Query 041017
Match_columns 499
No_of_seqs 233 out of 2416
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.2E-29 7.4E-34 259.9 23.7 361 46-428 27-411 (451)
2 3o7q_A L-fucose-proton symport 100.0 2.3E-27 7.9E-32 243.8 33.0 341 58-428 36-409 (438)
3 4gc0_A D-xylose-proton symport 99.9 3.6E-26 1.2E-30 238.7 25.1 388 58-466 22-471 (491)
4 4aps_A DI-OR tripeptide H+ sym 99.9 2.6E-24 9E-29 224.7 27.6 346 69-425 34-447 (491)
5 2gfp_A EMRD, multidrug resista 99.9 7.8E-26 2.7E-30 227.9 13.2 343 58-428 10-354 (375)
6 2cfq_A Lactose permease; trans 99.9 7.7E-26 2.6E-30 232.0 6.8 370 68-466 27-408 (417)
7 2xut_A Proton/peptide symporte 99.9 1.8E-20 6.1E-25 197.3 22.0 152 68-227 32-194 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.5E-11 5E-16 126.1 14.3 158 66-228 270-430 (451)
9 3o7q_A L-fucose-proton symport 99.1 1.3E-09 4.6E-14 111.0 15.8 145 68-224 278-425 (438)
10 2cfq_A Lactose permease; trans 99.1 6.9E-10 2.3E-14 113.1 13.3 159 71-238 243-407 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 2.6E-08 8.8E-13 103.2 19.4 124 295-428 48-174 (491)
12 2gfp_A EMRD, multidrug resista 98.8 9.7E-09 3.3E-13 102.5 11.2 151 296-464 30-181 (375)
13 2xut_A Proton/peptide symporte 98.8 5.9E-08 2E-12 101.4 15.3 122 298-428 51-176 (524)
14 4gc0_A D-xylose-proton symport 98.7 2.3E-07 7.8E-12 95.9 15.5 164 299-462 53-224 (491)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=2.2e-29 Score=259.85 Aligned_cols=361 Identities=11% Similarity=0.010 Sum_probs=253.0
Q ss_pred chhhhhHHhHHhhhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHH
Q 041017 46 WSFVLGVVIVYGISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILA 124 (499)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~ 124 (499)
|+.+..+++.+ +..+++........+.+ .+++ .++++.|++.+++.++..+ +|++|+++||+ +||+.++++
T Consensus 27 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~ 98 (451)
T 1pw4_A 27 WQIFLGIFFGY-AAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHH-HHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHHH
Confidence 33334444444 45555544555566544 5678 9999999999999999887 89999999997 678899999
Q ss_pred hHHHHHHHHHHHh----ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHH
Q 041017 125 GCLGVFSMLLLSM----HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSI 200 (499)
Q Consensus 125 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l 200 (499)
.++.+++.+++++ +++++. +++.+++.|++.+...+...+++.|..+ +++|++.+++.+.+.++|.++++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAV--MFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSH--HHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHH--HHHHHHHHHHHhhhccchHHHHHHHHCC--chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 777764 3566888999999888889999999884 4689999999999999999999999
Q ss_pred HhHhhcccC-hhHHHHHHHHHHHHH-HHHHhcccCCCCCCcch---h--hh-------hHHHHHHHHH--HHHHccCcch
Q 041017 201 SGIFVHLIG-PKGVFGLMTIPAGLL-ILVGILLNEPQVPDFNY---K--QV-------NLKFLDAGKA--MWTTLKFPLV 264 (499)
Q Consensus 201 ~g~l~~~~g-w~~~f~~~a~~~~~~-~~~~~~~~e~~~~~~~~---~--~~-------~~~~~~~~~~--~~~~l~~~~~ 264 (499)
++.+.+..| ||+.|++.++..++. ++..+++||++++.+.. + +. +++.+...++ ..+.+++|.+
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 254 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHH
Confidence 999888888 999999988877665 34456678765542110 0 00 0000011111 2456778887
Q ss_pred hhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 041017 265 WRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDY--PFQDVLFWAQLLSG 342 (499)
Q Consensus 265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~--~~r~~l~~~~~~~~ 342 (499)
+...+..++............+.+..+ .+|+++.+.+.+.....++.+++.++.+++.||+ ++|+.+..+.++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKE---VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTT---BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 766655554433211111111222222 2788999999988888899999999999999998 88888777665554
Q ss_pred HHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhh-HHHhHHHHHH
Q 041017 343 LSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNA-GVLSSSWGGG 421 (499)
Q Consensus 343 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~ig~~l~g 421 (499)
...+..+.... ..+.+.......+.++..+....+..++..|..|++.+|+++|+.+.+.++ |..++|.+.|
T Consensus 332 ~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 332 TIATIVYWMNP-------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp HHHHHHTTSCC-------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111110 012222222233334444444444567889999999999999999999999 9999999999
