Query 041019
Match_columns 182
No_of_seqs 277 out of 1483
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 5.5E-25 1.2E-29 189.4 6.5 74 8-88 2-75 (371)
2 KOG0713 Molecular chaperone (D 99.9 6.7E-24 1.4E-28 179.0 7.9 75 7-88 13-87 (336)
3 KOG0712 Molecular chaperone (D 99.9 2.4E-21 5.3E-26 164.9 10.1 72 8-89 2-73 (337)
4 PRK14288 chaperone protein Dna 99.8 3.7E-21 8E-26 167.4 7.4 70 9-85 2-71 (369)
5 PRK14296 chaperone protein Dna 99.8 5.3E-21 1.1E-25 166.5 7.0 69 9-85 3-71 (372)
6 PRK14279 chaperone protein Dna 99.8 1.2E-20 2.5E-25 165.4 7.8 71 7-84 6-76 (392)
7 PRK14286 chaperone protein Dna 99.8 3.2E-20 6.9E-25 161.7 7.1 70 9-85 3-72 (372)
8 PF00226 DnaJ: DnaJ domain; I 99.8 4.5E-20 9.7E-25 122.1 6.2 64 11-80 1-64 (64)
9 KOG0715 Molecular chaperone (D 99.8 9.7E-20 2.1E-24 153.6 9.3 71 8-86 41-111 (288)
10 PTZ00037 DnaJ_C chaperone prot 99.8 5E-20 1.1E-24 162.5 6.8 68 7-85 25-92 (421)
11 PRK14287 chaperone protein Dna 99.8 7.5E-20 1.6E-24 159.3 7.4 69 9-85 3-71 (371)
12 KOG0717 Molecular chaperone (D 99.8 9.3E-20 2E-24 158.8 7.5 83 4-92 2-84 (508)
13 PRK14283 chaperone protein Dna 99.8 1.1E-19 2.4E-24 158.5 7.2 69 9-85 4-72 (378)
14 PRK14299 chaperone protein Dna 99.8 1.2E-19 2.7E-24 153.3 7.2 69 9-85 3-71 (291)
15 PRK14276 chaperone protein Dna 99.8 1.2E-19 2.5E-24 158.5 6.9 69 9-85 3-71 (380)
16 PRK14282 chaperone protein Dna 99.8 1.3E-19 2.8E-24 157.7 7.1 71 9-85 3-73 (369)
17 PRK14285 chaperone protein Dna 99.8 1.5E-19 3.2E-24 157.2 7.1 70 9-85 2-71 (365)
18 PRK14291 chaperone protein Dna 99.8 1.4E-19 3.1E-24 158.1 7.1 69 9-85 2-70 (382)
19 PRK14298 chaperone protein Dna 99.8 1.5E-19 3.3E-24 157.7 6.5 69 9-85 4-72 (377)
20 PRK14294 chaperone protein Dna 99.8 2.6E-19 5.6E-24 155.7 7.7 70 9-85 3-72 (366)
21 PRK14295 chaperone protein Dna 99.8 2.8E-19 6.1E-24 156.5 7.9 66 9-81 8-73 (389)
22 PRK14280 chaperone protein Dna 99.8 2.2E-19 4.9E-24 156.6 7.1 69 9-85 3-71 (376)
23 PRK14277 chaperone protein Dna 99.8 2.9E-19 6.3E-24 156.3 7.6 70 9-85 4-73 (386)
24 PRK14278 chaperone protein Dna 99.8 2.3E-19 5E-24 156.6 6.6 67 10-84 3-69 (378)
25 PRK14301 chaperone protein Dna 99.8 2.6E-19 5.7E-24 156.0 6.9 70 9-85 3-72 (373)
26 PRK14297 chaperone protein Dna 99.8 3E-19 6.4E-24 156.0 6.4 70 9-85 3-72 (380)
27 KOG0716 Molecular chaperone (D 99.8 4.8E-19 1E-23 145.7 7.2 72 8-86 29-100 (279)
28 PRK14284 chaperone protein Dna 99.8 5E-19 1.1E-23 155.1 7.1 69 10-85 1-69 (391)
29 PRK10767 chaperone protein Dna 99.8 6E-19 1.3E-23 153.6 7.3 70 9-85 3-72 (371)
30 KOG0691 Molecular chaperone (D 99.8 7.9E-19 1.7E-23 147.8 7.5 72 9-87 4-75 (296)
31 PRK14281 chaperone protein Dna 99.8 6.7E-19 1.4E-23 154.6 6.8 70 9-85 2-71 (397)
32 PRK10266 curved DNA-binding pr 99.7 2.1E-18 4.6E-23 146.7 7.5 67 10-84 4-70 (306)
33 TIGR02349 DnaJ_bact chaperone 99.7 2E-18 4.3E-23 149.5 6.7 67 11-85 1-67 (354)
34 PRK14300 chaperone protein Dna 99.7 2.1E-18 4.5E-23 150.3 6.8 68 10-85 3-70 (372)
35 PRK14289 chaperone protein Dna 99.7 3.3E-18 7.1E-23 149.7 7.6 70 9-85 4-73 (386)
36 PRK14293 chaperone protein Dna 99.7 4.2E-18 9E-23 148.5 7.1 69 9-85 2-70 (374)
37 PRK14290 chaperone protein Dna 99.7 3.3E-18 7.2E-23 148.7 6.3 69 10-84 3-71 (365)
38 PRK14292 chaperone protein Dna 99.7 3.7E-18 8E-23 148.6 6.5 67 10-84 2-68 (371)
39 PF05207 zf-CSL: CSL zinc fing 99.7 2.8E-18 6.1E-23 110.7 3.7 55 94-171 1-55 (55)
40 KOG0718 Molecular chaperone (D 99.7 3.9E-18 8.4E-23 149.0 5.8 76 7-86 6-81 (546)
41 PTZ00341 Ring-infected erythro 99.7 6.6E-18 1.4E-22 158.2 7.4 72 7-86 570-641 (1136)
42 smart00271 DnaJ DnaJ molecular 99.7 1.2E-17 2.7E-22 108.7 6.3 59 10-74 1-59 (60)
43 KOG2923 Uncharacterized conser 99.7 1.2E-17 2.6E-22 108.4 3.4 64 92-178 3-66 (67)
44 KOG0719 Molecular chaperone (D 99.7 2.4E-17 5.2E-22 133.1 5.3 75 6-85 10-84 (264)
45 cd06257 DnaJ DnaJ domain or J- 99.7 7.1E-17 1.5E-21 103.2 6.5 55 11-72 1-55 (55)
46 TIGR03835 termin_org_DnaJ term 99.6 3.9E-16 8.5E-21 143.6 7.5 68 10-85 2-69 (871)
47 KOG0721 Molecular chaperone (D 99.6 5.9E-16 1.3E-20 123.9 6.3 72 7-85 96-167 (230)
48 COG2214 CbpA DnaJ-class molecu 99.6 8.4E-16 1.8E-20 121.6 7.0 70 7-83 3-73 (237)
49 PRK05014 hscB co-chaperone Hsc 99.6 1.2E-15 2.6E-20 119.9 7.0 73 10-84 1-75 (171)
50 PHA03102 Small T antigen; Revi 99.6 3.8E-16 8.3E-21 120.3 4.1 65 10-85 5-71 (153)
51 PRK01356 hscB co-chaperone Hsc 99.6 1.4E-15 3E-20 119.0 6.1 71 10-84 2-74 (166)
52 PRK00294 hscB co-chaperone Hsc 99.6 4.2E-15 9.2E-20 116.9 7.9 75 8-84 2-78 (173)
53 PRK03578 hscB co-chaperone Hsc 99.6 5.5E-15 1.2E-19 116.6 7.2 75 8-84 4-80 (176)
54 KOG0720 Molecular chaperone (D 99.6 4E-15 8.7E-20 130.0 6.4 72 7-86 232-303 (490)
55 COG5216 Uncharacterized conser 99.5 6.4E-15 1.4E-19 94.5 3.8 65 92-179 3-67 (67)
56 KOG0624 dsRNA-activated protei 99.5 4.2E-15 9.1E-20 126.9 3.7 73 6-82 390-462 (504)
57 PRK09430 djlA Dna-J like membr 99.5 4.9E-14 1.1E-18 117.9 5.7 65 8-72 198-262 (267)
58 KOG0722 Molecular chaperone (D 99.5 3.8E-14 8.3E-19 116.1 3.9 71 7-85 30-100 (329)
59 PTZ00100 DnaJ chaperone protei 99.4 1.3E-13 2.8E-18 101.5 5.7 55 6-71 61-115 (116)
60 KOG0550 Molecular chaperone (D 99.4 1.6E-13 3.5E-18 119.1 3.7 72 6-83 369-440 (486)
61 KOG0714 Molecular chaperone (D 99.4 3E-13 6.5E-18 111.7 3.3 70 9-84 2-71 (306)
62 PRK01773 hscB co-chaperone Hsc 99.3 2.8E-12 6.2E-17 100.9 6.0 73 10-84 2-76 (173)
63 PHA02624 large T antigen; Prov 99.3 1.9E-12 4E-17 118.0 5.4 61 8-79 9-71 (647)
64 COG5407 SEC63 Preprotein trans 99.2 8.4E-12 1.8E-16 109.3 4.5 76 8-85 96-171 (610)
65 KOG1150 Predicted molecular ch 99.2 3.2E-11 7E-16 95.9 7.2 71 7-83 50-120 (250)
66 TIGR00714 hscB Fe-S protein as 99.2 7.6E-11 1.7E-15 91.5 7.2 61 22-84 3-63 (157)
67 COG5269 ZUO1 Ribosome-associat 99.0 2.8E-10 6E-15 94.4 3.6 73 6-83 39-114 (379)
68 KOG0568 Molecular chaperone (D 98.6 6.6E-08 1.4E-12 78.9 4.9 56 9-72 46-102 (342)
69 KOG1789 Endocytosis protein RM 98.4 4.1E-07 8.9E-12 87.0 5.6 54 8-71 1279-1336(2235)
70 KOG0723 Molecular chaperone (D 98.3 1.3E-06 2.8E-11 63.0 5.1 56 7-73 53-108 (112)
71 KOG3192 Mitochondrial J-type c 98.0 1.3E-05 2.7E-10 61.7 4.8 79 5-85 3-83 (168)
72 KOG0431 Auxilin-like protein a 97.6 4.4E-05 9.5E-10 68.5 3.7 55 17-71 395-449 (453)
73 COG1076 DjlA DnaJ-domain-conta 97.5 4E-05 8.8E-10 60.3 0.9 61 10-70 113-173 (174)
74 COG1076 DjlA DnaJ-domain-conta 96.8 0.00065 1.4E-08 53.4 2.1 72 11-84 2-75 (174)
75 PF03656 Pam16: Pam16; InterP 96.0 0.018 3.9E-07 43.2 5.2 51 11-72 59-109 (127)
76 TIGR02098 MJ0042_CXXC MJ0042 f 94.0 0.062 1.4E-06 31.3 2.7 34 114-168 3-37 (38)
77 PF13717 zinc_ribbon_4: zinc-r 90.5 0.21 4.6E-06 29.1 1.9 32 114-166 3-35 (36)
78 KOG0724 Zuotin and related mol 89.3 0.49 1.1E-05 40.6 4.0 60 21-83 3-62 (335)
79 COG1996 RPC10 DNA-directed RNA 89.3 0.59 1.3E-05 29.2 3.3 34 111-170 4-38 (49)
80 PF13719 zinc_ribbon_5: zinc-r 88.1 0.52 1.1E-05 27.5 2.4 34 114-168 3-37 (37)
81 PF11833 DUF3353: Protein of u 87.4 1.2 2.6E-05 35.7 4.8 38 19-71 1-38 (194)
82 TIGR01206 lysW lysine biosynth 86.3 1 2.2E-05 28.8 3.0 32 114-169 3-35 (54)
83 PF05180 zf-DNL: DNL zinc fing 85.8 0.93 2E-05 30.1 2.8 16 153-168 26-41 (66)
84 PF14687 DUF4460: Domain of un 85.1 1.4 2.9E-05 32.3 3.7 49 20-71 4-52 (112)
85 PF13446 RPT: A repeated domai 82.8 1.6 3.5E-05 28.0 3.0 27 10-36 5-31 (62)
86 KOG3277 Uncharacterized conser 81.1 2.2 4.8E-05 33.0 3.5 18 152-169 100-117 (165)
87 smart00659 RPOLCX RNA polymera 79.0 2.4 5.2E-05 25.8 2.6 29 113-168 2-31 (44)
88 PF12662 cEGF: Complement Clr- 74.0 1.5 3.2E-05 23.3 0.6 15 113-127 1-15 (24)
89 smart00834 CxxC_CXXC_SSSS Puta 73.4 3 6.5E-05 24.2 1.9 16 111-126 3-19 (41)
90 PF03604 DNA_RNApol_7kD: DNA d 71.9 2.4 5.3E-05 24.0 1.2 11 157-167 18-28 (32)
91 PF09723 Zn-ribbon_8: Zinc rib 67.1 7.7 0.00017 23.1 2.8 16 111-126 3-19 (42)
92 KOG1779 40s ribosomal protein 60.8 13 0.00027 25.6 3.2 36 111-168 30-65 (84)
