Query 041021
Match_columns 320
No_of_seqs 134 out of 1421
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 4E-16 1.4E-20 139.2 17.5 203 38-297 80-294 (328)
2 4fcg_A Uncharacterized protein 99.7 1.1E-15 3.6E-20 136.5 18.2 202 37-289 102-310 (328)
3 2id5_A Lingo-1, leucine rich r 99.7 4.9E-15 1.7E-19 138.7 20.1 108 38-164 55-162 (477)
4 3o6n_A APL1; leucine-rich repe 99.7 7.8E-15 2.7E-19 133.8 20.1 246 37-319 67-346 (390)
5 3zyi_A Leucine-rich repeat-con 99.7 5.4E-15 1.8E-19 137.6 18.9 216 40-291 76-301 (452)
6 2z80_A TOLL-like receptor 2, v 99.6 4.1E-15 1.4E-19 133.9 15.8 222 38-291 75-312 (353)
7 3zyj_A Leucine-rich repeat-con 99.6 1.2E-14 4.2E-19 134.7 18.4 217 39-291 64-290 (440)
8 4fmz_A Internalin; leucine ric 99.6 1.3E-14 4.3E-19 130.2 17.4 240 37-320 64-319 (347)
9 3v47_A TOLL-like receptor 5B a 99.6 2E-14 6.7E-19 133.6 17.7 134 1-165 31-165 (455)
10 3zyi_A Leucine-rich repeat-con 99.6 2.2E-14 7.4E-19 133.5 16.8 216 66-320 74-298 (452)
11 3vq2_A TLR4, TOLL-like recepto 99.6 2.6E-14 9E-19 137.6 17.7 217 37-291 326-556 (606)
12 3zyj_A Leucine-rich repeat-con 99.6 3.1E-14 1.1E-18 132.0 17.5 216 66-320 63-287 (440)
13 4fmz_A Internalin; leucine ric 99.6 2.2E-14 7.4E-19 128.7 15.7 225 1-319 111-340 (347)
14 3oja_B Anopheles plasmodium-re 99.6 6.3E-14 2.2E-18 134.9 19.4 246 37-319 73-352 (597)
15 1ogq_A PGIP-2, polygalacturona 99.6 1.7E-14 6E-19 127.7 13.6 60 227-290 218-278 (313)
16 3t6q_A CD180 antigen; protein- 99.6 6.3E-14 2.1E-18 135.0 18.6 222 37-290 276-510 (606)
17 3v47_A TOLL-like receptor 5B a 99.6 1.6E-13 5.4E-18 127.5 19.8 79 209-290 319-405 (455)
18 2id5_A Lingo-1, leucine rich r 99.6 1.7E-13 5.8E-18 128.2 20.0 241 1-291 81-331 (477)
19 1xku_A Decorin; proteoglycan, 99.6 1.5E-13 5E-18 122.5 18.0 212 39-290 52-273 (330)
20 3oja_B Anopheles plasmodium-re 99.6 5.6E-14 1.9E-18 135.3 16.2 116 37-172 49-164 (597)
21 2xwt_C Thyrotropin receptor; s 99.5 6.7E-14 2.3E-18 119.0 14.1 196 39-292 31-238 (239)
22 3rgz_A Protein brassinosteroid 99.5 5.4E-14 1.8E-18 139.3 15.4 81 209-291 462-549 (768)
23 3t6q_A CD180 antigen; protein- 99.5 1.6E-13 5.6E-18 132.1 18.1 133 1-165 279-411 (606)
24 1ozn_A Reticulon 4 receptor; N 99.5 2.2E-13 7.4E-18 118.8 16.8 198 38-291 31-236 (285)
25 2z81_A CD282 antigen, TOLL-lik 99.5 1.4E-13 4.8E-18 130.9 16.7 133 1-165 27-159 (549)
26 3o6n_A APL1; leucine-rich repe 99.5 1.8E-13 6.2E-18 124.7 16.6 224 37-291 91-350 (390)
27 3o53_A Protein LRIM1, AGAP0063 99.5 6.4E-14 2.2E-18 124.3 12.4 210 36-291 31-248 (317)
28 4ecn_A Leucine-rich repeat pro 99.5 3.6E-13 1.2E-17 134.1 18.7 253 1-291 492-787 (876)
29 1ogq_A PGIP-2, polygalacturona 99.5 4.2E-14 1.4E-18 125.3 10.3 221 37-294 74-305 (313)
30 3bz5_A Internalin-J, INLJ; leu 99.5 7E-13 2.4E-17 123.5 18.9 59 38-109 63-121 (457)
31 2z63_A TOLL-like receptor 4, v 99.5 2.5E-13 8.5E-18 129.7 16.2 197 37-291 323-529 (570)
32 2z66_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 118.3 16.4 195 39-290 28-233 (306)
33 4eco_A Uncharacterized protein 99.5 1.9E-13 6.4E-18 132.6 15.2 253 1-291 250-547 (636)
34 3rgz_A Protein brassinosteroid 99.5 3.9E-13 1.3E-17 133.1 17.5 82 209-292 628-716 (768)
35 2ft3_A Biglycan; proteoglycan, 99.5 4.6E-13 1.6E-17 119.4 16.2 236 39-319 54-301 (332)
36 3o53_A Protein LRIM1, AGAP0063 99.5 1.8E-13 6.2E-18 121.3 13.3 205 64-320 31-245 (317)
37 2z66_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 121.9 11.7 199 37-291 50-259 (306)
38 1o6v_A Internalin A; bacterial 99.5 1E-12 3.5E-17 122.6 18.7 76 209-290 239-319 (466)
39 3vq2_A TLR4, TOLL-like recepto 99.5 1.4E-13 4.7E-18 132.6 12.9 63 209-272 493-563 (606)
40 3j0a_A TOLL-like receptor 5; m 99.5 1.1E-12 3.9E-17 131.1 19.2 133 1-164 25-158 (844)
41 3oja_A Leucine-rich immune mol 99.5 2.2E-13 7.5E-18 127.9 13.3 210 36-291 31-248 (487)
42 3bz5_A Internalin-J, INLJ; leu 99.5 4.9E-13 1.7E-17 124.5 14.7 98 37-164 125-222 (457)
43 2z80_A TOLL-like receptor 2, v 99.5 3E-13 1E-17 121.6 12.8 239 39-320 52-309 (353)
44 3g06_A SSPH2 (leucine-rich rep 99.5 1.5E-12 5.1E-17 125.4 18.1 57 228-291 239-295 (622)
45 2xwt_C Thyrotropin receptor; s 99.5 6.3E-13 2.1E-17 112.9 13.9 191 67-320 31-234 (239)
46 1xku_A Decorin; proteoglycan, 99.5 2.4E-12 8.3E-17 114.5 18.3 237 1-291 53-304 (330)
47 2p1m_B Transport inhibitor res 99.5 5.9E-15 2E-19 141.7 1.2 121 36-166 102-223 (594)
48 2ast_B S-phase kinase-associat 99.5 6.3E-14 2.2E-18 125.0 7.4 111 39-168 70-182 (336)
49 2z62_A TOLL-like receptor 4, v 99.5 1.7E-12 5.7E-17 112.7 16.0 195 39-289 28-233 (276)
50 1ziw_A TOLL-like receptor 3; i 99.5 2E-12 6.7E-17 126.2 18.3 81 209-291 532-620 (680)
51 1ozn_A Reticulon 4 receptor; N 99.5 1.6E-12 5.4E-17 113.3 15.8 180 37-270 54-241 (285)
52 2ft3_A Biglycan; proteoglycan, 99.5 2.4E-12 8.3E-17 114.7 17.0 236 1-291 55-305 (332)
53 4eco_A Uncharacterized protein 99.4 4.5E-13 1.5E-17 129.9 12.9 218 37-290 247-498 (636)
54 3j0a_A TOLL-like receptor 5; m 99.4 3.8E-12 1.3E-16 127.3 19.7 79 209-290 286-372 (844)
55 1o6v_A Internalin A; bacterial 99.4 2.9E-12 9.9E-17 119.6 17.4 205 37-291 175-386 (466)
56 3oja_A Leucine-rich immune mol 99.4 1.4E-12 4.6E-17 122.6 14.9 203 64-319 31-244 (487)
57 2ast_B S-phase kinase-associat 99.4 3.3E-14 1.1E-18 126.8 3.5 209 37-298 91-310 (336)
58 1h6u_A Internalin H; cell adhe 99.4 2.3E-12 7.8E-17 113.8 15.1 185 37-291 39-228 (308)
59 4ay9_X Follicle-stimulating ho 99.4 1.8E-12 6.1E-17 116.5 14.2 118 39-173 30-147 (350)
60 1ziw_A TOLL-like receptor 3; i 99.4 6.5E-12 2.2E-16 122.6 18.3 222 1-290 354-594 (680)
61 2z63_A TOLL-like receptor 4, v 99.4 1.9E-12 6.6E-17 123.4 14.2 236 37-320 280-526 (570)
62 2p1m_B Transport inhibitor res 99.4 2.4E-14 8.3E-19 137.4 0.9 112 37-161 128-242 (594)
63 2o6q_A Variable lymphocyte rec 99.4 9.9E-12 3.4E-16 107.5 17.0 106 40-164 38-143 (270)
64 4ecn_A Leucine-rich repeat pro 99.4 2.7E-12 9.3E-17 127.8 14.7 218 37-290 489-738 (876)
65 1p9a_G Platelet glycoprotein I 99.4 1.7E-11 5.7E-16 107.3 17.5 190 37-290 8-205 (290)
66 4ay9_X Follicle-stimulating ho 99.4 8.7E-12 3E-16 112.0 15.4 223 1-288 31-254 (350)
67 1h6u_A Internalin H; cell adhe 99.4 1.5E-11 5.2E-16 108.5 15.1 187 1-271 42-233 (308)
68 4g8a_A TOLL-like receptor 4; l 99.4 1.4E-11 4.6E-16 118.8 16.0 131 1-164 53-183 (635)
69 3ogk_B Coronatine-insensitive 99.3 2.8E-13 9.5E-18 130.0 3.5 209 37-291 291-524 (592)
70 3ogk_B Coronatine-insensitive 99.3 5.4E-13 1.8E-17 128.0 5.2 108 209-319 314-443 (592)
71 2z7x_B TOLL-like receptor 1, v 99.3 3.3E-11 1.1E-15 113.8 16.9 57 38-103 68-125 (520)
72 1wwl_A Monocyte differentiatio 99.3 9.3E-12 3.2E-16 110.0 12.0 198 38-290 94-306 (312)
73 3rfs_A Internalin B, repeat mo 99.3 5.3E-11 1.8E-15 103.0 15.2 170 37-265 39-216 (272)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 4.1E-11 1.4E-15 114.4 15.8 104 39-163 52-155 (562)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 7.7E-11 2.6E-15 112.5 17.4 61 38-108 75-135 (562)
76 2z62_A TOLL-like receptor 4, v 99.3 5.4E-11 1.8E-15 103.1 14.9 199 1-265 29-235 (276)
77 3g06_A SSPH2 (leucine-rich rep 99.3 1.2E-10 4E-15 112.2 18.4 72 66-164 120-191 (622)
78 2z7x_B TOLL-like receptor 1, v 99.3 3.8E-11 1.3E-15 113.4 14.8 63 228-291 322-385 (520)
79 2o6q_A Variable lymphocyte rec 99.3 9.2E-11 3.1E-15 101.4 15.5 193 39-291 16-216 (270)
80 1jl5_A Outer protein YOPM; leu 99.3 1.6E-10 5.5E-15 107.5 18.1 54 227-290 234-287 (454)
81 2z81_A CD282 antigen, TOLL-lik 99.3 3.2E-11 1.1E-15 114.6 12.4 221 38-291 25-262 (549)
82 4glp_A Monocyte differentiatio 99.3 2.7E-11 9.2E-16 106.9 11.1 89 67-165 91-180 (310)
83 1h6t_A Internalin B; cell adhe 99.3 7.8E-11 2.7E-15 103.1 13.9 101 37-164 44-144 (291)
84 3m19_A Variable lymphocyte rec 99.3 1.6E-10 5.6E-15 98.7 15.6 83 67-164 35-117 (251)
85 3rfs_A Internalin B, repeat mo 99.2 2.2E-10 7.7E-15 99.0 15.8 170 64-290 38-215 (272)
86 1wwl_A Monocyte differentiatio 99.2 1.9E-11 6.4E-16 108.0 8.7 197 66-320 94-304 (312)
87 1jl5_A Outer protein YOPM; leu 99.2 8.6E-10 3E-14 102.5 20.1 97 37-164 109-205 (454)
88 4glp_A Monocyte differentiatio 99.2 1.8E-11 6E-16 108.1 7.8 89 64-164 114-207 (310)
89 4ezg_A Putative uncharacterize 99.2 1.8E-10 6.1E-15 94.8 13.2 152 64-291 41-192 (197)
90 1p9a_G Platelet glycoprotein I 99.2 3.2E-10 1.1E-14 99.1 15.4 170 39-266 31-207 (290)
91 1m9s_A Internalin B; cell inva 99.2 1.1E-10 3.8E-15 112.2 12.9 163 37-265 41-208 (605)
92 2ca6_A RAN GTPase-activating p 99.2 5.7E-12 2E-16 114.6 2.7 37 65-103 92-132 (386)
93 1h6t_A Internalin B; cell adhe 99.2 2.9E-10 9.9E-15 99.4 12.9 164 64-291 43-211 (291)
94 1z7x_W Ribonuclease inhibitor; 99.1 3.5E-12 1.2E-16 118.5 -0.7 142 1-164 86-237 (461)
95 1z7x_W Ribonuclease inhibitor; 99.1 3.2E-12 1.1E-16 118.8 -1.6 235 36-290 25-294 (461)
96 1m9s_A Internalin B; cell inva 99.1 5.9E-10 2E-14 107.1 13.0 164 64-291 40-208 (605)
97 3m19_A Variable lymphocyte rec 99.1 1.8E-09 6.2E-14 92.1 14.2 155 39-265 35-190 (251)
98 4ezg_A Putative uncharacterize 99.1 1E-09 3.5E-14 90.2 11.7 112 36-170 41-152 (197)
99 2o6s_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 91.3 10.0 113 38-170 27-139 (208)
100 2ca6_A RAN GTPase-activating p 99.0 6.1E-11 2.1E-15 107.8 2.6 230 36-291 29-314 (386)
101 4g8a_A TOLL-like receptor 4; l 99.0 1.1E-08 3.7E-13 98.4 18.0 60 228-290 492-552 (635)
102 3goz_A Leucine-rich repeat-con 99.0 2.8E-10 9.6E-15 102.6 5.1 36 229-265 224-264 (362)
103 1xeu_A Internalin C; cellular 99.0 1.3E-09 4.3E-14 93.9 8.7 161 37-264 17-182 (263)
104 3goz_A Leucine-rich repeat-con 99.0 2.1E-10 7E-15 103.5 3.4 211 38-291 21-264 (362)
105 3e6j_A Variable lymphocyte rec 98.9 2.1E-08 7.3E-13 84.3 13.4 150 40-265 20-170 (229)
106 3cvr_A Invasion plasmid antige 98.9 2.7E-08 9.3E-13 94.7 15.1 172 40-291 60-241 (571)
107 2o6s_A Variable lymphocyte rec 98.9 8.5E-09 2.9E-13 85.2 10.0 90 65-170 26-115 (208)
108 1xeu_A Internalin C; cellular 98.9 2.3E-08 7.7E-13 86.0 12.6 140 37-241 39-183 (263)
109 3cvr_A Invasion plasmid antige 98.9 2.4E-08 8.3E-13 95.1 13.8 157 38-269 79-245 (571)
110 2xot_A Amphoterin-induced prot 98.8 4.1E-08 1.4E-12 88.3 13.2 85 66-165 38-123 (361)
111 2ell_A Acidic leucine-rich nuc 98.8 1.9E-08 6.4E-13 80.2 9.2 130 1-165 25-158 (168)
112 2v70_A SLIT-2, SLIT homolog 2 98.8 9.6E-08 3.3E-12 79.7 12.7 85 66-164 31-115 (220)
113 2ell_A Acidic leucine-rich nuc 98.8 3.8E-08 1.3E-12 78.4 9.6 131 91-292 22-159 (168)
114 2v70_A SLIT-2, SLIT homolog 2 98.7 1.3E-07 4.4E-12 79.0 12.8 144 69-265 13-164 (220)
115 2je0_A Acidic leucine-rich nuc 98.7 4.4E-08 1.5E-12 76.4 9.0 128 91-289 15-149 (149)
116 2v9t_B SLIT homolog 2 protein 98.7 1.4E-07 5E-12 78.6 12.7 142 70-265 14-163 (220)
117 2v9t_B SLIT homolog 2 protein 98.7 2.4E-07 8.1E-12 77.3 13.3 107 39-164 32-138 (220)
118 3e6j_A Variable lymphocyte rec 98.7 1.7E-07 5.7E-12 78.7 12.3 113 38-171 39-151 (229)
119 1dce_A Protein (RAB geranylger 98.7 1.8E-09 6.1E-14 103.0 -0.7 60 229-291 485-544 (567)
120 1a9n_A U2A', U2A'; complex (nu 98.6 9E-08 3.1E-12 76.9 8.5 40 251-291 110-151 (176)
121 3sb4_A Hypothetical leucine ri 98.6 1.8E-07 6E-12 83.0 9.3 74 211-289 224-306 (329)
122 2je0_A Acidic leucine-rich nuc 98.6 1.4E-07 4.6E-12 73.5 7.5 84 64-165 14-99 (149)
123 1a9n_A U2A', U2A'; complex (nu 98.6 1.3E-07 4.6E-12 75.9 7.3 84 64-165 16-99 (176)
124 2xot_A Amphoterin-induced prot 98.5 1.1E-06 3.7E-11 79.0 12.4 166 70-290 21-199 (361)
125 3e4g_A ATP synthase subunit S, 98.5 1.2E-07 4.2E-12 75.8 4.7 92 67-170 61-155 (176)
126 3e4g_A ATP synthase subunit S, 98.5 8.3E-08 2.9E-12 76.7 3.6 92 39-143 61-155 (176)
127 3sb4_A Hypothetical leucine ri 98.4 1.1E-06 3.6E-11 77.9 10.8 58 228-289 224-283 (329)
128 2o6r_A Variable lymphocyte rec 98.4 2.9E-06 9.9E-11 67.9 11.6 128 69-267 9-137 (177)
129 2o6r_A Variable lymphocyte rec 98.3 2.3E-06 7.9E-11 68.5 9.5 109 38-165 27-135 (177)
130 1w8a_A SLIT protein; signaling 98.3 2.9E-06 9.8E-11 69.1 10.2 109 39-165 29-137 (192)
131 4fdw_A Leucine rich hypothetic 98.3 2.9E-05 9.8E-10 70.7 17.5 206 40-290 136-355 (401)
132 1w8a_A SLIT protein; signaling 98.3 5.6E-06 1.9E-10 67.3 11.3 128 70-267 11-139 (192)
133 4fdw_A Leucine rich hypothetic 98.3 6.1E-05 2.1E-09 68.5 18.5 76 209-289 296-379 (401)
134 2wfh_A SLIT homolog 2 protein 98.2 4.5E-06 1.5E-10 68.0 9.2 107 39-165 31-137 (193)
135 2wfh_A SLIT homolog 2 protein 98.2 9.6E-06 3.3E-10 66.0 11.1 58 96-171 13-70 (193)
136 4b8c_D Glucose-repressible alc 98.1 3.8E-06 1.3E-10 82.5 7.5 113 88-270 219-331 (727)
137 1ds9_A Outer arm dynein; leuci 98.1 3E-07 1E-11 75.3 -0.9 60 89-164 44-103 (198)
138 2ra8_A Uncharacterized protein 98.1 1.2E-05 4.3E-10 72.0 9.1 86 64-163 136-228 (362)
139 3g39_A Variable lymphocyte rec 98.0 2.4E-05 8.2E-10 62.2 9.3 104 40-165 10-113 (170)
140 4b8c_D Glucose-repressible alc 98.0 7.9E-06 2.7E-10 80.2 7.3 91 63-172 220-310 (727)
141 1dce_A Protein (RAB geranylger 97.9 3.6E-05 1.2E-09 73.3 9.8 114 94-261 442-567 (567)
142 2r9u_A Variable lymphocyte rec 97.9 5.8E-05 2E-09 60.3 8.6 102 42-165 15-116 (174)
143 3g39_A Variable lymphocyte rec 97.8 0.00011 3.7E-09 58.3 9.5 103 94-265 10-113 (170)
144 1ds9_A Outer arm dynein; leuci 97.8 1.4E-06 4.7E-11 71.3 -1.8 120 125-286 46-180 (198)
145 3un9_A NLR family member X1; l 97.8 1.8E-06 6.2E-11 77.9 -1.2 60 209-270 179-254 (372)
146 4gt6_A Cell surface protein; l 97.8 0.00077 2.6E-08 60.9 15.9 35 252-289 332-366 (394)
147 4fs7_A Uncharacterized protein 97.8 0.001 3.6E-08 60.0 16.5 57 37-101 69-125 (394)
148 2ra8_A Uncharacterized protein 97.7 4.4E-05 1.5E-09 68.4 5.9 183 66-291 106-318 (362)
149 2r9u_A Variable lymphocyte rec 97.6 0.00013 4.3E-09 58.3 7.1 85 38-138 32-116 (174)
150 2ifg_A High affinity nerve gro 97.6 0.00025 8.7E-09 62.8 9.4 66 38-109 30-95 (347)
151 4gt6_A Cell surface protein; l 97.4 0.011 3.7E-07 53.3 17.5 74 209-287 261-341 (394)
152 4fs7_A Uncharacterized protein 97.4 0.0032 1.1E-07 56.8 13.8 76 209-289 293-375 (394)
153 2ifg_A High affinity nerve gro 97.3 0.00035 1.2E-08 61.9 7.1 103 43-165 12-114 (347)
154 3un9_A NLR family member X1; l 97.3 2.4E-05 8.4E-10 70.4 -0.5 168 38-245 71-253 (372)
155 1io0_A Tropomodulin; LRR prote 96.3 0.0041 1.4E-07 49.8 4.6 82 209-291 61-162 (185)
156 3rw6_A Nuclear RNA export fact 95.4 0.0046 1.6E-07 52.7 1.4 88 227-318 167-257 (267)
157 3rw6_A Nuclear RNA export fact 94.7 0.035 1.2E-06 47.2 5.1 85 65-160 168-257 (267)
158 4h09_A Hypothetical leucine ri 92.7 0.74 2.5E-05 40.7 10.4 36 64-102 214-249 (379)
159 4h09_A Hypothetical leucine ri 92.3 0.53 1.8E-05 41.6 8.8 35 64-101 237-271 (379)
160 1io0_A Tropomodulin; LRR prote 89.8 0.22 7.6E-06 39.5 3.3 78 209-288 32-129 (185)
161 3rfe_A Platelet glycoprotein I 82.5 1.6 5.4E-05 32.3 4.4 34 230-264 31-65 (130)
162 3rfe_A Platelet glycoprotein I 69.6 3.9 0.00013 30.1 3.5 14 90-103 52-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 32.9 22 0.00074 28.3 2.2 81 209-291 37-137 (197)
164 2lz0_A Uncharacterized protein 21.9 71 0.0024 22.0 3.0 10 91-100 41-50 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=4e-16 Score=139.24 Aligned_cols=203 Identities=18% Similarity=0.274 Sum_probs=128.9
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
.++++.|+++++. +..++. ....+++|++|++.++ .+.. +|.. +..+++|++|++++| .++.++..
