-ccchhhhcCC
Confidence 99877665432 34589999999999 8888888999
Q ss_pred CCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCC
Q 041016 654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694 (757)
Q Consensus 654 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 694 (757)
+|++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus 445 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999999996544459999999999999999987543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-45 Score=424.35 Aligned_cols=442 Identities=19% Similarity=0.247 Sum_probs=236.9
Q ss_pred CCCCEEeCCCCcCCCCcCccccCCCCCCEEEc-cCCcCCCcccccccCC-CCCCE-----EE----------ccCccCCc
Q 041016 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDL-SANAIEGKLSSRVAGL-KNLKQ-----LI----------LDDNLIQG 197 (757)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~l-~~L~~-----L~----------L~~n~l~~ 197 (757)
.+++.|+|+++.+.|.+|++|++|++|++|+| ++|.+.|..+...... ..+.. +. .....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46788888888888888888888888888888 7776655422111000 00000 00 00000000
Q ss_pred cCch-----------hccCCCCCCEEEccc--cccccccCccccCCCCCCEEEccCCcCcc-----------------cC
Q 041016 198 QIPA-----------EIGNLTNLHKLSLRQ--NKFSGGIPLSLLQLRKLETLDLQRNSLSG-----------------EI 247 (757)
Q Consensus 198 ~~p~-----------~~~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~ 247 (757)
..+. .......++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0000 011122233333333 56665 66666666677777777666666 36
Q ss_pred ccccc--CCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCc-ccc-ccchhhhccC-------CCcEEEccCCCCc
Q 041016 248 PEDIG--TLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV-LSG-EISTWLFDLQ-------GMKSLYLGGNKLK 316 (757)
Q Consensus 248 ~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~ 316 (757)
|..++ ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+..++ +|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 66655 67777777777777666667667777777777777776 665 5666555443 3444444333332
Q ss_pred CCCcccccCCcccceeecCCccCccCcch--hccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCC
Q 041016 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPL--WLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPP 393 (757)
Q Consensus 317 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~ 393 (757)
.+|. .+..+++|+.|++++|+++ .+| .+..++ |+.|++++|++. .+|..
T Consensus 562 -------------------------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~ 613 (876)
T 4ecn_A 562 -------------------------EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED 613 (876)
T ss_dssp -------------------------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTT
T ss_pred -------------------------ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHH
Confidence 3444 4555555555555555554 333 222222 333333333333 23333
Q ss_pred ccCCCC-CCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCccc
Q 041016 394 LFESRN-LSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVG 472 (757)
Q Consensus 394 l~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~ 472 (757)
+..+++ |+.|++++|.++ .+|..+...+. ++|+
T Consensus 614 l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~---------------------------------------------~~L~ 647 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV---------------------------------------------YVMG 647 (876)
T ss_dssp SCEECTTCCEEECCSSCCC-SCCSCCCTTCS---------------------------------------------SCEE
T ss_pred HhhccccCCEEECcCCCCC-cCchhhhcccc---------------------------------------------CCCC
Confidence 333333 333333333333 22222222111 1134
Q ss_pred EEECcCCccccCCCchhhhcccEEEccCCccccccchhcc--CCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCc
Q 041016 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLS--NLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA 550 (757)
Q Consensus 473 ~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 550 (757)
.|++++|++.+.+|... ..+. .+++|+.|++++|.++...+..+..+++|++|+|++|+
T Consensus 648 ~L~Ls~N~l~g~ip~l~-------------------~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNIS-------------------CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp EEECCSSCTTTTSSSCS-------------------SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred EEECcCCcCCCccccch-------------------hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 44444444333222100 0001 12344555555555542222223345555555555555
Q ss_pred CccccCcccC--------CCCCCCEEECcCCcccccCCcccc--cccccccCCCCCCCCCcccCCccccceeEeeeccCc
Q 041016 551 LEGSITDGLS--------NLTSLQILDLSNNNLLGKIPSSFG--NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSK 620 (757)
Q Consensus 551 l~~~~~~~l~--------~l~~L~~L~ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 620 (757)
+. .+|..+. ++++|++|+|++|+++ .+|..+. .+
T Consensus 709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l---------------------------------- 752 (876)
T 4ecn_A 709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL---------------------------------- 752 (876)
T ss_dssp CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC----------------------------------
T ss_pred CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC----------------------------------
Confidence 54 2332221 2236666666666665 4454433 22
Q ss_pred cccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCC------CCCCccCCcchhCCCCCCEEeCCCCcCccCCC
Q 041016 621 RGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSY------NQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694 (757)
Q Consensus 621 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 694 (757)
+.|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|.++++|++|+|++|++ +.+|
T Consensus 753 --------~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 753 --------PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp --------TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred --------CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 333666666666665 566666777777777755 889999999999999999999999999 6888
Q ss_pred CCccCCCCCCEEeCCCCcceecCC
Q 041016 695 QTFAKLQQLTSLYLSNNKLSGRIP 718 (757)
Q Consensus 695 ~~l~~l~~L~~L~ls~N~l~g~iP 718 (757)
..+. ++|+.|||++|++...-+
T Consensus 823 ~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 823 EKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp SCCC--SSSCEEECCSCTTCEEEC
T ss_pred Hhhc--CCCCEEECCCCCCCccCh
Confidence 8765 699999999999976544
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-43 Score=406.06 Aligned_cols=524 Identities=22% Similarity=0.221 Sum_probs=394.7
Q ss_pred eeeeCCCC-------CcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCC
Q 041016 71 MVRCRSRG-------PSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLK 143 (757)
Q Consensus 71 gv~c~~~~-------~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls 143 (757)
.|.|..++ .+..++.|||++. .+.+..+.+|.++++|++|||++|.+++ ++..+|+++++|++|+|+
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N-----~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCC-----CCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEcc
Confidence 46786543 3457899999987 7777777899999999999999999984 554889999999999999
Q ss_pred CCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCc-cCchhccCCCCCCEEEccccccccc
Q 041016 144 DNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGG 222 (757)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~ 222 (757)
+|.+++..+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++.
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 999997777789999999999999999999888889999999999999999976 4688899999999999999999988
Q ss_pred cCccccCCCCC----CEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC-ccchhhhcCCCCCEEEccCCcc------
Q 041016 223 IPLSLLQLRKL----ETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDSNVL------ 291 (757)
Q Consensus 223 ~~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l------ 291 (757)
.+..+..+.++ ..++++.|.++...+.. .....++.+++.+|.... ..+..+..+..++...+..+..
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 88887765544 47899999998655544 444567888998887653 3345677788887776643322
Q ss_pred ccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccc
Q 041016 292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWL 371 (757)
Q Consensus 292 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 371 (757)
.......+.....+....+..+...... ...+..+..+.+++.+++.++.+....+ +
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~ 324 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYL---------------------DGIIDLFNCLTNVSSFSLVSVTIERVKD--F 324 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCE---------------------EECTTTTGGGTTCSEEEEESCEEEECGG--G
T ss_pred ccccccccccccchhhhhhhhhhhcccc---------------------cchhhhhhhhcccccccccccccccccc--c
Confidence 2222233344444444444433222110 1122334455666677766666553322 2
Q ss_pred cCc-cccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCccc--ccChHhhhccCCC
Q 041016 372 SEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFS--GHVPKSISNIYRL 448 (757)
Q Consensus 372 ~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L 448 (757)
... .++.+++.+|.+.+..+. .++.|+.+++..|...... ....+++|+.+++++|.+. +..+..+..+.+|
T Consensus 325 ~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 399 (635)
T 4g8a_A 325 SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399 (635)
T ss_dssp GSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred ccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhh
Confidence 222 366677777666543332 3567888888888775433 3446788999999998775 4456777788899
Q ss_pred CEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCccc
Q 041016 449 LVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT 528 (757)
Q Consensus 449 ~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 528 (757)
+.+++..|......+.+..++.|+.++++.+......+ +..|..+++++.++++.|.+.
T Consensus 400 ~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------------------~~~~~~l~~l~~l~ls~n~l~ 458 (635)
T 4g8a_A 400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE---------------------FSVFLSLRNLIYLDISHTHTR 458 (635)
T ss_dssp CEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS---------------------SCTTTTCTTCCEEECTTSCCE
T ss_pred hhhhccccccccccccccccccccchhhhhcccccccc---------------------ccccccccccccccccccccc
Confidence 99999999888776678888888888888776654322 245667888888888888888
Q ss_pred CcchhhccCCCCCCEEEccCCcCc-cccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCcc
Q 041016 529 GEFPAFLSQLSSLQVLNLRNTALE-GSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPV 607 (757)
Q Consensus 529 ~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 607 (757)
+..+..+..+++|++|++++|.+. +..|..|..+++|++|++++|++++..|..|.++++|
T Consensus 459 ~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L------------------ 520 (635)
T 4g8a_A 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------ 520 (635)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------
T ss_pred cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC------------------
Confidence 888888888888888888888744 4567788888888888888888888888877766655
Q ss_pred ccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC-CCCCEEeCCC
Q 041016 608 EIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL-EILETLDLSH 686 (757)
Q Consensus 608 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~ 686 (757)
+.|+|++|+|++..|..|.++++|++|+|++|++++.+|+.|..+ ++|++|+|++
T Consensus 521 ------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 521 ------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp ------------------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred ------------------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 788888888888888888888999999999999998888888887 6899999999
Q ss_pred CcCccC
Q 041016 687 NSLSGK 692 (757)
Q Consensus 687 N~l~~~ 692 (757)
|++...
T Consensus 577 Np~~C~ 582 (635)
T 4g8a_A 577 NDFACT 582 (635)
T ss_dssp CCBCCS
T ss_pred CCCccc
Confidence 888753
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.8e-44 Score=402.98 Aligned_cols=463 Identities=21% Similarity=0.222 Sum_probs=265.5
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
+++|+++|.++ .+| ..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++
T Consensus 34 ~~l~ls~~~L~-~ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLT-HVP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCC-SCC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCc-cCC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 55666666665 355 2222 5666777777766655556666666677777776666666666666666666666666
Q ss_pred ccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCC--CEEEccCCCC--
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI--TILALSNNAL-- 267 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l-- 267 (757)
|.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 6666 34444 56667777777666664 2345666666666666666666542 23333444 6666666666
Q ss_pred CCccchhhhcCC-CCCEEEccCCccccccch-hhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016 268 TGAIPQSIRNMT-KLVTLRLDSNVLSGEIST-WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL 345 (757)
Q Consensus 268 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 345 (757)
++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|..... .+ .....
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l-~~~~~ 243 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RL-MTFLS 243 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HH-HHHHH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hH-HHHHH
Confidence 555555555443 111334555554443322 233445555555555431100 00 01223
Q ss_pred hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCccc-----CC
Q 041016 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETI-----GQ 420 (757)
Q Consensus 346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-----~~ 420 (757)
.+..+++|+.++++++.+.+.....+ +.. ...++|++|++++|.+++.+|..+ ..
T Consensus 244 ~l~~l~~L~~L~L~~~~l~~~~~~~~-------------------~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~ 303 (562)
T 3a79_B 244 ELTRGPTLLNVTLQHIETTWKCSVKL-------------------FQF-FWPRPVEYLNIYNLTITERIDREEFTYSETA 303 (562)
T ss_dssp HHHSCSSCEEEEEEEEEECHHHHHHH-------------------HHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCS
T ss_pred HHhccCcceEEEecCCcCcHHHHHHH-------------------HHh-hhcccccEEEEeccEeeccccchhhhccccc
Confidence 45666677777766665543211100 000 012355556666666555555544 45
Q ss_pred CCCccEEEccCCcccccCh-Hhhhcc---CCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEE
Q 041016 421 STSVMVLMLSSNNFSGHVP-KSISNI---YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILML 496 (757)
Q Consensus 421 ~~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 496 (757)
++.|+.+++..+.+ .+| ..+..+ .+|+.|++++|.+... +.
T Consensus 304 L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-~~-------------------------------- 348 (562)
T 3a79_B 304 LKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHM-VC-------------------------------- 348 (562)
T ss_dssp CCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCC-CC--------------------------------
T ss_pred chheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccc-cC--------------------------------
Confidence 55666666666655 233 333222 4566666666554310 00
Q ss_pred EccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcc--ccCcccCCCCCCCEEECcCCc
Q 041016 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG--SITDGLSNLTSLQILDLSNNN 574 (757)
Q Consensus 497 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~ 574 (757)
...+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|+
T Consensus 349 --------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 349 --------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp --------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred --------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 1345566666666666665556666666666666666666654 223456666666666666666
Q ss_pred ccccCCcc-cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCC
Q 041016 575 LLGKIPSS-FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLK 653 (757)
Q Consensus 575 l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~ 653 (757)
+++.+|.. +..+ +.|+.|++++|++++.+|..+. +
T Consensus 415 l~~~~~~~~~~~l------------------------------------------~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 415 LNSHAYDRTCAWA------------------------------------------ESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CBSCCSSCCCCCC------------------------------------------TTCCEEECCSSCCCGGGGSSCC--T
T ss_pred CCCccChhhhcCc------------------------------------------ccCCEEECCCCCCCcchhhhhc--C
Confidence 66544432 2222 3336667777777666555443 5
Q ss_pred CCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016 654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719 (757)
Q Consensus 654 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 719 (757)
+|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|.
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 7888888888887 5565556888888888888888854444478888888888888888876653
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-41 Score=383.76 Aligned_cols=451 Identities=22% Similarity=0.235 Sum_probs=348.4
Q ss_pred EEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCE
Q 041016 84 TGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEF 163 (757)
Q Consensus 84 ~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 163 (757)
+.+++++. .+.+ +|..+. ++|++|++++|.+++..+ ..|.++++|++|+|++|.+++..|.+|.++++|++
T Consensus 34 ~~l~ls~~-----~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 34 SMVDYSNR-----NLTH-VPKDLP--PRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CEEECTTS-----CCCS-CCTTSC--TTCCEEECCSSCCCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cEEEcCCC-----CCcc-CCCCCC--CCcCEEECCCCCccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 56778775 4443 555443 899999999999985444 88999999999999999999888999999999999
Q ss_pred EEccCCcCCCcccccccCCCCCCEEEccCccCCc-cCchhccCCCCCCEEEccccccccccCccccCCCCC--CEEEccC
Q 041016 164 LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL--ETLDLQR 240 (757)
Q Consensus 164 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~ 240 (757)
|++++|.++. +|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++. .+..+++| ++|++++
T Consensus 105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 9999999994 4544 89999999999999987 3568999999999999999999863 45555666 9999999
Q ss_pred CcC--cccCcccccCCC--CCCEEEccCCCCCCccc-hhhhcCCCCCEEEccCCc-----cccccchhhhccCCCcEEEc
Q 041016 241 NSL--SGEIPEDIGTLA--NITILALSNNALTGAIP-QSIRNMTKLVTLRLDSNV-----LSGEISTWLFDLQGMKSLYL 310 (757)
Q Consensus 241 n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-----l~~~~~~~l~~l~~L~~L~L 310 (757)
|.+ ++..|..+..+. .+ .+++++|.+.+.++ ..+.++++|+.+++++|. +.+ ....+..+++|+.+++
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTL 256 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEE
T ss_pred ccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEe
Confidence 999 888888887765 33 56888888877554 346678899999999985 222 2345778899999999
Q ss_pred cCCCCcCCCcccc---cCCcccceeecCCccCccCcchhc-----cCCCCCCEEEccCCcccCccc-ccc----cCcccc
Q 041016 311 GGNKLKWNDNVSI---VPKCMLTELSLRSCSVRGSIPLWL-----STQTELTFLDLSENELEGTYP-QWL----SELNLG 377 (757)
Q Consensus 311 ~~n~l~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~~----~~~~L~ 377 (757)
.++.+.......+ .....|++|++++|.+.+.+|.++ ..++.|+.+++..+.+ .+| .++ ....++
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence 8887663221111 223479999999999988888877 6677777777777766 334 222 233488
Q ss_pred EEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCccccc--ChHhhhccCCCCEEEccC
Q 041016 378 TVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH--VPKSISNIYRLLVLDLSN 455 (757)
Q Consensus 378 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~ 455 (757)
++++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|++++. +|..+.++++|++|++++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 8999998876332 125678899999999998888888888888999999999988863 356678888888888888
Q ss_pred CcccccCC--CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchh
Q 041016 456 NSFSGEFP--AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533 (757)
Q Consensus 456 n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 533 (757)
|.+++.+| .+..+++|++|++++|++++ ..|..+. ++|++|++++|+++ .+|.
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~l~--~~L~~L~L~~N~l~-~ip~ 467 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTG----------------------SVFRCLP--PKVKVLDLHNNRIM-SIPK 467 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCG----------------------GGGSSCC--TTCSEEECCSSCCC-CCCT
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCc----------------------chhhhhc--CcCCEEECCCCcCc-ccCh
Confidence 88887555 46677777777777766654 3333322 68889999999888 5666
Q ss_pred hccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCC
Q 041016 534 FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIP 580 (757)
Q Consensus 534 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 580 (757)
.+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 468 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 66688999999999999985333448889999999999999886554
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-41 Score=352.10 Aligned_cols=295 Identities=29% Similarity=0.470 Sum_probs=265.8
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCcc--cceeeeCCCCCcccEEEEEcCCCCCCCCccee-
Q 041016 24 CCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCR--WEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTS- 100 (757)
Q Consensus 24 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~- 100 (757)
.|.++|++||++||+++. + + . .+.+|..+++||. |.||+|+.....++|+.++|++. .+.|
T Consensus 2 ~c~~~~~~aL~~~k~~~~---~-~------~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-----~l~~~ 65 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG---N-P------T-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-----NLPKP 65 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT---C-C------G-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-----CCSSC
T ss_pred CCCHHHHHHHHHHHHhcC---C-c------c-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-----CccCC
Confidence 589999999999999985 2 3 2 4678988789998 99999986433389999999987 7778
Q ss_pred -eccccccCCCCCCEEeCCC-CCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccc
Q 041016 101 -VVLAPIFRIRSLMTLDLSY-NSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSR 178 (757)
Q Consensus 101 -~~~~~l~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 178 (757)
.++..+.++++|++|++++ |.+.+.+| ..|+++++|++|++++|.+++.+|..++++++|++|++++|.+.+..|..
T Consensus 66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 66 YPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp EECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccChhHhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 8899999999999999995 99998898 78999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEccCccCCccCchhccCCC-CCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCC
Q 041016 179 VAGLKNLKQLILDDNLIQGQIPAEIGNLT-NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI 257 (757)
Q Consensus 179 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 257 (757)
+.++++|++|++++|.+++.+|..+.+++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 99999999999999999999999999998 999999999999999999999987 9999999999999999999999999
Q ss_pred CEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCc
Q 041016 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSC 337 (757)
Q Consensus 258 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~ 337 (757)
++|++++|.+++..|. +..+++|++|++++|.+++.+|.++..+++|++|++++|+++
T Consensus 224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--------------------- 281 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC--------------------- 281 (313)
T ss_dssp SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE---------------------
T ss_pred CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc---------------------
Confidence 9999999999876665 888999999999999999999999999999999999999887
Q ss_pred cCccCcchhccCCCCCCEEEccCCc
Q 041016 338 SVRGSIPLWLSTQTELTFLDLSENE 362 (757)
Q Consensus 338 ~~~~~~~~~l~~~~~L~~L~l~~n~ 362 (757)
+.+|.. ..+++|+.+++++|.
T Consensus 282 ---~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 282 ---GEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ---EECCCS-TTGGGSCGGGTCSSS
T ss_pred ---ccCCCC-ccccccChHHhcCCC
Confidence 556654 667777777777776
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-39 Score=358.52 Aligned_cols=373 Identities=21% Similarity=0.211 Sum_probs=188.1
Q ss_pred CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcc-cccccCCCCCCEEEccCccCCccCchhccCCCCCCEEE
Q 041016 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL-SSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS 213 (757)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 213 (757)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 44455555555554444444445555555555554443222 33344445555555555554444444455555555555
Q ss_pred ccccccccccCcc--ccCCCCCCEEEccCCcCcccCccc-ccCCCCCCEEEccCCCCCCccchhhhcC--CCCCEEEccC
Q 041016 214 LRQNKFSGGIPLS--LLQLRKLETLDLQRNSLSGEIPED-IGTLANITILALSNNALTGAIPQSIRNM--TKLVTLRLDS 288 (757)
Q Consensus 214 L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~ 288 (757)
+++|.+++..+.. +.++++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 5555544433222 444455555555555544443433 4444445555555544444444444333 3344444444
Q ss_pred CccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCC---CCCCEEEccCCcccC
Q 041016 289 NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ---TELTFLDLSENELEG 365 (757)
Q Consensus 289 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~---~~L~~L~l~~n~l~~ 365 (757)
|.+.+..+..+.. .....+.....|++|++++|.+.+..|..+... ++|+.|++++|...+
T Consensus 190 n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 190 ITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp CBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred Ccccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 4443222211100 000000111122222222222223333333222 445555555444332
Q ss_pred cccccccCccccEEEcCCCcCCCCCCCCcc--CCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhh
Q 041016 366 TYPQWLSELNLGTVILSDNMLTGSLPPPLF--ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSIS 443 (757)
Q Consensus 366 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 443 (757)
... ..+.+.+..+..+. ..++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|.
T Consensus 254 ~~~-------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 254 SSF-------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp CCT-------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccc-------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 210 00111111111111 123455555555555544444444445555555555544444444444
Q ss_pred ccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCc
Q 041016 444 NIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLH 523 (757)
Q Consensus 444 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 523 (757)
.+++|++|++++|++ ++..|..|.++++|++|+++
T Consensus 321 -----------------------~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 321 -----------------------GLTHLLKLNLSQNFL----------------------GSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp -----------------------TCTTCCEEECCSSCC----------------------CEECGGGGTTCTTCCEEECC
T ss_pred -----------------------CcccCCEEECCCCcc----------------------CCcChhHhcCcccCCEEECC
Confidence 444444444444433 23445677888999999999
Q ss_pred CCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCc
Q 041016 524 DNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPS 581 (757)
Q Consensus 524 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~ 581 (757)
+|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999988888899999999999999999987777889999999999999999988773
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-39 Score=355.43 Aligned_cols=393 Identities=22% Similarity=0.235 Sum_probs=267.7
Q ss_pred CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccC-cccccCCCCCCEEEccC
Q 041016 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEI-PEDIGTLANITILALSN 264 (757)
Q Consensus 186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~ 264 (757)
+.++.+++.++ .+|. +. ++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 46777777776 4555 32 67889999999888777888888888999999888886544 56688888888888888
Q ss_pred CCCCCccchhhhcCCCCCEEEccCCccccccchh--hhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccC
Q 041016 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTW--LFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342 (757)
Q Consensus 265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~ 342 (757)
|.+++..|..|+++++|++|++++|.+++..+.. +..+++|++|++++|.++ +.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~~ 144 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK------------------------KI 144 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC------------------------SC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC------------------------cc
Confidence 8888777888888888888888888887655544 667777777777777665 55
Q ss_pred cchh-ccCCCCCCEEEccCCcccCcccccccCc---cccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCccc
Q 041016 343 IPLW-LSTQTELTFLDLSENELEGTYPQWLSEL---NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETI 418 (757)
Q Consensus 343 ~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 418 (757)
.|.. +..+++|++|++++|++.+..+..+..+ .++.+++++|.+.+..+..+. ......+
T Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~ 208 (455)
T 3v47_A 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNP 208 (455)
T ss_dssp CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCT
T ss_pred CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcc----------------ccccccc
Confidence 5554 7888889999998888887777665543 255555555554432221110 0001123
Q ss_pred CCCCCccEEEccCCcccccChHhhhcc---CCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccE
Q 041016 419 GQSTSVMVLMLSSNNFSGHVPKSISNI---YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILM 495 (757)
Q Consensus 419 ~~~~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 495 (757)
..+++|++|++++|.+++..|..+... ++|+.|++++|...+....
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------------------- 257 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------------------------- 257 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-------------------------------
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-------------------------------
Confidence 456788899999998888888777665 5666666666554321110
Q ss_pred EEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcc
Q 041016 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575 (757)
Q Consensus 496 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l 575 (757)
.+.+.+..+..+..+ ..++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 258 ----~~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 258 ----HTNFKDPDNFTFKGL----------------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp ----CCSSCCCCTTTTGGG----------------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ----hhhhccCcccccccc----------------------cccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 011111111111111 123455555555555554555555555555555555555
Q ss_pred cccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCC
Q 041016 576 LGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGL 655 (757)
Q Consensus 576 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L 655 (757)
++..|..|.++++| +.|++++|++++..|..|+++++|
T Consensus 312 ~~~~~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 312 NKIDDNAFWGLTHL------------------------------------------LKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp CEECTTTTTTCTTC------------------------------------------CEEECCSSCCCEECGGGGTTCTTC
T ss_pred cccChhHhcCcccC------------------------------------------CEEECCCCccCCcChhHhcCcccC
Confidence 55555444443333 556666666666667778888899
Q ss_pred CEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCC
Q 041016 656 KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP 721 (757)
Q Consensus 656 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 721 (757)
++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++.+|...
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 999999999998888889999999999999999998777788889999999999999999888643
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-40 Score=360.49 Aligned_cols=424 Identities=21% Similarity=0.262 Sum_probs=194.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL 185 (757)
Q Consensus 106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 185 (757)
-.+.++|++|++++|.+ |.+| .+++++++|++|++++|.++|.+|..++++++|++++++.|.. .++
T Consensus 7 ~~~~~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l 73 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQA 73 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTC
T ss_pred ccccccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCC
Confidence 33457888888888888 6888 7788888888888888888888888888888876666665532 356
Q ss_pred CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN 265 (757)
Q Consensus 186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 265 (757)
++|++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++. +.. .++|++|++++|
T Consensus 74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n 141 (454)
T 1jl5_A 74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNN 141 (454)
T ss_dssp SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSS
T ss_pred CEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCC
Confidence 777777777764 3331 2567777777777775 4532 36677777777776642 211 146677777777
Q ss_pred CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016 266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL 345 (757)
Q Consensus 266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 345 (757)
.+++ +| .++++++|++|++++|++++ +|.. ..+|++|++++|.++ + +|
T Consensus 142 ~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~------------------------~-l~- 189 (454)
T 1jl5_A 142 QLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE------------------------E-LP- 189 (454)
T ss_dssp CCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS------------------------S-CC-
T ss_pred CCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC------------------------c-Cc-
Confidence 6664 44 46666666666666666653 3322 134555555555444 3 34
Q ss_pred hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM 425 (757)
Q Consensus 346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 425 (757)
.++.+++|++|++++|++++ +|... ++|++|++++|.++ .+| .++.+++|+
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~-l~~~~--------------------------~~L~~L~l~~n~l~-~lp-~~~~l~~L~ 240 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKK-LPDLP--------------------------LSLESIVAGNNILE-ELP-ELQNLPFLT 240 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCCCC--------------------------TTCCEEECCSSCCS-SCC-CCTTCTTCC
T ss_pred cccCCCCCCEEECCCCcCCc-CCCCc--------------------------CcccEEECcCCcCC-ccc-ccCCCCCCC
Confidence 46777777777777777764 22211 24444444444444 233 244444555
Q ss_pred EEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcccc
Q 041016 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSG 505 (757)
Q Consensus 426 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~ 505 (757)
+|++++|++++ +|. ..++|+.|++++|.+++ +|.. .++|++|++++|++++..
T Consensus 241 ~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l~-------------------- 293 (454)
T 1jl5_A 241 TIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGLS-------------------- 293 (454)
T ss_dssp EEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEES--------------------
T ss_pred EEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCccc--------------------
Confidence 55555554443 221 12345555555555443 2211 134444444444443310
Q ss_pred ccchhccCCCCCCEEeCcCCcccCcchhhccCC-CCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccc
Q 041016 506 QLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQL-SSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG 584 (757)
Q Consensus 506 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 584 (757)
.. .++|++|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|.+++ +|.
T Consensus 294 ~~------~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~--- 354 (454)
T 1jl5_A 294 EL------PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE--- 354 (454)
T ss_dssp CC------CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---
T ss_pred Cc------CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---
Confidence 01 1355666666666553 11 12 366666666666664 3332 4666777777776652 333
Q ss_pred cccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCC--cCCccccCCCCCCEEeCCC
Q 041016 585 NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSG--EIPSSLGSLKGLKSLNLSY 662 (757)
Q Consensus 585 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~ 662 (757)
. ++.|+.|++++|++++ .+|..+++ ++.