Q ss_pred HHHHHhC
Q 041017 422 LLLHILK 428 (499)
Q Consensus 422 ~l~~~~g 428 (499)
.+.+..|
T Consensus 405 ~l~~~~g 411 (451)
T 1pw4_A 405 YTVDFFG 411 (451)
T ss_dssp HHHHSSC
T ss_pred HHHHhcC
Confidence 9998765
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.96 E-value=2.3e-27 Score=243.84 Aligned_cols=341 Identities=10% Similarity=0.039 Sum_probs=243.2
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHH-
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLL- 135 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~- 135 (499)
+..+++........+. +++++|+|+++.|++.+++.++..+ +|++|+++||+ +||+.++++.++.+++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHH
Confidence 4556655555566654 5678999999999999999999886 89999999997 68888999999999998888
Q ss_pred --HhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhh-cccC---
Q 041017 136 --SMHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFV-HLIG--- 209 (499)
Q Consensus 136 --~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~-~~~g--- 209 (499)
+++++++. ++..+++.|++.+...+...+++.|..+ +++|++..++.+.+.++|.++++.+++.+. +..+
T Consensus 110 ~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 110 PAAEIMNYTL--FLVGLFIIAAGLGCLETAANPFVTVLGP--ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHTTCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSSC--STTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred hccccccHHH--HHHHHHHHHhhHHHhhhhHHHHHHHHcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77778764 4567888999999999999999999884 468999999999999999999999999988 5544
Q ss_pred ----------------------hhHHHHHHHHHHHHHHHHHh--cccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchh
Q 041017 210 ----------------------PKGVFGLMTIPAGLLILVGI--LLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVW 265 (499)
Q Consensus 210 ----------------------w~~~f~~~a~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (499)
||+.|++.++...+..+..+ ..||++++++++++ ++ +..+..++.+|+|.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~ 261 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-QG---SFSASLSRLARIRHWR 261 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-TT---SHHHHHHHHTTCSHHH
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc-cc---chhhhHHHHHhChHHH
Confidence 99999887766655533332 34555443221111 11 1123345678899887
Q ss_pred hHHHHHhhhhhccccccccceeE-EecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 041017 266 RPCLYMYLSFAVSLNIHEGLFYW-YTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLS 344 (499)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~ 344 (499)
...+..++............+.+ ..+. +|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+.++.++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEI---PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 76665554333211111111222 3332 6889999999888888999999999999999999999988877666554
Q ss_pred hhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 041017 345 GMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLL 424 (499)
Q Consensus 345 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~ 424 (499)
.+. ... .+.....+. ..+.++..+.......++..|..|++ +++..++.. ...+|..++|.+.|.+.
T Consensus 339 ~~~-~~~---------~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~ 405 (438)
T 3o7q_A 339 CLI-SAF---------AGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS 405 (438)
T ss_dssp HHH-HHH---------CCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHH-HHH---------cCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence 321 111 111111111 23334444444444567778888866 788888776 77899999999999999
Q ss_pred HHhC
Q 041017 425 HILK 428 (499)
Q Consensus 425 ~~~g 428 (499)
+..|
T Consensus 406 ~~~g 409 (438)
T 3o7q_A 406 DAAG 409 (438)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9876
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=3.6e-26 Score=238.72 Aligned_cols=388 Identities=14% Similarity=0.095 Sum_probs=241.9
Q ss_pred hhccchhhhhhhhHHHHhhhccC--------CChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQK--------VQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLG 128 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g--------~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~ 128 (499)
+.+|+|.+..+.+.+. ++++++ .+.++.|++.+++.++..+ .+++|+++||+ +||+.++++.++.