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~----~l~~l~~L~~L~L~~n-~l~~-lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~----- 145 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPD----QAFRLSHLQHMTIDAA-GLME-LPDT-MQQFAGLETLTLARN-PLRALPAS----- 145 (328)
T ss_dssp STTCCEEEEESSC-CSSCCS----CGGGGTTCSEEEEESS-CCCC-CCSC-GGGGTTCSEEEEESC-CCCCCCGG-----
T ss_pred ccceeEEEccCCC-chhcCh----hhhhCCCCCEEECCCC-Cccc-hhHH-HhccCCCCEEECCCC-ccccCcHH-----
Confidence 4678888887654 444322 2445788888888876 4554 4443 367888888888887 56655431
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCc------cccCCCCccEEeeecCCCCCccccCcccccccccccccccccc
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTG------NIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLK 191 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~------~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~ 191 (320)
...+++|++|++++|..+..++.... .+..+++|++|+++++ .++.+|..
T Consensus 146 -----l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~------------------ 201 (328)
T 4fcg_A 146 -----IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS------------------ 201 (328)
T ss_dssp -----GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG------------------
T ss_pred -----HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh------------------
Confidence 12357888888888877766655320 1234788888888776 34444432
Q ss_pred ChhHHhhcccccchHHHhcCCCCCceeccccccCc------cccCccceEEEccCCCcccccCCccCCCCccEEeecCcc
Q 041021 192 SEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCH 265 (320)
Q Consensus 192 ~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 265 (320)
+..+++|+.+.+.++... ..+++|+.|++++|.....++..+..+++|++|++++|+
T Consensus 202 -----------------l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 202 -----------------IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp -----------------GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred -----------------hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 455666666665543321 456677777777776666666666677777777777777
Q ss_pred ccccccCcchhhhccccCEEeEccccccceee
Q 041021 266 GLINLLTLSTSESLVNLERMKITDCKMMEEII 297 (320)
Q Consensus 266 ~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~ 297 (320)
.++.+|.. ...+++|++|++++|+.+..+.
T Consensus 265 ~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 265 NLLTLPLD--IHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TCCBCCTT--GGGCTTCCEEECTTCTTCCCCC
T ss_pred chhhcchh--hhcCCCCCEEeCCCCCchhhcc
Confidence 66666542 3566777777777776665443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=1.1e-15 Score=136.54 Aligned_cols=202 Identities=22% Similarity=0.256 Sum_probs=152.2
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +..++ .....+++|++|+++++ .+.. +|.. +..+++|++|++++|..+..++......
T Consensus 102 ~l~~L~~L~L~~n~-l~~lp----~~~~~l~~L~~L~Ls~n-~l~~-lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 102 RLSHLQHMTIDAAG-LMELP----DTMQQFAGLETLTLARN-PLRA-LPAS-IASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp GGTTCSEEEEESSC-CCCCC----SCGGGGTTCSEEEEESC-CCCC-CCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hCCCCCEEECCCCC-ccchh----HHHhccCCCCEEECCCC-cccc-CcHH-HhcCcCCCEEECCCCCCccccChhHhhc
Confidence 37999999999765 44432 23567899999999997 5665 4544 5889999999999997777765422100
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
. .......+++|++|+++++ ++..++. .+..+++|++|+++++. +..++..
T Consensus 174 ~-~~~~~~~l~~L~~L~L~~n-~l~~lp~---~l~~l~~L~~L~L~~N~-l~~l~~~----------------------- 224 (328)
T 4fcg_A 174 D-ASGEHQGLVNLQSLRLEWT-GIRSLPA---SIANLQNLKSLKIRNSP-LSALGPA----------------------- 224 (328)
T ss_dssp C--CCCEEESTTCCEEEEEEE-CCCCCCG---GGGGCTTCCEEEEESSC-CCCCCGG-----------------------
T ss_pred c-chhhhccCCCCCEEECcCC-CcCcchH---hhcCCCCCCEEEccCCC-CCcCchh-----------------------
Confidence 0 0011123689999999998 6666654 46779999999999974 4444432
Q ss_pred hhcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCCCccEEeecCcccccc
Q 041021 197 LVANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLIN 269 (320)
Q Consensus 197 ~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 269 (320)
+..+++|+.+.+.++... ..+++|+.|++.+|..++.++..+..+++|++|++++|+.++.
T Consensus 225 ------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 225 ------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp ------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred ------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 666778888877764321 6788999999999999999998889999999999999999999
Q ss_pred ccCcchhhhccccCEEeEcc
Q 041021 270 LLTLSTSESLVNLERMKITD 289 (320)
Q Consensus 270 l~~~~~~~~l~~L~~L~l~~ 289 (320)
+|. ....+++|+.+++..
T Consensus 293 iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 293 LPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp CCG--GGGGSCTTCEEECCG
T ss_pred ccH--HHhhccCceEEeCCH
Confidence 976 356889999998864
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=4.9e-15 Score=138.70 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=53.4
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
+++|++|+++++. +..+.. ..+..+++|++|++.++ .+..++ ...+..+++|++|+++++ .++.+++
T Consensus 55 l~~L~~L~L~~n~-i~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~------ 121 (477)
T 2id5_A 55 FPHLEELELNENI-VSAVEP---GAFNNLFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISEN-KIVILLD------ 121 (477)
T ss_dssp CTTCCEEECTTSC-CCEECT---TTTTTCTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTS-CCCEECT------
T ss_pred CCCCCEEECCCCc-cCEeCh---hhhhCCccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCC-ccccCCh------
Confidence 5666666665542 332211 12345566666666654 344422 222355666666666666 4444432
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecC
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c 164 (320)
.....+++|++|+++++ .+..+.... +..+++|++|+++++
T Consensus 122 ---~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 122 ---YMFQDLYNLKSLEVGDN-DLVYISHRA--FSGLNSLEQLTLEKC 162 (477)
T ss_dssp ---TTTTTCTTCCEEEECCT-TCCEECTTS--STTCTTCCEEEEESC
T ss_pred ---hHccccccCCEEECCCC-ccceeChhh--ccCCCCCCEEECCCC
Confidence 11122356666666655 333333322 345666666666665
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=7.8e-15 Score=133.81 Aligned_cols=246 Identities=16% Similarity=0.126 Sum_probs=135.4
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +..+... ....+++|++|++.++ .+...++. .+..+++|++|++++| .++.++..
T Consensus 67 ~l~~L~~L~L~~n~-i~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~~---- 135 (390)
T 3o6n_A 67 SFRQVELLNLNDLQ-IEEIDTY---AFAYAHTIQKLYMGFN-AIRYLPPH-VFQNVPLLTVLVLERN-DLSSLPRG---- 135 (390)
T ss_dssp HCCCCSEEECTTSC-CCEECTT---TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTT----
T ss_pred ccccCcEEECCCCc-ccccChh---hccCCCCcCEEECCCC-CCCcCCHH-HhcCCCCCCEEECCCC-ccCcCCHH----
Confidence 46788888887654 4443221 2456778888888876 45554443 3467788888888877 66665431
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCcccccc--------------ccc
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLY--------------MTT 182 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~--------------~~~ 182 (320)
....+++|++|+++++ .+..+++.. +..+++|++|+++++. ++.++...+..-. ...
T Consensus 136 -----~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 206 (390)
T 3o6n_A 136 -----IFHNTPKLTTLSMSNN-NLERIEDDT--FQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206 (390)
T ss_dssp -----TTTTCTTCCEEECCSS-CCCBCCTTT--TSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEECCSS
T ss_pred -----HhcCCCCCcEEECCCC-ccCccChhh--ccCCCCCCEEECCCCc-CCccccccccccceeecccccccccCCCCc
Confidence 1123467777777766 444443322 4456677777776643 3332211110000 000
Q ss_pred cc-----------cccccccChhHHh--hcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCC
Q 041021 183 DN-----------KEAQKLKSEENLL--VANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSK 242 (320)
Q Consensus 183 ~~-----------~~~~~l~~l~~L~--~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~ 242 (320)
.. .......+++.|. .+....++ . +..+++|+.+.+.++... ..+++|+.|+++++ .
T Consensus 207 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 283 (390)
T 3o6n_A 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-R 283 (390)
T ss_dssp CSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-G-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-C
T ss_pred ceEEECCCCeeeeccccccccccEEECCCCCCcccH-H-HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-c
Confidence 00 0000001111110 01111111 1 666777777777665432 45778888888876 5
Q ss_pred cccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccccccceeecccccccccceeEecccceeec
Q 041021 243 LQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLECLGL 319 (320)
Q Consensus 243 l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 319 (320)
++.++.....+++|++|++++| +++.++.. ...+++|++|++++|+ +..+ ....+++|+.|++
T Consensus 284 l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~----------~~~~~~~L~~L~l 346 (390)
T 3o6n_A 284 LVALNLYGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTL----------KLSTHHTLKNLTL 346 (390)
T ss_dssp CCEEECSSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCC----------CCCTTCCCSEEEC
T ss_pred CcccCcccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-ccee----------CchhhccCCEEEc
Confidence 6666666667788888888886 56666542 3467888888888874 3222 1224677777765
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=5.4e-15 Score=137.63 Aligned_cols=216 Identities=17% Similarity=0.157 Sum_probs=107.9
Q ss_pred cccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccccc
Q 041021 40 DIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADK 119 (320)
Q Consensus 40 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 119 (320)
+|+.|+++++. +..+... ....+++|++|+++++ .+....+.. +..+++|++|+++++ .++.++.
T Consensus 76 ~l~~L~L~~n~-i~~~~~~---~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-------- 140 (452)
T 3zyi_A 76 NTRYLNLMENN-IQMIQAD---TFRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-WLTVIPS-------- 140 (452)
T ss_dssp TCSEEECCSSC-CCEECTT---TTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSBCCT--------
T ss_pred CccEEECcCCc-CceECHH---HcCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-cCCccCh--------
Confidence 45555555432 3322111 1344555555555554 344433222 245555555555555 4444432
Q ss_pred CCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh--
Q 041021 120 EHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL-- 197 (320)
Q Consensus 120 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-- 197 (320)
.....+++|++|+++++ .+..++... +..+++|++|++++|..+..++...+ ..+.+++.|.
T Consensus 141 -~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~------------~~l~~L~~L~L~ 204 (452)
T 3zyi_A 141 -GAFEYLSKLRELWLRNN-PIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAF------------EGLFNLKYLNLG 204 (452)
T ss_dssp -TTSSSCTTCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTT------------TTCTTCCEEECT
T ss_pred -hhhcccCCCCEEECCCC-CcceeCHhH--HhcCCcccEEeCCCCCCccccChhhc------------cCCCCCCEEECC
Confidence 11112355555555554 343333322 33455555555555554444433211 1111111110
Q ss_pred hcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccc-cCCccCCCCccEEeecCcccccc
Q 041021 198 VANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHGLIN 269 (320)
Q Consensus 198 ~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~ 269 (320)
.+....+|. +..+++|+.+.+.++... ..+++|+.|++.++ .++.+ +..+..+++|+.|+++++ +++.
T Consensus 205 ~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 280 (452)
T 3zyi_A 205 MCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSS 280 (452)
T ss_dssp TSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred CCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCc
Confidence 011111111 455667777776654332 56678888888876 44444 334567788888888885 5777
Q ss_pred ccCcchhhhccccCEEeEcccc
Q 041021 270 LLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 270 l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
++.. ....+++|++|++++++
T Consensus 281 ~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 281 LPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCTT-SSTTCTTCCEEECCSSC
T ss_pred cChH-HhccccCCCEEEccCCC
Confidence 7653 34567888888887653
No 6
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=4.1e-15 Score=133.90 Aligned_cols=222 Identities=15% Similarity=0.191 Sum_probs=104.1
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
+++|+.|+++++. +..+... ....+++|++|+++++ .+.. .+...+..+++|++|+++++ .++.++..
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~l~~~----- 142 (353)
T 2z80_A 75 CVNLQALVLTSNG-INTIEED---SFSSLGSLEHLDLSYN-YLSN-LSSSWFKPLSSLTFLNLLGN-PYKTLGET----- 142 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSS-CCSS-CCHHHHTTCTTCSEEECTTC-CCSSSCSS-----
T ss_pred CCCCCEEECCCCc-cCccCHh---hcCCCCCCCEEECCCC-cCCc-CCHhHhCCCccCCEEECCCC-CCcccCch-----
Confidence 5666666666542 3332111 2344566666666664 3444 23333456666666666666 44444220
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL 197 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 197 (320)
.....+++|++|+++++..+..++... +..+++|++++++++. ++.+....+ ..+.+++.|.
T Consensus 143 ---~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~l------------~~l~~L~~L~ 204 (353)
T 2z80_A 143 ---SLFSHLTKLQILRVGNMDTFTKIQRKD--FAGLTFLEELEIDASD-LQSYEPKSL------------KSIQNVSHLI 204 (353)
T ss_dssp ---CSCTTCTTCCEEEEEESSSCCEECTTT--TTTCCEEEEEEEEETT-CCEECTTTT------------TTCSEEEEEE
T ss_pred ---hhhccCCCCcEEECCCCccccccCHHH--ccCCCCCCEEECCCCC-cCccCHHHH------------hccccCCeec
Confidence 111234666666666665555554322 3456666666666653 222211100 0111111110
Q ss_pred --hcccccchHHHhcCCCCCceeccccccCc----------cccCccceEEEccCCC----cccccCCccCCCCccEEee
Q 041021 198 --VANQIHLFDEKLSGLHKVQHLWKENAESN----------KVFANLKSLEIFECSK----LQKLVPTSWHLENLATLEV 261 (320)
Q Consensus 198 --~~~~~~~~~~li~~~~~L~~l~~~~~~~~----------~~~~~L~~L~i~~c~~----l~~l~~~~~~~~~L~~L~l 261 (320)
.+....+|...+..+++|+.+.+.++... ...+.++.+++.++.- +..++..+..+++|++|++
T Consensus 205 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp EECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 01111112111223444444444332211 1122333333333311 0112333456788888888
Q ss_pred cCccccccccCcchhhhccccCEEeEcccc
Q 041021 262 SKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 262 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
+++ +++.++.. +...+++|++|++++++
T Consensus 285 s~N-~l~~i~~~-~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 285 SRN-QLKSVPDG-IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred CCC-CCCccCHH-HHhcCCCCCEEEeeCCC
Confidence 885 57777653 33577888888888764
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=1.2e-14 Score=134.74 Aligned_cols=217 Identities=18% Similarity=0.188 Sum_probs=110.3
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++++.|+++++. +..+... ....+++|++|+++++ .+..+.+.. +..+++|++|++++| .++.++.
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~---~~~~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~~------- 129 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVN---SFKHLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDN-RLTTIPN------- 129 (440)
T ss_dssp TTCSEEECCSCC-CCEECTT---TTSSCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSS-CCSSCCT-------
T ss_pred CCCcEEEccCCc-CCeeCHH---HhhCCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCC-cCCeeCH-------
Confidence 345566665433 3332211 2344556666666554 344433322 355566666666655 4544432
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh-
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL- 197 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~- 197 (320)
. ....+++|++|+++++ .+..++... +..+++|++|+++++..+..++...+ ..+.+++.|.