T Consensus 355 ~------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~ 384 (454)
T 1jl5_A 355 L------------------------------------------PQNLKQLHVEYNPLREFPDIPESVED--------LRM 384 (454)
T ss_dssp C------------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCE--------EEC
T ss_pred h------------------------------------------hhhccEEECCCCCCCcCCCChHHHHh--------hhh
Confidence 0 2334667777777766 45554432 234
Q ss_pred CCCCccCCcchhCCCCCCEEeCCCCcCcc--CCCCCccCCCCCCEEeCCCCcceecCCCC
Q 041016 663 NQLQGNIPSTFGNLEILETLDLSHNSLSG--KIPQTFAKLQQLTSLYLSNNKLSGRIPES 720 (757)
Q Consensus 663 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 720 (757)
|.+.+.+|.. +++|++|++++|.+++ .+|. +++.|.+.+|.+.+.+|..
T Consensus 385 n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 385 NSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp CC----------------------------------------------------------
T ss_pred cccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccC
Confidence 5666666653 4678888888888876 4553 4566778888888877754
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5e-40 Score=358.60 Aligned_cols=402 Identities=24% Similarity=0.340 Sum_probs=182.5
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEc
Q 041016 159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDL 238 (757)
Q Consensus 159 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 238 (757)
++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++..|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 4555555555555 34444455555555555555555444555555444444444443321 23466666
Q ss_pred cCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCC
Q 041016 239 QRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWN 318 (757)
Q Consensus 239 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 318 (757)
++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++
T Consensus 79 ~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~-------------- 132 (454)
T 1jl5_A 79 NNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPL-------------- 132 (454)
T ss_dssp TTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTT--------------
T ss_pred cCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCC--------------
Confidence 6666553 2221 2455555555555554 3322 2445555555554442 1110 023
Q ss_pred CcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCC
Q 041016 319 DNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESR 398 (757)
Q Consensus 319 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 398 (757)
|++|++++|++++ +| .++.+++|++|++++|++++ +|..+. .|++|++++|++++ +| .+..++
T Consensus 133 ----------L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~--~L~~L~L~~n~l~~-l~-~~~~l~ 195 (454)
T 1jl5_A 133 ----------LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPP--SLEFIAAGNNQLEE-LP-ELQNLP 195 (454)
T ss_dssp ----------CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCCSS-CC-CCTTCT
T ss_pred ----------CCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcc--cccEEECcCCcCCc-Cc-cccCCC
Confidence 4444444444444 55 47777888888888887774 333221 24555555555443 23 344445
Q ss_pred CCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcC
Q 041016 399 NLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISS 478 (757)
Q Consensus 399 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~ 478 (757)
+|++|++++|.+++ +|.. . ++|++|++++|.+. .+|.+..+++|++|++++
T Consensus 196 ~L~~L~l~~N~l~~-l~~~---~------------------------~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 196 FLTAIYADNNSLKK-LPDL---P------------------------LSLESIVAGNNILE-ELPELQNLPFLTTIYADN 246 (454)
T ss_dssp TCCEEECCSSCCSS-CCCC---C------------------------TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCCc-CCCC---c------------------------CcccEEECcCCcCC-cccccCCCCCCCEEECCC
Confidence 55555555555443 2211 1 24555555555544 344444555555555555
Q ss_pred CccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcc
Q 041016 479 NRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG 558 (757)
Q Consensus 479 n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 558 (757)
|++++. |. ....++.|++++|++++ +|.. .++|++|++++|++++. |. -.++|++|++++|++++. +
T Consensus 247 N~l~~l-~~-~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~-- 313 (454)
T 1jl5_A 247 NLLKTL-PD-LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-C-- 313 (454)
T ss_dssp SCCSSC-CS-CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-C--
T ss_pred CcCCcc-cc-cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-c--
Confidence 555432 11 11235555555555554 2322 36777888888877752 21 125777888888777642 2
Q ss_pred cCCC-CCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECc
Q 041016 559 LSNL-TSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLS 637 (757)
Q Consensus 559 l~~l-~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls 637 (757)
.+ ++|++|++++|++++ +|.. ++.|+.|+++
T Consensus 314 --~~~~~L~~L~Ls~N~l~~-lp~~---------------------------------------------~~~L~~L~L~ 345 (454)
T 1jl5_A 314 --DLPPSLEELNVSNNKLIE-LPAL---------------------------------------------PPRLERLIAS 345 (454)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCCC---------------------------------------------CTTCCEEECC
T ss_pred --CCcCcCCEEECCCCcccc-cccc---------------------------------------------CCcCCEEECC
Confidence 22 477777777777764 3432 2334677777
Q ss_pred CCCCCCcCCccccCCCCCCEEeCCCCCCCc--cCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016 638 NNQLSGEIPSSLGSLKGLKSLNLSYNQLQG--NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715 (757)
Q Consensus 638 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 715 (757)
+|+++ .+|. .+++|++|++++|++++ .+|..++. ++.|.+.+.+|.. +++|++|++++|+++|
T Consensus 346 ~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 346 FNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE 410 (454)
T ss_dssp SSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------
T ss_pred CCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence 77777 4554 36777777777777776 55554432 2345566666653 4789999999999998
Q ss_pred --cCCCC
Q 041016 716 --RIPES 720 (757)
Q Consensus 716 --~iP~~ 720 (757)
.||..
T Consensus 411 ~~~iP~s 417 (454)
T 1jl5_A 411 FPDIPES 417 (454)
T ss_dssp -------
T ss_pred cccchhh
Confidence 88864
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-36 Score=331.54 Aligned_cols=130 Identities=25% Similarity=0.245 Sum_probs=78.3
Q ss_pred CCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCcc
Q 041016 147 LNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLS 226 (757)
Q Consensus 147 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 226 (757)
..+..+..++++++|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3344455666777777777777777654 3 566677777777777776653 2 66666667777766666643 2
Q ss_pred ccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCc
Q 041016 227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290 (757)
Q Consensus 227 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 290 (757)
++++++|++|++++|.+++. + ++.+++|++|++++|.+++. .++++++|++|++++|.
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCS
T ss_pred cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCC
Confidence 56666666666666666542 2 55566666666666655542 14444555555555543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-36 Score=332.16 Aligned_cols=169 Identities=22% Similarity=0.227 Sum_probs=132.5
Q ss_pred cccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCC
Q 041016 129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTN 208 (757)
Q Consensus 129 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 208 (757)
..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. + ++.+++|++|++++|.+++. + ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 4678889999999999999854 5 688999999999999999875 2 88899999999999999864 3 888999
Q ss_pred CCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccC
Q 041016 209 LHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDS 288 (757)
Q Consensus 209 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 288 (757)
|++|++++|.+++ +| ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 108 L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 9999999999986 34 88899999999999999874 3788999999999999655444 366677777777777
Q ss_pred CccccccchhhhccCCCcEEEccCCCCc
Q 041016 289 NVLSGEISTWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 289 n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 316 (757)
|.+++ +| +..+++|+.|++++|.++
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCC
Confidence 77664 22 445555555555555444
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-35 Score=325.72 Aligned_cols=346 Identities=29% Similarity=0.370 Sum_probs=219.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ 187 (757)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 187 (757)
.+++++.|+++++.+. .+| .+..+++|++|++++|.+++..| +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 4667888888888876 455 37778888888888888885433 8888888888888888876655 788888888
Q ss_pred EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016 188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL 267 (757)
Q Consensus 188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 267 (757)
|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+.++++|++|+++ |.+.+.. .+.++++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 8888888875432 7788888888888888774 33 47777888888875 3444332 367777777777777776
Q ss_pred CCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhc
Q 041016 268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL 347 (757)
Q Consensus 268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 347 (757)
.+. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.++ + + ..+
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~------------------------~-~-~~l 239 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK------------------------D-I-GTL 239 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC------------------------C-C-GGG
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc------------------------c-c-hhh
Confidence 643 236666677777777666665443 455566666666655544 1 1 234
Q ss_pred cCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEE
Q 041016 348 STQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVL 427 (757)
Q Consensus 348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 427 (757)
..+++|+.|++++|.+.+.. + +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLA-----------------------P--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCG-----------------------G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hcCCCCCEEECCCCccccch-----------------------h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 55666666666666655321 1 4456677777777777765433 6667777777
Q ss_pred EccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcccccc
Q 041016 428 MLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQL 507 (757)
Q Consensus 428 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~ 507 (757)
++++|++.+..+ +..+++|+.|++++|.+++..| +..+++|++|++++|+++ +.
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~----------------------~~- 346 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVS----------------------DV- 346 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCC----------------------CC-
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccC----------------------Cc-
Confidence 777777765433 5566666666666666554332 333444444444443332 21
Q ss_pred chhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcc
Q 041016 508 PQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG 553 (757)
Q Consensus 508 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 553 (757)
..+.++++|++|++++|++++..| +..+++|++|++++|++++
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 234455555555555555554444 4555555555555555553
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.1e-35 Score=320.20 Aligned_cols=343 Identities=28% Similarity=0.373 Sum_probs=247.2
Q ss_pred ccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCC
Q 041016 81 QEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRY 160 (757)
Q Consensus 81 ~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 160 (757)
.+++.+++++. .+.. + +.+..+++|++|++++|.+++ ++ . +.++++|++|++++|.+++..+ ++++++
T Consensus 46 ~~l~~L~l~~~-----~i~~-l-~~~~~l~~L~~L~Ls~n~l~~-~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRL-----GIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-P-LKNLTKLVDILMNNNQIADITP--LANLTN 113 (466)
T ss_dssp HTCCEEECCSS-----CCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred ccccEEecCCC-----CCcc-C-cchhhhcCCCEEECCCCccCC-ch-h-hhccccCCEEECCCCccccChh--hcCCCC
Confidence 56889999875 3332 2 347889999999999999984 44 3 9999999999999999996554 999999
Q ss_pred CCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccC
Q 041016 161 LEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQR 240 (757)
Q Consensus 161 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 240 (757)
|++|++++|.+++..+ +.++++|++|++++|.+.+ ++ .++.+++|++|+++ |.+.+.. .+.++++|++|++++
T Consensus 114 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISS 186 (466)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcC
Confidence 9999999999997654 8999999999999999985 33 59999999999997 4555333 389999999999999
Q ss_pred CcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCc
Q 041016 241 NSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDN 320 (757)
Q Consensus 241 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 320 (757)
|.+++. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+++. ..+..+++|++|++++|.++....
T Consensus 187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence 999854 458899999999999999997655 78899999999999999853 457889999999999998873322
Q ss_pred ccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCC
Q 041016 321 VSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRN 399 (757)
Q Consensus 321 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~ 399 (757)
+..+++|+.|++++|.+.+..+ +..++ |++|++++|++.+..+ +..+++
T Consensus 261 --------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 310 (466)
T 1o6v_A 261 --------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 310 (466)
T ss_dssp --------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred --------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence 4444555555555555543322 22232 4444444444443222 445556
Q ss_pred CCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCC
Q 041016 400 LSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSN 479 (757)
Q Consensus 400 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n 479 (757)
|++|++++|++++..+ +..+++|++|++++|.+++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCE
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCC
Confidence 6666666666655443 44556666666666665543 245556666666666666655544 555556666666655
Q ss_pred cccc
Q 041016 480 RFSG 483 (757)
Q Consensus 480 ~l~~ 483 (757)
++++
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 5554
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=328.07 Aligned_cols=343 Identities=20% Similarity=0.200 Sum_probs=219.0
Q ss_pred ceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCc
Q 041016 330 TELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRN 408 (757)
Q Consensus 330 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 408 (757)
+.++.+++.++ .+|..+ .++++.|++++|++++..+..|..++ |++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 35666666655 345433 24677777777777766666666665 667777766666666666666666666666666
Q ss_pred cccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCc
Q 041016 409 NFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPS 487 (757)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~ 487 (757)
.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+ .+..+++|++|++++|+++
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----
Confidence 6665555556666666666666666666666666666666666666666665544 5556666666555555554
Q ss_pred hhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCE
Q 041016 488 SFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQI 567 (757)
Q Consensus 488 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 567 (757)
+..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+.+.++.......+|++
T Consensus 166 -----------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 228 (477)
T 2id5_A 166 -----------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228 (477)
T ss_dssp -----------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSE
T ss_pred -----------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccE
Confidence 344445666677777777777766666666666777777777776666666655555556777
Q ss_pred EECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCc
Q 041016 568 LDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPS 647 (757)
Q Consensus 568 L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~ 647 (757)
|++++|.+++..+..+..++ .|+.|+|++|.+++..+.
T Consensus 229 L~l~~n~l~~~~~~~~~~l~------------------------------------------~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLV------------------------------------------YLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCT------------------------------------------TCCEEECCSSCCCEECTT
T ss_pred EECcCCcccccCHHHhcCcc------------------------------------------ccCeeECCCCcCCccChh
Confidence 77777766633223343333 336777777777766666
Q ss_pred cccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCC
Q 041016 648 SLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQI 727 (757)
Q Consensus 648 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 727 (757)
.|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.+..+....+....
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~ 346 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRW 346 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTT
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhh
Confidence 67777777777777777777777777777777777777777777666667777777777777777765433221111222
Q ss_pred CCccccCCCCCCC
Q 041016 728 DPVIYANNSGLCG 740 (757)
Q Consensus 728 ~~~~~~gn~~lc~ 740 (757)
... |.++...|+
T Consensus 347 ~~~-~~~~~~~C~ 358 (477)
T 2id5_A 347 RLN-FNRQQPTCA 358 (477)
T ss_dssp SSC-CTTCCCBEE
T ss_pred ccc-cCccCceeC
Confidence 223 555555564
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=325.43 Aligned_cols=303 Identities=21% Similarity=0.204 Sum_probs=189.2
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
+++++|+|++|.+++..+ ..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 466677777777664333 5666677777777777776666666666777777777777766665555666666666666
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG 269 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 269 (757)
+++|.+.+..|..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 66666666666666666666666666666666656666666666666666666665555556666666666666666665
Q ss_pred ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccC
Q 041016 270 AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLST 349 (757)
Q Consensus 270 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 349 (757)
..+..|..+++|++|++++|...+.++.......+|++|++++|.++ +..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~------------------------~~~~~~~~~ 246 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT------------------------AVPYLAVRH 246 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC------------------------SCCHHHHTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc------------------------ccCHHHhcC
Confidence 55555666666666666665555444444444444444444444443 333345666
Q ss_pred CCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEc
Q 041016 350 QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLML 429 (757)
Q Consensus 350 ~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 429 (757)
+++|+.|++++|.+++..+ ..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEG-----------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CTTCCEEECCSSCCCEECT-----------------------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ccccCeeECCCCcCCccCh-----------------------hhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 6777777777766664433 34445566666666666666666666666666666666
Q ss_pred cCCcccccChHhhhccCCCCEEEccCCcccc
Q 041016 430 SSNNFSGHVPKSISNIYRLLVLDLSNNSFSG 460 (757)
Q Consensus 430 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 460 (757)
++|++++..+..|..+++|+.|++++|++..
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 6666666555556666666666666666653
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-34 Score=307.21 Aligned_cols=313 Identities=20% Similarity=0.216 Sum_probs=211.6
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCC
Q 041016 107 FRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLK 186 (757)
Q Consensus 107 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 186 (757)
..++++++|++++|.++ .+|...|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 35678888888888876 56656678888888888888888876667888888888888888888877777788888888
Q ss_pred EEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCC
Q 041016 187 QLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA 266 (757)
Q Consensus 187 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 266 (757)
+|++++|.++...+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++. .+..+++|++|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 888888888754444567788888888888888777677777788888888888877654 24556777777777776
Q ss_pred CCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchh
Q 041016 267 LTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346 (757)
Q Consensus 267 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 346 (757)
+++. ...++|++|++++|.+... +. ...++|+.|++++|.++ +. .+
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~------------------------~~--~~ 243 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLT------------------------DT--AW 243 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCC------------------------CC--GG
T ss_pred cccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCc------------------------cc--HH
Confidence 6532 2234566666666665532 21 11244455555544443 32 34
Q ss_pred ccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccE
Q 041016 347 LSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMV 426 (757)
Q Consensus 347 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 426 (757)
+..+++|++|++++|.+.+..|. .+..+++|++|++++|++++ ++..+..+++|++
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYH-----------------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 299 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESG-----------------------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCE
T ss_pred HcCCCCccEEECCCCcCCCcChh-----------------------HccccccCCEEECCCCcCcc-cCcccCCCCCCCE
Confidence 56666666666666666544333 34445566666666666654 3444455667777
Q ss_pred EEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccC
Q 041016 427 LMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE 484 (757)
Q Consensus 427 L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 484 (757)
|++++|+++ .+|..+..+++|+.|++++|.++.. + +..+++|++|++++|++...
T Consensus 300 L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccch
Confidence 777777766 4455566777777777777776543 2 55667777777777777653
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.8e-35 Score=302.09 Aligned_cols=199 Identities=34% Similarity=0.572 Sum_probs=179.3
Q ss_pred ccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCC-CCCEEECcCCcccccCCcc
Q 041016 504 SGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLT-SLQILDLSNNNLLGKIPSS 582 (757)
Q Consensus 504 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~~~~p~~ 582 (757)
++.+|..|.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..
T Consensus 114 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 345566777888999999999999888888899999999999999999988998898888 8999999999999888888
Q ss_pred cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCC
Q 041016 583 FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSY 662 (757)
Q Consensus 583 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 662 (757)
+..+. | +.|++++|++++.+|..|..+++|++|++++
T Consensus 194 ~~~l~-L------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 194 FANLN-L------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp GGGCC-C------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred HhCCc-c------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 76653 3 8899999999999999999999999999999
Q ss_pred CCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCCCCC
Q 041016 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQ 742 (757)
Q Consensus 663 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc~~~ 742 (757)
|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+++.++.... +.||+.+||.|
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~-l~~N~~lc~~p 308 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCLCGSP 308 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG-TCSSSEEESTT
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH-hcCCCCccCCC
Confidence 999987776 8889999999999999999999999999999999999999999999998888888888 99999999998
Q ss_pred CCCCCC
Q 041016 743 IQVVCP 748 (757)
Q Consensus 743 l~~~c~ 748 (757)
+. .|+
T Consensus 309 ~~-~C~ 313 (313)
T 1ogq_A 309 LP-ACT 313 (313)
T ss_dssp SS-CCC
T ss_pred CC-CCC
Confidence 85 674
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-33 Score=321.28 Aligned_cols=349 Identities=19% Similarity=0.205 Sum_probs=225.5
Q ss_pred CCCCCCCCCCCcc----cceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCcccc
Q 041016 56 GLETWNSSSDCCR----WEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGF 131 (757)
Q Consensus 56 ~~~~w~~~~~~c~----w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~ 131 (757)
.+++|..+.+||. |.++.|+. + ++-... . ......-..+++++.+++++|.+. .+|...|
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~-----~---i~~~~~-----~--~~~~~~~l~l~~l~~l~l~~~~l~-~lp~~~~ 71 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDV-----H---IDMQTQ-----D--VYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 71 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSC-----E---ECSSCC-----C--CEESCSSGGGCCCSEEEESSCEES-EECTHHH
T ss_pred cccCCCCCCcCcccCcCceeEecCc-----e---eccccc-----c--cccCcccccCCCceEEEeeCCCCC-CcCHHHH
Confidence 4678988777874 66655542 1 111110 0 011112234677888888888876 5665667
Q ss_pred CCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016 132 ANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK 211 (757)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 211 (757)
.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 88888888888888888777778888888888888888888877777888888888888888888655555678888888
Q ss_pred EEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcc
Q 041016 212 LSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL 291 (757)
Q Consensus 212 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 291 (757)
|++++|.+++..|..|.++++|++|++++|.+++. .+..+++|+.|++++|.+++. ....+|+.|++++|.+
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSI 223 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcc
Confidence 88888888777777777888888888888877754 245566777777777766532 2334566666666665
Q ss_pred ccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccc
Q 041016 292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWL 371 (757)
Q Consensus 292 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 371 (757)
....+.. .++|+.|++++|.++ + +.++..+++|+.|++++|.+.+..|.
T Consensus 224 ~~~~~~~---~~~L~~L~L~~n~l~------------------------~--~~~l~~l~~L~~L~Ls~N~l~~~~~~-- 272 (597)
T 3oja_B 224 NVVRGPV---NVELTILKLQHNNLT------------------------D--TAWLLNYPGLVEVDLSYNELEKIMYH-- 272 (597)
T ss_dssp CEEECSC---CSCCCEEECCSSCCC------------------------C--CGGGGGCTTCSEEECCSSCCCEEESG--
T ss_pred ccccccc---CCCCCEEECCCCCCC------------------------C--ChhhccCCCCCEEECCCCccCCCCHH--
Confidence 5322211 134444444444443 3 24556666666666666666554443
Q ss_pred cCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEE
Q 041016 372 SELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVL 451 (757)
Q Consensus 372 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 451 (757)
.+..+++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus 273 ---------------------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 273 ---------------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp ---------------------GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred ---------------------HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 34445566666666666654 3444555666777777777666 455566667777777
Q ss_pred EccCCcccccCCCCCCCCcccEEECcCCccccC
Q 041016 452 DLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE 484 (757)
Q Consensus 452 ~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 484 (757)
++++|.+++. .+..++.|+.|++++|++.+.
T Consensus 330 ~L~~N~l~~~--~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 330 YLDHNSIVTL--KLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECCSSCCCCC--CCCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCCCCCc--ChhhcCCCCEEEeeCCCCCCh
Confidence 7777776543 255566777777777776654
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.2e-33 Score=299.10 Aligned_cols=315 Identities=22% Similarity=0.237 Sum_probs=197.3
Q ss_pred hhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCC
Q 041016 345 LWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS 423 (757)
Q Consensus 345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 423 (757)
..+..+++|++|++++|.+.+..+..+..+. |++|++++|.+.+..|..+..+++|++|++++|.+++..+..|..+++
T Consensus 63 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 3345555666666666555544444444443 444444444444444444555555555555555555333333455555
Q ss_pred ccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcc
Q 041016 424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKF 503 (757)
Q Consensus 424 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l 503 (757)
|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..++.|+.+++++| .+
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n----------------------~l 198 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN----------------------LL 198 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS----------------------CC
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc----------------------cc
Confidence 55555555555554455555555555555555554432 1223344444444444 33
Q ss_pred ccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCccc
Q 041016 504 SGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSF 583 (757)
Q Consensus 504 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~ 583 (757)
++. ...++|++|++++|.+... |.. ..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..|
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 321 2234677777777777643 322 246777777777777643 456777777777777777777666666
Q ss_pred ccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCC
Q 041016 584 GNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYN 663 (757)
Q Consensus 584 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 663 (757)
..+++| +.|++++|++++ +|..+..+++|++|++++|
T Consensus 269 ~~l~~L------------------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 269 VKMQRL------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp TTCSSC------------------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred cccccC------------------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 555444 777888888774 4556678899999999999
Q ss_pred CCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCCCCC
Q 041016 664 QLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQ 742 (757)
Q Consensus 664 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc~~~ 742 (757)
+++ .+|..+..+++|++|++++|.++... +..+++|++|++++|++.+.-. ...+..+.... +.+++..|+.+
T Consensus 306 ~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~-~~~~~~~c~~~ 378 (390)
T 3o6n_A 306 HLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPA-VDDADQHCKID 378 (390)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTT-BCCCCSCCCTT
T ss_pred cce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH-HHHHHHHHhhc-ccccCceeccc
Confidence 998 55667889999999999999998652 6778999999999999987432 23345555566 78888888754
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-33 Score=316.22 Aligned_cols=319 Identities=22% Similarity=0.222 Sum_probs=211.7
Q ss_pred cCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccC
Q 041016 341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIG 419 (757)
Q Consensus 341 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 419 (757)
...+..+..+++|++|++++|.+.+..+..+..+. |++|++++|.+++..|..+..+++|++|++++|.+++..+..|.
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 44444456666666666666666655554454444 55555555555544444455555555555555555544444445
Q ss_pred CCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEcc
Q 041016 420 QSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLS 499 (757)
Q Consensus 420 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~ 499 (757)
.+++|++|++++|.+++..|..|..+++|++|++++|.+++. .+..++.|+ .++++
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~----------------------~L~l~ 200 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLF----------------------HANVS 200 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCS----------------------EEECC
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhhhh----------------------hhhcc
Confidence 555555555555555555555555555555555555555432 122333444 44444
Q ss_pred CCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccC
Q 041016 500 ENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKI 579 (757)
Q Consensus 500 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 579 (757)
+|.+++ +...++|+.|++++|.+....+ .+ .++|++|++++|.+++ +..+..+++|++|++++|.+++..
T Consensus 201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 201 YNLLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp SSCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE
T ss_pred cCcccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC
Confidence 444433 2234567788888887764332 22 3578888888888875 356778888888888888888777
Q ss_pred CcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEe
Q 041016 580 PSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLN 659 (757)
Q Consensus 580 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 659 (757)
|..|.++++| +.|+|++|.+++ +|..+..+++|++|+
T Consensus 271 ~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 271 YHPFVKMQRL------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLD 307 (597)
T ss_dssp SGGGTTCSSC------------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred HHHhcCccCC------------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEE
Confidence 7777665544 788888888885 566777899999999
Q ss_pred CCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCC
Q 041016 660 LSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLC 739 (757)
Q Consensus 660 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc 739 (757)
|++|.++ .+|..+..+++|++|+|++|.+++.. +..+++|++|++++|++.+..+. ..+..+.... +.+++..|
T Consensus 308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~-~~~~~~~C 381 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPA-VDDADQHC 381 (597)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTT-BCCCCCCC
T ss_pred CCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhc-cccccccC
Confidence 9999999 57778899999999999999998763 66788999999999999986432 3456667777 88999999
Q ss_pred CCC
Q 041016 740 GMQ 742 (757)
Q Consensus 740 ~~~ 742 (757)
+.+
T Consensus 382 ~~~ 384 (597)
T 3oja_B 382 KID 384 (597)
T ss_dssp CTT
T ss_pred Ccc
Confidence 763
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.4e-32 Score=285.42 Aligned_cols=307 Identities=23% Similarity=0.348 Sum_probs=198.9
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL 185 (757)
Q Consensus 106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 185 (757)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++.. +.+.++++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 346678888888888886 454 37778888888888888874 343 78888888888888887753 357788888
Q ss_pred CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN 265 (757)
Q Consensus 186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 265 (757)
++|++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 8888888887743 33 7778888888888886554433 37777788888888877764433 677777777777777
Q ss_pred CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016 266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL 345 (757)
Q Consensus 266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 345 (757)
.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.++ +. +.
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~------------------------~~-~~ 238 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT------------------------DL-SP 238 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC------------------------CC-GG
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC------------------------CC-cc
Confidence 7764432 6677777777777777764433 566667777777666665 22 22
Q ss_pred hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM 425 (757)
Q Consensus 346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 425 (757)
+..+++|++|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|+
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI-------------------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred -hhcCCCCCEEECCCCccCCC-------------------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 55666666666666666532 1233344555555555555433 2345555566
Q ss_pred EEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccc
Q 041016 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFS 482 (757)
Q Consensus 426 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 482 (757)
+|++++|.+++..+..+..+++|++|++++|.+++..| +..+++|++|++++|.++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 66666666555555556666666666666666554444 555566666666666553
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.2e-33 Score=295.14 Aligned_cols=274 Identities=21% Similarity=0.272 Sum_probs=241.5
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCC----CCCCCCcccceeeeCCC------CCcccEEEEEcCCCCC
Q 041016 24 CCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETW----NSSSDCCRWEMVRCRSR------GPSQEVTGLDLNNLFP 93 (757)
Q Consensus 24 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~~------~~~~~v~~l~L~~~~~ 93 (757)
.+..+|+.||++||+.+..| + .+...+| ....++|.|.|+.|... ....+|+.++|++.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~---~------~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-- 91 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNAD---R------NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-- 91 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHC---C------TTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS--
T ss_pred ccCchHHHHHHHHHHhccCC---c------hhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC--
Confidence 46678999999999998632 3 2334567 34568999999999521 12468999999986
Q ss_pred CCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCC
Q 041016 94 LDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEG 173 (757)
Q Consensus 94 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 173 (757)
.+. .+++.++++++|++|+|++|.++ .+| ..++++++|++|+|++|.++ .+|..++++++|++|++++|.+.+
T Consensus 92 ---~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~ 164 (328)
T 4fcg_A 92 ---PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164 (328)
T ss_dssp ---CCS-SCCSCGGGGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC
T ss_pred ---Cch-hcChhhhhCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc
Confidence 444 67888999999999999999998 888 78999999999999999999 889999999999999999998888
Q ss_pred cccccccC---------CCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc
Q 041016 174 KLSSRVAG---------LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244 (757)
Q Consensus 174 ~~~~~~~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (757)
.+|..+.. +++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..+..+++|++|++++|.+.