T Consensus 22 ~~~Gyd~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-----GRk~~l~~~~~l~ 95 (491)
T 4gc0_A 22 LLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GRRDSLKIAAVLF 95 (491)
T ss_dssp HHHHHHHHGGGGTHHH-HHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHH
Confidence 5678887766666653 334442 2345678888889999888 67899999997 7889999999999
Q ss_pred HHHHHHHHh------------------ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHH
Q 041017 129 VFSMLLLSM------------------HEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCS 190 (499)
Q Consensus 129 ~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~ 190 (499)
.++.+++++ ++|++ .+++.|++.|+|.+...+...+++.|.++ +++|++..++.+.+.
T Consensus 96 ~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~--~l~~~R~l~G~g~G~~~~~~~~~i~E~~p--~~~rg~~~~~~~~~~ 171 (491)
T 4gc0_A 96 FISGVGSAWPELGFTSINPDNTVPVYLAGYVP--EFVIYRIIGGIGVGLASMLSPMYIAELAP--AHIRGKLVSFNQFAI 171 (491)
T ss_dssp HHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSC--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCC--HHhhhhhHHhhhhhh
Confidence 999988884 45554 35678999999999999899999999984 478999999999999
Q ss_pred HHHHHHHHHHHhHhhcc--------cChhHHHHHHHHHHHHHHHHHhcccCCCCCCc---chhhhhHH------------
Q 041017 191 AIGALIGYSISGIFVHL--------IGPKGVFGLMTIPAGLLILVGILLNEPQVPDF---NYKQVNLK------------ 247 (499)
Q Consensus 191 ~~G~~lg~~l~g~l~~~--------~gw~~~f~~~a~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~------------ 247 (499)
.+|.++++.++..+... .+||..+.+..++.++.++..++.||+|++.. +.++..+.
T Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~ 251 (491)
T 4gc0_A 172 IFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ 251 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence 99999998887665432 35777777767776666677788999986531 11100000
Q ss_pred ----HHHHH----HH--HHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHH
Q 041017 248 ----FLDAG----KA--MWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILA 317 (499)
Q Consensus 248 ----~~~~~----~~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g 317 (499)
.++.. +. ....++.++........++.+.. .. ....+|.+...+..+.+............+..+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4gc0_A 252 AVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFV--GI-NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTF 328 (491)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHT--CH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHh--hh-hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHH
Confidence 00000 00 01112222222222222222211 11 11112211111114455555555556667778888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHH-HHHHHhhCCCC
Q 041017 318 AILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPL-LVLSSRLCPSG 396 (499)
Q Consensus 318 ~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~-~~~~~~~~p~~ 396 (499)
..+.+++.||+|+|+.+..+.....++.+........ .......+....+........+.|. ..+.+|++|.+
T Consensus 329 ~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~ 402 (491)
T 4gc0_A 329 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 402 (491)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence 8888899999999998887776666543221111110 1111122222222223334444454 47889999999
Q ss_pred hhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHH-hhcCCCCCCCC
Q 041017 397 IEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVI-FLVPRGDPDTS 466 (499)
Q Consensus 397 ~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~-~~lp~~~~~~~ 466 (499)
.|+++.|+.+.+++++..+++.+.+.+.+...... .+. ....+.+.+++++++.++. +++||||+++.
T Consensus 403 ~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~-~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 403 IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFH-NGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-hhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 99999999999999999999888776654321110 010 1122344455556666555 58999998765
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=2.6e-24 Score=224.71 Aligned_cols=346 Identities=15% Similarity=0.057 Sum_probs=208.8
Q ss_pred hhHHHHhhhc-----cCCChhHHHHHHHhhhchhhh-hhHHhhhccc-cccCCCCcchHHHHHhHHHHHHHHHHHhccch
Q 041017 69 VGTQYYMKDV-----QKVQPSEAQVYAGITSLPWIV-KPLWGLLTDV-LPIFGYRRRPYFILAGCLGVFSMLLLSMHEKL 141 (499)
Q Consensus 69 ~~~~~~l~~~-----~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~-~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~ 141 (499)
...+.|++++ +|+|+++.+++.+++.++..+ +|+.|+++|| + +||+.++.+.++..++.+.++++++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~~~~~~~~~~~~~~~~~~~~~~~ 108 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARPAVFWGGVLIMLGHIVLALPFGA 108 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHHHHSCCST
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3444566666 999999999999999999876 8899999999 7 68888999999999999999998887
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHH
Q 041017 142 HLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPA 221 (499)
Q Consensus 142 ~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~ 221 (499)
+. +++.+++.|++.+...+...+++.|..+++++.|+...+..+.+.++|..++|.+++.+.+..|||+.|++.++..
