Query 041021
Match_columns 320
No_of_seqs 134 out of 1421
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.7 5.5E-16 1.2E-20 160.1 14.6 64 230-296 846-909 (1153)
2 PLN03210 Resistant to P. syrin 99.6 3E-15 6.4E-20 154.7 15.4 216 38-296 610-841 (1153)
3 PLN00113 leucine-rich repeat r 99.5 4.1E-13 8.8E-18 137.7 13.3 101 209-319 256-363 (968)
4 PLN00113 leucine-rich repeat r 99.4 9.7E-13 2.1E-17 134.9 13.2 86 203-291 275-367 (968)
5 KOG4341 F-box protein containi 99.4 2.4E-15 5.1E-20 132.5 -6.8 145 2-170 140-284 (483)
6 KOG4341 F-box protein containi 99.3 2.1E-13 4.5E-18 120.4 -3.8 245 1-295 165-441 (483)
7 KOG4194 Membrane glycoprotein 99.0 5.2E-10 1.1E-14 103.1 7.5 231 36-290 99-351 (873)
8 KOG4194 Membrane glycoprotein 98.9 8.5E-10 1.9E-14 101.7 2.7 79 209-290 289-375 (873)
9 PRK15387 E3 ubiquitin-protein 98.8 4E-08 8.6E-13 96.5 11.4 71 214-291 383-456 (788)
10 PRK15370 E3 ubiquitin-protein 98.8 5.8E-08 1.3E-12 95.6 11.0 194 39-290 199-398 (754)
11 PRK15370 E3 ubiquitin-protein 98.7 5.3E-08 1.1E-12 95.9 8.4 200 38-291 219-426 (754)
12 KOG1947 Leucine rich repeat pr 98.7 1.5E-09 3.2E-14 102.7 -2.9 87 209-299 358-446 (482)
13 PRK15387 E3 ubiquitin-protein 98.6 3.6E-07 7.8E-12 89.9 11.7 52 229-290 381-432 (788)
14 KOG0618 Serine/threonine phosp 98.5 1.8E-08 3.8E-13 97.6 0.6 136 4-172 192-327 (1081)
15 KOG0444 Cytoskeletal regulator 98.5 7.1E-09 1.5E-13 96.6 -2.9 80 204-286 237-322 (1255)
16 KOG0444 Cytoskeletal regulator 98.4 2.7E-08 5.9E-13 92.8 -0.9 196 37-268 171-376 (1255)
17 KOG0472 Leucine-rich repeat pr 98.4 1.7E-07 3.8E-12 83.2 4.1 88 200-291 422-539 (565)
18 KOG1947 Leucine rich repeat pr 98.4 1.4E-08 3E-13 96.1 -3.9 121 37-168 186-309 (482)
19 cd00116 LRR_RI Leucine-rich re 98.4 9.5E-08 2.1E-12 85.5 1.6 61 228-290 219-288 (319)
20 PRK15386 type III secretion pr 98.3 2.7E-06 5.9E-11 77.3 9.3 154 65-293 50-213 (426)
21 KOG2120 SCF ubiquitin ligase, 98.3 1.9E-08 4.2E-13 85.9 -5.2 89 67-167 185-273 (419)
22 KOG3207 Beta-tubulin folding c 98.3 1.2E-07 2.7E-12 84.8 -0.6 38 65-103 119-156 (505)
23 cd00116 LRR_RI Leucine-rich re 98.3 1.5E-07 3.3E-12 84.2 -0.6 213 37-291 21-261 (319)
24 PRK15386 type III secretion pr 98.2 1.1E-05 2.3E-10 73.5 9.7 71 37-135 50-120 (426)
25 KOG4658 Apoptotic ATPase [Sign 98.1 1.4E-06 3E-11 87.4 3.1 230 36-300 542-790 (889)
26 KOG3207 Beta-tubulin folding c 98.0 1.1E-06 2.4E-11 78.9 0.2 114 36-165 118-233 (505)
27 KOG2120 SCF ubiquitin ligase, 98.0 3.7E-07 8.1E-12 78.2 -2.8 40 227-266 335-375 (419)
28 PF14580 LRR_9: Leucine-rich r 98.0 7E-06 1.5E-10 66.5 3.8 109 38-164 41-150 (175)
29 KOG0472 Leucine-rich repeat pr 98.0 1.4E-07 2.9E-12 83.9 -6.6 221 37-291 66-308 (565)
30 PF13855 LRR_8: Leucine rich r 97.9 2.4E-05 5.1E-10 51.8 5.1 59 67-137 1-59 (61)
31 KOG0617 Ras suppressor protein 97.9 7.3E-07 1.6E-11 70.6 -3.4 82 65-164 31-112 (264)
32 PF13855 LRR_8: Leucine rich r 97.9 4.4E-05 9.6E-10 50.5 5.7 60 93-165 1-60 (61)
33 KOG4658 Apoptotic ATPase [Sign 97.8 2.8E-05 6.1E-10 78.2 4.8 204 35-272 567-788 (889)
34 PF14580 LRR_9: Leucine-rich r 97.8 1.9E-05 4E-10 64.0 2.9 108 37-165 17-124 (175)
35 KOG0618 Serine/threonine phosp 97.7 2.7E-05 5.9E-10 76.1 3.7 225 39-292 241-488 (1081)
36 KOG0617 Ras suppressor protein 97.7 2.1E-06 4.5E-11 68.0 -3.6 150 91-272 31-190 (264)
37 KOG3665 ZYG-1-like serine/thre 97.5 1.9E-05 4E-10 77.5 0.1 110 39-165 122-231 (699)
38 KOG4237 Extracellular matrix p 97.4 1.7E-05 3.7E-10 70.6 -1.5 41 38-82 90-130 (498)
39 KOG3665 ZYG-1-like serine/thre 97.4 3.6E-05 7.8E-10 75.5 0.1 125 91-263 120-259 (699)
40 KOG4237 Extracellular matrix p 97.3 2.1E-05 4.5E-10 70.1 -2.5 70 36-111 63-133 (498)
41 KOG1259 Nischarin, modulator o 96.9 0.00035 7.7E-09 60.4 1.5 59 227-290 326-384 (490)
42 PF12799 LRR_4: Leucine Rich r 96.8 0.0019 4E-08 39.5 3.6 38 231-270 2-39 (44)
43 PF12799 LRR_4: Leucine Rich r 96.5 0.006 1.3E-07 37.3 4.2 41 67-111 1-41 (44)
44 COG4886 Leucine-rich repeat (L 96.4 0.0032 7E-08 58.2 4.0 34 228-263 253-286 (394)
45 KOG1259 Nischarin, modulator o 96.1 0.00092 2E-08 57.9 -1.1 37 127-165 374-410 (490)
46 KOG3864 Uncharacterized conser 96.0 0.0017 3.8E-08 53.0 -0.1 71 64-143 122-192 (221)
47 KOG1909 Ran GTPase-activating 95.9 0.0022 4.7E-08 56.6 0.2 81 209-292 209-310 (382)
48 COG4886 Leucine-rich repeat (L 95.9 0.0099 2.1E-07 54.9 4.3 166 65-289 114-286 (394)
49 KOG3864 Uncharacterized conser 95.7 0.0021 4.6E-08 52.5 -0.6 66 227-293 122-189 (221)
50 PLN03150 hypothetical protein; 95.5 0.032 7E-07 54.8 6.7 108 40-166 419-527 (623)
51 PLN03150 hypothetical protein; 95.3 0.04 8.8E-07 54.1 6.5 89 204-294 434-529 (623)
52 KOG1644 U2-associated snRNP A' 95.2 0.057 1.2E-06 44.4 6.0 90 63-164 60-150 (233)
53 KOG2982 Uncharacterized conser 94.2 0.066 1.4E-06 46.7 4.2 13 153-165 198-210 (418)
54 KOG1909 Ran GTPase-activating 94.2 0.0094 2E-07 52.7 -1.0 82 209-291 181-281 (382)
55 KOG1644 U2-associated snRNP A' 94.0 0.14 3E-06 42.2 5.4 85 227-319 61-147 (233)
56 PF13306 LRR_5: Leucine rich r 93.6 0.5 1.1E-05 35.7 7.9 102 38-163 11-112 (129)
57 smart00367 LRR_CC Leucine-rich 93.5 0.03 6.4E-07 29.8 0.6 19 253-271 1-19 (26)
58 PF13504 LRR_7: Leucine rich r 93.0 0.076 1.7E-06 25.1 1.5 11 255-265 2-12 (17)
59 KOG2739 Leucine-rich acidic nu 92.8 0.034 7.5E-07 47.3 0.3 60 229-290 90-153 (260)
60 KOG2123 Uncharacterized conser 92.8 0.0044 9.5E-08 53.3 -5.0 86 227-318 38-123 (388)
61 KOG2739 Leucine-rich acidic nu 92.6 0.055 1.2E-06 46.1 1.3 13 91-103 63-75 (260)
62 KOG0532 Leucine-rich repeat (L 92.5 0.01 2.2E-07 55.9 -3.5 148 65-269 96-248 (722)
63 KOG1859 Leucine-rich repeat pr 91.5 0.0077 1.7E-07 58.3 -5.6 17 209-225 275-291 (1096)
64 KOG2123 Uncharacterized conser 90.8 0.015 3.3E-07 50.1 -4.0 40 65-109 39-78 (388)
65 PF13306 LRR_5: Leucine rich r 90.2 2.1 4.5E-05 32.2 7.8 65 37-111 33-97 (129)
66 KOG1859 Leucine-rich repeat pr 89.6 0.12 2.5E-06 50.6 0.4 12 126-137 108-119 (1096)
67 KOG2982 Uncharacterized conser 89.6 0.31 6.8E-06 42.7 2.9 37 66-103 70-107 (418)
68 KOG0532 Leucine-rich repeat (L 87.5 0.069 1.5E-06 50.5 -2.5 60 227-291 186-245 (722)
69 PF00560 LRR_1: Leucine Rich R 87.2 0.49 1.1E-05 23.9 1.7 16 256-272 2-17 (22)
70 KOG4579 Leucine-rich repeat (L 83.1 0.14 2.9E-06 39.7 -2.3 56 69-137 55-110 (177)
71 KOG0531 Protein phosphatase 1, 79.0 1 2.2E-05 42.0 1.4 35 65-103 116-150 (414)
72 KOG0531 Protein phosphatase 1, 67.9 2.7 6E-05 39.1 1.4 11 229-239 117-127 (414)
73 PF13516 LRR_6: Leucine Rich r 66.0 2.6 5.5E-05 21.5 0.5 12 254-265 2-13 (24)
74 smart00370 LRR Leucine-rich re 62.2 4.9 0.00011 20.9 1.1 17 93-110 2-18 (26)
75 smart00369 LRR_TYP Leucine-ric 62.2 4.9 0.00011 20.9 1.1 17 93-110 2-18 (26)
76 KOG4579 Leucine-rich repeat (L 57.6 2.7 5.9E-05 32.7 -0.5 83 68-165 28-111 (177)
77 COG5238 RNA1 Ran GTPase-activa 54.3 8.5 0.00018 33.6 1.8 90 38-137 29-130 (388)
78 smart00365 LRR_SD22 Leucine-ri 34.0 35 0.00075 18.0 1.6 16 93-109 2-17 (26)
79 smart00364 LRR_BAC Leucine-ric 26.3 36 0.00079 18.0 0.8 18 93-111 2-19 (26)
80 KOG3763 mRNA export factor TAP 24.7 40 0.00086 32.4 1.4 88 64-160 215-307 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=5.5e-16 Score=160.10 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=39.3
Q ss_pred CccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccccccee
Q 041021 230 ANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEI 296 (320)
Q Consensus 230 ~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~ 296 (320)
++|+.|++.+. .++.+|..+..+++|+.|++++|++++.++.. ...+++|+.+++++|+++.++
T Consensus 846 ~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 846 TNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCcccccc
Confidence 34555555543 44555555556677777777777777776552 245667777777777766544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=3e-15 Score=154.72 Aligned_cols=216 Identities=21% Similarity=0.279 Sum_probs=147.6
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
+.+|++|++.++ +++.+|.+. ..+++|+.|++++|..+..++. +..+++|++|++.+|..+..+|.
