Query 041019
Match_columns 182
No_of_seqs 277 out of 1483
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 100.0 1.7E-37 5.7E-42 238.9 11.7 147 1-172 1-149 (155)
2 2ctp_A DNAJ homolog subfamily 99.9 9E-23 3.1E-27 139.5 6.3 72 5-84 2-73 (78)
3 2ctr_A DNAJ homolog subfamily 99.9 2.2E-22 7.6E-27 140.7 8.3 76 5-88 2-77 (88)
4 2dn9_A DNAJ homolog subfamily 99.9 1.2E-22 4E-27 139.2 6.7 72 5-83 2-73 (79)
5 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.8E-22 6.1E-27 137.7 6.8 69 9-85 2-70 (77)
6 2cug_A Mkiaa0962 protein; DNAJ 99.9 3.2E-22 1.1E-26 139.9 7.8 70 7-84 14-83 (88)
7 1wjz_A 1700030A21RIK protein; 99.9 1.1E-22 3.9E-27 143.5 5.0 79 5-84 11-89 (94)
8 2yua_A Williams-beuren syndrom 99.9 3.9E-22 1.3E-26 142.4 6.5 72 6-84 13-84 (99)
9 2ej7_A HCG3 gene; HCG3 protein 99.9 4.1E-22 1.4E-26 137.4 6.4 72 6-83 5-76 (82)
10 2ctq_A DNAJ homolog subfamily 99.9 1E-21 3.5E-26 143.2 8.8 72 7-85 17-88 (112)
11 2och_A Hypothetical protein DN 99.9 5.2E-22 1.8E-26 134.1 5.8 67 7-83 5-71 (73)
12 2ctw_A DNAJ homolog subfamily 99.8 3.1E-21 1E-25 140.1 8.0 73 6-85 13-85 (109)
13 2lgw_A DNAJ homolog subfamily 99.8 3.1E-21 1.1E-25 137.9 7.8 70 10-85 2-71 (99)
14 2dmx_A DNAJ homolog subfamily 99.8 1.7E-21 5.9E-26 137.1 6.4 74 5-84 4-77 (92)
15 2o37_A Protein SIS1; HSP40, J- 99.8 2.8E-21 9.6E-26 136.2 6.5 71 8-88 6-76 (92)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 4.2E-21 1.4E-25 139.2 5.2 75 7-85 12-87 (109)
17 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.6E-21 5.3E-26 140.1 2.6 70 9-85 2-71 (103)
18 2ys8_A RAB-related GTP-binding 99.8 7.3E-20 2.5E-24 128.5 5.2 62 8-77 25-86 (90)
19 3apq_A DNAJ homolog subfamily 99.8 1.3E-19 4.4E-24 143.5 6.4 69 10-85 2-70 (210)
20 3hho_A CO-chaperone protein HS 99.8 1.8E-19 6.1E-24 140.8 6.4 75 8-84 2-78 (174)
21 1fpo_A HSC20, chaperone protei 99.8 2.6E-19 8.8E-24 139.6 3.9 73 10-84 1-75 (171)
22 3lz8_A Putative chaperone DNAJ 99.7 1.1E-19 3.8E-24 154.7 0.0 71 7-85 25-95 (329)
23 3bvo_A CO-chaperone protein HS 99.7 1.3E-18 4.4E-23 139.4 5.9 75 8-84 41-117 (207)
24 2jr7_A DPH3 homolog; DESR1, CS 99.7 9E-19 3.1E-23 121.8 3.4 65 91-178 3-67 (89)
25 1yop_A KTI11P; zinc finger, me 99.7 6.9E-19 2.3E-23 121.1 2.3 63 92-177 4-66 (83)
26 1faf_A Large T antigen; J doma 99.7 1.1E-18 3.8E-23 119.7 2.7 61 8-79 9-71 (79)
27 1wge_A Hypothetical protein 26 99.7 1.7E-18 5.7E-23 119.2 3.3 66 90-178 9-74 (83)
28 1gh6_A Large T antigen; tumor 99.7 1.6E-19 5.4E-24 132.1 -2.2 64 8-82 6-71 (114)
29 2pf4_E Small T antigen; PP2A, 99.7 2.7E-19 9.1E-24 139.6 -2.1 65 8-83 9-75 (174)
30 1iur_A KIAA0730 protein; DNAJ 99.7 2.3E-18 7.9E-23 120.4 2.7 64 7-76 13-76 (88)
31 3uo3_A J-type CO-chaperone JAC 99.7 5.8E-18 2E-22 133.0 4.6 71 4-84 5-82 (181)
32 2guz_A Mitochondrial import in 99.7 4.5E-18 1.5E-22 114.3 2.9 59 7-76 11-70 (71)
33 1n4c_A Auxilin; four helix bun 99.7 3.9E-18 1.3E-22 133.8 2.2 67 9-79 116-182 (182)
34 3ag7_A Putative uncharacterize 99.7 3.7E-18 1.3E-22 123.3 1.9 66 8-74 39-104 (106)
35 2qwo_B Putative tyrosine-prote 99.7 1.8E-17 6.1E-22 116.7 3.1 59 10-72 33-91 (92)
36 3apo_A DNAJ homolog subfamily 99.6 5.9E-17 2E-21 150.1 -0.2 73 7-86 18-90 (780)
37 2y4t_A DNAJ homolog subfamily 99.2 2.4E-11 8.1E-16 102.5 5.2 69 9-81 381-449 (450)
38 2guz_B Mitochondrial import in 99.0 1.9E-10 6.4E-15 75.7 4.8 52 10-72 4-58 (65)
39 2pzi_A Probable serine/threoni 90.6 0.13 4.4E-06 46.6 2.9 48 7-69 626-675 (681)
40 2e2z_A TIM15; protein import, 87.2 0.57 1.9E-05 32.6 3.5 39 109-168 9-50 (100)
41 4ayb_P DNA-directed RNA polyme 74.2 0.85 2.9E-05 27.3 0.5 14 113-126 3-17 (48)
42 4a3n_A Transcription factor SO 59.5 13 0.00045 22.9 4.1 42 28-81 14-55 (71)
43 1hry_A Human SRY; DNA, DNA-bin 59.0 22 0.00074 22.3 5.2 42 27-80 15-56 (76)
44 3nm9_A HMG-D, high mobility gr 55.6 21 0.00071 22.3 4.6 41 28-83 15-55 (73)
45 1wz6_A HMG-box transcription f 54.2 27 0.00093 22.3 5.1 43 27-81 18-60 (82)
46 1twf_L ABC10-alpha, DNA-direct 53.0 4.5 0.00015 26.2 1.0 15 111-125 26-41 (70)
47 1i11_A Transcription factor SO 51.0 21 0.00073 22.8 4.1 43 28-82 16-58 (81)
48 2crj_A SWI/SNF-related matrix- 50.1 26 0.00088 23.1 4.5 43 28-82 19-61 (92)
49 3f27_D Transcription factor SO 49.9 23 0.0008 22.6 4.2 42 28-81 18-59 (83)
50 3h0g_L DNA-directed RNA polyme 49.7 4.4 0.00015 25.7 0.5 14 112-125 20-34 (63)
51 1hme_A High mobility group pro 49.0 34 0.0012 21.4 4.9 42 28-81 18-59 (77)
52 1k99_A Upstream binding factor 47.7 45 0.0015 22.3 5.5 43 28-82 22-64 (99)
53 1wgf_A Upstream binding factor 44.4 24 0.0008 23.2 3.6 44 27-82 31-74 (90)
54 1ckt_A High mobility group 1 p 44.1 53 0.0018 20.0 6.2 43 29-81 14-56 (71)
55 3u2b_C Transcription factor SO 44.0 31 0.0011 21.7 4.1 42 28-81 14-55 (79)
56 2eqz_A High mobility group pro 41.5 59 0.002 20.9 5.2 44 28-81 27-70 (86)
57 2e6o_A HMG box-containing prot 41.0 31 0.0011 22.4 3.8 44 26-81 27-70 (87)
58 2cs1_A PMS1 protein homolog 1; 40.3 22 0.00074 23.4 2.9 42 28-81 19-60 (92)
59 2avu_E Flagellar transcription 40.1 9.4 0.00032 29.5 1.1 19 112-130 133-152 (192)
60 1gt0_D Transcription factor SO 37.4 28 0.00095 22.1 3.0 42 28-81 14-55 (80)
61 2b7e_A PRE-mRNA processing pro 36.6 75 0.0026 19.6 5.2 50 25-84 3-57 (59)
62 4euw_A Transcription factor SO 36.5 30 0.001 23.5 3.2 45 25-81 38-82 (106)
63 1qqr_A Streptokinase domain B; 35.9 18 0.00062 26.3 2.0 32 12-43 34-65 (138)
64 2d7l_A WD repeat and HMG-box D 35.9 20 0.00068 23.4 2.1 44 27-81 16-59 (81)