T Consensus 165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp CCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTC
T ss_pred ccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcch
Confidence 88877654 999999999999998 788899999999999999999994 6667999999999999999999
Q ss_pred ccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcC
Q 041016 245 GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKW 317 (757)
Q Consensus 245 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 317 (757)
+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.+++..+.+..
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877653
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.3e-31 Score=283.55 Aligned_cols=307 Identities=23% Similarity=0.319 Sum_probs=238.0
Q ss_pred ccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCC
Q 041016 130 GFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNL 209 (757)
Q Consensus 130 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 209 (757)
.+..+++|++|+++++.+. .+| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ + ..+.++++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 3567889999999999988 445 48889999999999999886544 8889999999999998875 3 368888899
Q ss_pred CEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCC
Q 041016 210 HKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289 (757)
Q Consensus 210 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 289 (757)
++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999888875433 7788888888888886554433 47778888888888887775433 667777777777777
Q ss_pred ccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccc
Q 041016 290 VLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ 369 (757)
Q Consensus 290 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 369 (757)
.+.+..+ +..+++|+.+++++|.+. +..+ +..+++|++|++++|++++.
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~------------------------~~~~--~~~~~~L~~L~l~~n~l~~~--- 236 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQIT------------------------DITP--VANMTRLNSLKIGNNKITDL--- 236 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCC------------------------CCGG--GGGCTTCCEEECCSSCCCCC---
T ss_pred ccccccc--ccCCCccceeecccCCCC------------------------CCch--hhcCCcCCEEEccCCccCCC---
Confidence 7664332 556666666666666554 2222 66677777777777776632
Q ss_pred cccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCC
Q 041016 370 WLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLL 449 (757)
Q Consensus 370 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 449 (757)
+. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+
T Consensus 237 ---------------------~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 237 ---------------------SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp ---------------------GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ---------------------cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 22 56778999999999999864 4688899999999999999865 4688999999
Q ss_pred EEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccc
Q 041016 450 VLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFS 504 (757)
Q Consensus 450 ~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~ 504 (757)
.|++++|.+++..+ .+..+++|++|++++|++++..|......++.|++++|.++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 99999999998777 68899999999999999999888444556999999999875
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.4e-30 Score=270.40 Aligned_cols=196 Identities=23% Similarity=0.303 Sum_probs=82.3
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL 190 (757)
Q Consensus 111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 190 (757)
.+++|++++|.+++ ++...|+++++|++|++++|.+++..|..|+++++|++|++++|.++.. |..+. ++|++|++
T Consensus 53 ~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhhc--ccccEEEC
Confidence 44455555555442 2223444455555555555555444444444555555555555444422 22211 34444444
Q ss_pred cCccCCccCchhccCCCCCCEEEcccccccc--ccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC
Q 041016 191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG--GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT 268 (757)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 268 (757)
++|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++. +|..+. ++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence 4444444444444444444444444444421 333344444444444444444432 222221 33444444444444
Q ss_pred CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCC
Q 041016 269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN 313 (757)
Q Consensus 269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 313 (757)
+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 333333444444444444444433333333333333333333333
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.4e-34 Score=312.92 Aligned_cols=398 Identities=20% Similarity=0.206 Sum_probs=184.1
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCC----CcCccccCCCCCCEEEccCCcCCCcccccc-cCCC-
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNG----SIPSQLFNLRYLEFLDLSANAIEGKLSSRV-AGLK- 183 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~- 183 (757)
++|++||+++|.++.......+..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3456666666666533221225556666666666666653 234455555666666666665544322222 2233
Q ss_pred ---CCCEEEccCccCCc----cCchhccCCCCCCEEEccccccccccCcccc-----CCCCCCEEEccCCcCcccCcccc
Q 041016 184 ---NLKQLILDDNLIQG----QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL-----QLRKLETLDLQRNSLSGEIPEDI 251 (757)
Q Consensus 184 ---~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~l 251 (757)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 45555555555542 2344455555555555555554432222211 123344444444444332110
Q ss_pred cCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhc-----cCCCcEEEccCCCCcCCCcccccCC
Q 041016 252 GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-----LQGMKSLYLGGNKLKWNDNVSIVPK 326 (757)
Q Consensus 252 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~~~~~~~ 326 (757)
.++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.++....
T Consensus 161 ------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------ 216 (461)
T 1z7x_W 161 ------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC------ 216 (461)
T ss_dssp ------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH------
T ss_pred ------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH------
Confidence 12333344455555555555444332222221 3344444444444431100
Q ss_pred cccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCc
Q 041016 327 CMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLS 406 (757)
Q Consensus 327 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~ 406 (757)
..++..+..+++|++|++++|.+.+.....+.. .....+++|++|+++
T Consensus 217 --------------~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~------------------~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 217 --------------RDLCGIVASKASLRELALGSNKLGDVGMAELCP------------------GLLHPSSRLRTLWIW 264 (461)
T ss_dssp --------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH------------------HHTSTTCCCCEEECT
T ss_pred --------------HHHHHHHHhCCCccEEeccCCcCChHHHHHHHH------------------HHhcCCCCceEEECc
Confidence 013444555555555555555554321111000 000122344444444
Q ss_pred Ccccccc----CCcccCCCCCccEEEccCCcccccChHhhhcc-----CCCCEEEccCCccccc----CC-CCCCCCccc
Q 041016 407 RNNFSGE----LPETIGQSTSVMVLMLSSNNFSGHVPKSISNI-----YRLLVLDLSNNSFSGE----FP-AFGSDSLVG 472 (757)
Q Consensus 407 ~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~ls~n~l~~~----~~-~~~~~~~L~ 472 (757)
+|.+++. ++..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++. ++ .+..+++|+
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 344 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc
Confidence 4444332 23333334455555555554443333333222 3555555555554432 11 222334444
Q ss_pred EEECcCCccccCCCchhhhcccEEEccCCccccccchhccC-CCCCCEEeCcCCcccC----cchhhccCCCCCCEEEcc
Q 041016 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSN-LSLLQHLDLHDNNLTG----EFPAFLSQLSSLQVLNLR 547 (757)
Q Consensus 473 ~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls 547 (757)
+|++++|++.+..+..+ ...+.. .++|++|++++|.+++ .+|..+..+++|++|+++
T Consensus 345 ~L~Ls~n~i~~~~~~~l------------------~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 345 ELQISNNRLEDAGVREL------------------CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp EEECCSSBCHHHHHHHH------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred EEEccCCccccccHHHH------------------HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 44444444332211111 112222 5678888888887775 567777777888888888
Q ss_pred CCcCccccCc----cc-CCCCCCCEEECcCCcccccCCccc
Q 041016 548 NTALEGSITD----GL-SNLTSLQILDLSNNNLLGKIPSSF 583 (757)
Q Consensus 548 ~n~l~~~~~~----~l-~~l~~L~~L~ls~n~l~~~~p~~~ 583 (757)
+|++++.... .+ ....+|+.|++.++.+....+..+
T Consensus 407 ~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l 447 (461)
T 1z7x_W 407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447 (461)
T ss_dssp SSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHH
Confidence 8877643221 12 124567888887777665444433
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.5e-30 Score=270.39 Aligned_cols=288 Identities=23% Similarity=0.274 Sum_probs=154.9
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL 190 (757)
Q Consensus 111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 190 (757)
++++++++++.++ .+| ..+ .++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVP-KEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCC-SCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccC-CCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666665 455 222 246666666666666555556666666666666666666555666666666666666
Q ss_pred cCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcc--cCcccccCCCCCCEEEccCCCCC
Q 041016 191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSG--EIPEDIGTLANITILALSNNALT 268 (757)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 268 (757)
++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++. ..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 666655 3343333 556666666665554444445555555555555555532 334444444 4555555555544
Q ss_pred CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016 269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS 348 (757)
Q Consensus 269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 348 (757)
+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++ +..+.++.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~------------------------~~~~~~~~ 238 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR------------------------MIENGSLS 238 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC------------------------CCCTTGGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC------------------------cCChhHhh
Confidence 3 222221 34444444444444333333333333333333333333 33333444
Q ss_pred CCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCC------CC
Q 041016 349 TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQ------ST 422 (757)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~------~~ 422 (757)
.+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+
T Consensus 239 ~l~~L~~L~L~~N~l~------------------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS------------------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp GCTTCCEEECCSSCCC------------------------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCCCCEEECCCCcCe------------------------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 4444444444444443 44555566667777777777776555555543 35
Q ss_pred CccEEEccCCccc--ccChHhhhccCCCCEEEccCCc
Q 041016 423 SVMVLMLSSNNFS--GHVPKSISNIYRLLVLDLSNNS 457 (757)
Q Consensus 423 ~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~ls~n~ 457 (757)
.|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6777888887766 5666777777788887777764
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1e-29 Score=266.78 Aligned_cols=266 Identities=21% Similarity=0.271 Sum_probs=153.7
Q ss_pred CCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEEC
Q 041016 398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDI 476 (757)
Q Consensus 398 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l 476 (757)
+++++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+| .+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 45666666666666555555666666666666666666555666666666666666666655 233 221 45555555
Q ss_pred cCCccccCCCchhhhc--ccEEEccCCcccc--ccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCc
Q 041016 477 SSNRFSGEVPSSFGVT--ILMLSLSENKFSG--QLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALE 552 (757)
Q Consensus 477 ~~n~l~~~~~~~~~~~--l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 552 (757)
++|++++..+..+... ++.|++++|.+.. ..+..+.++++|++|++++|.++. +|..+. ++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence 5555554443333322 4445555554432 445556666666666666666663 333332 56666666666666
Q ss_pred cccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccC
Q 041016 553 GSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYS 632 (757)
Q Consensus 553 ~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 632 (757)
+..+..+..+++|++|++++|.+++..+..+..+++| +
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------------~ 243 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------------------------------------------R 243 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC------------------------------------------C
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC------------------------------------------C
Confidence 6666666666666666666666665555455443333 6
Q ss_pred eEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC------CCCCEEeCCCCcCcc--CCCCCccCCCCCC
Q 041016 633 LMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL------EILETLDLSHNSLSG--KIPQTFAKLQQLT 704 (757)
Q Consensus 633 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~ 704 (757)
.|++++|+++ .+|..+..+++|++|++++|++++..+..|... +.|+.|++++|.+.. ..|..|..+..++
T Consensus 244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~ 322 (330)
T 1xku_A 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322 (330)
T ss_dssp EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred EEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccccee
Confidence 6666666666 556666666666666666666666555555432 556666666666643 4455666666666
Q ss_pred EEeCCCCc
Q 041016 705 SLYLSNNK 712 (757)
Q Consensus 705 ~L~ls~N~ 712 (757)
.+++++|+
T Consensus 323 ~l~L~~N~ 330 (330)
T 1xku_A 323 AVQLGNYK 330 (330)
T ss_dssp GEEC----
T ss_pred EEEecccC
Confidence 66666663
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.8e-33 Score=310.33 Aligned_cols=354 Identities=20% Similarity=0.219 Sum_probs=246.5
Q ss_pred ccEEEEEcCCCCCCCCcceeeccc-cccCCCCCCEEeCCCCCCCCC----CCccccCCCCCCCEEeCCCCcCCCCcCccc
Q 041016 81 QEVTGLDLNNLFPLDSIVTSVVLA-PIFRIRSLMTLDLSYNSMQGE----VPGTGFANLTRLTYLDLKDNNLNGSIPSQL 155 (757)
Q Consensus 81 ~~v~~l~L~~~~~~~~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 155 (757)
.+++.+++++. .+...... .+..+++|++|++++|.+++. ++ ..+..+++|++|+|++|.+++..+..+
T Consensus 3 ~~l~~L~Ls~~-----~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCE-----ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESC-----CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhhc-----ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 46889999876 34333333 367889999999999998742 44 568889999999999999986555444
Q ss_pred c-CCC----CCCEEEccCCcCCC----cccccccCCCCCCEEEccCccCCccCchhcc-----CCCCCCEEEcccccccc
Q 041016 156 F-NLR----YLEFLDLSANAIEG----KLSSRVAGLKNLKQLILDDNLIQGQIPAEIG-----NLTNLHKLSLRQNKFSG 221 (757)
Q Consensus 156 ~-~l~----~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~ 221 (757)
. .++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 3 455 79999999999985 4588899999999999999998765454433 36789999999999986
Q ss_pred cc----CccccCCCCCCEEEccCCcCcccCccccc-----CCCCCCEEEccCCCCCCc----cchhhhcCCCCCEEEccC
Q 041016 222 GI----PLSLLQLRKLETLDLQRNSLSGEIPEDIG-----TLANITILALSNNALTGA----IPQSIRNMTKLVTLRLDS 288 (757)
Q Consensus 222 ~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~ 288 (757)
.. +..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 43 56677789999999999998765444443 367899999999998864 567778889999999999
Q ss_pred Cccccccchh-----hhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcc
Q 041016 289 NVLSGEISTW-----LFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENEL 363 (757)
Q Consensus 289 n~l~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l 363 (757)
|.+++..... +..+++|++|++++|.++.... ..++..+..+++|++|++++|.+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC--------------------GDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--------------------HHHHHHHHHCTTCCEEECTTCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH--------------------HHHHHHHhhCCCcceEECCCCCC
Confidence 9887543222 2246778888888877662111 01455666677778888877777
Q ss_pred cCcccccccCc------cccEEEcCCCcCCCC----CCCCccCCCCCCEEeCcCccccccCCcccCC-----CCCccEEE
Q 041016 364 EGTYPQWLSEL------NLGTVILSDNMLTGS----LPPPLFESRNLSVLVLSRNNFSGELPETIGQ-----STSVMVLM 428 (757)
Q Consensus 364 ~~~~~~~~~~~------~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~ 428 (757)
.+..+..+... .|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 65443333221 255555555555433 2333445566666666666665443332221 45666666
Q ss_pred ccCCcccc----cChHhhhccCCCCEEEccCCcccc
Q 041016 429 LSSNNFSG----HVPKSISNIYRLLVLDLSNNSFSG 460 (757)
Q Consensus 429 L~~n~l~~----~~~~~l~~l~~L~~L~ls~n~l~~ 460 (757)
+++|.+++ .++..+..+++|++|++++|.+++
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 66666664 556666666666666666666653
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.8e-30 Score=268.22 Aligned_cols=265 Identities=23% Similarity=0.300 Sum_probs=175.7
Q ss_pred CCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEEC
Q 041016 398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDI 476 (757)
Q Consensus 398 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l 476 (757)
+++++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+| .+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 46666666666666655666666666667777666666666666666666666666666665 333 222 56666666
Q ss_pred cCCccccCCCchhhhc--ccEEEccCCccc--cccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCc
Q 041016 477 SSNRFSGEVPSSFGVT--ILMLSLSENKFS--GQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALE 552 (757)
Q Consensus 477 ~~n~l~~~~~~~~~~~--l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 552 (757)
++|++.+..+..+... ++.|++++|.++ +..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 6666655444433322 555666666554 2455666666 77888888887774 444333 67778888888877
Q ss_pred cccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccC
Q 041016 553 GSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYS 632 (757)
Q Consensus 553 ~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 632 (757)
+..+..+..+++|++|++++|++.+..+..+..+++| +
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------------------------~ 244 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL------------------------------------------R 244 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC------------------------------------------C
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC------------------------------------------C
Confidence 7777777777888888888887776666555554443 7
Q ss_pred eEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC------CCCCEEeCCCCcCc--cCCCCCccCCCCCC
Q 041016 633 LMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL------EILETLDLSHNSLS--GKIPQTFAKLQQLT 704 (757)
Q Consensus 633 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~ 704 (757)
.|++++|+++ .+|..+..+++|++|++++|++++..+..|... .+|+.|++++|.+. +..|..|..+++|+
T Consensus 245 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp EEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred EEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 7788888877 667777778888888888888877766666543 56778888888776 56667777788888
Q ss_pred EEeCCCCc
Q 041016 705 SLYLSNNK 712 (757)
Q Consensus 705 ~L~ls~N~ 712 (757)
.+++++|+
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 88887774
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.6e-31 Score=301.58 Aligned_cols=450 Identities=14% Similarity=0.066 Sum_probs=233.6
Q ss_pred cccCCCCCCCEEeCCCCcCC---CCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccC
Q 041016 129 TGFANLTRLTYLDLKDNNLN---GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGN 205 (757)
Q Consensus 129 ~~~~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 205 (757)
..+..+++|++|+++++... +.+|..++... ...++.....+++|++|+|++|.+++..+..+..
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 134 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV------------TPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK 134 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBC------------HHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccc------------hHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHH
Confidence 55667777888888775321 23332222100 0001111225556666666666555444444444
Q ss_pred -CC-CCCEEEcccccc-cc-ccCccccCCCCCCEEEccCCcCccc----CcccccCCCCCCEEEccCCCCC----Cccch
Q 041016 206 -LT-NLHKLSLRQNKF-SG-GIPLSLLQLRKLETLDLQRNSLSGE----IPEDIGTLANITILALSNNALT----GAIPQ 273 (757)
Q Consensus 206 -l~-~L~~L~L~~n~l-~~-~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~----~~~~~ 273 (757)
++ +|++|++++|.- .. .++....++++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++.
T Consensus 135 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 214 (592)
T 3ogk_B 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214 (592)
T ss_dssp HHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred hccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence 22 366666666651 11 1122223566677777776665544 2233455667777777777665 23344
Q ss_pred hhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCC
Q 041016 274 SIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTEL 353 (757)
Q Consensus 274 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L 353 (757)
.+.++++|++|++++|.+.+ ++..+..+++|++|+++........ +..+..+..+++|
T Consensus 215 ~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---------------------~~~~~~l~~~~~L 272 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---------------------PEKYMNLVFPRKL 272 (592)
T ss_dssp HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---------------------TTSSSCCCCCTTC
T ss_pred HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch---------------------HHHHHHhhccccc
Confidence 45567777777777777664 5566677777777777652211000 1222334555666
Q ss_pred CEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCC-cccCCCCCccEEEccCC
Q 041016 354 TFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELP-ETIGQSTSVMVLMLSSN 432 (757)
Q Consensus 354 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n 432 (757)
+.++++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|+++++
T Consensus 273 ~~L~l~~~~~~------------------------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~ 328 (592)
T 3ogk_B 273 CRLGLSYMGPN------------------------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328 (592)
T ss_dssp CEEEETTCCTT------------------------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cccCccccchh------------------------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc
Confidence 66666553211 222333344556666666655443222 23455666666666632
Q ss_pred cccccChHhhhccCCCCEEEccC-CcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhc
Q 041016 433 NFSGHVPKSISNIYRLLVLDLSN-NSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNL 511 (757)
Q Consensus 433 ~l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~ 511 (757)
...+.++..+..+++|++|++++ ... +.... ..+.+++. .++..+
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~----~~~~~---------~~~~~~~~---------------------~~~~l~ 374 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADE----QGMED---------EEGLVSQR---------------------GLIALA 374 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCS----STTSS---------TTCCCCHH---------------------HHHHHH
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccc----ccccc---------ccCccCHH---------------------HHHHHH
Confidence 22222333345566666666652 000 00000 00111100 111223
Q ss_pred cCCCCCCEEeCcCCcccCcchhhccC-CCCCCEEEcc----CCcCccc-----cCcccCCCCCCCEEECcCCc--ccccC
Q 041016 512 SNLSLLQHLDLHDNNLTGEFPAFLSQ-LSSLQVLNLR----NTALEGS-----ITDGLSNLTSLQILDLSNNN--LLGKI 579 (757)
Q Consensus 512 ~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l~~~-----~~~~l~~l~~L~~L~ls~n~--l~~~~ 579 (757)
..+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|++|++++|. +++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 44666666666666666555555544 6667777764 4455532 22334556777777776543 33322
Q ss_pred CcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCc-CCccccCCCCCCEE
Q 041016 580 PSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE-IPSSLGSLKGLKSL 658 (757)
Q Consensus 580 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~-~p~~l~~l~~L~~L 658 (757)
+..+.. .++.|+.|++++|++++. ++..+.++++|++|
T Consensus 455 ~~~~~~-----------------------------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 455 LSYIGQ-----------------------------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp HHHHHH-----------------------------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred HHHHHH-----------------------------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 222211 134457777777777653 34445677888888
Q ss_pred eCCCCCCCcc-CCcchhCCCCCCEEeCCCCcCccCCCCCc-cCCCCCCEEeCCCC
Q 041016 659 NLSYNQLQGN-IPSTFGNLEILETLDLSHNSLSGKIPQTF-AKLQQLTSLYLSNN 711 (757)
Q Consensus 659 ~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N 711 (757)
++++|.+++. ++..+..+++|++|++++|+++......+ ..++.+....+..+
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8888887654 33444667888888888888776533333 24566655555544
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.2e-29 Score=262.39 Aligned_cols=288 Identities=21% Similarity=0.208 Sum_probs=195.5
Q ss_pred CCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCE
Q 041016 60 WNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTY 139 (757)
Q Consensus 60 w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 139 (757)
|.....+|.|.|+ |+.. .. .+ ..+|..+. ++|++|++++|.+++ ++...|.++++|++
T Consensus 23 ~~~~~~~C~~~~~-c~~~--~~---------------~l-~~iP~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~ 80 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGS--SG---------------SL-NSIPSGLT--EAVKSLDLSNNRITY-ISNSDLQRCVNLQA 80 (353)
T ss_dssp ----CCEECTTSE-EECC--ST---------------TC-SSCCTTCC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred CCccCCCCCCCeE-eeCC--CC---------------Cc-cccccccc--ccCcEEECCCCcCcc-cCHHHhccCCCCCE
Confidence 4444577999987 7641 11 11 12333333 478899999998874 55467888999999
Q ss_pred EeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCc-hhccCCCCCCEEEcccc-
Q 041016 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIP-AEIGNLTNLHKLSLRQN- 217 (757)
Q Consensus 140 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n- 217 (757)
|++++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++..+ ..+.++++|++|++++|
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 9999998887777788888899999999888887777678888888888888888885433 36788888888888888
Q ss_pred ccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccch
Q 041016 218 KFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEIST 297 (757)
Q Consensus 218 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 297 (757)
.+....+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+.
T Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 46655567788888888888888888877777888888888888888887644334445577777777777777654433
Q ss_pred hhh---ccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCc
Q 041016 298 WLF---DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL 374 (757)
Q Consensus 298 ~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 374 (757)
.+. ....++.++++++.+. ++.+. .+|.++..+++|+.|++++|+++.
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~-------------------~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~--------- 291 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKIT-------------------DESLF-QVMKLLNQISGLLELEFSRNQLKS--------- 291 (353)
T ss_dssp ------CCCCCCEEEEESCBCC-------------------HHHHH-HHHHHHHTCTTCCEEECCSSCCCC---------
T ss_pred ccccccccchhhcccccccccc-------------------Ccchh-hhHHHHhcccCCCEEECCCCCCCc---------
Confidence 222 2333444444444332 11111 356667777777777777777762
Q ss_pred cccEEEcCCCcCCCCCCCC-ccCCCCCCEEeCcCcccccc
Q 041016 375 NLGTVILSDNMLTGSLPPP-LFESRNLSVLVLSRNNFSGE 413 (757)
Q Consensus 375 ~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~L~~n~l~~~ 413 (757)
+|.. +..+++|++|++++|.+.+.
T Consensus 292 ---------------i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 292 ---------------VPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ---------------CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ---------------cCHHHHhcCCCCCEEEeeCCCccCc
Confidence 2222 34556677777777766544
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.3e-29 Score=257.77 Aligned_cols=252 Identities=27% Similarity=0.324 Sum_probs=198.0
Q ss_pred cccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCc
Q 041016 67 CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN 146 (757)
Q Consensus 67 c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~ 146 (757)
|.|.+|.|+..+.+ .+|..+ .++|++|++++|.++ .+|...|+++++|++|++++|.
T Consensus 7 C~~~~l~c~~~~l~--------------------~ip~~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~ 63 (306)
T 2z66_A 7 CSGTEIRCNSKGLT--------------------SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG 63 (306)
T ss_dssp EETTEEECCSSCCS--------------------SCCSCC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred eCCCEEEcCCCCcc--------------------cCCCCC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCc
Confidence 89999999863211 122222 258899999999997 6775678999999999999999
Q ss_pred CCC--CcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCc-hhccCCCCCCEEEcccccccccc
Q 041016 147 LNG--SIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIP-AEIGNLTNLHKLSLRQNKFSGGI 223 (757)
Q Consensus 147 l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~ 223 (757)
++. ..|..+..+++|++|++++|.+.. ++..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus 64 l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 64 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred cCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 873 336777789999999999998874 56668889999999999998886554 57888899999999999888888
Q ss_pred CccccCCCCCCEEEccCCcCcc-cCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhcc
Q 041016 224 PLSLLQLRKLETLDLQRNSLSG-EIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDL 302 (757)
Q Consensus 224 ~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 302 (757)
+..+.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 8888888899999999888876 567788888888888888888887777888888888888888888887666677778
Q ss_pred CCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCC-CCCEEEccCCcccCc
Q 041016 303 QGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT-ELTFLDLSENELEGT 366 (757)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~ 366 (757)
++|++|++++|.++ +..|..+..++ +|++|++++|.+.+.
T Consensus 223 ~~L~~L~L~~N~l~------------------------~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 223 NSLQVLDYSLNHIM------------------------TSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCCEEECTTSCCC------------------------BCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ccCCEeECCCCCCc------------------------ccCHHHHHhhhccCCEEEccCCCeecc
Confidence 88888888888776 45555555553 667777777666654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1e-27 Score=248.64 Aligned_cols=248 Identities=26% Similarity=0.324 Sum_probs=172.9
Q ss_pred EEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCccccc--ChHhhhccCCCCEEEccC
Q 041016 378 TVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH--VPKSISNIYRLLVLDLSN 455 (757)
Q Consensus 378 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~ 455 (757)
.++.+++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3444444443 3444332 5778888888887755555567778888888888877632 355666667777776666
Q ss_pred CcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcch-hh
Q 041016 456 NSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AF 534 (757)
Q Consensus 456 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~ 534 (757)
|.+.. +|..+..+++|++|++++|++++..+ ..
T Consensus 88 n~i~~----------------------------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 121 (306)
T 2z66_A 88 NGVIT----------------------------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121 (306)
T ss_dssp CSEEE----------------------------------------------EEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred Ccccc----------------------------------------------ChhhcCCCCCCCEEECCCCcccccccchh
Confidence 65542 23345566777777777777765444 45
Q ss_pred ccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccc-cCCcccccccccccCCCCCCCCCcccCCccccceeE
Q 041016 535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG-KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI 613 (757)
Q Consensus 535 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 613 (757)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L------------------------ 177 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------------------ 177 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC------------------------
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC------------------------
Confidence 6677777777777777777677777777777777777777765 455555544433
Q ss_pred eeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCC
Q 041016 614 VNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI 693 (757)
Q Consensus 614 ~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 693 (757)
+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus 178 ------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 178 ------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp ------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred ------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 77777777777777777888888888888888888777777888888888888888888888
Q ss_pred CCCccCCC-CCCEEeCCCCcceec
Q 041016 694 PQTFAKLQ-QLTSLYLSNNKLSGR 716 (757)
Q Consensus 694 p~~l~~l~-~L~~L~ls~N~l~g~ 716 (757)
|..+..++ +|++|++++|++++.