T Consensus 109 ~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~ 186 (491)
T 4aps_A 109 SA--LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGM 186 (491)
T ss_dssp TH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 74 3456788899999888889999999986543457888888999999999999999999999999999999877665
Q ss_pred HHHHHHHh-cccCCCC----CCcc--hhhhhHHHHHH-------------------------------------------
Q 041017 222 GLLILVGI-LLNEPQV----PDFN--YKQVNLKFLDA------------------------------------------- 251 (499)
Q Consensus 222 ~~~~~~~~-~~~e~~~----~~~~--~~~~~~~~~~~------------------------------------------- 251 (499)
++..+..+ ..|+..+ .+++ .+++.++..+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (491)
T 4aps_A 187 FIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFA 266 (491)
T ss_dssp HHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHH
Confidence 55433222 2222111 1110 01100110000
Q ss_pred --HHHHH--HHccCcc--hhhHHHHHhhhhhccccccccceeEEecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041017 252 --GKAMW--TTLKFPL--VWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPSFSQETVGFVLSVGPVGSILAAILYQNSL 325 (499)
Q Consensus 252 --~~~~~--~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~ 325 (499)
.++.. ...+++. .+...+..++............+.+..+. .+.+....+.+.....++.+++..+.+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 343 (491)
T 4aps_A 267 WMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER---VDSSWFPVSWFQSLNPLFIMLYTPFFAWLW 343 (491)
T ss_dssp HHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS---CCCSSSCSGGGTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH---hccCccCHHHHhccchHHHHHHHHHHHHHH
Confidence 00000 0011111 11111111111111111111111222222 333323334444555566666677777777
Q ss_pred CCCCchhHHH-----HHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHHHHhhhhHHHHHHHhhCCCChhHH
Q 041017 326 KDYPFQDVLF-----WAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMVGQLKWMPLLVLSSRLCPSGIEGT 400 (499)
Q Consensus 326 ~~~~~r~~l~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~ 400 (499)
||+++|+... .+.++.+++.+.. ...............+.......+.++..+....+..++..|..|++.+|+
T Consensus 344 ~r~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 422 (491)
T 4aps_A 344 TAWKKNQPSSPTKFAVGLMFAGLSFLLM-AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQ 422 (491)
T ss_dssp HHTTTC---CHHHHHHHHHHHHHHHTTT-HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSS
T ss_pred HHHhccCCCchHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence 7777664433 4444444332211 111100000000111222223334445545545556788999999999999
Q ss_pred HHHHHHHHHhhHHHhHHHHHHHHHH
Q 041017 401 FFALLMSIDNAGVLSSSWGGGLLLH 425 (499)
Q Consensus 401 ~~gl~~~~~~lg~~ig~~l~g~l~~ 425 (499)
++|+.+...++|..++|.+++.+.+
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998877654
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=7.8e-26 Score=227.92 Aligned_cols=343 Identities=13% Similarity=0.081 Sum_probs=234.3
Q ss_pred hhccchhhhhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHH
Q 041017 58 ISQGLGGALARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLS 136 (499)
Q Consensus 58 ~~~g~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~ 136 (499)
+..+++........+. +.+++|.|+++.+++.+...++..+ +|++|+++||+ +||+.++.+..+..++...++
T Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHH
Confidence 3444444455555554 4668999999999999999999876 89999999997 566777888888888888888
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHH
Q 041017 137 MHEKLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216 (499)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~ 216 (499)
++++++. ++..+++.+++.+...+...+++.|..+ +++|++.++..+.+.++|..+++.+++++.+..|||+.|++
T Consensus 84 ~~~~~~~--l~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 84 TTSSLTV--LIAASAMQGMGTGVGGVMARTLPRDLYE--RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HhccHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 8887664 4557788899999888888999999885 36899999999999999999999999999998899999998
Q ss_pred HHHHHHHHHH-HHhcccCCCCCCcchhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCC
Q 041017 217 MTIPAGLLIL-VGILLNEPQVPDFNYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAG 295 (499)
Q Consensus 217 ~a~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (499)