65 1j46_A SRY, sex-determining re 35.2 34 0.0012 22.0 3.2 41 28-81 16-56 (85)
66 1uzc_A Hypothetical protein FL 34.6 88 0.003 19.8 7.1 55 21-85 11-68 (71)
67 2lef_A LEF-1 HMG, protein (lym 33.8 38 0.0013 21.8 3.2 42 28-82 14-55 (86)
68 2co9_A Thymus high mobility gr 32.7 35 0.0012 22.9 3.0 43 28-82 29-71 (102)
69 3na7_A HP0958; flagellar bioge 27.8 11 0.00036 30.0 -0.4 34 115-166 198-232 (256)
70 1wxl_A Single-strand recogniti 27.4 99 0.0034 19.0 4.4 42 28-84 15-56 (73)
71 2yrq_A High mobility group pro 26.6 1.2E+02 0.0043 21.9 5.5 46 27-82 26-71 (173)
72 3cl3_D NF-kappa-B essential mo 25.8 92 0.0031 22.3 4.2 40 57-101 82-121 (130)
73 1aab_A High mobility group pro 24.8 67 0.0023 20.3 3.2 45 28-82 19-63 (83)
74 1ug2_A 2610100B20RIK gene prod 23.6 48 0.0016 22.5 2.3 24 21-44 67-90 (95)
75 1wg2_A Zinc finger (AN1-like) 22.8 28 0.00096 22.0 0.9 19 113-131 29-47 (64)
76 2gzk_A Sex-determining region 22.7 1E+02 0.0036 22.0 4.3 42 29-82 17-58 (159)
77 2yrq_A High mobility group pro 22.5 1.3E+02 0.0043 21.9 4.8 25 57-81 130-154 (173)
78 1wfh_A Zinc finger (AN1-like) 22.1 30 0.001 21.9 1.0 19 113-131 29-47 (64)
79 3tq6_A Transcription factor A, 22.1 95 0.0032 23.7 4.1 42 28-81 21-62 (214)
80 3zyq_A Hepatocyte growth facto 22.1 2.7E+02 0.0092 21.3 8.4 13 156-168 188-200 (226)
81 2cqn_A Formin-binding protein 21.9 1.6E+02 0.0056 18.8 5.5 60 23-88 7-67 (77)
82 3tmm_A Transcription factor A, 21.5 95 0.0033 24.2 4.1 43 28-82 53-95 (238)
83 2fiy_A Protein FDHE homolog; F 21.3 1.7E+02 0.0058 23.9 5.7 21 152-172 249-269 (309)
84 2csz_A Synaptotagmin-like prot 20.9 27 0.00092 22.9 0.6 10 157-166 43-52 (76)
85 1wff_A Riken cDNA 2810002D23 p 20.7 33 0.0011 22.9 1.0 19 113-131 40-58 (85)
86 2gzk_A Sex-determining region 20.6 1.2E+02 0.004 21.7 4.2 42 27-80 99-140 (159)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=238.86 Aligned_cols=147 Identities=27% Similarity=0.517 Sum_probs=122.4
Q ss_pred CCCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHH
Q 041019 1 MIFGERAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYD 80 (182)
Q Consensus 1 m~~~~~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD 80 (182)
||..+....+|||+||||+++++.++||+|||+|++++||||++.... ......+.+.|++|++||++|+||.+|+.||
T Consensus 1 mm~~~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~-~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd 79 (155)
T 2l6l_A 1 MMAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVP-AGTVEECVQKFIEIDQAWKILGNEETKREYD 79 (155)
T ss_dssp CCCCCCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCT-THHHHHHHHHHHHHHHHHHHSSSHHHHCHHH
T ss_pred CCCcccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCc-hhHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555666788999999999999999999999999999999999887321 1112346789999999999999999999999
Q ss_pred HHHHHHh--cccccccccCcccccccCCCceeeEEEecccCCceeeccccccccccccccCCCccccCCCCCCCceEEEe
Q 041019 81 SELRALR--QGMIAAEDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILP 158 (182)
Q Consensus 81 ~~l~~~~--~~~~~~~~~~l~d~~~~~~~~~~~~~~~CrCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (182)
..+.... ..+.....+.+++|.+.+... .|+++||||+.|.|++++++. | ++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~m~~~e~~~--~f~~~CrCG~~f~i~~~~l~~-~---------------------~~v~ 135 (155)
T 2l6l_A 80 LQRCEDDLRNVGPVDAQVYLEEMSWNEGDH--SFYLSCRCGGKYSVSKDEAEE-V---------------------SLIS 135 (155)
T ss_dssp HHHHHHHHHTTCSSSEEEETTTSEEETTTT--EEEEECSSSCEEEEETTHHHH-C---------------------CEEE
T ss_pred HHcchhhccccccccceeeHHHhccccCCc--EEEEcCCCCCeEEecHHHhCC-C---------------------CEEE
Confidence 9887543 235556677888998876654 699999999999999999975 1 3799
Q ss_pred CCCccceEEEEEec
Q 041019 159 CGSCSLHVRLLVNA 172 (182)
Q Consensus 159 C~~CSl~i~V~~~~ 172 (182)
|++|||||+|+|..
T Consensus 136 C~sCSl~~~v~~~~ 149 (155)
T 2l6l_A 136 CDTCSLIIELLHYN 149 (155)
T ss_dssp CSSSSCEEEEECCC
T ss_pred CCCCceEEEEEEcc
Confidence 99999999999964
No 2
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=9e-23 Score=139.47 Aligned_cols=72 Identities=31% Similarity=0.484 Sum_probs=66.4
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 5 ERAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 5 ~~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
+.....|||+||||+++++.++||+|||++++++|||+++. +.+.+.|+.|++||++|+||.+|+.||..+.
T Consensus 2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA--------PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS--------HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 45667899999999999999999999999999999999876 5788999999999999999999999998753
No 3
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=140.70 Aligned_cols=76 Identities=28% Similarity=0.470 Sum_probs=69.0
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 5 ERAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 5 ~~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
+.....|||+||||+++++.++||+|||+|++++|||+++. +.+.+.|++|++||++|+||.+|+.||..+.
T Consensus 2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 2 SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--------PDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS--------HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--------hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 44567899999999999999999999999999999999875 6788999999999999999999999999887
Q ss_pred HHhc
Q 041019 85 ALRQ 88 (182)
Q Consensus 85 ~~~~ 88 (182)
....