T Consensus 610 ~~~L~~L~L~~s-~l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~------ 675 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEKLWDGV----HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPS------ 675 (1153)
T ss_pred ccCCcEEECcCc-ccccccccc----ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccch------
Confidence 478899999865 477777653 5678899999988877766432 46788999999999988877754
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH-
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL- 196 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L- 196 (320)
....+++|+.|++++|.+++.++... ++++|+.|.+++|..++.+|... .+++.|
T Consensus 676 ----si~~L~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~~----------------~nL~~L~ 731 (1153)
T PLN03210 676 ----SIQYLNKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPDIS----------------TNISWLD 731 (1153)
T ss_pred ----hhhccCCCCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCcccccccc----------------CCcCeee
Confidence 12245889999999998888887532 57889999999988777665320 011111
Q ss_pred -hhcccccchHHHhcCCCCCceeccccccC--------------ccccCccceEEEccCCCcccccCCccCCCCccEEee
Q 041021 197 -LVANQIHLFDEKLSGLHKVQHLWKENAES--------------NKVFANLKSLEIFECSKLQKLVPTSWHLENLATLEV 261 (320)
Q Consensus 197 -~~~~~~~~~~~li~~~~~L~~l~~~~~~~--------------~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l 261 (320)
..+....+|..+ .+++|+.+.+.++.. ...+++|+.|++++|+.+..+|..+..+++|+.|++
T Consensus 732 L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 732 LDETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred cCCCccccccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 111222333321 233344333322110 034568888999988888888887788889999999
Q ss_pred cCccccccccCcchhhhccccCEEeEcccccccee
Q 041021 262 SKCHGLINLLTLSTSESLVNLERMKITDCKMMEEI 296 (320)
Q Consensus 262 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~ 296 (320)
++|+.++.+|... .+++|+.|++++|.++..+
T Consensus 810 s~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 810 ENCINLETLPTGI---NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred CCCCCcCeeCCCC---CccccCEEECCCCCccccc
Confidence 9998888887643 6788899999988777654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.47 E-value=4.1e-13 Score=137.67 Aligned_cols=101 Identities=21% Similarity=0.186 Sum_probs=58.0
Q ss_pred hcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccc
Q 041021 209 LSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVN 281 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 281 (320)
+.++++|+.+.+.++... ..+++|+.|++++|.-...++.....+++|+.|+++++.-...++. ....+++
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~ 333 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV--ALTSLPR 333 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh--hHhcCCC
Confidence 666667777666543221 4556777777777654445555556677777777777654333332 2346677
Q ss_pred cCEEeEccccccceeecccccccccceeEecccceeec
Q 041021 282 LERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLECLGL 319 (320)
Q Consensus 282 L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 319 (320)
|+.|++++|.--..+ ......+++|+.|+|
T Consensus 334 L~~L~L~~n~l~~~~--------p~~l~~~~~L~~L~L 363 (968)
T PLN00113 334 LQVLQLWSNKFSGEI--------PKNLGKHNNLTVLDL 363 (968)
T ss_pred CCEEECcCCCCcCcC--------ChHHhCCCCCcEEEC
Confidence 777777776422111 112234567777765
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.43 E-value=9.7e-13 Score=134.89 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=64.9
Q ss_pred cchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcch
Q 041021 203 HLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLST 275 (320)
Q Consensus 203 ~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 275 (320)
.+|.. +.++++|+.+.+.++... ..+++|+.|++.++.....++..+..+++|+.|++++|.-...+|. .
T Consensus 275 ~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~ 351 (968)
T PLN00113 275 PIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK--N 351 (968)
T ss_pred cCchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh--H
Confidence 35555 777888998888765322 5678999999999866666766678899999999999865445543 3
Q ss_pred hhhccccCEEeEcccc
Q 041021 276 SESLVNLERMKITDCK 291 (320)
Q Consensus 276 ~~~l~~L~~L~l~~C~ 291 (320)
...+++|+.|++++|.
T Consensus 352 l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 352 LGKHNNLTVLDLSTNN 367 (968)
T ss_pred HhCCCCCcEEECCCCe
Confidence 4567899999999874
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.41 E-value=2.4e-15 Score=132.51 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=95.5
Q ss_pred CceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCcc
Q 041021 2 LVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMS 81 (320)
Q Consensus 2 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 81 (320)
||.|+++||..+..-. .++...++|++++|.+.+|.++++.-... -...|++|++|.+..|.+++
T Consensus 140 lk~LSlrG~r~v~~ss-------------lrt~~~~CpnIehL~l~gc~~iTd~s~~s--la~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSS-------------LRTFASNCPNIEHLALYGCKKITDSSLLS--LARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred cccccccccccCCcch-------------hhHHhhhCCchhhhhhhcceeccHHHHHH--HHHhcchhhhhhhcccchhH
Confidence 6788888887766431 11345678999999999999888732211 24578999999999999999
Q ss_pred ccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEee
Q 041021 82 SAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLII 161 (320)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l 161 (320)
+.....+...|++|++|++++|+.|+.=.. .........++++...+|..+..=.... --...+.+.++++
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv--------~~~~rG~~~l~~~~~kGC~e~~le~l~~-~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWCPQISGNGV--------QALQRGCKELEKLSLKGCLELELEALLK-AAAYCLEILKLNL 275 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccCchhhcCcc--------hHHhccchhhhhhhhcccccccHHHHHH-HhccChHhhccch
Confidence 887777888999999999999998877111 1222233557777666776543211100 1122455666666
Q ss_pred ecCCCCCcc
Q 041021 162 ENCPDMETF 170 (320)
Q Consensus 162 ~~c~~l~~~ 170 (320)
..|..+++.
T Consensus 276 ~~c~~lTD~ 284 (483)
T KOG4341|consen 276 QHCNQLTDE 284 (483)
T ss_pred hhhccccch
Confidence 677666554
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.25 E-value=2.1e-13 Score=120.37 Aligned_cols=245 Identities=18% Similarity=0.200 Sum_probs=148.0
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
|+++|.+.+|.+++.. ... ++...|++|+.|.++.|..+++.-... ....|++|++|.++.|+.+
T Consensus 165 nIehL~l~gc~~iTd~--------s~~-----sla~~C~~l~~l~L~~c~~iT~~~Lk~--la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 165 NIEHLALYGCKKITDS--------SLL-----SLARYCRKLRHLNLHSCSSITDVSLKY--LAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred chhhhhhhcceeccHH--------HHH-----HHHHhcchhhhhhhcccchhHHHHHHH--HHHhhhhHHHhhhccCchh
Confidence 4566677777665544 111 233457888888888888877642221 2345788888888888776
Q ss_pred cccCchhHHhhcccCCeEEEccCccccee--ccccc-------cc-------cc--cCCCCCcCCccCeEeecCCccccc
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEV--LHLEE-------LS-------AD--KEHIGPLFPKLSELRLIDLPKLKR 142 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i--~~~~~-------~~-------~~--~~~~~~~~~~L~~L~l~~c~~l~~ 142 (320)
..-.-..+..++..++.+..++|..++.- ...+. .+ ++ ..........|+.|..++|..+.+
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 65433344566666666666666544310 00000 00 00 001122246777888888877655
Q ss_pred ccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceecccc
Q 041021 143 FCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKEN 222 (320)
Q Consensus 143 ~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~ 222 (320)
..... -..+.++|+.+.+.+|.++++..+..+ -.+|+.|+.+...+
T Consensus 310 ~~l~a-Lg~~~~~L~~l~l~~c~~fsd~~ft~l---------------------------------~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 310 EVLWA-LGQHCHNLQVLELSGCQQFSDRGFTML---------------------------------GRNCPHLERLDLEE 355 (483)
T ss_pred HHHHH-HhcCCCceEEEeccccchhhhhhhhhh---------------------------------hcCChhhhhhcccc
Confidence 54333 344567888888888877665543322 34566666655543
Q ss_pred ccC---------ccccCccceEEEccCCCcccc-----cCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEc
Q 041021 223 AES---------NKVFANLKSLEIFECSKLQKL-----VPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKIT 288 (320)
Q Consensus 223 ~~~---------~~~~~~L~~L~i~~c~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 288 (320)
+.. ...++.|+.|++++|..+++- ..+...+..|+.+++++|+.+++-... ....+++|+.+++.
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELI 434 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeee
Confidence 211 167888888888888877765 333456778888899999888876443 34567888888888
Q ss_pred cccccce
Q 041021 289 DCKMMEE 295 (320)
Q Consensus 289 ~C~~l~~ 295 (320)
+|.++.+
T Consensus 435 ~~q~vtk 441 (483)
T KOG4341|consen 435 DCQDVTK 441 (483)
T ss_pred chhhhhh
Confidence 8876643
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.03 E-value=5.2e-10 Score=103.09 Aligned_cols=231 Identities=19% Similarity=0.150 Sum_probs=136.4
Q ss_pred eccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccc
Q 041021 36 IGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEEL 115 (320)
Q Consensus 36 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 115 (320)
-++|+|+++.+. .+.++.++... .....|+.|.+.+. .+.++-... +..++.|++|+++.+ .|.+++.
T Consensus 99 ~nl~nLq~v~l~-~N~Lt~IP~f~----~~sghl~~L~L~~N-~I~sv~se~-L~~l~alrslDLSrN-~is~i~~---- 166 (873)
T KOG4194|consen 99 YNLPNLQEVNLN-KNELTRIPRFG----HESGHLEKLDLRHN-LISSVTSEE-LSALPALRSLDLSRN-LISEIPK---- 166 (873)
T ss_pred hcCCcceeeeec-cchhhhccccc----ccccceeEEeeecc-ccccccHHH-HHhHhhhhhhhhhhc-hhhcccC----
Confidence 467888888886 34466654433 23345888888773 455543333 477888888888887 6777654
Q ss_pred ccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccc--cccc-----cc----c-
Q 041021 116 SADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTF--VLYM-----TT----D- 183 (320)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~--~~~~-----~~----~- 183 (320)
..+... +++++|++++. .+..+..+ .+.++.+|..+++++. .++.+|.-.+. .++. .+ .
T Consensus 167 ----~sfp~~-~ni~~L~La~N-~It~l~~~--~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 167 ----PSFPAK-VNIKKLNLASN-RITTLETG--HFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred ----CCCCCC-CCceEEeeccc-cccccccc--cccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeeh
Confidence 122222 57888888765 45444433 2455666677776653 34444432220 0000 00 0
Q ss_pred ccccccccChhHH--hhcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccC-CccCC
Q 041021 184 NKEAQKLKSEENL--LVANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVP-TSWHL 253 (320)
Q Consensus 184 ~~~~~~l~~l~~L--~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~-~~~~~ 253 (320)
-...+++.++++| ..+.+..+.+..+..|.+++++.+..+... -.+++|+.|++++. .+..+.. ....+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Wsft 316 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhc
Confidence 0123445555543 233333333333777888888777654332 35677888888875 4444432 33578
Q ss_pred CCccEEeecCccccccccCcchhhhccccCEEeEccc
Q 041021 254 ENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 254 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
++|+.|++++ ++|+.++..++ ..+..|++|.+++.
T Consensus 317 qkL~~LdLs~-N~i~~l~~~sf-~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 317 QKLKELDLSS-NRITRLDEGSF-RVLSQLEELNLSHN 351 (873)
T ss_pred ccceeEeccc-cccccCChhHH-HHHHHhhhhccccc
Confidence 8999999998 67999888654 47788999988764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.88 E-value=8.5e-10 Score=101.70 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=61.8
Q ss_pred hcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCC-ccCCCCccEEeecCccccccccCcchhhhcc
Q 041021 209 LSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKCHGLINLLTLSTSESLV 280 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 280 (320)
+.++++|+.+.++.+.++ ..+++|+.|+++.. .++.+++. +..+..|++|.++. +.++.+...+ ...+.
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~a-f~~ls 365 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGA-FVGLS 365 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhhH-HHHhh
Confidence 566777887777655443 78899999999985 77887764 36788999999998 6788887754 45779
Q ss_pred ccCEEeEccc
Q 041021 281 NLERMKITDC 290 (320)
Q Consensus 281 ~L~~L~l~~C 290 (320)
+|++|++.+.
T Consensus 366 sL~~LdLr~N 375 (873)
T KOG4194|consen 366 SLHKLDLRSN 375 (873)
T ss_pred hhhhhcCcCC
Confidence 9999999875
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=4e-08 Score=96.52 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=46.4
Q ss_pred CCceeccccccCc---cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccc
Q 041021 214 KVQHLWKENAESN---KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 214 ~L~~l~~~~~~~~---~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
+|+.+.+.++... ..+++|+.|+++++ .++.+|. .+..|+.|++++ ++++.+|.. ...+++|+.|+++++
T Consensus 383 ~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N-~LssIP~---l~~~L~~L~Ls~-NqLt~LP~s--l~~L~~L~~LdLs~N 455 (788)
T PRK15387 383 GLKELIVSGNRLTSLPVLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR-NQLTRLPES--LIHLSSETTVNLEGN 455 (788)
T ss_pred ccceEEecCCcccCCCCcccCCCEEEccCC-cCCCCCc---chhhhhhhhhcc-CcccccChH--HhhccCCCeEECCCC
Confidence 4566666554332 23457888888886 4666654 235677888877 457777652 346788888998887
Q ss_pred c
Q 041021 291 K 291 (320)
Q Consensus 291 ~ 291 (320)
+
T Consensus 456 ~ 456 (788)
T PRK15387 456 P 456 (788)
T ss_pred C
Confidence 4
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.75 E-value=5.8e-08 Score=95.62 Aligned_cols=194 Identities=20% Similarity=0.213 Sum_probs=117.0
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|+.|+++++ +++.++.. .+++|+.|++.++ .+.. +|..+ .++|+.|++++| .++.+|.