93 cd01388 SOX-TCF_HMG-box SOX-TC 60.5 23 0.00049 23.1 4.5 44 28-83 13-56 (72)
94 PRK00398 rpoP DNA-directed RNA 59.9 14 0.00031 22.1 3.1 14 113-126 3-17 (46)
95 cd00084 HMG-box High Mobility 58.4 28 0.00061 21.6 4.5 45 27-83 11-55 (66)
96 cd01390 HMGB-UBF_HMG-box HMGB- 57.3 27 0.00058 21.8 4.3 42 30-83 14-55 (66)
97 TIGR02605 CxxC_CxxC_SSSS putat 56.9 13 0.00028 22.8 2.6 15 111-125 3-18 (52)
98 PF08271 TF_Zn_Ribbon: TFIIB z 55.7 13 0.00027 22.1 2.3 12 157-168 20-31 (43)
99 KOG3442 Uncharacterized conser 55.4 17 0.00036 27.2 3.3 34 12-45 61-94 (132)
100 PF05280 FlhC: Flagellar trans 54.5 6.3 0.00014 31.1 1.0 19 112-130 133-152 (175)
101 cd01389 MATA_HMG-box MATA_HMG- 54.4 33 0.00072 22.6 4.5 44 27-82 12-55 (77)
102 PF07709 SRR: Seven Residue Re 54.0 11 0.00023 17.1 1.4 13 59-71 2-14 (14)
103 COG5552 Uncharacterized conser 51.9 55 0.0012 22.4 5.1 32 11-42 4-35 (88)
104 PF12434 Malate_DH: Malate deh 50.6 19 0.00041 19.6 2.2 17 24-40 10-26 (28)
105 PF11331 DUF3133: Protein of u 50.5 12 0.00027 23.0 1.7 17 154-170 29-45 (46)
106 COG1579 Zn-ribbon protein, pos 48.4 8.1 0.00017 32.1 0.8 45 110-174 192-236 (239)
107 TIGR00515 accD acetyl-CoA carb 45.5 8.3 0.00018 32.8 0.5 44 112-180 25-77 (285)
108 PF13831 PHD_2: PHD-finger; PD 45.1 18 0.0004 20.8 1.8 13 155-167 3-15 (36)
109 COG0777 AccD Acetyl-CoA carbox 45.1 10 0.00022 32.3 0.9 46 112-182 27-81 (294)
110 PRK06266 transcription initiat 44.4 11 0.00024 29.7 1.0 16 112-127 116-132 (178)
111 KOG0527 HMG-box transcription 42.2 31 0.00068 30.0 3.5 43 28-82 74-116 (331)
112 PRK12722 transcriptional activ 42.2 12 0.00026 29.9 0.9 19 113-131 134-153 (187)
113 PF09064 Tme5_EGF_like: Thromb 42.1 14 0.00031 21.2 0.9 15 114-128 18-32 (34)
114 CHL00174 accD acetyl-CoA carbo 41.6 8.9 0.00019 32.8 0.1 45 112-181 37-90 (296)
115 TIGR00373 conserved hypothetic 41.6 15 0.00033 28.3 1.4 16 112-127 108-124 (158)
116 PRK12860 transcriptional activ 40.6 13 0.00029 29.7 0.9 99 20-131 33-153 (189)
117 PF00505 HMG_box: HMG (high mo 39.6 44 0.00095 21.1 3.2 43 28-82 12-54 (69)
118 PF10041 DUF2277: Uncharacteri 39.1 1.3E+02 0.0027 20.6 5.8 32 14-45 7-38 (78)
119 PRK05654 acetyl-CoA carboxylas 38.0 14 0.0003 31.5 0.7 45 112-181 26-79 (292)
120 smart00398 HMG high mobility g 37.4 80 0.0017 19.6 4.2 43 28-82 13-55 (70)
121 smart00531 TFIIE Transcription 35.6 36 0.00077 25.7 2.6 37 112-168 98-135 (147)
122 cd01780 PLC_epsilon_RA Ubiquit 32.0 59 0.0013 23.0 2.9 38 7-44 8-45 (93)
123 PF14670 FXa_inhibition: Coagu 31.2 31 0.00068 19.9 1.2 16 113-128 18-33 (36)
124 PF10955 DUF2757: Protein of u 30.3 25 0.00054 24.0 0.8 53 112-164 3-60 (76)
125 PHA00616 hypothetical protein 28.6 13 0.00028 22.6 -0.7 14 114-127 2-16 (44)
126 COG1281 Disulfide bond chapero 27.8 24 0.00052 30.1 0.5 20 112-131 265-285 (286)
127 PF08447 PAS_3: PAS fold; Int 25.5 16 0.00036 23.9 -0.8 30 9-42 5-35 (91)
128 PF09845 DUF2072: Zn-ribbon co 25.4 30 0.00066 26.0 0.6 10 115-124 3-13 (131)
129 PF15178 TOM_sub5: Mitochondri 24.8 1.3E+02 0.0027 18.7 3.1 23 13-35 2-24 (51)
130 PLN02569 threonine synthase 24.6 50 0.0011 30.2 1.9 19 156-175 65-83 (484)
131 COG3364 Zn-ribbon containing p 24.4 30 0.00065 25.0 0.4 8 115-122 4-12 (112)
132 COG5525 Bacteriophage tail ass 24.1 51 0.0011 31.0 1.9 47 109-168 223-271 (611)
133 COG2331 Uncharacterized protei 23.7 24 0.00052 24.2 -0.2 14 111-124 10-24 (82)
134 TIGR03180 UraD_2 OHCU decarbox 22.0 3.7E+02 0.008 20.6 6.5 27 19-45 30-67 (158)
135 COG0089 RplW Ribosomal protein 22.0 82 0.0018 22.3 2.2 21 15-35 25-45 (94)
136 COG0266 Nei Formamidopyrimidin 21.5 50 0.0011 28.0 1.2 15 115-131 247-262 (273)
137 COG5061 ERO1 Oxidoreductin, en 21.4 45 0.00097 29.4 0.9 16 155-170 310-325 (425)
138 KOG2324 Prolyl-tRNA synthetase 21.1 88 0.0019 27.9 2.7 16 54-69 174-189 (457)
139 PF07739 TipAS: TipAS antibiot 21.1 1.8E+02 0.0039 20.2 4.0 48 17-80 51-99 (118)
140 COG2879 Uncharacterized small 20.6 1.9E+02 0.0042 19.0 3.5 16 30-45 27-42 (65)
141 KOG3507 DNA-directed RNA polym 20.1 55 0.0012 21.3 0.9 11 156-166 37-47 (62)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.5e-25 Score=189.36 Aligned_cols=74 Identities=38% Similarity=0.596 Sum_probs=68.8
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 041019 8 IEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRALR 87 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~~ 87 (182)
...|||+||||+++||.+|||+|||+||++||||+++. ++.|.++|++|++||+||+||++|+.||+++....
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g-------~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~ 74 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG-------DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF 74 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence 57899999999999999999999999999999999995 27899999999999999999999999999987754
Q ss_pred c
Q 041019 88 Q 88 (182)
Q Consensus 88 ~ 88 (182)
.
T Consensus 75 ~ 75 (371)
T COG0484 75 K 75 (371)
T ss_pred c
Confidence 3
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.7e-24 Score=179.03 Aligned_cols=75 Identities=32% Similarity=0.553 Sum_probs=70.3
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRAL 86 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~ 86 (182)
...+|||+||||+++|+..|||+||||||+++|||||++ ++.|.+.|+.|+.||+|||||++|+.||..+...
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpd-------dp~A~e~F~~in~AYEVLsDpekRk~YD~~GEeg 85 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPD-------DPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEG 85 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhh
Confidence 457899999999999999999999999999999999998 4789999999999999999999999999999876
Q ss_pred hc
Q 041019 87 RQ 88 (182)
Q Consensus 87 ~~ 88 (182)
..
T Consensus 86 L~ 87 (336)
T KOG0713|consen 86 LK 87 (336)
T ss_pred hc
Confidence 54
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.4e-21 Score=164.88 Aligned_cols=72 Identities=42% Similarity=0.681 Sum_probs=66.9
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 041019 8 IEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRALR 87 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~~ 87 (182)
....+|+||||+++||.+|||+|||+|+++||||||+. +.++|++|.+||+|||||++|+.||+++.+..
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----------~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----------AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 35689999999999999999999999999999999986 67999999999999999999999999998866
Q ss_pred cc
Q 041019 88 QG 89 (182)
Q Consensus 88 ~~ 89 (182)
+.
T Consensus 72 ~~ 73 (337)
T KOG0712|consen 72 QG 73 (337)
T ss_pred cc
Confidence 54
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.7e-21 Score=167.39 Aligned_cols=70 Identities=34% Similarity=0.632 Sum_probs=64.5
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.+|||+|||+|+++||||+++. ++.+.++|++|++||+||+||.+|+.||+++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~-------~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG-------DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------ccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 4799999999999999999999999999999999874 246889999999999999999999999998754
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=5.3e-21 Score=166.54 Aligned_cols=69 Identities=30% Similarity=0.512 Sum_probs=64.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~--------~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS--------PDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------chHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 4799999999999999999999999999999999865 46889999999999999999999999998764
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.2e-20 Score=165.43 Aligned_cols=71 Identities=37% Similarity=0.546 Sum_probs=65.3
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
....|||+||||+++|+.++||+|||+|+++||||+++. ++.+.++|++|++||+||+||.+|+.||+++.