T Consensus 74 ~~~~ 77 (88)
T 2ctr_A 74 SAFT 77 (88)
T ss_dssp HHHT
T ss_pred cccc
Confidence 6443
No 4
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=139.18 Aligned_cols=72 Identities=29% Similarity=0.484 Sum_probs=65.9
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 5 ERAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 5 ~~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
+.....|||+||||+++++.++||+|||++++++|||+++.. +.+.+.|+.|++||++|+||.+|+.||.++
T Consensus 2 s~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-------PKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp CSSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC-------TTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-------HHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 456788999999999999999999999999999999998752 467899999999999999999999999865
No 5
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.87 E-value=1.8e-22 Score=137.68 Aligned_cols=69 Identities=32% Similarity=0.585 Sum_probs=63.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++++.++||+|||++++++|||+++. +.+.+.|+.|++||++|+||.+|+.||+++..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~--------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--------PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE 70 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC--------TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence 4799999999999999999999999999999999876 46789999999999999999999999997643
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=3.2e-22 Score=139.88 Aligned_cols=70 Identities=36% Similarity=0.591 Sum_probs=65.2
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
....|||+||||+++++.++||+|||++++++|||+++. +.+.+.|++|++||++|+||.+|+.||.++.
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--------PGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS--------TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--------hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 567899999999999999999999999999999999886 4678999999999999999999999999764
No 7
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.86 E-value=1.1e-22 Score=143.50 Aligned_cols=79 Identities=28% Similarity=0.574 Sum_probs=67.3
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 5 ERAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 5 ~~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
......|||+||||+++++.++||+|||+|++++|||+++.... ....+.+.+.|++|++||++|+||.+|+.||..+.
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~-~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVP-AGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCC-HHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCC-hhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 34668899999999999999999999999999999999874211 11124678899999999999999999999999864
No 8
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.9e-22 Score=142.41 Aligned_cols=72 Identities=28% Similarity=0.513 Sum_probs=65.6
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 6 RAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 6 ~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.....+||+||||+++++.++||+|||+|++++|||+++. .+.+.+.|++|++||++|+||.+|+.||+.+.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG-------SAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSS-------CSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 3567899999999999999999999999999999999875 25688999999999999999999999998653
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.1e-22 Score=137.38 Aligned_cols=72 Identities=35% Similarity=0.560 Sum_probs=64.9
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 6 RAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 6 ~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
.+...|||+||||+++++.++||+|||++++++|||+++.. .+.+.+.|++|++||++|+||.+|+.||.++
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN------KEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT------HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 35678999999999999999999999999999999998752 1367789999999999999999999999865
No 10
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=143.19 Aligned_cols=72 Identities=36% Similarity=0.455 Sum_probs=66.6
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
....|||+||||+++|+.++||+|||+|++++|||+++.. +.+.+.|++|++||++|+||.+|+.||+.+..
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-------PKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC-------STHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 4568999999999999999999999999999999998752 46889999999999999999999999999875
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.85 E-value=5.2e-22 Score=134.08 Aligned_cols=67 Identities=36% Similarity=0.682 Sum_probs=61.2
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
....+||+||||+++++.++||+|||++++++|||+++. +.+.|++|++||++|+||.+|+.||+.+
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~----------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD----------GAEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT----------CHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC----------HHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 356799999999999999999999999999999999865 1478999999999999999999999865
No 12
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=3.1e-21 Score=140.08 Aligned_cols=73 Identities=30% Similarity=0.582 Sum_probs=66.7
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 6 RAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 6 ~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
.....+||+||||+++|+.++||+|||+|++++|||+++. .+.+.+.|++|++||++|+||.+|+.||..+..
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-------~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD-------NPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTT-------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-------cHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 3567899999999999999999999999999999999875 256789999999999999999999999998765
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=137.88 Aligned_cols=70 Identities=34% Similarity=0.602 Sum_probs=64.1
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
.|||+||||+++++.++||+|||++++++|||+++.. .+.+.+.|+.|++||++|+||.+|+.||..+..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~------~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN------KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE 71 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC------CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 5899999999999999999999999999999998752 246788999999999999999999999998764
No 14
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=137.11 Aligned_cols=74 Identities=34% Similarity=0.568 Sum_probs=66.3
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 5 ERAIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 5 ~~~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
......|||+||||+++++.++||+|||+|++++|||+++.. .+.+.+.|++|++||++|+||.+|+.||..+.
T Consensus 4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN------KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC------SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 345678999999999999999999999999999999998752 24678899999999999999999999999764
No 15
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.8e-21 Score=136.17 Aligned_cols=71 Identities=35% Similarity=0.633 Sum_probs=64.2
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 041019 8 IEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRALR 87 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~~ 87 (182)
...|||+||||+++++.++||+|||+|++++|||+++. ..+.|++|++||++|+||.+|+.||.++....
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----------~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 75 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG----------DTEKFKEISEAFEILNDPQKREIYDQYGLEAA 75 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC----------CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence 56899999999999999999999999999999999865 14689999999999999999999999887644
Q ss_pred c
Q 041019 88 Q 88 (182)
Q Consensus 88 ~ 88 (182)
.
T Consensus 76 ~ 76 (92)
T 2o37_A 76 R 76 (92)
T ss_dssp H
T ss_pred h
Confidence 3
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.82 E-value=4.2e-21 Score=139.17 Aligned_cols=75 Identities=25% Similarity=0.458 Sum_probs=66.6
Q ss_pred CCccCccccccCCCCC-CHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDA-SYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~a-s~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
....|||+||||+++| +.++||+|||++++++|||++++ ....+.+.+.|++|++||++|+||.+|+.||..+..