.++..++..+ ..+++||++++++++++.. +..++.+|+|+++...+..++............+.+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 229 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVDAPRTRLL-------TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV--- 229 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTTCCCCCTT-------TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH---
T ss_pred HHHHHHHHHHHHHHHCcccCCCCcccccHH-------HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 8877766544 4556788765443211110 1123345566666555444443322111111111222221
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|+++.+.+.+.....++.+++..+.+++.||.+++ ...+........+........ . .++.+.......+.+
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~l~g 302 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-G----VMNVWTLLVPAALFF 302 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-H----HHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-c----cccHHHHHHHHHHHH
Confidence 567788888888888899999999999998887652 222222212211111111000 0 011122222333444
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
+..+....+..++..|..| +.+|+++|+.+...++|..++|.+.|.+.+..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 303 FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5555545555678888888 899999999999999999999999998877644
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=7.7e-26 Score=231.99 Aligned_cols=370 Identities=13% Similarity=0.104 Sum_probs=204.7
Q ss_pred hhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHH---HHHHhccchHH
Q 041017 68 RVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSM---LLLSMHEKLHL 143 (499)
Q Consensus 68 ~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~---~~~~~~~~~~~ 143 (499)
....+.|+++++|+|+++.|++.+...++..+ +|++|+++||+ +||+.++++..+..++. ..+++.+....
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888999999999999999998876 89999999997 45555665555443321 11122211100
Q ss_pred HHHHHHHHHHHhHHHH----HHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHH
Q 041017 144 VFAVSALTASSAGIAI----ADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTI 219 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~----~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~ 219 (499)
.....+.+.+++.+. ......++..|. +++++...+..+.+.++|..++|.+++++.+ .+||+.|++.++
T Consensus 102 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~ 175 (417)
T 2cfq_A 102 -NILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG 175 (417)
T ss_dssp -TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 001112222222221 222223333222 2345666777777778999999999998886 589999988766
Q ss_pred HHHHHHHHHhccc-CCCCCCc-chhhhhHHHHHHHHHHHHHccCcchhhHHHHHhhhhhccccccccceeEEecCCCCCC
Q 041017 220 PAGLLILVGILLN-EPQVPDF-NYKQVNLKFLDAGKAMWTTLKFPLVWRPCLYMYLSFAVSLNIHEGLFYWYTDSKAGPS 297 (499)
Q Consensus 220 ~~~~~~~~~~~~~-e~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 297 (499)
..++..+..++.| |+++..+ ++++++++.+...++.++.+++|+++...+..+.....+..+....+.+.....+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (417)
T 2cfq_A 176 CALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE 255 (417)
T ss_dssp TTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 6444433334444 4322110 0000000000112334567788887665544332221111110111112222110011
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHHH
Q 041017 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRMV 377 (499)
Q Consensus 298 ~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (499)
.+....+....+..++.+++..+.+++.||+++|+.+..+.++.++..+. ... .++....+....+..+.
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-SSF---------ATSALEVVILKTLHMFE 325 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HTT---------CCSHHHHHHHTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH-HHH---------hccHHHHHHHHHHHHHH
Confidence 23345566667777788888999999999999999887766555543211 111 11111111122222333
Q ss_pred HHhhhhHHHHHHHhhCCCChhHHHHHH-HHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHHHHh
Q 041017 378 GQLKWMPLLVLSSRLCPSGIEGTFFAL-LMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLCVIF 456 (499)
Q Consensus 378 ~~~~~~p~~~~~~~~~p~~~~g~~~gl-~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~~~~ 456 (499)
......+...+..|..|++.+|+.+++ ++...++|..++|.++|.+.+..|+ ...+.+.+++.+++.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHH
Confidence 333333446788999999999999999 4778889999999999998886542 1223344444455544433
Q ss_pred -hcCCCCCCCC
Q 041017 457 -LVPRGDPDTS 466 (499)
Q Consensus 457 -~lp~~~~~~~ 466 (499)
+.|++++...