T Consensus 6 ~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 6 WVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG-------DPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred hcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 346899999999999999999999999999999999875 25688999999999999999999999999864
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.2e-20 Score=161.68 Aligned_cols=70 Identities=40% Similarity=0.681 Sum_probs=64.5
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.++||+|||+|+++||||+++. ++.+.++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG-------NKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------chHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 4799999999999999999999999999999999875 246889999999999999999999999998754
No 8
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.81 E-value=4.5e-20 Score=122.11 Aligned_cols=64 Identities=41% Similarity=0.693 Sum_probs=59.3
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHH
Q 041019 11 THYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYD 80 (182)
Q Consensus 11 d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD 80 (182)
|||+||||+++++.++||++|+++++++|||+++... ..+.+.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~------~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE------AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH------HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh------hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987721 357899999999999999999999998
No 9
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.7e-20 Score=153.61 Aligned_cols=71 Identities=31% Similarity=0.536 Sum_probs=66.4
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 041019 8 IEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRAL 86 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~ 86 (182)
...|||+||||+++|+..|||+||++|+++||||.+.. ..+.++|++|.+||++|+|+++|+.||..+...
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~--------~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD--------KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC--------cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 34499999999999999999999999999999999987 578999999999999999999999999998864
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.80 E-value=5e-20 Score=162.51 Aligned_cols=68 Identities=29% Similarity=0.566 Sum_probs=62.3
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
....|||+||||+++||.+|||+|||+|+++|||||+++ .++|++|++||+||+||.+|+.||+++..
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----------~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----------PEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----------HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 346899999999999999999999999999999999743 37899999999999999999999998754
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.5e-20 Score=159.31 Aligned_cols=69 Identities=30% Similarity=0.570 Sum_probs=63.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--------~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--------PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 4699999999999999999999999999999999864 46788999999999999999999999998654
No 12
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.3e-20 Score=158.78 Aligned_cols=83 Identities=34% Similarity=0.541 Sum_probs=74.2
Q ss_pred CCCCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 4 GERAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 4 ~~~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
........||+||||.++|+..+||++||+|||+|||||++.. -+.+.+.|+.|+.||+|||||..|+.||...
T Consensus 2 ~~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~------ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 2 NNPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR------IEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred CCchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc------HHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 4556788999999999999999999999999999999998763 2688999999999999999999999999999
Q ss_pred HHHhccccc
Q 041019 84 RALRQGMIA 92 (182)
Q Consensus 84 ~~~~~~~~~ 92 (182)
.+...+...
T Consensus 76 eqil~~~~s 84 (508)
T KOG0717|consen 76 EQILRGKNS 84 (508)
T ss_pred HHHhcCCCC
Confidence 887766444
No 13
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.1e-19 Score=158.53 Aligned_cols=69 Identities=29% Similarity=0.544 Sum_probs=64.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--------~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--------EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------ccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 5799999999999999999999999999999999864 46889999999999999999999999997654
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=153.31 Aligned_cols=69 Identities=28% Similarity=0.523 Sum_probs=64.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--------PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 4799999999999999999999999999999999864 46788999999999999999999999998754
No 15
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=158.52 Aligned_cols=69 Identities=38% Similarity=0.567 Sum_probs=64.0
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--------~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--------PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 4799999999999999999999999999999999875 46788999999999999999999999997654
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=157.66 Aligned_cols=71 Identities=32% Similarity=0.610 Sum_probs=64.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.+|||+|||+|+++||||+++.. +..+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN------RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc------hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 57999999999999999999999999999999998652 135788999999999999999999999997653
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.5e-19 Score=157.18 Aligned_cols=70 Identities=33% Similarity=0.566 Sum_probs=64.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.++||+|||+|+++||||+++. ++.+.++|++|++||++|+||.+|+.||+++..
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG-------NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 3699999999999999999999999999999999875 246788999999999999999999999998654
No 18
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.4e-19 Score=158.06 Aligned_cols=69 Identities=35% Similarity=0.612 Sum_probs=64.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--------~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--------PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--------ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 4799999999999999999999999999999999875 46788999999999999999999999998764
No 19
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.5e-19 Score=157.69 Aligned_cols=69 Identities=35% Similarity=0.637 Sum_probs=63.8
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--------PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--------hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 4699999999999999999999999999999999864 46788999999999999999999999998653
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.6e-19 Score=155.67 Aligned_cols=70 Identities=37% Similarity=0.652 Sum_probs=64.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++|+.++||+|||+|+++||||+++. ++.+.++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPG-------DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------chHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 5799999999999999999999999999999999875 246788999999999999999999999998754
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.8e-19 Score=156.54 Aligned_cols=66 Identities=35% Similarity=0.667 Sum_probs=62.0
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
..|||+||||+++||.++||+|||+|+++||||+++. ++.+.++|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKG-------DAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC-------chhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 5799999999999999999999999999999999875 24688999999999999999999999998
No 22
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.2e-19 Score=156.56 Aligned_cols=69 Identities=33% Similarity=0.584 Sum_probs=63.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~--------~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--------EGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 4799999999999999999999999999999999865 45789999999999999999999999998654
No 23
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.9e-19 Score=156.35 Aligned_cols=70 Identities=39% Similarity=0.618 Sum_probs=64.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.++||+|||+|+++||||+++. ++.+.++|++|++||+||+||.+|+.||+++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPG-------DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC-------chHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 3699999999999999999999999999999999875 246788999999999999999999999998754
No 24
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.3e-19 Score=156.58 Aligned_cols=67 Identities=30% Similarity=0.483 Sum_probs=63.1
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||+||+||.+|+.||+++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--------EEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--------HHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 699999999999999999999999999999999875 5688999999999999999999999998764
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.6e-19 Score=155.99 Aligned_cols=70 Identities=36% Similarity=0.625 Sum_probs=64.5
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.++||+|||+|+++||||+++. ++.+.++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPD-------NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCC-------ChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 4799999999999999999999999999999999875 246788999999999999999999999998754
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3e-19 Score=155.99 Aligned_cols=70 Identities=30% Similarity=0.610 Sum_probs=64.4
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++|+.++||+|||+|+++||||+++. ++.+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG-------NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 4799999999999999999999999999999999875 246889999999999999999999999998654
No 27
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.8e-19 Score=145.68 Aligned_cols=72 Identities=36% Similarity=0.579 Sum_probs=66.4
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 041019 8 IEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRAL 86 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~ 86 (182)
...++|+||||+++|+.++|||+||+|++++|||+++++ +++..+|++||+||.+|+||.+|..||.++...
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-------P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~ 100 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-------PEATDKFKEINTAYAILSDPTKRNVYDEYGELG 100 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-------chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence 456799999999999999999999999999999999883 678899999999999999999999999997653
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5e-19 Score=155.07 Aligned_cols=69 Identities=41% Similarity=0.622 Sum_probs=63.8
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
.|||+||||+++||.++||+|||+|+++||||++++ ++.+.++|++|++||++|+||.+|+.||+++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG-------DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------chHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 489999999999999999999999999999999875 256889999999999999999999999998754
No 29
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6e-19 Score=153.58 Aligned_cols=70 Identities=36% Similarity=0.678 Sum_probs=64.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++||.++||+|||+|+++||||+++. ++.+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG-------DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------cHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 4799999999999999999999999999999999875 245788999999999999999999999997654
No 30
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.9e-19 Score=147.84 Aligned_cols=72 Identities=36% Similarity=0.653 Sum_probs=67.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRALR 87 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~~ 87 (182)
..|||.||||+++++..+|++|||+.+++||||||++ +|.|.+.|+.|.+||+||+|+..|+.||..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~-------dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPG-------DPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-------ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 6799999999999999999999999999999999998 46799999999999999999999999999988643
No 31
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.7e-19 Score=154.58 Aligned_cols=70 Identities=37% Similarity=0.627 Sum_probs=64.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++|+.++||+|||+|+++||||+++. ++.+.++|++|++||++|+||.+|+.||+++..
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~-------~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD-------NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC-------chHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 3699999999999999999999999999999999875 246788999999999999999999999998764
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.75 E-value=2.1e-18 Score=146.68 Aligned_cols=67 Identities=34% Similarity=0.640 Sum_probs=62.5
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||..+.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--------~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--------PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 699999999999999999999999999999999764 4678999999999999999999999999763
No 33
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.74 E-value=2e-18 Score=149.46 Aligned_cols=67 Identities=40% Similarity=0.670 Sum_probs=62.4
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 11 THYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 11 d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--------KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--------ccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 79999999999999999999999999999999863 45788999999999999999999999997754
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.1e-18 Score=150.32 Aligned_cols=68 Identities=26% Similarity=0.519 Sum_probs=63.0
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
.|||+||||+++||.++||+|||+|+++||||+++. ..+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--------~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--------KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 699999999999999999999999999999999764 45788999999999999999999999997653
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.3e-18 Score=149.69 Aligned_cols=70 Identities=33% Similarity=0.622 Sum_probs=64.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++|+.+|||+|||+|+++||||+++. ++.+.++|++|++||++|+||.+|+.||+++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-------~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPG-------DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4799999999999999999999999999999999875 246889999999999999999999999998754
No 36
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4.2e-18 Score=148.51 Aligned_cols=69 Identities=36% Similarity=0.603 Sum_probs=63.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|+.|++||++|+||.+|+.||.++..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--------~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--------PGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--------cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 4699999999999999999999999999999999865 45788999999999999999999999997653
No 37
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.3e-18 Score=148.67 Aligned_cols=69 Identities=30% Similarity=0.557 Sum_probs=63.1
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.|||+||||+++|+.+|||+|||+|+++||||+++.. ...+.++|++|++||++|+||.+|+.||+++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN------KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 6999999999999999999999999999999998651 13688999999999999999999999999764
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.7e-18 Score=148.65 Aligned_cols=67 Identities=33% Similarity=0.614 Sum_probs=62.7
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.|||+||||+++|+.++||+|||+|+++||||+++. ..+.++|+.|++||++|+||.+|+.||+++.
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~--------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--------KGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--------hhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 489999999999999999999999999999999875 5678999999999999999999999999764
No 39
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=99.73 E-value=2.8e-18 Score=110.72 Aligned_cols=55 Identities=38% Similarity=0.808 Sum_probs=45.2
Q ss_pred cccCcccccccCCCceeeEEEecccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEEEEe
Q 041019 94 EDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLLVN 171 (182)
Q Consensus 94 ~~~~l~d~~~~~~~~~~~~~~~CrCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V~~~ 171 (182)
++++|++|.++++.. .|+|+||||+.|.+++++|++ ++++|+|++|||||+|.|+
T Consensus 1 dev~l~d~~~~~~~~--~~~y~CRCG~~f~i~e~~l~~---------------------~~~iv~C~sCSL~I~V~~~ 55 (55)
T PF05207_consen 1 DEVSLDDMEFDEEEG--VYSYPCRCGGEFEISEEDLEE---------------------GEVIVQCDSCSLWIRVNYD 55 (55)
T ss_dssp -EEETTTSEEETTTT--EEEEEETTSSEEEEEHHHHHC---------------------T--EEEETTTTEEEEEE--
T ss_pred CeEEhhhceecCCCC--EEEEcCCCCCEEEEcchhccC---------------------cCEEEECCCCccEEEEEeC
Confidence 367899999977665 599999999999999999987 2468999999999999985
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.9e-18 Score=148.95 Aligned_cols=76 Identities=33% Similarity=0.548 Sum_probs=68.5
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRAL 86 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~ 86 (182)
..+.+||.+|+|+++||.+|||+|||++++.|||||..++ ..+..|++.|+.|.+||+||+||.+|+.||..+.+.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dp----d~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDP----DQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCCh----hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 3456999999999999999999999999999999998862 335678999999999999999999999999998764
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.72 E-value=6.6e-18 Score=158.24 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=65.9
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRAL 86 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~ 86 (182)
....+||+||||+++||..+||+|||+||++|||||++. ..+..+|+.|++||+||+||.+|+.||.++...
