BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041017
         (499 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
           Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
           [aso3]-
 pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
           Desulfovibrio Gigas At 1.28 A
 pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
           Desulfovibrio Gigas
 pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
           From Desulfovibrio Gigas
 pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
           Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
           [aso3]-
          Length = 907

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 156 GIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHL 207
           G+ +A+VT+D    Q ++   +L +D+ SLC+  +  G + G    GI + L
Sbjct: 769 GVFMAEVTVDVATGQTTVDGMTLMADLGSLCNQLATDGQIYGGLAQGIGLAL 820


>pdb|2Y5Y|A Chain A, Crystal Structure Of Lacy In Complex With An Affinity
           Inactivator
 pdb|2Y5Y|B Chain B, Crystal Structure Of Lacy In Complex With An Affinity
           Inactivator
          Length = 423

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 74  YMKDVQKVQPSEAQV-YAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFS 131
           ++ D+  +  S+  + +A I+    + +PL+GLL+D L   G R+   +I+ G L +F+
Sbjct: 33  WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL---GLRKYLLWIITGMLVMFA 88


>pdb|2V8N|A Chain A, Wild-Type Structure Of Lactose Permease
 pdb|2V8N|B Chain B, Wild-Type Structure Of Lactose Permease
          Length = 417

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 74  YMKDVQKVQPSEAQV-YAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFS 131
           ++ D+  +  S+  + +A I+    + +PL+GLL+D L   G R+   +I+ G L +F+
Sbjct: 33  WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL---GLRKYLLWIITGMLVMFA 88


>pdb|1PV6|A Chain A, Crystal Structure Of Lactose Permease
 pdb|1PV6|B Chain B, Crystal Structure Of Lactose Permease
 pdb|1PV7|A Chain A, Crystal Structure Of Lactose Permease With Tdg
 pdb|1PV7|B Chain B, Crystal Structure Of Lactose Permease With Tdg
 pdb|2CFP|A Chain A, Sugar Free Lactose Permease At Acidic Ph
 pdb|2CFQ|A Chain A, Sugar Free Lactose Permease At Neutral Ph
          Length = 417

 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 74  YMKDVQKVQPSEAQV-YAGITSLPWIVKPLWGLLTDVLPIFGYRRRPYFILAGCLGVFS 131
           ++ D+  +  S+  + +A I+    + +PL+GLL+D L   G R+   +I+ G L +F+
Sbjct: 33  WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL---GLRKYLLWIITGMLVMFA 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,629,094
Number of Sequences: 62578
Number of extensions: 475239
Number of successful extensions: 1221
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 4
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)