T Consensus 240 ~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 240 KQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SSSCCCCCTTCCEEECTTCCEECS
T ss_pred HHHHHhhhccCCEEEccCCCeecc
Confidence 87787774 788888888888764
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2e-31 Score=303.78 Aligned_cols=237 Identities=16% Similarity=0.130 Sum_probs=148.4
Q ss_pred CCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCC---CCCCccccC---------
Q 041016 65 DCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQ---GEVPGTGFA--------- 132 (757)
Q Consensus 65 ~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~i~~~~~~--------- 132 (757)
-|++|.++.+.. . ..+.+... .....+..+.++++|++|+++++... +.+| ..++
T Consensus 40 vck~W~~~~~~~----~--~~l~~~~~------~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~~~~~~~l~~ 106 (592)
T 3ogk_B 40 VCRRWFKIDSET----R--EHVTMALC------YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP-ENWGGYVTPWVTE 106 (592)
T ss_dssp SCHHHHHHHHHH----C--CEEEESCG------GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC-TTSCCBCHHHHHH
T ss_pred HhHHHHHhhhcc----c--cEEEEeec------cccChHHHHHhCCCCeEEEecCCcchhhccccc-ccccccchHHHHH
Confidence 355899886532 1 12223321 22233445678899999999886431 2233 2222
Q ss_pred ---CCCCCCEEeCCCCcCCCCcCccccCC-C-CCCEEEccCCcC-CC-cccccccCCCCCCEEEccCccCCcc----Cch
Q 041016 133 ---NLTRLTYLDLKDNNLNGSIPSQLFNL-R-YLEFLDLSANAI-EG-KLSSRVAGLKNLKQLILDDNLIQGQ----IPA 201 (757)
Q Consensus 133 ---~l~~L~~L~Ls~n~l~~~~p~~l~~l-~-~L~~L~Ls~n~l-~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~p~ 201 (757)
.+++|++|+|++|.+++..+..+... + +|++|+|++|.- .. ..+....++++|++|+|++|.+++. ++.
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred HHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 67888888888888776666666553 3 488888887761 11 1122234678888888888877655 333
Q ss_pred hccCCCCCCEEEccccccc----cccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC---Cccchh
Q 041016 202 EIGNLTNLHKLSLRQNKFS----GGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT---GAIPQS 274 (757)
Q Consensus 202 ~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~ 274 (757)
.+..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 4556778888888888776 2334445667788888888877764 5566777788888887653322 233345
Q ss_pred hhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016 275 IRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 275 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 316 (757)
+..+++|+.++++++. .+.++..+..+++|++|++++|.++
T Consensus 266 l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred hhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCC
Confidence 5666777777777643 2345666666777777777777654
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.8e-27 Score=248.37 Aligned_cols=227 Identities=19% Similarity=0.265 Sum_probs=192.3
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ 187 (757)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 187 (757)
..+.+++|+|++|.++ .+| ..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 4578999999999998 788 66888999999999999999 88999999999999999999998 66888999999999
Q ss_pred EEccCccCCccCchhccC---------CCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCC
Q 041016 188 LILDDNLIQGQIPAEIGN---------LTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT 258 (757)
Q Consensus 188 L~L~~n~l~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 258 (757)
|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+.++++|++|++++|.+++ +|..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence 999998888888887654 888888888888888 777788888888888888888884 556788888888
Q ss_pred EEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCcc
Q 041016 259 ILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCS 338 (757)
Q Consensus 259 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~ 338 (757)
+|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~---------------------- 290 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL---------------------- 290 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC----------------------
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch----------------------
Confidence 8888888888888888888888888888888888888888888888888877777766
Q ss_pred CccCcchhccCCCCCCEEEccCCccc
Q 041016 339 VRGSIPLWLSTQTELTFLDLSENELE 364 (757)
Q Consensus 339 ~~~~~~~~l~~~~~L~~L~l~~n~l~ 364 (757)
+.+|.++..+++|+.+++..+.+.
T Consensus 291 --~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 291 --SRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp --CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred --hhccHHHhhccCceEEeCCHHHHH
Confidence 788888888888888888766554
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.1e-28 Score=256.99 Aligned_cols=289 Identities=18% Similarity=0.167 Sum_probs=210.6
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCC
Q 041016 107 FRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLK 186 (757)
Q Consensus 107 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 186 (757)
..++...+.+++++.++ .+| ..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP-~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIP-SGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCC-TTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcc-ccc-cccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34555667899999987 677 3333 5899999999999976666899999999999999999988888899999999
Q ss_pred EEEccCccCCccCchhccCCCCCCEEEccccccccccC-ccccCCCCCCEEEccCC-cCcccCcccccCCCCCCEEEccC
Q 041016 187 QLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP-LSLLQLRKLETLDLQRN-SLSGEIPEDIGTLANITILALSN 264 (757)
Q Consensus 187 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~ 264 (757)
+|++++|.+++..+..++++++|++|++++|.+++..+ ..+.++++|++|++++| .+++..+..+..+++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999986666668899999999999999885443 47888899999999988 46666677788888888888888
Q ss_pred CCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP 344 (757)
Q Consensus 265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 344 (757)
|.+.+..|..+.++++|++|++++|.++......+..+++|++|++++|.++......+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l--------------------- 242 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL--------------------- 242 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc---------------------
Confidence 88887778888888888888888888764444445557778888888777663211100
Q ss_pred hhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCc
Q 041016 345 LWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSV 424 (757)
Q Consensus 345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 424 (757)
......+.++.++++++.+.+.. +. .+|..+..+++|++|++++|+++...+..|..+++|
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~------------------l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 303 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDES------------------LF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL 303 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHH------------------HH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccccchhhccccccccccCcc------------------hh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCC
Confidence 01123445566666665554311 00 233445566778888888888774333335777788
Q ss_pred cEEEccCCcccccCh
Q 041016 425 MVLMLSSNNFSGHVP 439 (757)
Q Consensus 425 ~~L~L~~n~l~~~~~ 439 (757)
++|++++|.+.+..|
T Consensus 304 ~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 304 QKIWLHTNPWDCSCP 318 (353)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred CEEEeeCCCccCcCC
Confidence 888888887776544
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.6e-27 Score=242.79 Aligned_cols=207 Identities=28% Similarity=0.269 Sum_probs=133.3
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCc-CCCcccccccCCCCCCE
Q 041016 109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA-IEGKLSSRVAGLKNLKQ 187 (757)
Q Consensus 109 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 187 (757)
.++|++|++++|.+++ ++...|.++++|++|++++|.+++..|..|.++++|++|++++|. +....+..+.++++|++
T Consensus 31 ~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3567777777777663 333566677777777777777766556666777777777777775 65555666666667777
Q ss_pred EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016 188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL 267 (757)
Q Consensus 188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 267 (757)
|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 77777766666566666666666666666666655555566666666666666666655555566666666666666666
Q ss_pred CCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016 268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 316 (757)
++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 6555666666666666666666666554455555666666666665554
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.7e-26 Score=251.49 Aligned_cols=247 Identities=21% Similarity=0.243 Sum_probs=159.0
Q ss_pred CCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEcc
Q 041016 112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILD 191 (757)
Q Consensus 112 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 191 (757)
.+.++.++..++ .+| ..+. +++++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP-~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVP-QGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccC-CCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 455666666665 455 2222 567777777777776666667777777777777777776666667777777777777
Q ss_pred CccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCC-cCcccCcccccCCCCCCEEEccCCCCCCc
Q 041016 192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN-SLSGEIPEDIGTLANITILALSNNALTGA 270 (757)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 270 (757)
+|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++| .+....+..+..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 77776555556667777777777777776555556667777777777763 34433334566677777777777776643
Q ss_pred cchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCC
Q 041016 271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350 (757)
Q Consensus 271 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 350 (757)
| .+..+++|++|++++|.+++..+..+..+++|+.|++++|.++......+.....|++|++++|++++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 2 46666777777777777776666667777777777777776664444444444445555555555555555556666
Q ss_pred CCCCEEEccCCccc
Q 041016 351 TELTFLDLSENELE 364 (757)
Q Consensus 351 ~~L~~L~l~~n~l~ 364 (757)
++|+.|++++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 67777777766654
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5e-26 Score=248.41 Aligned_cols=244 Identities=25% Similarity=0.277 Sum_probs=138.4
Q ss_pred EEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcc
Q 041016 379 VILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSF 458 (757)
Q Consensus 379 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l 458 (757)
++..+..++ .+|..+. ++++.|+|++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 48 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 48 VICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 333333333 3444443 5677788888887777777777778888888888877777777777777777777777666
Q ss_pred cccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCC
Q 041016 459 SGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQL 538 (757)
Q Consensus 459 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 538 (757)
+...+ ..|..+++|++|++++|.+.+..+..|..+
T Consensus 125 ~~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 125 TTIPN---------------------------------------------GAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp SSCCT---------------------------------------------TTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred CeeCH---------------------------------------------hHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 53332 233344444444444444444334444444
Q ss_pred CCCCEEEccCCcCccc-cCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeec
Q 041016 539 SSLQVLNLRNTALEGS-ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWK 617 (757)
Q Consensus 539 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 617 (757)
++|++|++++|...+. .+..|..+++|++|++++|.++. +|. +..
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~-------------------------------- 205 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTP-------------------------------- 205 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC-CTT--------------------------------
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc-cCC--------------------------------
Confidence 4555555544322222 22344555555555555555441 121 111
Q ss_pred cCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCc
Q 041016 618 NSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTF 697 (757)
Q Consensus 618 ~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 697 (757)
++.|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|
T Consensus 206 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 206 ----------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp ----------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ----------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 2233555555555555555566666666666666666666666666666666666666666665555556
Q ss_pred cCCCCCCEEeCCCCcce
Q 041016 698 AKLQQLTSLYLSNNKLS 714 (757)
Q Consensus 698 ~~l~~L~~L~ls~N~l~ 714 (757)
..+++|++|++++|++.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 66666666666666653
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.7e-27 Score=238.56 Aligned_cols=239 Identities=24% Similarity=0.215 Sum_probs=141.3
Q ss_pred CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCcc-CCccCchhccCCCCCCEEE
Q 041016 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQIPAEIGNLTNLHKLS 213 (757)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 213 (757)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 566666666666665555556666666666666666666556666666666666666665 5544455666666666666
Q ss_pred ccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccc
Q 041016 214 LRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG 293 (757)
Q Consensus 214 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 293 (757)
+++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666665555566666666666666666665555556666666666666666665444456666666666666666666
Q ss_pred ccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccC
Q 041016 294 EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSE 373 (757)
Q Consensus 294 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 373 (757)
..+..+..+++|++|++++|.++......+.....|++|++++|.+....+.. .-...++.+..+.+.+....|..+.+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 55666666666666666666666555545555566666666666655332210 00011222334455555555555544
Q ss_pred c
Q 041016 374 L 374 (757)
Q Consensus 374 ~ 374 (757)
.
T Consensus 271 ~ 271 (285)
T 1ozn_A 271 R 271 (285)
T ss_dssp C
T ss_pred c
Confidence 3
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.2e-26 Score=249.97 Aligned_cols=229 Identities=22% Similarity=0.190 Sum_probs=194.6
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
+++++|+|++|.+++..+ ..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 578899999999886555 7888999999999999999887788888999999999999999888778888899999999
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccc-cccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNK-FSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT 268 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 268 (757)
+++|.++...+..|.++++|++|++++|. +....+..|.++++|++|++++|.+++. | .+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 99999887777788899999999998854 4434445688889999999999998754 3 5788889999999999998
Q ss_pred CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCcc
Q 041016 269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG 341 (757)
Q Consensus 269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~ 341 (757)
+..|..|.++++|++|++++|.+++..+..+..+++|+.|++++|+++......+.....|++|++++|.+..
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 8888889999999999999999988888888889999999999999988887777888889999999887653
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=245.87 Aligned_cols=228 Identities=23% Similarity=0.225 Sum_probs=160.6
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
+++++|+|++|.+++..+ ..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|.++++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 567778888877764443 6677777788888887777766667777777777777777777766666777777777777
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccc-cccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNK-FSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT 268 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 268 (757)
+++|.++...+..|.++++|++|++++|. +....+..|.++++|++|++++|.++. +| .+..+++|++|++++|.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccC
Confidence 77777776666677777777777777743 333333456777777777777777763 33 4666777777777777777
Q ss_pred CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016 269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS 348 (757)
Q Consensus 269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 348 (757)
+..|..|.++++|++|++++|.+++..+..+..+++|++|++++|+++ +..+..+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------~~~~~~~~ 276 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT------------------------LLPHDLFT 276 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC------------------------CCCTTTTS
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC------------------------ccChhHhc
Confidence 666667777777777777777776666666666666666666666665 45555666
Q ss_pred CCCCCCEEEccCCccc
Q 041016 349 TQTELTFLDLSENELE 364 (757)
Q Consensus 349 ~~~~L~~L~l~~n~l~ 364 (757)
.+++|+.|++++|.+.
T Consensus 277 ~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCTTCCEEECCSSCEE
T ss_pred cccCCCEEEcCCCCcc
Confidence 7777777777777765
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3e-26 Score=257.15 Aligned_cols=298 Identities=24% Similarity=0.286 Sum_probs=177.1
Q ss_pred CCCCCCCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCC
Q 041016 55 GGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANL 134 (757)
Q Consensus 55 ~~~~~w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 134 (757)
..+..|....+||.|+|..|..... ..+....+++|++++|.++ .+| ..+.
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~-------------------------~~c~~~~l~~L~ls~n~L~-~lp-~~l~-- 60 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKM-------------------------RACLNNGNAVLNVGESGLT-TLP-DCLP-- 60 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHH-------------------------HHHHHHCCCEEECCSSCCS-CCC-SCCC--
T ss_pred HHHHHHHhcCCcchhccccccCccc-------------------------ccccCCCCcEEEecCCCcC-ccC-hhhC--
Confidence 3456787777899998765432000 0001123566677777766 566 3333
Q ss_pred CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEc
Q 041016 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSL 214 (757)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 214 (757)
++|++|++++|.++ .+|. .+++|++|+|++|.++++. . .+++|++|++++|.+++ +|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCC-C---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCC-C---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 67777777777776 4454 4567777777777766432 2 55667777777776664 333 4566777777
Q ss_pred cccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccc
Q 041016 215 RQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294 (757)
Q Consensus 215 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 294 (757)
++|.+++ +|.. +++|++|++++|.+++ +|. .+.+|+.|++++|.+++ +| ..+++|+.|++++|.+++
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS- 195 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-
Confidence 7777663 4432 3667777777776664 232 23566667777776664 33 334666666666666653
Q ss_pred cchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCc
Q 041016 295 ISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL 374 (757)
Q Consensus 295 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 374 (757)
+|. ..++|+.|++++|.++. +|. .+++|+.|++++|++++ +| ..+
T Consensus 196 l~~---~~~~L~~L~L~~N~l~~-------------------------l~~---~~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 196 LPT---LPSELYKLWAYNNRLTS-------------------------LPA---LPSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSS-------------------------CCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred CCC---ccchhhEEECcCCcccc-------------------------cCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence 222 23556666666665552 221 12455555555555553 22 111
Q ss_pred c-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccC
Q 041016 375 N-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIY 446 (757)
Q Consensus 375 ~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 446 (757)
+ |+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 2 555555555554 3343 4567888888888887 5577777888888888888888877777776654
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.3e-28 Score=253.30 Aligned_cols=267 Identities=21% Similarity=0.206 Sum_probs=191.8
Q ss_pred CEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCc
Q 041016 401 SVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNR 480 (757)
Q Consensus 401 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~ 480 (757)
+..+++.+.+.......+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++|+
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence 344455555544433444445566666666666666666666666666666666666665443 5666666666666666
Q ss_pred cccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCccc-
Q 041016 481 FSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGL- 559 (757)
Q Consensus 481 l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l- 559 (757)
+++..+. ..++.|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+
T Consensus 92 l~~l~~~---~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 92 VQELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEEEEEC---TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred cccccCC---CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 6543322 3477777777777766544 35778899999999888777788888899999999999887777666
Q ss_pred CCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCC
Q 041016 560 SNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNN 639 (757)
Q Consensus 560 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n 639 (757)
..+++|++|++++|.+++..+.. . ++.|+.|++++|
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~~~--~------------------------------------------l~~L~~L~Ls~N 201 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKGQV--V------------------------------------------FAKLKTLDLSSN 201 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEECCC--C------------------------------------------CTTCCEEECCSS
T ss_pred hccCcCCEEECCCCcCccccccc--c------------------------------------------cccCCEEECCCC
Confidence 46888999999999887542111 1 445688999999
Q ss_pred CCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCc-cCCCCCccCCCCCCEEeCC-CCcceecC
Q 041016 640 QLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS-GKIPQTFAKLQQLTSLYLS-NNKLSGRI 717 (757)
Q Consensus 640 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~i 717 (757)
++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|++++++ .+.+.|..
T Consensus 202 ~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 202 KLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 9985 4555888999999999999998 46777888999999999999998 6777888889999999998 44677776
Q ss_pred CCC
Q 041016 718 PES 720 (757)
Q Consensus 718 P~~ 720 (757)
|..
T Consensus 280 ~~~ 282 (317)
T 3o53_A 280 EEE 282 (317)
T ss_dssp SCC
T ss_pred hhc
Confidence 654
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=8.2e-28 Score=249.68 Aligned_cols=245 Identities=22% Similarity=0.174 Sum_probs=153.7
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCC-CCcCcccc-------CCCCCCEEEccCCcCCCcccccc-
Q 041016 109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLN-GSIPSQLF-------NLRYLEFLDLSANAIEGKLSSRV- 179 (757)
Q Consensus 109 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~- 179 (757)
.++|++|++++|.+ .+| ..+... |++|+|++|.++ ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p-~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADL-GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCC-HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccH-HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34566677777777 566 333332 777777777773 44555554 67777777777777776666665
Q ss_pred -cCCCCCCEEEccCccCCccCchhccCC-----CCCCEEEccccccccccCccccCCCCCCEEEccCCcCccc--Ccccc
Q 041016 180 -AGLKNLKQLILDDNLIQGQIPAEIGNL-----TNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGE--IPEDI 251 (757)
Q Consensus 180 -~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l 251 (757)
..+++|++|++++|.+++. |..++.+ ++|++|++++|++.+..|..++++++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 7777777777777777765 6666655 7777777777777766667777777777777777776554 22333
Q ss_pred --cCCCCCCEEEccCCCCCCc--cc-hhhhcCCCCCEEEccCCccccccc-hhhhccCCCcEEEccCCCCcCCCcccccC
Q 041016 252 --GTLANITILALSNNALTGA--IP-QSIRNMTKLVTLRLDSNVLSGEIS-TWLFDLQGMKSLYLGGNKLKWNDNVSIVP 325 (757)
Q Consensus 252 --~~l~~L~~L~L~~n~l~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 325 (757)
..+++|++|++++|.+++. ++ ..+.++++|++|++++|.+++..| ..+..+++|++|++++|.++.++...+
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--
Confidence 6677777777777777631 12 334566777777777777776553 334456677777777777663322111
Q ss_pred CcccceeecCCccCccCcchhccCCCCCCEEEccCCccc
Q 041016 326 KCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELE 364 (757)
Q Consensus 326 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 364 (757)
..|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 3445555555554433 33 455555555555555554
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.7e-25 Score=227.05 Aligned_cols=217 Identities=26% Similarity=0.308 Sum_probs=127.3
Q ss_pred CCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCC
Q 041016 64 SDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLK 143 (757)
Q Consensus 64 ~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls 143 (757)
.++|.|.|+.|.. ...++.+++++. .+.. +|..+. +++++|++++|.++ .++...|.++++|++|+++
T Consensus 2 ~~~C~~~~~~C~c---~~~~~~l~~~~~-----~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 69 (270)
T 2o6q_A 2 EALCKKDGGVCSC---NNNKNSVDCSSK-----KLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLN 69 (270)
T ss_dssp CCCBGGGTCSBEE---ETTTTEEECTTS-----CCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECC
T ss_pred CccCCCCCCCCEe---CCCCCEEEccCC-----CCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECC
Confidence 4789999999975 233455666654 2221 232222 45666666666665 3333556666666666666
Q ss_pred CCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEcccccccccc
Q 041016 144 DNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGI 223 (757)
Q Consensus 144 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 223 (757)
+|.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 66666444444556666666666666666555555666666666666666666555555666666666666666665444
Q ss_pred CccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccc
Q 041016 224 PLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292 (757)
Q Consensus 224 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 292 (757)
+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 444555666666666666665544445555556666666666555444444555555555555555543
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.6e-27 Score=244.81 Aligned_cols=251 Identities=22% Similarity=0.273 Sum_probs=167.1
Q ss_pred cccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCC-Cccccccc-------CCCCCCEEEccCccCCccCc
Q 041016 129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIE-GKLSSRVA-------GLKNLKQLILDDNLIQGQIP 200 (757)
Q Consensus 129 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p 200 (757)
..++..++|++|++++|.+ .+|..+... |++|++++|.+. ...+..+. ++++|++|++++|.+++.+|
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3456678899999999998 677776654 888888888874 34444444 67888888888888887777
Q ss_pred hhc--cCCCCCCEEEccccccccccCccccCC-----CCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCc--c
Q 041016 201 AEI--GNLTNLHKLSLRQNKFSGGIPLSLLQL-----RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGA--I 271 (757)
Q Consensus 201 ~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~ 271 (757)
..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 765 7788888888888888766 6666665 7788888888888777767777788888888888776654 2
Q ss_pred chhh--hcCCCCCEEEccCCcccc--ccc-hhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc-h
Q 041016 272 PQSI--RNMTKLVTLRLDSNVLSG--EIS-TWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP-L 345 (757)
Q Consensus 272 ~~~l--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~ 345 (757)
+..+ .++++|++|++++|.+++ .++ ..+..+++|++|++++|.++ +..| .
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~ 247 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR------------------------DAAGAP 247 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC------------------------SSCCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC------------------------cccchh
Confidence 3333 667777777777777662 112 22345566666666666655 3332 2
Q ss_pred hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM 425 (757)
Q Consensus 346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 425 (757)
.+..+++|++|++++|+++ .+ |..+. ++|++|++++|++++. |. +..+++|+
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~i-----------------------p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~ 299 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QV-----------------------PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVG 299 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SC-----------------------CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEE
T ss_pred hhhhcCCCCEEECCCCccC-hh-----------------------hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCC
Confidence 3444566666666666665 33 33333 4566666666666544 33 55666666
Q ss_pred EEEccCCcccc
Q 041016 426 VLMLSSNNFSG 436 (757)
Q Consensus 426 ~L~L~~n~l~~ 436 (757)
+|++++|++++
T Consensus 300 ~L~L~~N~l~~ 310 (312)
T 1wwl_A 300 NLSLKGNPFLD 310 (312)
T ss_dssp EEECTTCTTTC
T ss_pred EEeccCCCCCC
Confidence 66666666653
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.5e-28 Score=278.23 Aligned_cols=287 Identities=17% Similarity=0.165 Sum_probs=145.7
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCC---CcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNG---SIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
+.++++.+.. ..|...+.++++|++|+++++.... ..|..++. .....++.....+++|++|+
T Consensus 46 ~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~------------~~~~~l~~l~~~~~~L~~L~ 111 (594)
T 2p1m_B 46 RKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGG------------YVYPWIEAMSSSYTWLEEIR 111 (594)
T ss_dssp CEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCC------------BCHHHHHHHHHHCTTCCEEE
T ss_pred eEEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccc------------hhhHHHHHHHHhCCCCCeEE
Confidence 3555554432 3343556777888888888875321 11111100 00000111123455566666
Q ss_pred ccCccCCccCchhcc-CCCCCCEEEcccc-ccccc-cCccccCCCCCCEEEccCCcCcccCccccc----CCCCCCEEEc
Q 041016 190 LDDNLIQGQIPAEIG-NLTNLHKLSLRQN-KFSGG-IPLSLLQLRKLETLDLQRNSLSGEIPEDIG----TLANITILAL 262 (757)
Q Consensus 190 L~~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l~~L~~L~L 262 (757)
+++|.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++
T Consensus 112 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l 191 (594)
T 2p1m_B 112 LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191 (594)
T ss_dssp EESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEEC
T ss_pred eeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEe
Confidence 666555544444443 4566666666666 33321 233333566666666666665544333332 4557777777
Q ss_pred cCCC--CCC-ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccC
Q 041016 263 SNNA--LTG-AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSV 339 (757)
Q Consensus 263 ~~n~--l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~ 339 (757)
++|. +.. .++..+..+++|++|++++|...+.++..+..+++|++|+++.+... +..+.+
T Consensus 192 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~ 254 (594)
T 2p1m_B 192 SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----------------VRPDVY 254 (594)
T ss_dssp TTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------CCHHHH
T ss_pred cccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----------------cchhhH
Confidence 7665 221 11222345677888887777333336666777777777776654321 111222
Q ss_pred ccCcchhccCCCCCCEEE-ccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccC-Ccc
Q 041016 340 RGSIPLWLSTQTELTFLD-LSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGEL-PET 417 (757)
Q Consensus 340 ~~~~~~~l~~~~~L~~L~-l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~ 417 (757)
.+ ++..+.++++|+.+. +..... + .++..+..+++|++|++++|.+++.. ...
T Consensus 255 ~~-l~~~l~~~~~L~~Ls~~~~~~~-~-----------------------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~ 309 (594)
T 2p1m_B 255 SG-LSVALSGCKELRCLSGFWDAVP-A-----------------------YLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309 (594)
T ss_dssp HH-HHHHHHTCTTCCEEECCBTCCG-G-----------------------GGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred HH-HHHHHhcCCCcccccCCcccch-h-----------------------hHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence 22 344567777777772 322111 0 11222224466677777666654332 222
Q ss_pred cCCCCCccEEEccCCccccc-ChHhhhccCCCCEEEccCC
Q 041016 418 IGQSTSVMVLMLSSNNFSGH-VPKSISNIYRLLVLDLSNN 456 (757)
Q Consensus 418 ~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ls~n 456 (757)
+..+++|++|++++| +.+. ++.....+++|++|+++++
T Consensus 310 ~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPS 348 (594)
T ss_dssp HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECS
T ss_pred HhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecC
Confidence 445677777777766 3322 2222334677777776543
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=5.5e-29 Score=283.72 Aligned_cols=237 Identities=15% Similarity=0.147 Sum_probs=123.7
Q ss_pred CCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCC---Cc-----------cc
Q 041016 65 DCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEV---PG-----------TG 130 (757)
Q Consensus 65 ~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i---~~-----------~~ 130 (757)
-|++|.++.. .....++++.... ......+.++++|++|+++++.....+ |. ..
T Consensus 33 vck~W~~~~~------~~~~~l~~~~~~~------~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l 100 (594)
T 2p1m_B 33 VCKSWYEIER------WCRRKVFIGNCYA------VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAM 100 (594)
T ss_dssp SCHHHHHHHH------HHCCEEEESSTTS------SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH
T ss_pred HHHHHHHhhh------hhceEEeeccccc------cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHH
Confidence 4567988832 2234556654311 111234668899999999987643221 10 11
Q ss_pred cCCCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCC-cCCCc-ccccccCCCCCCEEEccCccCCccCchhcc---
Q 041016 131 FANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSAN-AIEGK-LSSRVAGLKNLKQLILDDNLIQGQIPAEIG--- 204 (757)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--- 204 (757)
...+++|++|+|++|.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 23566777777777777665555554 5677777777776 33322 233334666777777777766544433332
Q ss_pred -CCCCCCEEEccccc--cccc-cCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCC-------CCCccch
Q 041016 205 -NLTNLHKLSLRQNK--FSGG-IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA-------LTGAIPQ 273 (757)
Q Consensus 205 -~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~ 273 (757)
.+++|++|++++|. +... ++..+.++++|++|++++|...+.++..+..+++|++|+++.+. +. .++.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHH
Confidence 45566666666665 1111 11112335666666666663222245555566666666644432 11 1233
Q ss_pred hhhcCCCCCEE-EccCCccccccchhhhccCCCcEEEccCCCC
Q 041016 274 SIRNMTKLVTL-RLDSNVLSGEISTWLFDLQGMKSLYLGGNKL 315 (757)
Q Consensus 274 ~l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 315 (757)
.+.++++|+.+ .+.+.. .+.++..+..+++|++|++++|.+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp HHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCC
T ss_pred HHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCC
Confidence 45555555555 222211 122333334455555555555553
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-26 Score=241.42 Aligned_cols=238 Identities=20% Similarity=0.160 Sum_probs=129.3
Q ss_pred CCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEE
Q 041016 158 LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLD 237 (757)
Q Consensus 158 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 237 (757)
+++|++|++++|.+++..+..|.++++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 3344444444444444444444444444444444444443322 445555555555555554221 225555555
Q ss_pred ccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhh-ccCCCcEEEccCCCCc
Q 041016 238 LQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLYLGGNKLK 316 (757)
Q Consensus 238 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~ 316 (757)
+++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 555555543322 244566666666666655555566666666666666666655444442 4566666666666654
Q ss_pred CCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccC
Q 041016 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFE 396 (757)
Q Consensus 317 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 396 (757)
.. +. ...+++|++|++++|++++. |..+..
