BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041019
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 10/73 (13%)
Query: 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWE 68
E T+YD+L V+ +A+ EE++ YR L YHPDK N G++F ++ +A+E
Sbjct: 5 ETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN----------EGEKFKQISQAYE 54
Query: 69 ILSNSRSRAVYDS 81
+LS+++ R +YD
Sbjct: 55 VLSDAKKRELYDK 67
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 33/174 (18%)
Query: 1 MIFGERAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRF 60
M+ E+ ++ Y IL A+ +++ Y+ IL YHPDK Q+T + E +F
Sbjct: 1 MMAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDK-QSTDVPAGTVEECVQKF 59
Query: 61 LKVQKAWEILSNSRSRAVYD-----SELRALRQGMIAAEDVSLEDMMIEDNGEVLDLFYK 115
+++ +AW+IL N ++ YD +LR + G + A+ V LE+M + +
Sbjct: 60 IEIDQAWKILGNEETKREYDLQRCEDDLRNV--GPVDAQ-VYLEEMSWNEGDH--SFYLS 114
Query: 116 CRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLL 169
CRCG +S+ S D + ++ C +CSL + LL
Sbjct: 115 CRCGGKYSV----------------------SKDEAEEVSLISCDTCSLIIELL 146
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 11/75 (14%)
Query: 8 IEET-HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKA 66
++ET +YD+L V+ DAS E++ YR L +HPDK + +E +F ++ +A
Sbjct: 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAE----------QFKQISQA 54
Query: 67 WEILSNSRSRAVYDS 81
+E+LS+ + R +YD
Sbjct: 55 YEVLSDEKKRQIYDQ 69
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 11/74 (14%)
Query: 8 IEETH-YDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKA 66
++ET YD+L V A+ +E++ GYR A L YHPDK +E +F ++ +A
Sbjct: 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE----------KFKEISEA 54
Query: 67 WEILSNSRSRAVYD 80
+EIL++ + R +YD
Sbjct: 55 FEILNDPQKREIYD 68
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 11 THYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEIL 70
+Y++L V+ AS E+I+ YR L +HPDK D+ E+ +F V +A+E+L
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDK------NPDNKEEAEKKFKLVSEAYEVL 63
Query: 71 SNSRSRAVYD 80
S+S+ R++YD
Sbjct: 64 SDSKKRSLYD 73
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWE 68
++ +Y+IL V A EIR Y+ + YHPD+ Q D E+ +F ++++A+E
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG-------DKEAEAKFKEIKEAYE 54
Query: 69 ILSNSRSRAVYDS 81
+L++S+ RA YD
Sbjct: 55 VLTDSQKRAAYDQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWE 68
++ +Y+IL V A EIR Y+ + YHPD+ Q D E+ +F ++++A+E
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG-------DKEAEAKFKEIKEAYE 54
Query: 69 ILSNSRSRAVYDS 81
+L++S+ RA YD
Sbjct: 55 VLTDSQKRAAYDQ 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71
+Y+IL V A EIR Y+ + YHPD+ Q D E+ +F ++++A+E+L+
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG-------DKEAEAKFKEIKEAYEVLT 57
Query: 72 NSRSRAVYDS 81
+S+ RA YD
Sbjct: 58 DSQKRAAYDQ 67
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 11 THYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEIL 70
++Y+IL V AS ++I+ YR L +HPDK + E ++ +F +V +A+E+L
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEK------KFKEVAEAYEVL 56
Query: 71 SNSRSRAVYDSELRALRQGMIA 92
S+ R +YD R R+G+
Sbjct: 57 SDKHKREIYD---RYGREGLTG 75
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71
+Y++L V AS E I+ YR L +HPDK E E+ RF +V +A+E+LS
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKE------EAERRFKQVAEAYEVLS 64
Query: 72 NSRSRAVYD 80
+++ R +YD
Sbjct: 65 DAKKRDIYD 73
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKA 66
A++ Y +L V AS +I+ Y+ +HPDK + D + DRF+++ KA
Sbjct: 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDK--------NKDPGAEDRFIQISKA 65
Query: 67 WEILSNSRSRAVYD 80
+EILSN R YD
Sbjct: 66 YEILSNEEKRTNYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 5 ERAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQ 64
E+ +++ Y IL A+ +++ Y+ IL YHPDK Q+ + E +F+++
Sbjct: 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDK-QSADVPAGTMEECMQKFIEID 69
Query: 65 KAWEILSNSRSRAVYD 80
+AW+IL N ++ YD
Sbjct: 70 QAWKILGNEETKKKYD 85
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71
+Y L + AS EEI+ YR L YHPDK + + ++F ++ +A+++LS
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG--------AEEKFKEIAEAYDVLS 56
Query: 72 NSRSRAVYD 80
+ R R ++D
Sbjct: 57 DPRKREIFD 65