T Consensus 130 -~-~~~~l~~L~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~------------~~l~~L~~L~L 192 (440)
T 3zyj_A 130 -G-AFVYLSKLKELWLRNN-PIESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAF------------EGLSNLRYLNL 192 (440)
T ss_dssp -T-TSCSCSSCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTT------------TTCSSCCEEEC
T ss_pred -h-HhhccccCceeeCCCC-cccccCHHH--hhhCcccCEeCCCCCCCcceeCcchh------------hcccccCeecC
Confidence 0 1112355555555554 344443322 34455555555555554444433211 1111111110
Q ss_pred -hcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccC-CccCCCCccEEeecCccccc
Q 041021 198 -VANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVP-TSWHLENLATLEVSKCHGLI 268 (320)
Q Consensus 198 -~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~ 268 (320)
.+....+|. +..+++|+.+.+.++... ..+++|+.|++.++ .++.+++ .+..+++|++|+++++ +++
T Consensus 193 ~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 268 (440)
T 3zyj_A 193 AMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLT 268 (440)
T ss_dssp TTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCC
T ss_pred CCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCC
Confidence 111111111 455666777766654322 56678888888876 4455433 4567788888888885 577
Q ss_pred cccCcchhhhccccCEEeEcccc
Q 041021 269 NLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 269 ~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
.++.. ....+++|+.|++++++
T Consensus 269 ~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 269 LLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCTT-TTSSCTTCCEEECCSSC
T ss_pred ccChh-HhccccCCCEEEcCCCC
Confidence 77653 34567888888887643
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=1.3e-14 Score=130.16 Aligned_cols=240 Identities=16% Similarity=0.189 Sum_probs=128.3
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +..+.. ...+++|++|++.+| .+... + .+..+++|++|++++| .++.++.
T Consensus 64 ~~~~L~~L~l~~n~-i~~~~~-----~~~l~~L~~L~L~~n-~i~~~-~--~~~~l~~L~~L~l~~n-~i~~~~~----- 127 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQ-ITDISP-----LSNLVKLTNLYIGTN-KITDI-S--ALQNLTNLRELYLNED-NISDISP----- 127 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCC-G--GGTTCTTCSEEECTTS-CCCCCGG-----
T ss_pred hcCCccEEEccCCc-cccchh-----hhcCCcCCEEEccCC-cccCc-h--HHcCCCcCCEEECcCC-cccCchh-----
Confidence 36788888888763 443221 456778888888876 45553 2 2467888888888877 5655533
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCcccc-Cccccccccc----cc----ccc
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTS-NSTFVLYMTT----DN----KEA 187 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~-~~~~~~~~~~----~~----~~~ 187 (320)
...+++|++|++++|..+..++. +..+++|+++++++|. +..++. ... ...... .. ...
T Consensus 128 ------~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~-~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 195 (347)
T 4fmz_A 128 ------LANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESK-VKDVTPIANL-TDLYSLSLNYNQIEDISPL 195 (347)
T ss_dssp ------GTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSC-CCCCGGGGGC-TTCSEEECTTSCCCCCGGG
T ss_pred ------hccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCC-cCCchhhccC-CCCCEEEccCCcccccccc
Confidence 12346777777777665554432 3446666666666653 222211 000 000000 00 000
Q ss_pred ccccChhHHh--hcccccchHHHhcCCCCCceeccccccCc-----cccCccceEEEccCCCcccccCCccCCCCccEEe
Q 041021 188 QKLKSEENLL--VANQIHLFDEKLSGLHKVQHLWKENAESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLE 260 (320)
Q Consensus 188 ~~l~~l~~L~--~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~ 260 (320)
..+.+++.+. .+....++. +..+++|+.+.+.++... ..+++|+.|+++++ .++.+ +....+++|++|+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDI-NAVKDLTKLKMLN 271 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC-GGGTTCTTCCEEE
T ss_pred cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccCCC-hhHhcCCCcCEEE
Confidence 1111111110 011111111 555667777766654332 46677777777776 45554 3345677888888
Q ss_pred ecCccccccccCcchhhhccccCEEeEccccccceeecccccccccceeEecccceeecC
Q 041021 261 VSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLECLGLD 320 (320)
Q Consensus 261 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 320 (320)
+++| .+++++ ....+++|++|++++|+ +.... ......+|+|+.|+|+
T Consensus 272 l~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~-------~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 272 VGSN-QISDIS---VLNNLSQLNSLFLNNNQ-LGNED-------MEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CCSS-CCCCCG---GGGGCTTCSEEECCSSC-CCGGG-------HHHHHTCTTCSEEECC
T ss_pred ccCC-ccCCCh---hhcCCCCCCEEECcCCc-CCCcC-------hhHhhccccCCEEEcc
Confidence 8876 466653 23567788888888774 21111 1112237888888763
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=2e-14 Score=133.64 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=83.3
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
+|++|+++++ .++.+.. .. ...+++|++|+++++.-...+.. .....+++|++|+++++ .+
T Consensus 31 ~l~~L~Ls~n-~i~~~~~---~~-----------~~~l~~L~~L~L~~n~~~~~i~~---~~~~~l~~L~~L~Ls~n-~l 91 (455)
T 3v47_A 31 HVNYVDLSLN-SIAELNE---TS-----------FSRLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILKLDYN-QF 91 (455)
T ss_dssp TCCEEECCSS-CCCEECT---TT-----------TSSCTTCCEEECCCCSTTCEECT---TTTTTCTTCCEEECTTC-TT
T ss_pred ccCEEEecCC-ccCcCCh---hH-----------hccCccccEEECcCCcccceECc---ccccccccCCEEeCCCC-cc
Confidence 3677788775 4444411 11 23478888998887753323222 12456788999998887 45
Q ss_pred cccCchhHHhhcccCCeEEEccCcccce-eccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEE
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEE-VLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYL 159 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~-i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l 159 (320)
....+.. +..+++|++|++++| .++. ++. ......+++|++|+++++ .+..+.+.. .+..+++|+++
T Consensus 92 ~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~--------~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~~l~~L~~L 159 (455)
T 3v47_A 92 LQLETGA-FNGLANLEVLTLTQC-NLDGAVLS--------GNFFKPLTSLEMLVLRDN-NIKKIQPAS-FFLNMRRFHVL 159 (455)
T ss_dssp CEECTTT-TTTCTTCCEEECTTS-CCBTHHHH--------SSTTTTCTTCCEEECCSS-BCCSCCCCG-GGGGCTTCCEE
T ss_pred CccChhh-ccCcccCCEEeCCCC-CCCccccC--------cccccCcccCCEEECCCC-ccCccCccc-ccCCCCcccEE
Confidence 5544444 477888999999888 5543 222 111223578888888887 454443322 24568888888
Q ss_pred eeecCC
Q 041021 160 IIENCP 165 (320)
Q Consensus 160 ~l~~c~ 165 (320)
+++++.
T Consensus 160 ~L~~n~ 165 (455)
T 3v47_A 160 DLTFNK 165 (455)
T ss_dssp ECTTCC
T ss_pred eCCCCc
Confidence 887764
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=2.2e-14 Score=133.54 Aligned_cols=216 Identities=18% Similarity=0.142 Sum_probs=141.7
Q ss_pred CCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccC
Q 041021 66 FNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCN 145 (320)
Q Consensus 66 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 145 (320)
.++++.|++.++ .+....+.. +..+++|++|+++++ .++.++. .. ...+++|++|+++++ ++..++.
T Consensus 74 ~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~~~~--------~~-~~~l~~L~~L~L~~n-~l~~~~~ 140 (452)
T 3zyi_A 74 PSNTRYLNLMEN-NIQMIQADT-FRHLHHLEVLQLGRN-SIRQIEV--------GA-FNGLASLNTLELFDN-WLTVIPS 140 (452)
T ss_dssp CTTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECT--------TT-TTTCTTCCEEECCSS-CCSBCCT
T ss_pred CCCccEEECcCC-cCceECHHH-cCCCCCCCEEECCCC-ccCCcCh--------hh-ccCcccCCEEECCCC-cCCccCh
Confidence 478999999996 677755554 488999999999999 7888754 12 224589999999998 5777765
Q ss_pred CCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhh---cccccchHHHhcCCCCCceecccc
Q 041021 146 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLV---ANQIHLFDEKLSGLHKVQHLWKEN 222 (320)
Q Consensus 146 ~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~---~~~~~~~~~li~~~~~L~~l~~~~ 222 (320)
.. +..+++|++|+++++. ++.++...+ ..+.+++.|.- +....++...+.++++|+.+.+.+
T Consensus 141 ~~--~~~l~~L~~L~L~~N~-l~~~~~~~~------------~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 141 GA--FEYLSKLRELWLRNNP-IESIPSYAF------------NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp TT--SSSCTTCCEEECCSCC-CCEECTTTT------------TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred hh--hcccCCCCEEECCCCC-cceeCHhHH------------hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 43 5679999999999874 555544322 12222222210 111122222266777888887766
Q ss_pred ccCc-----cccCccceEEEccCCCcccc-cCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccccccee
Q 041021 223 AESN-----KVFANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEI 296 (320)
Q Consensus 223 ~~~~-----~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~ 296 (320)
+... ..+++|+.|+++++. ++.+ +..+..+++|+.|+++++ +++.++... ...+++|++|+++++ ++..+
T Consensus 206 n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~ 281 (452)
T 3zyi_A 206 CNIKDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHN-NLSSL 281 (452)
T ss_dssp SCCSSCCCCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCC
T ss_pred CcccccccccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCC-cCCcc
Confidence 5432 567788888888874 4444 445677888999999885 466665533 456788999999887 44433
Q ss_pred ecccccccccceeEecccceeecC
Q 041021 297 IQSQVGEEAEDCIVFRKLECLGLD 320 (320)
Q Consensus 297 ~~~~~~~~~~~~~~~~~L~~L~l~ 320 (320)
... ....+++|+.|+|+
T Consensus 282 ~~~-------~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 282 PHD-------LFTPLRYLVELHLH 298 (452)
T ss_dssp CTT-------SSTTCTTCCEEECC
T ss_pred ChH-------HhccccCCCEEEcc
Confidence 221 11236777777763
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.59 E-value=2.6e-14 Score=137.61 Aligned_cols=217 Identities=17% Similarity=0.064 Sum_probs=109.6
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccC--chhHHhhcccCCeEEEccCcccceeccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAI--PANLLWCLNNLAWLEVRNCDSLEEVLHLEE 114 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 114 (320)
.+++|++|+++++.....+ ....+++|++|+++++ .+.... +. .+..+++|++|++++| .++.++.
T Consensus 326 ~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n-~l~~~~~~~~-~~~~~~~L~~L~L~~n-~l~~~~~--- 393 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRN-ALSFSGCCSY-SDLGTNSLRHLDLSFN-GAIIMSA--- 393 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCSS-CEEEEEECCH-HHHCCSCCCEEECCSC-SEEEECC---
T ss_pred CCCccceeeccCCcCccch------hhccCCCCCEEECcCC-ccCCCcchhh-hhccCCcccEeECCCC-ccccchh---
Confidence 3556666666665444332 2345677777777765 333321 22 2466777777777777 4555532
Q ss_pred cccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChh
Q 041021 115 LSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEE 194 (320)
Q Consensus 115 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 194 (320)
....+++|++|+++++ ++....+.. .+..+++|+++++++|.- .......+ ..+.+++
T Consensus 394 -------~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~~~~------------~~l~~L~ 451 (606)
T 3vq2_A 394 -------NFMGLEELQHLDFQHS-TLKRVTEFS-AFLSLEKLLYLDISYTNT-KIDFDGIF------------LGLTSLN 451 (606)
T ss_dssp -------CCTTCTTCCEEECTTS-EEESTTTTT-TTTTCTTCCEEECTTSCC-EECCTTTT------------TTCTTCC
T ss_pred -------hccCCCCCCeeECCCC-ccCCccChh-hhhccccCCEEECcCCCC-Cccchhhh------------cCCCCCC
Confidence 1123467777777776 333333312 245577777777777642 22111101 1111222
Q ss_pred HHh--hcccc--cchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCCCccEEeecC
Q 041021 195 NLL--VANQI--HLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSK 263 (320)
Q Consensus 195 ~L~--~~~~~--~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~ 263 (320)
.|. .+... .+|.. +..+++|+.+.+.++... ..+++|+.|+++++.-....+..+..+++|++|++++
T Consensus 452 ~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp EEECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred EEECCCCcCCCcchHHh-hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 110 01000 01212 555666666666554321 4556666777666633222344455666677777766
Q ss_pred ccccccccCcchhhhcc-ccCEEeEcccc
Q 041021 264 CHGLINLLTLSTSESLV-NLERMKITDCK 291 (320)
Q Consensus 264 c~~l~~l~~~~~~~~l~-~L~~L~l~~C~ 291 (320)
|+ ++.+|.. ...++ +|++|++++++
T Consensus 531 N~-l~~~p~~--~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 531 NR-IETSKGI--LQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SC-CCCEESC--GGGSCTTCCEEECCSCC
T ss_pred Cc-CcccCHh--HhhhcccCcEEEccCCC
Confidence 53 5565553 23444 46677666643
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=3.1e-14 Score=131.99 Aligned_cols=216 Identities=16% Similarity=0.153 Sum_probs=142.5
Q ss_pred CCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccC
Q 041021 66 FNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCN 145 (320)
Q Consensus 66 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 145 (320)
.++++.|++.++ .+....+.. +..+++|++|++++| .++.++.. . ...+++|++|+++++ ++..++.
T Consensus 63 ~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~i~~~--------~-~~~l~~L~~L~L~~n-~l~~~~~ 129 (440)
T 3zyj_A 63 STNTRLLNLHEN-QIQIIKVNS-FKHLRHLEILQLSRN-HIRTIEIG--------A-FNGLANLNTLELFDN-RLTTIPN 129 (440)
T ss_dssp CTTCSEEECCSC-CCCEECTTT-TSSCSSCCEEECCSS-CCCEECGG--------G-GTTCSSCCEEECCSS-CCSSCCT
T ss_pred CCCCcEEEccCC-cCCeeCHHH-hhCCCCCCEEECCCC-cCCccChh--------h-ccCCccCCEEECCCC-cCCeeCH
Confidence 478999999996 577755544 588999999999999 78877541 1 224589999999998 7777765
Q ss_pred CCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhh---cccccchHHHhcCCCCCceecccc
Q 041021 146 FTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLV---ANQIHLFDEKLSGLHKVQHLWKEN 222 (320)
Q Consensus 146 ~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~---~~~~~~~~~li~~~~~L~~l~~~~ 222 (320)
.. +..+++|++|+++++. ++.++...+ ..+.+++.|.- .....++...+.++++|+.+.+.+
T Consensus 130 ~~--~~~l~~L~~L~L~~N~-i~~~~~~~~------------~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 130 GA--FVYLSKLKELWLRNNP-IESIPSYAF------------NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp TT--SCSCSSCCEEECCSCC-CCEECTTTT------------TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred hH--hhccccCceeeCCCCc-ccccCHHHh------------hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 43 5678999999999874 555543222 12222222211 111122222267788888888776
Q ss_pred ccCc-----cccCccceEEEccCCCcccc-cCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccccccee
Q 041021 223 AESN-----KVFANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEI 296 (320)
Q Consensus 223 ~~~~-----~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~ 296 (320)
+... ..+++|+.|+++++ .++.+ +..+..+++|++|+++++ +++.++... ...+++|++|+++++ ++..+
T Consensus 195 n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~ 270 (440)
T 3zyj_A 195 CNLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHN-NLTLL 270 (440)
T ss_dssp SCCSSCCCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTS-STTCTTCCEEECTTS-CCCCC
T ss_pred CcCccccccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCC-CCCcc
Confidence 5432 56778888888887 55555 445577888899998885 577765533 457788999999887 34333
Q ss_pred ecccccccccceeEecccceeecC
Q 041021 297 IQSQVGEEAEDCIVFRKLECLGLD 320 (320)
Q Consensus 297 ~~~~~~~~~~~~~~~~~L~~L~l~ 320 (320)
... ....+++|+.|+|+
T Consensus 271 ~~~-------~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 271 PHD-------LFTPLHHLERIHLH 287 (440)
T ss_dssp CTT-------TTSSCTTCCEEECC
T ss_pred Chh-------HhccccCCCEEEcC
Confidence 211 11236777777763
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.59 E-value=2.2e-14 Score=128.65 Aligned_cols=225 Identities=17% Similarity=0.215 Sum_probs=145.3
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
+|++|+++++. ++.+. ....+++|+.|+++++..+..+. ....+++|++|.+.+|. +
T Consensus 111 ~L~~L~l~~n~-i~~~~----------------~~~~l~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~l~~~~-~ 167 (347)
T 4fmz_A 111 NLRELYLNEDN-ISDIS----------------PLANLTKMYSLNLGANHNLSDLS-----PLSNMTGLNYLTVTESK-V 167 (347)
T ss_dssp TCSEEECTTSC-CCCCG----------------GGTTCTTCCEEECTTCTTCCCCG-----GGTTCTTCCEEECCSSC-C
T ss_pred cCCEEECcCCc-ccCch----------------hhccCCceeEEECCCCCCccccc-----chhhCCCCcEEEecCCC-c
Confidence 46777777763 33331 12347999999999987666531 24578999999999974 5
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEe
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLI 160 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~ 160 (320)
....+ +..+++|++|++++| .++.++. ...+++|+.|+++++ .+..+.. +..+++|++++
T Consensus 168 ~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-----------~~~l~~L~~L~l~~n-~l~~~~~----~~~~~~L~~L~ 227 (347)
T 4fmz_A 168 KDVTP---IANLTDLYSLSLNYN-QIEDISP-----------LASLTSLHYFTAYVN-QITDITP----VANMTRLNSLK 227 (347)
T ss_dssp CCCGG---GGGCTTCSEEECTTS-CCCCCGG-----------GGGCTTCCEEECCSS-CCCCCGG----GGGCTTCCEEE
T ss_pred CCchh---hccCCCCCEEEccCC-ccccccc-----------ccCCCccceeecccC-CCCCCch----hhcCCcCCEEE
Confidence 55333 578999999999999 6666543 224588999999887 4444432 45688999999
Q ss_pred eecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCc-----cccCccceE
Q 041021 161 IENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN-----KVFANLKSL 235 (320)
Q Consensus 161 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L 235 (320)
+++|. ++.++. +..+++|+.+.+.++... ..+++|+.|
T Consensus 228 l~~n~-l~~~~~------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 270 (347)
T 4fmz_A 228 IGNNK-ITDLSP------------------------------------LANLSQLTWLEIGTNQISDINAVKDLTKLKML 270 (347)
T ss_dssp CCSSC-CCCCGG------------------------------------GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred ccCCc-cCCCcc------------------------------------hhcCCCCCEEECCCCccCCChhHhcCCCcCEE
Confidence 98874 333321 334555666655543321 566777788
Q ss_pred EEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccccccceeecccccccccceeEecccc
Q 041021 236 EIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLE 315 (320)
Q Consensus 236 ~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~~~L~ 315 (320)
++++| .++.+ +....+++|++|++++|+ ++..+.. ....+++|++|++++|+ +..+.. ...+++|+
T Consensus 271 ~l~~n-~l~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~ 336 (347)
T 4fmz_A 271 NVGSN-QISDI-SVLNNLSQLNSLFLNNNQ-LGNEDME-VIGGLTNLTTLFLSQNH-ITDIRP---------LASLSKMD 336 (347)
T ss_dssp ECCSS-CCCCC-GGGGGCTTCSEEECCSSC-CCGGGHH-HHHTCTTCSEEECCSSS-CCCCGG---------GGGCTTCS
T ss_pred EccCC-ccCCC-hhhcCCCCCCEEECcCCc-CCCcChh-HhhccccCCEEEccCCc-cccccC---------hhhhhccc
Confidence 88776 55555 334567788888888764 4444332 33467788888888775 333321 12367777
Q ss_pred eeec
Q 041021 316 CLGL 319 (320)
Q Consensus 316 ~L~l 319 (320)
.|++
T Consensus 337 ~L~l 340 (347)
T 4fmz_A 337 SADF 340 (347)
T ss_dssp EESS
T ss_pred eeeh
Confidence 7665
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=6.3e-14 Score=134.94 Aligned_cols=246 Identities=16% Similarity=0.130 Sum_probs=128.8
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|+.|+++++. +..+... .+..+++|++|++.++ .+...++. .+..+++|++|++++| .++.++..