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~--------~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG--------NEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------chHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 457899999999999999999999999999999999876 357789999999999999999999999987653
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.72 E-value=1.2e-17 Score=108.70 Aligned_cols=59 Identities=39% Similarity=0.710 Sum_probs=54.0
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCch
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSR 74 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~ 74 (182)
.|||+||||+++++.++||++|+++++.+|||+++.. .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999998752 2678899999999999999985
No 43
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.2e-17 Score=108.43 Aligned_cols=64 Identities=27% Similarity=0.621 Sum_probs=55.9
Q ss_pred cccccCcccccccCCCceeeEEEecccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEEEEe
Q 041019 92 AAEDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLLVN 171 (182)
Q Consensus 92 ~~~~~~l~d~~~~~~~~~~~~~~~CrCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V~~~ 171 (182)
..+.+.++||+++++++ .|+|||+||+.|.|+.++|+. ++.+.+|++|||.|+|+|+
T Consensus 3 ~ydeVeiedfe~~~e~~--~y~yPCpCGDrf~It~edL~~---------------------ge~Va~CpsCSL~I~ViYd 59 (67)
T KOG2923|consen 3 FYDEVEIEDFEFDEENQ--TYYYPCPCGDRFQITLEDLEN---------------------GEDVARCPSCSLIIRVIYD 59 (67)
T ss_pred ccceEEeecceeccCCC--eEEcCCCCCCeeeecHHHHhC---------------------CCeeecCCCceEEEEEEeC
Confidence 45788999999987765 799999999999999999986 2457899999999999999
Q ss_pred ccccccc
Q 041019 172 ADIEVTA 178 (182)
Q Consensus 172 ~~~~~~~ 178 (182)
++.+..+
T Consensus 60 ~edf~~~ 66 (67)
T KOG2923|consen 60 KEDFAEY 66 (67)
T ss_pred HHHhhcc
Confidence 9988765
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.4e-17 Score=133.15 Aligned_cols=75 Identities=36% Similarity=0.581 Sum_probs=66.6
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 6 RAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 6 ~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
.....|+|+||||.++|+..+||+||++|++++|||+++. .....+...|++|+.||.||+|.++|+.||..+..
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~e-----ed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHE-----EDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchh-----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 3566799999999999999999999999999999999863 22467889999999999999999999999997643
No 45
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.69 E-value=7.1e-17 Score=103.23 Aligned_cols=55 Identities=45% Similarity=0.758 Sum_probs=50.8
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcC
Q 041019 11 THYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSN 72 (182)
Q Consensus 11 d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d 72 (182)
|||+||||+++++.++||++|+++++++|||+.+.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-------~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-------PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999998751 4678899999999999986
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.63 E-value=3.9e-16 Score=143.62 Aligned_cols=68 Identities=29% Similarity=0.539 Sum_probs=63.3
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
.|||+||||+++|+.++||+|||+|++++|||+++. +.+..+|++|++||++|+||.+|+.||.++..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--------~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--------PDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 699999999999999999999999999999999875 46778999999999999999999999998754
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.9e-16 Score=123.94 Aligned_cols=72 Identities=28% Similarity=0.452 Sum_probs=65.1
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
...-|||+||||++++|..|||+|||+|++++||||++.. ...++.|..|.+||..|+|+..|..|...+..
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-------~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-------EGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-------chhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 4567999999999999999999999999999999998762 35677889999999999999999999998764
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=8.4e-16 Score=121.58 Aligned_cols=70 Identities=37% Similarity=0.569 Sum_probs=64.0
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCc-hHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDH-ESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~-~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
....+||+||||+++|+..+|++|||++++++|||+++.. + .+.+.|..|++||++|+|+.+|..||..+
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~-------~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD-------PKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 3467999999999999999999999999999999999872 2 37899999999999999999999999864
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.61 E-value=1.2e-15 Score=119.93 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=61.3
Q ss_pred cCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 10 ETHYDILSVRVD--ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 10 ~d~Y~iLgv~~~--as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.|||+||||++. ++..+|+++||++++++|||+..+.+. .....+.+.|..|++||++|+||.+|+.|+-.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~--~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASE--RERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcH--HHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999996 678999999999999999999875321 1122456789999999999999999999997765
No 50
>PHA03102 Small T antigen; Reviewed
Probab=99.61 E-value=3.8e-16 Score=120.27 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=59.3
Q ss_pred cCccccccCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 10 ETHYDILSVRVDA--SYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 10 ~d~Y~iLgv~~~a--s~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..+|+||||+++| |.++||+|||++++++||||+++ .++|++|++||++|+|+..|..||..+..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-----------~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-----------EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-----------hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 4679999999999 99999999999999999999643 46899999999999999999999998654
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.60 E-value=1.4e-15 Score=118.96 Aligned_cols=71 Identities=18% Similarity=0.314 Sum_probs=59.8
Q ss_pred cCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 10 ETHYDILSVRVD--ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 10 ~d~Y~iLgv~~~--as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.|||+||||++. ++..+|+++||++++++|||+..+. .....+.+.+..|++||++|+||.+|+.|+..+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~----~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTL----QEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999997 6899999999999999999997641 1112344568899999999999999999988774
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.58 E-value=4.2e-15 Score=116.90 Aligned_cols=75 Identities=19% Similarity=0.355 Sum_probs=63.9
Q ss_pred CccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 8 IEETHYDILSVRVD--ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~--as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
...|||++|||++. .+..+|+++||++++++|||+..+.+ ......+.+.+..||+||++|+||.+|+.|+..+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~--~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAP--EREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCc--HHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 57899999999998 46799999999999999999986632 11223466789999999999999999999999875
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.57 E-value=5.5e-15 Score=116.63 Aligned_cols=75 Identities=17% Similarity=0.385 Sum_probs=61.9
Q ss_pred CccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 8 IEETHYDILSVRVD--ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~--as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
...|||+||||++. ++..+|+++||++++++|||+.+..+. ..+..+.+.+..||+||++|+||.+|+.|...+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~--~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGD--AEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCH--HHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 45899999999996 578999999999999999999875321 1112345567899999999999999999998775
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4e-15 Score=129.99 Aligned_cols=72 Identities=29% Similarity=0.420 Sum_probs=67.6
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRAL 86 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~ 86 (182)
...+|+|.+|||+++++.++||+.||++|...||||+.. +.|.+.|+.|+.||++|+|+.+|+.||..+...
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~--------~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI--------PRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC--------hhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 347899999999999999999999999999999999987 789999999999999999999999999987753
No 55
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=6.4e-15 Score=94.48 Aligned_cols=65 Identities=28% Similarity=0.523 Sum_probs=56.6
Q ss_pred cccccCcccccccCCCceeeEEEecccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEEEEe
Q 041019 92 AAEDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLLVN 171 (182)
Q Consensus 92 ~~~~~~l~d~~~~~~~~~~~~~~~CrCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V~~~ 171 (182)
..+++.+++|.++..+. .|+|||.||+.|.|+-++|.. ++++..|++|||.|.|+|+
T Consensus 3 fYDEieiedftf~~e~~--~ftyPCPCGDRFeIsLeDl~~---------------------GE~VArCPSCSLiv~vvyd 59 (67)
T COG5216 3 FYDEIEIEDFTFSREEK--TFTYPCPCGDRFEISLEDLRN---------------------GEVVARCPSCSLIVCVVYD 59 (67)
T ss_pred ccceeEeeeeEEcCCCc--eEEecCCCCCEeEEEHHHhhC---------------------CceEEEcCCceEEEEEEec
Confidence 45788999999977664 799999999999999999875 3567899999999999999
Q ss_pred cccccccC
Q 041019 172 ADIEVTAD 179 (182)
Q Consensus 172 ~~~~~~~~ 179 (182)
.|++.+|+
T Consensus 60 ~edl~ey~ 67 (67)
T COG5216 60 AEDLEEYL 67 (67)
T ss_pred HHHHhhhC
Confidence 99998874
No 56
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.53 E-value=4.2e-15 Score=126.91 Aligned_cols=73 Identities=29% Similarity=0.557 Sum_probs=67.0
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 6 RAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 6 ~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
.+..+|||+||||.++|+..||.+|||+++.+||||-.++ +.++..++.+|.-|..|-+||+||++|++||..
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd----EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD----EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC----HHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 3678999999999999999999999999999999999887 344567899999999999999999999999985
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.47 E-value=4.9e-14 Score=117.91 Aligned_cols=65 Identities=25% Similarity=0.402 Sum_probs=56.5
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcC
Q 041019 8 IEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSN 72 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d 72 (182)
...++|+||||++++|.++||++||+|+++||||++.+.+.++...+.+.++|++|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 44799999999999999999999999999999999876544444446788999999999999985
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.8e-14 Score=116.12 Aligned_cols=71 Identities=35% Similarity=0.550 Sum_probs=65.6
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
....|.|+||||++.++..+|.+|||+|++++|||++.+ +++.+.|+.|.+||++|.|...|..||-.+..
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~--------~e~k~~F~~iAtayeilkd~e~rt~ydyaldh 100 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD--------PESKKLFVKIATAYEILKDNETRTQYDYALDH 100 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC--------chhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence 467899999999999999999999999999999999988 55668999999999999999999999987754
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.45 E-value=1.3e-13 Score=101.46 Aligned_cols=55 Identities=29% Similarity=0.332 Sum_probs=48.6
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhc
Q 041019 6 RAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71 (182)
Q Consensus 6 ~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~ 71 (182)
.....++|+||||++++|.++||++||+|++++|||+..+ ...|.+|++||++|.
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs-----------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS-----------TYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------HHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999999999998533 467899999999995
No 60
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.6e-13 Score=119.15 Aligned_cols=72 Identities=33% Similarity=0.536 Sum_probs=66.3
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 6 RAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 6 ~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
++...+||.||||.++++..+||+|||++++.+|||++..+ +.+++.+|++|-+||.+|+||.+|..||..-
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags------q~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS------QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch------hHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 35688999999999999999999999999999999999873 3678899999999999999999999999864
No 61
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3e-13 Score=111.73 Aligned_cols=70 Identities=33% Similarity=0.591 Sum_probs=62.7
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
..|+|.||+|.++|+..+|++||++++++||||+++.. ...+..+|++|.+||++|+||.+|..||....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~------~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP------KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc------hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46899999999999999999999999999999997662 12455589999999999999999999999986
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.31 E-value=2.8e-12 Score=100.90 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=61.9
Q ss_pred cCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 10 ETHYDILSVRVD--ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 10 ~d~Y~iLgv~~~--as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.|||++|||++. .+...|+++|+++.+++|||+....+ ...+..+.+....||+||.+|+||.+|+.|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~--~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSS--AQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCC--HHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999998 68999999999999999999987733 11223455677899999999999999999988776
No 63
>PHA02624 large T antigen; Provisional
Probab=99.31 E-value=1.9e-12 Score=118.01 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=56.2
Q ss_pred CccCccccccCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHH
Q 041019 8 IEETHYDILSVRVDA--SYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVY 79 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~a--s~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~Y 79 (182)
...++|+||||+++| +.++||+|||++++++||||.++ .+.|++|++||++|+|+.+|..|
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd-----------eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD-----------EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-----------HHHHHHHHHHHHHHhcHHHhhhc
Confidence 356899999999999 99999999999999999999543 57899999999999999999998
No 64
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.22 E-value=8.4e-12 Score=109.32 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=66.4
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 8 IEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..-|+|+|||+..+++..+||++||+|+.++||||.+. .....++.-++.+++|++||..|+|...|..|-.++..