T Consensus 183 ~~-------------------------~~-~~~l~~L~~L~Ls~N~l~~l------------------------~~~~~~ 212 (317)
T 3o53_A 183 DV-------------------------KG-QVVFAKLKTLDLSSNKLAFM------------------------GPEFQS 212 (317)
T ss_dssp EE-------------------------EC-CCCCTTCCEEECCSSCCCEE------------------------CGGGGG
T ss_pred cc-------------------------cc-ccccccCCEEECCCCcCCcc------------------------hhhhcc
Confidence 11 11 12245566666666665532 222344
Q ss_pred CCCCCEEeCcCccccccCCcccCCCCCccEEEccCCccc-ccChHhhhccCCCCEEEccCC
Q 041016 397 SRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFS-GHVPKSISNIYRLLVLDLSNN 456 (757)
Q Consensus 397 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~ls~n 456 (757)
+++|++|++++|.+++ +|..+..+++|+.|++++|.+. +.++..+..+++|+.++++++
T Consensus 213 l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 5566666666666663 4555666777777777777776 566677777777777777743
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.1e-24 Score=239.76 Aligned_cols=263 Identities=27% Similarity=0.325 Sum_probs=159.1
Q ss_pred CCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEcc
Q 041016 351 TELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLS 430 (757)
Q Consensus 351 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 430 (757)
.+++.|++++|.++ .+|..+. ..|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 35788888888887 4454333 23667777777666 3443 34666667776666653 333 45666666666
Q ss_pred CCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchh
Q 041016 431 SNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQN 510 (757)
Q Consensus 431 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~ 510 (757)
+|.+++..+ .+++|+.|++++|.+++ +|. .+++|++|++++|+++ +. |.
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~----------------------~l-~~- 158 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLA----------------------SL-PA- 158 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS----------------------CC-CC-
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCc-CCC--CCCCCCEEECcCCcCC----------------------Cc-CC-
Confidence 666664322 34566666666666553 221 1244555555555444 32 21
Q ss_pred ccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccc
Q 041016 511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMI 590 (757)
Q Consensus 511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~ 590 (757)
.+++|+.|++++|.+++ +| ..+++|++|++++|.+++ +|.. +++|+.|++++|.++. +|..
T Consensus 159 --~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~-------- 219 (622)
T 3g06_A 159 --LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-------- 219 (622)
T ss_dssp --CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC--------
T ss_pred --ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC--------
Confidence 23566677777777664 33 345667777777777664 3322 3567777777776652 2221
Q ss_pred cCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCC
Q 041016 591 DTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP 670 (757)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 670 (757)
+++|+.|++++|++++ +| ..+++|++|+|++|++++ +|
T Consensus 220 -------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp 257 (622)
T 3g06_A 220 -------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LP 257 (622)
T ss_dssp -------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC
T ss_pred -------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CC
Confidence 2334677777777774 44 345677777777777774 44
Q ss_pred cchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016 671 STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719 (757)
Q Consensus 671 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 719 (757)
. .+++|+.|+|++|.++ .+|..+..+++|+.|++++|+++|.+|.
T Consensus 258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 3 4567777777777777 5566777777777777777777776664
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=253.83 Aligned_cols=234 Identities=22% Similarity=0.197 Sum_probs=106.2
Q ss_pred CccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCc
Q 041016 423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENK 502 (757)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~ 502 (757)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+. ..++.|++++|.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCc
Confidence 44444444444444444444444444444444444443333 44444444444444444322111 123333333333
Q ss_pred cccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccC-CCCCCCEEECcCCcccccCCc
Q 041016 503 FSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLS-NLTSLQILDLSNNNLLGKIPS 581 (757)
Q Consensus 503 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~ls~n~l~~~~p~ 581 (757)
+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+.
T Consensus 111 l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~ 187 (487)
T 3oja_A 111 ISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187 (487)
T ss_dssp CCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC
T ss_pred CCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc
Confidence 3333322 234455555555555555555555555555555555555554444443 455555555555555433111
Q ss_pred ccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCC
Q 041016 582 SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS 661 (757)
Q Consensus 582 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 661 (757)
. . ++.|+.|+|++|.+++.. ..+..+++|+.|+|+
T Consensus 188 ~--~------------------------------------------l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 188 V--V------------------------------------------FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLR 222 (487)
T ss_dssp C--C------------------------------------------CTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECT
T ss_pred c--c------------------------------------------CCCCCEEECCCCCCCCCC-HhHcCCCCccEEEec
Confidence 0 0 223344555555555322 234455555555555
Q ss_pred CCCCCccCCcchhCCCCCCEEeCCCCcCc-cCCCCCccCCCCCCEEeCC
Q 041016 662 YNQLQGNIPSTFGNLEILETLDLSHNSLS-GKIPQTFAKLQQLTSLYLS 709 (757)
Q Consensus 662 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 709 (757)
+|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 223 ~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 223 NNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 555553 3344455555555555555554 3344444444444444443
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.7e-26 Score=248.62 Aligned_cols=235 Identities=25% Similarity=0.218 Sum_probs=183.4
Q ss_pred CCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECc
Q 041016 398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDIS 477 (757)
Q Consensus 398 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~ 477 (757)
++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 466666666666666666666666677777777776665554 6666677777777776664322 2667777777
Q ss_pred CCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhcc-CCCCCCEEEccCCcCccccC
Q 041016 478 SNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLS-QLSSLQVLNLRNTALEGSIT 556 (757)
Q Consensus 478 ~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~ 556 (757)
+|.+++..+..+ ..++.|++++|.+++..|..+.++++|++|++++|.+++..|..+. .+++|++|+|++|.+++..+
T Consensus 108 ~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 108 NNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 777766555433 4478888888888888888899999999999999999998888876 79999999999999997633
Q ss_pred cccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEEC
Q 041016 557 DGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDL 636 (757)
Q Consensus 557 ~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~L 636 (757)
+..+++|++|++++|.+++..| .+..++. |+.|+|
T Consensus 187 --~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~------------------------------------------L~~L~L 221 (487)
T 3oja_A 187 --QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG------------------------------------------VTWISL 221 (487)
T ss_dssp --CCCCTTCCEEECCSSCCCEECG-GGGGGTT------------------------------------------CSEEEC
T ss_pred --cccCCCCCEEECCCCCCCCCCH-hHcCCCC------------------------------------------ccEEEe
Confidence 4469999999999999987544 3655544 489999
Q ss_pred cCCCCCCcCCccccCCCCCCEEeCCCCCCC-ccCCcchhCCCCCCEEeCC
Q 041016 637 SNNQLSGEIPSSLGSLKGLKSLNLSYNQLQ-GNIPSTFGNLEILETLDLS 685 (757)
Q Consensus 637 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls 685 (757)
++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 222 s~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999995 7888999999999999999998 7778889999999888886
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9e-24 Score=214.35 Aligned_cols=205 Identities=27% Similarity=0.348 Sum_probs=176.5
Q ss_pred ccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCc
Q 041016 471 VGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA 550 (757)
Q Consensus 471 L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 550 (757)
.+.+++++++++. +|..+...++.|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEEccCCCCCc-cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 4456666666653 455555567788888888887777789999999999999999997777778999999999999999
Q ss_pred CccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccc
Q 041016 551 LEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAI 630 (757)
Q Consensus 551 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 630 (757)
+.+..+..|..+++|++|++++|.+++..+..|.++++|
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------------------------------------- 135 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL----------------------------------------- 135 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-----------------------------------------
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-----------------------------------------
Confidence 998778889999999999999999988777766665544
Q ss_pred cCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCC
Q 041016 631 YSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN 710 (757)
Q Consensus 631 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 710 (757)
+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 136 -~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 136 -TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp -CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 8999999999987777799999999999999999988888899999999999999999988888899999999999999
Q ss_pred CcceecCC
Q 041016 711 NKLSGRIP 718 (757)
Q Consensus 711 N~l~g~iP 718 (757)
|++...-+
T Consensus 215 N~~~c~c~ 222 (270)
T 2o6q_A 215 NPWDCTCN 222 (270)
T ss_dssp SCBCCSSS
T ss_pred CCeeCCCc
Confidence 99976544
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.7e-23 Score=213.35 Aligned_cols=225 Identities=22% Similarity=0.247 Sum_probs=147.1
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCc
Q 041016 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN 193 (757)
Q Consensus 114 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 193 (757)
..+.++..++ .+| ..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip-~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCC-SSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccC-CCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 4555555555 566 3332 56888888888888666667778888888888888877766667777777777777777
Q ss_pred cCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCccc-CcccccCCCCCCEEEccCCCCCCccc
Q 041016 194 LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGE-IPEDIGTLANITILALSNNALTGAIP 272 (757)
Q Consensus 194 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~ 272 (757)
.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 77766667777777777777777777765555677777777777777776653 46666666666666666666665555
Q ss_pred hhhhcCCCCC----EEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016 273 QSIRNMTKLV----TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS 348 (757)
Q Consensus 273 ~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 348 (757)
..+..+++|+ +|++++|.+++..+..+ ...+|+ +|++++|++++..+..+.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~------------------------~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLK------------------------ELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEE------------------------EEECCSSCCSCCCTTTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc-CCCccc------------------------EEECCCCceeecCHhHhc
Confidence 5555544444 55555555543322222 222344 444444444455555567
Q ss_pred CCCCCCEEEccCCcccCcc
Q 041016 349 TQTELTFLDLSENELEGTY 367 (757)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~~ 367 (757)
.+++|+.|++++|.+.+..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCCSCCEEECCSSCBCCCT
T ss_pred ccccccEEEccCCcccccC
Confidence 7788888888888777554
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=9.3e-24 Score=214.41 Aligned_cols=205 Identities=24% Similarity=0.244 Sum_probs=165.4
Q ss_pred hhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEe
Q 041016 442 ISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLD 521 (757)
Q Consensus 442 l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 521 (757)
...+++|+.|++++|.+. .++.+..+++|++|++++|.+++ . ..+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~----------------------~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHD----------------------I--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCC----------------------C--GGGTTCTTCCEEE
T ss_pred cccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCC----------------------c--hhhcCCCCCCEEE
Confidence 445666666666666654 34455556666666666555442 1 2567888999999
Q ss_pred CcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCc
Q 041016 522 LHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE 601 (757)
Q Consensus 522 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 601 (757)
+++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------ 159 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------ 159 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC------------
Confidence 99999988888788889999999999999988777788899999999999999887666666555444
Q ss_pred ccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCE
Q 041016 602 IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILET 681 (757)
Q Consensus 602 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 681 (757)
+.|++++|++++..+..|+.+++|++|++++|++++.+|..|..+++|+.
T Consensus 160 ------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 160 ------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp ------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence 88999999999888888899999999999999999998888999999999
Q ss_pred EeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCC
Q 041016 682 LDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720 (757)
Q Consensus 682 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 720 (757)
|++++|.+.+. ++.|++|+++.|+++|.||..
T Consensus 210 L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 210 IWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp EECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred EEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 99999998865 457899999999999999975
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3e-23 Score=211.44 Aligned_cols=205 Identities=25% Similarity=0.319 Sum_probs=183.5
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
++|++|++++|.+++ ++...|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 579999999999985 4436899999999999999999977777899999999999999999998889999999999999
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccccccc-cCccccCCCCCCEEEccCCcCcccCcccccCCCCCC----EEEccC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG-IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT----ILALSN 264 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~ 264 (757)
+++|.+.+..+..++++++|++|++++|.+.+. +|..+.++++|++|++++|.+++..+..+..+++|+ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999987777899999999999999999864 689999999999999999999988777887777776 899999
Q ss_pred CCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 316 (757)
|.+++..+..+. ..+|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 999965555444 458999999999999777777889999999999999887
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=5.5e-23 Score=206.12 Aligned_cols=158 Identities=25% Similarity=0.264 Sum_probs=81.5
Q ss_pred CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEcc
Q 041016 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLR 215 (757)
Q Consensus 136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 215 (757)
++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44555555555554444445555555555555555554444445555555555555555554444445555555555555
Q ss_pred ccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccc
Q 041016 216 QNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG 293 (757)
Q Consensus 216 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 293 (757)
+|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 555554444444555555555555555554444445555555555555555554444455555555555555555543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=8.8e-23 Score=208.77 Aligned_cols=203 Identities=26% Similarity=0.259 Sum_probs=171.1
Q ss_pred CCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEE
Q 041016 466 GSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLN 545 (757)
Q Consensus 466 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 545 (757)
..++++++++++++.++. +|..+...++.|++++|.+++..+..|.++++|++|++++|.+++..+. ..+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~-ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCc-CCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 344556666666666653 4444455678888888888888888999999999999999999865432 7899999999
Q ss_pred ccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccc
Q 041016 546 LRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS 625 (757)
Q Consensus 546 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 625 (757)
+++|++. .+|..+..+++|++|++++|++++..|..|.++++|
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L------------------------------------ 126 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL------------------------------------ 126 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC------------------------------------
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC------------------------------------
Confidence 9999998 678888999999999999999997777777766555
Q ss_pred ccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCE
Q 041016 626 KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTS 705 (757)
Q Consensus 626 ~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 705 (757)
+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|+.
T Consensus 127 ------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 127 ------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199 (290)
T ss_dssp ------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred ------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence 89999999999888888899999999999999999887788899999999999999999 56777888899999
Q ss_pred EeCCCCccee
Q 041016 706 LYLSNNKLSG 715 (757)
Q Consensus 706 L~ls~N~l~g 715 (757)
+++++|++..
T Consensus 200 l~L~~Np~~C 209 (290)
T 1p9a_G 200 AFLHGNPWLC 209 (290)
T ss_dssp EECCSCCBCC
T ss_pred EEeCCCCccC
Confidence 9999999865
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.9e-23 Score=212.06 Aligned_cols=208 Identities=24% Similarity=0.236 Sum_probs=109.1
Q ss_pred CCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016 132 ANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK 211 (757)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 211 (757)
..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..|+++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34455555555555544 222 344555555555555555432 24455555555555555555444444555555555
Q ss_pred EEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcc
Q 041016 212 LSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL 291 (757)
Q Consensus 212 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 291 (757)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555555544444455555555555555555544444455555566666666655555445555566666666666666
Q ss_pred ccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCC
Q 041016 292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350 (757)
Q Consensus 292 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 350 (757)
++..+..+..+++|++|++++|.+. ..++.++.+++..|.+.|.+|.+++.+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 6555555556666666666666544 011223344444444445555554443
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.6e-22 Score=206.90 Aligned_cols=204 Identities=23% Similarity=0.244 Sum_probs=178.0
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCC
Q 041016 105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN 184 (757)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 184 (757)
.+.+++++++++++++.++ .+| ..+. +++++|+|++|.+++..|..|.++++|++|++++|.+++..+. ..+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip-~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred cccccCCccEEECCCCCCC-cCC-CCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence 3667889999999999997 677 3333 7899999999999988888999999999999999999865443 78999
Q ss_pred CCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccC
Q 041016 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN 264 (757)
Q Consensus 185 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 264 (757)
|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999998 6788889999999999999999977778899999999999999999987777788999999999999
Q ss_pred CCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 316 (757)
|++++..+..|..+++|++|++++|.++ .+|..+....+|+.+++++|.+.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 9999766677888999999999999998 67777888889999999999876
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.6e-24 Score=227.91 Aligned_cols=236 Identities=18% Similarity=0.209 Sum_probs=172.9
Q ss_pred CCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCC--CCCCEEeCCCCCCCCCCCccccCCCCCCCEEe
Q 041016 64 SDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRI--RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLD 141 (757)
Q Consensus 64 ~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 141 (757)
.-|.+|.++.|++ ..++.+++++. .+. +..+..+ +.+++|++++|.+.+..+ . +.++++|++|+
T Consensus 34 ~vc~~W~~~~~~~----~~~~~l~l~~~-----~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~-~~~~~~L~~L~ 99 (336)
T 2ast_B 34 GVCKRWYRLASDE----SLWQTLDLTGK-----NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-E-HFSPFRVQHMD 99 (336)
T ss_dssp SSCHHHHHHHTCS----TTSSEEECTTC-----BCC---HHHHHHHHHTTCSEEECTTCEECSCCC-S-CCCCBCCCEEE
T ss_pred HHHHHHHHHhcCc----hhheeeccccc-----cCC---HHHHHhhhhccceEEEcCCccccccch-h-hccCCCCCEEE
Confidence 3566899998864 34667888765 222 2344555 788888888888876655 3 55788888888
Q ss_pred CCCCcCCCC-cCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCc-cCCcc-CchhccCCCCCCEEEcccc-
Q 041016 142 LKDNNLNGS-IPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN-LIQGQ-IPAEIGNLTNLHKLSLRQN- 217 (757)
Q Consensus 142 Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n- 217 (757)
+++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|++++|
T Consensus 100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 888888765 7777888888888888888888777777888888888888888 56652 5666777888888888888
Q ss_pred ccccc-cCccccCCC-CCCEEEccCC--cCc-ccCcccccCCCCCCEEEccCCC-CCCccchhhhcCCCCCEEEccCCc-
Q 041016 218 KFSGG-IPLSLLQLR-KLETLDLQRN--SLS-GEIPEDIGTLANITILALSNNA-LTGAIPQSIRNMTKLVTLRLDSNV- 290 (757)
Q Consensus 218 ~l~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~- 290 (757)
.+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+.++++|++|++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 77654 466677788 8888888888 444 3456666778888888888887 666667777788888888888874
Q ss_pred cccccchhhhccCCCcEEEccCC
Q 041016 291 LSGEISTWLFDLQGMKSLYLGGN 313 (757)
Q Consensus 291 l~~~~~~~l~~l~~L~~L~L~~n 313 (757)
+.......+..+++|++|++++|
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc
Confidence 33222235667777888877777
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=8.5e-24 Score=224.30 Aligned_cols=268 Identities=21% Similarity=0.196 Sum_probs=124.9
Q ss_pred EeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcC----ccccCCC-CCCEEEccCCcCCCcccccccCC-----CC
Q 041016 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIP----SQLFNLR-YLEFLDLSANAIEGKLSSRVAGL-----KN 184 (757)
Q Consensus 115 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~ 184 (757)
++++.|.++|.+| ..+...++|++|+|++|.+++..+ ..+.+++ +|++|+|++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4555566655554 444444446666666665554443 4444555 55555555555554444433332 44
Q ss_pred CCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCC-CCCCEEEccCCcCcccCcccc----cC-CCCCC
Q 041016 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL-RKLETLDLQRNSLSGEIPEDI----GT-LANIT 258 (757)
Q Consensus 185 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~ 258 (757)
|++|++++|.+++..+..+... +..+ ++|++|++++|.+++..+..+ .. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 4444444444443333322111 1122 444444444444443333222 12 13455
Q ss_pred EEEccCCCCCCcc----chhhhcCC-CCCEEEccCCccccccchhhh----cc-CCCcEEEccCCCCcCCCcccccCCcc
Q 041016 259 ILALSNNALTGAI----PQSIRNMT-KLVTLRLDSNVLSGEISTWLF----DL-QGMKSLYLGGNKLKWNDNVSIVPKCM 328 (757)
Q Consensus 259 ~L~L~~n~l~~~~----~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~~~~~~~~~~ 328 (757)
+|++++|.+++.. +..+...+ +|++|++++|.+++..+..+. .+ ++|++|++++|.++....
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-------- 213 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-------- 213 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--------
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH--------
Confidence 5555555444322 22233333 555555555555544443332 22 355555555555542111
Q ss_pred cceeecCCccCccCcchhccC-CCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcC
Q 041016 329 LTELSLRSCSVRGSIPLWLST-QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSR 407 (757)
Q Consensus 329 L~~L~L~~~~~~~~~~~~l~~-~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~ 407 (757)
..++..+.. .++|++|++++|.+++..+..+. ..+..+++|++|++++
T Consensus 214 ------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-------------------~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 214 ------------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK-------------------LLKDSLKHLQTVYLDY 262 (362)
T ss_dssp ------------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH-------------------HTTTTTTTCSEEEEEH
T ss_pred ------------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH-------------------HHHhcCCCccEEEecc
Confidence 012333333 23566666666655543332111 1223345566666666
Q ss_pred cccccc-------CCcccCCCCCccEEEccCCcccccChHhh
Q 041016 408 NNFSGE-------LPETIGQSTSVMVLMLSSNNFSGHVPKSI 442 (757)
Q Consensus 408 n~l~~~-------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 442 (757)
|.+.+. ++..+..+++|++|++++|.+.+..+..+
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 653322 22345667777788888887766544443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1e-23 Score=226.15 Aligned_cols=243 Identities=22% Similarity=0.311 Sum_probs=135.2
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCCc---cccCCCCCCCEEeCCCC---cCCCCcCccc-------cCCCCCCEEEccC
Q 041016 102 VLAPIFRIRSLMTLDLSYNSMQGEVPG---TGFANLTRLTYLDLKDN---NLNGSIPSQL-------FNLRYLEFLDLSA 168 (757)
Q Consensus 102 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~---~~~~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~ 168 (757)
+...+..+++|++|+|++|.+++..+. ..+..+++|++|+|++| .+++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 334455666777777777766543210 23556777777777764 3334444444 4666666666666
Q ss_pred CcCCC----cccccccCCCCCCEEEccCccCCccCchhcc----CC---------CCCCEEEccccccc-cccC---ccc
Q 041016 169 NAIEG----KLSSRVAGLKNLKQLILDDNLIQGQIPAEIG----NL---------TNLHKLSLRQNKFS-GGIP---LSL 227 (757)
Q Consensus 169 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~l 227 (757)
|.+.. .++..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|.++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66665 3455556666666666666666533332222 22 56666666666654 2223 244
Q ss_pred cCCCCCCEEEccCCcCcc-----cCcccccCCCCCCEEEccCCCCC----CccchhhhcCCCCCEEEccCCccccc----
Q 041016 228 LQLRKLETLDLQRNSLSG-----EIPEDIGTLANITILALSNNALT----GAIPQSIRNMTKLVTLRLDSNVLSGE---- 294 (757)
Q Consensus 228 ~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~---- 294 (757)
..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|++|++++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 455566666666665541 22224555555666666555553 34455555555555555555555543
Q ss_pred cchhhhc--cCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCcc----Ccchhc-cCCCCCCEEEccCCcccCcc
Q 041016 295 ISTWLFD--LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG----SIPLWL-STQTELTFLDLSENELEGTY 367 (757)
Q Consensus 295 ~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~l-~~~~~L~~L~l~~n~l~~~~ 367 (757)
++..+.. +++|++|++++|.++ + .+|..+ .++++|++|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~------------------------~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIE------------------------LDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCB------------------------HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCC------------------------HHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 2333322 455555555555444 4 356656 55788888888888887665
Q ss_pred c
Q 041016 368 P 368 (757)
Q Consensus 368 ~ 368 (757)
+
T Consensus 320 ~ 320 (386)
T 2ca6_A 320 D 320 (386)
T ss_dssp H
T ss_pred h
Confidence 3
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.2e-21 Score=196.24 Aligned_cols=180 Identities=27% Similarity=0.318 Sum_probs=137.1
Q ss_pred cEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCC
Q 041016 494 LMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNN 573 (757)
Q Consensus 494 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n 573 (757)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34555555554 2333332 46777888888777777777777788888888888887777777777888888888888
Q ss_pred cccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCC
Q 041016 574 NLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLK 653 (757)
Q Consensus 574 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~ 653 (757)
++++..+..|..+++| +.|+|++|++++..+..|..++
T Consensus 94 ~l~~~~~~~~~~l~~L------------------------------------------~~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 94 QLASLPLGVFDHLTQL------------------------------------------DKLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp CCCCCCTTTTTTCTTC------------------------------------------CEEECCSSCCCCCCTTTTTTCT
T ss_pred cccccChhHhcccCCC------------------------------------------CEEEcCCCcCCCcChhHhccCC
Confidence 8776655555544433 7788888888877677788888
Q ss_pred CCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016 654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP 718 (757)
Q Consensus 654 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 718 (757)
+|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 99999999999988777788889999999999999998888888889999999999999887643
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.7e-23 Score=220.39 Aligned_cols=254 Identities=22% Similarity=0.241 Sum_probs=182.7
Q ss_pred cceeeccccccCCCCCCEEeCCCCCCCCCCCc----cccCCCC-CCCEEeCCCCcCCCCcCccccCC-----CCCCEEEc
Q 041016 97 IVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPG----TGFANLT-RLTYLDLKDNNLNGSIPSQLFNL-----RYLEFLDL 166 (757)
Q Consensus 97 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L 166 (757)
.+.|.++..+...++|++|||++|.+++ ++. ..+.+++ +|++|+|++|.+++..+..+..+ ++|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 6777777777777789999999999974 443 5677888 99999999999998878777765 99999999
Q ss_pred cCCcCCCcccccc----cCC-CCCCEEEccCccCCccCchhc----cC-CCCCCEEEccccccccccC----ccccCCC-
Q 041016 167 SANAIEGKLSSRV----AGL-KNLKQLILDDNLIQGQIPAEI----GN-LTNLHKLSLRQNKFSGGIP----LSLLQLR- 231 (757)
Q Consensus 167 s~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~- 231 (757)
++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+..+ ..+..++
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 9999987776644 444 899999999999987766554 33 3689999999999885433 3445555
Q ss_pred CCCEEEccCCcCcccCcccc----cCC-CCCCEEEccCCCCCCc----cchhhhc-CCCCCEEEccCCccccccchh---
Q 041016 232 KLETLDLQRNSLSGEIPEDI----GTL-ANITILALSNNALTGA----IPQSIRN-MTKLVTLRLDSNVLSGEISTW--- 298 (757)
Q Consensus 232 ~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~~~--- 298 (757)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 88999999988877666444 344 5888888888887753 3445555 347888888888777544422
Q ss_pred -hhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCccc
Q 041016 299 -LFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYP 368 (757)
Q Consensus 299 -l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 368 (757)
+..+++|++|++++|.+..+....+ ..++..+..+++|+.||+++|++.+..+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~-----------------~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQC-----------------KALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHH-----------------HHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHhcCCCccEEEeccCCccccCHHHH-----------------HHHHHHhccCCceEEEecCCCcCCCcch
Confidence 3455667777777776442221110 1233445667777788888887765533
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6e-23 Score=215.89 Aligned_cols=248 Identities=19% Similarity=0.223 Sum_probs=188.9
Q ss_pred ccEEEccCCcccccChHhhhcc--CCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccC-CCchhhh--cccEEEc
Q 041016 424 VMVLMLSSNNFSGHVPKSISNI--YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE-VPSSFGV--TILMLSL 498 (757)
Q Consensus 424 L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~--~l~~L~l 498 (757)
++.++++++.+. +..+..+ ++++.+++++|.+.+..+.+..+++|++|++++|.+.+. ++..+.. .+++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 566666666654 4455555 677777777777777766666777788888887777654 4444433 3788888
Q ss_pred cCCccccccchhccCCCCCCEEeCcCC-cccCc-chhhccCCCCCCEEEccCC-cCccc-cCcccCCCC-CCCEEECcCC
Q 041016 499 SENKFSGQLPQNLSNLSLLQHLDLHDN-NLTGE-FPAFLSQLSSLQVLNLRNT-ALEGS-ITDGLSNLT-SLQILDLSNN 573 (757)
Q Consensus 499 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~L~~L~ls~n 573 (757)
++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 888888788888999999999999999 67753 6777888999999999999 88864 567788899 9999999999
Q ss_pred --ccc-ccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCC-CCCcCCccc
Q 041016 574 --NLL-GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQ-LSGEIPSSL 649 (757)
Q Consensus 574 --~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~-l~~~~p~~l 649 (757)
.++ +.+|..+.++ +.|+.|++++|. +++..+..+
T Consensus 206 ~~~~~~~~l~~~~~~~------------------------------------------~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRC------------------------------------------PNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp GGGSCHHHHHHHHHHC------------------------------------------TTCSEEECTTCTTCCGGGGGGG
T ss_pred cccCCHHHHHHHHhhC------------------------------------------CCCCEEeCCCCCcCCHHHHHHH
Confidence 444 3344444433 455999999999 787888899
Q ss_pred cCCCCCCEEeCCCCC-CCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCC-CCCEEeCCCCcceecCCCC
Q 041016 650 GSLKGLKSLNLSYNQ-LQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ-QLTSLYLSNNKLSGRIPES 720 (757)
Q Consensus 650 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~~ 720 (757)
..+++|++|++++|. ++......+.++++|++|++++| ++ .+.+..+. .|..|++++|++++..|..