T Consensus 73 ~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~~---- 141 (597)
T 3oja_B 73 SFRQVELLNLNDLQ-IEEIDTY---AFAYAHTIQKLYMGFN-AIRYLPPH-VFQNVPLLTVLVLERN-DLSSLPRG---- 141 (597)
T ss_dssp HCCCCSEEECTTSC-CCEECTT---TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTT----
T ss_pred cCCCCcEEECCCCC-CCCCChH---HhcCCCCCCEEECCCC-cCCCCCHH-HHcCCCCCCEEEeeCC-CCCCCCHH----
Confidence 36677777776554 3332221 2445667777777665 35553333 2366677777777766 55554431
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccc--------------cc
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYM--------------TT 182 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~--------------~~ 182 (320)
....+++|++|+++++ .+..+++.. +..+++|++|+++++. ++.++...+..-.. ..
T Consensus 142 -----~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 142 -----IFHNTPKLTTLSMSNN-NLERIEDDT--FQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp -----TTTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTT
T ss_pred -----HhccCCCCCEEEeeCC-cCCCCChhh--hhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCch
Confidence 1122356666666665 344443322 3445666666665542 33222111100000 00
Q ss_pred cc-----------cccccccChhHHh--hcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCC
Q 041021 183 DN-----------KEAQKLKSEENLL--VANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSK 242 (320)
Q Consensus 183 ~~-----------~~~~~l~~l~~L~--~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~ 242 (320)
.. .......+++.|. .+..... .. +..+++|+.+.+.++... ..+++|+.|+++++ .
T Consensus 213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 289 (597)
T 3oja_B 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-R 289 (597)
T ss_dssp CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-C
T ss_pred hheeeccCCcccccccccCCCCCEEECCCCCCCCC-hh-hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-C
Confidence 00 0000001111110 0111111 11 667778888877665432 56778888888886 6
Q ss_pred cccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccccccceeecccccccccceeEecccceeec
Q 041021 243 LQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLECLGL 319 (320)
Q Consensus 243 l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 319 (320)
++.++.....+++|+.|++++| .++.+|.. ...+++|++|++++|. +..+ ....+++|+.|+|
T Consensus 290 l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~--~~~l~~L~~L~L~~N~-l~~~----------~~~~~~~L~~L~l 352 (597)
T 3oja_B 290 LVALNLYGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTL----------KLSTHHTLKNLTL 352 (597)
T ss_dssp CCEEECSSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCC----------CCCTTCCCSEEEC
T ss_pred CCCCCcccccCCCCcEEECCCC-CCCccCcc--cccCCCCCEEECCCCC-CCCc----------ChhhcCCCCEEEe
Confidence 6677766667888888888886 46666542 3567888888888874 2222 1224667777765
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=1.7e-14 Score=127.73 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=28.5
Q ss_pred cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccc-cccCcchhhhccccCEEeEccc
Q 041021 227 KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLI-NLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~l~~C 290 (320)
..+++|+.|+++++. ++..++....+++|++|+++++. ++ .+|. ....+++|++|+++++
T Consensus 218 ~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~--~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNR-IYGTLPQ--GLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSC-CEECCCG--GGGGCTTCCEEECCSS
T ss_pred hcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCc-ccCcCCh--HHhcCcCCCEEECcCC
Confidence 344555555555542 22222223445566666665543 33 2222 2234555666666555
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.58 E-value=6.3e-14 Score=134.97 Aligned_cols=222 Identities=15% Similarity=0.103 Sum_probs=112.2
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +..++. ....+++|++|++.++ .+....+.. +..+++|++|++++|.....++.
T Consensus 276 ~l~~L~~L~l~~n~-l~~lp~----~l~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~----- 343 (606)
T 3t6q_A 276 CFSGLQELDLTATH-LSELPS----GLVGLSTLKKLVLSAN-KFENLCQIS-ASNFPSLTHLSIKGNTKRLELGT----- 343 (606)
T ss_dssp TCTTCSEEECTTSC-CSCCCS----SCCSCTTCCEEECTTC-CCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCS-----
T ss_pred cccCCCEEeccCCc-cCCCCh----hhcccccCCEEECccC-CcCcCchhh-hhccCcCCEEECCCCCcccccch-----
Confidence 45677777777653 443322 2345677777777776 344433332 36677777777777733223322
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
.....+++|++|+++++ .+..+......+..+++|++++++++. +..++...+ ..+.+++.|
T Consensus 344 ----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~------------~~l~~L~~L 405 (606)
T 3t6q_A 344 ----GCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAF------------KECPQLELL 405 (606)
T ss_dssp ----STTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTT------------TTCTTCSEE
T ss_pred ----hhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHh------------cCCccCCeE
Confidence 11223467777777776 333332101024557777777777663 222221111 111122211
Q ss_pred h--hcccccc-hHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCccc-cc--CCccCCCCccEEeecC
Q 041021 197 L--VANQIHL-FDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQK-LV--PTSWHLENLATLEVSK 263 (320)
Q Consensus 197 ~--~~~~~~~-~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~-l~--~~~~~~~~L~~L~l~~ 263 (320)
. .+..... |...+..+++|+.+.+.++... ..+++|+.|+++++.-... ++ .....+++|++|++++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 0 0111000 1011455666666666554321 4466777777777643221 11 2345667777777777
Q ss_pred ccccccccCcchhhhccccCEEeEccc
Q 041021 264 CHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 264 c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
| +++.++... ...+++|++|++++|
T Consensus 486 n-~l~~~~~~~-~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 486 C-DLSSIDQHA-FTSLKMMNHVDLSHN 510 (606)
T ss_dssp S-CCCEECTTT-TTTCTTCCEEECCSS
T ss_pred C-ccCccChhh-hccccCCCEEECCCC
Confidence 5 355554322 345677777777776
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=1.6e-13 Score=127.48 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=56.6
Q ss_pred hcCCCCCceeccccccCc-------cccCccceEEEccCCCcccc-cCCccCCCCccEEeecCccccccccCcchhhhcc
Q 041021 209 LSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHGLINLLTLSTSESLV 280 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 280 (320)
+.++++|+.+.+.++... ..+++|+.|+++++ .++.+ +..+..+++|++|+++++ +++.++.. ....++
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~ 395 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDG-IFDRLT 395 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCT
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHh-HhccCC
Confidence 667788888877765432 56788888888887 44554 445677888888888884 57777653 345778
Q ss_pred ccCEEeEccc
Q 041021 281 NLERMKITDC 290 (320)
Q Consensus 281 ~L~~L~l~~C 290 (320)
+|++|+++++
T Consensus 396 ~L~~L~l~~N 405 (455)
T 3v47_A 396 SLQKIWLHTN 405 (455)
T ss_dssp TCCEEECCSS
T ss_pred cccEEEccCC
Confidence 8888888765
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.7e-13 Score=128.21 Aligned_cols=241 Identities=20% Similarity=0.185 Sum_probs=147.2
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
+|++|+|+++. ++.+. .. ....+++|++|+++++. +..+.. .....+++|++|++.++ .+
T Consensus 81 ~L~~L~L~~n~-l~~~~---~~-----------~~~~l~~L~~L~Ls~n~-i~~~~~---~~~~~l~~L~~L~l~~n-~l 140 (477)
T 2id5_A 81 NLRTLGLRSNR-LKLIP---LG-----------VFTGLSNLTKLDISENK-IVILLD---YMFQDLYNLKSLEVGDN-DL 140 (477)
T ss_dssp TCCEEECCSSC-CCSCC---TT-----------SSTTCTTCCEEECTTSC-CCEECT---TTTTTCTTCCEEEECCT-TC
T ss_pred cCCEEECCCCc-CCccC---cc-----------cccCCCCCCEEECCCCc-cccCCh---hHccccccCCEEECCCC-cc
Confidence 47777887753 44331 11 12246888888887654 333221 12456778888888775 45
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEe
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLI 160 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~ 160 (320)
....+.. +..+++|++|++++| .++.++... ...+++|+.|+++++ .+..+... .+..+++|++|+
T Consensus 141 ~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~---------l~~l~~L~~L~l~~n-~i~~~~~~--~~~~l~~L~~L~ 206 (477)
T 2id5_A 141 VYISHRA-FSGLNSLEQLTLEKC-NLTSIPTEA---------LSHLHGLIVLRLRHL-NINAIRDY--SFKRLYRLKVLE 206 (477)
T ss_dssp CEECTTS-STTCTTCCEEEEESC-CCSSCCHHH---------HTTCTTCCEEEEESC-CCCEECTT--CSCSCTTCCEEE
T ss_pred ceeChhh-ccCCCCCCEEECCCC-cCcccChhH---------hcccCCCcEEeCCCC-cCcEeChh--hcccCcccceee
Confidence 5544433 367788888888877 555543311 112467777777776 44444432 245577777777
Q ss_pred eecCCCCCccccCccccccccccccccccccChhHH--hhcccccchHHHhcCCCCCceeccccccCc-------cccCc
Q 041021 161 IENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL--LVANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFAN 231 (320)
Q Consensus 161 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~ 231 (320)
+++|+.+..++...+. ..+++.| ..+....+|...+..+++|+.+.+.++... ..+++
T Consensus 207 l~~~~~~~~~~~~~~~-------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLY-------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273 (477)
T ss_dssp EECCTTCCEECTTTTT-------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred CCCCccccccCccccc-------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence 7777666555433211 0112211 111222333222778888998888765432 56789
Q ss_pred cceEEEccCCCcccc-cCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 232 LKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 232 L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
|+.|++.++ .++.+ +..+..+++|+.|+++++ +++.++.. ....+++|++|++++++
T Consensus 274 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 274 LQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred CCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCCC
Confidence 999999987 45554 445678899999999996 67777663 34578999999998754
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.56 E-value=1.5e-13 Score=122.47 Aligned_cols=212 Identities=16% Similarity=0.149 Sum_probs=116.0
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|+.|+++++. ++.+... ....+++|++|++.++ .+....+.. +..+++|++|+++++ .++.++.
T Consensus 52 ~~l~~L~L~~n~-i~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~------- 117 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIKDG---DFKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKN-QLKELPE------- 117 (330)
T ss_dssp TTCCEEECCSSC-CCCBCTT---TTTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCSBCCS-------
T ss_pred CCCeEEECCCCc-CCEeChh---hhccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCC-cCCccCh-------
Confidence 567777777653 4443221 2456778888888776 455544443 367788888888777 5665533
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh-
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL- 197 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~- 197 (320)
..+++|++|+++++ .+..++.. .+..+++|++++++++. ++....... ....+.+++.|.
T Consensus 118 -----~~~~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~----------~~~~l~~L~~L~l 178 (330)
T 1xku_A 118 -----KMPKTLQELRVHEN-EITKVRKS--VFNGLNQMIVVELGTNP-LKSSGIENG----------AFQGMKKLSYIRI 178 (330)
T ss_dssp -----SCCTTCCEEECCSS-CCCBBCHH--HHTTCTTCCEEECCSSC-CCGGGBCTT----------GGGGCTTCCEEEC
T ss_pred -----hhcccccEEECCCC-cccccCHh--HhcCCccccEEECCCCc-CCccCcChh----------hccCCCCcCEEEC
Confidence 12367777777766 44444332 13456777777776653 221100000 001111222110
Q ss_pred -hcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccC-CccCCCCccEEeecCccccc
Q 041021 198 -VANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVP-TSWHLENLATLEVSKCHGLI 268 (320)
Q Consensus 198 -~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~ 268 (320)
.+....+|.. -.++|+.+.+.++... ..+++|+.|+++++ .++.+++ .+..+++|++|+++++ +++
T Consensus 179 ~~n~l~~l~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 253 (330)
T 1xku_A 179 ADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLV 253 (330)
T ss_dssp CSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCS
T ss_pred CCCccccCCcc---ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCc
Confidence 1111122211 1245666655543221 45677888888776 3454443 4566788888888876 466
Q ss_pred cccCcchhhhccccCEEeEccc
Q 041021 269 NLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 269 ~l~~~~~~~~l~~L~~L~l~~C 290 (320)
.+|. ....+++|++|+++++
T Consensus 254 ~lp~--~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 254 KVPG--GLADHKYIQVVYLHNN 273 (330)
T ss_dssp SCCT--TTTTCSSCCEEECCSS
T ss_pred cCCh--hhccCCCcCEEECCCC
Confidence 6654 2356778888888876
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=5.6e-14 Score=135.30 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=84.4
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++++.|++.++. +..++.. ....+++|+.|++.++ .+...++.. +..+++|++|++++| .++.+++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~---~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~----- 116 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAA---LLDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPP----- 116 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTH---HHHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCCCT-----
T ss_pred cCCCceEEEeeCCC-CCCcCHH---HHccCCCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCC-cCCCCCH-----
Confidence 46789999998754 4443221 1356899999999997 577755544 488999999999999 6777654
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCcccc
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTS 172 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~ 172 (320)
.....+++|++|+++++ .+..++... +..+++|++|+++++. +..++.
T Consensus 117 ----~~~~~l~~L~~L~L~~n-~l~~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~~ 164 (597)
T 3oja_B 117 ----HVFQNVPLLTVLVLERN-DLSSLPRGI--FHNTPKLTTLSMSNNN-LERIED 164 (597)
T ss_dssp ----TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSC-CCBCCT
T ss_pred ----HHHcCCCCCCEEEeeCC-CCCCCCHHH--hccCCCCCEEEeeCCc-CCCCCh
Confidence 11234599999999998 677776532 4679999999999874 454443
No 21
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=6.7e-14 Score=118.96 Aligned_cols=196 Identities=18% Similarity=0.165 Sum_probs=111.1
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|++|+++++. ++.+... ....+++|++|++.++..+..+.+.. +..+++|++|++++|..++.++..
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~---~~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~------ 99 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSH---AFSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPD------ 99 (239)
T ss_dssp TTCCEEEEESCC-CSEECTT---TTTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTT------
T ss_pred CcccEEEEeCCc-ceEECHH---HccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHH------
Confidence 367777777644 4443322 24557778888887764466644333 367778888888775577776531
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCcc---EEeeecCCCCCccccCccccccccccccccccccChhH
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLE---YLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEEN 195 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~---~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 195 (320)
. ...+++|++|+++++ ++..++. +..+++|+ ++++++++.++.++...
T Consensus 100 --~-f~~l~~L~~L~l~~n-~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~--------------------- 150 (239)
T 2xwt_C 100 --A-LKELPLLKFLGIFNT-GLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNA--------------------- 150 (239)
T ss_dssp --S-EECCTTCCEEEEEEE-CCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTT---------------------
T ss_pred --H-hCCCCCCCEEeCCCC-CCccccc----cccccccccccEEECCCCcchhhcCccc---------------------
Confidence 1 113477888888776 4555543 23355555 77777775565554321
Q ss_pred HhhcccccchHHHhcCCCCCc-eeccccccCc------cccCccceEEEccCCCcccccCC-ccCC-CCccEEeecCccc
Q 041021 196 LLVANQIHLFDEKLSGLHKVQ-HLWKENAESN------KVFANLKSLEIFECSKLQKLVPT-SWHL-ENLATLEVSKCHG 266 (320)
Q Consensus 196 L~~~~~~~~~~~li~~~~~L~-~l~~~~~~~~------~~~~~L~~L~i~~c~~l~~l~~~-~~~~-~~L~~L~l~~c~~ 266 (320)
+.++++|+ .+.+.++... ...++|+.|++.+++.++.++.. ...+ ++|+.|++++ ++
T Consensus 151 -------------~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~ 216 (239)
T 2xwt_C 151 -------------FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TS 216 (239)
T ss_dssp -------------TTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CC
T ss_pred -------------ccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-Cc
Confidence 44455566 5555443221 11246666666666556555432 3455 6666777666 34
Q ss_pred cccccCcchhhhccccCEEeEccccc
Q 041021 267 LINLLTLSTSESLVNLERMKITDCKM 292 (320)
Q Consensus 267 l~~l~~~~~~~~l~~L~~L~l~~C~~ 292 (320)
++.++.. .+++|+.|++.++..
T Consensus 217 l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 217 VTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCCCT----TCTTCSEEECTTC--
T ss_pred cccCChh----HhccCceeeccCccC
Confidence 5555442 445666666666543
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.55 E-value=5.4e-14 Score=139.29 Aligned_cols=81 Identities=16% Similarity=0.059 Sum_probs=45.3
Q ss_pred hcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccc
Q 041021 209 LSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVN 281 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 281 (320)
+..+++|+.+.+.++... ..+++|+.|++++|.-...+|..+..+++|++|++++|.-...+|. ....+++
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~ 539 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRS 539 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTT
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCC
Confidence 555666666665543221 4556666666666644445555555666666666666543334432 2345566
Q ss_pred cCEEeEcccc
Q 041021 282 LERMKITDCK 291 (320)
Q Consensus 282 L~~L~l~~C~ 291 (320)
|++|++++|+
T Consensus 540 L~~L~Ls~N~ 549 (768)
T 3rgz_A 540 LIWLDLNTNL 549 (768)
T ss_dssp CCEEECCSSE
T ss_pred CCEEECCCCc
Confidence 6666666664
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.54 E-value=1.6e-13 Score=132.07 Aligned_cols=133 Identities=21% Similarity=0.211 Sum_probs=72.0
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
+|++|+++++ .++.++. . ...+++|++|+++++. +..+.. .....+++|++|++.++...