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEI 69
E+ Y +L + +A+ ++I+ YR L YHPDK + + E+ D+F ++ A I
Sbjct: 17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDK-------NPDNPEAADKFKEINNAHAI 69
Query: 70 LSNSRSRAVYDSELRALRQGMIAAEDVSLEDM 101
L+++ R +YD + G+ AE E++
Sbjct: 70 LTDATKRNIYD---KYGSLGLYVAEQFGEENV 98
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71
+Y+IL V AS E+++ YR L +HPDK +H + + F + A+ +LS
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDK--------NHAPGATEAFKAIGTAYAVLS 60
Query: 72 NSRSRAVYD 80
N R YD
Sbjct: 61 NPEKRKQYD 69
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71
+Y I+ V+ + I+T YR YHPD + D E+ RF +V +AWE+LS
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP------DAEA--RFKEVAEAWEVLS 58
Query: 72 NSRSRAVYDS 81
+ + RA YD
Sbjct: 59 DEQRRAEYDQ 68
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEI 69
+ Y +L V AS EIR ++ L HPDK N + GD FLK+ +A+E+
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP------NAHGD-FLKINRAYEV 54
Query: 70 LSNSRSRAVYD 80
L + R YD
Sbjct: 55 LKDEDLRKKYD 65
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWE 68
++ Y +L V AS EIR ++ L HPDK N + GD FLK+ +A+E
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP------NAHGD-FLKINRAYE 72
Query: 69 ILSNSRSRAVYD 80
+L + R YD
Sbjct: 73 VLKDEDLRKKYD 84
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71
+Y IL V+ +A +EI YR L +HPD QN E ++ +F+ + A E+LS
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK----KAEKKFIDIAAAKEVLS 439
Query: 72 NSRSRAVYD 80
+ R +D
Sbjct: 440 DPEXRKKFD 448
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71
+YDIL V AS +I+ + + YHPDK ++ D E+ +F ++ +A+E LS
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP------DAEA--KFREIAEAYETLS 60
Query: 72 NSRSRAVYDS 81
++ R YD+
Sbjct: 61 DANRRKEYDT 70
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71
+Y IL V+ +A +EI YR L +HPD QN E ++ +F+ + A E+LS
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK----KAEKKFIDIAAAKEVLS 439
Query: 72 NSRSRAVYD 80
+ R +D
Sbjct: 440 DPEMRKKFD 448
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71
+Y IL V +AS +EI+ Y YHPD ++ D ++ ++F ++ +A+E+LS
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD-------DPKAKEKFSQLAEAYEVLS 61
Query: 72 NSRSRAVYDS 81
+ R YD+
Sbjct: 62 DEVKRKQYDA 71
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 1 MIFGERAIE-ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDR 59
+ F A+E + +Y IL V+ + I+T YR YHPD + ++D E+ +
Sbjct: 18 LYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK------ENDAEA--K 69
Query: 60 FLKVQKAWEILSNSRSRAVYDS 81
F + +AWE+L + + RA YD
Sbjct: 70 FKDLAEAWEVLKDEQRRAEYDQ 91
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 13 YDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSN 72
YD+L V A+ +I+ Y YHPD+ ++ E+ +RF ++ +A+ +L +
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA-------EAAERFTRISQAYVVLGS 72
Query: 73 SRSRAVYDSELRALRQGMIAAEDV 96
+ R YD +G+++ ED+
Sbjct: 73 ATLRRKYD-------RGLLSDEDL 89
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEI 69
E +Y +L +S E+I ++ L HPDK + ++ + F K+QKA EI
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDK-------HPENPKAVETFQKLQKAKEI 72
Query: 70 LSNSRSRAVYDSELRA 85
L+N SRA YD R+
Sbjct: 73 LTNEESRARYDHWRRS 88
>pdb|2JR7|A Chain A, Solution Structure Of Human Desr1
Length = 89
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 23/86 (26%)
Query: 94 EDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPA 153
++V +ED +++ E FY C CGD FSI +L+ NG ++
Sbjct: 6 DEVEIEDFQYDEDSETY--FYPCPCGDNFSITKEDLE--------NGEDVAT-------- 47
Query: 154 SVILPCGSCSLHVRLLVNADIEVTAD 179
C SCSL ++++ + D V+ +
Sbjct: 48 -----CPSCSLIIKVIYDKDQFVSGE 68
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 10 ETHYDILSV-RVDASYEEIRTGYRSAILNYHPDKLQNTSE--LSDHDHESGDRFLKVQKA 66
E YD+L V R + +++ YR+ +HPD+++N E L++ +RF + A
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAE------ERFRVIATA 68
Query: 67 WEILSNSRSRAVYDSEL 83
+E L + ++ YD L
Sbjct: 69 YETLKDDEAKTNYDYYL 85
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1
J-Domain
Length = 106
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 27 IRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWE 68
+R Y+ A+L HPDKLQ ++ + + F +Q+AW+