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~--mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP--MVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCC--CChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 45699999999999999999999999999999999876 23334466788999999999999999999999887654
No 65
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.2e-11 Score=95.85 Aligned_cols=71 Identities=23% Similarity=0.386 Sum_probs=62.9
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
..+.|+|+||.|.|..+.++||+.||+|++..|||||+.+. +.|...|..|.+||..|-|+..|..-+...
T Consensus 50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~------~rAqkAFdivkKA~k~l~n~~~rkr~~~~y 120 (250)
T KOG1150|consen 50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDA------ERAQKAFDIVKKAYKLLENDKIRKRCLDVY 120 (250)
T ss_pred ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccH------HHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999843 678899999999999999999777655443
No 66
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.17 E-value=7.6e-11 Score=91.49 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 22 ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 22 as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.+..+|+++||++++++|||+.++.+. ..+..+...+..|++||++|+||.+|+.|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~--~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSA--QEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCCh--hhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 467899999999999999999765321 1223467889999999999999999999999886
No 67
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.8e-10 Score=94.41 Aligned_cols=73 Identities=26% Similarity=0.370 Sum_probs=62.2
Q ss_pred CCCccCccccccCCC---CCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 6 RAIEETHYDILSVRV---DASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 6 ~~~~~d~Y~iLgv~~---~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
+....|+|.+|||+. .+.+.+|.++.++.+.+||||+....+ +......|+.|+.||+||+|+.+|.+||..
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g-----~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG-----NKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC-----CCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 356789999999996 478999999999999999999984422 134578899999999999999999999985
Q ss_pred H
Q 041019 83 L 83 (182)
Q Consensus 83 l 83 (182)
-
T Consensus 114 d 114 (379)
T COG5269 114 D 114 (379)
T ss_pred c
Confidence 4
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.6e-08 Score=78.86 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=50.1
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHH-HhcC
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWE-ILSN 72 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~-vL~d 72 (182)
-..+|.||||..+++.+++|.||..|++++|||.... +...+.|.+|.+||. ||+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~--------~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE--------EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc--------cccHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998776 566788999999998 7764
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.1e-07 Score=87.00 Aligned_cols=54 Identities=35% Similarity=0.511 Sum_probs=46.5
Q ss_pred CccCccccccCCCC----CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhc
Q 041019 8 IEETHYDILSVRVD----ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~----as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~ 71 (182)
...+-|+||.|+-+ ...+.||++|+||+.+||||||+. ..++|..+++||+.|.
T Consensus 1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE----------GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE----------GREMFERVNKAYELLS 1336 (2235)
T ss_pred chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch----------HHHHHHHHHHHHHHHH
Confidence 34567999999854 356889999999999999999875 5789999999999998
No 70
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.3e-06 Score=63.02 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=46.8
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCc
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNS 73 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp 73 (182)
+..+.--.||||+++++.+.||.|+|+..+..|||+..+ .-.-.+|++|+++|...
T Consensus 53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-----------PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-----------PYLASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-----------HHHHHHHHHHHHHHhcc
Confidence 344445569999999999999999999999999999876 34456899999999754
No 71
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.3e-05 Score=61.73 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=61.2
Q ss_pred CCCCccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 5 ERAIEETHYDILSVRVD--ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 5 ~~~~~~d~Y~iLgv~~~--as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
......+||.++|.... ..+..++..|.-..++.|||+......... ..+.+....|++||.+|.||-+|+.|=..
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~--d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDT--DQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34567899999987654 466777779999999999999654322211 25677789999999999999999999877
Q ss_pred HHH
Q 041019 83 LRA 85 (182)
Q Consensus 83 l~~ 85 (182)
+..
T Consensus 81 l~g 83 (168)
T KOG3192|consen 81 LKG 83 (168)
T ss_pred HhC
Confidence 654
No 72
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.63 E-value=4.4e-05 Score=68.48 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=41.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhc
Q 041019 17 SVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71 (182)
Q Consensus 17 gv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~ 71 (182)
++..-.+.+.||++|||++|..||||.+..+.....+--+.+.|..+++||....
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444568999999999999999999998865333333356677888888887654
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=4e-05 Score=60.29 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=52.3
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHh
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEIL 70 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL 70 (182)
.+.|.+||+.+.++..+|+++|+++....|||+....+.+...-..+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999998776555444456778889999999753
No 74
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00065 Score=53.44 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=55.3
Q ss_pred CccccccCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 11 THYDILSVRVDA--SYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 11 d~Y~iLgv~~~a--s~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
+++..+|.++.+ ..+.++..|+.+.+.+|||+....+. .....+...+..++.||.+|.+|-.|..|=..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~--~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASE--AEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccch--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 456667777665 35669999999999999999876321 1112345678999999999999999999987765
No 75
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.95 E-value=0.018 Score=43.21 Aligned_cols=51 Identities=29% Similarity=0.233 Sum_probs=36.9
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcC
Q 041019 11 THYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSN 72 (182)
Q Consensus 11 d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d 72 (182)
.-..||||++..+.++|.+.|.+|-...+|++.++ ...=..|..|.+.|..
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS-----------fYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGS-----------FYLQSKVFRAKERLEQ 109 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC-----------HHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999998765 3333578888888863
No 76
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=93.99 E-value=0.062 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.542 Sum_probs=27.7
Q ss_pred Eec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE
Q 041019 114 YKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL 168 (182)
Q Consensus 114 ~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V 168 (182)
..| +|+..|.|..+.+...+ ..+.|..|...+.|
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~---------------------~~v~C~~C~~~~~~ 37 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANG---------------------GKVRCGKCGHVWYA 37 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCC---------------------CEEECCCCCCEEEe
Confidence 568 99999999998887532 14899999998876
No 77
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=90.49 E-value=0.21 Score=29.05 Aligned_cols=32 Identities=22% Similarity=0.582 Sum_probs=25.5
Q ss_pred Eec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceE
Q 041019 114 YKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHV 166 (182)
Q Consensus 114 ~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i 166 (182)
..| +|+..|.|.++.+-+.| ..+.|..|+...
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g---------------------~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKG---------------------RKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCC---------------------cEEECCCCCCEe
Confidence 358 89999999999887643 358999998653
No 78
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=0.49 Score=40.63 Aligned_cols=60 Identities=32% Similarity=0.367 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 21 DASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 21 ~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
.++..+|+.+|+..++..||++... .........+.|+.|.+||.+|.+...|...|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSF---YEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHH---HHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 3577889999999999999998741 00001245677999999999999977767777765
No 79
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=89.27 E-value=0.59 Score=29.22 Aligned_cols=34 Identities=24% Similarity=0.536 Sum_probs=23.5
Q ss_pred eEEEec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEEEE
Q 041019 111 DLFYKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLLV 170 (182)
Q Consensus 111 ~~~~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V~~ 170 (182)
...|.| +||..|.+ +.. ...+.|+-|+..|-|.-
T Consensus 4 ~~~Y~C~~Cg~~~~~----~~~----------------------~~~irCp~Cg~rIl~K~ 38 (49)
T COG1996 4 MMEYKCARCGREVEL----DQE----------------------TRGIRCPYCGSRILVKE 38 (49)
T ss_pred eEEEEhhhcCCeeeh----hhc----------------------cCceeCCCCCcEEEEec
Confidence 468899 99998722 111 01389999999887653
No 80
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=88.11 E-value=0.52 Score=27.48 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=26.5
Q ss_pred Eec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE
Q 041019 114 YKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL 168 (182)
Q Consensus 114 ~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V 168 (182)
..| .|+..|.|+++.|...| ..|.|..|.....|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~---------------------~~vrC~~C~~~f~v 37 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGG---------------------RKVRCPKCGHVFRV 37 (37)
T ss_pred EECCCCCceEEcCHHHcccCC---------------------cEEECCCCCcEeeC
Confidence 358 89999999999887633 25899999876543
No 81
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=87.39 E-value=1.2 Score=35.72 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhc
Q 041019 19 RVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71 (182)
Q Consensus 19 ~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~ 71 (182)
+++||.+||.+|+.++..+|--|. +.-.+|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~---------------~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE---------------KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHHH
Confidence 578999999999999999994442 34567899998544
No 82
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=86.28 E-value=1 Score=28.77 Aligned_cols=32 Identities=22% Similarity=0.818 Sum_probs=24.5
Q ss_pred Eec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEEE
Q 041019 114 YKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLL 169 (182)
Q Consensus 114 ~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V~ 169 (182)
..| .||..+.+....++. +|.|+.|...+.|.
T Consensus 3 ~~CP~CG~~iev~~~~~Ge------------------------iV~Cp~CGaeleVv 35 (54)
T TIGR01206 3 FECPDCGAEIELENPELGE------------------------LVICDECGAELEVV 35 (54)
T ss_pred cCCCCCCCEEecCCCccCC------------------------EEeCCCCCCEEEEE
Confidence 358 899988776544432 68999999999985
No 83
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=85.77 E-value=0.93 Score=30.14 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=10.4
Q ss_pred ceEEEeCCCccceEEE
Q 041019 153 ASVILPCGSCSLHVRL 168 (182)
Q Consensus 153 ~~~~v~C~~CSl~i~V 168 (182)
+.|+|+|++|.-+-.|
T Consensus 26 GvViv~C~gC~~~HlI 41 (66)
T PF05180_consen 26 GVVIVQCPGCKNRHLI 41 (66)
T ss_dssp SEEEEE-TTS--EEES
T ss_pred CeEEEECCCCcceeee
Confidence 5789999999987654
No 84
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=85.13 E-value=1.4 Score=32.34 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhc
Q 041019 20 VDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILS 71 (182)
Q Consensus 20 ~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~ 71 (182)
+..+..++|.|.|..-++.|||....... .+...+.-++.++.--+.|.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~---~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPE---EKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChH---HHHhhHHHHHHHHHHHHHHh
Confidence 34577899999999999999998776321 11223344555554444444
No 85
>PF13446 RPT: A repeated domain in UCH-protein
Probab=82.81 E-value=1.6 Score=28.04 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=24.4
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAIL 36 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~ 36 (182)
.+-|++|||+++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999999877
No 86
>KOG3277 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.08 E-value=2.2 Score=33.05 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=14.7
Q ss_pred CceEEEeCCCccceEEEE
Q 041019 152 PASVILPCGSCSLHVRLL 169 (182)
Q Consensus 152 ~~~~~v~C~~CSl~i~V~ 169 (182)
.|.|+|+|.+|..+-.|.
T Consensus 100 ~GvVivqC~gC~~~Hlia 117 (165)
T KOG3277|consen 100 KGVVIVQCPGCKNHHLIA 117 (165)
T ss_pred CceEEEECCCCccceeeh
Confidence 468999999999877663
No 87
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=79.02 E-value=2.4 Score=25.77 Aligned_cols=29 Identities=28% Similarity=0.693 Sum_probs=20.9
Q ss_pred EEec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE
Q 041019 113 FYKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL 168 (182)
Q Consensus 113 ~~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V 168 (182)
.|.| .||..|.+.. . ..+.|+.|...|-.