T Consensus 279 ~L~~L~l~~n-~l~~lp~----~-----------l~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 279 GLQELDLTAT-HLSELPS----G-----------LVGLSTLKKLVLSANK-FENLCQ---ISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp TCSEEECTTS-CCSCCCS----S-----------CCSCTTCCEEECTTCC-CSBGGG---GCGGGCTTCSEEECCSCSSC
T ss_pred CCCEEeccCC-ccCCCCh----h-----------hcccccCCEEECccCC-cCcCch---hhhhccCcCCEEECCCCCcc
Confidence 4677888776 3443311 1 1246788888887664 333222 12455677888877776433
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEe
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLI 160 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~ 160 (320)
.. .+...+..+++|++|++++| .++.+... ......+++|++|+++++ .+..+.+.. +..+++|++++
T Consensus 339 ~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~ 406 (606)
T 3t6q_A 339 LE-LGTGCLENLENLRELDLSHD-DIETSDCC-------NLQLRNLSHLQSLNLSYN-EPLSLKTEA--FKECPQLELLD 406 (606)
T ss_dssp CB-CCSSTTTTCTTCCEEECCSS-CCCEEEES-------TTTTTTCTTCCEEECCSC-SCEEECTTT--TTTCTTCSEEE
T ss_pred cc-cchhhhhccCcCCEEECCCC-ccccccCc-------chhcccCCCCCEEECCCC-cCCcCCHHH--hcCCccCCeEE
Confidence 33 33333467777777777777 45544210 011123466777777666 333333222 34566666666
Q ss_pred eecCC
Q 041021 161 IENCP 165 (320)
Q Consensus 161 l~~c~ 165 (320)
++++.
T Consensus 407 l~~n~ 411 (606)
T 3t6q_A 407 LAFTR 411 (606)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 66553
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=2.2e-13 Score=118.83 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=134.6
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
.++|++|+++++. +..+... ....+++|++|++.++ .+....+.. +..+++|++|+++++..++.++.
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~---~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~------ 98 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAA---SFRACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLRSVDP------ 98 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTT---TTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCCCCCT------
T ss_pred CCCceEEEeeCCc-CCccCHH---HcccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCccccCH------
Confidence 3578999998654 4443322 2466889999999886 566654443 47789999999998865776643
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL 197 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 197 (320)
.. ...+++|++|+++++ .+..+.+. .+..+++|++|+++++. ++.++...
T Consensus 99 --~~-~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~----------------------- 148 (285)
T 1ozn_A 99 --AT-FHGLGRLHTLHLDRC-GLQELGPG--LFRGLAALQYLYLQDNA-LQALPDDT----------------------- 148 (285)
T ss_dssp --TT-TTTCTTCCEEECTTS-CCCCCCTT--TTTTCTTCCEEECCSSC-CCCCCTTT-----------------------
T ss_pred --HH-hcCCcCCCEEECCCC-cCCEECHh--HhhCCcCCCEEECCCCc-ccccCHhH-----------------------
Confidence 11 223588999999887 45555433 25668889999988863 44443210
Q ss_pred hcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccc-cCCccCCCCccEEeecCcccccc
Q 041021 198 VANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHGLIN 269 (320)
Q Consensus 198 ~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~ 269 (320)
+..+++|+.+.+.++... ..+++|+.|+++++. ++.+ +..+..+++|++|+++++ +++.
T Consensus 149 -----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~ 215 (285)
T 1ozn_A 149 -----------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSA 215 (285)
T ss_dssp -----------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred -----------hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCc
Confidence 455667777766654322 467889999999874 4444 556678899999999986 5777
Q ss_pred ccCcchhhhccccCEEeEcccc
Q 041021 270 LLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 270 l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
++.. ....+++|++|++++++
T Consensus 216 ~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 216 LPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCHH-HHTTCTTCCEEECCSSC
T ss_pred CCHH-HcccCcccCEEeccCCC
Confidence 6553 34578899999998764
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=1.4e-13 Score=130.91 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=87.5
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
+|++|+++++. ++.+.. .. ...+++|++|+++++. +..+... ....+++|++|+++++ .+
T Consensus 27 ~L~~L~Ls~n~-l~~~~~---~~-----------~~~l~~L~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~Ls~n-~l 86 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGH---GD-----------LRACANLQVLILKSSR-INTIEGD---AFYSLGSLEHLDLSDN-HL 86 (549)
T ss_dssp TCCEEECCSSC-CCEECS---ST-----------TSSCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECTTS-CC
T ss_pred CccEEECcCCc-cCccCh---hh-----------hhcCCcccEEECCCCC-cCccChh---hccccccCCEEECCCC-cc
Confidence 36778887764 554411 11 2347889999998764 4443322 2567889999999987 56
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEe
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLI 160 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~ 160 (320)
...++. .+..+++|++|++++| .++.++. ......+++|++|+++++..+..++... +..+++|++|+
T Consensus 87 ~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~--------~~~~~~l~~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~L~ 154 (549)
T 2z81_A 87 SSLSSS-WFGPLSSLKYLNLMGN-PYQTLGV--------TSLFPNLTNLQTLRIGNVETFSEIRRID--FAGLTSLNELE 154 (549)
T ss_dssp CSCCHH-HHTTCTTCCEEECTTC-CCSSSCS--------SCSCTTCTTCCEEEEEESSSCCEECTTT--TTTCCEEEEEE
T ss_pred CccCHH-HhccCCCCcEEECCCC-cccccch--------hhhhhccCCccEEECCCCccccccCHhh--hhcccccCeee
Confidence 664443 3578899999999988 5554321 1112345788888888886666665433 56688888888
Q ss_pred eecCC
Q 041021 161 IENCP 165 (320)
Q Consensus 161 l~~c~ 165 (320)
++++.
T Consensus 155 L~~n~ 159 (549)
T 2z81_A 155 IKALS 159 (549)
T ss_dssp EEETT
T ss_pred ccCCc
Confidence 88764
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.53 E-value=1.8e-13 Score=124.75 Aligned_cols=224 Identities=15% Similarity=0.155 Sum_probs=131.4
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +..+... ....+++|++|++.++ .+.. .+...+..+++|++|++++| .++.+++.
T Consensus 91 ~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~-l~~~~~~~l~~L~~L~L~~n-~l~~~~~~---- 159 (390)
T 3o6n_A 91 YAHTIQKLYMGFNA-IRYLPPH---VFQNVPLLTVLVLERN-DLSS-LPRGIFHNTPKLTTLSMSNN-NLERIEDD---- 159 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CCCBCCTT----
T ss_pred CCCCcCEEECCCCC-CCcCCHH---HhcCCCCCCEEECCCC-ccCc-CCHHHhcCCCCCcEEECCCC-ccCccChh----
Confidence 47888888888765 4432221 2456788888888886 5665 34434577888888888888 56555331
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCc-------------------cEEeeecCCCCCccccCcccc
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKL-------------------EYLIIENCPDMETFTSNSTFV 177 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L-------------------~~l~l~~c~~l~~~~~~~~~~ 177 (320)
. ...+++|++|+++++ .+..++. ..+++| ++++++++. +..++.... .
T Consensus 160 ----~-~~~l~~L~~L~l~~n-~l~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~ 226 (390)
T 3o6n_A 160 ----T-FQATTSLQNLQLSSN-RLTHVDL-----SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPVN-V 226 (390)
T ss_dssp ----T-TSSCTTCCEEECCSS-CCSBCCG-----GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECCCC-S
T ss_pred ----h-ccCCCCCCEEECCCC-cCCcccc-----ccccccceeecccccccccCCCCcceEEECCCCe-eeecccccc-c
Confidence 1 122366777766665 3333221 123333 333333321 111111000 0
Q ss_pred ccccc--------cccccccccChhHHh--hcccccc-hHHHhcCCCCCceeccccccCc------cccCccceEEEccC
Q 041021 178 LYMTT--------DNKEAQKLKSEENLL--VANQIHL-FDEKLSGLHKVQHLWKENAESN------KVFANLKSLEIFEC 240 (320)
Q Consensus 178 ~~~~~--------~~~~~~~l~~l~~L~--~~~~~~~-~~~li~~~~~L~~l~~~~~~~~------~~~~~L~~L~i~~c 240 (320)
..... .......+.+++.|. .+....+ |.. +..+++|+.+.+.++... ..+++|+.|+++++
T Consensus 227 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp SCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred cccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence 00000 000012222333321 1222222 233 788999999998876543 46899999999998
Q ss_pred CCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 241 SKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 241 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
.++.++.....+++|++|++++++ ++.++ ...+++|++|++++++
T Consensus 306 -~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 306 -HLLHVERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred -cceecCccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 677887777789999999999965 77774 2467899999998853
No 27
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.52 E-value=6.4e-14 Score=124.25 Aligned_cols=210 Identities=18% Similarity=0.158 Sum_probs=115.5
Q ss_pred eccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccc
Q 041021 36 IGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEEL 115 (320)
Q Consensus 36 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 115 (320)
..+++|++|+++++. +..+... ....+++|++|+++++ .+....+ +..+++|++|++++| .++.++.
T Consensus 31 ~~~~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n-~l~~l~~---- 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-LSQISAA---DLAPFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNN-YVQELLV---- 97 (317)
T ss_dssp TTGGGCSEEECTTSC-CCCCCHH---HHTTCTTCCEEECTTS-CCEEEEE---ETTCTTCCEEECCSS-EEEEEEE----
T ss_pred ccCCCCCEEECcCCc-cCcCCHH---HhhCCCcCCEEECCCC-cCCcchh---hhhcCCCCEEECcCC-ccccccC----
Confidence 346788888888764 4432211 1346788888888886 4544343 467888888888888 6666543
Q ss_pred ccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhH
Q 041021 116 SADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEEN 195 (320)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 195 (320)
.++|++|+++++ .+..++... +++|++++++++. ++.++...+ ..+.+++.
T Consensus 98 ----------~~~L~~L~l~~n-~l~~~~~~~-----~~~L~~L~l~~N~-l~~~~~~~~------------~~l~~L~~ 148 (317)
T 3o53_A 98 ----------GPSIETLHAANN-NISRVSCSR-----GQGKKNIYLANNK-ITMLRDLDE------------GCRSRVQY 148 (317)
T ss_dssp ----------CTTCCEEECCSS-CCSEEEECC-----CSSCEEEECCSSC-CCSGGGBCT------------GGGSSEEE
T ss_pred ----------CCCcCEEECCCC-ccCCcCccc-----cCCCCEEECCCCC-CCCccchhh------------hccCCCCE
Confidence 256666666665 444443322 5666666666553 333322111 11111111
Q ss_pred Hh--hcccccch-HHHhcCCCCCceeccccccCc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCcccc
Q 041021 196 LL--VANQIHLF-DEKLSGLHKVQHLWKENAESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGL 267 (320)
Q Consensus 196 L~--~~~~~~~~-~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l 267 (320)
|. .+....++ ..+...+++|+.+.++++... ..+++|+.|+++++ .++.+++....+++|++|+++++ ++
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l 226 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KL 226 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CC
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cc
Confidence 10 01111111 111234566666666554332 34667777777765 55566555566677777777774 45
Q ss_pred ccccCcchhhhccccCEEeEcccc
Q 041021 268 INLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 268 ~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
+.++.. ...+++|++|++++++
T Consensus 227 ~~l~~~--~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 227 VLIEKA--LRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CEECTT--CCCCTTCCEEECTTCC
T ss_pred cchhhH--hhcCCCCCEEEccCCC
Confidence 565442 2455677777776653
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=3.6e-13 Score=134.11 Aligned_cols=253 Identities=13% Similarity=0.102 Sum_probs=145.4
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchh--hhcCCC--C-CCccCCCccEEeec
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQE--IWHGQA--L-PVSFFNNLAQLVVD 75 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~--~-~~~~~~~L~~L~l~ 75 (320)
+|+.|+|++|.-...++ .. ...+++|+.|+++++..+.. ++..-. . ....+++|+.|++.
T Consensus 492 ~L~~L~Ls~N~l~~~iP----~~-----------l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLP----DF-----------LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TCCEEEEESCTTCCSCC----GG-----------GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred CCCEEECcCCCCCccCh----HH-----------HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 47788888876554441 11 22478999999988763332 211000 0 23456789999998
Q ss_pred cCcCccccCch-hHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCC
Q 041021 76 DCTNMSSAIPA-NLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELP 154 (320)
Q Consensus 76 ~c~~l~~~~~~-~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 154 (320)
++ .+.. +|. ..+..+++|++|++++| .++.++. ...+++|+.|+++++ .+..++. .+..++
T Consensus 557 ~N-~L~~-ip~~~~l~~L~~L~~L~Ls~N-~l~~lp~-----------~~~L~~L~~L~Ls~N-~l~~lp~---~l~~l~ 618 (876)
T 4ecn_A 557 YN-NLEE-FPASASLQKMVKLGLLDCVHN-KVRHLEA-----------FGTNVKLTDLKLDYN-QIEEIPE---DFCAFT 618 (876)
T ss_dssp SS-CCCB-CCCHHHHTTCTTCCEEECTTS-CCCBCCC-----------CCTTSEESEEECCSS-CCSCCCT---TSCEEC
T ss_pred CC-cCCc-cCChhhhhcCCCCCEEECCCC-Ccccchh-----------hcCCCcceEEECcCC-ccccchH---HHhhcc
Confidence 87 4554 443 23578889999999888 5666542 123467777777766 3444443 234566
Q ss_pred C-ccEEeeecCCCCCccccCccccc---cccc----cc--cccc---------cccChhHH--hhcccccchHHHhcCCC
Q 041021 155 K-LEYLIIENCPDMETFTSNSTFVL---YMTT----DN--KEAQ---------KLKSEENL--LVANQIHLFDEKLSGLH 213 (320)
Q Consensus 155 ~-L~~l~l~~c~~l~~~~~~~~~~~---~~~~----~~--~~~~---------~l~~l~~L--~~~~~~~~~~~li~~~~ 213 (320)
+ |++|+++++. ++.+|....... +... .. .... ...+++.| ..+....+|..++..++
T Consensus 619 ~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~ 697 (876)
T 4ecn_A 619 DQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697 (876)
T ss_dssp TTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC
T ss_pred ccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC
Confidence 6 7777776654 444432100000 0000 00 0000 11123332 12333456665456788
Q ss_pred CCceeccccccCc-------c-------ccCccceEEEccCCCcccccCCcc--CCCCccEEeecCccccccccCcchhh
Q 041021 214 KVQHLWKENAESN-------K-------VFANLKSLEIFECSKLQKLVPTSW--HLENLATLEVSKCHGLINLLTLSTSE 277 (320)
Q Consensus 214 ~L~~l~~~~~~~~-------~-------~~~~L~~L~i~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~~ 277 (320)
+|+.+.+.++... . .+++|+.|++++| +++.++.... .+++|+.|+++++ .++.+|.. ..
T Consensus 698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~--l~ 773 (876)
T 4ecn_A 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQ--PL 773 (876)
T ss_dssp CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCG--GG
T ss_pred CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchh--hh
Confidence 8888877664332 1 1237888888887 6667776665 7888888888885 46666542 34
Q ss_pred hccccCEEeEcccc
Q 041021 278 SLVNLERMKITDCK 291 (320)
Q Consensus 278 ~l~~L~~L~l~~C~ 291 (320)
.+++|++|++++++
T Consensus 774 ~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 774 NSSQLKAFGIRHQR 787 (876)
T ss_dssp GCTTCCEEECCCCB
T ss_pred cCCCCCEEECCCCC
Confidence 77888888887644
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.51 E-value=4.2e-14 Score=125.29 Aligned_cols=221 Identities=13% Similarity=0.045 Sum_probs=146.9
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccce-ecccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEE-VLHLEEL 115 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~-i~~~~~~ 115 (320)
.+++|++|+++++.++..... .....+++|++|+++++ .+....|.. +..+++|++|++++| .++. ++.
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p---~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~---- 143 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIP---PAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPP---- 143 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCC---GGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSS-EEESCCCG----
T ss_pred CCCCCCeeeCCCCCcccccCC---hhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCCh----
Confidence 489999999986555553211 22567899999999987 455445554 478999999999998 5553 322
Q ss_pred ccccCCCCCcCCccCeEeecCCcccccccCCCccccCCC-CccEEeeecCCCCCccccCccccccccccccccccccChh
Q 041021 116 SADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELP-KLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEE 194 (320)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~-~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 194 (320)
....+++|++|+++++.--..++. .+..++ +|++++++++.--..++.. + ..+. ++
T Consensus 144 ------~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~~~~~~-~------------~~l~-L~ 200 (313)
T 1ogq_A 144 ------SISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIPPT-F------------ANLN-LA 200 (313)
T ss_dssp ------GGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEEECCGG-G------------GGCC-CS
T ss_pred ------HHhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeeccCChH-H------------hCCc-cc
Confidence 122458999999998843224443 356676 8999999886421122211 1 0111 22
Q ss_pred HHh--hcccc-cchHHHhcCCCCCceeccccccCc------cccCccceEEEccCCCcccccCCccCCCCccEEeecCcc
Q 041021 195 NLL--VANQI-HLFDEKLSGLHKVQHLWKENAESN------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCH 265 (320)
Q Consensus 195 ~L~--~~~~~-~~~~~li~~~~~L~~l~~~~~~~~------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 265 (320)
.|. .+... ..|.. +..+++|+.+.+.++... ..+++|+.|+++++.-...++..+..+++|++|++++++
T Consensus 201 ~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EEECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 210 11111 12222 778889999988765332 567899999999986544777778889999999999976
Q ss_pred ccccccCcchhhhccccCEEeEccccccc
Q 041021 266 GLINLLTLSTSESLVNLERMKITDCKMME 294 (320)
Q Consensus 266 ~l~~l~~~~~~~~l~~L~~L~l~~C~~l~ 294 (320)
--..+|.. ..+++|+.+++.+++.+.
T Consensus 280 l~~~ip~~---~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 280 LCGEIPQG---GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEEECCCS---TTGGGSCGGGTCSSSEEE
T ss_pred ccccCCCC---ccccccChHHhcCCCCcc
Confidence 44466653 578999999999987664
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.51 E-value=7e-13 Score=123.50 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=35.1
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCccccee
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEV 109 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 109 (320)
+++|++|+++++. +..+ ....+++|++|+++++ .+... + +..+++|++|++++| .++.+
T Consensus 63 l~~L~~L~Ls~n~-l~~~------~~~~l~~L~~L~Ls~N-~l~~~-~---~~~l~~L~~L~L~~N-~l~~l 121 (457)
T 3bz5_A 63 LTGLTKLICTSNN-ITTL------DLSQNTNLTYLACDSN-KLTNL-D---VTPLTKLTYLNCDTN-KLTKL 121 (457)
T ss_dssp CTTCSEEECCSSC-CSCC------CCTTCTTCSEEECCSS-CCSCC-C---CTTCTTCCEEECCSS-CCSCC
T ss_pred cCCCCEEEccCCc-CCeE------ccccCCCCCEEECcCC-CCcee-e---cCCCCcCCEEECCCC-cCCee
Confidence 6777777777653 4332 1345667777777765 34443 2 356677777777766 45443
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.51 E-value=2.5e-13 Score=129.65 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=117.2
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccC-chhHHhhcccCCeEEEccCcccceecccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAI-PANLLWCLNNLAWLEVRNCDSLEEVLHLEEL 115 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 115 (320)
.+++|++|++.++..... .....+++|++|+++++ .+.... ....+..+++|++|++++| .++.++..
T Consensus 323 ~l~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--- 391 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--- 391 (570)
T ss_dssp BCSSCCEEEEESCBSCCB------CCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE---
T ss_pred cccccCEEeCcCCccccc------cccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCC-cccccccc---
Confidence 345566666655442211 11245667777777665 333321 0122456777777777776 45554331
Q ss_pred ccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhH
Q 041021 116 SADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEEN 195 (320)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 195 (320)
...+++|++|+++++ .+....+.. .+..+++|+++++++|.-....+..