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~----~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN----KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS----HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 5678999999999999 99999999999999999999864 111256788999999999999999999999998853
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.82 E-value=1.6e-21 Score=140.14 Aligned_cols=70 Identities=36% Similarity=0.640 Sum_probs=64.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
..|||+||||+++++.++||+|||+|++++|||+++.. +.+.+.|++|++||++|+||.+|+.||..+..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-------KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT-------CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence 57999999999999999999999999999999998752 46788999999999999999999999997754
No 18
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-20 Score=128.47 Aligned_cols=62 Identities=29% Similarity=0.386 Sum_probs=57.4
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHH
Q 041019 8 IEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRA 77 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~ 77 (182)
...|||+||||+++++.++||+|||+|++++||||++. +.+.+.|++|++||++|+||.+|+
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~--------~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA--------PGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC--------TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--------ccHHHHHHHHHHHHHHHCCccccc
Confidence 35899999999999999999999999999999999876 467889999999999999998875
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.78 E-value=1.3e-19 Score=143.52 Aligned_cols=69 Identities=33% Similarity=0.550 Sum_probs=63.9
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
.|||+||||+++|+.++||+|||++++++||||++.. +.+.+.|+.|++||++|+||.+|+.||+.+..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~-------~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-------PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC-------TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-------hHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence 5899999999999999999999999999999998752 46789999999999999999999999998754
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.78 E-value=1.8e-19 Score=140.81 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=63.4
Q ss_pred CccCccccccCCCCCC--HHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 8 IEETHYDILSVRVDAS--YEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as--~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
...|||+||||+++++ .++||++||++++++||||+++.+. .....+.+.|..|++||++|+||.+|+.||..+.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~--~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASE--RDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCH--HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcH--HHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 4689999999999998 9999999999999999999876321 0112367899999999999999999999999875
No 21
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.76 E-value=2.6e-19 Score=139.58 Aligned_cols=73 Identities=18% Similarity=0.341 Sum_probs=62.9
Q ss_pred cCccccccCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 10 ETHYDILSVRVDA--SYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 10 ~d~Y~iLgv~~~a--s~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.|||+||||++++ +..+||++||++++++||||+++.+. .....+.+.|..|++||+||+||.+|+.||..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~--~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQ--AEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCH--HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCH--HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 3799999999999 99999999999999999999886321 1112456799999999999999999999999875
No 22
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.74 E-value=1.1e-19 Score=154.71 Aligned_cols=71 Identities=30% Similarity=0.552 Sum_probs=0.0
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRA 85 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~ 85 (182)
+...|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~--------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE--------NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC--------hHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence 445899999999999999999999999999999999876 46788999999999999999999999998543
No 23
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=139.43 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=63.5
Q ss_pred CccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 8 IEETHYDILSVRVD--ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~--as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
...|||+||||+++ ++.++||++||+|++++||||+++.+. .....+.+.|+.|++||+||+||.+|+.||..+.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~--~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQ--TEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCH--HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCH--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 46799999999987 689999999999999999999876321 1112456789999999999999999999998764
No 24
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9e-19 Score=121.76 Aligned_cols=65 Identities=32% Similarity=0.734 Sum_probs=55.9
Q ss_pred ccccccCcccccccCCCceeeEEEecccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEEEE
Q 041019 91 IAAEDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLLV 170 (182)
Q Consensus 91 ~~~~~~~l~d~~~~~~~~~~~~~~~CrCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V~~ 170 (182)
.+++.++|+||.+++++. .|+|+||||+.|.|++++|+. ++.+++|++|||||+|+|
T Consensus 3 ~vydeV~LeDm~~de~~~--~y~ypCrCGd~F~IteedLe~---------------------ge~iv~C~sCSL~IkV~y 59 (89)
T 2jr7_A 3 VFHDEVEIEDFQYDEDSE--TYFYPCPCGDNFSITKEDLEN---------------------GEDVATCPSCSLIIKVIY 59 (89)
T ss_dssp SCSCEEETTTSEEETTTT--EEEEECTTSSEEEEEHHHHHH---------------------TCCEEECTTTCCEEEEEC
T ss_pred cceeEEEHHHcEEcCCCC--EEEEcCCCCCEEEECHHHHhC---------------------CCEEEECCCCccEEEEEE
Confidence 467889999999987765 699999999999999999976 235799999999999999
Q ss_pred eccccccc
Q 041019 171 NADIEVTA 178 (182)
Q Consensus 171 ~~~~~~~~ 178 (182)
+.+++.+.
T Consensus 60 ~~~~~~~~ 67 (89)
T 2jr7_A 60 DKDQFVSG 67 (89)
T ss_dssp CHHHHCCS
T ss_pred cccccccc
Confidence 99887543
No 25
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=99.73 E-value=6.9e-19 Score=121.14 Aligned_cols=63 Identities=25% Similarity=0.546 Sum_probs=55.6
Q ss_pred cccccCcccccccCCCceeeEEEecccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEEEEe
Q 041019 92 AAEDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLLVN 171 (182)
Q Consensus 92 ~~~~~~l~d~~~~~~~~~~~~~~~CrCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V~~~ 171 (182)
+++.++|+||.+++++. .|+|+||||+.|.|++++|+. ++++++|++|||||+|+|+
T Consensus 4 ~~dev~leDm~~de~~~--~y~ypCrCGd~F~it~edL~~---------------------ge~iv~C~sCSL~I~V~~~ 60 (83)
T 1yop_A 4 TYDEIEIEDMTFEPENQ--MFTYPCPCGDRFQIYLDDMFE---------------------GEKVAVCPSCSLMIDVVFD 60 (83)
T ss_dssp CSBCCBGGGSEEETTTT--EEEEEETTTEEEEEEHHHHHT---------------------TCCEEECSSSCCEEECBCC
T ss_pred eeeEEEHHHcEEcCCCC--EEEEeCCCCCeEEECHHHHhC---------------------CCEEEECCCCccEEEEEEc
Confidence 57889999999987765 699999999999999999975 2468999999999999999
Q ss_pred cccccc
Q 041019 172 ADIEVT 177 (182)
Q Consensus 172 ~~~~~~ 177 (182)
.+++..
T Consensus 61 ~~d~~~ 66 (83)
T 1yop_A 61 KEDLAE 66 (83)
T ss_dssp SSHHHH
T ss_pred cccccc
Confidence 998764
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.72 E-value=1.1e-18 Score=119.69 Aligned_cols=61 Identities=15% Similarity=0.288 Sum_probs=55.0
Q ss_pred CccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHH
Q 041019 8 IEETHYDILSVRVD--ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVY 79 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~--as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~Y 79 (182)
...++|+||||+++ ++.++||+|||+|++++|||+++. .+.|++|++||++|+|+.+|..+
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----------~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-----------HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-----------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------HHHHHHHHHHHHHHhhHHHHHHH
Confidence 44689999999999 999999999999999999999754 47899999999999999888763
No 27
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=99.72 E-value=1.7e-18 Score=119.22 Aligned_cols=66 Identities=29% Similarity=0.695 Sum_probs=56.7
Q ss_pred cccccccCcccccccCCCceeeEEEecccCCceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEEE
Q 041019 90 MIAAEDVSLEDMMIEDNGEVLDLFYKCRCGDCFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRLL 169 (182)
Q Consensus 90 ~~~~~~~~l~d~~~~~~~~~~~~~~~CrCg~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V~ 169 (182)
..+.+.++|+||.+++++. .|+|+||||+.|.|++++|+. ++.+++|++|||||+|+
T Consensus 9 ~~~~dev~LeDm~~de~~~--~y~y~CrCGd~F~it~edL~~---------------------ge~iv~C~sCSL~I~V~ 65 (83)
T 1wge_A 9 AVFHDEVEIEDFQYDEDSE--TYFYPCPCGDNFAITKEDLEN---------------------GEDVATCPSCSLIIKVI 65 (83)
T ss_dssp CCCSCEEEGGGSCCBTTTT--EEEECCSSSSCEEEEHHHHHT---------------------TCCEEECTTTCCEEEEE
T ss_pred ceeeEEEEHHHceEccCCC--EEEEeCCCCCEEEECHHHHhC---------------------CCEEEECCCCceEEEEE
Confidence 4567889999999987664 699999999999999999976 23579999999999999
Q ss_pred Eeccccccc
Q 041019 170 VNADIEVTA 178 (182)
Q Consensus 170 ~~~~~~~~~ 178 (182)
|+.+++.+.