T Consensus 398 ~~~~~~~~~~~ 408 (417)
T 2cfq_A 398 FTLSGPGPLSL 408 (417)
T ss_dssp TSSCCSCTTCS
T ss_pred hhhcCCCchHH
Confidence 4565544443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.86 E-value=1.8e-20 Score=197.32 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=123.1
Q ss_pred hhhHHHHhhhccC------CChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhcc-
Q 041017 68 RVGTQYYMKDVQK------VQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHE- 139 (499)
Q Consensus 68 ~~~~~~~l~~~~g------~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~- 139 (499)
....+.|+++++| +|+.+.|++.+++.++..+ .|+.|+++||+ .+||+.++++.++.+++.+.+++++
T Consensus 32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~~~~~~~~~~~~~~~~~~~~ 107 (524)
T 2xut_A 32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTILWLSLIYCVGHAFLAIFEH 107 (524)
T ss_dssp HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445567788899 9999999999999998876 88999999985 1577788888888888888888887
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHH---HHHHHHHHHHHHHHHHhHhhcccChhHHHHH
Q 041017 140 KLHLVFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSL---CSLCSAIGALIGYSISGIFVHLIGPKGVFGL 216 (499)
Q Consensus 140 ~~~~~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~---~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~ 216 (499)
+.+. ++..+++.|++.+...+...+++.|..++ ++|++..+. .+.+.++|.+++|.+++.+.+..|||+.|++
T Consensus 108 ~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 108 SVQG--FYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp CHHH--HHHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred cHHH--HHHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 7664 34567888999888888889999998853 567655555 8889999999999999999998999999998
Q ss_pred HHHHHHHHHHH
Q 041017 217 MTIPAGLLILV 227 (499)
Q Consensus 217 ~a~~~~~~~~~ 227 (499)
.++..++..+.
T Consensus 184 ~~~~~~~~~~~ 194 (524)
T 2xut_A 184 PGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766554333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.31 E-value=1.5e-11 Score=126.06 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=114.4
Q ss_pred hhhhhHHHHhhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHH-HHHHHHHhccchHH
Q 041017 66 LARVGTQYYMKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGV-FSMLLLSMHEKLHL 143 (499)
Q Consensus 66 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~-~~~~~~~~~~~~~~ 143 (499)
......+.++++.+|.++.+.+++.+...++..+ .++.|+++||+. .+||+.++.+..+.. ++.+.+.+.++...
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---RGNRGATGVFFMTLVTIATIVYWMNPAGNP 346 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTCHHHHHHHHHHHHHHHHHHTTSCCTTCH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHhcccCH
Confidence 3445666788877999999999998888887776 788999999851 145555555555544 56666665543222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHH-HHHHHHHHHhHhhcccChhHHHHHHHHHHH
Q 041017 144 VFAVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAI-GALIGYSISGIFVHLIGPKGVFGLMTIPAG 222 (499)
Q Consensus 144 ~~~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~-G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~ 222 (499)
.......++.+++.+...+...+++.|..+ +++|++++++.+....+ |..+++.+.|.+.+..||+..|++.++..+
T Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 347 TVDMICMIVIGFLIYGPVMLIGLHALELAP--KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 424 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 223334455666666666666778888774 36799999999999999 999999999999999999999988777666
Q ss_pred HHHHHH
Q 041017 223 LLILVG 228 (499)
Q Consensus 223 ~~~~~~ 228 (499)
+..+..
T Consensus 425 ~~~~~~ 430 (451)
T 1pw4_A 425 LAVILL 430 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.08 E-value=1.3e-09 Score=110.98 Aligned_cols=145 Identities=14% Similarity=0.015 Sum_probs=106.5
Q ss_pred hhhHHHH-hhhccCCChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHH
Q 041017 68 RVGTQYY-MKDVQKVQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVF 145 (499)
Q Consensus 68 ~~~~~~~-l~~~~g~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~ 145 (499)
....+.| +++.+|.++.+.+...+...+...+ .++.|+++||+ +||+.+..+.++..++.+.+.+.++....
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 351 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGGHVGL- 351 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHCCHHHHH-
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHcCCcHHH-
Confidence 3455566 7877899999999998888777766 88899999997 56777778888877777777777665421
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHHhHhhcccC-hhHHHHHHHHHHHHH
Q 041017 146 AVSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSLCSLCSAIGALIGYSISGIFVHLIG-PKGVFGLMTIPAGLL 224 (499)
Q Consensus 146 ~~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~~~~~~~~G~~lg~~l~g~l~~~~g-w~~~f~~~a~~~~~~ 224 (499)
...++.+++.+...+...++..|..+ ++++...++.. ...+|..++|.+.|.+.+..| ++..|.+.++..++.