T Consensus 392 -------~~~l~~L~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~---------------------- 440 (570)
T 2z63_A 392 -------FLGLEQLEHLDFQHS-NLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGI---------------------- 440 (570)
T ss_dssp -------EETCTTCCEEECTTS-EEESCTTSC-TTTTCTTCCEEECTTSCCEECCTTT----------------------
T ss_pred -------ccccCCCCEEEccCC-ccccccchh-hhhcCCCCCEEeCcCCcccccchhh----------------------
Confidence 123467777777776 333333222 2455677777777776422111111
Q ss_pred HhhcccccchHHHhcCCCCCceeccccccCc--------cccCccceEEEccCCCcccc-cCCccCCCCccEEeecCccc
Q 041021 196 LLVANQIHLFDEKLSGLHKVQHLWKENAESN--------KVFANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHG 266 (320)
Q Consensus 196 L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~--------~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~ 266 (320)
+.++++|+.+.+.++... ..+++|+.|++++|. ++.+ +..+..+++|++|++++| +
T Consensus 441 -------------~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~ 505 (570)
T 2z63_A 441 -------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-Q 505 (570)
T ss_dssp -------------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-C
T ss_pred -------------hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-c
Confidence 566777888777654321 567889999999884 4454 556678889999999986 5
Q ss_pred cccccCcchhhhccccCEEeEcccc
Q 041021 267 LINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 267 l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
++.++.. ....+++|++|++++++
T Consensus 506 l~~~~~~-~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 506 LKSVPDG-IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred CCCCCHH-HhhcccCCcEEEecCCc
Confidence 7777653 34577899999988854
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=4.1e-13 Score=118.25 Aligned_cols=195 Identities=19% Similarity=0.235 Sum_probs=116.3
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccC--chhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAI--PANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
++|++|+++++. ++.+... ....+++|++|++.++ .+.... +.. +..+++|++|+++++ .++.++..
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~~l~~~---- 96 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHG---VFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFN-GVITMSSN---- 96 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTT---TTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSC-SEEEEEEE----
T ss_pred CCCCEEECCCCc-cCccCHh---HhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCC-ccccChhh----
Confidence 589999998765 4443322 2457899999999986 454321 233 356899999999998 66666441
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
...+++|++|+++++ ++..++... .+..+++|++|+++++. +.......
T Consensus 97 ------~~~l~~L~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~---------------------- 145 (306)
T 2z66_A 97 ------FLGLEQLEHLDFQHS-NLKQMSEFS-VFLSLRNLIYLDISHTH-TRVAFNGI---------------------- 145 (306)
T ss_dssp ------EETCTTCCEEECTTS-EEESSTTTT-TTTTCTTCCEEECTTSC-CEECSTTT----------------------
T ss_pred ------cCCCCCCCEEECCCC-cccccccch-hhhhccCCCEEECCCCc-CCccchhh----------------------
Confidence 123589999999987 555554422 35678899999998874 33222110
Q ss_pred hhcccccchHHHhcCCCCCceeccccccCc--------cccCccceEEEccCCCcccc-cCCccCCCCccEEeecCcccc
Q 041021 197 LVANQIHLFDEKLSGLHKVQHLWKENAESN--------KVFANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHGL 267 (320)
Q Consensus 197 ~~~~~~~~~~~li~~~~~L~~l~~~~~~~~--------~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l 267 (320)
+..+++|+.+.+.++... ..+++|+.|+++++ .++.+ +..+..+++|++|+++++ ++
T Consensus 146 ------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l 211 (306)
T 2z66_A 146 ------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NF 211 (306)
T ss_dssp ------------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred ------------cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-cc
Confidence 334455555554432110 34556666666665 33333 333455666666666664 34
Q ss_pred ccccCcchhhhccccCEEeEccc
Q 041021 268 INLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 268 ~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
+.++... ...+++|++|+++++
T Consensus 212 ~~~~~~~-~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 212 FSLDTFP-YKCLNSLQVLDYSLN 233 (306)
T ss_dssp SBCCSGG-GTTCTTCCEEECTTS
T ss_pred CccChhh-ccCcccCCEeECCCC
Confidence 4444322 234566666666665
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.51 E-value=1.9e-13 Score=132.59 Aligned_cols=253 Identities=14% Similarity=0.119 Sum_probs=131.7
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchh--hhcCCC--CCCccCCCccEEeecc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQE--IWHGQA--LPVSFFNNLAQLVVDD 76 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~--~~~~~~~~L~~L~l~~ 76 (320)
+|++|++++|.-...++ .. ...+++|++|+++++..+.. ++..-. .....+++|++|++.+
T Consensus 250 ~L~~L~L~~n~l~~~~p----~~-----------l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLP----TF-----------LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp TCCEEEEECCTTCSSCC----TT-----------TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred CCCEEEecCCcCCccCh----HH-----------HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 47788888875444431 11 12478888888887763332 221100 0012347888888887
Q ss_pred CcCccccCch-hHHhhcccCCeEEEccCcccc-eeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCC
Q 041021 77 CTNMSSAIPA-NLLWCLNNLAWLEVRNCDSLE-EVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELP 154 (320)
Q Consensus 77 c~~l~~~~~~-~~~~~l~~L~~L~i~~c~~l~-~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 154 (320)
| .+.. +|. ..+..+++|++|++++| .++ .++.. ..+++|++|+++++ .+..++. .+..++
T Consensus 315 n-~l~~-ip~~~~l~~l~~L~~L~L~~N-~l~g~ip~~-----------~~l~~L~~L~L~~N-~l~~lp~---~l~~l~ 376 (636)
T 4eco_A 315 N-NLKT-FPVETSLQKMKKLGMLECLYN-QLEGKLPAF-----------GSEIKLASLNLAYN-QITEIPA---NFCGFT 376 (636)
T ss_dssp S-CCSS-CCCHHHHTTCTTCCEEECCSC-CCEEECCCC-----------EEEEEESEEECCSS-EEEECCT---TSEEEC
T ss_pred C-cCCc-cCchhhhccCCCCCEEeCcCC-cCccchhhh-----------CCCCCCCEEECCCC-ccccccH---hhhhhc
Confidence 6 4554 343 23477888888888877 555 44311 12245555555554 3333332 223344
Q ss_pred C-ccEEeeecCCCCCccccCccccc---cccc----cc---cccc----------cccChhHH--hhcccccchHHHhcC
Q 041021 155 K-LEYLIIENCPDMETFTSNSTFVL---YMTT----DN---KEAQ----------KLKSEENL--LVANQIHLFDEKLSG 211 (320)
Q Consensus 155 ~-L~~l~l~~c~~l~~~~~~~~~~~---~~~~----~~---~~~~----------~l~~l~~L--~~~~~~~~~~~li~~ 211 (320)
+ |++|+++++. ++.+|....... .... .. .... ...+++.| ..+....+|..++..
T Consensus 377 ~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 377 EQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455 (636)
T ss_dssp TTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred ccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence 4 5555554442 223322100000 0000 00 0000 11233332 123333555554666
Q ss_pred CCCCceeccccccCc-------cc-------cCccceEEEccCCCcccccCCcc--CCCCccEEeecCccccccccCcch
Q 041021 212 LHKVQHLWKENAESN-------KV-------FANLKSLEIFECSKLQKLVPTSW--HLENLATLEVSKCHGLINLLTLST 275 (320)
Q Consensus 212 ~~~L~~l~~~~~~~~-------~~-------~~~L~~L~i~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~ 275 (320)
+++|+.+.+.++... .. +++|+.|+++++ .++.++.... .+++|++|+++++ +++.+|..
T Consensus 456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-- 531 (636)
T 4eco_A 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQ-- 531 (636)
T ss_dssp TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCG--
T ss_pred CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcChh--
Confidence 778888777664332 11 127888888876 5567776655 7788888888885 45556542
Q ss_pred hhhccccCEEeEcccc
Q 041021 276 SESLVNLERMKITDCK 291 (320)
Q Consensus 276 ~~~l~~L~~L~l~~C~ 291 (320)
...+++|++|++++++
T Consensus 532 ~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQR 547 (636)
T ss_dssp GGGCSSCCEEECCSCB
T ss_pred hhcCCCCCEEECCCCc
Confidence 3467888888886543
No 34
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=3.9e-13 Score=133.09 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=57.4
Q ss_pred hcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccc
Q 041021 209 LSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVN 281 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 281 (320)
+..+++|+.+.++++... ..++.|+.|+++++.-...+|..+..+++|++|+++++.--..+|. ....+++
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~--~l~~l~~ 705 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTM 705 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG--GGGGCCC
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh--HHhCCCC
Confidence 445667777777654321 5678888888888765557777778888888888888654445544 2357788
Q ss_pred cCEEeEccccc
Q 041021 282 LERMKITDCKM 292 (320)
Q Consensus 282 L~~L~l~~C~~ 292 (320)
|++|++++++-
T Consensus 706 L~~L~ls~N~l 716 (768)
T 3rgz_A 706 LTEIDLSNNNL 716 (768)
T ss_dssp CSEEECCSSEE
T ss_pred CCEEECcCCcc
Confidence 88888888743
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.50 E-value=4.6e-13 Score=119.40 Aligned_cols=236 Identities=15% Similarity=0.129 Sum_probs=138.4
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|+.|+++++. +..+... ....+++|++|++.++ .+....+.. +..+++|++|+++++ .++.++.
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~------- 119 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKD---DFKGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKN-HLVEIPP------- 119 (332)
T ss_dssp TTCCEEECCSSC-CCEECTT---TTTTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSS-CCCSCCS-------
T ss_pred CCCeEEECCCCc-CCccCHh---HhhCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCC-cCCccCc-------
Confidence 577778877654 4443221 2456778888888876 466544443 467888888888877 5665533
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCc--cccCccccccccccccccccccChhHH
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET--FTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~--~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
..+++|++|+++++ .+..++.. .+..+++|++++++++. ++. .....+ ..+ .++.|
T Consensus 120 -----~~~~~L~~L~l~~n-~i~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~------------~~l-~L~~L 177 (332)
T 2ft3_A 120 -----NLPSSLVELRIHDN-RIRKVPKG--VFSGLRNMNCIEMGGNP-LENSGFEPGAF------------DGL-KLNYL 177 (332)
T ss_dssp -----SCCTTCCEEECCSS-CCCCCCSG--GGSSCSSCCEEECCSCC-CBGGGSCTTSS------------CSC-CCSCC
T ss_pred -----cccccCCEEECCCC-ccCccCHh--HhCCCccCCEEECCCCc-cccCCCCcccc------------cCC-ccCEE
Confidence 12378888888877 55555442 24568888888887764 322 111111 000 11111
Q ss_pred h--hcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccC-CccCCCCccEEeecCccc
Q 041021 197 L--VANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVP-TSWHLENLATLEVSKCHG 266 (320)
Q Consensus 197 ~--~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~ 266 (320)
. .+....+|.. -.++|+.+.+.++... ..+++|+.|+++++ .++.+++ ....+++|++|+++++ +
T Consensus 178 ~l~~n~l~~l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~ 252 (332)
T 2ft3_A 178 RISEAKLTGIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-K 252 (332)
T ss_dssp BCCSSBCSSCCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-C
T ss_pred ECcCCCCCccCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-c
Confidence 0 1111122221 1246676666554321 56788999999987 5565554 4678899999999986 5
Q ss_pred cccccCcchhhhccccCEEeEccccccceeecccccccccceeEecccceeec
Q 041021 267 LINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLECLGL 319 (320)
Q Consensus 267 l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 319 (320)
++.+|.. ...+++|++|++++++ +..+.... -........+++|+.|++
T Consensus 253 l~~lp~~--l~~l~~L~~L~l~~N~-l~~~~~~~-~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 253 LSRVPAG--LPDLKLLQVVYLHTNN-ITKVGVND-FCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CCBCCTT--GGGCTTCCEEECCSSC-CCBCCTTS-SSCSSCCSSSCCBSEEEC
T ss_pred CeecChh--hhcCccCCEEECCCCC-CCccChhH-ccccccccccccccceEe
Confidence 7777663 4578999999999873 44332110 000011122677777765
No 36
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=1.8e-13 Score=121.33 Aligned_cols=205 Identities=18% Similarity=0.099 Sum_probs=139.0
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
..+++|++|+++++ .+....+. .+..+++|++|++++| .++.+++ ...+++|++|+++++ .+..+
T Consensus 31 ~~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~-----------~~~l~~L~~L~Ls~n-~l~~l 95 (317)
T 3o53_A 31 QSAWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSN-VLYETLD-----------LESLSTLRTLDLNNN-YVQEL 95 (317)
T ss_dssp TTGGGCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTS-CCEEEEE-----------ETTCTTCCEEECCSS-EEEEE
T ss_pred ccCCCCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCC-cCCcchh-----------hhhcCCCCEEECcCC-ccccc
Confidence 34689999999997 67775544 4589999999999999 6766543 124589999999998 56655
Q ss_pred cCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh--hcccccchHHHhcCCCCCceeccc
Q 041021 144 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL--VANQIHLFDEKLSGLHKVQHLWKE 221 (320)
Q Consensus 144 ~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~--~~~~~~~~~~li~~~~~L~~l~~~ 221 (320)
+. .++|++++++++. ++.++... +.+++.|. .+....++...+..+++|+.+.++
T Consensus 96 ~~-------~~~L~~L~l~~n~-l~~~~~~~---------------~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 96 LV-------GPSIETLHAANNN-ISRVSCSR---------------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp EE-------CTTCCEEECCSSC-CSEEEECC---------------CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred cC-------CCCcCEEECCCCc-cCCcCccc---------------cCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 43 5899999998864 55444321 11222221 111112211116667888988887
Q ss_pred cccCc--------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccccc
Q 041021 222 NAESN--------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMM 293 (320)
Q Consensus 222 ~~~~~--------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l 293 (320)
++... ..+++|+.|+++++ .++.++.. ..+++|++|+++++ +++.++.. ...+++|++|+++++ ++
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l 226 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KL 226 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CC
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cc
Confidence 65432 35689999999997 56666443 35899999999996 57777653 457899999999998 45
Q ss_pred ceeecccccccccceeEecccceeecC
Q 041021 294 EEIIQSQVGEEAEDCIVFRKLECLGLD 320 (320)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~L~~L~l~ 320 (320)
..+... ...+++|+.|+|+
T Consensus 227 ~~l~~~--------~~~l~~L~~L~l~ 245 (317)
T 3o53_A 227 VLIEKA--------LRFSQNLEHFDLR 245 (317)
T ss_dssp CEECTT--------CCCCTTCCEEECT
T ss_pred cchhhH--------hhcCCCCCEEEcc
Confidence 544221 2246777777763
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=1.1e-13 Score=121.93 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=126.6
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +..+.... .....+++|++|+++++ .+..+ +.. +..+++|++|+++++ .++.++..
T Consensus 50 ~l~~L~~L~L~~n~-l~~~~~~~-~~~~~~~~L~~L~Ls~n-~i~~l-~~~-~~~l~~L~~L~l~~n-~l~~~~~~---- 119 (306)
T 2z66_A 50 KLTQLTKLSLSSNG-LSFKGCCS-QSDFGTTSLKYLDLSFN-GVITM-SSN-FLGLEQLEHLDFQHS-NLKQMSEF---- 119 (306)
T ss_dssp TCTTCSEEECCSSC-CCEEEEEE-HHHHSCSCCCEEECCSC-SEEEE-EEE-EETCTTCCEEECTTS-EEESSTTT----
T ss_pred ccccCCEEECCCCc-cCcccCcc-cccccccccCEEECCCC-ccccC-hhh-cCCCCCCCEEECCCC-cccccccc----
Confidence 57899999998764 33210000 11234789999999987 45553 333 467899999999998 56655331
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCc--cccCccccccccccccccccccChh
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMET--FTSNSTFVLYMTTDNKEAQKLKSEE 194 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~--~~~~~~~~~~~~~~~~~~~~l~~l~ 194 (320)
.....+++|++|+++++ .+...... .+..+++|++|+++++. +.. ++..
T Consensus 120 ----~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~--------------------- 170 (306)
T 2z66_A 120 ----SVFLSLRNLIYLDISHT-HTRVAFNG--IFNGLSSLEVLKMAGNS-FQENFLPDI--------------------- 170 (306)
T ss_dssp ----TTTTTCTTCCEEECTTS-CCEECSTT--TTTTCTTCCEEECTTCE-EGGGEECSC---------------------
T ss_pred ----hhhhhccCCCEEECCCC-cCCccchh--hcccCcCCCEEECCCCc-cccccchhH---------------------
Confidence 12234589999999988 44444332 25668899999998874 222 1211
Q ss_pred HHhhcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccC-CccCCCCccEEeecCccc
Q 041021 195 NLLVANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVP-TSWHLENLATLEVSKCHG 266 (320)
Q Consensus 195 ~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~ 266 (320)
+..+++|+.+.+.++... ..+++|+.|+++++ .++.++. ....+++|++|++++++
T Consensus 171 --------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~- 234 (306)
T 2z66_A 171 --------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH- 234 (306)
T ss_dssp --------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSC-
T ss_pred --------------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCC-
Confidence 555666777766654322 46678888888886 4555543 34677888888888864
Q ss_pred cccccCcchhhhc-cccCEEeEcccc
Q 041021 267 LINLLTLSTSESL-VNLERMKITDCK 291 (320)
Q Consensus 267 l~~l~~~~~~~~l-~~L~~L~l~~C~ 291 (320)
++..+...+ ..+ ++|++|++++++
T Consensus 235 l~~~~~~~~-~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 235 IMTSKKQEL-QHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred CcccCHHHH-HhhhccCCEEEccCCC
Confidence 555444333 344 478888888753
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=1e-12 Score=122.63 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=55.0
Q ss_pred hcCCCCCceeccccccCc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccC
Q 041021 209 LSGLHKVQHLWKENAESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLE 283 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~ 283 (320)
+..+++|+.+.+.++... ..+++|+.|+++++ .++.+++ ...+++|++|++++| +++.++. ...+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDISP---ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCC-cccCchh---hcCCCCCC
Confidence 666778888877665432 56778888888886 4555544 567888999999886 4666544 35778999
Q ss_pred EEeEccc
Q 041021 284 RMKITDC 290 (320)
Q Consensus 284 ~L~l~~C 290 (320)
+|++++|
T Consensus 313 ~L~L~~n 319 (466)
T 1o6v_A 313 YLTLYFN 319 (466)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 9998887
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.49 E-value=1.4e-13 Score=132.57 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=49.6
Q ss_pred hcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCC-CccEEeecCccccccccC
Q 041021 209 LSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLE-NLATLEVSKCHGLINLLT 272 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~l~~ 272 (320)
+.++++|+.+.+.++... ..+++|+.|+++++ .++.++..+..++ +|++|++++++-..+.+.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 677888999988775432 56789999999998 5788888777776 699999999775555543
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=1.1e-12 Score=131.09 Aligned_cols=133 Identities=16% Similarity=0.111 Sum_probs=84.2
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
++++|+|+++ .++.+.. .. ...+++|+.|+++++.....+... ....+++|++|++.++ .+
T Consensus 25 ~l~~LdLs~N-~i~~i~~---~~-----------~~~l~~L~~LdLs~n~~~~~i~~~---~f~~L~~L~~L~Ls~N-~l 85 (844)
T 3j0a_A 25 TTERLLLSFN-YIRTVTA---SS-----------FPFLEQLQLLELGSQYTPLTIDKE---AFRNLPNLRILDLGSS-KI 85 (844)
T ss_dssp TCCEEEEESC-CCCEECS---SS-----------CSSCCSCSEEEECTTCCCCEECTT---TTSSCTTCCEEECTTC-CC
T ss_pred CcCEEECCCC-cCCccCh---hH-----------CcccccCeEEeCCCCCCccccCHH---HhcCCCCCCEEECCCC-cC
Confidence 4678888875 3554411 11 235788888998887554443222 2567888888888886 46
Q ss_pred cccCchhHHhhcccCCeEEEccCcccce-eccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEE
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEE-VLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYL 159 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~-i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l 159 (320)
....|.. +..+++|++|++++| .++. ++. ......+++|++|+++++ .+..+.... .+.++++|++|
T Consensus 86 ~~~~p~~-~~~l~~L~~L~Ls~n-~l~~~~~~--------~~~~~~L~~L~~L~Ls~N-~l~~~~~~~-~~~~L~~L~~L 153 (844)
T 3j0a_A 86 YFLHPDA-FQGLFHLFELRLYFC-GLSDAVLK--------DGYFRNLKALTRLDLSKN-QIRSLYLHP-SFGKLNSLKSI 153 (844)
T ss_dssp CEECTTS-SCSCSSCCCEECTTC-CCSSCCST--------TCCCSSCSSCCEEEEESC-CCCCCCCCG-GGGTCSSCCEE
T ss_pred cccCHhH-ccCCcccCEeeCcCC-CCCccccc--------CccccccCCCCEEECCCC-cccccccch-hHhhCCCCCEE
Confidence 6654544 478888888888888 5544 222 111224578888888877 444443322 35668888888
Q ss_pred eeecC
Q 041021 160 IIENC 164 (320)
Q Consensus 160 ~l~~c 164 (320)
+++++
T Consensus 154 ~Ls~N 158 (844)
T 3j0a_A 154 DFSSN 158 (844)
T ss_dssp EEESS
T ss_pred ECCCC
Confidence 88775
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=2.2e-13 Score=127.94 Aligned_cols=210 Identities=19% Similarity=0.166 Sum_probs=127.3
Q ss_pred eccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccc
Q 041021 36 IGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEEL 115 (320)
Q Consensus 36 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 115 (320)
..+++|+.|+++++. +..+... ....+++|++|++++| .+...++ +..+++|++|++++| .++.++.