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~------l~~nL~~L~Ls~N-~Lts-LP~~l---~~~L~~L~Ls~N-~L~~LP~------- 258 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPEN------LQGNIKTLYANSN-QLTS-IPATL---PDTIQEMELSIN-RITELPE------- 258 (754)
T ss_pred cCCcEEEecCC-CCCcCChh------hccCCCEEECCCC-cccc-CChhh---hccccEEECcCC-ccCcCCh-------
Confidence 46888888764 46654332 2468899998886 5665 34332 357888999888 6666643
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh-
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL- 197 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~- 197 (320)
...++|+.|+++++ ++..++... .++|+.|+++++ +++.+|.... .+++.|.
T Consensus 259 -----~l~s~L~~L~Ls~N-~L~~LP~~l-----~~sL~~L~Ls~N-~Lt~LP~~lp---------------~sL~~L~L 311 (754)
T PRK15370 259 -----RLPSALQSLDLFHN-KISCLPENL-----PEELRYLSVYDN-SIRTLPAHLP---------------SGITHLNV 311 (754)
T ss_pred -----hHhCCCCEEECcCC-ccCcccccc-----CCCCcEEECCCC-ccccCcccch---------------hhHHHHHh
Confidence 12257899999865 777665432 358999999886 5665553200 1222221
Q ss_pred -hcccccchHHHhcCCCCCceeccccccCc----cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccC
Q 041021 198 -VANQIHLFDEKLSGLHKVQHLWKENAESN----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLT 272 (320)
Q Consensus 198 -~~~~~~~~~~li~~~~~L~~l~~~~~~~~----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 272 (320)
.+....+|.. -.++|+.+.+.++... ..+++|+.|+++++ +++.+|..+ .++|++|++++| .++.+|.
T Consensus 312 s~N~Lt~LP~~---l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~ 384 (754)
T PRK15370 312 QSNSLTALPET---LPPGLKTLEAGENALTSLPASLPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRN-ALTNLPE 384 (754)
T ss_pred cCCccccCCcc---ccccceeccccCCccccCChhhcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCC-cCCCCCH
Confidence 1222223322 1234555555443221 23468888888887 566666533 468889999886 5777765
Q ss_pred cchhhhccccCEEeEccc
Q 041021 273 LSTSESLVNLERMKITDC 290 (320)
Q Consensus 273 ~~~~~~l~~L~~L~l~~C 290 (320)
. +. .+|+.|+++++
T Consensus 385 ~-l~---~sL~~LdLs~N 398 (754)
T PRK15370 385 N-LP---AALQIMQASRN 398 (754)
T ss_pred h-HH---HHHHHHhhccC
Confidence 2 32 35777777775
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.68 E-value=5.3e-08 Score=95.91 Aligned_cols=200 Identities=14% Similarity=0.112 Sum_probs=124.9
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
+++|++|+++++. ++.++. ...++|+.|.+++| .+.. +|..+ .++|+.|+++++ .++.+|.
T Consensus 219 ~~nL~~L~Ls~N~-LtsLP~------~l~~~L~~L~Ls~N-~L~~-LP~~l---~s~L~~L~Ls~N-~L~~LP~------ 279 (754)
T PRK15370 219 QGNIKTLYANSNQ-LTSIPA------TLPDTIQEMELSIN-RITE-LPERL---PSALQSLDLFHN-KISCLPE------ 279 (754)
T ss_pred ccCCCEEECCCCc-cccCCh------hhhccccEEECcCC-ccCc-CChhH---hCCCCEEECcCC-ccCcccc------
Confidence 3589999998653 655432 12357999999987 4665 44433 358999999876 7777644
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH-
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL- 196 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L- 196 (320)
..+++|+.|+++++ ++..++... .++|+.|+++++ .++.+|.... .+++.|
T Consensus 280 ------~l~~sL~~L~Ls~N-~Lt~LP~~l-----p~sL~~L~Ls~N-~Lt~LP~~l~---------------~sL~~L~ 331 (754)
T PRK15370 280 ------NLPEELRYLSVYDN-SIRTLPAHL-----PSGITHLNVQSN-SLTALPETLP---------------PGLKTLE 331 (754)
T ss_pred ------ccCCCCcEEECCCC-ccccCcccc-----hhhHHHHHhcCC-ccccCCcccc---------------ccceecc
Confidence 12258899999887 676665422 246777777765 3444432100 112211
Q ss_pred -hhcccccchHHHhcCCCCCceeccccccCc----cccCccceEEEccCCCcccccCCccCCCCccEEeecCcccccccc
Q 041021 197 -LVANQIHLFDEKLSGLHKVQHLWKENAESN----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLL 271 (320)
Q Consensus 197 -~~~~~~~~~~~li~~~~~L~~l~~~~~~~~----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 271 (320)
..+....+|.. + +++|+.+.+.++... ..+++|+.|++.+| .++.+|..+ .+.|+.|+++++ +++.+|
T Consensus 332 Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 332 AGENALTSLPAS-L--PPELQVLDVSKNQITVLPETLPPTITTLDVSRN-ALTNLPENL--PAALQIMQASRN-NLVRLP 404 (754)
T ss_pred ccCCccccCChh-h--cCcccEEECCCCCCCcCChhhcCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhccC-CcccCc
Confidence 11222233333 2 256777777654332 34578999999997 677787643 357999999994 677776
Q ss_pred Cc--chhhhccccCEEeEcccc
Q 041021 272 TL--STSESLVNLERMKITDCK 291 (320)
Q Consensus 272 ~~--~~~~~l~~L~~L~l~~C~ 291 (320)
.. .+...++++..+++.+.+
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCC
Confidence 52 123345788999998875
No 12
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.66 E-value=1.5e-09 Score=102.66 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=54.9
Q ss_pred hcCCCCCceeccccccCccccCccc-eEEEccCCCcc-cccCCccCCCCccEEeecCccccccccCcchhhhccccCEEe
Q 041021 209 LSGLHKVQHLWKENAESNKVFANLK-SLEIFECSKLQ-KLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMK 286 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~~~~~~L~-~L~i~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 286 (320)
+..|++++++.+..+. ..... .+.+.+|+.++ .+........+++.|+++.|...+.-........+..+..++
T Consensus 358 ~~~~~~l~~~~l~~~~----~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~ 433 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG----ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLD 433 (482)
T ss_pred HhcCCCcchhhhhhhh----ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCC
Confidence 6677777776665442 12222 46667777773 332223344448999999998887764433333367788899
Q ss_pred Eccccccceeecc
Q 041021 287 ITDCKMMEEIIQS 299 (320)
Q Consensus 287 l~~C~~l~~~~~~ 299 (320)
+.+|+.+......
T Consensus 434 ~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 434 LSGCRVITLKSLE 446 (482)
T ss_pred ccCcccccchhhh
Confidence 9999888776543
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.61 E-value=3.6e-07 Score=89.90 Aligned_cols=52 Identities=25% Similarity=0.165 Sum_probs=31.3
Q ss_pred cCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccc
Q 041021 229 FANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 229 ~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
+++|+.|+++++ .++.+|.. .++|+.|+++++ +++.+|.. ..+|+.|+++++
T Consensus 381 ~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~N 432 (788)
T PRK15387 381 PSGLKELIVSGN-RLTSLPVL---PSELKELMVSGN-RLTSLPML-----PSGLLSLSVYRN 432 (788)
T ss_pred ccccceEEecCC-cccCCCCc---ccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhccC
Confidence 346777777765 55655542 357778888774 46666541 234566666553
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.54 E-value=1.8e-08 Score=97.57 Aligned_cols=136 Identities=21% Similarity=0.168 Sum_probs=80.0
Q ss_pred eEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCcccc
Q 041021 4 NLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSA 83 (320)
Q Consensus 4 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 83 (320)
+++++.|++++.+ -..++.-..+...-++|+.|...+++-.+. .....-.+|++++++.. ++..
T Consensus 192 ~~dls~~~~l~~l--------~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~------~~~p~p~nl~~~dis~n-~l~~- 255 (1081)
T KOG0618|consen 192 VLDLSNLANLEVL--------HCERNQLSELEISGPSLTALYADHNPLTTL------DVHPVPLNLQYLDISHN-NLSN- 255 (1081)
T ss_pred hhhhhhccchhhh--------hhhhcccceEEecCcchheeeeccCcceee------ccccccccceeeecchh-hhhc-
Confidence 4566666666665 122222223444567888888887774422 12233468889988874 6666
Q ss_pred CchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeec
Q 041021 84 IPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIEN 163 (320)
Q Consensus 84 ~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~ 163 (320)
.| +|+..|.+|+.+.+.++ .++.++..-. ...+|+.|.+..| .++.+++.. ..+.+|++|++..
T Consensus 256 lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~----------~~~~L~~l~~~~n-el~yip~~l---e~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 256 LP-EWIGACANLEALNANHN-RLVALPLRIS----------RITSLVSLSAAYN-ELEYIPPFL---EGLKSLRTLDLQS 319 (1081)
T ss_pred ch-HHHHhcccceEecccch-hHHhhHHHHh----------hhhhHHHHHhhhh-hhhhCCCcc---cccceeeeeeehh
Confidence 34 67899999999999887 6666554211 1145666666555 555555522 4456666666654
Q ss_pred CCCCCcccc
Q 041021 164 CPDMETFTS 172 (320)
Q Consensus 164 c~~l~~~~~ 172 (320)
. ++..+|.
T Consensus 320 N-~L~~lp~ 327 (1081)
T KOG0618|consen 320 N-NLPSLPD 327 (1081)
T ss_pred c-cccccch
Confidence 2 3444443
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.51 E-value=7.1e-09 Score=96.60 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=52.4
Q ss_pred chHHHhcCCCCCceeccccccCc------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhh
Q 041021 204 LFDEKLSGLHKVQHLWKENAESN------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSE 277 (320)
Q Consensus 204 ~~~~li~~~~~L~~l~~~~~~~~------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 277 (320)
+|.. +....+|..+.++++.+. ....+|++|++++. .++.+|..+..++.|+.|++.+ ++++.-...+..+
T Consensus 237 vPec-ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 237 VPEC-LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIG 313 (1255)
T ss_pred chHH-HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-CcccccCCccchh
Confidence 4455 667778888888876553 45678899999884 7888888888888888887765 3343322222233
Q ss_pred hccccCEEe
Q 041021 278 SLVNLERMK 286 (320)
Q Consensus 278 ~l~~L~~L~ 286 (320)
.+.+|+++.
T Consensus 314 KL~~Levf~ 322 (1255)
T KOG0444|consen 314 KLIQLEVFH 322 (1255)
T ss_pred hhhhhHHHH
Confidence 444555443
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.44 E-value=2.7e-08 Score=92.79 Aligned_cols=196 Identities=18% Similarity=0.186 Sum_probs=119.8
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+..|++|.+++.| +...... ...++.+|+.|++++-..-..-+|.++ ..+.+|..++++.+ ++..+|+
T Consensus 171 RL~~LqtL~Ls~NP-L~hfQLr---QLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N-~Lp~vPe----- 239 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNP-LNHFQLR---QLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSEN-NLPIVPE----- 239 (1255)
T ss_pred HHhhhhhhhcCCCh-hhHHHHh---cCccchhhhhhhcccccchhhcCCCch-hhhhhhhhcccccc-CCCcchH-----
Confidence 44566666666655 2221111 234566777777776544333345543 77888888888876 6666654
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
. ...+++|+.|++++. +++.+.. .+..+.+|++|.+++. +++.+|.. ..++..+.+|
T Consensus 240 ----c-ly~l~~LrrLNLS~N-~iteL~~---~~~~W~~lEtLNlSrN-QLt~LP~a-------------vcKL~kL~kL 296 (1255)
T KOG0444|consen 240 ----C-LYKLRNLRRLNLSGN-KITELNM---TEGEWENLETLNLSRN-QLTVLPDA-------------VCKLTKLTKL 296 (1255)
T ss_pred ----H-HhhhhhhheeccCcC-ceeeeec---cHHHHhhhhhhccccc-hhccchHH-------------HhhhHHHHHH
Confidence 1 112478888888876 5665555 3456788888888774 46666532 3455566666
Q ss_pred hhc----ccccchHHHhcCCCCCceeccccccCc------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccc
Q 041021 197 LVA----NQIHLFDEKLSGLHKVQHLWKENAESN------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHG 266 (320)
Q Consensus 197 ~~~----~~~~~~~~li~~~~~L~~l~~~~~~~~------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 266 (320)
+.+ .-..+|+. |+.+.+|+.+....+-.+ -.|+.|+.|.+.. +.+..+|..+..++.|+.||+...++
T Consensus 297 y~n~NkL~FeGiPSG-IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSG-IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HhccCcccccCCccc-hhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcC
Confidence 543 23467776 666666666554432211 4566777777664 45666777777777888888877776
Q ss_pred cc
Q 041021 267 LI 268 (320)
Q Consensus 267 l~ 268 (320)
+-
T Consensus 375 LV 376 (1255)
T KOG0444|consen 375 LV 376 (1255)
T ss_pred cc
Confidence 64
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.44 E-value=1.7e-07 Score=83.19 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=60.3
Q ss_pred ccccchHHHhcCCCCCceecccccc-----Cc-cccCccceEEEccCCCcccccC-----------------------C-
Q 041021 200 NQIHLFDEKLSGLHKVQHLWKENAE-----SN-KVFANLKSLEIFECSKLQKLVP-----------------------T- 249 (320)
Q Consensus 200 ~~~~~~~~li~~~~~L~~l~~~~~~-----~~-~~~~~L~~L~i~~c~~l~~l~~-----------------------~- 249 (320)
...+|++..++..++|+.+.++++. .+ ..+..|+.|+++.. .+..+|. .