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 999999999999995 33332236889999999999999 32 33455553 4888889999999998854
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.7e-22 Score=200.95 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=156.4
Q ss_pred CCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCc-ccCcchhhccCCCCCCEEEccC-CcCccccCcccCC
Q 041016 484 EVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN-LTGEFPAFLSQLSSLQVLNLRN-TALEGSITDGLSN 561 (757)
Q Consensus 484 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~ 561 (757)
.+|. +...++.|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..
T Consensus 25 ~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 25 RIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp SCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred ccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 4455 55568888888888887777788899999999999997 8766667888899999999998 8888777788888
Q ss_pred CCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCC-C
Q 041016 562 LTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNN-Q 640 (757)
Q Consensus 562 l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n-~ 640 (757)
+++|++|++++|++++ +|. |..+.++ ..++.|++++| +
T Consensus 104 l~~L~~L~l~~n~l~~-lp~-~~~l~~L---------------------------------------~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKM-FPD-LTKVYST---------------------------------------DIFFILEITDNPY 142 (239)
T ss_dssp CTTCCEEEEEEECCCS-CCC-CTTCCBC---------------------------------------CSEEEEEEESCTT
T ss_pred CCCCCEEeCCCCCCcc-ccc-ccccccc---------------------------------------ccccEEECCCCcc
Confidence 9999999999998875 554 5544443 11348899999 8
Q ss_pred CCCcCCccccCCCCCC-EEeCCCCCCCccCCcchhCCCCCCEEeCCCCc-CccCCCCCccCC-CCCCEEeCCCCcceecC
Q 041016 641 LSGEIPSSLGSLKGLK-SLNLSYNQLQGNIPSTFGNLEILETLDLSHNS-LSGKIPQTFAKL-QQLTSLYLSNNKLSGRI 717 (757)
Q Consensus 641 l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~ls~N~l~g~i 717 (757)
+++..+..|.++++|+ +|++++|+++...+..|.. ++|++|++++|+ +++..+..|..+ ++|++|++++|++++ +
T Consensus 143 l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l 220 (239)
T 2xwt_C 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L 220 (239)
T ss_dssp CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred hhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence 8877777788899999 9999999998555555665 889999999995 887777888888 899999999999874 5
Q ss_pred CCCCCCCCCC
Q 041016 718 PESPQMDRQI 727 (757)
Q Consensus 718 P~~~~~~~~~ 727 (757)
|.. .+..+.
T Consensus 221 ~~~-~~~~L~ 229 (239)
T 2xwt_C 221 PSK-GLEHLK 229 (239)
T ss_dssp CCT-TCTTCS
T ss_pred Chh-HhccCc
Confidence 544 344443
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.6e-23 Score=224.62 Aligned_cols=245 Identities=22% Similarity=0.278 Sum_probs=141.9
Q ss_pred CCcccCCCCCccEEEccCCcccccChHh----hhccCCCCEEEccCCc---ccccCC-C-------CCCCCcccEEECcC
Q 041016 414 LPETIGQSTSVMVLMLSSNNFSGHVPKS----ISNIYRLLVLDLSNNS---FSGEFP-A-------FGSDSLVGHVDISS 478 (757)
Q Consensus 414 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~ls~n~---l~~~~~-~-------~~~~~~L~~L~l~~ 478 (757)
++..+..+++|++|++++|.+++..+.. +..+++|++|++++|. +.+.+| . +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4445556677777777777776554433 4466777777777653 333333 2 24555555555555
Q ss_pred CccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhcc----CC---------CCCCEEE
Q 041016 479 NRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLS----QL---------SSLQVLN 545 (757)
Q Consensus 479 n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~----~l---------~~L~~L~ 545 (757)
|.+.+.... .++..+..+++|++|++++|.+++..+..+. .+ ++|++|+
T Consensus 104 n~l~~~~~~------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 104 NAFGPTAQE------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp CCCCTTTHH------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred CcCCHHHHH------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 555432111 2445566666666666666666543333222 22 6666666
Q ss_pred ccCCcCc-cccC---cccCCCCCCCEEECcCCcccc-----cCCcccccccccccCCCCCCCCCcccCCccccceeEeee
Q 041016 546 LRNTALE-GSIT---DGLSNLTSLQILDLSNNNLLG-----KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNW 616 (757)
Q Consensus 546 Ls~n~l~-~~~~---~~l~~l~~L~~L~ls~n~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 616 (757)
+++|+++ +.++ ..+..+++|++|++++|.++. ..|..+..
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~------------------------------- 214 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY------------------------------- 214 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG-------------------------------
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc-------------------------------
Confidence 6666665 2233 345566666777777666652 12212222
Q ss_pred ccCccccccccccccCeEECcCCCCC----CcCCccccCCCCCCEEeCCCCCCCcc----CCcchhC--CCCCCEEeCCC
Q 041016 617 KNSKRGLSSKSLAIYSLMDLSNNQLS----GEIPSSLGSLKGLKSLNLSYNQLQGN----IPSTFGN--LEILETLDLSH 686 (757)
Q Consensus 617 ~~~~~~~~~~~~~~l~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~ 686 (757)
++.|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. ++..+.. +++|++|+|++
T Consensus 215 -----------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 215 -----------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp -----------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred -----------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcC
Confidence 233466777777764 45566667777777777777777654 4455533 67777777777
Q ss_pred CcCcc----CCCCCc-cCCCCCCEEeCCCCcceecCC
Q 041016 687 NSLSG----KIPQTF-AKLQQLTSLYLSNNKLSGRIP 718 (757)
Q Consensus 687 N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~iP 718 (757)
|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 77776 355555 446777777777777765543
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=206.64 Aligned_cols=227 Identities=20% Similarity=0.208 Sum_probs=169.4
Q ss_pred CccEEEccCCcccccChH---hhhccCCCCEEEccCCcccccCC-CC--CCCCcccEEECcCCccccCCCchhhhcccEE
Q 041016 423 SVMVLMLSSNNFSGHVPK---SISNIYRLLVLDLSNNSFSGEFP-AF--GSDSLVGHVDISSNRFSGEVPSSFGVTILML 496 (757)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~ls~n~l~~~~~-~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 496 (757)
.++.+.+.++.+....-. .+..+++|++|++++|.+.+..| .+ ..+++|++|++++|++++..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-------- 136 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL-------- 136 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------
Confidence 456666666655422111 12345678888888888887777 44 77778887777777776543311
Q ss_pred EccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccc--c--CcccCCCCCCCEEECcC
Q 041016 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS--I--TDGLSNLTSLQILDLSN 572 (757)
Q Consensus 497 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~l~~L~~L~ls~ 572 (757)
....+..+++|++|++++|++.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++
T Consensus 137 ----------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 137 ----------AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp ----------HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred ----------HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 012345788999999999999888888899999999999999998652 2 23457889999999999
Q ss_pred CcccccCCcc----cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCcc
Q 041016 573 NNLLGKIPSS----FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSS 648 (757)
Q Consensus 573 n~l~~~~p~~----~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~ 648 (757)
|.++.. +.. +.+ ++.|+.|||++|++++..|..
T Consensus 207 N~l~~l-~~~~~~l~~~------------------------------------------l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 207 TGMETP-TGVCAALAAA------------------------------------------GVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp SCCCCH-HHHHHHHHHH------------------------------------------TCCCSSEECTTSCCCCCCCSC
T ss_pred CCCCch-HHHHHHHHhc------------------------------------------CCCCCEEECCCCCCCccchhh
Confidence 988622 211 222 345589999999999888888
Q ss_pred ccCC---CCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016 649 LGSL---KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715 (757)
Q Consensus 649 l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 715 (757)
+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++.
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8777 69999999999999 6677664 7999999999999975 43 6788999999999999874
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.8e-22 Score=195.86 Aligned_cols=196 Identities=16% Similarity=0.173 Sum_probs=151.0
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCc-CCCCcCccccCCCCCCEEEccC-CcCCCcccccccCCCCCCEE
Q 041016 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN-LNGSIPSQLFNLRYLEFLDLSA-NAIEGKLSSRVAGLKNLKQL 188 (757)
Q Consensus 111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L 188 (757)
+|++|++++|.++ .+|...|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 7889999999887 4554678889999999999986 7766566788888999999988 88887777788888888888
Q ss_pred EccCccCCccCchhccCCCCCC---EEEcccc-ccccccCccccCCCCCC-EEEccCCcCcccCcccccCCCCCCEEEcc
Q 041016 189 ILDDNLIQGQIPAEIGNLTNLH---KLSLRQN-KFSGGIPLSLLQLRKLE-TLDLQRNSLSGEIPEDIGTLANITILALS 263 (757)
Q Consensus 189 ~L~~n~l~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 263 (757)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|.++. +|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcC
Confidence 888888885 565 77788887 8888888 88766666788888888 88888888873 44333333788888888
Q ss_pred CCC-CCCccchhhhcC-CCCCEEEccCCccccccchhhhccCCCcEEEccCC
Q 041016 264 NNA-LTGAIPQSIRNM-TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN 313 (757)
Q Consensus 264 ~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 313 (757)
+|+ +++..+..|..+ ++|++|++++|.+++. |.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 884 776556677777 8888888888887743 332 5667777777654
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.2e-21 Score=197.65 Aligned_cols=194 Identities=25% Similarity=0.374 Sum_probs=153.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL 185 (757)
Q Consensus 106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 185 (757)
...+++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 345678888888888886 454 478888899999999988854 43 88888899999998888764 368888888
Q ss_pred CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN 265 (757)
Q Consensus 186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 265 (757)
++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 8999988888753 3 38888888888888888875443 7788888888888888875433 788888888888888
Q ss_pred CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016 266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 316 (757)
.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 8886543 7788888888888888876543 778888888888888876
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=7.2e-21 Score=196.57 Aligned_cols=208 Identities=23% Similarity=0.337 Sum_probs=165.4
Q ss_pred EeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCcc
Q 041016 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL 194 (757)
Q Consensus 115 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 194 (757)
+.+..+.+.+.+. +..+++|++|++++|.++ .+| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 24 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 24 IAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp HHTTCSSTTSEEC---HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred HHhCCCCcCceec---HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence 3455555554333 557889999999999998 455 68899999999999999987655 8999999999999999
Q ss_pred CCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchh
Q 041016 195 IQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQS 274 (757)
Q Consensus 195 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 274 (757)
+++. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 97 l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 97 LKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp CSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--
Confidence 8853 3688899999999999998854 3 38889999999999999886533 7888899999999998886433
Q ss_pred hhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCC
Q 041016 275 IRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELT 354 (757)
Q Consensus 275 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~ 354 (757)
+..+++|++|++++|.+++..+ +..+++|++|++++|.++ +.. .+..+++|+
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~------------------------~~~--~l~~l~~L~ 220 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS------------------------DVS--PLANTSNLF 220 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC------------------------BCG--GGTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC------------------------ccc--cccCCCCCC
Confidence 7888888888888888875443 677888888888887776 333 267888888
Q ss_pred EEEccCCcccC
Q 041016 355 FLDLSENELEG 365 (757)
Q Consensus 355 ~L~l~~n~l~~ 365 (757)
.|++++|++++
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 88888888875
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=204.61 Aligned_cols=228 Identities=18% Similarity=0.144 Sum_probs=164.2
Q ss_pred CCCCCCEEeCCCCCCCCC-CC-ccccCCCCCCCEEeCCCCcCCCCcCccc--cCCCCCCEEEccCCcCCCccc----ccc
Q 041016 108 RIRSLMTLDLSYNSMQGE-VP-GTGFANLTRLTYLDLKDNNLNGSIPSQL--FNLRYLEFLDLSANAIEGKLS----SRV 179 (757)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~-i~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~~----~~~ 179 (757)
+...++.+.+.++.++.. +. ...+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 334567777777766532 00 0112234668888888888888888777 788888888888888876444 344
Q ss_pred cCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccc--c--CccccCCCCCCEEEccCCcCcccCcc----cc
Q 041016 180 AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG--I--PLSLLQLRKLETLDLQRNSLSGEIPE----DI 251 (757)
Q Consensus 180 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l 251 (757)
..+++|++|++++|.+.+..+..|+.+++|++|++++|++.+. + +..+..+++|++|++++|.++.. +. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHH
Confidence 5788888888888888877778888888888888888887542 2 22346788888888888888632 22 24
Q ss_pred cCCCCCCEEEccCCCCCCccchhhhcC---CCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcc
Q 041016 252 GTLANITILALSNNALTGAIPQSIRNM---TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM 328 (757)
Q Consensus 252 ~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 328 (757)
..+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|+++.++. +...+.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~ 295 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPE 295 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch--hhhCCC
Confidence 677888888888888887777777666 58888888888887 5566553 788888888888875533 455677
Q ss_pred cceeecCCccCcc
Q 041016 329 LTELSLRSCSVRG 341 (757)
Q Consensus 329 L~~L~L~~~~~~~ 341 (757)
|++|++++|.++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 8888888887764
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.6e-21 Score=186.92 Aligned_cols=185 Identities=28% Similarity=0.310 Sum_probs=146.9
Q ss_pred CcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCC
Q 041016 66 CCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN 145 (757)
Q Consensus 66 ~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n 145 (757)
.|+|.+|.|...+.. .++.. -.++|++|++++|.++ .++...|+++++|++|++++|
T Consensus 6 ~C~~~~v~c~~~~l~--------------------~~p~~--~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n 62 (208)
T 2o6s_A 6 SCSGTTVECYSQGRT--------------------SVPTG--IPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGN 62 (208)
T ss_dssp EEETTEEECCSSCCS--------------------SCCSC--CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSS
T ss_pred EECCCEEEecCCCcc--------------------CCCCC--CCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCC
Confidence 389999999863211 11221 2358899999999998 455477889999999999999
Q ss_pred cCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCc
Q 041016 146 NLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPL 225 (757)
Q Consensus 146 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 225 (757)
.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+.
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 63 KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 99866666778899999999999999887777788899999999999998877777788888999999999988876666
Q ss_pred cccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCC
Q 041016 226 SLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTK 280 (757)
Q Consensus 226 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 280 (757)
.+..+++|++|++++|.+.+ .+++|++|+++.|.++|.+|..++.++.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 68888888899888887654 3557788888888888888887776654
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.9e-20 Score=205.86 Aligned_cols=209 Identities=26% Similarity=0.389 Sum_probs=165.2
Q ss_pred CCCCCCCCCc-----cccee-eeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCcccc
Q 041016 58 ETWNSSSDCC-----RWEMV-RCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGF 131 (757)
Q Consensus 58 ~~w~~~~~~c-----~w~gv-~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~ 131 (757)
.+|..+.++| .|.|+ .|.. .+++.+++++. .+.+ +|..+ +++|++|+|++|.++ .+|
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~----~~L~~L~Ls~n-----~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---- 96 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLI----NQFSELQLNRL-----NLSS-LPDNL--PPQITVLEITQNALI-SLP---- 96 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHH----TTCSEEECCSS-----CCSC-CCSCC--CTTCSEEECCSSCCS-CCC----
T ss_pred HHHhccCCccccccchhhhcccccc----CCccEEEeCCC-----CCCc-cCHhH--cCCCCEEECcCCCCc-ccc----
Confidence 3565555677 79999 7863 47888999886 5555 55555 378999999999998 677
Q ss_pred CCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016 132 ANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK 211 (757)
Q Consensus 132 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 211 (757)
..+++|++|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++
T Consensus 97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~ 164 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV 164 (571)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence 457899999999999986 777 665 89999999999987 444 68899999999999986 555 5788999
Q ss_pred EEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCC-------CEEEccCCCCCCccchhhhcCCCCCEE
Q 041016 212 LSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI-------TILALSNNALTGAIPQSIRNMTKLVTL 284 (757)
Q Consensus 212 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L 284 (757)
|++++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|
T Consensus 165 L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 165 LSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp EECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred EECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 9999999986 666 65 89999999999988 5665 544 67 89999999988 578878889999999
Q ss_pred EccCCccccccchhhhccCC
Q 041016 285 RLDSNVLSGEISTWLFDLQG 304 (757)
Q Consensus 285 ~L~~n~l~~~~~~~l~~l~~ 304 (757)
++++|.+++.+|..+..+..
T Consensus 236 ~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 236 ILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp ECCSSSCCHHHHHHHHHHHH
T ss_pred EeeCCcCCCcCHHHHHHhhc
Confidence 99999998888888776543
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.9e-19 Score=177.24 Aligned_cols=162 Identities=28% Similarity=0.262 Sum_probs=89.0
Q ss_pred CCCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCC
Q 041016 59 TWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLT 138 (757)
Q Consensus 59 ~w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 138 (757)
.|..+...|+|.+|.|+..+. ..+|..+ .++|++|+|++|.+++..| ..|..+++|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~l--------------------~~ip~~~--~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~ 67 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKRH--------------------ASVPAGI--PTNAQILYLHDNQITKLEP-GVFDSLINLK 67 (229)
T ss_dssp CCCCTTCEEETTEEECTTSCC--------------------SSCCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTCC
T ss_pred ccCCCCCEEeCCEeEccCCCc--------------------CccCCCC--CCCCCEEEcCCCccCccCH-HHhhCccCCc
Confidence 455567889999999986311 1122212 1556666666666664444 5566666666
Q ss_pred EEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccc
Q 041016 139 YLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNK 218 (757)
Q Consensus 139 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 218 (757)
+|+|++|.++...+..|..+++|++|+|++|++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus 68 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 68 ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred EEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence 6666666665444444555666666666666655554445555555555555555555 344445555555555555555
Q ss_pred cccccCccccCCCCCCEEEccCCcCc
Q 041016 219 FSGGIPLSLLQLRKLETLDLQRNSLS 244 (757)
Q Consensus 219 l~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (757)
+++..+..+..+++|++|++++|.+.
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 54333344444444444444444443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=176.49 Aligned_cols=181 Identities=23% Similarity=0.209 Sum_probs=157.2
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
+.++.+++.++ .+| .. -.++|++|++++|.+++..+..+.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p-~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVP-TG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCC-SC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCC-CC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 46777777776 566 32 346999999999999977777789999999999999999988888889999999999999
Q ss_pred ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccc
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP 272 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 272 (757)
|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 99997777778999999999999999997777778999999999999999997777778999999999999998764
Q ss_pred hhhhcCCCCCEEEccCCccccccchhhhccCC
Q 041016 273 QSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG 304 (757)
Q Consensus 273 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 304 (757)
.+++|+.|+++.|.++|.+|.+++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3568899999999999999988776654
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.8e-20 Score=196.09 Aligned_cols=223 Identities=17% Similarity=0.133 Sum_probs=136.1
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCc-cccCCCCCCE-EEccCCcCCCcccccccCCCCCCE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPS-QLFNLRYLEF-LDLSANAIEGKLSSRVAGLKNLKQ 187 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~ 187 (757)
+++++|+|++|+++ .+|..+|.++++|++|+|++|.+.+.+|. +|.+++++++ +.+++|+++.+.+..|.++++|++
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 56788888888886 56656778888888888888877655553 5667777664 555667777776777777777777
Q ss_pred EEccCccCCccCchhccCCCCCCEEEccc-cccccccCccccCCC-CCCEEEccCCcCcccCcccccCCCCCCEEEccC-
Q 041016 188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQ-NKFSGGIPLSLLQLR-KLETLDLQRNSLSGEIPEDIGTLANITILALSN- 264 (757)
Q Consensus 188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~- 264 (757)
|++++|.++...+..+....++..+++.+ +.+....+..|..+. .+++|++++|+++. ++.......+|+++++.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccC
Confidence 77777777765555565666666777654 345444444455443 46667777776663 333333445666666654
Q ss_pred CCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP 344 (757)
Q Consensus 265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 344 (757)
|.++...+..|+++++|++|++++|+++...+. .+.+|+.|.+.++ .--..+|
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~------------------------~~l~~lP 240 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARST------------------------YNLKKLP 240 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTC------------------------TTCCCCC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccC------------------------CCcCcCC
Confidence 344433334456666666666666666533222 2334444443332 2113455
Q ss_pred hhccCCCCCCEEEccCCc
Q 041016 345 LWLSTQTELTFLDLSENE 362 (757)
Q Consensus 345 ~~l~~~~~L~~L~l~~n~ 362 (757)
. +..+++|+.+++.++.
T Consensus 241 ~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 241 T-LEKLVALMEASLTYPS 257 (350)
T ss_dssp C-TTTCCSCCEEECSCHH
T ss_pred C-chhCcChhhCcCCCCc
Confidence 3 6778888888887654
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.7e-19 Score=190.13 Aligned_cols=238 Identities=19% Similarity=0.155 Sum_probs=165.9
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcc-cccccCCCCCCE-EEcc
Q 041016 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL-SSRVAGLKNLKQ-LILD 191 (757)
Q Consensus 114 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~-L~L~ 191 (757)
+++.++++++ .|| ..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+ +..|.++++++. +.++
T Consensus 13 ~v~C~~~~Lt-~iP-~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIP-SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCC-TTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccC-cCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4556666776 677 333 367899999999998554567889999999999999886644 456788888775 5666
Q ss_pred CccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccC-CcCcccCcccccCCC-CCCEEEccCCCCCC
Q 041016 192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQR-NSLSGEIPEDIGTLA-NITILALSNNALTG 269 (757)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~ 269 (757)
+|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7888877788888899999999999988866666666777788888865 456655455555554 57778888888774
Q ss_pred ccchhhhcCCCCCEEEccC-CccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016 270 AIPQSIRNMTKLVTLRLDS-NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS 348 (757)
Q Consensus 270 ~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 348 (757)
++.......+|+++++.+ |.++...+..|..+++|++|++++|+++ .+|. .
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-------------------------~lp~--~ 220 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-------------------------SLPS--Y 220 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-------------------------CCCS--S
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-------------------------ccCh--h
Confidence 444444456677777765 4444333345667777777777777766 3333 2
Q ss_pred CCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCC
Q 041016 349 TQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDN 384 (757)
Q Consensus 349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n 384 (757)
.+.+|+.|.+.++.--..+|. +..+. |+.+++.++
T Consensus 221 ~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 221 GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 355677777766655556664 55665 999998765
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.7e-19 Score=198.13 Aligned_cols=181 Identities=27% Similarity=0.415 Sum_probs=106.2
Q ss_pred CCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCC
Q 041016 447 RLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDN 525 (757)
Q Consensus 447 ~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 525 (757)
+++.|++++|.+++ +| .+ .++|++|++++|+++ . +| ..+++|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~----------------------ip---~~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-S----------------------LP---ELPASLEYLDACDN 110 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-C----------------------CC---CCCTTCCEEECCSS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-c----------------------cc---cccCCCCEEEccCC
Confidence 77788887777765 44 23 255666666666655 2 23 23456666666666
Q ss_pred cccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCC
Q 041016 526 NLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSF 605 (757)
Q Consensus 526 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 605 (757)
.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .
T Consensus 111 ~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~-------------------- 158 (571)
T 3cvr_A 111 RLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L-------------------- 158 (571)
T ss_dssp CCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C--------------------
T ss_pred CCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c--------------------
Confidence 6664 444 433 66666666666665 343 45666666666666654 332 1
Q ss_pred ccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCC------
Q 041016 606 PVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEIL------ 679 (757)
Q Consensus 606 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L------ 679 (757)
++.|+.|+|++|++++ +|. |. ++|++|+|++|+|+ .+|. |.. +|
T Consensus 159 ----------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~ 208 (571)
T 3cvr_A 159 ----------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEET 208 (571)
T ss_dssp ----------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------C
T ss_pred ----------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccccc
Confidence 2334666666666664 444 44 66666777777666 4444 443 55
Q ss_pred -CEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016 680 -ETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719 (757)
Q Consensus 680 -~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 719 (757)
+.|+|++|.|+ .+|..+..+++|++|++++|+++|.+|.
T Consensus 209 L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 209 EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred ceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 66777777766 3555555667777777777777666653
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=5.3e-19 Score=172.78 Aligned_cols=156 Identities=22% Similarity=0.297 Sum_probs=127.3
Q ss_pred CEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEECcCCcccccCCcccccccccccCCCCC
Q 041016 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT-DGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSIL 596 (757)
Q Consensus 518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~ 596 (757)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------- 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------- 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-------
Confidence 46777777776 3554442 456788888888876644 457788888888888888887776666665544
Q ss_pred CCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC
Q 041016 597 PTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL 676 (757)
Q Consensus 597 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 676 (757)
+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+
T Consensus 84 -----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 128 (220)
T 2v70_A 84 -----------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128 (220)
T ss_dssp -----------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred -----------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence 788888888887778889999999999999999998889999999
Q ss_pred CCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016 677 EILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP 718 (757)
Q Consensus 677 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 718 (757)
++|++|+|++|++++..|..|..+++|++|++++|++.+..+
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999999999999889999999999999999999987665
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=8e-19 Score=171.50 Aligned_cols=153 Identities=24% Similarity=0.328 Sum_probs=116.2
Q ss_pred CEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCC
Q 041016 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILP 597 (757)
Q Consensus 518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~ 597 (757)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC--------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC--------
Confidence 45666676666 3444333 567777777777776666677777777777777777777667666655444
Q ss_pred CCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCC
Q 041016 598 TLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLE 677 (757)
Q Consensus 598 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 677 (757)
+.|+|++|+++...+..|.++++|++|+|++|++++..|..|..++
T Consensus 83 ----------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 83 ----------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH 128 (220)
T ss_dssp ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ----------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC
Confidence 7778888888766666678888888888888888888888888888
Q ss_pred CCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016 678 ILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715 (757)
Q Consensus 678 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 715 (757)
+|++|+|++|.+++..+..|..+++|++|++++|++..
T Consensus 129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88888888888888877788888888888888888865
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=169.60 Aligned_cols=134 Identities=22% Similarity=0.238 Sum_probs=76.7
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL 190 (757)
Q Consensus 111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 190 (757)
.+++|+|++|.+++..+...|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34566666666654434344566666666666666666555555666666666666666665555555555555555555
Q ss_pred cCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc
Q 041016 191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244 (757)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (757)
++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555555555555555555555555555555544555555555555555555544
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.7e-18 Score=177.09 Aligned_cols=170 Identities=26% Similarity=0.368 Sum_probs=86.6
Q ss_pred CCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEE
Q 041016 133 NLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKL 212 (757)
Q Consensus 133 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 212 (757)
.+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ + ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence 44455555555555442 22 24445555555555555544333 4555555555555555543 1 225555555555
Q ss_pred EccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccc
Q 041016 213 SLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292 (757)
Q Consensus 213 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 292 (757)
++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555555432 2345555555555555555543 345555555555555555554333 555555666666555555
Q ss_pred cccchhhhccCCCcEEEccCCCCc
Q 041016 293 GEISTWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 293 ~~~~~~l~~l~~L~~L~L~~n~l~ 316 (757)
+. + .+..+++|+.|++++|.+.
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCccc
Confidence 32 2 2555556666666665554
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.4e-18 Score=175.95 Aligned_cols=182 Identities=25% Similarity=0.314 Sum_probs=138.6
Q ss_pred CCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCc
Q 041016 478 SNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD 557 (757)
Q Consensus 478 ~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 557 (757)
.+.+.+..+..-...++.|++++|.+... ..+..+++|++|++++|++++..+ +..+++|++|++++|.+.+ + .
T Consensus 33 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~ 106 (291)
T 1h6t_A 33 KKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-S 106 (291)
T ss_dssp CSCTTSEECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-G
T ss_pred CCCcccccchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-h
Confidence 33333333333334466677777766644 247788899999999999886555 8888999999999999875 2 3
Q ss_pred ccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECc
Q 041016 558 GLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLS 637 (757)
Q Consensus 558 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls 637 (757)
.+..+++|++|++++|++++. ..+.. ++.|+.|+++
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~--~~l~~------------------------------------------l~~L~~L~l~ 142 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDI--NGLVH------------------------------------------LPQLESLYLG 142 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCC--GGGGG------------------------------------------CTTCCEEECC
T ss_pred hhccCCCCCEEECCCCcCCCC--hhhcC------------------------------------------CCCCCEEEcc
Confidence 488899999999999988753 23333 3445889999
Q ss_pred CCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016 638 NNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715 (757)
Q Consensus 638 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 715 (757)
+|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++. | .+..+++|+.|++++|+++.