T Consensus 66 ~~~~~~~~~ 74 (83)
T 1wge_A 66 YDKDQFMCG 74 (83)
T ss_dssp CCHHHHHTT
T ss_pred ecccccccc
Confidence 999887554
No 28
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.72 E-value=1.6e-19 Score=132.10 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=58.3
Q ss_pred CccCccccccCCCCCCH--HHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 8 IEETHYDILSVRVDASY--EEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~--~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
...++|+||||+++|+. ++||+|||+|++++||||++. .++|++|++||++|+||.+|+.||.+
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-----------~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----------EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-----------TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-----------HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 34689999999999998 999999999999999999765 35799999999999999999999853
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.71 E-value=2.7e-19 Score=139.57 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=57.2
Q ss_pred CccCccccccCCCCCC--HHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 8 IEETHYDILSVRVDAS--YEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as--~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
...++|+||||+++|+ .++||+|||++++++||||+++ .+.|++|++||++|+||.+|+.||+.+
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-----------~e~F~~I~~AYevLsdp~kR~~YD~~G 75 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----------EEKMKKMNTLYKKMEDGVKYAHQPDFG 75 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-----------CTTTTHHHHHHHHHHHHHHHHTSCGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-----------HHHHHHHHHHHHHhCCHHHHHHHhccC
Confidence 4579999999999998 6999999999999999999765 257999999999999999999999976
No 30
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.71 E-value=2.3e-18 Score=120.44 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=56.5
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSR 76 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R 76 (182)
....++|+||||+++|+.++||+|||+|+++||||+++.. .+.+.+.|++|++||++|++...|
T Consensus 13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~------~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN------HDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc------hHHHHHHHHHHHHHHHHHHhhccc
Confidence 4567899999999999999999999999999999998762 135789999999999999997665
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.70 E-value=5.8e-18 Score=133.02 Aligned_cols=71 Identities=21% Similarity=0.384 Sum_probs=61.4
Q ss_pred CCCCCccCccccc------cCCC-CCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhH
Q 041019 4 GERAIEETHYDIL------SVRV-DASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSR 76 (182)
Q Consensus 4 ~~~~~~~d~Y~iL------gv~~-~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R 76 (182)
.......|||+|| |+++ +++.++||+|||+|++++|||++++ +.+.|+.|++||+||+||.+|
T Consensus 5 ~~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~----------a~~~f~~i~~AY~vL~dp~~R 74 (181)
T 3uo3_A 5 VQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ----------GSEQSSTLNQAYHTLKDPLRR 74 (181)
T ss_dssp --CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS----------CSSGGGSHHHHHHHHHSHHHH
T ss_pred cCCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc----------HHHHHHHHHHHHHHHcChHHH
Confidence 3446678999999 4665 8999999999999999999999875 346799999999999999999
Q ss_pred HHHHHHHH
Q 041019 77 AVYDSELR 84 (182)
Q Consensus 77 ~~YD~~l~ 84 (182)
+.||..+.
T Consensus 75 ~~Yd~~l~ 82 (181)
T 3uo3_A 75 SQYMLKLL 82 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999883
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.5e-18 Score=114.33 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=52.4
Q ss_pred CCccCccccccCCC-CCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhH
Q 041019 7 AIEETHYDILSVRV-DASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSR 76 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~-~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R 76 (182)
....++|+||||++ +++.++||+|||+|++++|||++++ .+.|++|++||++|+++..|
T Consensus 11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~-----------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-----------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC-----------HHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----------HHHHHHHHHHHHHHhhhhhc
Confidence 44568999999999 7999999999999999999999643 46899999999999998765
No 33
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.69 E-value=3.9e-18 Score=133.80 Aligned_cols=67 Identities=24% Similarity=0.447 Sum_probs=58.8
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVY 79 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~Y 79 (182)
..++|+||||+++|+.++||+|||++++++||||++.... ...+.+.|+.|++||++|+||.+|+.|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~----e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY----EQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTT----HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcch----HHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 3699999999999999999999999999999999876211 113788999999999999999999876
No 34
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.69 E-value=3.7e-18 Score=123.29 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=53.7
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCch
Q 041019 8 IEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSR 74 (182)
Q Consensus 8 ~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~ 74 (182)
...+||+|||++. |+.++||+|||++++++||||++..+.+......+.++|+.|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 4579999999996 99999999999999999999986422111111246889999999999999985
No 35
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.67 E-value=1.8e-17 Score=116.72 Aligned_cols=59 Identities=24% Similarity=0.403 Sum_probs=51.5
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcC
Q 041019 10 ETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSN 72 (182)
Q Consensus 10 ~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d 72 (182)
.++|++|||++.|+.++||+|||++++++||||+++.. ....+...|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~----~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQP----YEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTST----THHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----hHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999987621 012478899999999999974
No 36
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.60 E-value=5.9e-17 Score=150.11 Aligned_cols=73 Identities=32% Similarity=0.499 Sum_probs=40.7
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELRAL 86 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~ 86 (182)
....|||+||||+++|+.++||+|||+|++++||||++.. +.+.++|++|++||++|+||.+|+.||+.+...
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~-------~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-------PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC------------------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-------hHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence 4568999999999999999999999999999999998652 457789999999999999999999999987653
No 37
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.15 E-value=2.4e-11 Score=102.51 Aligned_cols=69 Identities=32% Similarity=0.593 Sum_probs=56.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 9 EETHYDILSVRVDASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 9 ~~d~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
..++|.+||+.+.++.++|+++|+++++++|||+.+... ....+...|+.|.+||++|+||.+|..||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~----~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEE----EKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHH----HHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 458999999999999999999999999999999987510 013478899999999999999999999997
No 38
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.04 E-value=1.9e-10 Score=75.70 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=45.9
Q ss_pred cCccccccCCCC---CCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcC
Q 041019 10 ETHYDILSVRVD---ASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSN 72 (182)
Q Consensus 10 ~d~Y~iLgv~~~---as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d 72 (182)
..-|.||||+++ ++.++|+++||+|....||||.++ ......|++|+++|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS-----------~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS-----------FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC-----------HHHHHHHHHHHHHHHH
Confidence 345889999999 999999999999999999999765 5677899999999864
No 39
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.63 E-value=0.13 Score=46.60 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=36.8
Q ss_pred CCccCccccccCCCCCCH--HHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 041019 7 AIEETHYDILSVRVDASY--EEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEI 69 (182)
Q Consensus 7 ~~~~d~Y~iLgv~~~as~--~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~v 69 (182)
...++||.|||++.+... .+|+++||++++..+++ ..++..|..|..|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~---------------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ---------------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH---------------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh---------------HHHHHHHHHhccc
Confidence 345679999999776544 67999999999965554 3578888888765
No 40
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=87.18 E-value=0.57 Score=32.63 Aligned_cols=39 Identities=13% Similarity=0.602 Sum_probs=26.9
Q ss_pred eeeEEEec-ccCC--ceeeccccccccccccccCCCccccCCCCCCCceEEEeCCCccceEEE
Q 041019 109 VLDLFYKC-RCGD--CFSIDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHVRL 168 (182)
Q Consensus 109 ~~~~~~~C-rCg~--~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i~V 168 (182)
.....|.| .|+. ...|++...+. +.|+|+|++|.-+-.|
T Consensus 9 ~~~l~FTC~~C~tRs~k~iSk~aY~~---------------------GvViv~C~gC~n~HlI 50 (100)
T 2e2z_A 9 KMMIAFTCKKCNTRSSHTMSKQAYEK---------------------GTVLISCPHCKVRHLI 50 (100)
T ss_dssp EEEEEEEETTTTEEEEEEEEHHHHHT---------------------SEEEEECTTTCCEEES
T ss_pred cEEEEEEccCCCCcchhhcCHHHhhC---------------------CEEEEEcCCCccceEe
Confidence 35678889 8886 34444443333 5789999999987655
No 41
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=74.23 E-value=0.85 Score=27.35 Aligned_cols=14 Identities=29% Similarity=0.949 Sum_probs=9.1
Q ss_pred EEec-ccCCceeecc
Q 041019 113 FYKC-RCGDCFSIDS 126 (182)
Q Consensus 113 ~~~C-rCg~~f~~~~ 126 (182)
.|.| |||..|..++
T Consensus 3 iY~C~rCg~~fs~~e 17 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQ 17 (48)
T ss_dssp --CCCCTTTTCCCCC
T ss_pred EEEeeccCCCccHHH
Confidence 4779 9999766544
No 42
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=59.52 E-value=13 Score=22.93 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH------------NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC------------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5667778888888863 24678899999999986665444443
No 43
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=59.01 E-value=22 Score=22.34 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHH
Q 041019 27 IRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYD 80 (182)
Q Consensus 27 Ik~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD 80 (182)
-.+.+|..++.-||+.... +..+.|.+.|..|++.++....+
T Consensus 15 f~~~~r~~~~~~~p~~~~~------------eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 15 WSRDQRRKMALENPRMRNS------------EISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHHCSCCSSS------------HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCCHH------------HHHHHHHhHHHhCCHHHHHHHHH
Confidence 3456677777889986543 56789999999998665444444
No 44
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=55.59 E-value=21 Score=22.35 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSEL 83 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l 83 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++ |..|...-
T Consensus 15 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~ls~---K~~y~~~A 55 (73)
T 3nm9_A 15 LNSARESIKRENPGIK------------VTEVAKRGGELWRAMKD---KSEWEAKA 55 (73)
T ss_dssp HHHHHHHHHHHSSSCC------------HHHHHHHHHHHHHHCSC---CHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHcCCc---hHHHHHHH
Confidence 4566777788899863 24778899999999987 66676543
No 45
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=54.18 E-value=27 Score=22.29 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 27 IRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 27 Ik~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
-.+.+|..++.-||+.... +..+.|.+.|..|++.++....+.