T Consensus 31 ~~~~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~---- 97 (487)
T 3oja_A 31 QSAWNVKELDLSGNP-LSQISAA---DLAPFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNN-YVQELLV---- 97 (487)
T ss_dssp TTGGGCCEEECCSSC-CCCCCGG---GGTTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSS-EEEEEEE----
T ss_pred ccCCCccEEEeeCCc-CCCCCHH---HHhCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCC-cCCCCCC----
Confidence 356789999998764 4443221 2456889999999887 4555444 478899999999988 6777643
Q ss_pred ccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhH
Q 041021 116 SADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEEN 195 (320)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 195 (320)
.++|++|+++++ .+..++... +++|+.|+++++. ++.++...+ ..+.+++.
T Consensus 98 ----------~~~L~~L~L~~N-~l~~~~~~~-----l~~L~~L~L~~N~-l~~~~~~~~------------~~l~~L~~ 148 (487)
T 3oja_A 98 ----------GPSIETLHAANN-NISRVSCSR-----GQGKKNIYLANNK-ITMLRDLDE------------GCRSRVQY 148 (487)
T ss_dssp ----------CTTCCEEECCSS-CCCCEEECC-----CSSCEEEECCSSC-CCSGGGBCG------------GGGSSEEE
T ss_pred ----------CCCcCEEECcCC-cCCCCCccc-----cCCCCEEECCCCC-CCCCCchhh------------cCCCCCCE
Confidence 267777777776 454444322 6677777776653 333322111 11112221
Q ss_pred Hh--hccccc-chHHHhcCCCCCceeccccccCc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCcccc
Q 041021 196 LL--VANQIH-LFDEKLSGLHKVQHLWKENAESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGL 267 (320)
Q Consensus 196 L~--~~~~~~-~~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l 267 (320)
|. .+.... .|..+...+++|+.+.++++... ..+++|+.|+++++ .++.+++.+..+++|+.|+++++ .+
T Consensus 149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l 226 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KL 226 (487)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CC
T ss_pred EECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cC
Confidence 10 111111 12221235677777777665432 45777888888876 56667666667788888888874 46
Q ss_pred ccccCcchhhhccccCEEeEcccc
Q 041021 268 INLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 268 ~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
+.+|.. ...+++|+.|++++++
T Consensus 227 ~~lp~~--l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 227 VLIEKA--LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CEECTT--CCCCTTCCEEECTTCC
T ss_pred cccchh--hccCCCCCEEEcCCCC
Confidence 666542 3456778888887764
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.47 E-value=4.9e-13 Score=124.54 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=54.9
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +..+ ....+++|++|++.+|..++.. + +..+++|++|++++| .++.++
T Consensus 125 ~l~~L~~L~l~~N~-l~~l------~l~~l~~L~~L~l~~n~~~~~~-~---~~~l~~L~~L~ls~n-~l~~l~------ 186 (457)
T 3bz5_A 125 QNPLLTYLNCARNT-LTEI------DVSHNTQLTELDCHLNKKITKL-D---VTPQTQLTTLDCSFN-KITELD------ 186 (457)
T ss_dssp TCTTCCEEECTTSC-CSCC------CCTTCTTCCEEECTTCSCCCCC-C---CTTCTTCCEEECCSS-CCCCCC------
T ss_pred CCCcCCEEECCCCc-ccee------ccccCCcCCEEECCCCCccccc-c---cccCCcCCEEECCCC-ccceec------
Confidence 36777888777653 3332 2345677777777776555553 2 256677777777776 555542
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecC
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c 164 (320)
...+++|+.|+++++ ++..++ +..+++|++++++++
T Consensus 187 ------l~~l~~L~~L~l~~N-~l~~~~-----l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 187 ------VSQNKLLNRLNCDTN-NITKLD-----LNQNIQLTFLDCSSN 222 (457)
T ss_dssp ------CTTCTTCCEEECCSS-CCSCCC-----CTTCTTCSEEECCSS
T ss_pred ------cccCCCCCEEECcCC-cCCeec-----cccCCCCCEEECcCC
Confidence 112355666666555 333332 233555555555554
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.47 E-value=3e-13 Score=121.62 Aligned_cols=239 Identities=15% Similarity=0.153 Sum_probs=138.5
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|++|+++++. ++.+... ....+++|++|++.++ .+....+.. +..+++|++|++++| .++.++..
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~------ 118 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNS---DLQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYN-YLSNLSSS------ 118 (353)
T ss_dssp TTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSSCCHH------
T ss_pred ccCcEEECCCCc-CcccCHH---HhccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCC-cCCcCCHh------
Confidence 589999998765 5554332 2567899999999987 576655443 478999999999998 67766441
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh-
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL- 197 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~- 197 (320)
....+++|++|+++++ .+..++... .+..+++|++++++++..++.++...+ ..+.+++.|.
T Consensus 119 ---~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~------------~~l~~L~~L~l 181 (353)
T 2z80_A 119 ---WFKPLSSLTFLNLLGN-PYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDF------------AGLTFLEELEI 181 (353)
T ss_dssp ---HHTTCTTCSEEECTTC-CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTT------------TTCCEEEEEEE
T ss_pred ---HhCCCccCCEEECCCC-CCcccCchh-hhccCCCCcEEECCCCccccccCHHHc------------cCCCCCCEEEC
Confidence 0123589999999988 566665522 356789999999999876666543222 1112222211
Q ss_pred -hcccccc-hHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCC----ccCCCCccEEeecCc
Q 041021 198 -VANQIHL-FDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPT----SWHLENLATLEVSKC 264 (320)
Q Consensus 198 -~~~~~~~-~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~----~~~~~~L~~L~l~~c 264 (320)
.+....+ |.. +..+++|+.+.+.++... ..+++|+.|+++++ .++.++.. ....+.++.++++++
T Consensus 182 ~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 182 DASDLQSYEPKS-LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EETTCCEECTTT-TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESC
T ss_pred CCCCcCccCHHH-HhccccCCeecCCCCccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccc
Confidence 0111111 112 555556666655544322 23556666666665 33332211 123445555555554
Q ss_pred cccc-----cccCcchhhhccccCEEeEccccccceeecccccccccceeEecccceeecC
Q 041021 265 HGLI-----NLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLECLGLD 320 (320)
Q Consensus 265 ~~l~-----~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 320 (320)
. +. .++ .....+++|++|++++| ++..+... ....+++|+.|+|+
T Consensus 260 ~-l~~~~l~~l~--~~l~~l~~L~~L~Ls~N-~l~~i~~~-------~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 260 K-ITDESLFQVM--KLLNQISGLLELEFSRN-QLKSVPDG-------IFDRLTSLQKIWLH 309 (353)
T ss_dssp B-CCHHHHHHHH--HHHHTCTTCCEEECCSS-CCCCCCTT-------TTTTCTTCCEEECC
T ss_pred c-ccCcchhhhH--HHHhcccCCCEEECCCC-CCCccCHH-------HHhcCCCCCEEEee
Confidence 2 22 222 13456789999999988 34433221 01236788887763
No 44
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=1.5e-12 Score=125.44 Aligned_cols=57 Identities=19% Similarity=0.151 Sum_probs=29.5
Q ss_pred ccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 228 VFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 228 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
.+++|+.|+++++ .++.++. .+++|+.|++++| +++.+|. ....+++|+.|++++++
T Consensus 239 ~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 239 LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 4455555555554 4444443 3455666666554 3555543 13355566666665553
No 45
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=6.3e-13 Score=112.89 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=136.0
Q ss_pred CCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCC
Q 041021 67 NNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNF 146 (320)
Q Consensus 67 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 146 (320)
++|++|++.++ .+..+++.. +..+++|++|+++++..++.++.. . ...+++|++|++++|.++..++..
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~~--------~-f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHA-FSNLPNISRIYVSIDVTLQQLESH--------S-FYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTT-TTTCTTCCEEEEECCSSCCEECTT--------T-EESCTTCCEEEEEEETTCCEECTT
T ss_pred CcccEEEEeCC-cceEECHHH-ccCCCCCcEEeCCCCCCcceeCHh--------H-cCCCcCCcEEECCCCCCeeEcCHH
Confidence 58999999996 577755433 578999999999999658888651 1 124589999999987788888764
Q ss_pred CccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCc---eeccccc
Q 041021 147 TGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQ---HLWKENA 223 (320)
Q Consensus 147 ~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~---~l~~~~~ 223 (320)
. +..+++|++|+++++. ++.++. +..+++|+ .+.+.++
T Consensus 100 ~--f~~l~~L~~L~l~~n~-l~~lp~------------------------------------~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 100 A--LKELPLLKFLGIFNTG-LKMFPD------------------------------------LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp S--EECCTTCCEEEEEEEC-CCSCCC------------------------------------CTTCCBCCSEEEEEEESC
T ss_pred H--hCCCCCCCEEeCCCCC-Cccccc------------------------------------cccccccccccEEECCCC
Confidence 3 5679999999999874 554442 12233333 4444433
Q ss_pred -cCc-------cccCccc-eEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhc-cccCEEeEcccccc
Q 041021 224 -ESN-------KVFANLK-SLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESL-VNLERMKITDCKMM 293 (320)
Q Consensus 224 -~~~-------~~~~~L~-~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~l~~C~~l 293 (320)
... ..+++|+ .|+++++ .++.++......++|++|++++++.++.++... ...+ ++|++|+++++ ++
T Consensus 141 ~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l 217 (239)
T 2xwt_C 141 PYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SV 217 (239)
T ss_dssp TTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CC
T ss_pred cchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-cc
Confidence 111 5678899 9999886 667777654444899999999987788887643 4567 89999999985 34
Q ss_pred ceeecccccccccceeEecccceeecC
Q 041021 294 EEIIQSQVGEEAEDCIVFRKLECLGLD 320 (320)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~L~~L~l~ 320 (320)
+.+.. ..|++|+.|.+.
T Consensus 218 ~~l~~----------~~~~~L~~L~l~ 234 (239)
T 2xwt_C 218 TALPS----------KGLEHLKELIAR 234 (239)
T ss_dssp CCCCC----------TTCTTCSEEECT
T ss_pred ccCCh----------hHhccCceeecc
Confidence 33321 158888888763
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.47 E-value=2.4e-12 Score=114.55 Aligned_cols=237 Identities=15% Similarity=0.125 Sum_probs=146.1
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
+++.|+++++ +++.+. ...| ..+++|++|+++++. +..+.. .....+++|++|+++++ .+
T Consensus 53 ~l~~L~L~~n-~i~~~~---~~~~-----------~~l~~L~~L~L~~n~-l~~~~~---~~~~~l~~L~~L~Ls~n-~l 112 (330)
T 1xku_A 53 DTALLDLQNN-KITEIK---DGDF-----------KNLKNLHTLILINNK-ISKISP---GAFAPLVKLERLYLSKN-QL 112 (330)
T ss_dssp TCCEEECCSS-CCCCBC---TTTT-----------TTCTTCCEEECCSSC-CCCBCT---TTTTTCTTCCEEECCSS-CC
T ss_pred CCeEEECCCC-cCCEeC---hhhh-----------ccCCCCCEEECCCCc-CCeeCH---HHhcCCCCCCEEECCCC-cC
Confidence 3677888886 455441 1112 247889999998754 433212 12456788888888886 45
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEe
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLI 160 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~ 160 (320)
..+ +..+ .++|++|+++++ .++.++... ...+++|++|+++++. +.........+..+++|++++
T Consensus 113 ~~l-~~~~---~~~L~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 113 KEL-PEKM---PKTLQELRVHEN-EITKVRKSV---------FNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp SBC-CSSC---CTTCCEEECCSS-CCCBBCHHH---------HTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEE
T ss_pred Ccc-Chhh---cccccEEECCCC-cccccCHhH---------hcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEE
Confidence 553 3322 378888888887 566553311 1234788888888763 322111111345677888888
Q ss_pred eecCCCCCccccCccccccccccccccccccChhHH--hhcccccc-hHHHhcCCCCCceeccccccCc-------cccC
Q 041021 161 IENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL--LVANQIHL-FDEKLSGLHKVQHLWKENAESN-------KVFA 230 (320)
Q Consensus 161 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~~~~~~~~-~~~li~~~~~L~~l~~~~~~~~-------~~~~ 230 (320)
++++. ++.++.... .+++.| ..+....+ |.. +..+++|+.+.+.++... ..++
T Consensus 178 l~~n~-l~~l~~~~~---------------~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 178 IADTN-ITTIPQGLP---------------PSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp CCSSC-CCSCCSSCC---------------TTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred CCCCc-cccCCcccc---------------ccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 87763 444443211 111111 01111111 112 778888999888765432 5678
Q ss_pred ccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhh-----hccccCEEeEcccc
Q 041021 231 NLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSE-----SLVNLERMKITDCK 291 (320)
Q Consensus 231 ~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-----~l~~L~~L~l~~C~ 291 (320)
+|+.|+++++ .++.++..+..+++|++|+++++ .++.++...+.. ..++++.+++.+.+
T Consensus 241 ~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 241 HLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 9999999998 67788888888999999999996 577776544321 24778899998876
No 47
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=5.9e-15 Score=141.66 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=74.8
Q ss_pred eccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccc
Q 041021 36 IGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEEL 115 (320)
Q Consensus 36 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 115 (320)
..+++|++|+++++. +....... ....+++|++|++.+|..++......++..+++|++|++++|. +++.....
T Consensus 102 ~~~~~L~~L~L~~~~-~~~~~~~~--l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~-- 175 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTDDCLEL--IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHW-- 175 (594)
T ss_dssp HHCTTCCEEEEESCB-CCHHHHHH--HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGG--
T ss_pred HhCCCCCeEEeeCcE-EcHHHHHH--HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHH--
Confidence 467899999998875 33311111 1125789999999998766654344455689999999999984 54432100
Q ss_pred ccccCCCCCcCCccCeEeecCCc-ccccccCCCccccCCCCccEEeeecCCC
Q 041021 116 SADKEHIGPLFPKLSELRLIDLP-KLKRFCNFTGNIIELPKLEYLIIENCPD 166 (320)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~~l~~L~~l~l~~c~~ 166 (320)
.......+++|++|++++|. .+..-.... ....+++|++|++++|..
T Consensus 176 ---l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 176 ---LSHFPDTYTSLVSLNISCLASEVSFSALER-LVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp ---GGGSCTTCCCCCEEECTTCCSCCCHHHHHH-HHHHCTTCCEEECCTTSC
T ss_pred ---HHHHhhcCCcCcEEEecccCCcCCHHHHHH-HHHhCCCCcEEecCCCCc
Confidence 01222345799999999885 121100000 123478999999988743
No 48
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=6.3e-14 Score=124.98 Aligned_cols=111 Identities=10% Similarity=0.096 Sum_probs=59.6
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++++.|++.+.. +...+. ....+++|++|++++|. +........+..+++|++|++++| .+++...
T Consensus 70 ~~l~~L~l~~n~-l~~~~~----~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~------- 135 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLA----EHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIV------- 135 (336)
T ss_dssp TTCSEEECTTCE-ECSCCC----SCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHH-------
T ss_pred ccceEEEcCCcc-ccccch----hhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHH-------
Confidence 566666666543 222111 13346777777777763 433212223466777777777777 3432211
Q ss_pred cCCCCCcCCccCeEeecCCccccc--ccCCCccccCCCCccEEeeecCCCCC
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKR--FCNFTGNIIELPKLEYLIIENCPDME 168 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~l~~L~~l~l~~c~~l~ 168 (320)
.... .+++|++|++++|..+.. ++. .+..+++|++|++++|+.++
T Consensus 136 -~~l~-~~~~L~~L~L~~~~~l~~~~l~~---~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 136 -NTLA-KNSNLVRLNLSGCSGFSEFALQT---LLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp -HHHT-TCTTCSEEECTTCBSCCHHHHHH---HHHHCTTCCEEECCCCTTCC
T ss_pred -HHHh-cCCCCCEEECCCCCCCCHHHHHH---HHhcCCCCCEEcCCCCCCcC
Confidence 0111 246777777777765553 221 23456777777777775444
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=1.7e-12 Score=112.66 Aligned_cols=195 Identities=18% Similarity=0.233 Sum_probs=129.2
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|++|+++++. ++.+... ....+++|++|+++++ .+....+.. +..+++|++|+++++ .++.++.
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~------- 93 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSY---SFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN-PIQSLAL------- 93 (276)
T ss_dssp TTCCEEECTTCC-CCEECTT---TTTTCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC-CCCEECT-------
T ss_pred CCccEEECCCCc-ccccCHh---HhccccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCC-ccCccCh-------
Confidence 369999998764 4443221 3456889999999987 566644433 478899999999988 6777643
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhh
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLV 198 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 198 (320)
.....+++|++|+++++ ++..+.... +..+++|++|+++++. ++.+.....