Sbjct: 57 VRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98
>pdb|1WGE|A Chain A, Solution Structure Of The Mouse Desr1
Length = 83
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 23/80 (28%)
Query: 94 EDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPA 153
++V +ED +++ E FY C CGD F+I + L+NG ++
Sbjct: 13 DEVEIEDFQYDEDSETY--FYPCPCGDNFAITKED--------LENGEDVAT-------- 54
Query: 154 SVILPCGSCSLHVRLLVNAD 173
C SCSL ++++ + D
Sbjct: 55 -----CPSCSLIIKVIYDKD 69
>pdb|1YWS|A Chain A, Solution Structure Of Ybl071w-A From Saccharomyces
Cerevisiae
Length = 82
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 23/84 (27%)
Query: 90 MIAAEDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPD 149
M +++ +EDM E ++ Y C CGD F I LDDM G K+++
Sbjct: 1 MSTYDEIEIEDMTFEPENQMFT--YPCPCGDRFQI---YLDDMF-----EGEKVAV---- 46
Query: 150 TSPASVILPCGSCSLHVRLLVNAD 173
C SCSL + ++ + +
Sbjct: 47 ---------CPSCSLMIDVVFDKE 61
>pdb|1YOP|A Chain A, The Solution Structure Of Kti11p
Length = 83
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 23/80 (28%)
Query: 94 EDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPA 153
+++ +EDM E ++ Y C CGD F I LDDM G K+++
Sbjct: 6 DEIEIEDMTFEPENQMFT--YPCPCGDRFQI---YLDDMF-----EGEKVAV-------- 47
Query: 154 SVILPCGSCSLHVRLLVNAD 173
C SCSL + ++ + +
Sbjct: 48 -----CPSCSLMIDVVFDKE 62
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEI 69
ET + + + + E+++ YR A+L HPDK ++ + F+++ AW
Sbjct: 49 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATG----QPYEQYAKMIFMELNDAWSE 104
Query: 70 LSNSRSRAVY 79
N + +Y
Sbjct: 105 FENQGQKPLY 114
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 14 DILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEI 69
D +R ++ Y E+ + S P+ LQ E++D D RF K K W +
Sbjct: 200 DRFYMRTNSFYPEVELNFISVFWPQVPNGLQAAYEIADRDEV---RFFKGNKYWAV 252
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 13 YDILSVRVDASYEEIRTGYRSAILNYHPDK 42
+D+L V+ AS +E+ YR + HPDK
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|1AIN|A Chain A, Crystal Structure Of Human Annexin I At 2.5 Angstroms
Resolution
Length = 314
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWE 68
E T DIL+ R +A ++I+ Y LQ T + D E+ + L
Sbjct: 30 EATIIDILTKRNNAQRQQIKAAY-----------LQETGKPLD---ETLKKALTGHLEEV 75
Query: 69 ILSNSRSRAVYDS-ELRALRQGMIAAEDVSLEDMMIEDNGEVLDL 112
+L+ ++ A +D+ ELRA +G+ ED +E + N E+ D+
Sbjct: 76 VLALLKTPAQFDADELRAAMKGLGTDEDTLIEILASRTNKEIRDI 120
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 25 EEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVY 79
E+++ YR A+L HPDK ++ + F ++ AW N + +Y
Sbjct: 51 EQVKKVYRKAVLVVHPDKATG----QPYEQYAKXIFXELNDAWSEFENQGQKPLY 101
>pdb|2QZI|A Chain A, The Crystal Structure Of A Conserved Protein Of Unknown
Function From Streptococcus Thermophilus Lmg 18311.
pdb|2QZI|B Chain B, The Crystal Structure Of A Conserved Protein Of Unknown
Function From Streptococcus Thermophilus Lmg 18311.
pdb|2QZI|C Chain C, The Crystal Structure Of A Conserved Protein Of Unknown
Function From Streptococcus Thermophilus Lmg 18311.
pdb|2QZI|D Chain D, The Crystal Structure Of A Conserved Protein Of Unknown
Function From Streptococcus Thermophilus Lmg 18311
Length = 103
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 41 DKLQNTSELSDHDHESGDR---FLKVQKAWEILSNSRSRAVYDSELRALRQGMIAA---E 94
++L NT + +G+ F + K +E+L +++ RAV D+EL +R+ + +
Sbjct: 19 NQLDNTDAFLVETYSAGNTDVVFTQAPKHYELLISNKHRAVKDNELEVIREFFLKRKIDK 78
Query: 95 DVSLEDMM 102
D+ L D +
Sbjct: 79 DIVLXDKL 86
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEI 69
ET + + + + E+++ YR A+L HPDK ++ + F+++ AW
Sbjct: 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP----YEQYAKMIFMELNDAWSE 172
Query: 70 LSNSRSRAV 78
N + +
Sbjct: 173 FENQGQKPL 181
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 118 CGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVR 167
CG C+S SM + + +L N + Q+P SP V+ SCS + +
Sbjct: 231 CGSCYSFASMGMLEARIRILTNNS----QTPILSPQEVV----SCSQYAQ 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,412,646
Number of Sequences: 62578
Number of extensions: 201729
Number of successful extensions: 567
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 41
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)