T Consensus 18 f~~~~r~~~~~~~p~~~~~------------eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 18 FCKRHRSLVRQEHPRLDNR------------GATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHHCSSSCTT------------HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHH------------HHHHHHHHHHhhCCHHHHHHHHHH
Confidence 3566777788889986443 567899999999997654444443
No 46
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=53.03 E-value=4.5 Score=26.15 Aligned_cols=15 Identities=33% Similarity=0.786 Sum_probs=12.0
Q ss_pred eEEEec-ccCCceeec
Q 041019 111 DLFYKC-RCGDCFSID 125 (182)
Q Consensus 111 ~~~~~C-rCg~~f~~~ 125 (182)
...|.| .||..|.+.
T Consensus 26 ~v~Y~C~~CG~~~e~~ 41 (70)
T 1twf_L 26 TLKYICAECSSKLSLS 41 (70)
T ss_dssp CCCEECSSSCCEECCC
T ss_pred eEEEECCCCCCcceeC
Confidence 357889 999988775
No 47
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=51.02 E-value=21 Score=22.76 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...++..
T Consensus 16 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~ls~eeK~~y~~~A 58 (81)
T 1i11_A 16 AKDERRKILQAFPDMH------------NSNISKILGSRWKAMTNLEKQPYYEEQ 58 (81)
T ss_dssp HHHHHHHHHTTCSSCC------------HHHHHHHHHHHHTTSCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHhhhhhCCHHHHHHHHHHH
Confidence 4566777777888753 346788999999999987766555544
No 48
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=50.10 E-value=26 Score=23.06 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 19 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~ls~eeK~~Y~~~A 61 (92)
T 2crj_A 19 LNERREQIRTRHPDLP------------FPEITKMLGAEWSKLQPAEKQRYLDEA 61 (92)
T ss_dssp HHHHHHHHHHHCTTCC------------HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567777788899853 346788999999999988765555543
No 49
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=49.94 E-value=23 Score=22.57 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH------------NAELSKMLGKSWKALTLAEKRPFVEE 59 (83)
T ss_dssp HHHHHHHHHHHCSSSC------------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5667788888899863 24678899999999986665444443
No 50
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=49.74 E-value=4.4 Score=25.70 Aligned_cols=14 Identities=36% Similarity=0.942 Sum_probs=10.5
Q ss_pred EEEec-ccCCceeec
Q 041019 112 LFYKC-RCGDCFSID 125 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~ 125 (182)
..|.| +||..+.+.
T Consensus 20 v~Y~C~~Cg~~~~l~ 34 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ 34 (63)
T ss_dssp CCCBCSSSCCBCCCC
T ss_pred eEEECCCCCCeeecC
Confidence 56889 999876654
No 51
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=48.97 E-value=34 Score=21.38 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS------------IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHHCTTCC------------HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556666777788842 34678899999999997665554443
No 52
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=47.70 E-value=45 Score=22.29 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
.+..|..++.-||+... .+..+.|.+.|..|++.++....+..
T Consensus 22 ~~~~r~~ik~~~P~~~~------------~eisk~lg~~Wk~ls~eeK~~Y~~~A 64 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMSN------------LDLTKILSKKYKELPEKKKMKYIQDF 64 (99)
T ss_dssp HHHHHHHHHTTCTTSCS------------HHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH------------HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45667777778888532 46788999999999988766655544
No 53
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=44.42 E-value=24 Score=23.19 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 27 IRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 27 Ik~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
-.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 31 F~~~~r~~~k~~~P~~~------------~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 31 FSEEKRRQLQEERPELS------------ESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHHHTHHHHHHHCTTSC------------HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35566777788899843 347788999999999976655444443
No 54
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=44.13 E-value=53 Score=20.05 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 29 TGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 29 ~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
+..|..++.-||+...+ ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~r~~~~~~~p~~~~~----------~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVN----------FSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHHCTTCCCC----------HHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHHCCCCCCc----------HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 44566667779986432 24678899999999998776555444
No 55
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=43.99 E-value=31 Score=21.69 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH------------NAEISKRLGKRWKLLKDSDKIPFIQE 55 (79)
T ss_dssp HHHHHHHHHTTSTTSC------------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5567777788888753 34678899999999986654444443
No 56
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.52 E-value=59 Score=20.88 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
.+..|..++.-||+...+ ..+..+.|.+.|..|++.++....+.
T Consensus 27 ~~~~r~~~k~~~p~~~~~----------~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVN----------FAEFSKKCSERWKTMSGKEKSKFDEM 70 (86)
T ss_dssp HHHHHHHHHHHCTTSCCC----------HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCc----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455666777789986432 34678899999999987665544443
No 57
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=40.99 E-value=31 Score=22.36 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 26 EIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 26 eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
--.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 27 lf~~~~r~~~~~~~P~~~------------~~eisk~lg~~Wk~ls~eeK~~y~~~ 70 (87)
T 2e6o_A 27 LFAKKYRVEYTQMYPGKD------------NRAISVILGDRWKKMKNEERRMYTLE 70 (87)
T ss_dssp HHHHHTHHHHHHHCTTSC------------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCC------------HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 345667777888899853 34677899999999996665444443
No 58
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.30 E-value=22 Score=23.44 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS------------LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSSC------------HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4556777777899853 34778899999999997665544443
No 59
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=40.05 E-value=9.4 Score=29.52 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=14.7
Q ss_pred EEEec-ccCCceeecccccc
Q 041019 112 LFYKC-RCGDCFSIDSMELD 130 (182)
Q Consensus 112 ~~~~C-rCg~~f~~~~~~l~ 130 (182)
-..+| +||+.|..+..++.
T Consensus 133 ~l~~C~~Cgg~fv~~~~~~~ 152 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAHQPV 152 (192)
T ss_dssp EEEECTTTCCEEEEESSCCS
T ss_pred eeCcCCCCCCCeeCccCCCC
Confidence 34568 99999999887753
No 60
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=37.45 E-value=28 Score=22.06 Aligned_cols=42 Identities=19% Similarity=0.400 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMH------------NSEISKRLGAEWKLLSETEKRPFIDE 55 (80)
T ss_dssp HHHHHHHHHTTSTTSC------------HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556677777788742 34678899999999997665544444
No 61
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=36.56 E-value=75 Score=19.62 Aligned_cols=50 Identities=6% Similarity=0.137 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH---HHHHHHhcC-ch-hHHHHHHHHH
Q 041019 25 EEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKV---QKAWEILSN-SR-SRAVYDSELR 84 (182)
Q Consensus 25 ~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I---~~Ay~vL~d-p~-~R~~YD~~l~ 84 (182)
++..++|.+|++...-|..-. =.+..+.| .--|.+|.| |. +++.|+.++.