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHH
Confidence 3444444337777788877776532 22 55667888888865 3333332 2
Q ss_pred ccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 250 SWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 250 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
+.++.+|++||+.+ +.++.+|. ..+++++|++|++.+.+
T Consensus 501 l~nm~nL~tLDL~n-Ndlq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQN-NDLQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhhcceeccCC-CchhhCCh--hhccccceeEEEecCCc
Confidence 35678899999987 56888877 45899999999999976
No 18
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.40 E-value=1.4e-08 Score=96.06 Aligned_cols=121 Identities=18% Similarity=0.192 Sum_probs=81.9
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccC-cCccccC--chhHHhhcccCCeEEEccCcccceecccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDC-TNMSSAI--PANLLWCLNNLAWLEVRNCDSLEEVLHLE 113 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 113 (320)
.+++|++|.+.+|..+.+.+.. .....+++|+.|++.+| ....... .......+++|+.|++..|..+++..-
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-- 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD--ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-- 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHH--HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH--
Confidence 4788999999988888774321 13456789999999873 3322221 233556789999999999976665422
Q ss_pred ccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCC
Q 041021 114 ELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDME 168 (320)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~ 168 (320)
......+++|++|.+.+|..+..-.... ....+++|+++++++|..++
T Consensus 262 ------~~l~~~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 262 ------SALASRCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred ------HHHHhhCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCccch
Confidence 1222235899999988898754433322 34568889999999998763
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.40 E-value=9.5e-08 Score=85.48 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=27.9
Q ss_pred ccCccceEEEccCCCccccc--CCc----cCCCCccEEeecCccccccccCcch---hhhccccCEEeEccc
Q 041021 228 VFANLKSLEIFECSKLQKLV--PTS----WHLENLATLEVSKCHGLINLLTLST---SESLVNLERMKITDC 290 (320)
Q Consensus 228 ~~~~L~~L~i~~c~~l~~l~--~~~----~~~~~L~~L~l~~c~~l~~l~~~~~---~~~l~~L~~L~l~~C 290 (320)
.+++|+.|++++|+ +++.. ... ...+.|++|++++|. +++.....+ ...+++|+.++++++
T Consensus 219 ~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 219 SLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred ccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 45566666666653 33210 000 123567777776653 331111111 122345666666664
No 20
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.33 E-value=2.7e-06 Score=77.30 Aligned_cols=154 Identities=18% Similarity=0.284 Sum_probs=87.6
Q ss_pred cCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccccc
Q 041021 65 FFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFC 144 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 144 (320)
.+.+++.|++++| .+..+ | .-.++|++|.+++|..++.++. ...++|++|++++|.++..++
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~------------~LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-P----VLPNELTEITIENCNNLTTLPG------------SIPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-C----CCCCCCcEEEccCCCCcccCCc------------hhhhhhhheEccCcccccccc
Confidence 3577888888887 56664 3 1234688888888877766543 112578888888877665443
Q ss_pred CCCccccCCCCccEEeeec--CCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceecccc
Q 041021 145 NFTGNIIELPKLEYLIIEN--CPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKEN 222 (320)
Q Consensus 145 ~~~~~~~~l~~L~~l~l~~--c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~ 222 (320)
++|+.|++.. |..+..+|. + |+.|.+.+
T Consensus 112 ---------~sLe~L~L~~n~~~~L~~LPs----------------------------------s-------Lk~L~I~~ 141 (426)
T PRK15386 112 ---------ESVRSLEIKGSATDSIKNVPN----------------------------------G-------LTSLSINS 141 (426)
T ss_pred ---------cccceEEeCCCCCcccccCcc----------------------------------h-------Hhheeccc
Confidence 3466666642 222332222 1 22222211
Q ss_pred ccC-------ccccCccceEEEccCCCcccccCCccCCCCccEEeecCccccc-cccCcchhhhccccCEEeEcccccc
Q 041021 223 AES-------NKVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLI-NLLTLSTSESLVNLERMKITDCKMM 293 (320)
Q Consensus 223 ~~~-------~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~l~~C~~l 293 (320)
+.. ...+++|+.|.|.+|..+. +|.. ...+|++|+++.+...+ .++...++ +++ .|.+.+|-.+
T Consensus 142 ~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n~lkL 213 (426)
T PRK15386 142 YNPENQARIDNLISPSLKTLSLTGCSNII-LPEK--LPESLQSITLHIEQKTTWNISFEGFP---DGL-DIDLQNSVLL 213 (426)
T ss_pred cccccccccccccCCcccEEEecCCCccc-Cccc--ccccCcEEEecccccccccCcccccc---ccc-Eechhhhccc
Confidence 100 0345799999999998653 3332 23699999997753211 23222233 345 7888887544
No 21
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.9e-08 Score=85.85 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCC
Q 041021 67 NNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNF 146 (320)
Q Consensus 67 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 146 (320)
++|++|+++.- .++......+...|.+|+.|.+.+. .+.+-+. ...... .+|+.|+++.|.++......
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~--------~~iAkN-~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIV--------NTIAKN-SNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHH--------HHHhcc-ccceeeccccccccchhHHH
Confidence 35777777662 4444333445677778887777776 4444221 111222 57888888888777665443
Q ss_pred CccccCCCCccEEeeecCCCC
Q 041021 147 TGNIIELPKLEYLIIENCPDM 167 (320)
Q Consensus 147 ~~~~~~l~~L~~l~l~~c~~l 167 (320)
- -..++..|.+|.+++|-..
T Consensus 254 l-l~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 254 L-LLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred H-HHHhhhhHhhcCchHhhcc
Confidence 3 3456777888888887543
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.2e-07 Score=84.83 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=17.8
Q ss_pred cCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccC
Q 041021 65 FFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNC 103 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 103 (320)
.+.+|++..+++|+ +...+.....+.|++.+.|+++.+
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N 156 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN 156 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh
Confidence 35555555555542 222221123455555555555554
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.26 E-value=1.5e-07 Score=84.15 Aligned_cols=213 Identities=17% Similarity=0.103 Sum_probs=116.7
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccc--cC---chhHHhhcccCCeEEEccCcccceecc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSS--AI---PANLLWCLNNLAWLEVRNCDSLEEVLH 111 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~---~~~~~~~l~~L~~L~i~~c~~l~~i~~ 111 (320)
.+++|+.|.+.++.--..-...-+......++|++|.+.++. +.. .. ....+..+++|++|++++|.--...+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 467789999987762111000000113356778888887753 331 00 111234577999999988843222211
Q ss_pred ccccccccCCCCCcCCccCeEeecCCcccccccCC--CccccCC-CCccEEeeecCCCCCccccCccccccccccccccc
Q 041021 112 LEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNF--TGNIIEL-PKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQ 188 (320)
Q Consensus 112 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~l-~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 188 (320)
.. ...... ++|++|++++|. +..-... ...+..+ ++|+++++++|. ++.......
T Consensus 100 ~~------~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~------------- 157 (319)
T cd00116 100 VL------ESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEAL------------- 157 (319)
T ss_pred HH------HHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHH-------------
Confidence 00 011112 459999998874 3210000 0012345 788999998875 221100000
Q ss_pred cccChhHHhhcccccchHHHhcCCCCCceeccccccCc-----------cccCccceEEEccCCCccc-----ccCCccC
Q 041021 189 KLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN-----------KVFANLKSLEIFECSKLQK-----LVPTSWH 252 (320)
Q Consensus 189 ~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----------~~~~~L~~L~i~~c~~l~~-----l~~~~~~ 252 (320)
+.. +..+++|+.+.+.++... ...++|+.|++++|. ++. +......
T Consensus 158 ----------------~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~ 219 (319)
T cd00116 158 ----------------AKA-LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLAS 219 (319)
T ss_pred ----------------HHH-HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcc
Confidence 000 555667777776554321 234589999999884 332 2233456
Q ss_pred CCCccEEeecCccccccccCcchhhhc----cccCEEeEcccc
Q 041021 253 LENLATLEVSKCHGLINLLTLSTSESL----VNLERMKITDCK 291 (320)
Q Consensus 253 ~~~L~~L~l~~c~~l~~l~~~~~~~~l----~~L~~L~l~~C~ 291 (320)
+++|++|++++|+ +++.....++..+ +.|++|++.+|.
T Consensus 220 ~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 220 LKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred cCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 7999999999974 5553333333333 799999999983
No 24
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=1.1e-05 Score=73.53 Aligned_cols=71 Identities=17% Similarity=0.390 Sum_probs=47.1
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++++.|++++| .++.++. .-++|++|.+.+|..+.. .|..+ .++|++|++++|..++.+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-------LP~sLtsL~Lsnc~nLts-LP~~L---P~nLe~L~Ls~Cs~L~sLP------ 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-------LPNELTEITIENCNNLTT-LPGSI---PEGLEKLTVCHCPEISGLP------ 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-------CCCCCcEEEccCCCCccc-CCchh---hhhhhheEccCcccccccc------
Confidence 4678888888887 5665431 113688888888887765 33322 3578888888887665542
Q ss_pred cccCCCCCcCCccCeEeec
Q 041021 117 ADKEHIGPLFPKLSELRLI 135 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~ 135 (320)
++|+.|.+.
T Consensus 112 ----------~sLe~L~L~ 120 (426)
T PRK15386 112 ----------ESVRSLEIK 120 (426)
T ss_pred ----------cccceEEeC
Confidence 467777765
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.13 E-value=1.4e-06 Score=87.40 Aligned_cols=230 Identities=20% Similarity=0.281 Sum_probs=126.8
Q ss_pred eccccccEEeecCCcc-chhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccc
Q 041021 36 IGFRDIKYLQLSHFPR-LQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEE 114 (320)
Q Consensus 36 ~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 114 (320)
..+++|.+|-+.+... +..+..+ -+..+|.|+.|++++|..++. .|.. ++.+-+|++|+++++ .++.+|.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~---ff~~m~~LrVLDLs~~~~l~~-LP~~-I~~Li~LryL~L~~t-~I~~LP~--- 612 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGE---FFRSLPLLRVLDLSGNSSLSK-LPSS-IGELVHLRYLDLSDT-GISHLPS--- 612 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHH---HHhhCcceEEEECCCCCccCc-CChH-HhhhhhhhcccccCC-Cccccch---
Confidence 3556788888776543 2221111 145688999999998888877 4554 378999999999988 7877765
Q ss_pred cccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC-CCCccccCccccccccccccccccccCh
Q 041021 115 LSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP-DMETFTSNSTFVLYMTTDNKEAQKLKSE 193 (320)
Q Consensus 115 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~-~l~~~~~~~~~~~~~~~~~~~~~~l~~l 193 (320)
....|.+|.+|++.....+..++. ....+++|+++.+..-. ......... ...+.++
T Consensus 613 -------~l~~Lk~L~~Lnl~~~~~l~~~~~---i~~~L~~Lr~L~l~~s~~~~~~~~l~e------------l~~Le~L 670 (889)
T KOG4658|consen 613 -------GLGNLKKLIYLNLEVTGRLESIPG---ILLELQSLRVLRLPRSALSNDKLLLKE------------LENLEHL 670 (889)
T ss_pred -------HHHHHHhhheeccccccccccccc---hhhhcccccEEEeeccccccchhhHHh------------hhcccch
Confidence 122357888888888877776633 23458889998886543 110000000 0111111
Q ss_pred hHHhhcc-cccchHHHhcCCCCCc----eeccccc--c----CccccCccceEEEccCCCcccccCC-----ccC-CCCc
Q 041021 194 ENLLVAN-QIHLFDEKLSGLHKVQ----HLWKENA--E----SNKVFANLKSLEIFECSKLQKLVPT-----SWH-LENL 256 (320)
Q Consensus 194 ~~L~~~~-~~~~~~~li~~~~~L~----~l~~~~~--~----~~~~~~~L~~L~i~~c~~l~~l~~~-----~~~-~~~L 256 (320)
+.+.... ...+-.. +...+.|. .+...+. + ....+.+|+.|.|.+|......... ... ++++
T Consensus 671 ~~ls~~~~s~~~~e~-l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 671 ENLSITISSVLLLED-LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred hhheeecchhHhHhh-hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 1110000 0000000 11111111 0010000 0 0167778888888888664322111 112 5677
Q ss_pred cEEeecCccccccccCcchhhhccccCEEeEccccccceeeccc
Q 041021 257 ATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQ 300 (320)
Q Consensus 257 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~ 300 (320)
..+.+.+|..++++.. ....|+|+.|.+.+|+.++++....
T Consensus 750 ~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred HHHHhhccccccccch---hhccCcccEEEEecccccccCCCHH
Confidence 7777777777777643 3344778888888888887776653
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.1e-06 Score=78.90 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=67.5
Q ss_pred eccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCc-hhHHhhcccCCeEEEccCcccceeccccc
Q 041021 36 IGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIP-ANLLWCLNNLAWLEVRNCDSLEEVLHLEE 114 (320)
Q Consensus 36 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 114 (320)
.++.+|++.-+.+++ +...... .....|++++.|+++.. -+.++.+ ..++..+|+|+.|+++.+ .+.....