T Consensus 352 --~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 352 --IALTLCSAFMSIQYPTIFSLGIKNLG---QDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp --HHHHHHHHHHTTHHHHHHHHHHSSCG---GGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 22345556666666666677666654 33777777666 566999999999999999988 998888765544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.08 E-value=6.9e-10 Score=113.07 Aligned_cols=159 Identities=11% Similarity=0.047 Sum_probs=104.7
Q ss_pred HHHHhhhccC---CChhHHHHHHHhhhchhhh-hhHHhhhccccccCCCCcchHHHHHhHHHHHHHHHHHhccchHHHHH
Q 041017 71 TQYYMKDVQK---VQPSEAQVYAGITSLPWIV-KPLWGLLTDVLPIFGYRRRPYFILAGCLGVFSMLLLSMHEKLHLVFA 146 (499)
Q Consensus 71 ~~~~l~~~~g---~s~~~~g~~~~~~~l~~~~-~pl~G~lsD~~~~~g~~Rk~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 146 (499)
.+.|+++.++ .+..+.+...++..+...+ .++.|+++||+ +||+.++.+..+.+++.+.+++.++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 315 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATSALEV-- 315 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCCSHHHH--
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhccHHHH--
Confidence 4445554444 2344556666655555554 77899999997 56667777777777776666666665432
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcccchHHH-HHHHHHHHHHHHHHHHhHhhcccChhHHHHHHHHHHHHHH
Q 041017 147 VSALTASSAGIAIADVTIDACVAQNSICHPSLASDMQSL-CSLCSAIGALIGYSISGIFVHLIGPKGVFGLMTIPAGLLI 225 (499)
Q Consensus 147 ~~~~~l~~~g~~~~~~~~~alv~e~~~~~~~~rg~~~~~-~~~~~~~G~~lg~~l~g~l~~~~gw~~~f~~~a~~~~~~~ 225 (499)
+...++.+++.+.......+++.|..+ ++.|+..++. .+....+|..++|.++|.+.+..|++..|.+.++..++..
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~ 393 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQFE--VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 222333444444444445667777764 3578888888 4778889999999999999998889888888777766554
Q ss_pred H-HHhcccCCCCCC
Q 041017 226 L-VGILLNEPQVPD 238 (499)
Q Consensus 226 ~-~~~~~~e~~~~~ 238 (499)
+ ..+..||+++.+
T Consensus 394 ~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 394 LISVFTLSGPGPLS 407 (417)
T ss_dssp HHHTTSSCCSCTTC
T ss_pred HHHHhhhcCCCchH
Confidence 3 344567655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.95 E-value=2.6e-08 Score=103.22 Aligned_cols=124 Identities=12% Similarity=0.008 Sum_probs=95.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHH
Q 041017 295 GPSFSQETVGFVLSVGPVGSILAAILYQNSLKD-YPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGI 373 (499)
Q Consensus 295 ~~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 373 (499)
++|+|..+.|++.....++..++.++.|++.|| +|+|+.+..+.++.++..+.. .. .++....+....+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~l 117 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL-AL---------PFGASALFGSIIL 117 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH-HS---------CCSTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-HH---------hhhHHHHHHHHHH
Confidence 378999999999999999999999999999999 899999988877776654321 11 1122222233344
Q ss_pred HHHHHHhhhhHHHHHHHhhCCCCh--hHHHHHHHHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 374 SRMVGQLKWMPLLVLSSRLCPSGI--EGTFFALLMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 374 ~~~~~~~~~~p~~~~~~~~~p~~~--~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
.++..+....+..+++.|.+|++. |++.+++++...++|..++|.+++.+.+..|
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555555555556788999999988 8888999999999999999999999998765
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.85 E-value=9.7e-09 Score=102.49 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=107.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHH
Q 041017 296 PSFSQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISR 375 (499)
Q Consensus 296 ~g~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 375 (499)
+|.|+.+.|++.....++..++.++.|++.||+|+|+.+..+.+...+..+... .. ++....+....+.+