T Consensus 3 eEae~aF~~lL~~~~V~s~ws----------weqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS----------FSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC----------HHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc----------HHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 577899999999886665433 23444555 357999997 65 6677888764
No 62
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=36.46 E-value=30 Score=23.50 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 25 EEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 25 ~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
---.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 38 ~lF~~~~r~~~k~~~P~~~------------~~eisk~lg~~Wk~ls~eeK~~Y~~~ 82 (106)
T 4euw_A 38 MVWAQAARRKLADQYPHLH------------NAELSKTLGKLWRLLNESEKRPFVEE 82 (106)
T ss_dssp HHHHHHHHHHHHHHCTTSC------------HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3346777888888899853 24678899999999987665555443
No 63
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=35.93 E-value=18 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=28.1
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHhhCCCCC
Q 041019 12 HYDILSVRVDASYEEIRTGYRSAILNYHPDKL 43 (182)
Q Consensus 12 ~Y~iLgv~~~as~~eIk~aYrkl~~~~HPDk~ 43 (182)
++..|.|....+.++++++=..+..++||+-.
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y~ 65 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPGYT 65 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTTEE
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCCcE
Confidence 36777888888999999999999999999964
No 64
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.92 E-value=20 Score=23.37 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 27 IRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 27 Ik~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
--+.+|..++.-||+.. + ..+..+.|.+.|..|++.++....+.
T Consensus 16 F~~e~R~~ik~~~P~~~-~----------~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 16 WLEENRSNILSDNPDFS-D----------EADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHHCTTCC-S----------HHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCc-h----------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567788888899964 1 34778899999999997665544443
No 65
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=35.20 E-value=34 Score=22.03 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++ ..|-.
T Consensus 16 ~~~~r~~~~~~~P~~~------------~~eisk~lg~~Wk~ls~eeK-~~y~~ 56 (85)
T 1j46_A 16 SRDQRRKMALENPRMR------------NSEISKQLGYQWKMLTEAEK-WPFFQ 56 (85)
T ss_dssp HHHHHHHHHHHSTTSC------------HHHHHHHHHHHHTTSCHHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHHCCHHHH-HHHHH
Confidence 4566777777888753 34677899999999986554 44443
No 66
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=34.62 E-value=88 Score=19.84 Aligned_cols=55 Identities=5% Similarity=0.068 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHH--HHHHHhcCc-hhHHHHHHHHHH
Q 041019 21 DASYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQ--KAWEILSNS-RSRAVYDSELRA 85 (182)
Q Consensus 21 ~as~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~--~Ay~vL~dp-~~R~~YD~~l~~ 85 (182)
.++.++.+.+|++|+...+-+.... - .+....|. .-|.+|.++ .+++.|+.+...
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~t---------W-e~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~ 68 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNAS---------W-EQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ 68 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCC---------H-HHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCC---------H-HHHHHHHccCccccccCCHHHHHHHHHHHHHH
Confidence 4689999999999999986554332 1 11122222 256667663 566667777653
No 67
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=33.75 E-value=38 Score=21.81 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++ ..|...
T Consensus 14 ~~~~r~~~~~~~P~~~------------~~eisk~lg~~Wk~ls~eeK-~~y~~~ 55 (86)
T 2lef_A 14 MKEMRANVVAESTLKE------------SAAINQILGRRWHALSREEQ-AKYYEL 55 (86)
T ss_dssp HHHHHHHHHHHSSCCC------------HHHHHHHHHHHHTTSCHHHH-HHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHhcCCHHHH-HHHHHH
Confidence 4556777777889853 24677899999999986654 444433
No 68
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.71 E-value=35 Score=22.90 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 29 ~~~~r~~i~~~~P~~~------------~~eisk~lg~~Wk~ls~eeK~~Y~~~A 71 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT------------FGEVSKIVASMWDGLGEEQKQVYKKKT 71 (102)
T ss_dssp HHHHHHHHHHHCTTSC------------HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4556777777899853 346778999999999876655554433
No 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.79 E-value=11 Score=30.02 Aligned_cols=34 Identities=21% Similarity=0.564 Sum_probs=19.9
Q ss_pred ecccCCcee-eccccccccccccccCCCccccCCCCCCCceEEEeCCCccceE
Q 041019 115 KCRCGDCFS-IDSMELDDMGYTLLKNGNKISLQSPDTSPASVILPCGSCSLHV 166 (182)
Q Consensus 115 ~CrCg~~f~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CSl~i 166 (182)
.=+|||||. |++..+...- .+ ..++.|+.|.=.+
T Consensus 198 ~~~C~GC~~~lppq~~~~i~-----~~-------------~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVL-----TS-------------GDMITCPYCGRIL 232 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHH-----HS-------------SSCEECTTTCCEE
T ss_pred CCccCCCCeeeCHHHHHHHH-----CC-------------CCEEECCCCCeeE
Confidence 348999875 5554444321 11 1269999997433
No 70
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=27.43 E-value=99 Score=18.99 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSELR 84 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~l~ 84 (182)
.+..|..++.-||+.. ..+..+.|.+.|..| ..|..|...-.
T Consensus 15 ~~~~r~~~~~~~p~~~------------~~eisk~lg~~Wk~l---~eK~~y~~~A~ 56 (73)
T 1wxl_A 15 LNDTRESIKRENPGIK------------VTEIAKKGGEMWKEL---KDKSKWEDAAA 56 (73)
T ss_dssp HHHHHHHHHHHSTTCC------------HHHHHHHHHHHHHTC---TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------------HHHHHHHHHHHHHhh---HhhHHHHHHHH
Confidence 4556677777899853 347788999999999 45666665433
No 71
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.60 E-value=1.2e+02 Score=21.94 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 27 IRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 27 Ik~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
--+..|..++.-||+.... ..+..+.|.+.|..|++.++....+..
T Consensus 26 F~~~~r~~~k~~~p~~~~~----------~~eisk~lg~~Wk~ls~~eK~~y~~~A 71 (173)
T 2yrq_A 26 FVQTCREEHKKKHPDASVN----------FSEFSKKCSERWKTMSAKEKGKFEDMA 71 (173)
T ss_dssp HHHHHHHHHHHHCTTCCCC----------HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556677788889995222 357788999999999987765555543
No 72
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=25.76 E-value=92 Score=22.34 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcccccccccCcccc
Q 041019 57 GDRFLKVQKAWEILSNSRSRAVYDSELRALRQGMIAAEDVSLEDM 101 (182)
Q Consensus 57 ~~~f~~I~~Ay~vL~dp~~R~~YD~~l~~~~~~~~~~~~~~l~d~ 101 (182)
..++..++-||..| -..||..++...........+.|+|+
T Consensus 82 KrkLAqLQ~AY~~L-----fqeYd~~lK~~~~~~e~~~~~ql~dL 121 (130)
T 3cl3_D 82 KRKLAQLQVAYHQL-----FQEYDNHIKSSVVGSERKRGMQLEDL 121 (130)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhccchHHHH
Confidence 35688999999988 47899999886655444445666665
No 73
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=24.81 E-value=67 Score=20.35 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
.+..|..++.-||+...+. .+..+.|.+.|..|++.++....+..
T Consensus 19 ~~~~r~~~~~~~p~~~~~~----------~eisk~lg~~Wk~ls~~eK~~y~~~A 63 (83)
T 1aab_A 19 VQTSREEHKKKHPDASVNF----------SEFSKKCSERWKTMSAKEKGKFEDMA 63 (83)
T ss_dssp HHHHHHHHTTSCTTTCCCS----------SSSHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcH----------HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556667777888864310 13467899999999977755554443
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.62 E-value=48 Score=22.53 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCC
Q 041019 21 DASYEEIRTGYRSAILNYHPDKLQ 44 (182)
Q Consensus 21 ~as~~eIk~aYrkl~~~~HPDk~~ 44 (182)
+-++++|+.+|+.|++.+|--...