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~--~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~--- 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIE--EYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFIS--- 189 (505)
T ss_pred hhHHhhhheeecCcc-ccccchh--hhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCcc---
Confidence 367778888887665 2221110 13456888888888863 3344332 345678888888888887 3332211
Q ss_pred cccccCCCCCcCCccCeEeecCCcc-cccccCCCccccCCCCccEEeeecCC
Q 041021 115 LSADKEHIGPLFPKLSELRLIDLPK-LKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 115 ~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
......+++|+.|.++.|.- .+.+.. ....+|+|+.|.+....
T Consensus 190 -----s~~~~~l~~lK~L~l~~CGls~k~V~~---~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 190 -----SNTTLLLSHLKQLVLNSCGLSWKDVQW---ILLTFPSLEVLYLEANE 233 (505)
T ss_pred -----ccchhhhhhhheEEeccCCCCHHHHHH---HHHhCCcHHHhhhhccc
Confidence 12223468888888888842 222211 34557888888777653
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.7e-07 Score=78.17 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=26.3
Q ss_pred cccCccceEEEccCCCccc-ccCCccCCCCccEEeecCccc
Q 041021 227 KVFANLKSLEIFECSKLQK-LVPTSWHLENLATLEVSKCHG 266 (320)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~ 266 (320)
-.++.|++|.++.|..+-- -...+...|+|.+|++.+|-.
T Consensus 335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 4567788888888855421 001235678888999888753
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.97 E-value=7e-06 Score=66.53 Aligned_cols=109 Identities=25% Similarity=0.257 Sum_probs=34.4
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
+.+|+.|+++++. ++.+- ....+++|+.|.+++. .++.+.. .+...+|+|++|+++++ .|.++.....+
T Consensus 41 l~~L~~L~Ls~N~-I~~l~-----~l~~L~~L~~L~L~~N-~I~~i~~-~l~~~lp~L~~L~L~~N-~I~~l~~l~~L-- 109 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKLE-----GLPGLPRLKTLDLSNN-RISSISE-GLDKNLPNLQELYLSNN-KISDLNELEPL-- 109 (175)
T ss_dssp -TT--EEE-TTS---S--T-----T----TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS----SCCCCGGG--
T ss_pred hcCCCEEECCCCC-Ccccc-----CccChhhhhhcccCCC-CCCcccc-chHHhCCcCCEEECcCC-cCCChHHhHHH--
Confidence 4566667666443 33321 1234566777776663 4554322 22245667777777666 55554332211
Q ss_pred ccCCCCCcCCccCeEeecCCccccccc-CCCccccCCCCccEEeeecC
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFC-NFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~l~~L~~l~l~~c 164 (320)
..+|+|+.|++.++|--..-. ... .+..+|+|+.||-...
T Consensus 110 ------~~l~~L~~L~L~~NPv~~~~~YR~~-vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 110 ------SSLPKLRVLSLEGNPVCEKKNYRLF-VIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ------GG-TT--EEE-TT-GGGGSTTHHHH-HHHH-TT-SEETTEET
T ss_pred ------HcCCCcceeeccCCcccchhhHHHH-HHHHcChhheeCCEEc
Confidence 134667777776664321100 000 2334566666655443
No 29
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.97 E-value=1.4e-07 Score=83.86 Aligned_cols=221 Identities=20% Similarity=0.183 Sum_probs=130.3
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccc--
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEE-- 114 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~-- 114 (320)
++..|..|.+++..-.+- + ..++.+..++.|.++.. ++.. .|..+ ..+.+|+.++++.+ .++.+++..+
T Consensus 66 nL~~l~vl~~~~n~l~~l-p----~aig~l~~l~~l~vs~n-~ls~-lp~~i-~s~~~l~~l~~s~n-~~~el~~~i~~~ 136 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQL-P----AAIGELEALKSLNVSHN-KLSE-LPEQI-GSLISLVKLDCSSN-ELKELPDSIGRL 136 (565)
T ss_pred cccceeEEEeccchhhhC-C----HHHHHHHHHHHhhcccc-hHhh-ccHHH-hhhhhhhhhhcccc-ceeecCchHHHH
Confidence 567777788776543222 2 12334455666666552 3444 33322 45666666666665 4444433211
Q ss_pred --ccc-------ccCCC--CCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCcccccccccc
Q 041021 115 --LSA-------DKEHI--GPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTD 183 (320)
Q Consensus 115 --~~~-------~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~ 183 (320)
+.+ ..+.+ ...+.+|..+.+.+. +++.+++.. ..++.|++++... ..++.+|..
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~---i~m~~L~~ld~~~-N~L~tlP~~---------- 201 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENH---IAMKRLKHLDCNS-NLLETLPPE---------- 201 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHH---HHHHHHHhcccch-hhhhcCChh----------
Confidence 000 00000 111245555555554 555555532 3377777776644 235556543
Q ss_pred ccccccccChhHHh--hcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCC
Q 041021 184 NKEAQKLKSEENLL--VANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLE 254 (320)
Q Consensus 184 ~~~~~~l~~l~~L~--~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~ 254 (320)
...+.+++.|+ .+....+|+ |.+|..|+.+..+...++ ..++++..|++.+. ++++.|..+..+.
T Consensus 202 ---lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLr 275 (565)
T KOG0472|consen 202 ---LGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLR 275 (565)
T ss_pred ---hcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhh
Confidence 23444555543 345666774 888999998887765543 57888999999884 8999999888899
Q ss_pred CccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 255 NLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 255 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
+|++||+++ +.|+.+|.. .+++ +|+.|.+.|.|
T Consensus 276 sL~rLDlSN-N~is~Lp~s--Lgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 276 SLERLDLSN-NDISSLPYS--LGNL-HLKFLALEGNP 308 (565)
T ss_pred hhhhhcccC-CccccCCcc--cccc-eeeehhhcCCc
Confidence 999999998 567777653 2455 77777777654
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=2.4e-05 Score=51.82 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred CCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCC
Q 041021 67 NNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDL 137 (320)
Q Consensus 67 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c 137 (320)
|+|++|.+++| .+..+.+ ..+..+++|++|+++++ .++.+++ ..+ ..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N-~l~~i~~--------~~f-~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNN-NLTSIPP--------DAF-SNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSS-SESEEET--------TTT-TTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCC-ccCccCH--------HHH-cCCCCCCEEeCcCC
Confidence 35566666665 4555332 23456666666666655 5555543 111 12356666666554
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.87 E-value=7.3e-07 Score=70.56 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=60.4
Q ss_pred cCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccccc
Q 041021 65 FFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFC 144 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 144 (320)
.+++.+.|.++.. +++.++| . +..+.+|+.|++.++ .++++|. ....+++|+.|++. +.++..++
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vpp-n-ia~l~nlevln~~nn-qie~lp~----------~issl~klr~lnvg-mnrl~~lp 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPP-N-IAELKNLEVLNLSNN-QIEELPT----------SISSLPKLRILNVG-MNRLNILP 95 (264)
T ss_pred chhhhhhhhcccC-ceeecCC-c-HHHhhhhhhhhcccc-hhhhcCh----------hhhhchhhhheecc-hhhhhcCc
Confidence 4567778888874 6766555 3 478999999999988 8888754 22345889999886 55777777
Q ss_pred CCCccccCCCCccEEeeecC
Q 041021 145 NFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 145 ~~~~~~~~l~~L~~l~l~~c 164 (320)
.+. +++|.|+.+++...
T Consensus 96 rgf---gs~p~levldltyn 112 (264)
T KOG0617|consen 96 RGF---GSFPALEVLDLTYN 112 (264)
T ss_pred ccc---CCCchhhhhhcccc
Confidence 644 77999999998764
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=4.4e-05 Score=50.49 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=48.8
Q ss_pred ccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 93 NNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 93 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
|+|++|++++| .++.++. ..+. .+++|++|+++++ ++..+++.. +..+++|+++++++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~--------~~f~-~l~~L~~L~l~~N-~l~~i~~~~--f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP--------DSFS-NLPNLETLDLSNN-NLTSIPPDA--FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECT--------TTTT-TGTTESEEEETSS-SESEEETTT--TTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCH--------HHHc-CCCCCCEeEccCC-ccCccCHHH--HcCCCCCCEEeCcCCc
Confidence 57999999999 9999875 2223 4599999999976 788887754 6789999999998874
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.76 E-value=2.8e-05 Score=78.24 Aligned_cols=204 Identities=21% Similarity=0.230 Sum_probs=113.5
Q ss_pred eeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccc
Q 041021 35 KIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEE 114 (320)
Q Consensus 35 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 114 (320)
...+|.|..|+++++..+..++. ..+.+-+|++|++.++ .+.. .|.. ++++..|.+|++..+..+..++.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t-~I~~-LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~--- 636 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDT-GISH-LPSG-LGNLKKLIYLNLEVTGRLESIPG--- 636 (889)
T ss_pred HhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCC-Cccc-cchH-HHHHHhhheeccccccccccccc---
Confidence 55689999999999888777533 2466889999999986 6776 4554 48999999999998876666522
Q ss_pred cccccCCCCCcCCccCeEeecCCc-ccccccCCCccccCCCCccEEeeecCCC--CCccccCcccccccccccccccccc
Q 041021 115 LSADKEHIGPLFPKLSELRLIDLP-KLKRFCNFTGNIIELPKLEYLIIENCPD--METFTSNSTFVLYMTTDNKEAQKLK 191 (320)
Q Consensus 115 ~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~~l~~L~~l~l~~c~~--l~~~~~~~~~~~~~~~~~~~~~~l~ 191 (320)
....+++|++|.+..-. ........ ....+.+|+.+.+..+.. +..+ . .... +.
T Consensus 637 -------i~~~L~~Lr~L~l~~s~~~~~~~~l~--el~~Le~L~~ls~~~~s~~~~e~l--~-~~~~-----------L~ 693 (889)
T KOG4658|consen 637 -------ILLELQSLRVLRLPRSALSNDKLLLK--ELENLEHLENLSITISSVLLLEDL--L-GMTR-----------LR 693 (889)
T ss_pred -------hhhhcccccEEEeeccccccchhhHH--hhhcccchhhheeecchhHhHhhh--h-hhHH-----------HH
Confidence 22235899999887442 11111111 234466666666655432 0111 0 0000 00
Q ss_pred ChhHHhhcccccchHHH--hcCCCCCceeccccccCc------------cc-cCccceEEEccCCCcccccCCccCCCCc
Q 041021 192 SEENLLVANQIHLFDEK--LSGLHKVQHLWKENAESN------------KV-FANLKSLEIFECSKLQKLVPTSWHLENL 256 (320)
Q Consensus 192 ~l~~L~~~~~~~~~~~l--i~~~~~L~~l~~~~~~~~------------~~-~~~L~~L~i~~c~~l~~l~~~~~~~~~L 256 (320)
++..-........+... +..+.+|+.+.+.++... .. ++++..+.+.+|..+++.. +....++|
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-~~~f~~~L 772 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT-WLLFAPHL 772 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc-hhhccCcc
Confidence 00000000000111000 444555555555444321 11 4566666666776665542 22356777
Q ss_pred cEEeecCccccccccC
Q 041021 257 ATLEVSKCHGLINLLT 272 (320)
Q Consensus 257 ~~L~l~~c~~l~~l~~ 272 (320)
++|++.+|+.++++..
T Consensus 773 ~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 773 TSLSLVSCRLLEDIIP 788 (889)
T ss_pred cEEEEecccccccCCC
Confidence 7777777777776643
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.75 E-value=1.9e-05 Score=64.05 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=39.4
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
+...+++|+++++. +..+-. -...+.+|+.|+++++ .+..+.. +..+++|++|+++++ .|+.+.+
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie~----L~~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i~~----- 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIEN----LGATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSISE----- 81 (175)
T ss_dssp --------------------S------TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CH-----
T ss_pred cccccccccccccc-cccccc----hhhhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCcccc-----
Confidence 44578999998765 443211 1124789999999997 5666443 467999999999999 7877632
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
.....+|+|++|++++. ++..+.... ....+|+|+.+++.+.|
T Consensus 82 ----~l~~~lp~L~~L~L~~N-~I~~l~~l~-~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 82 ----GLDKNLPNLQELYLSNN-KISDLNELE-PLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp ----HHHHH-TT--EEE-TTS----SCCCCG-GGGG-TT--EEE-TT-G
T ss_pred ----chHHhCCcCCEEECcCC-cCCChHHhH-HHHcCCCcceeeccCCc
Confidence 11124699999999977 666665544 56779999999998877
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.71 E-value=2.7e-05 Score=76.14 Aligned_cols=225 Identities=19% Similarity=0.207 Sum_probs=113.4
Q ss_pred ccccEEeecCC--ccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 39 RDIKYLQLSHF--PRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 39 ~~L~~L~l~~~--~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+|+.+++++. .++.+ |.+. +.+|+.|.+... .+.. .|..+ ....+|+.|.+..| .++++++..