T Consensus 30 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~---------~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TT---------SSLTVLIAASAMQG 99 (375)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-Hh---------ccHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999888777666543211 11 11122222334445
Q ss_pred HHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHHHHH-H
Q 041017 376 MVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRITPLC-V 454 (499)
Q Consensus 376 ~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li~l~-~ 454 (499)
+..+.......+++.|..|+++|++.+++.+...++|..++|.+++.+.+..|+ ...+.+.++..++..+ .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW--------RACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH--------HHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH--------HHHHHHHHHHHHHHHHHH
Confidence 555555555568889999999999999999999999999999999988876542 2233333444444433 3
Q ss_pred HhhcCCCCCC
Q 041017 455 IFLVPRGDPD 464 (499)
Q Consensus 455 ~~~lp~~~~~ 464 (499)
.+.+||++++
T Consensus 172 ~~~~~~~~~~ 181 (375)
T 2gfp_A 172 ARWMPETRPV 181 (375)
T ss_dssp CCSSCCCSTT
T ss_pred HHHCcccCCC
Confidence 3466776544
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.79 E-value=5.9e-08 Score=101.45 Aligned_cols=122 Identities=9% Similarity=-0.032 Sum_probs=90.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHhhhhhhhhhhcccccCCCchhhHHHHHHHHHH
Q 041017 298 FSQETVGFVLSVGPVGSILAAILYQNSLKDY-PFQDVLFWAQLLSGLSGMLDLLLVLRLNLKFGIPDFVALVIDEGISRM 376 (499)
Q Consensus 298 ~s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~-~~r~~l~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (499)
+|+.+.|++.....++..++.++.|++.||+ |+|+.+..+.++.++..+.. .+. ..+....+....+.++
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~l~g~ 121 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL-AIF--------EHSVQGFYTGLFLIAL 121 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH-HHT--------SSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHh--------cccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 99999888777666643321 111 1022222333345555
Q ss_pred HHHhhhhHHHHHHHhhCCCChhHHHHHH---HHHHHhhHHHhHHHHHHHHHHHhC
Q 041017 377 VGQLKWMPLLVLSSRLCPSGIEGTFFAL---LMSIDNAGVLSSSWGGGLLLHILK 428 (499)
Q Consensus 377 ~~~~~~~p~~~~~~~~~p~~~~g~~~gl---~~~~~~lg~~ig~~l~g~l~~~~g 428 (499)
..+....+..+++.|.+|++.|++..+. .+...++|..++|.+++.+.+..|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 122 GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG 176 (524)
T ss_dssp HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5565555667889999999998755444 888999999999999998887544
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.68 E-value=2.3e-07 Score=95.95 Aligned_cols=164 Identities=16% Similarity=0.099 Sum_probs=104.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHhhhhhhhhhhccc-------cc-CCCchhhHHHH
Q 041017 299 SQETVGFVLSVGPVGSILAAILYQNSLKDYPFQDVLFWAQLLSGLSGMLDLLLVLRLNL-------KF-GIPDFVALVID 370 (499)
Q Consensus 299 s~~~~g~~~~~~~i~~i~g~~l~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~l~~~~~~-------~~-~~~~~~~~~~~ 370 (499)
++...|++.+...+|.++|+++.|++.||+|||+.+.++.++..+..+........... .. ..++....+..
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 34556777777889999999999999999999999998887777654432111000000 00 01122222233
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhCCCChhHHHHHHHHHHHhhHHHhHHHHHHHHHHHhCCcccCCChhHHHHHHHHhHhHH
Q 041017 371 EGISRMVGQLKWMPLLVLSSRLCPSGIEGTFFALLMSIDNAGVLSSSWGGGLLLHILKVTRTQFHNLWLAILIRNILRIT 450 (499)
Q Consensus 371 ~~l~~~~~~~~~~p~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~~i~~~~~li 450 (499)
=.+.++..+.......++++|.+|++.|+...++.+.....|..+++.++.......+....+.........+..+..++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 34455555555555678999999999999999999999999988888887777665443322222233333334444455
Q ss_pred HHHHHhhcCCCC
Q 041017 451 PLCVIFLVPRGD 462 (499)
Q Consensus 451 ~l~~~~~lp~~~ 462 (499)
.+...+++||+.
T Consensus 213 ~~~~~~~~peSp 224 (491)
T 4gc0_A 213 FLMLLYTVPESP 224 (491)
T ss_dssp HHHHGGGSCCCH
T ss_pred hhhhhhcCCCCh
Confidence 555556888863
Done!