T Consensus 2 ~Y~C~~Cg~~~~~~~--~-------------------------~~irC~~CG~rIly 31 (44)
T smart00659 2 IYICGECGRENEIKS--K-------------------------DVVRCRECGYRILY 31 (44)
T ss_pred EEECCCCCCEeecCC--C-------------------------CceECCCCCceEEE
Confidence 5789 9999777641 1 13899999987753
No 88
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=73.98 E-value=1.5 Score=23.27 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=12.2
Q ss_pred EEecccCCceeeccc
Q 041019 113 FYKCRCGDCFSIDSM 127 (182)
Q Consensus 113 ~~~CrCg~~f~~~~~ 127 (182)
+|.|.|..+|.+..+
T Consensus 1 sy~C~C~~Gy~l~~d 15 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPD 15 (24)
T ss_pred CEEeeCCCCCcCCCC
Confidence 377999999998663
No 89
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=73.39 E-value=3 Score=24.16 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=12.4
Q ss_pred eEEEec-ccCCceeecc
Q 041019 111 DLFYKC-RCGDCFSIDS 126 (182)
Q Consensus 111 ~~~~~C-rCg~~f~~~~ 126 (182)
.|.|.| .||..|.+..
T Consensus 3 ~Y~y~C~~Cg~~fe~~~ 19 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQ 19 (41)
T ss_pred CEEEEcCCCCCEEEEEE
Confidence 367889 8999887754
No 90
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=71.89 E-value=2.4 Score=24.02 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=8.1
Q ss_pred EeCCCccceEE
Q 041019 157 LPCGSCSLHVR 167 (182)
Q Consensus 157 v~C~~CSl~i~ 167 (182)
|.|..|...|-
T Consensus 18 irC~~CG~RIl 28 (32)
T PF03604_consen 18 IRCPECGHRIL 28 (32)
T ss_dssp SSBSSSS-SEE
T ss_pred EECCcCCCeEE
Confidence 78999988763
No 91
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=67.11 E-value=7.7 Score=23.06 Aligned_cols=16 Identities=31% Similarity=0.764 Sum_probs=12.4
Q ss_pred eEEEec-ccCCceeecc
Q 041019 111 DLFYKC-RCGDCFSIDS 126 (182)
Q Consensus 111 ~~~~~C-rCg~~f~~~~ 126 (182)
.|.|.| .||..|.+..
T Consensus 3 ~Yey~C~~Cg~~fe~~~ 19 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ 19 (42)
T ss_pred CEEEEeCCCCCEEEEEE
Confidence 478889 7999887744
No 92
>KOG1779 consensus 40s ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=60.82 E-value=13 Score=25.60 Aligned_cols=36 Identities=28% Similarity=0.649 Sum_probs=25.8
Q ss_pred eEEEecccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE
Q 041019 111 DLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL 168 (182)
Q Consensus 111 ~~~~~CrCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V 168 (182)
.|+..-+|+++|.|+-- .++++.+|-|.+|+..+-.
T Consensus 30 syFm~VkC~gc~~iT~v----------------------fSHaqtvVvc~~c~~il~~ 65 (84)
T KOG1779|consen 30 SYFMDVKCPGCFKITTV----------------------FSHAQTVVVCEGCSTILCQ 65 (84)
T ss_pred ceEEEEEcCCceEEEEE----------------------eecCceEEEcCCCceEEEE
Confidence 36777899999988641 1234567899999988754
No 93
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=60.46 E-value=23 Score=23.14 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
.+..|...+.-||+.. ..+..+.|.+.|..|++..+...++...
T Consensus 13 ~~~~r~~~~~~~p~~~------------~~eisk~l~~~Wk~ls~~eK~~y~~~a~ 56 (72)
T cd01388 13 SKRHRRKVLQEYPLKE------------NRAISKILGDRWKALSNEEKQPYYEEAK 56 (72)
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667777899852 2466789999999999888766655543
No 94
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=59.92 E-value=14 Score=22.13 Aligned_cols=14 Identities=50% Similarity=1.096 Sum_probs=10.7
Q ss_pred EEec-ccCCceeecc
Q 041019 113 FYKC-RCGDCFSIDS 126 (182)
Q Consensus 113 ~~~C-rCg~~f~~~~ 126 (182)
.|.| .||..+.+.+
T Consensus 3 ~y~C~~CG~~~~~~~ 17 (46)
T PRK00398 3 EYKCARCGREVELDE 17 (46)
T ss_pred EEECCCCCCEEEECC
Confidence 5778 8999887754
No 95
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=58.37 E-value=28 Score=21.55 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 27 IRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 27 Ik~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
-.+.++..++.-||+.. ..+....|.+.|..|++..+....+..-
T Consensus 11 f~~~~~~~~~~~~~~~~------------~~~i~~~~~~~W~~l~~~~k~~y~~~a~ 55 (66)
T cd00084 11 FSQEHRAEVKAENPGLS------------VGEISKILGEMWKSLSEEEKKKYEEKAE 55 (66)
T ss_pred HHHHHHHHHHHHCcCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35566777888898842 3467889999999999876555555443
No 96
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=57.28 E-value=27 Score=21.84 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=29.5
Q ss_pred HHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 30 GYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 30 aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
..|..++.-||+.. ..+..+.|.+.|..|++..+....+...
T Consensus 14 ~~r~~~~~~~p~~~------------~~~i~~~~~~~W~~ls~~eK~~y~~~a~ 55 (66)
T cd01390 14 EQRPKLKKENPDAS------------VTEVTKILGEKWKELSEEEKKKYEEKAE 55 (66)
T ss_pred HHHHHHHHHCcCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556667788842 3577889999999999876655555543
No 97
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=56.91 E-value=13 Score=22.76 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=12.0
Q ss_pred eEEEec-ccCCceeec
Q 041019 111 DLFYKC-RCGDCFSID 125 (182)
Q Consensus 111 ~~~~~C-rCg~~f~~~ 125 (182)
.|.|.| .||..|.+.
T Consensus 3 ~Yey~C~~Cg~~fe~~ 18 (52)
T TIGR02605 3 IYEYRCTACGHRFEVL 18 (52)
T ss_pred CEEEEeCCCCCEeEEE
Confidence 478889 799988874
No 98
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=55.69 E-value=13 Score=22.08 Aligned_cols=12 Identities=33% Similarity=0.730 Sum_probs=7.9
Q ss_pred EeCCCccceEEE
Q 041019 157 LPCGSCSLHVRL 168 (182)
Q Consensus 157 v~C~~CSl~i~V 168 (182)
+-|..|-++|.-
T Consensus 20 ~vC~~CG~Vl~e 31 (43)
T PF08271_consen 20 LVCPNCGLVLEE 31 (43)
T ss_dssp EEETTT-BBEE-
T ss_pred EECCCCCCEeec
Confidence 689999777653
No 99
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.39 E-value=17 Score=27.23 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=29.6
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 041019 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKLQN 45 (182)
Q Consensus 12 ~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~ 45 (182)
--+||+|++..+.++|.+.|..|-....+.|.++
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 3579999999999999999999999888877654
No 100
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=54.50 E-value=6.3 Score=31.10 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=10.2
Q ss_pred EEEec-ccCCceeecccccc
Q 041019 112 LFYKC-RCGDCFSIDSMELD 130 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~~l~ 130 (182)
-..+| +||+.|..+..++.
T Consensus 133 ~l~~C~~C~~~fv~~~~~~~ 152 (175)
T PF05280_consen 133 QLAPCRRCGGHFVTHAHDPR 152 (175)
T ss_dssp EEEE-TTT--EEEEESS--S
T ss_pred cccCCCCCCCCeECcCCCCC
Confidence 35568 79999998876543
No 101
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=54.36 E-value=33 Score=22.61 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 27 IRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 27 Ik~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
-.+.++..++.-||+.. ..+..+.|.+.|..|++..+....+..
T Consensus 12 f~~~~r~~~~~~~p~~~------------~~eisk~~g~~Wk~ls~eeK~~y~~~A 55 (77)
T cd01389 12 YRQDKHAQLKTENPGLT------------NNEISRIIGRMWRSESPEVKAYYKELA 55 (77)
T ss_pred HHHHHHHHHHHHCCCCC------------HHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 45677888888899863 246778999999999977665555543
No 102
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=54.00 E-value=11 Score=17.12 Aligned_cols=13 Identities=54% Similarity=0.774 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhc
Q 041019 59 RFLKVQKAWEILS 71 (182)
Q Consensus 59 ~f~~I~~Ay~vL~ 71 (182)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3677888888764
No 103
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=51.87 E-value=55 Score=22.35 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=24.7
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHhhCCCC
Q 041019 11 THYDILSVRVDASYEEIRTGYRSAILNYHPDK 42 (182)
Q Consensus 11 d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk 42 (182)
|--+++|+.|-|+..||+.|-++.+++..--.
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT 35 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTT 35 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 34468899999999999999887777664433
No 104
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=50.55 E-value=19 Score=19.63 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhCC
Q 041019 24 YEEIRTGYRSAILNYHP 40 (182)
Q Consensus 24 ~~eIk~aYrkl~~~~HP 40 (182)
.++.|.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47889999999999994
No 105
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=50.50 E-value=12 Score=22.96 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=14.0
Q ss_pred eEEEeCCCccceEEEEE
Q 041019 154 SVILPCGSCSLHVRLLV 170 (182)
Q Consensus 154 ~~~v~C~~CSl~i~V~~ 170 (182)
.-.++|.+||..|.+.+
T Consensus 29 ~~klrCGaCs~vl~~s~ 45 (46)
T PF11331_consen 29 QQKLRCGACSEVLSFSL 45 (46)
T ss_pred eeEEeCCCCceeEEEec
Confidence 34689999999998765
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.37 E-value=8.1 Score=32.07 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=25.7
Q ss_pred eeEEEecccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEEEEeccc
Q 041019 110 LDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLLVNADI 174 (182)
Q Consensus 110 ~~~~~~CrCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V~~~~~~ 174 (182)
......=+||||+..-...... ..+++ ..+|.|+.|| ++.|..++
T Consensus 192 vvpl~g~~C~GC~m~l~~~~~~----~V~~~-------------d~iv~CP~Cg---RILy~~e~ 236 (239)
T COG1579 192 VVPLEGRVCGGCHMKLPSQTLS----KVRKK-------------DEIVFCPYCG---RILYYDES 236 (239)
T ss_pred EEeecCCcccCCeeeecHHHHH----HHhcC-------------CCCccCCccc---hHHHhhhc
Confidence 3344445999998765543332 11222 2369999998 44555444
No 107
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=45.54 E-value=8.3 Score=32.77 Aligned_cols=44 Identities=25% Similarity=0.613 Sum_probs=33.1
Q ss_pred EEEec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE--------EEecccccccCC
Q 041019 112 LFYKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL--------LVNADIEVTADG 180 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V--------~~~~~~~~~~~~ 180 (182)
.|..| .|+. .+...+|++. .--|+.|..+.++ +++.+++.|++.