T Consensus 241 ~nl~~~dis~n~l~~lp~-wi~~------~~nle~l~~n~N-~l~~-lp~ri-~~~~~L~~l~~~~n-el~yip~~l--- 306 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPE-WIGA------CANLEALNANHN-RLVA-LPLRI-SRITSLVSLSAAYN-ELEYIPPFL--- 306 (1081)
T ss_pred ccceeeecchhhhhcchH-HHHh------cccceEecccch-hHHh-hHHHH-hhhhhHHHHHhhhh-hhhhCCCcc---
Confidence 36888887652 23332 5544 788888887763 4544 33333 46778888888887 777776522
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCC-CccEEeeecCCCCCccccCc------c-----ccccccccc
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELP-KLEYLIIENCPDMETFTSNS------T-----FVLYMTTDN 184 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~-~L~~l~l~~c~~l~~~~~~~------~-----~~~~~~~~~ 184 (320)
..+++|++|+++.. ++..++... ....+ +|+.+..+ |.++...+... + +..+..+..
T Consensus 307 -------e~~~sL~tLdL~~N-~L~~lp~~~--l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 307 -------EGLKSLRTLDLQSN-NLPSLPDNF--LAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred -------cccceeeeeeehhc-cccccchHH--HhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCcccccc
Confidence 23477888888765 555554311 00011 12222221 11222222100 0 000000000
Q ss_pred -cccccccChhH--HhhcccccchHHHhcCCCCCceeccccccCc------cccCccceEEEccCCCcccccCCccCCCC
Q 041021 185 -KEAQKLKSEEN--LLVANQIHLFDEKLSGLHKVQHLWKENAESN------KVFANLKSLEIFECSKLQKLVPTSWHLEN 255 (320)
Q Consensus 185 -~~~~~l~~l~~--L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~ 255 (320)
-....+..++- |.++....||.+.+.++..|+++.++|+.-. ..++.|++|...+ +.+..+| ....++.
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQ 453 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCc
Confidence 00111111211 1234445566544666667777777765322 5666666665544 2455554 5566777
Q ss_pred ccEEeecCccccccccCcchhhhccccCEEeEccccc
Q 041021 256 LATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKM 292 (320)
Q Consensus 256 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~ 292 (320)
|+.+|++. +.|+.+......-. |+|++||++|..+
T Consensus 454 L~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 454 LKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 77777764 56666533221111 5777777777654
No 36
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.67 E-value=2.1e-06 Score=68.01 Aligned_cols=150 Identities=19% Similarity=0.199 Sum_probs=86.4
Q ss_pred hcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCcc
Q 041021 91 CLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETF 170 (320)
Q Consensus 91 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~ 170 (320)
.++++..|.++++ .++.+++ ....+.+|+.|++.+. .++.++. .+.++|+|+.+.+. ..++..+
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vpp----------nia~l~nlevln~~nn-qie~lp~---~issl~klr~lnvg-mnrl~~l 94 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPP----------NIAELKNLEVLNLSNN-QIEELPT---SISSLPKLRILNVG-MNRLNIL 94 (264)
T ss_pred chhhhhhhhcccC-ceeecCC----------cHHHhhhhhhhhcccc-hhhhcCh---hhhhchhhhheecc-hhhhhcC
Confidence 5677888899998 7777755 2234589999999987 7888887 56889999999885 3455555
Q ss_pred ccCccccccccccccccccccChhHH---hh-cccccchHHHhcCCCCCceecccc--ccC---c-cccCccceEEEccC
Q 041021 171 TSNSTFVLYMTTDNKEAQKLKSEENL---LV-ANQIHLFDEKLSGLHKVQHLWKEN--AES---N-KVFANLKSLEIFEC 240 (320)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~l~~L---~~-~~~~~~~~~li~~~~~L~~l~~~~--~~~---~-~~~~~L~~L~i~~c 240 (320)
|-+ ..+++-++-| +. -....+|.. +-.++-|.-+.+++ |+. + ..+++|+.|.+.+.
T Consensus 95 prg-------------fgs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 95 PRG-------------FGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ccc-------------cCCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 543 1122222211 00 012233332 22222233333332 221 1 56666666666664
Q ss_pred CCcccccCCccCCCCccEEeecCccccccccC
Q 041021 241 SKLQKLVPTSWHLENLATLEVSKCHGLINLLT 272 (320)
Q Consensus 241 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 272 (320)
.+-++|..++.++.|+.|+|.+ ++++-+|+
T Consensus 161 -dll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 161 -DLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred -chhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 4445666666677777777776 44555544
No 37
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=1.9e-05 Score=77.49 Aligned_cols=110 Identities=16% Similarity=0.272 Sum_probs=68.7
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
.+|+.|+|++......-|... .+..+|+|++|.+.+- .+.......+..++|+|..|||+++ +++.+...
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~k--ig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GI------ 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKK--IGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLSGI------ 191 (699)
T ss_pred HhhhhcCccccchhhccHHHH--HhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcHHH------
Confidence 578888888866555556543 3456888888888774 3322223344567888888888888 77766321
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
..+++|+.|.+.+++ ++...... .+..+.+|+.||+++-.
T Consensus 192 -----S~LknLq~L~mrnLe-~e~~~~l~-~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 192 -----SRLKNLQVLSMRNLE-FESYQDLI-DLFNLKKLRVLDISRDK 231 (699)
T ss_pred -----hccccHHHHhccCCC-CCchhhHH-HHhcccCCCeeeccccc
Confidence 134777777777663 32222222 35567778888777643
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.44 E-value=1.7e-05 Score=70.60 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=18.0
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSS 82 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 82 (320)
+++|++|+|++.. +..|-.. .+..+++|..|.+.+..++++
T Consensus 90 l~~LRrLdLS~N~-Is~I~p~---AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 90 LHRLRRLDLSKNN-ISFIAPD---AFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred hhhhceecccccc-hhhcChH---hhhhhHhhhHHHhhcCCchhh
Confidence 5666666665432 3332111 133344444444444334444
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=3.6e-05 Score=75.54 Aligned_cols=125 Identities=21% Similarity=0.259 Sum_probs=69.3
Q ss_pred hcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccc-ccCCCccccCCCCccEEeeecCCCCCc
Q 041021 91 CLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKR-FCNFTGNIIELPKLEYLIIENCPDMET 169 (320)
Q Consensus 91 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~l~~L~~l~l~~c~~l~~ 169 (320)
.-.+|++|+|++-..+.. .+....+..||+|++|.+.+-.-... +.. .-.++|+|..||+++++ ++.
T Consensus 120 sr~nL~~LdI~G~~~~s~--------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~---lc~sFpNL~sLDIS~Tn-I~n 187 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSN--------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQ---LCASFPNLRSLDISGTN-ISN 187 (699)
T ss_pred HHHhhhhcCccccchhhc--------cHHHHHhhhCcccceEEecCceecchhHHH---HhhccCccceeecCCCC-ccC
Confidence 346778888876433321 11123344678888888876432211 111 23457888888888864 443
Q ss_pred cccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCc--------cccCccceEEEccCC
Q 041021 170 FTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN--------KVFANLKSLEIFECS 241 (320)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~--------~~~~~L~~L~i~~c~ 241 (320)
+.. ++++++|+.|.+++.+.+ -.+++|+.|+|+.-.
T Consensus 188 l~G------------------------------------IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 188 LSG------------------------------------ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cHH------------------------------------HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 311 445555555544443222 466778888888654
Q ss_pred Ccccc------cCCccCCCCccEEeecC
Q 041021 242 KLQKL------VPTSWHLENLATLEVSK 263 (320)
Q Consensus 242 ~l~~l------~~~~~~~~~L~~L~l~~ 263 (320)
+...- ..+-..+|+|+.||.|+
T Consensus 232 ~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 232 NNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cccchHHHHHHHHhcccCccccEEecCC
Confidence 43221 01224588888888885
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.31 E-value=2.1e-05 Score=70.08 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=45.2
Q ss_pred eccc-cccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecc
Q 041021 36 IGFR-DIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLH 111 (320)
Q Consensus 36 ~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 111 (320)
.++| .-.++.+. -++++.++.+. +..+++|++|++++. .+..+.|.. ++.+++|.+|.+.+...|++++.
T Consensus 63 ~~LP~~tveirLd-qN~I~~iP~~a---F~~l~~LRrLdLS~N-~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 63 ANLPPETVEIRLD-QNQISSIPPGA---FKTLHRLRRLDLSKN-NISFIAPDA-FKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred ccCCCcceEEEec-cCCcccCChhh---ccchhhhceeccccc-chhhcChHh-hhhhHhhhHHHhhcCCchhhhhh
Confidence 3444 45556665 33455555443 667788888888873 566655554 47788888888777667877765
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.95 E-value=0.00035 Score=60.39 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=34.1
Q ss_pred cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccc
Q 041021 227 KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
+.+++|+.|++++. .++.+..+...+.+.++|.+++ +.|+++.. ...+-+|..||+.+.
T Consensus 326 a~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSG---L~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 326 AELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETLSG---LRKLYSLVNLDLSSN 384 (490)
T ss_pred hhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhhhh---hHhhhhheecccccc
Confidence 56666777777663 5555554444566666666666 44555522 234456666666654
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.82 E-value=0.0019 Score=39.54 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=22.9
Q ss_pred ccceEEEccCCCcccccCCccCCCCccEEeecCccccccc
Q 041021 231 NLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINL 270 (320)
Q Consensus 231 ~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 270 (320)
+|+.|++.++ +++++++.+..+++|+.|+++++ .++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 5666666665 56666655566777777777765 35554
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.49 E-value=0.006 Score=37.25 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=26.9
Q ss_pred CCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecc
Q 041021 67 NNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLH 111 (320)
Q Consensus 67 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 111 (320)
++|++|++.++ .+.++.+ . +..+++|++|++++| .+++++.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~-l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-E-LSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-H-GTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCC-CCcccCc-h-HhCCCCCCEEEecCC-CCCCCcC
Confidence 46788888876 5666433 2 477888888888888 6766643
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.41 E-value=0.0032 Score=58.16 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=14.4
Q ss_pred ccCccceEEEccCCCcccccCCccCCCCccEEeecC
Q 041021 228 VFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSK 263 (320)
Q Consensus 228 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~ 263 (320)
.++.++.|++.++ .+++++. .....+++.|++++
T Consensus 253 ~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 253 NLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred cccccceeccccc-ccccccc-ccccCccCEEeccC
Confidence 3334444444443 3333332 33444444444444
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.12 E-value=0.00092 Score=57.90 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=22.6
Q ss_pred CccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 127 PKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 127 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
=+|..|++++. ++..+.... .++++|.|+.+.+.+.|
T Consensus 374 YSLvnLDl~~N-~Ie~ldeV~-~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 374 YSLVNLDLSSN-QIEELDEVN-HIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhheecccccc-chhhHHHhc-ccccccHHHHHhhcCCC
Confidence 35566666654 455554444 56677777777776655
No 46
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.0017 Score=52.98 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=45.3
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
..+++++.|.+.+|.++.+.-...+.+..++|+.|+|++|+.|++-.. .. ...|++|+.|.+.+++.+...
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL--------~~-L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL--------AC-LLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--------HH-HHHhhhhHHHHhcCchhhhch
Confidence 456777777777777777655444545667888888888877776321 11 113577777777777655443
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.91 E-value=0.0022 Score=56.61 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=53.6
Q ss_pred hcCCCCCceeccccccCc-----------cccCccceEEEccCCCcccccC------CccCCCCccEEeecCcccccccc
Q 041021 209 LSGLHKVQHLWKENAESN-----------KVFANLKSLEIFECSKLQKLVP------TSWHLENLATLEVSKCHGLINLL 271 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-----------~~~~~L~~L~i~~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~l~ 271 (320)
+..|+.|+.+.++++.-. ..+++|+.|++++| .+..-.. .....|+|+.|.+.+|. |+.-.
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da 286 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDA 286 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch-hHHHH
Confidence 888999999888764321 57778999999999 3333211 11347899999999864 33221
Q ss_pred Cc----chhhhccccCEEeEccccc
Q 041021 272 TL----STSESLVNLERMKITDCKM 292 (320)
Q Consensus 272 ~~----~~~~~l~~L~~L~l~~C~~ 292 (320)
.. ++. ..|.|..|++.+|.-
T Consensus 287 ~~~la~~~~-ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 287 ALALAACMA-EKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHh-cchhhHHhcCCcccc
Confidence 11 222 368899999988754
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.85 E-value=0.0099 Score=54.92 Aligned_cols=166 Identities=23% Similarity=0.305 Sum_probs=86.6
Q ss_pred cCCCccEEeeccCcCccccCchhHHhhc-ccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 65 FFNNLAQLVVDDCTNMSSAIPANLLWCL-NNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
.++.++.|.+.+- .+..+.+. .... ++|++|+++++ .+..++. ....+++|+.|+++++ .+..+
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~N-~i~~l~~----------~~~~l~~L~~L~l~~N-~l~~l 178 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSDN-KIESLPS----------PLRNLPNLKNLDLSFN-DLSDL 178 (394)
T ss_pred cccceeEEecCCc-ccccCccc--cccchhhccccccccc-chhhhhh----------hhhccccccccccCCc-hhhhh
Confidence 3456777776653 45553332 2344 27777777777 5665531 1123477777777776 55555
Q ss_pred cCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccc
Q 041021 144 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENA 223 (320)
Q Consensus 144 ~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~ 223 (320)
+... ...++|+.+++++. +++.++.. +.....|+.+++.+.