T Consensus 143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 9999865 578889999999999999987655 88899999999999999864 4 48889999999999999875
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.2e-18 Score=167.55 Aligned_cols=156 Identities=25% Similarity=0.313 Sum_probs=115.6
Q ss_pred CCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCC
Q 041016 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSIL 596 (757)
Q Consensus 517 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~ 596 (757)
.+.++.+++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------- 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------- 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc-------
Confidence 345666666665 4444332 677777777777777667777777777777777777764444444444333
Q ss_pred CCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC
Q 041016 597 PTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL 676 (757)
Q Consensus 597 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 676 (757)
+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+
T Consensus 91 -----------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 134 (229)
T 3e6j_A 91 -----------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134 (229)
T ss_dssp -----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGC
T ss_pred -----------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccC
Confidence 77788888887666667788888888999888888 667788888
Q ss_pred CCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016 677 EILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP 718 (757)
Q Consensus 677 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 718 (757)
++|++|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus 135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 889999999998887777788888899999999998887654
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4.8e-18 Score=165.98 Aligned_cols=151 Identities=25% Similarity=0.294 Sum_probs=88.5
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
+.++++++.++ .+| ..+. ++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP-~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIP-TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCC-SSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCC-CccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 46777777765 555 2222 5667777777776655555666666666666666666665566666666666666666
Q ss_pred ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL 267 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 267 (757)
|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666644444455556666666666655555555555555555555555555544444444455555555555444
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.7e-18 Score=179.77 Aligned_cols=175 Identities=25% Similarity=0.212 Sum_probs=106.0
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 114 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
+++++++.++ .+| ..+ .+.+++|+|++|.+++..+..+. ++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 22 ~l~c~~~~l~-~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLP-NVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCS-SCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-ccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3455555554 355 222 23466666666666655555555 666666666666666666556666666666666666
Q ss_pred ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccc---cCCCCCCEEEccCCCCCC
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI---GTLANITILALSNNALTG 269 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~ 269 (757)
|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..+ ..+++|+.|+|++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66665555566666666666666666666556666666666667766666664433333 456666777777776665
Q ss_pred ccchhhhcCCC--CCEEEccCCccc
Q 041016 270 AIPQSIRNMTK--LVTLRLDSNVLS 292 (757)
Q Consensus 270 ~~~~~l~~l~~--L~~L~L~~n~l~ 292 (757)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 54455665554 356666666654
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.8e-18 Score=192.27 Aligned_cols=174 Identities=30% Similarity=0.374 Sum_probs=121.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL 185 (757)
Q Consensus 106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 185 (757)
+..+++|+.|++++|.+. .++ .+..+++|++|+|++|.+++..| +..+++|++|+|++|.+.+. ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 445667777777777776 343 36777777778877777775443 77777777777777777653 257777777
Q ss_pred CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN 265 (757)
Q Consensus 186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 265 (757)
++|+|++|.+.+. ..+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 7777777777642 3477777777777777777654 456777777777777777776544 677777777777777
Q ss_pred CCCCccchhhhcCCCCCEEEccCCccccc
Q 041016 266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294 (757)
Q Consensus 266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 294 (757)
.+++. +.+..+++|+.|++++|.+.+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77653 3567777777777777776643
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5e-18 Score=179.61 Aligned_cols=176 Identities=27% Similarity=0.288 Sum_probs=154.4
Q ss_pred CEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccccc-CCCCCCEEEccCccCCccCchhccCCCCCCEEEccc
Q 041016 138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVA-GLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216 (757)
Q Consensus 138 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 216 (757)
+.++++++.++ .+|..+. +.+++|+|++|.+++..+..|. ++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 68999999998 6787665 4689999999999988888887 999999999999999988888899999999999999
Q ss_pred cccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhh---hcCCCCCEEEccCCcccc
Q 041016 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSI---RNMTKLVTLRLDSNVLSG 293 (757)
Q Consensus 217 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~ 293 (757)
|++++..+..|.++++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..| ..+++|+.|++++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998777889999999999999999998888999999999999999999996555555 568999999999999997
Q ss_pred ccchhhhccCC--CcEEEccCCCCc
Q 041016 294 EISTWLFDLQG--MKSLYLGGNKLK 316 (757)
Q Consensus 294 ~~~~~l~~l~~--L~~L~L~~n~l~ 316 (757)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 76677777776 478888888876
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=7.8e-18 Score=188.68 Aligned_cols=194 Identities=25% Similarity=0.324 Sum_probs=165.5
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
..+..++++.+.+.+.++ +..+++|++|++++|.+. .+| .+..+++|++|+|++|.+.+..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 345556777777765443 567899999999999998 444 58999999999999999997765 89999999999
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG 269 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 269 (757)
|++|.+.+ + ..+..+++|++|+|++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99999985 3 3799999999999999999853 4588999999999999999865 678999999999999999997
Q ss_pred ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCc
Q 041016 270 AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDN 320 (757)
Q Consensus 270 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 320 (757)
..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+...+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 766 89999999999999999864 358899999999999998875433
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=5.6e-18 Score=162.66 Aligned_cols=154 Identities=19% Similarity=0.361 Sum_probs=124.8
Q ss_pred cCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCccccccccccc
Q 041016 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID 591 (757)
Q Consensus 512 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~ 591 (757)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-- 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-- 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC--
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC--
Confidence 56778888999988888 455 5788889999999998665 33478888999999999999887777776655444
Q ss_pred CCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCC-CCccCC
Q 041016 592 TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQ-LQGNIP 670 (757)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p 670 (757)
+.|++++|++++..|..+..+++|++|++++|+ ++ .+|
T Consensus 115 ----------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~ 153 (197)
T 4ezg_A 115 ----------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM 153 (197)
T ss_dssp ----------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG
T ss_pred ----------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH
Confidence 889999999988888889999999999999998 65 455
Q ss_pred cchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016 671 STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715 (757)
Q Consensus 671 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 715 (757)
.+..+++|++|++++|++++. + .+..+++|++|++++|++.+
T Consensus 154 -~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 -PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred -hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 689999999999999999864 3 78899999999999999864
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=7.3e-18 Score=169.51 Aligned_cols=175 Identities=23% Similarity=0.295 Sum_probs=143.2
Q ss_pred CCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCC
Q 041016 485 VPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTS 564 (757)
Q Consensus 485 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 564 (757)
.|..-...+..++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++
T Consensus 13 ~pd~~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~ 86 (263)
T 1xeu_A 13 FPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTK 86 (263)
T ss_dssp CCSHHHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSS
T ss_pred CCCHHHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCC
Confidence 34433334666778888887554 57889999999999999984 45 68889999999999999986555 899999
Q ss_pred CCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCc
Q 041016 565 LQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE 644 (757)
Q Consensus 565 L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~ 644 (757)
|++|++++|++++. |... .+.|+.|++++|++++.
T Consensus 87 L~~L~L~~N~l~~l-~~~~--------------------------------------------~~~L~~L~L~~N~l~~~ 121 (263)
T 1xeu_A 87 LEELSVNRNRLKNL-NGIP--------------------------------------------SACLSRLFLDNNELRDT 121 (263)
T ss_dssp CCEEECCSSCCSCC-TTCC--------------------------------------------CSSCCEEECCSSCCSBS
T ss_pred CCEEECCCCccCCc-Cccc--------------------------------------------cCcccEEEccCCccCCC
Confidence 99999999998753 2211 13458999999999864
Q ss_pred CCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceec
Q 041016 645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGR 716 (757)
Q Consensus 645 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 716 (757)
+ .+..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++.
T Consensus 122 -~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 122 -D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3 589999999999999999976 3689999999999999999987 6788999999999999999875
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.4e-17 Score=158.25 Aligned_cols=104 Identities=20% Similarity=0.320 Sum_probs=39.2
Q ss_pred CCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEE
Q 041016 134 LTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS 213 (757)
Q Consensus 134 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 213 (757)
+++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 334444444444443 222 23344444444444443221 11333333333333333333333333333333333343
Q ss_pred ccccccccccCccccCCCCCCEEEccCC
Q 041016 214 LRQNKFSGGIPLSLLQLRKLETLDLQRN 241 (757)
Q Consensus 214 L~~n~l~~~~~~~l~~l~~L~~L~l~~n 241 (757)
+++|.+++..+..+..+++|++|++++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 3333333333333333333333333333
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=6.1e-19 Score=202.91 Aligned_cols=260 Identities=19% Similarity=0.200 Sum_probs=130.4
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCC-CCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeecc
Q 041016 25 CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNS-SSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVL 103 (757)
Q Consensus 25 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~ 103 (757)
..+.++++|+++.....+.. ...-..|.. .+..+.|.+++++. .+++.++|.+. .+.. .+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~----~~~~~l~L~~n-----~~~~-~~ 189 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSK---------TAKKQQPTGDSTPSGTATNSAVST----PLTPKIELFAN-----GKDE-AN 189 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHH---------TTC------------------------------------------------
T ss_pred ccccchhhhhhhhhhccccc---------CcccCCCcCCCCccccCCCceecC----CccceEEeeCC-----CCCc-ch
Confidence 34567899999998775221 122335643 34567899888864 57888888764 2222 22
Q ss_pred ccccCCCCCCE-----EeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccc
Q 041016 104 APIFRIRSLMT-----LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSR 178 (757)
Q Consensus 104 ~~l~~l~~L~~-----L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 178 (757)
..+.....|+. ++++.|.+. ++...|..+++|++|+|++|.+. .+|..++++++|++|+|++|.++ .+|..
T Consensus 190 ~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 265 (727)
T 4b8c_D 190 QALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAE 265 (727)
T ss_dssp ----------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGG
T ss_pred hhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChh
Confidence 22222222222 233333333 33377888999999999999988 78888889999999999999998 67788
Q ss_pred ccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCC-C
Q 041016 179 VAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN-I 257 (757)
Q Consensus 179 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L 257 (757)
|.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|..+..+.. +
T Consensus 266 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 343 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG 343 (727)
T ss_dssp GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH
T ss_pred hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh
Confidence 899999999999999988 67888999999999999999887 67878899999999999999998888877754422 2
Q ss_pred CEEEccCCCCCCccchhhhcCCCCCEEEccCC--------ccccccchhhhccCCCcEEEccCCCC
Q 041016 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSN--------VLSGEISTWLFDLQGMKSLYLGGNKL 315 (757)
Q Consensus 258 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~L~~n~l 315 (757)
..+++++|.+++.+|.. |+.|+++.| .+.+..+..+..+..++...+++|.+
T Consensus 344 ~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 344 LIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp HHHHHHHCCCCCCCCCC-----------------------------------------------CC
T ss_pred hHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 24678888888877754 445555555 22223333334444455555555554
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=8.7e-20 Score=203.38 Aligned_cols=121 Identities=26% Similarity=0.351 Sum_probs=70.4
Q ss_pred CCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCc
Q 041016 541 LQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSK 620 (757)
Q Consensus 541 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 620 (757)
|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++++++|
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L------------------------------- 488 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL------------------------------- 488 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC-------------------------------
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC-------------------------------
Confidence 5556666665554 343 555666666666666655 445554444333
Q ss_pred cccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccC-CcchhCCCCCCEEeCCCCcCccCCCCC---
Q 041016 621 RGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNI-PSTFGNLEILETLDLSHNSLSGKIPQT--- 696 (757)
Q Consensus 621 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~--- 696 (757)
+.|+|++|++++ +| .++++++|++|+|++|++++.+ |..|+.+++|+.|+|++|.+++.+|..
T Consensus 489 -----------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l 555 (567)
T 1dce_A 489 -----------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555 (567)
T ss_dssp -----------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH
T ss_pred -----------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH
Confidence 556666666654 44 5666666666666666666655 666666666666666666666554422
Q ss_pred ccCCCCCCEEeC
Q 041016 697 FAKLQQLTSLYL 708 (757)
Q Consensus 697 l~~l~~L~~L~l 708 (757)
+..+++|+.||+
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 223566666653
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.5e-17 Score=158.71 Aligned_cols=87 Identities=30% Similarity=0.431 Sum_probs=47.9
Q ss_pred CeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCC
Q 041016 632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711 (757)
Q Consensus 632 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 711 (757)
+.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 44445555554444555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cceecCC
Q 041016 712 KLSGRIP 718 (757)
Q Consensus 712 ~l~g~iP 718 (757)
++.+..|
T Consensus 137 ~l~c~c~ 143 (192)
T 1w8a_A 137 PFNCNCH 143 (192)
T ss_dssp CBCCSGG
T ss_pred CccCcCc
Confidence 5555443
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.7e-19 Score=200.95 Aligned_cols=198 Identities=21% Similarity=0.232 Sum_probs=136.3
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCc-------------CCCCcCccccCCCCCCEEE-ccCCcC
Q 041016 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN-------------LNGSIPSQLFNLRYLEFLD-LSANAI 171 (757)
Q Consensus 106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-Ls~n~l 171 (757)
+..+++|+.|+|++|.+. .+| ..++++++|+.|++++|. ..+.+|..++.+++|+.|+ ++.|.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp-~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred cccCccceeccCChhhHH-hhH-HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 356778888888888875 677 778888888888887664 4566677777777777777 555433
Q ss_pred CCcccc-----cccC--CCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc
Q 041016 172 EGKLSS-----RVAG--LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244 (757)
Q Consensus 172 ~~~~~~-----~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (757)
...... .+.. ...|+.|++++|.+++ +|. ++.+++|++|+|++|.++ .+|..++++++|++|++++|.++
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 211000 0000 1247778888887775 555 777777888888888777 66777777788888888888777
Q ss_pred ccCcccccCCCCCCEEEccCCCCCCcc-chhhhcCCCCCEEEccCCccccccch---hhhccCCCcEEEc
Q 041016 245 GEIPEDIGTLANITILALSNNALTGAI-PQSIRNMTKLVTLRLDSNVLSGEIST---WLFDLQGMKSLYL 310 (757)
Q Consensus 245 ~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L 310 (757)
+ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|.+++..+. .+..+++|+.|++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5 45 6777777888888888777665 77777777788888887777765442 2334677777653
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-17 Score=166.62 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=111.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ 187 (757)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 187 (757)
.+..++.++++.+.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+ +.++++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 34455666677777653 32 3666777777777777776 444 56777777777777777776544 777777777
Q ss_pred EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016 188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL 267 (757)
Q Consensus 188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 267 (757)
|++++|++++ +|. +.. ++|++|++++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|.+
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 7777777764 332 222 6777777777777642 2466677777777777777653 2 566677777777777776
Q ss_pred CCccchhhhcCCCCCEEEccCCccccc
Q 041016 268 TGAIPQSIRNMTKLVTLRLDSNVLSGE 294 (757)
Q Consensus 268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~ 294 (757)
++. ..+..+++|+.|++++|.+++.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 654 5566666677777766666543
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.2e-16 Score=152.50 Aligned_cols=132 Identities=26% Similarity=0.351 Sum_probs=99.6
Q ss_pred CEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCc-ccCCCCCCCEEECcCCcccccCCcccccccccccCCCCC
Q 041016 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD-GLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSIL 596 (757)
Q Consensus 518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~ 596 (757)
+.+++++|.++ .+|..+. .+|++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|.++.+|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------- 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------- 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC-------
Confidence 56777777775 4554443 3777777777777765554 36777777888888887777777766655544
Q ss_pred CCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC
Q 041016 597 PTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL 676 (757)
Q Consensus 597 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 676 (757)
+.|+|++|++++..+..|.++++|++|+|++|++++.+|..|..+
T Consensus 81 -----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (192)
T 1w8a_A 81 -----------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125 (192)
T ss_dssp -----------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred -----------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence 777888888887777778888889999999999988888888888
Q ss_pred CCCCEEeCCCCcCccCCC
Q 041016 677 EILETLDLSHNSLSGKIP 694 (757)
Q Consensus 677 ~~L~~L~Ls~N~l~~~~p 694 (757)
++|++|++++|.+.+..+
T Consensus 126 ~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 126 NSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTCCEEECTTCCBCCSGG
T ss_pred CCCCEEEeCCCCccCcCc
Confidence 999999999998887654
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=5.4e-17 Score=186.74 Aligned_cols=191 Identities=20% Similarity=0.270 Sum_probs=106.1
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCE-----EeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCC
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTY-----LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN 184 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~-----L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 184 (757)
+.++.|+|+.|.+.. ++ ..+.....|+. ++++.|.+. ..|..+..++.|++|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~n~~~~-~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-AN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCc-ch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 457788888888764 34 22222222222 223333333 45677788888888888888887 45555557888
Q ss_pred CCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccC
Q 041016 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN 264 (757)
Q Consensus 185 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 264 (757)
|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+.+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 888888888888 67788888888888888888888 66888888888888888888886 6677788888888888888
Q ss_pred CCCCCccchhhhcCCC-CCEEEccCCccccccchhhhccCCCcEEEccCC
Q 041016 265 NALTGAIPQSIRNMTK-LVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN 313 (757)
Q Consensus 265 n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 313 (757)
|.+++.+|..+..+.. +..+++++|.+++.+|. .|+.|+++.|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 8888877777755422 22366777777776664 3445555555
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=5.9e-16 Score=144.38 Aligned_cols=132 Identities=25% Similarity=0.211 Sum_probs=72.4
Q ss_pred CCCCEEeCCCCCCC-CCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 041016 110 RSLMTLDLSYNSMQ-GEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL 188 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 188 (757)
++|++|++++|.++ +.+| ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 55666666666665 4555 4456666666666666666543 455556666666666666655455555555555555
Q ss_pred EccCccCCccC-chhccCCCCCCEEEccccccccccC---ccccCCCCCCEEEccCCcCc
Q 041016 189 ILDDNLIQGQI-PAEIGNLTNLHKLSLRQNKFSGGIP---LSLLQLRKLETLDLQRNSLS 244 (757)
Q Consensus 189 ~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 244 (757)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555555321 1445555555555555555553332 24445555555555555443
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.2e-16 Score=166.81 Aligned_cols=260 Identities=15% Similarity=0.090 Sum_probs=149.2
Q ss_pred CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccC--------CCCCCEEEccCCcCCCccccccc
Q 041016 109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN--------LRYLEFLDLSANAIEGKLSSRVA 180 (757)
Q Consensus 109 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~~~~~~ 180 (757)
+++|++|||++|++... . ..-+.++.++.+.+..+.+. +.+|.+ |++|+.|+|.+ .++.+.+.+|.
T Consensus 48 l~~L~~LdLs~n~i~~~-~-~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY-S-GKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCE-E-ESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEe-c-CccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 78899999999888611 0 01112223455555555322 345556 89999999988 78878888899
Q ss_pred CCCCCCEEEccCccCCccCchhccCCCCCCEEEcccccc----ccccCccccCCCCCC-EEEccCCcCcccCcccc----
Q 041016 181 GLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF----SGGIPLSLLQLRKLE-TLDLQRNSLSGEIPEDI---- 251 (757)
Q Consensus 181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l---- 251 (757)
++++|+.+++++|.+....+.+|..+.++.++.+..+.. ......+|.++..|+ .+.+.... .++..+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~ 198 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG 198 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc
Confidence 999999999999888877788888888888777765322 222344566666666 44443321 111111
Q ss_pred cCCCCCCEEEccCCCCCCccchhh-hcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccc
Q 041016 252 GTLANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLT 330 (757)
Q Consensus 252 ~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 330 (757)
....+++.+.+.++-.. .....+ ..+++|+++++++|.++......|.++++|+.+++..| ++.++...|..+..|+
T Consensus 199 ~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 12334444444443211 111111 12555555555555555444445555555555555555 5555555555555555
Q ss_pred -eeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEE
Q 041016 331 -ELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVI 380 (757)
Q Consensus 331 -~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~ 380 (757)
.+.+.+ .++...+..|.+|++|+.++++.|+++...+..|..+. |+.++
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 555555 44444455566666666666666666655555555554 55554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.9e-16 Score=143.90 Aligned_cols=134 Identities=26% Similarity=0.244 Sum_probs=104.4
Q ss_pred CCCCCCEEeCCCCcCC-CCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016 133 NLTRLTYLDLKDNNLN-GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK 211 (757)
Q Consensus 133 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 211 (757)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999999987 77888888889999999999988866 67788888888888888888767777777888888
Q ss_pred EEcccccccccc-CccccCCCCCCEEEccCCcCcccCc---ccccCCCCCCEEEccCCCCC
Q 041016 212 LSLRQNKFSGGI-PLSLLQLRKLETLDLQRNSLSGEIP---EDIGTLANITILALSNNALT 268 (757)
Q Consensus 212 L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 268 (757)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888888887532 2567777788888888887775544 35667777777777777665
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=6e-16 Score=141.12 Aligned_cols=127 Identities=24% Similarity=0.230 Sum_probs=76.6
Q ss_pred CCCCEEeCCCCCCC-CCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 041016 110 RSLMTLDLSYNSMQ-GEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL 188 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 188 (757)
++|++|++++|.++ +.+| ..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+.++++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 56677777777766 5566 4566677777777777766644 556666666666666666665555555556666666
Q ss_pred EccCccCCcc-CchhccCCCCCCEEEccccccccccC---ccccCCCCCCEEEcc
Q 041016 189 ILDDNLIQGQ-IPAEIGNLTNLHKLSLRQNKFSGGIP---LSLLQLRKLETLDLQ 239 (757)
Q Consensus 189 ~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~ 239 (757)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666542 23455556666666666666554433 345555555555543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=3.9e-15 Score=141.79 Aligned_cols=84 Identities=36% Similarity=0.446 Sum_probs=64.4
Q ss_pred CeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCC
Q 041016 632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711 (757)
Q Consensus 632 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 711 (757)
+.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.++...+..|..+++|++|++++|
T Consensus 57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 66666666666666667777788888888888888777777888888888888888888766667777888888888888
Q ss_pred ccee
Q 041016 712 KLSG 715 (757)
Q Consensus 712 ~l~g 715 (757)
++.+
T Consensus 137 ~~~C 140 (193)
T 2wfh_A 137 PLYC 140 (193)
T ss_dssp CEEC
T ss_pred Ceec
Confidence 8765
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=7.8e-16 Score=140.34 Aligned_cols=129 Identities=24% Similarity=0.263 Sum_probs=93.3
Q ss_pred CCCCCCEEeCCCCcCC-CCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016 133 NLTRLTYLDLKDNNLN-GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK 211 (757)
Q Consensus 133 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 211 (757)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3477888888888887 67888888888888888888888765 66777778888888888777667777777777777
Q ss_pred EEccccccccc-cCccccCCCCCCEEEccCCcCcccCc---ccccCCCCCCEEEcc
Q 041016 212 LSLRQNKFSGG-IPLSLLQLRKLETLDLQRNSLSGEIP---EDIGTLANITILALS 263 (757)
Q Consensus 212 L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~ 263 (757)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777653 23566667777777777777665443 345566666666554
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.2e-16 Score=166.69 Aligned_cols=284 Identities=12% Similarity=0.075 Sum_probs=209.4
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCC-CCCCCEEeCCCCcCC--CCcCccccCCCCCCEEEccCCcCCCcccccccC---
Q 041016 108 RIRSLMTLDLSYNSMQGEVPGTGFAN-LTRLTYLDLKDNNLN--GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAG--- 181 (757)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~-l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--- 181 (757)
.+.+++.|.++++--...+ ..+.. +++|++|||++|.+. ...+. .++.++.+.+..|. +.+.+|.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~ 94 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVN 94 (329)
T ss_dssp HHHHCSEEEEEEEECHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEET
T ss_pred hhCceeEEEEeccccHHHH--HHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccc
Confidence 3567888888753111011 12333 788999999999987 22222 22335566666663 44566777
Q ss_pred -----CCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCc----CcccCccccc
Q 041016 182 -----LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS----LSGEIPEDIG 252 (757)
Q Consensus 182 -----l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~l~ 252 (757)
+++|+.+++.+ .++.+.+.+|.+|++|+++++++|.+....+.+|..+.++..+....+. ........|.
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 99999999999 8887788899999999999999999987888889988888877776532 2223344566
Q ss_pred CCCCCC-EEEccCCCCCCccchhhh----cCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCc
Q 041016 253 TLANIT-ILALSNNALTGAIPQSIR----NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC 327 (757)
Q Consensus 253 ~l~~L~-~L~L~~n~l~~~~~~~l~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 327 (757)
++..|+ .+.+.... .++..+. ...+++.+.+.++-...........+++|+.+++++|+++.++...|..+.
T Consensus 174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 777777 55554332 2333222 245677777766533322222223489999999999999999999999999
Q ss_pred ccceeecCCccCccCcchhccCCCCCC-EEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeC
Q 041016 328 MLTELSLRSCSVRGSIPLWLSTQTELT-FLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVL 405 (757)
Q Consensus 328 ~L~~L~L~~~~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 405 (757)
.|+++++.++ ++...+.+|.++++|+ .+++.+ .++...+..|..+. |+.++++.|.+....+..|.+|++|+.++.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999998 7767778899999999 999998 77777778899987 999999999999887889999999999874
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.7e-15 Score=139.51 Aligned_cols=87 Identities=28% Similarity=0.351 Sum_probs=69.2
Q ss_pred CeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCC
Q 041016 632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711 (757)
Q Consensus 632 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 711 (757)
+.|++++|++++..+..|..+++|++|++++|++++.++..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 55566666666555556778888888888888888777777888888888899888888777777788888999999999
Q ss_pred cceecCC
Q 041016 712 KLSGRIP 718 (757)
Q Consensus 712 ~l~g~iP 718 (757)
++.+..|
T Consensus 135 ~~~~~~~ 141 (177)
T 2o6r_A 135 PWDCSCP 141 (177)
T ss_dssp CBCCCHH
T ss_pred CeeccCc
Confidence 8888766
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=5e-15 Score=139.30 Aligned_cols=111 Identities=29% Similarity=0.354 Sum_probs=68.9
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
++|++|++++|.+++ ++...|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 467777777777763 4435566777777777777777655555566666666666666666655555556666666666
Q ss_pred ccCccCCccCchhccCCCCCCEEEcccccccc
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG 221 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 221 (757)
+++|.+++..+..+..+++|++|++++|.+.+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66666654444444555556666665555554
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=6.5e-15 Score=140.29 Aligned_cols=127 Identities=27% Similarity=0.331 Sum_probs=89.3
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
+++++++|.++ .+| ..+ .++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip-~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLP-KGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCC-SCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCC-CCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 35667777776 566 322 257788888888777 6677777777777777777777777667777777777777777
Q ss_pred ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 244 (757)
|.+++..|..|..+++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777666666777777777777777776555555666666777776666654
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=4.2e-14 Score=150.54 Aligned_cols=265 Identities=12% Similarity=0.111 Sum_probs=193.6
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ 187 (757)
Q Consensus 108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 187 (757)
.+..++.+.+.++ ++ .|+..+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+..+...+|.++++|+.
T Consensus 111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3467777777653 43 5666778775 6888888776 664555667664 688888875 666677778888888888
Q ss_pred EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016 188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL 267 (757)
Q Consensus 188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 267 (757)
+++++|.++.....+|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88888888765555666 578888888744 65566677888888888888764 45455556666 688888884 445
Q ss_pred CCccchhhhcCCCCCEEEccCCccc-----cccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccC
Q 041016 268 TGAIPQSIRNMTKLVTLRLDSNVLS-----GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342 (757)
Q Consensus 268 ~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~ 342 (757)
+.....+|.++++|+.+.+.++.+. ......|.++++|+.+++. +.++.++...|..+..|+.+.+..+ ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 5555678888888888888777654 3455677888888888888 4577788888888888888888554 5555
Q ss_pred cchhccCCCCCCEEEccCCcccCcccccccCcc--ccEEEcCCCcC
Q 041016 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSELN--LGTVILSDNML 386 (757)
Q Consensus 343 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--L~~L~l~~n~l 386 (757)
...+|.++ +|+.+++.+|.+....+..|..++ ++.+.+..+.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 56778888 899999988888766666676663 77888776654
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=4.3e-14 Score=150.43 Aligned_cols=268 Identities=10% Similarity=0.091 Sum_probs=192.8
Q ss_pred cCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCC
Q 041016 131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLH 210 (757)
Q Consensus 131 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 210 (757)
+..+..++.+.+.++ ++..-..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++...+.+|.+|++|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 344577777777654 554555667765 6888888766 666777777774 688888876 56656667788888888
Q ss_pred EEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCc
Q 041016 211 KLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290 (757)
Q Consensus 211 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 290 (757)
.+++..|.++.....+|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCC
Confidence 888888888755555555 578888888744 66566677888888888888764 45455566766 67888888 344
Q ss_pred cccccchhhhccCCCcEEEccCCCCc-----CCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccC
Q 041016 291 LSGEISTWLFDLQGMKSLYLGGNKLK-----WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEG 365 (757)
Q Consensus 291 l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 365 (757)
++......|.++++|+.+++.++.+. .++...|..+..|+.+.+.+ .++......|.+|++|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 55556677888888888888877665 56677778888888888874 466556677888888888888554 555
Q ss_pred cccccccCccccEEEcCCCcCCCCCCCCccCC-CCCCEEeCcCccc
Q 041016 366 TYPQWLSELNLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNF 410 (757)
Q Consensus 366 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~L~~n~l 410 (757)
.....|..+.|+.+.+.+|......+..+..+ .+++.|++..+.+
T Consensus 337 I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 55667777788888888887776556666666 3677888877654
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=6.4e-14 Score=149.97 Aligned_cols=328 Identities=12% Similarity=0.038 Sum_probs=155.5
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCC
Q 041016 104 APIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLK 183 (757)
Q Consensus 104 ~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 183 (757)
.+|.++++|+.+.+..+ ++ .|+..+|.+|++|+.+++..+ ++..-..+|.+++.|+.+.+..+ +..+...+|.++.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 35666666666666532 43 455556666666666666543 43333445556666665555433 3333344454443
Q ss_pred CCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcc
Q 041016 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALS 263 (757)
Q Consensus 184 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 263 (757)
.++....... ......+|.++++|+.+.+..+.. .....+|.++.+|+.+++..+ ++......|.++..|+.+.+.