T Consensus 25 ~~~~c~~c~~--~~~~~~l~~~-----------------------~~vc~~c~~h~rl~areRi~~L~D~gsF~E~~~ 77 (285)
T TIGR00515 25 VWTKCPKCGQ--VLYTKELERN-----------------------LEVCPKCDHHMRMDARERIESLLDEGSFEEFNS 77 (285)
T ss_pred CeeECCCCcc--hhhHHHHHhh-----------------------CCCCCCCCCcCcCCHHHHHHHceeCCeeEEeCC
Confidence 58889 8887 4455566551 2479999999887 889999988865
No 108
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=45.14 E-value=18 Score=20.80 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=8.3
Q ss_pred EEEeCCCccceEE
Q 041019 155 VILPCGSCSLHVR 167 (182)
Q Consensus 155 ~~v~C~~CSl~i~ 167 (182)
.++.|++|++.|+
T Consensus 3 ~ll~C~~C~v~VH 15 (36)
T PF13831_consen 3 PLLFCDNCNVAVH 15 (36)
T ss_dssp EEEE-SSS--EEE
T ss_pred ceEEeCCCCCcCC
Confidence 3789999999986
No 109
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=45.09 E-value=10 Score=32.26 Aligned_cols=46 Identities=30% Similarity=0.637 Sum_probs=34.3
Q ss_pred EEEec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE--------EEecccccccCCCC
Q 041019 112 LFYKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL--------LVNADIEVTADGHL 182 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V--------~~~~~~~~~~~~~~ 182 (182)
.|..| .|+. .+...+|+.. .-.|+.|..+.++ +++.+++.+++.++
T Consensus 27 lw~KCp~c~~--~~y~~eL~~n-----------------------~~vcp~c~~h~ri~A~~Ri~~llD~gsf~el~~~l 81 (294)
T COG0777 27 LWTKCPSCGE--MLYRKELESN-----------------------LKVCPKCGHHMRISARERLEALLDEGSFEELDSPL 81 (294)
T ss_pred ceeECCCccc--eeeHHHHHhh-----------------------hhcccccCcccccCHHHHHHHhhCCCcceecccCC
Confidence 68889 8887 4455566651 3579999999877 78889998888753
No 110
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=44.40 E-value=11 Score=29.71 Aligned_cols=16 Identities=31% Similarity=0.858 Sum_probs=12.7
Q ss_pred EEEec-ccCCceeeccc
Q 041019 112 LFYKC-RCGDCFSIDSM 127 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~ 127 (182)
-+|.| +|+-.|.+.++
T Consensus 116 ~~Y~Cp~C~~rytf~eA 132 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEA 132 (178)
T ss_pred CEEECCCCCcEEeHHHH
Confidence 37789 99999888764
No 111
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=42.23 E-value=31 Score=30.01 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
.+..||.+-+-.||-+.. +..++|-+-|+.|++.++|-.+|..
T Consensus 74 Sq~~RRkma~qnP~mHNS------------EISK~LG~~WK~Lse~EKrPFi~EA 116 (331)
T KOG0527|consen 74 SQGQRRKLAKQNPKMHNS------------EISKRLGAEWKLLSEEEKRPFVDEA 116 (331)
T ss_pred hHHHHHHHHHhCcchhhH------------HHHHHHHHHHhhcCHhhhccHHHHH
Confidence 467788888888998654 7889999999999999999999964
No 112
>PRK12722 transcriptional activator FlhC; Provisional
Probab=42.23 E-value=12 Score=29.88 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=14.1
Q ss_pred EEec-ccCCceeeccccccc
Q 041019 113 FYKC-RCGDCFSIDSMELDD 131 (182)
Q Consensus 113 ~~~C-rCg~~f~~~~~~l~~ 131 (182)
..+| +||+.|..+..++..
T Consensus 134 l~~C~~Cgg~fv~~~~e~~~ 153 (187)
T PRK12722 134 LSSCNCCGGHFVTHAHDPVG 153 (187)
T ss_pred eccCCCCCCCeeccccccCC
Confidence 4469 699999988876643
No 113
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=42.08 E-value=14 Score=21.24 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=12.3
Q ss_pred EecccCCceeecccc
Q 041019 114 YKCRCGDCFSIDSME 128 (182)
Q Consensus 114 ~~CrCg~~f~~~~~~ 128 (182)
..|.|.++|.+++..
T Consensus 18 ~~C~CPeGyIlde~~ 32 (34)
T PF09064_consen 18 GQCFCPEGYILDEGS 32 (34)
T ss_pred CceeCCCceEecCCc
Confidence 369999999998754
No 114
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=41.64 E-value=8.9 Score=32.82 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=33.1
Q ss_pred EEEec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE--------EEecccccccCCC
Q 041019 112 LFYKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL--------LVNADIEVTADGH 181 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V--------~~~~~~~~~~~~~ 181 (182)
.|..| .|+. .+...+|++. .--|+.|..+.++ +++.+++.|++.+
T Consensus 37 lw~kc~~C~~--~~~~~~l~~~-----------------------~~vcp~c~~h~rltAreRI~~L~D~gSF~E~~~~ 90 (296)
T CHL00174 37 LWVQCENCYG--LNYKKFLKSK-----------------------MNICEQCGYHLKMSSSDRIELLIDPGTWNPMDED 90 (296)
T ss_pred CeeECCCccc--hhhHHHHHHc-----------------------CCCCCCCCCCcCCCHHHHHHHHccCCccEEcCCc
Confidence 58889 7887 4455566551 2469999998876 7889999988764
No 115
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=41.61 E-value=15 Score=28.27 Aligned_cols=16 Identities=19% Similarity=0.580 Sum_probs=12.5
Q ss_pred EEEec-ccCCceeeccc
Q 041019 112 LFYKC-RCGDCFSIDSM 127 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~ 127 (182)
-+|.| +|+..|.+.++
T Consensus 108 ~~Y~Cp~c~~r~tf~eA 124 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEA 124 (158)
T ss_pred CeEECCCCCcEeeHHHH
Confidence 37789 99998888654
No 116
>PRK12860 transcriptional activator FlhC; Provisional
Probab=40.56 E-value=13 Score=29.72 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHH---------HHHHHHHHHhcCc-------hhHHHHHHHH
Q 041019 20 VDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRF---------LKVQKAWEILSNS-------RSRAVYDSEL 83 (182)
Q Consensus 20 ~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f---------~~I~~Ay~vL~dp-------~~R~~YD~~l 83 (182)
-+.+.+.+.+-|+++.-.--| |... +.+.+.| ..+-..|..|.++ ..=+.|+.++
T Consensus 33 t~Ls~~rl~~Lyke~~G~SpP-kG~l--------P~S~dWF~tw~~nihsSlf~~iY~~l~~~~~~~~ieAli~AYrlY~ 103 (189)
T PRK12860 33 TTLSRDRLIRLYKEVRGVSPP-KGML--------PFSTDWFMTWLANIHASLFYNAYRFLKNEARCSGLDALTKGYRLYL 103 (189)
T ss_pred HCCCHHHHHHHHHHHcCCCCC-CCCC--------CCchHHHcCchhhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 355778888888876444433 4332 2222222 2344566666533 2345677777
Q ss_pred HHHhcccccccccCcccc-----cccCCCceeeEEEec-ccCCceeeccccccc
Q 041019 84 RALRQGMIAAEDVSLEDM-----MIEDNGEVLDLFYKC-RCGDCFSIDSMELDD 131 (182)
Q Consensus 84 ~~~~~~~~~~~~~~l~d~-----~~~~~~~~~~~~~~C-rCg~~f~~~~~~l~~ 131 (182)
....... ..-.++++-- .+ +.+ .--..+| +||+.|..+..++..
T Consensus 104 e~~~~~~-~~~~Ls~tRAw~LvRf~-~s~--~L~l~~C~~Cgg~fv~~~~e~~~ 153 (189)
T PRK12860 104 EHCCATG-TEPVLDLTRAWTLVRFF-DAG--MLQLARCCRCGGKFVTHAHDLRH 153 (189)
T ss_pred HHhcccC-CCceecHHHHHHHHHHh-cCC--CeeeccCCCCCCCeeccccccCC
Confidence 6421110 0011221110 01 122 1234468 699999988765543
No 117
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=39.64 E-value=44 Score=21.07 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
.+.++..++..||+.. ..+..+.|.+.|.-|++..+....+..
T Consensus 12 ~~~~~~~~k~~~p~~~------------~~~i~~~~~~~W~~l~~~eK~~y~~~a 54 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS------------NKEISKILAQMWKNLSEEEKAPYKEEA 54 (69)
T ss_dssp HHHHHHHHHHHSTTST------------HHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc------------cccchhhHHHHHhcCCHHHHHHHHHHH
Confidence 4556667777899864 357788999999999866655554444
No 118
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=39.13 E-value=1.3e+02 Score=20.63 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=25.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 041019 14 DILSVRVDASYEEIRTGYRSAILNYHPDKLQN 45 (182)
Q Consensus 14 ~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~ 45 (182)
.+.|+.|-++.+||+.|=.+.+++..--..++
T Consensus 7 ~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps 38 (78)
T PF10041_consen 7 TLRNFEPPATDEEIRAAALQYVRKVSGFRKPS 38 (78)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence 45678899999999999999998876555544
No 119
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=37.98 E-value=14 Score=31.51 Aligned_cols=45 Identities=31% Similarity=0.649 Sum_probs=33.7
Q ss_pred EEEec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE--------EEecccccccCCC
Q 041019 112 LFYKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL--------LVNADIEVTADGH 181 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V--------~~~~~~~~~~~~~ 181 (182)
.|..| .|+. .+...+|+.. .--|+.|..+.++ +++.+++.|++.+
T Consensus 26 ~~~~c~~c~~--~~~~~~l~~~-----------------------~~vc~~c~~h~rl~areRi~~L~D~gsF~E~~~~ 79 (292)
T PRK05654 26 LWTKCPSCGQ--VLYRKELEAN-----------------------LNVCPKCGHHMRISARERLDLLLDEGSFVELDAE 79 (292)
T ss_pred CeeECCCccc--hhhHHHHHhc-----------------------CCCCCCCCCCeeCCHHHHHHHHccCCccEEecCc
Confidence 58889 7887 4455566551 2479999999988 6889999988864
No 120
>smart00398 HMG high mobility group.
Probab=37.36 E-value=80 Score=19.61 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
....+...+.-||+.. ..+..+.|.+.|..|++..+....+..
T Consensus 13 ~~~~r~~~~~~~~~~~------------~~~i~~~~~~~W~~l~~~ek~~y~~~a 55 (70)
T smart00398 13 SQENRAKIKAENPDLS------------NAEISKKLGERWKLLSEEEKAPYEEKA 55 (70)
T ss_pred HHHHHHHHHHHCcCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555666788753 246678999999999976655555544
No 121
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=35.59 E-value=36 Score=25.75 Aligned_cols=37 Identities=16% Similarity=0.402 Sum_probs=24.1
Q ss_pred EEEec-ccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE
Q 041019 112 LFYKC-RCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL 168 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V 168 (182)
..|.| +||..|.+.+..... . . ...+.|+.|.-.+..
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~~-d-----~--------------~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQLL-D-----M--------------DGTFTCPRCGEELEE 135 (147)
T ss_pred cEEECcCCCCEeeHHHHHHhc-C-----C--------------CCcEECCCCCCEEEE
Confidence 47889 999999875432211 0 0 113899999987754
No 122
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=32.04 E-value=59 Score=23.03 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=27.0
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQ 44 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~ 44 (182)
-....+|.||.++..+|..+|-+.-...+++-+||-..
T Consensus 8 vs~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~~ 45 (93)
T cd01780 8 VSPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPSD 45 (93)
T ss_pred CCCCCCeeEEEccccccHHHHHHHHHHHhccCCCCccc
Confidence 45668999999999998887555444445555777543
No 123
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=31.22 E-value=31 Score=19.85 Aligned_cols=16 Identities=19% Similarity=0.632 Sum_probs=11.2
Q ss_pred EEecccCCceeecccc
Q 041019 113 FYKCRCGDCFSIDSME 128 (182)
Q Consensus 113 ~~~CrCg~~f~~~~~~ 128 (182)
.|.|.|..+|.+.++.