T Consensus 179 ~~~~---~~~~~L~~L~ls~N-~i~~l~~~-----------------------------------~~~~~~L~~l~~~~N 219 (394)
T COG4886 179 PKLL---SNLSNLNNLDLSGN-KISDLPPE-----------------------------------IELLSALEELDLSNN 219 (394)
T ss_pred hhhh---hhhhhhhheeccCC-ccccCchh-----------------------------------hhhhhhhhhhhhcCC
Confidence 5421 24677777777664 45544432 111222333333222
Q ss_pred c-Cc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcc
Q 041021 224 E-SN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITD 289 (320)
Q Consensus 224 ~-~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 289 (320)
. .. ..+..+..+.+.+ ..++.++.....+++++.|++++ +.+++++. ...+.+++.|++++
T Consensus 220 ~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 220 SIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred cceecchhhhhcccccccccCC-ceeeeccchhccccccceecccc-cccccccc---ccccCccCEEeccC
Confidence 1 00 2333344444222 23333334445667788888877 45666644 34557777777766
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.0021 Score=52.50 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=50.9
Q ss_pred cccCccceEEEccCCCcccccC--CccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccccc
Q 041021 227 KVFANLKSLEIFECSKLQKLVP--TSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMM 293 (320)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l 293 (320)
..+++++.|++.+|..+.+... .....++|+.|+|++|+.||+-.. +....+++|+.|.+.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhh
Confidence 5677888899999988766321 123678999999999999998744 45667899999999887655
No 50
>PLN03150 hypothetical protein; Provisional
Probab=95.52 E-value=0.032 Score=54.79 Aligned_cols=108 Identities=16% Similarity=0.075 Sum_probs=59.3
Q ss_pred cccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccc-eeccccccccc
Q 041021 40 DIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLE-EVLHLEELSAD 118 (320)
Q Consensus 40 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~-~i~~~~~~~~~ 118 (320)
.++.|++.++. +..... .....+++|+.|+++++ .+...+|.. +..+++|+.|++++| .+. .+|.
T Consensus 419 ~v~~L~L~~n~-L~g~ip---~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~------- 484 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIP---NDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPE------- 484 (623)
T ss_pred EEEEEECCCCC-ccccCC---HHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCC-CCCCCCch-------
Confidence 36667776543 221111 12345778888888876 454445544 377888888888887 444 3322
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCC
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPD 166 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~ 166 (320)
....+++|+.|+++++.--..+|... ...+.++..+++.+++.
T Consensus 485 ---~l~~L~~L~~L~Ls~N~l~g~iP~~l--~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 485 ---SLGQLTSLRILNLNGNSLSGRVPAAL--GGRLLHRASFNFTDNAG 527 (623)
T ss_pred ---HHhcCCCCCEEECcCCcccccCChHH--hhccccCceEEecCCcc
Confidence 11234788888888774333443311 01123455666665543
No 51
>PLN03150 hypothetical protein; Provisional
Probab=95.31 E-value=0.04 Score=54.13 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=61.7
Q ss_pred chHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchh
Q 041021 204 LFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTS 276 (320)
Q Consensus 204 ~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 276 (320)
+|.. +..+++|+.+.+.++... ..+++|+.|+++++.-...+|..+..+++|+.|+++++.--..+|. .+.
T Consensus 434 ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~ 511 (623)
T PLN03150 434 IPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALG 511 (623)
T ss_pred CCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHh
Confidence 4444 778888888888664321 6778899999998855556777778899999999998764445554 233
Q ss_pred hhccccCEEeEccccccc
Q 041021 277 ESLVNLERMKITDCKMME 294 (320)
Q Consensus 277 ~~l~~L~~L~l~~C~~l~ 294 (320)
....++..+++.+++.+.
T Consensus 512 ~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 512 GRLLHRASFNFTDNAGLC 529 (623)
T ss_pred hccccCceEEecCCcccc
Confidence 333456777777765543
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.24 E-value=0.057 Score=44.40 Aligned_cols=90 Identities=24% Similarity=0.300 Sum_probs=50.7
Q ss_pred CccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccc
Q 041021 63 VSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKR 142 (320)
Q Consensus 63 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 142 (320)
...+++|..|.+.+. .+..+.|. +...+++|+.|.+.++ +|..+.+.+. -..+|+|++|.+.+.+--..
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~p--------La~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDP--------LASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred CCCccccceEEecCC-cceeeccc-hhhhccccceEEecCc-chhhhhhcch--------hccCCccceeeecCCchhcc
Confidence 445677777777763 56664443 4466777888888877 6665544322 12357888887776542110
Q ss_pred c-cCCCccccCCCCccEEeeecC
Q 041021 143 F-CNFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 143 ~-~~~~~~~~~l~~L~~l~l~~c 164 (320)
- .... .+-.+|+|+.||+.+.
T Consensus 129 ~~YR~y-vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 129 KNYRLY-VLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCceeE-EEEecCcceEeehhhh
Confidence 0 0011 2334677777776553
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=0.066 Score=46.68 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=7.7
Q ss_pred CCCccEEeeecCC
Q 041021 153 LPKLEYLIIENCP 165 (320)
Q Consensus 153 l~~L~~l~l~~c~ 165 (320)
+|++..+-+-.||
T Consensus 198 Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP 210 (418)
T ss_pred cccchheeeecCc
Confidence 5666666665554
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.15 E-value=0.0094 Score=52.71 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=46.9
Q ss_pred hcCCCCCceeccccccCc-----------cccCccceEEEccCCCcccc----cCCccCCCCccEEeecCccccccccCc
Q 041021 209 LSGLHKVQHLWKENAESN-----------KVFANLKSLEIFECSKLQKL----VPTSWHLENLATLEVSKCHGLINLLTL 273 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-----------~~~~~L~~L~i~~c~~l~~l----~~~~~~~~~L~~L~l~~c~~l~~l~~~ 273 (320)
++.++.|+.+.+..+.+. ..+++|+.|++.+...-..- ...+..+++|+.|++.+|. +++-...
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~ 259 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAI 259 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHH
Confidence 556666776665432221 67788888888875332211 1123456788888888874 3222111
Q ss_pred ----chhhhccccCEEeEcccc
Q 041021 274 ----STSESLVNLERMKITDCK 291 (320)
Q Consensus 274 ----~~~~~l~~L~~L~l~~C~ 291 (320)
++-...|+|+++.+.+|.
T Consensus 260 a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHhccCCCCceeccCcch
Confidence 233445788888877763
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.97 E-value=0.14 Score=42.18 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=53.3
Q ss_pred cccCccceEEEccCCCcccccCCc-cCCCCccEEeecCccccccccCcchhhhccccCEEeEccccccc-eeeccccccc
Q 041021 227 KVFANLKSLEIFECSKLQKLVPTS-WHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMME-EIIQSQVGEE 304 (320)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~-~~~~~~~~~~ 304 (320)
..++.|.+|.+.+. .++.+.+.+ ..+|+|+.|.+.+ +.|+.+....-...||.|++|.+-+.+--. ...+.
T Consensus 61 p~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~----- 133 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL----- 133 (233)
T ss_pred CCccccceEEecCC-cceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCchhcccCcee-----
Confidence 67778888888874 677776655 3567899999988 445555443434567788877776653110 01111
Q ss_pred ccceeEecccceeec
Q 041021 305 AEDCIVFRKLECLGL 319 (320)
Q Consensus 305 ~~~~~~~~~L~~L~l 319 (320)
-....+|+|+.|+.
T Consensus 134 -yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 134 -YVLYKLPSLRTLDF 147 (233)
T ss_pred -EEEEecCcceEeeh
Confidence 13456788887765
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.58 E-value=0.5 Score=35.68 Aligned_cols=102 Identities=12% Similarity=0.178 Sum_probs=46.9
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
+++|+.+.+.. .++.+... .+..+++|+.+.+.+ .+..+. ...+..+++|+.+.+.+ .+..++.
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~---~F~~~~~l~~i~~~~--~~~~i~-~~~F~~~~~l~~i~~~~--~~~~i~~------ 74 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGEN---AFSNCTSLKSINFPN--NLTSIG-DNAFSNCKSLESITFPN--NLKSIGD------ 74 (129)
T ss_dssp -TT--EEEETS--T--EE-TT---TTTT-TT-SEEEESS--TTSCE--TTTTTT-TT-EEEEETS--TT-EE-T------
T ss_pred CCCCCEEEECC--CeeEeChh---hcccccccccccccc--cccccc-eeeeecccccccccccc--ccccccc------
Confidence 56788888763 34443332 356677888888875 355533 33356777788888864 4555533
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeec
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIEN 163 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~ 163 (320)
.... ..++|+.+.+.. ++..+.... ..+. +|+.+.+..
T Consensus 75 --~~F~-~~~~l~~i~~~~--~~~~i~~~~--f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 75 --NAFS-NCTNLKNIDIPS--NITEIGSSS--FSNC-NLKEINIPS 112 (129)
T ss_dssp --TTTT-T-TTECEEEETT--T-BEEHTTT--TTT--T--EEE-TT
T ss_pred --cccc-ccccccccccCc--cccEEchhh--hcCC-CceEEEECC
Confidence 1111 236788888753 344444332 3334 666666543
No 57
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.49 E-value=0.03 Score=29.81 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=13.5
Q ss_pred CCCccEEeecCcccccccc
Q 041021 253 LENLATLEVSKCHGLINLL 271 (320)
Q Consensus 253 ~~~L~~L~l~~c~~l~~l~ 271 (320)
+++|++|++++|+++++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4677777777777777653
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.99 E-value=0.076 Score=25.11 Aligned_cols=11 Identities=45% Similarity=0.607 Sum_probs=4.1
Q ss_pred CccEEeecCcc
Q 041021 255 NLATLEVSKCH 265 (320)
Q Consensus 255 ~L~~L~l~~c~ 265 (320)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444443
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.82 E-value=0.034 Score=47.30 Aligned_cols=60 Identities=27% Similarity=0.252 Sum_probs=25.6
Q ss_pred cCccceEEEccCCCcccccC--CccCCCCccEEeecCccccccccCc--chhhhccccCEEeEccc
Q 041021 229 FANLKSLEIFECSKLQKLVP--TSWHLENLATLEVSKCHGLINLLTL--STSESLVNLERMKITDC 290 (320)
Q Consensus 229 ~~~L~~L~i~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~l~~L~~L~l~~C 290 (320)
+|+|+++++++. +++.+.. .+..+.+|..|++..|+-.. +-.. .++..+++|+.|+-.++
T Consensus 90 ~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 90 APNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred CCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 355555555553 3332111 12334455555555554332 1111 23344455555555444
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=0.0044 Score=53.25 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=58.9
Q ss_pred cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccccccceeeccccccccc
Q 041021 227 KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAE 306 (320)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~ 306 (320)
..++.|+.|.++- ++++.+.+ +..|++|++|++.. +.|.++......+++|+|++|.|...|.-.+.-... ..+
T Consensus 38 ~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nY---R~~ 111 (388)
T KOG2123|consen 38 EKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNY---RRK 111 (388)
T ss_pred HhcccceeEEeec-cccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhH---HHH
Confidence 5677788887775 35665533 35789999999987 557777776778899999999999877662221100 003
Q ss_pred ceeEecccceee
Q 041021 307 DCIVFRKLECLG 318 (320)
Q Consensus 307 ~~~~~~~L~~L~ 318 (320)
..-++|+|+.|+
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 455788888775
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.64 E-value=0.055 Score=46.07 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=6.1
Q ss_pred hcccCCeEEEccC
Q 041021 91 CLNNLAWLEVRNC 103 (320)
Q Consensus 91 ~l~~L~~L~i~~c 103 (320)
.+++|+.|.++.+
T Consensus 63 ~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 63 KLPKLKKLELSDN 75 (260)
T ss_pred CcchhhhhcccCC
Confidence 3444444444444
No 62
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.55 E-value=0.01 Score=55.89 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=83.0
Q ss_pred cCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccccc
Q 041021 65 FFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFC 144 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 144 (320)
.|..|+.+.+... .+.. .|.. +..+..|.+|+++.+ .+..+|..- ++--|+.|-+++. +++.++
T Consensus 96 ~f~~Le~liLy~n-~~r~-ip~~-i~~L~~lt~l~ls~N-qlS~lp~~l-----------C~lpLkvli~sNN-kl~~lp 159 (722)
T KOG0532|consen 96 AFVSLESLILYHN-CIRT-IPEA-ICNLEALTFLDLSSN-QLSHLPDGL-----------CDLPLKVLIVSNN-KLTSLP 159 (722)
T ss_pred HHHHHHHHHHHhc-ccee-cchh-hhhhhHHHHhhhccc-hhhcCChhh-----------hcCcceeEEEecC-ccccCC
Confidence 3556666655532 2333 3333 367777888888776 555554311 2235777777765 777777
Q ss_pred CCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceecccc--
Q 041021 145 NFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKEN-- 222 (320)
Q Consensus 145 ~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~-- 222 (320)
.+ ++..++|..++++.|. +..++.. +.+..+|+++.+..