T Consensus 141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 3332222221 112234455555555555543322 133344555555555555433 222333344444444444443
Q ss_pred CCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCc
Q 041016 264 NNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSI 343 (757)
Q Consensus 264 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 343 (757)
.+ ... +........+|+.+.+... ++.+....+..+..++.+.+..+... ..
T Consensus 217 ~~------------------------~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~ 268 (394)
T 4fs7_A 217 NS------------------------LYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IG 268 (394)
T ss_dssp TT------------------------CCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-EC
T ss_pred CC------------------------ceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-ee
Confidence 33 221 1122223334444444321 22233333344444444444433221 23
Q ss_pred chhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCC
Q 041016 344 PLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQST 422 (757)
Q Consensus 344 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 422 (757)
...|..+..++.+....+.+. ...+.... |+.+.+.++ +...-..++.+|.+|+.+++..+ ++.....+|.++.
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT 343 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred ccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence 344555556665555443321 11233332 555555433 32233345666677777777543 4444455677777
Q ss_pred CccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEE
Q 041016 423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHV 474 (757)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L 474 (757)
+|+.+++..+ ++.....+|.+|.+|+.+++..+--. .-.+|.++++|+.+
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGGG-GGGGBCTTCEEEEE
T ss_pred CCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCEE-hhheecCCCCCcEE
Confidence 7777777655 55455566777777777777654211 11156666666543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=1.8e-13 Score=146.36 Aligned_cols=322 Identities=12% Similarity=0.077 Sum_probs=216.2
Q ss_pred cEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCC
Q 041016 82 EVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYL 161 (757)
Q Consensus 82 ~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 161 (757)
.++.+.++. .+...-..+|.++++|+.+++..+ ++ .|+..+|.++++|+.+.+..+ +......+|.++..+
T Consensus 72 ~L~~i~lp~------~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 72 KVTEIKIPS------TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TEEEEECCT------TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred CceEEEeCC------CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 466666653 344444568899999999999865 44 577789999999999888765 443555677777655
Q ss_pred CEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCC
Q 041016 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN 241 (757)
Q Consensus 162 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 241 (757)
+...... ...+...+|.++++|+.+.+.++. ......+|.++.+|+.+++..+ +......+|.++..|+.+.+..+
T Consensus 143 ~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 143 EITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 4444333 233456789999999999998764 3356678999999999999876 44456678899999999988776
Q ss_pred cCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcc
Q 041016 242 SLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNV 321 (757)
Q Consensus 242 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 321 (757)
... +.+......+|+.+.+... ++......+..+..++.+.+..+... .....+..+..++.+....+.+ ...
T Consensus 219 ~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~ 291 (394)
T 4fs7_A 219 LYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEK 291 (394)
T ss_dssp CCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTT
T ss_pred ceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccc
Confidence 542 2334455678888888654 33344567788888998888776543 4455677778888777765432 234
Q ss_pred cccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCC
Q 041016 322 SIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLS 401 (757)
Q Consensus 322 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 401 (757)
.|..+..|+.+.+.++ ++.....+|.+|.+|+.+++..+ ++..-..+|.+|.+|+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~------------------------v~~I~~~aF~~c~~L~ 346 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL------------------------VEEIGKRSFRGCTSLS 346 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT------------------------CCEECTTTTTTCTTCC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc------------------------ccEEhHHhccCCCCCC
Confidence 4455555666655443 33333445555666666555422 2222335667778888
Q ss_pred EEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEE
Q 041016 402 VLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVL 451 (757)
Q Consensus 402 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 451 (757)
.+++..+ ++.....+|.++++|+.+++..+- . .+..+|.++++|+.+
T Consensus 347 ~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 347 NINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred EEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 8888766 555556678888888888887552 2 234567777777654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.4e-14 Score=134.42 Aligned_cols=132 Identities=20% Similarity=0.239 Sum_probs=74.3
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCccccCCC-CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCC
Q 041016 105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANL-TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLK 183 (757)
Q Consensus 105 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 183 (757)
.+.++.+|++|++++|.++ .+| . +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3455666677777777666 344 2 3333 3666666666666643 4566666666666666666654444445666
Q ss_pred CCCEEEccCccCCccCch--hccCCCCCCEEEccccccccccCc----cccCCCCCCEEEccCCcC
Q 041016 184 NLKQLILDDNLIQGQIPA--EIGNLTNLHKLSLRQNKFSGGIPL----SLLQLRKLETLDLQRNSL 243 (757)
Q Consensus 184 ~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l 243 (757)
+|++|++++|.+. .+|. .+..+++|++|++++|.+. .+|. .+..+++|++|+++.|..
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666666666664 2333 4555555666666665555 2333 244555555555555543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.6e-16 Score=152.49 Aligned_cols=155 Identities=24% Similarity=0.300 Sum_probs=122.4
Q ss_pred ccCCCCCCEEeCcCCcccCcchh------hccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccc
Q 041016 511 LSNLSLLQHLDLHDNNLTGEFPA------FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG 584 (757)
Q Consensus 511 ~~~l~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 584 (757)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 55667777888888887777665 78888999999999998886 55 7888899999999999887 4565554
Q ss_pred cccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCC
Q 041016 585 NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQ 664 (757)
Q Consensus 585 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 664 (757)
.++. |+.|++++|++++ +| .+..+++|++|++++|+
T Consensus 91 ~~~~------------------------------------------L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 91 VADT------------------------------------------LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp HHHH------------------------------------------CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred cCCc------------------------------------------CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence 4443 4889999999986 44 68888899999999999
Q ss_pred CCccCC-cchhCCCCCCEEeCCCCcCccCCCCC----------ccCCCCCCEEeCCCCcce
Q 041016 665 LQGNIP-STFGNLEILETLDLSHNSLSGKIPQT----------FAKLQQLTSLYLSNNKLS 714 (757)
Q Consensus 665 l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 714 (757)
+++..+ ..+..+++|++|++++|.+++.+|.. +..+++|++|| +|+++
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 986543 57888999999999999998876654 77889999887 66654
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=5e-14 Score=132.25 Aligned_cols=110 Identities=25% Similarity=0.285 Sum_probs=65.9
Q ss_pred ccCCCCCCCEEeCCCCcCCCCcCccccCCC-CCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCC
Q 041016 130 GFANLTRLTYLDLKDNNLNGSIPSQLFNLR-YLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTN 208 (757)
Q Consensus 130 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 208 (757)
.+.++++|++|++++|.++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3566777888888888777 3443 44433 777777777777654 45666666666666666666443344455666
Q ss_pred CCEEEccccccccccCc--cccCCCCCCEEEccCCcCc
Q 041016 209 LHKLSLRQNKFSGGIPL--SLLQLRKLETLDLQRNSLS 244 (757)
Q Consensus 209 L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~ 244 (757)
|++|++++|.+. .+|. .+..+++|++|++++|.++
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 666666666654 3333 4555555555555555554
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=4.1e-16 Score=149.66 Aligned_cols=86 Identities=29% Similarity=0.420 Sum_probs=34.7
Q ss_pred cccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCC
Q 041016 154 QLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL 233 (757)
Q Consensus 154 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 233 (757)
.+.++++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 34444444444444444433 12 3333444444444444443 233333333444444444444442 22 23334444
Q ss_pred CEEEccCCcCc
Q 041016 234 ETLDLQRNSLS 244 (757)
Q Consensus 234 ~~L~l~~n~l~ 244 (757)
++|++++|.++
T Consensus 118 ~~L~l~~N~i~ 128 (198)
T 1ds9_A 118 RVLYMSNNKIT 128 (198)
T ss_dssp SEEEESEEECC
T ss_pred CEEECCCCcCC
Confidence 44444444433
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.7e-13 Score=126.16 Aligned_cols=90 Identities=28% Similarity=0.350 Sum_probs=83.9
Q ss_pred cccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeC
Q 041016 629 AIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYL 708 (757)
Q Consensus 629 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 708 (757)
+.++.|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34588999999999988999999999999999999999888888999999999999999999988888999999999999
Q ss_pred CCCcceecCC
Q 041016 709 SNNKLSGRIP 718 (757)
Q Consensus 709 s~N~l~g~iP 718 (757)
++|++.+..+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999987655
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1e-12 Score=122.70 Aligned_cols=89 Identities=29% Similarity=0.352 Sum_probs=73.3
Q ss_pred ccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCC
Q 041016 630 IYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLS 709 (757)
Q Consensus 630 ~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 709 (757)
.++.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 34778888888887778888888888899999998888777778888889999999998887777778888899999999
Q ss_pred CCcceecCC
Q 041016 710 NNKLSGRIP 718 (757)
Q Consensus 710 ~N~l~g~iP 718 (757)
+|++....+
T Consensus 114 ~N~~~c~~~ 122 (174)
T 2r9u_A 114 NNPWDCECR 122 (174)
T ss_dssp SSCBCTTBG
T ss_pred CCCcccccc
Confidence 998876433
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.4e-12 Score=121.21 Aligned_cols=104 Identities=31% Similarity=0.342 Sum_probs=55.1
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
+++++++|.++ .+| ..+ .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 12 ~~l~~s~n~l~-~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 56666666665 355 222 25566666666666655555555555555555555555554444455555555555555
Q ss_pred ccCCccCchhccCCCCCCEEEccccccc
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFS 220 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 220 (757)
|++++..+..|.++++|++|+|++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555443334444444444444444443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2.1e-12 Score=120.50 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=65.7
Q ss_pred CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192 (757)
Q Consensus 113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 192 (757)
+.+++++|.++ .+| ..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666664 566 3332 6677777777777766666677777777777777776665555566666666666666
Q ss_pred ccCCccCchhccCCCCCCEEEccccccc
Q 041016 193 NLIQGQIPAEIGNLTNLHKLSLRQNKFS 220 (757)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 220 (757)
|++++..+..|..+++|++|+|++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666444444666666666666666554
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=3.6e-11 Score=128.53 Aligned_cols=129 Identities=11% Similarity=0.089 Sum_probs=69.3
Q ss_pred hhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCC
Q 041016 345 LWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS 423 (757)
Q Consensus 345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 423 (757)
..|..+..|+.+.+..+... .....|.... |+.+.+. +.+.......|.+|.+|+.+++..+ ++.+...+|.+|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34555555555555433221 2222333333 4444443 2222233345667777888877654 44455567777888
Q ss_pred ccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCC
Q 041016 424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSN 479 (757)
Q Consensus 424 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n 479 (757)
|+.+.+..+ ++.....+|.+|.+|+.+++.++.... ..+..+..|+.+.+..+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 888888654 554556678888888888887765432 24556666666666544
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=1.6e-10 Score=123.45 Aligned_cols=131 Identities=12% Similarity=0.151 Sum_probs=65.8
Q ss_pred cccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhccc
Q 041016 416 ETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTIL 494 (757)
Q Consensus 416 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 494 (757)
.+|..+..|+.+.+..+... ....+|.++.+|+.+.+... +..... +|.+|.+|+.+++..+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--------------- 321 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG--------------- 321 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT---------------
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc---------------
Confidence 34555555555555443322 33444555556666555422 221111 4555555555555322
Q ss_pred EEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCc
Q 041016 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNN 574 (757)
Q Consensus 495 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~ 574 (757)
++.+...+|.+|++|+.+.|..+ ++.+-..+|.+|.+|+.+++.++... ...+..+..|+.+.+..+.
T Consensus 322 --------v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 322 --------ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp --------CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred --------ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 22233456777777777777544 55455667777777777777776543 2456666777777766554
Q ss_pred c
Q 041016 575 L 575 (757)
Q Consensus 575 l 575 (757)
+
T Consensus 390 ~ 390 (394)
T 4gt6_A 390 I 390 (394)
T ss_dssp -
T ss_pred E
Confidence 3
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=2.5e-13 Score=143.11 Aligned_cols=63 Identities=21% Similarity=0.105 Sum_probs=29.4
Q ss_pred CCCCEEeCCCCCCCCCCCcccc----C-CCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCCcCCC
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGF----A-NLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEG 173 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~----~-~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~ 173 (757)
++|++|+|++|.++.... ..+ . ..++|++|+|++|.++......+. .+++|++|+|++|.++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKC-TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp TTCCEEECTTSCCCHHHH-HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred hhCCEEEecCCCCCHHHH-HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence 456666666666653211 111 1 224566666666655433222222 23445555555555543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=2.2e-13 Score=143.55 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=126.4
Q ss_pred CCCCCEEeCCCCcCCCCcCccccC-----CCCCCEEEccCCcCCCcccccc-cCCCCCCEEEccCccCCccCchhc----
Q 041016 134 LTRLTYLDLKDNNLNGSIPSQLFN-----LRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI---- 203 (757)
Q Consensus 134 l~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~---- 203 (757)
+++|++|+|++|.++......+.. .++|++|+|++|.+.......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999999887544444332 3689999999998875433333 346688999999998875544444
Q ss_pred -cCCCCCCEEEccccccccc----cCccccCCCCCCEEEccCCcCccc----CcccccCCCCCCEEEccCCCCCCc----
Q 041016 204 -GNLTNLHKLSLRQNKFSGG----IPLSLLQLRKLETLDLQRNSLSGE----IPEDIGTLANITILALSNNALTGA---- 270 (757)
Q Consensus 204 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~---- 270 (757)
...++|++|+|++|.++.. ++..+..+++|++|++++|.++.. ++..+...++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3467899999999988642 344556788899999999988753 245567778899999999988753
Q ss_pred cchhhhcCCCCCEEEccCCccccccchhhhccCC-----CcEEE--ccCCCCc
Q 041016 271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG-----MKSLY--LGGNKLK 316 (757)
Q Consensus 271 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-----L~~L~--L~~n~l~ 316 (757)
++..+...++|++|++++|.++......+..+.. |+.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3345556788999999999988665555554322 55555 5555443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=5.9e-11 Score=124.63 Aligned_cols=104 Identities=25% Similarity=0.248 Sum_probs=64.0
Q ss_pred EEEccCC-cCccccCcccCCCCCCCEEECcC-CcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCc
Q 041016 543 VLNLRNT-ALEGSITDGLSNLTSLQILDLSN-NNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSK 620 (757)
Q Consensus 543 ~L~Ls~n-~l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 620 (757)
.++++++ .+++ +|. +..+++|++|+|++ |.+.+..+..|.++.+|
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L------------------------------- 58 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL------------------------------- 58 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-------------------------------
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-------------------------------
Confidence 4566666 5653 555 66677777777764 66665555555544433
Q ss_pred cccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCcc
Q 041016 621 RGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691 (757)
Q Consensus 621 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 691 (757)
+.|+|++|+|++..|..|.++++|++|+|++|+|++.++..|..++ |+.|+|++|.+..
T Consensus 59 -----------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 59 -----------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp -----------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred -----------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 6666666666666666666666666666666666655555555554 6666666666653
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.2e-10 Score=122.13 Aligned_cols=89 Identities=20% Similarity=0.169 Sum_probs=38.7
Q ss_pred ccCCCCCCEEEccC-CcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCC
Q 041016 155 LFNLRYLEFLDLSA-NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL 233 (757)
Q Consensus 155 l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 233 (757)
+..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44444444444442 444444444444444444444444444444444444444444444444444433333333332 4
Q ss_pred CEEEccCCcCc
Q 041016 234 ETLDLQRNSLS 244 (757)
Q Consensus 234 ~~L~l~~n~l~ 244 (757)
++|++.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 44444444443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=1.8e-08 Score=107.00 Aligned_cols=300 Identities=9% Similarity=0.059 Sum_probs=136.3
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI 189 (757)
Q Consensus 110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 189 (757)
.+|+.+.+.. .++ .|+..+|.+|.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +..+...+|... +|+.+.
T Consensus 46 ~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred cCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence 3444444432 222 344455666666666666543 443333445444 4555554432 333333444443 566666
Q ss_pred ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCccc------------CcccccCCCCC
Q 041016 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGE------------IPEDIGTLANI 257 (757)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~------------~~~~l~~l~~L 257 (757)
+..+- ......+|.++ +|+.+.+..+ ++.....+|..+..++.+.+..+..... ....+.....+
T Consensus 120 lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 120 FPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp CCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred CCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 55432 21223334333 3444444332 2223334455555565555544322110 11112223333
Q ss_pred CEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCc
Q 041016 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSC 337 (757)
Q Consensus 258 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~ 337 (757)
..+.+....- ......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ ++.++..
T Consensus 197 ~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~---------------- 257 (379)
T 4h09_A 197 TEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF---------------- 257 (379)
T ss_dssp SEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT----------------
T ss_pred ccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc----------------
Confidence 3333322211 122233444445555544332 22222333444455555554433 3333333
Q ss_pred cCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCc
Q 041016 338 SVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPE 416 (757)
Q Consensus 338 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 416 (757)
+|.++.+|+.+.+..+ +.......|..+. |+.+.+.++.++..-...|.+|.+|+.+.+..+ ++.+-..
T Consensus 258 --------aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 327 (379)
T 4h09_A 258 --------LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVY 327 (379)
T ss_dssp --------TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred --------ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence 3444444444444322 2222223334433 555555444444344456677778888887644 5545556
Q ss_pred ccCCCCCccEEEccCCcccccChHhhhccCCC
Q 041016 417 TIGQSTSVMVLMLSSNNFSGHVPKSISNIYRL 448 (757)
Q Consensus 417 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 448 (757)
+|.++++|+.+.+..+ ++..-..+|.++..+
T Consensus 328 aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 328 AFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred HhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 7778888888887654 444555667666433
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=3.6e-08 Score=104.58 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=83.1
Q ss_pred hhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccc
Q 041016 509 QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQG 588 (757)
Q Consensus 509 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 588 (757)
..+..+..|+.+.+..+ +......++.++..|+.+.+..+ ++.....+|.++.+|+.+++..+ +.......|.++.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 34455555666555443 22233445555666666666544 34344455666666666666433 32222233333333
Q ss_pred cccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCcc
Q 041016 589 MIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGN 668 (757)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 668 (757)
| +.+++.++.++......|.++++|+.++|..+ ++..
T Consensus 288 L------------------------------------------~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I 324 (379)
T 4h09_A 288 L------------------------------------------TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI 324 (379)
T ss_dssp C------------------------------------------CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred c------------------------------------------ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE
Confidence 3 55666666665455566777777888777654 5545
Q ss_pred CCcchhCCCCCCEEeCCCCcCccCCCCCccCCC
Q 041016 669 IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ 701 (757)
Q Consensus 669 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 701 (757)
...+|.++++|+++.+..+ ++.+...+|.+.+
T Consensus 325 ~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 325 QVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred HHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 5567888888888877654 5555566676654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=2e-09 Score=112.26 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=76.5
Q ss_pred cccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhcc--CCCCCCEEEccc--cccccc-----cC
Q 041016 154 QLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG--NLTNLHKLSLRQ--NKFSGG-----IP 224 (757)
Q Consensus 154 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~--n~l~~~-----~~ 224 (757)
.+..+++|+.|+|++|.-. ..+. +. +++|++|++..+.+.......+. .+++|++|+|+. +...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3344555555555554211 1111 22 45566666655554432222232 456666666542 111110 01
Q ss_pred ccc--cCCCCCCEEEccCCcCcccCccccc---CCCCCCEEEccCCCCCCcc----chhhhcCCCCCEEEccCCcccccc
Q 041016 225 LSL--LQLRKLETLDLQRNSLSGEIPEDIG---TLANITILALSNNALTGAI----PQSIRNMTKLVTLRLDSNVLSGEI 295 (757)
Q Consensus 225 ~~l--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~ 295 (757)
..+ ..+++|++|++.+|.+....+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 111 2356777777776666543322222 3566777777777666532 233345567777777777666444
Q ss_pred chhhhccCCCcEEEccCCC
Q 041016 296 STWLFDLQGMKSLYLGGNK 314 (757)
Q Consensus 296 ~~~l~~l~~L~~L~L~~n~ 314 (757)
...+...- ...++++.++
T Consensus 324 ~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC-CSEEECCSBC
T ss_pred HHHHHHHc-CCEEEecCCc
Confidence 43343311 2346666655
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=1.2e-08 Score=106.36 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=83.0
Q ss_pred ccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCcccc--CCCCCCEEEccC--CcCccc----
Q 041016 175 LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL--QLRKLETLDLQR--NSLSGE---- 246 (757)
Q Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~---- 246 (757)
+...+..+++|+.|.+++|.-. .++. +. +++|++|++..|.+.......+. .+++|++|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3455677888888888877311 2232 33 77888888888777544333343 678888888753 111111
Q ss_pred -Ccccc--cCCCCCCEEEccCCCCCCccchhhh---cCCCCCEEEccCCcccccc----chhhhccCCCcEEEccCCCCc
Q 041016 247 -IPEDI--GTLANITILALSNNALTGAIPQSIR---NMTKLVTLRLDSNVLSGEI----STWLFDLQGMKSLYLGGNKLK 316 (757)
Q Consensus 247 -~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~ 316 (757)
+...+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+++.|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11122 2467777777777777644433333 3567777777777766532 223345667777777766655
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.74 E-value=5.8e-11 Score=117.12 Aligned_cols=65 Identities=31% Similarity=0.317 Sum_probs=32.9
Q ss_pred cCCCCCCEEEccCCcCCCc--ccccccCCCCCCEEEccCccCCccCchhccCCC--CCCEEEccccccccc
Q 041016 156 FNLRYLEFLDLSANAIEGK--LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLT--NLHKLSLRQNKFSGG 222 (757)
Q Consensus 156 ~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~ 222 (757)
.++++|++|+|++|++++. ++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 3455666666666666552 234444555555555555555533 2222222 555555555555443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=3.9e-08 Score=92.34 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=22.4
Q ss_pred chhccCCCCCCEEeCcCC-cccCc----chhhccCCCCCCEEEccCCcCc
Q 041016 508 PQNLSNLSLLQHLDLHDN-NLTGE----FPAFLSQLSSLQVLNLRNTALE 552 (757)
Q Consensus 508 ~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~ 552 (757)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 344555566666666666 55432 2223334445555555555543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=3.2e-08 Score=92.88 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=50.0
Q ss_pred eccccccCCCCCCEEeCCCC-CCCCC----CCccccCCCCCCCEEeCCCCcCCCC----cCccccCCCCCCEEEccCCcC
Q 041016 101 VVLAPIFRIRSLMTLDLSYN-SMQGE----VPGTGFANLTRLTYLDLKDNNLNGS----IPSQLFNLRYLEFLDLSANAI 171 (757)
Q Consensus 101 ~~~~~l~~l~~L~~L~Ls~n-~l~~~----i~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l 171 (757)
.+...+...+.|++|+|++| .+... +. ..+...++|++|+|++|.+... +...+...+.|++|+|++|.+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 34445566777777777777 66532 22 3455566677777777766532 223333445566666666655
Q ss_pred CCc----ccccccCCCCCCEEEc--cCccCC
Q 041016 172 EGK----LSSRVAGLKNLKQLIL--DDNLIQ 196 (757)
Q Consensus 172 ~~~----~~~~~~~l~~L~~L~L--~~n~l~ 196 (757)
... +...+...+.|++|+| ++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 532 1223333444444444 444443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=6.6e-07 Score=88.12 Aligned_cols=78 Identities=29% Similarity=0.351 Sum_probs=38.5
Q ss_pred ccccCeEECcCCCCCC--cCCccccCCCCCCEEeCCCCCCCccCCcchhCCC--CCCEEeCCCCcCccCCCC-------C
Q 041016 628 LAIYSLMDLSNNQLSG--EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLE--ILETLDLSHNSLSGKIPQ-------T 696 (757)
Q Consensus 628 ~~~l~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-------~ 696 (757)
++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. +.+..+. +|++|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3445555555555554 2334445555555555555555543 2233333 555555555555544432 2
Q ss_pred ccCCCCCCEEe
Q 041016 697 FAKLQQLTSLY 707 (757)
Q Consensus 697 l~~l~~L~~L~ 707 (757)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34455555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=3.1e-06 Score=77.06 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=37.9
Q ss_pred CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCc-CCCcccccccCC----CCCCEEEccCcc-CCccCchhccCCCCC
Q 041016 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA-IEGKLSSRVAGL----KNLKQLILDDNL-IQGQIPAEIGNLTNL 209 (757)
Q Consensus 136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L 209 (757)
+|++||++++.++..--..+.++++|++|+|++|. ++...-..++.+ ++|++|++++|. ++...-..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554433444555555555555553 333222223332 234555555443 443333334445555
Q ss_pred CEEEcccc
Q 041016 210 HKLSLRQN 217 (757)
Q Consensus 210 ~~L~L~~n 217 (757)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=3.6e-06 Score=76.66 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEEccCcc-CCccCchhccCC----CCCCEEEccccc-cccccCccccCCCC
Q 041016 159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQIPAEIGNL----TNLHKLSLRQNK-FSGGIPLSLLQLRK 232 (757)
Q Consensus 159 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 232 (757)
.+|+.||++++.++...-..+.++++|++|+|++|. +++..-..++.+ ++|++|+|++|. ++...-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777665544455566666666666663 443333334432 245555555553 43332233344444
Q ss_pred CCEEEccCC
Q 041016 233 LETLDLQRN 241 (757)
Q Consensus 233 L~~L~l~~n 241 (757)
|++|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=0.0001 Score=68.40 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=31.1
Q ss_pred hccCCCCCCEEeCcCC-cccCc----chhhccCCCCCCEEEccCCcCcccc----CcccCCCCCCCEEECcCCccc
Q 041016 510 NLSNLSLLQHLDLHDN-NLTGE----FPAFLSQLSSLQVLNLRNTALEGSI----TDGLSNLTSLQILDLSNNNLL 576 (757)
Q Consensus 510 ~~~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~ls~n~l~ 576 (757)
.+.+-+.|++|+|++| .|.+. +..++..-+.|+.|+|++|.+.... .+.+..-+.|++|+|++|.|.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344556666666654 44421 2333444455555555555554221 122333344555555554443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.07 E-value=0.00097 Score=57.75 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=37.6
Q ss_pred CeEECcCCCCC-CcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCc
Q 041016 632 SLMDLSNNQLS-GEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS 690 (757)
Q Consensus 632 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 690 (757)
..++.++++++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777775 34554332 25677777777777666666777777777777777664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.89 E-value=0.00089 Score=62.07 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=20.5
Q ss_pred cCCCCCCEEEccCc-cCCcc----CchhccCCCCCCEEEccccccc
Q 041016 180 AGLKNLKQLILDDN-LIQGQ----IPAEIGNLTNLHKLSLRQNKFS 220 (757)
Q Consensus 180 ~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 220 (757)
.+-+.|+.|+|++| .+... +.+++..-+.|++|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 44455666666654 44321 2233444455555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0022 Score=55.44 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=48.2
Q ss_pred CEEeCCCCCCC-ccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcce
Q 041016 656 KSLNLSYNQLQ-GNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714 (757)
Q Consensus 656 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 714 (757)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.++.|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999997 35665443 57999999999999888888999999999999999885
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.68 E-value=27 Score=27.73 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=18.6
Q ss_pred cccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEcc
Q 041016 174 KLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLR 215 (757)
Q Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 215 (757)
+...+|.++++|+.+.+..+ ++.+...+|.+|.+|+.+.+.
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33344444444544444433 222334445555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.05 E-value=25 Score=27.96 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=28.8
Q ss_pred cccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCC
Q 041016 503 FSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNT 549 (757)
Q Consensus 503 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 549 (757)
++.+-..+|.+|++|+.+.|-.+ ++.+-..+|.+|.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33444556777777777777654 33355566777777777776553
Done!