T Consensus 18 ~~~C~C~~Gy~L~~D~ 33 (36)
T PF14670_consen 18 SYRCSCPPGYKLAEDG 33 (36)
T ss_dssp SEEEE-STTEEE-TTS
T ss_pred ceEeECCCCCEECcCC
Confidence 4679999999998753
No 124
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=30.31 E-value=25 Score=24.01 Aligned_cols=53 Identities=25% Similarity=0.585 Sum_probs=23.9
Q ss_pred EEEec-ccCCce-eeccccc--cccccccccCCCccccCCCCC-CCceEEEeCCCccc
Q 041019 112 LFYKC-RCGDCF-SIDSMEL--DDMGYTLLKNGNKISLQSPDT-SPASVILPCGSCSL 164 (182)
Q Consensus 112 ~~~~C-rCg~~f-~~~~~~l--~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~C~~CSl 164 (182)
..|.| .||..- .|....+ +..|+...+++.....+.-+. +.-.|.+-|+.|--
T Consensus 3 i~Y~CRHCg~~IG~i~~~~v~~~~LGf~~Lt~eEr~dmI~~~~~G~i~V~~iCe~C~e 60 (76)
T PF10955_consen 3 IHYYCRHCGTKIGTIDASAVDEEQLGFHHLTPEERQDMISYDENGDIHVKVICEDCQE 60 (76)
T ss_pred eEEEecCCCCEEEEeeccccCHhhcCcccCCHHHHhhheEEcCCCCEEEEEecHHHHH
Confidence 57889 577432 2222222 223444333333222222222 22356668988854
No 125
>PHA00616 hypothetical protein
Probab=28.64 E-value=13 Score=22.65 Aligned_cols=14 Identities=43% Similarity=1.092 Sum_probs=10.1
Q ss_pred Eec-ccCCceeeccc
Q 041019 114 YKC-RCGDCFSIDSM 127 (182)
Q Consensus 114 ~~C-rCg~~f~~~~~ 127 (182)
|.| +||..|.-..+
T Consensus 2 YqC~~CG~~F~~~s~ 16 (44)
T PHA00616 2 YQCLRCGGIFRKKKE 16 (44)
T ss_pred CccchhhHHHhhHHH
Confidence 568 99998865543
No 126
>COG1281 Disulfide bond chaperones of the HSP33 family [Posttranslational modification, protein turnover, chaperones]
Probab=27.77 E-value=24 Score=30.08 Aligned_cols=20 Identities=25% Similarity=0.670 Sum_probs=16.9
Q ss_pred EEEec-ccCCceeeccccccc
Q 041019 112 LFYKC-RCGDCFSIDSMELDD 131 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~~l~~ 131 (182)
.-..| +||..|.++++++++
T Consensus 265 iev~C~FC~~~Y~f~~~ei~~ 285 (286)
T COG1281 265 IEVTCEFCGTKYLFDEEEIEE 285 (286)
T ss_pred eEEEeeccCCEEecCHHHHhc
Confidence 46679 999999999998875
No 127
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=25.52 E-value=16 Score=23.86 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=20.5
Q ss_pred ccCccccccCCCCCCHHHH-HHHHHHHHHhhCCCC
Q 041019 9 EETHYDILSVRVDASYEEI-RTGYRSAILNYHPDK 42 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eI-k~aYrkl~~~~HPDk 42 (182)
+.+++++||.++ +++ ...........|||-
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 457888999865 666 566677788889985
No 128
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=25.38 E-value=30 Score=26.05 Aligned_cols=10 Identities=40% Similarity=1.228 Sum_probs=6.7
Q ss_pred ec-ccCCceee
Q 041019 115 KC-RCGDCFSI 124 (182)
Q Consensus 115 ~C-rCg~~f~~ 124 (182)
.| +||..|.-
T Consensus 3 ~Ct~Cg~~f~d 13 (131)
T PF09845_consen 3 QCTKCGRVFED 13 (131)
T ss_pred ccCcCCCCcCC
Confidence 47 88886653
No 129
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=24.77 E-value=1.3e+02 Score=18.67 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHH
Q 041019 13 YDILSVRVDASYEEIRTGYRSAI 35 (182)
Q Consensus 13 Y~iLgv~~~as~~eIk~aYrkl~ 35 (182)
|.+=|+.|..+++|.|+.-|+-+
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dv 24 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDV 24 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHH
Confidence 56778999999999999888743
No 130
>PLN02569 threonine synthase
Probab=24.62 E-value=50 Score=30.18 Aligned_cols=19 Identities=0% Similarity=-0.062 Sum_probs=14.1
Q ss_pred EEeCCCccceEEEEEecccc
Q 041019 156 ILPCGSCSLHVRLLVNADIE 175 (182)
Q Consensus 156 ~v~C~~CSl~i~V~~~~~~~ 175 (182)
...| .|-..+.|.|+.+.+
T Consensus 65 ~~~C-~cgg~l~~~~d~~~~ 83 (484)
T PLN02569 65 VYRS-KSGGLLDVRHDMEAL 83 (484)
T ss_pred cccC-CCCCeEEEecchhhh
Confidence 3578 698999999986533
No 131
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=24.36 E-value=30 Score=25.03 Aligned_cols=8 Identities=63% Similarity=1.892 Sum_probs=4.3
Q ss_pred ec-ccCCce
Q 041019 115 KC-RCGDCF 122 (182)
Q Consensus 115 ~C-rCg~~f 122 (182)
.| |||..|
T Consensus 4 ~CtrCG~vf 12 (112)
T COG3364 4 QCTRCGEVF 12 (112)
T ss_pred eeccccccc
Confidence 35 666544
No 132
>COG5525 Bacteriophage tail assembly protein [General function prediction only]
Probab=24.14 E-value=51 Score=30.99 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=29.0
Q ss_pred eeeEEEec-ccCCceeecccc-ccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE
Q 041019 109 VLDLFYKC-RCGDCFSIDSME-LDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL 168 (182)
Q Consensus 109 ~~~~~~~C-rCg~~f~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V 168 (182)
...|+.+| .||..+.+.-++ ....|..- +-...+.+.|.-|...|+=
T Consensus 223 ~rr~yvpCPHCGe~q~l~~~e~~~~~g~~~-------------~~~~~~~~~c~h~~~~i~~ 271 (611)
T COG5525 223 QRRFYVPCPHCGEEQQLKFGEKSGPRGLKD-------------TPAEAAFIQCEHCGCVIRP 271 (611)
T ss_pred ceeEEeeCCCCCchhhccccccCCCcCccc-------------chhhhhhhhccccCceeee
Confidence 35677799 999988776533 22222111 0012356799999998875
No 133
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.74 E-value=24 Score=24.16 Aligned_cols=14 Identities=36% Similarity=1.113 Sum_probs=11.6
Q ss_pred eEEEec-ccCCceee
Q 041019 111 DLFYKC-RCGDCFSI 124 (182)
Q Consensus 111 ~~~~~C-rCg~~f~~ 124 (182)
.|.|.| -||..|.+
T Consensus 10 tY~Y~c~~cg~~~dv 24 (82)
T COG2331 10 TYSYECTECGNRFDV 24 (82)
T ss_pred ceEEeecccchHHHH
Confidence 588899 99998766
No 134
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=22.05 E-value=3.7e+02 Score=20.61 Aligned_cols=27 Identities=30% Similarity=0.180 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHH-----------HHhhCCCCCCC
Q 041019 19 RVDASYEEIRTGYRSA-----------ILNYHPDKLQN 45 (182)
Q Consensus 19 ~~~as~~eIk~aYrkl-----------~~~~HPDk~~~ 45 (182)
.|-+|.+++..+.... ++..|||-...
T Consensus 30 RPf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg~~ 67 (158)
T TIGR03180 30 RPFASAEALLAAADQAWQNLSEQDLFEALAGHPRIGEK 67 (158)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccCc
Confidence 3556666666666443 66779998753
No 135
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=21.95 E-value=82 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=18.0
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 041019 15 ILSVRVDASYEEIRTGYRSAI 35 (182)
Q Consensus 15 iLgv~~~as~~eIk~aYrkl~ 35 (182)
+|-|.++|+..+||+|...+-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577899999999999998763
No 136
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=21.53 E-value=50 Score=27.99 Aligned_cols=15 Identities=40% Similarity=1.083 Sum_probs=9.3
Q ss_pred ec-ccCCceeeccccccc
Q 041019 115 KC-RCGDCFSIDSMELDD 131 (182)
Q Consensus 115 ~C-rCg~~f~~~~~~l~~ 131 (182)
+| +||+ .|...-++.
T Consensus 247 pC~~CGt--~I~k~~~~g 262 (273)
T COG0266 247 PCRRCGT--PIEKIKLGG 262 (273)
T ss_pred CCCccCC--EeEEEEEcC
Confidence 79 8999 444444444
No 137
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.38 E-value=45 Score=29.43 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.7
Q ss_pred EEEeCCCccceEEEEE
Q 041019 155 VILPCGSCSLHVRLLV 170 (182)
Q Consensus 155 ~~v~C~~CSl~i~V~~ 170 (182)
..|+|+.|.||.+|.-
T Consensus 310 dcVgCekCrLWGkIQt 325 (425)
T COG5061 310 DCVGCEKCRLWGKIQT 325 (425)
T ss_pred HhcCchhhheeeeeee
Confidence 3689999999999864
No 138
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.14 E-value=88 Score=27.91 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHHHHH
Q 041019 54 HESGDRFLKVQKAWEI 69 (182)
Q Consensus 54 ~~a~~~f~~I~~Ay~v 69 (182)
+.|.+.|..|..||..
T Consensus 174 etA~qTy~~v~~aY~~ 189 (457)
T KOG2324|consen 174 ETAQQTYQLVDQAYDR 189 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666666643
No 139
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=21.10 E-value=1.8e+02 Score=20.21 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=27.6
Q ss_pred cCCCCCC-HHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHH
Q 041019 17 SVRVDAS-YEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYD 80 (182)
Q Consensus 17 gv~~~as-~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD 80 (182)
|++|++. ..+|-+.++.++..+++. ..+.+..|.+.| +.||.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~--------------~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG--------------DPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-----------------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHH--HcCHHHHhhcc
Confidence 4455442 334666666666666662 135677777777 67777777777
No 140
>COG2879 Uncharacterized small protein [Function unknown]
Probab=20.57 E-value=1.9e+02 Score=19.01 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=12.0
Q ss_pred HHHHHHHhhCCCCCCC
Q 041019 30 GYRSAILNYHPDKLQN 45 (182)
Q Consensus 30 aYrkl~~~~HPDk~~~ 45 (182)
.|-.-.++.|||+.+-
T Consensus 27 nYVehmr~~hPd~p~m 42 (65)
T COG2879 27 NYVEHMRKKHPDKPPM 42 (65)
T ss_pred HHHHHHHHhCcCCCcc
Confidence 4566678899999654
No 141
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=20.08 E-value=55 Score=21.26 Aligned_cols=11 Identities=18% Similarity=0.948 Sum_probs=8.8
Q ss_pred EEeCCCccceE
Q 041019 156 ILPCGSCSLHV 166 (182)
Q Consensus 156 ~v~C~~CSl~i 166 (182)
++.|..|-..|
T Consensus 37 ~irCReCG~RI 47 (62)
T KOG3507|consen 37 VIRCRECGYRI 47 (62)
T ss_pred cEehhhcchHH
Confidence 58999998755
Done!