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~~~ 90 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTACES 90 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999876544
No 75
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.84 E-value=28 Score=22.00 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=12.7
Q ss_pred EEecccCCceeeccccccc
Q 041019 113 FYKCRCGDCFSIDSMELDD 131 (182)
Q Consensus 113 ~~~CrCg~~f~~~~~~l~~ 131 (182)
.+.||||+.|=..-...+.
T Consensus 29 ~f~CrCg~~FC~~HR~~e~ 47 (64)
T 1wg2_A 29 GFKCKCGSTFCGSHRYPEK 47 (64)
T ss_dssp CEECTTSCEECSSSCSSTT
T ss_pred CeEeecCCEecccCCCccc
Confidence 5779999988554444443
No 76
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=22.72 E-value=1e+02 Score=21.96 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 29 TGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 29 ~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
...+..++.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 17 ~~~~~ki~~~~P~~~------------~~eisk~lg~~Wk~ls~~eK~~y~~~A 58 (159)
T 2gzk_A 17 RDQRRKMALENPRMR------------NSEISKQLGYQWKMLTEAEKWPFFQEA 58 (159)
T ss_dssp HHHHHHHHHHCSSCC------------HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC------------HHHHHHHHHHHHHHhhHHHhccHHHHH
Confidence 344555667899843 346788999999999877766655543
No 77
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.52 E-value=1.3e+02 Score=21.89 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 57 GDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 57 ~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
.+..+.|.+.|..|++.++....+.
T Consensus 130 ~ei~k~lg~~Wk~ls~~eK~~y~~~ 154 (173)
T 2yrq_A 130 GDVAKKLGEMWNNTAADDKQPYEKK 154 (173)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4667889999999997765554443
No 78
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.09 E-value=30 Score=21.88 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=12.4
Q ss_pred EEecccCCceeeccccccc
Q 041019 113 FYKCRCGDCFSIDSMELDD 131 (182)
Q Consensus 113 ~~~CrCg~~f~~~~~~l~~ 131 (182)
.+.||||..|=..-...+.
T Consensus 29 ~f~CrCg~~FC~~HRy~e~ 47 (64)
T 1wfh_A 29 GFMCRCGTTFCGSHRYPEV 47 (64)
T ss_dssp CEECSSSCEECTTTCSTTT
T ss_pred CEEeecCCEeccccCCccc
Confidence 4779999988554433333
No 79
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=22.08 E-value=95 Score=23.74 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDS 81 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~ 81 (182)
-+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 21 ~~~~r~~~k~~~P~~~------------~~eisk~lge~Wk~Ls~~EK~~y~~~ 62 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDAK------------TTELIRRIAQRWRELPDSKKKIYQDA 62 (214)
T ss_dssp HHHHHHHHHHHCTTSC------------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC------------HHHHHHHHHHHHHccCHHhhhHHHHH
Confidence 4566777788899863 35778899999999998766655553
No 80
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.05 E-value=2.7e+02 Score=21.29 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=9.5
Q ss_pred EEeCCCccceEEE
Q 041019 156 ILPCGSCSLHVRL 168 (182)
Q Consensus 156 ~v~C~~CSl~i~V 168 (182)
.+-|..||-.-..
T Consensus 188 ~v~C~~Cs~~~~~ 200 (226)
T 3zyq_A 188 QIFCGKCSSKYST 200 (226)
T ss_dssp CEECTTTCCEEEE
T ss_pred CEeChhhcCCccc
Confidence 3889999976543
No 81
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.94 E-value=1.6e+02 Score=18.79 Aligned_cols=60 Identities=15% Similarity=0.282 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHhc
Q 041019 23 SYEEIRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSN-SRSRAVYDSELRALRQ 88 (182)
Q Consensus 23 s~~eIk~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d-p~~R~~YD~~l~~~~~ 88 (182)
-..-++.+|+.+++...|....... =..+...|..-. +|..+.+ ..++..|+.++.....
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~-----We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~~Lke 67 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAV-----WEDIRERFVKEP-AFEDITLESERKRIFKDFMHVLEH 67 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCC-----HHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCC-----HHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999999887655411 123334444433 8999976 5777889888776443
No 82
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=21.48 E-value=95 Score=24.16 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 041019 28 RTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYDSE 82 (182)
Q Consensus 28 k~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD~~ 82 (182)
-+..|..++.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 53 ~~e~r~~~k~~~P~~~------------~~eisk~lge~Wk~Ls~~EK~~y~~~A 95 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK------------TTELIRRIAQRWRELPDSKKKIYQDAY 95 (238)
T ss_dssp HHHHHHHHHHHSTTSC------------HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555666777788753 357788999999999987766555543
No 83
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.30 E-value=1.7e+02 Score=23.89 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=16.7
Q ss_pred CceEEEeCCCccceEEEEEec
Q 041019 152 PASVILPCGSCSLHVRLLVNA 172 (182)
Q Consensus 152 ~~~~~v~C~~CSl~i~V~~~~ 172 (182)
.+.-+--|..|.-++|++|-.
T Consensus 249 ~~~r~e~C~~C~~YlK~~~~~ 269 (309)
T 2fiy_A 249 AVLRAETCPSCQGYLKQFYLE 269 (309)
T ss_dssp CSEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEcccccchHhhhhhc
Confidence 344566999999999999753
No 84
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.88 E-value=27 Score=22.87 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=7.5
Q ss_pred EeCCCccceE
Q 041019 157 LPCGSCSLHV 166 (182)
Q Consensus 157 v~C~~CSl~i 166 (182)
.+|+.|++.|
T Consensus 43 ~~C~~Ck~rV 52 (76)
T 2csz_A 43 NTCRGCNHLV 52 (76)
T ss_dssp SEETTTTEEC
T ss_pred CcCcccChhh
Confidence 5788888765
No 85
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.72 E-value=33 Score=22.92 Aligned_cols=19 Identities=26% Similarity=0.730 Sum_probs=12.7
Q ss_pred EEecccCCceeeccccccc
Q 041019 113 FYKCRCGDCFSIDSMELDD 131 (182)
Q Consensus 113 ~~~CrCg~~f~~~~~~l~~ 131 (182)
-+.||||..|-..-...+.
T Consensus 40 ~f~CrCg~~FC~~HRy~e~ 58 (85)
T 1wff_A 40 SFECRCGNNFCASHRYAEA 58 (85)
T ss_dssp CEECTTCCEECTTTCSTGG
T ss_pred CeEcCCCCEecccCCCccC
Confidence 5779999988554444444
No 86
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=20.56 E-value=1.2e+02 Score=21.68 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCchhHHHHH
Q 041019 27 IRTGYRSAILNYHPDKLQNTSELSDHDHESGDRFLKVQKAWEILSNSRSRAVYD 80 (182)
Q Consensus 27 Ik~aYrkl~~~~HPDk~~~~~~~~~~~~~a~~~f~~I~~Ay~vL~dp~~R~~YD 80 (182)
-.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 99 f~~~~r~~~~~~~p~~~------------~~ei~k~lg~~Wk~ls~~eK~~y~~ 140 (159)
T 2gzk_A 99 FCSEYRPKIKGEHPGLS------------IGDVAKKLGEMWNNTAADDKQPYEK 140 (159)
T ss_dssp HHHHHHHHHHHHCSCCC------------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhHhhHHHHHHhCCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44556666677788742 3467889999999998766444433
Done!