T Consensus 160 ~~---ig~~~tl~~ld~s~ne-i~slpsq-----------------------------------l~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 160 EE---IGLLPTLAHLDVSKNE-IQSLPSQ-----------------------------------LGYLTSLRDLNVRRNH 200 (722)
T ss_pred cc---cccchhHHHhhhhhhh-hhhchHH-----------------------------------hhhHHHHHHHHHhhhh
Confidence 63 3467778888877664 3333321 22222222222211
Q ss_pred ---ccCccccCccceEEEccCCCcccccCCccCCCCccEEeecCcccccc
Q 041021 223 ---AESNKVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLIN 269 (320)
Q Consensus 223 ---~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 269 (320)
++.+...-.|..|+++ |+++..+|.++..|..|++|.+.+.| ++.
T Consensus 201 l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP-LqS 248 (722)
T KOG0532|consen 201 LEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP-LQS 248 (722)
T ss_pred hhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCC-CCC
Confidence 1111111235566665 56888888888888899998888744 443
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=91.50 E-value=0.0077 Score=58.30 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=12.4
Q ss_pred hcCCCCCceeccccccC
Q 041021 209 LSGLHKVQHLWKENAES 225 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~ 225 (320)
++.+..|+.+|+.|++.
T Consensus 275 LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 275 LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHHHHHHHHhhcCCcc
Confidence 55666788888888764
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.79 E-value=0.015 Score=50.05 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=17.6
Q ss_pred cCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCccccee
Q 041021 65 FFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEV 109 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 109 (320)
.++.|+.|.++= ..++++.| +..|++|++|++..+ .|.++
T Consensus 39 kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN-~I~sl 78 (388)
T KOG2123|consen 39 KMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKN-CIESL 78 (388)
T ss_pred hcccceeEEeec-cccccchh---HHHHHHHHHHHHHhc-ccccH
Confidence 345555554443 23333332 244555555555444 34433
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.19 E-value=2.1 Score=32.22 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=37.7
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLH 111 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 111 (320)
.+++|+++.+.+ .+..+.. .....+++|+.+.+.+ .+..+. ...+..+++|+.+.+.. .+..+..
T Consensus 33 ~~~~l~~i~~~~--~~~~i~~---~~F~~~~~l~~i~~~~--~~~~i~-~~~F~~~~~l~~i~~~~--~~~~i~~ 97 (129)
T PF13306_consen 33 NCTSLKSINFPN--NLTSIGD---NAFSNCKSLESITFPN--NLKSIG-DNAFSNCTNLKNIDIPS--NITEIGS 97 (129)
T ss_dssp T-TT-SEEEESS--TTSCE-T---TTTTT-TT-EEEEETS--TT-EE--TTTTTT-TTECEEEETT--T-BEEHT
T ss_pred cccccccccccc--cccccce---eeeecccccccccccc--cccccc-cccccccccccccccCc--cccEEch
Confidence 467899999875 3555433 2356777899999965 344433 33457799999999965 4666644
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.65 E-value=0.12 Score=50.57 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=8.1
Q ss_pred CCccCeEeecCC
Q 041021 126 FPKLSELRLIDL 137 (320)
Q Consensus 126 ~~~L~~L~l~~c 137 (320)
|.+|+.|.+.+|
T Consensus 108 F~sLr~LElrg~ 119 (1096)
T KOG1859|consen 108 FRSLRVLELRGC 119 (1096)
T ss_pred ccceeeEEecCc
Confidence 456777777766
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.65 E-value=0.31 Score=42.66 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=18.1
Q ss_pred CCCccEEeeccCcCccccC-chhHHhhcccCCeEEEccC
Q 041021 66 FNNLAQLVVDDCTNMSSAI-PANLLWCLNNLAWLEVRNC 103 (320)
Q Consensus 66 ~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c 103 (320)
+..++.|++.+. .+.++. -..+..++|.|+.|+++.+
T Consensus 70 ~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 70 VTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred hhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCC
Confidence 455555655542 222211 1223456666666666655
No 68
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=87.47 E-value=0.069 Score=50.49 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=43.6
Q ss_pred cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 227 KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
..+.+|+.|.+... .+.++|..+. .=.|..||++ |+++..+|.. ...+..|++|-+.+.|
T Consensus 186 ~~l~slr~l~vrRn-~l~~lp~El~-~LpLi~lDfS-cNkis~iPv~--fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRN-HLEDLPEELC-SLPLIRLDFS-CNKISYLPVD--FRKMRHLQVLQLENNP 245 (722)
T ss_pred hhHHHHHHHHHhhh-hhhhCCHHHh-CCceeeeecc-cCceeecchh--hhhhhhheeeeeccCC
Confidence 45667777777774 5666766554 4457788887 5899999873 3577999999998743
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.25 E-value=0.49 Score=23.87 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=8.9
Q ss_pred ccEEeecCccccccccC
Q 041021 256 LATLEVSKCHGLINLLT 272 (320)
Q Consensus 256 L~~L~l~~c~~l~~l~~ 272 (320)
|++|++++| +++.+|.
T Consensus 2 L~~Ldls~n-~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPS 17 (22)
T ss_dssp ESEEEETSS-EESEEGT
T ss_pred ccEEECCCC-cCEeCCh
Confidence 556666665 4555543
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=83.12 E-value=0.14 Score=39.70 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=27.6
Q ss_pred ccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCC
Q 041021 69 LAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDL 137 (320)
Q Consensus 69 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c 137 (320)
|+..++++. .++. +|..+...++.++.|++.++ .|.++|.+. . .+|.|+.|+++..
T Consensus 55 l~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~n-eisdvPeE~---------A-am~aLr~lNl~~N 110 (177)
T KOG4579|consen 55 LTKISLSDN-GFKK-FPKKFTIKFPTATTLNLANN-EISDVPEEL---------A-AMPALRSLNLRFN 110 (177)
T ss_pred EEEEecccc-hhhh-CCHHHhhccchhhhhhcchh-hhhhchHHH---------h-hhHHhhhcccccC
Confidence 444455442 3444 33444455555666666655 555555421 1 2355666666554
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=79.05 E-value=1 Score=41.97 Aligned_cols=35 Identities=20% Similarity=0.057 Sum_probs=14.7
Q ss_pred cCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccC
Q 041021 65 FFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNC 103 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 103 (320)
++++|++|++++. .+..+.+ +..++.|+.|++.++
T Consensus 116 ~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 116 SLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSGN 150 (414)
T ss_pred hhhcchheecccc-ccccccc---hhhccchhhheeccC
Confidence 3444555544442 3333222 233444455555444
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=67.87 E-value=2.7 Score=39.11 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=5.1
Q ss_pred cCccceEEEcc
Q 041021 229 FANLKSLEIFE 239 (320)
Q Consensus 229 ~~~L~~L~i~~ 239 (320)
+++|+.|++++
T Consensus 117 ~~~L~~L~ls~ 127 (414)
T KOG0531|consen 117 LVNLQVLDLSF 127 (414)
T ss_pred hhcchheeccc
Confidence 44444444444
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.02 E-value=2.6 Score=21.53 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=5.5
Q ss_pred CCccEEeecCcc
Q 041021 254 ENLATLEVSKCH 265 (320)
Q Consensus 254 ~~L~~L~l~~c~ 265 (320)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 455566665554
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=62.16 E-value=4.9 Score=20.87 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=9.4
Q ss_pred ccCCeEEEccCcccceec
Q 041021 93 NNLAWLEVRNCDSLEEVL 110 (320)
Q Consensus 93 ~~L~~L~i~~c~~l~~i~ 110 (320)
++|++|+++++ .++.++
T Consensus 2 ~~L~~L~L~~N-~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNN-QLSSLP 18 (26)
T ss_pred CCCCEEECCCC-cCCcCC
Confidence 45566666655 555543
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=62.16 E-value=4.9 Score=20.87 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=9.4
Q ss_pred ccCCeEEEccCcccceec
Q 041021 93 NNLAWLEVRNCDSLEEVL 110 (320)
Q Consensus 93 ~~L~~L~i~~c~~l~~i~ 110 (320)
++|++|+++++ .++.++
T Consensus 2 ~~L~~L~L~~N-~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNN-QLSSLP 18 (26)
T ss_pred CCCCEEECCCC-cCCcCC
Confidence 45566666655 555543
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=57.57 E-value=2.7 Score=32.73 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=56.8
Q ss_pred CccEEeeccCcCccccC-chhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCC
Q 041021 68 NLAQLVVDDCTNMSSAI-PANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNF 146 (320)
Q Consensus 68 ~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 146 (320)
-+-.+++++|+- +.+. .......-..|+.++++++ .++++|+ .+...||.++.|++.+. .+.++|.
T Consensus 28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N-~fk~fp~---------kft~kf~t~t~lNl~~n-eisdvPe- 94 (177)
T KOG4579|consen 28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDN-GFKKFPK---------KFTIKFPTATTLNLANN-EISDVPE- 94 (177)
T ss_pred Hhhhcccccchh-hHHHHHHHHHhCCceEEEEecccc-hhhhCCH---------HHhhccchhhhhhcchh-hhhhchH-
Confidence 445566777743 3211 1123345567777889888 7887765 23345688999999886 7888887
Q ss_pred CccccCCCCccEEeeecCC
Q 041021 147 TGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 147 ~~~~~~l~~L~~l~l~~c~ 165 (320)
.+..+|.|+++.++..+
T Consensus 95 --E~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 95 --ELAAMPALRSLNLRFNP 111 (177)
T ss_pred --HHhhhHHhhhcccccCc
Confidence 45789999999998765
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=54.32 E-value=8.5 Score=33.61 Aligned_cols=90 Identities=16% Similarity=0.061 Sum_probs=46.5
Q ss_pred cccccEEeecCCccchhh--hcCCCCCCccCCCccEEeeccCc----------CccccCchhHHhhcccCCeEEEccCcc
Q 041021 38 FRDIKYLQLSHFPRLQEI--WHGQALPVSFFNNLAQLVVDDCT----------NMSSAIPANLLWCLNNLAWLEVRNCDS 105 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~L~~L~l~~c~----------~l~~~~~~~~~~~l~~L~~L~i~~c~~ 105 (320)
+..++++++++..--++- |.+. ...+-.+|+...+++.- ++..+.+ ..-.||+|+.++++++.-
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~--~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~--aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCN--VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLK--ALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHH--HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHH--HHhcCCcceeeecccccc
Confidence 577888888886544431 3332 12334566666555421 1111111 124688899999888832
Q ss_pred cceeccccccccccCCCCCcCCccCeEeecCC
Q 041021 106 LEEVLHLEELSADKEHIGPLFPKLSELRLIDL 137 (320)
Q Consensus 106 l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c 137 (320)
-...++.-. ....+. ..|++|.+++|
T Consensus 105 g~~~~e~L~-----d~is~~-t~l~HL~l~Nn 130 (388)
T COG5238 105 GSEFPEELG-----DLISSS-TDLVHLKLNNN 130 (388)
T ss_pred CcccchHHH-----HHHhcC-CCceeEEeecC
Confidence 222222100 011222 57888888877
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.04 E-value=35 Score=18.02 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=10.2
Q ss_pred ccCCeEEEccCccccee
Q 041021 93 NNLAWLEVRNCDSLEEV 109 (320)
Q Consensus 93 ~~L~~L~i~~c~~l~~i 109 (320)
.+|++|+++++ .|+.+
T Consensus 2 ~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 2 TNLEELDLSQN-KIKKI 17 (26)
T ss_pred CccCEEECCCC-cccee
Confidence 46677777766 55554
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=26.32 E-value=36 Score=18.04 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=10.6
Q ss_pred ccCCeEEEccCcccceecc
Q 041021 93 NNLAWLEVRNCDSLEEVLH 111 (320)
Q Consensus 93 ~~L~~L~i~~c~~l~~i~~ 111 (320)
++|++|+++++ .++.+|+
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 35666666666 5555543
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.73 E-value=40 Score=32.42 Aligned_cols=88 Identities=19% Similarity=0.069 Sum_probs=46.9
Q ss_pred ccCCCccEEeeccCcCccccC-chhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAI-PANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKR 142 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 142 (320)
..++.+..+.+.+. .+..+. ...+.+..|+|+.|+++++.+--.-.. +........||+|.+.+.|--+.
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~--------el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES--------ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchh--------hhhhhcCCCHHHeeecCCccccc
Confidence 45677777777764 333322 234567788888888888721111000 11111235778888887765444
Q ss_pred ccCCCccc----cCCCCccEEe
Q 041021 143 FCNFTGNI----IELPKLEYLI 160 (320)
Q Consensus 143 ~~~~~~~~----~~l~~L~~l~ 160 (320)
+......+ ..+|+|..||
T Consensus 286 f~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhhHHHHHHHHHhcchheeec
Confidence 33221111 2467776664
Done!