T Consensus 94 --~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~l~~~----------------------- 144 (276)
T 2z62_A 94 --GAFSGLSSLQKLVAVET-NLASLENFP--IGHLKTLKELNVAHNL-IQSFKLPEY----------------------- 144 (276)
T ss_dssp --TTTTTCTTCCEEECTTS-CCCCSTTCC--CTTCTTCCEEECCSSC-CCCCCCCGG-----------------------
T ss_pred --hhhcCCccccEEECCCC-CccccCchh--cccCCCCCEEECcCCc-cceecCchh-----------------------
Confidence 11223589999999887 455444422 5668899999998864 433221101
Q ss_pred cccccchHHHhcCCCCCceeccccccCc-------cccCccc----eEEEccCCCcccccCCccCCCCccEEeecCcccc
Q 041021 199 ANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLK----SLEIFECSKLQKLVPTSWHLENLATLEVSKCHGL 267 (320)
Q Consensus 199 ~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~----~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l 267 (320)
+..+++|+.+.+.++... ..+++|+ .|+++++ .++.++.......+|++|+++++. +
T Consensus 145 ----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l 212 (276)
T 2z62_A 145 ----------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-L 212 (276)
T ss_dssp ----------GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-C
T ss_pred ----------hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-e
Confidence 556777777777654332 2334444 7788775 566666655555689999999864 7
Q ss_pred ccccCcchhhhccccCEEeEcc
Q 041021 268 INLLTLSTSESLVNLERMKITD 289 (320)
Q Consensus 268 ~~l~~~~~~~~l~~L~~L~l~~ 289 (320)
+.++.. +...+++|++|++++
T Consensus 213 ~~~~~~-~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 213 KSVPDG-IFDRLTSLQKIWLHT 233 (276)
T ss_dssp SCCCTT-TTTTCCSCCEEECCS
T ss_pred eecCHh-HhcccccccEEEccC
Confidence 777653 345788999999883
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.46 E-value=2e-12 Score=126.24 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=47.2
Q ss_pred hcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCc-cCCCCccEEeecCccccccccCcchhhhcc
Q 041021 209 LSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTS-WHLENLATLEVSKCHGLINLLTLSTSESLV 280 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 280 (320)
+.++++|+.+.+.++... ..+++|+.|+++++ +++.+++.. ..+++|+.|+++++ +++.++...+...++
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~ 609 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFR 609 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHT
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhccccc
Confidence 455666666666543221 45566777777654 555665543 45677777777774 566655432222566
Q ss_pred ccCEEeEcccc
Q 041021 281 NLERMKITDCK 291 (320)
Q Consensus 281 ~L~~L~l~~C~ 291 (320)
+|+++++++++
T Consensus 610 ~L~~l~l~~N~ 620 (680)
T 1ziw_A 610 NLTELDMRFNP 620 (680)
T ss_dssp TCSEEECTTCC
T ss_pred ccCEEEccCCC
Confidence 77777776643
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.46 E-value=1.6e-12 Score=113.33 Aligned_cols=180 Identities=22% Similarity=0.240 Sum_probs=129.5
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +..+.. .....+++|++|+++++..+....+.. +..+++|++|++++| .++.++.
T Consensus 54 ~~~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~----- 122 (285)
T 1ozn_A 54 ACRNLTILWLHSNV-LARIDA---AAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRC-GLQELGP----- 122 (285)
T ss_dssp TCTTCCEEECCSSC-CCEECT---TTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCT-----
T ss_pred cCCCCCEEECCCCc-cceeCH---hhcCCccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCC-cCCEECH-----
Confidence 57999999998764 444322 235678999999999986677754544 578999999999999 6666533
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
.....+++|++|+++++ .+..++... +..+++|++|+++++ +++.++...
T Consensus 123 ----~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~---------------------- 172 (285)
T 1ozn_A 123 ----GLFRGLAALQYLYLQDN-ALQALPDDT--FRDLGNLTHLFLHGN-RISSVPERA---------------------- 172 (285)
T ss_dssp ----TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCEECTTT----------------------
T ss_pred ----hHhhCCcCCCEEECCCC-cccccCHhH--hccCCCccEEECCCC-cccccCHHH----------------------
Confidence 11234589999999998 566665432 567899999999987 455544320
Q ss_pred hhcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccC-CccCCCCccEEeecCccccc
Q 041021 197 LVANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVP-TSWHLENLATLEVSKCHGLI 268 (320)
Q Consensus 197 ~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~ 268 (320)
+..+++|+.+.+.++... ..+++|+.|+++++ .++.+++ .+..+++|++|++++++-..
T Consensus 173 ------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 173 ------------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ------------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccC
Confidence 556777887777664332 56789999999997 5666654 35788999999999976544
Q ss_pred cc
Q 041021 269 NL 270 (320)
Q Consensus 269 ~l 270 (320)
+.
T Consensus 240 ~~ 241 (285)
T 1ozn_A 240 DC 241 (285)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.45 E-value=2.4e-12 Score=114.71 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=147.1
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
+|+.|+++++. ++.+.. ..| ..+++|++|+++++. +..+... ....+++|++|+++++ .+
T Consensus 55 ~l~~L~l~~n~-i~~~~~---~~~-----------~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l 114 (332)
T 2ft3_A 55 DTTLLDLQNND-ISELRK---DDF-----------KGLQHLYALVLVNNK-ISKIHEK---AFSPLRKLQKLYISKN-HL 114 (332)
T ss_dssp TCCEEECCSSC-CCEECT---TTT-----------TTCTTCCEEECCSSC-CCEECGG---GSTTCTTCCEEECCSS-CC
T ss_pred CCeEEECCCCc-CCccCH---hHh-----------hCCCCCcEEECCCCc-cCccCHh---HhhCcCCCCEEECCCC-cC
Confidence 47788888863 555411 112 347899999998764 4443221 2456789999999886 45
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEe
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLI 160 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~ 160 (320)
..+ +... .++|++|+++++ .++.++.. ....+++|++|+++++ .+............+ +|++++
T Consensus 115 ~~l-~~~~---~~~L~~L~l~~n-~i~~~~~~---------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 115 VEI-PPNL---PSSLVELRIHDN-RIRKVPKG---------VFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CSC-CSSC---CTTCCEEECCSS-CCCCCCSG---------GGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCB
T ss_pred Ccc-Cccc---cccCCEEECCCC-ccCccCHh---------HhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEE
Confidence 553 3322 278999999888 66665431 1223588888888887 333211111023334 788888
Q ss_pred eecCCCCCccccCccccccccccccccccccChhHHh--hcccccch-HHHhcCCCCCceeccccccCc-------cccC
Q 041021 161 IENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL--VANQIHLF-DEKLSGLHKVQHLWKENAESN-------KVFA 230 (320)
Q Consensus 161 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~--~~~~~~~~-~~li~~~~~L~~l~~~~~~~~-------~~~~ 230 (320)
++++. ++.++.... .+++.|. .+....++ .. +..+++|+.+.+.++... ..++
T Consensus 179 l~~n~-l~~l~~~~~---------------~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 179 ISEAK-LTGIPKDLP---------------ETLNELHLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp CCSSB-CSSCCSSSC---------------SSCSCCBCCSSCCCCCCTTS-STTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred CcCCC-CCccCcccc---------------CCCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 87763 444443211 1111110 11111111 11 667888888887765432 5778
Q ss_pred ccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhh-----ccccCEEeEcccc
Q 041021 231 NLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSES-----LVNLERMKITDCK 291 (320)
Q Consensus 231 ~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-----l~~L~~L~l~~C~ 291 (320)
+|+.|+++++ .++.++..+..+++|++|+++++ .++.++...+... .++|+.|++.+++
T Consensus 242 ~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 242 TLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 9999999987 67788888888999999999995 5888765443322 4678999999986
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.45 E-value=4.5e-13 Score=129.91 Aligned_cols=218 Identities=12% Similarity=0.071 Sum_probs=142.9
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccc-cCchhHHhhc------ccCCeEEEccCccccee
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSS-AIPANLLWCL------NNLAWLEVRNCDSLEEV 109 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~l------~~L~~L~i~~c~~l~~i 109 (320)
.+++|++|+++++.-...++ .....+++|++|++.++..+.. ..|..+ ..+ ++|++|++++| .++.+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n-~l~~i 320 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLP----TFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYN-NLKTF 320 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCC----TTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSS-CCSSC
T ss_pred ccCCCCEEEecCCcCCccCh----HHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCC-cCCcc
Confidence 58999999999887554432 2356789999999999864665 455544 444 99999999999 67666
Q ss_pred ccccccccccCCCCCcCCccCeEeecCCcccc-cccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccc
Q 041021 110 LHLEELSADKEHIGPLFPKLSELRLIDLPKLK-RFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQ 188 (320)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 188 (320)
|... ....+++|++|+++++ .+. .++ . +..+++|++|+++++. +..+|.. + .
T Consensus 321 p~~~--------~l~~l~~L~~L~L~~N-~l~g~ip--~--~~~l~~L~~L~L~~N~-l~~lp~~-l------------~ 373 (636)
T 4eco_A 321 PVET--------SLQKMKKLGMLECLYN-QLEGKLP--A--FGSEIKLASLNLAYNQ-ITEIPAN-F------------C 373 (636)
T ss_dssp CCHH--------HHTTCTTCCEEECCSC-CCEEECC--C--CEEEEEESEEECCSSE-EEECCTT-S------------E
T ss_pred Cchh--------hhccCCCCCEEeCcCC-cCccchh--h--hCCCCCCCEEECCCCc-cccccHh-h------------h
Confidence 4300 1224589999999998 444 665 2 4568899999998874 4444432 1 2
Q ss_pred cccC-hhHHh--hcccccchHHHhcC--CCCCceeccccccCc-------c-------ccCccceEEEccCCCcccccCC
Q 041021 189 KLKS-EENLL--VANQIHLFDEKLSG--LHKVQHLWKENAESN-------K-------VFANLKSLEIFECSKLQKLVPT 249 (320)
Q Consensus 189 ~l~~-l~~L~--~~~~~~~~~~li~~--~~~L~~l~~~~~~~~-------~-------~~~~L~~L~i~~c~~l~~l~~~ 249 (320)
.+.+ ++.|. .+....+|.. +.. +++|+.+.+.++... . .+++|+.|+++++ .++.++..
T Consensus 374 ~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~ 451 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKE 451 (636)
T ss_dssp EECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTH
T ss_pred hhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHH
Confidence 2222 33321 1222244443 333 347888877665432 1 4568999999987 56677654
Q ss_pred c-cCCCCccEEeecCccccccccCcchh------hhccccCEEeEccc
Q 041021 250 S-WHLENLATLEVSKCHGLINLLTLSTS------ESLVNLERMKITDC 290 (320)
Q Consensus 250 ~-~~~~~L~~L~l~~c~~l~~l~~~~~~------~~l~~L~~L~l~~C 290 (320)
. ..+++|++|+++++ +++.++...+. ..+++|++|++++|
T Consensus 452 ~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 452 LFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp HHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred HHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC
Confidence 3 45899999999986 46677664322 12338999999887
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.45 E-value=3.8e-12 Score=127.32 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=51.6
Q ss_pred hcCCCCCceeccccccCc-------cccCccceEEEccCCCcccc-cCCccCCCCccEEeecCccccccccCcchhhhcc
Q 041021 209 LSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHGLINLLTLSTSESLV 280 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 280 (320)
+..+++|+.+.+.++... ..+++|+.|+++++ .++.+ +.....+++|+.|+++++ .++.++... ...++
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~ 362 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQT-FKFLE 362 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSC-SCSCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhh-hcCCC
Confidence 566777777776654332 45677888888876 34444 345567778888888875 466665532 34667
Q ss_pred ccCEEeEccc
Q 041021 281 NLERMKITDC 290 (320)
Q Consensus 281 ~L~~L~l~~C 290 (320)
+|++|+++++
T Consensus 363 ~L~~L~Ls~N 372 (844)
T 3j0a_A 363 KLQTLDLRDN 372 (844)
T ss_dssp CCCEEEEETC
T ss_pred CCCEEECCCC
Confidence 7888887775
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.44 E-value=2.9e-12 Score=119.58 Aligned_cols=205 Identities=18% Similarity=0.242 Sum_probs=122.0
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|+.|+++++. +..+ .....+++|++|++.+| .+....+ +..+++|++|++++| .++.++.
T Consensus 175 ~l~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~----- 238 (466)
T 1o6v_A 175 NLTTLERLDISSNK-VSDI-----SVLAKLTNLESLIATNN-QISDITP---LGILTNLDELSLNGN-QLKDIGT----- 238 (466)
T ss_dssp TCTTCCEEECCSSC-CCCC-----GGGGGCTTCSEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCGG-----
T ss_pred cCCCCCEEECcCCc-CCCC-----hhhccCCCCCEEEecCC-ccccccc---ccccCCCCEEECCCC-Ccccchh-----
Confidence 46788888887664 3332 12345677888888776 3444333 356777888888777 4555422
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
...+++|++|+++++ .+..+++ +..+++|++|+++++. +..++. + ..+.+++.|
T Consensus 239 ------l~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~--~------------~~l~~L~~L 292 (466)
T 1o6v_A 239 ------LASLTNLTDLDLANN-QISNLAP----LSGLTKLTELKLGANQ-ISNISP--L------------AGLTALTNL 292 (466)
T ss_dssp ------GGGCTTCSEEECCSS-CCCCCGG----GTTCTTCSEEECCSSC-CCCCGG--G------------TTCTTCSEE
T ss_pred ------hhcCCCCCEEECCCC-ccccchh----hhcCCCCCEEECCCCc-cCcccc--c------------cCCCccCeE
Confidence 113467777777766 3333332 3446777777776653 332221 0 111111111
Q ss_pred h--hcccccchHHHhcCCCCCceeccccccCc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCcccccc
Q 041021 197 L--VANQIHLFDEKLSGLHKVQHLWKENAESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLIN 269 (320)
Q Consensus 197 ~--~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 269 (320)
. .+....++. +..+++|+.+.+.++... ..+++|+.|++++| .++.+ +....+++|+.|++++|+ +++
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~l~~n~-l~~ 367 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDV-SSLANLTNINWLSAGHNQ-ISD 367 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCC-GGGTTCTTCCEEECCSSC-CCB
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCc-hhhccCCCCCEEeCCCCc-cCc
Confidence 0 011111111 566778888877765432 57788999999887 56665 345678999999999874 555
Q ss_pred ccCcchhhhccccCEEeEcccc
Q 041021 270 LLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 270 l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
++. ...+++|++|++++|+
T Consensus 368 ~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 368 LTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CGG---GTTCTTCCEEECCCEE
T ss_pred cch---hhcCCCCCEEeccCCc
Confidence 543 4578899999998873
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=1.4e-12 Score=122.57 Aligned_cols=203 Identities=18% Similarity=0.118 Sum_probs=138.4
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
..+++|++|+++++ .+...++.. +..+++|++|++++| .++.+++ ...+++|++|+++++ .+..+
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~-----------l~~l~~L~~L~Ls~N-~l~~l 95 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETLD-----------LESLSTLRTLDLNNN-YVQEL 95 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCGGG-GTTCTTCCEEECTTS-CCEEEEE-----------CTTCTTCCEEECCSS-EEEEE
T ss_pred ccCCCccEEEeeCC-cCCCCCHHH-HhCCCCCCEEEeeCC-CCCCCcc-----------cccCCCCCEEEecCC-cCCCC
Confidence 35679999999997 677755544 589999999999999 6776543 224689999999998 66655
Q ss_pred cCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh--hcccccch-HHHhcCCCCCceecc
Q 041021 144 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL--VANQIHLF-DEKLSGLHKVQHLWK 220 (320)
Q Consensus 144 ~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~--~~~~~~~~-~~li~~~~~L~~l~~ 220 (320)
+. .++|++|+++++. +..++...+ .+++.|. .+....++ .. +..+++|+.+.+
T Consensus 96 ~~-------~~~L~~L~L~~N~-l~~~~~~~l---------------~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L 151 (487)
T 3oja_A 96 LV-------GPSIETLHAANNN-ISRVSCSRG---------------QGKKNIYLANNKITMLRDLD-EGCRSRVQYLDL 151 (487)
T ss_dssp EE-------CTTCCEEECCSSC-CCCEEECCC---------------SSCEEEECCSSCCCSGGGBC-GGGGSSEEEEEC
T ss_pred CC-------CCCcCEEECcCCc-CCCCCcccc---------------CCCCEEECCCCCCCCCCchh-hcCCCCCCEEEC
Confidence 43 5899999999874 454443211 1222221 11111121 12 677888999888
Q ss_pred ccccCc--------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccccc
Q 041021 221 ENAESN--------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKM 292 (320)
Q Consensus 221 ~~~~~~--------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~ 292 (320)
+++... ..+++|+.|+++++ .++.++.. ..+++|++|+++++ .++.++.. ...+++|+.|+++++.
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~- 225 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK- 225 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc-ccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCc-
Confidence 765432 25789999999997 46666443 46899999999995 57777663 4578999999999973
Q ss_pred cceeecccccccccceeEecccceeec
Q 041021 293 MEEIIQSQVGEEAEDCIVFRKLECLGL 319 (320)
Q Consensus 293 l~~~~~~~~~~~~~~~~~~~~L~~L~l 319 (320)
+..+... ...+++|+.|++
T Consensus 226 l~~lp~~--------l~~l~~L~~L~l 244 (487)
T 3oja_A 226 LVLIEKA--------LRFSQNLEHFDL 244 (487)
T ss_dssp CCEECTT--------CCCCTTCCEEEC
T ss_pred Ccccchh--------hccCCCCCEEEc
Confidence 4333221 223567777765
No 57
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=3.3e-14 Score=126.82 Aligned_cols=209 Identities=15% Similarity=0.123 Sum_probs=135.6
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +...... .....+++|++|++.+| .+....+.. +..+++|++|++++|..+++...
T Consensus 91 ~~~~L~~L~L~~~~-l~~~~~~--~~~~~~~~L~~L~L~~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l----- 160 (336)
T 2ast_B 91 SPFRVQHMDLSNSV-IEVSTLH--GILSQCSKLQNLSLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFAL----- 160 (336)
T ss_dssp CCBCCCEEECTTCE-ECHHHHH--HHHTTBCCCSEEECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHH-----
T ss_pred cCCCCCEEEccCCC-cCHHHHH--HHHhhCCCCCEEeCcCc-ccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHH-----
Confidence 57999999999886 4331110 12356899999999998 465544444 46799999999999976664210
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCC-CccEEeeecCC-CCCccccCccccccccccccccccccChh
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELP-KLEYLIIENCP-DMETFTSNSTFVLYMTTDNKEAQKLKSEE 194 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~-~L~~l~l~~c~-~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 194 (320)
......+++|++|++++|..+....... .+..++ +|++|++++|. .++....
T Consensus 161 ---~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l---------------------- 214 (336)
T 2ast_B 161 ---QTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDL---------------------- 214 (336)
T ss_dssp ---HHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHH----------------------
T ss_pred ---HHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHH----------------------
Confidence 0111245899999999997776421111 345688 99999999985 3321100
Q ss_pred HHhhcccccchHHHhcCCCCCceeccccccC-c-------cccCccceEEEccCCCccccc-CCccCCCCccEEeecCcc
Q 041021 195 NLLVANQIHLFDEKLSGLHKVQHLWKENAES-N-------KVFANLKSLEIFECSKLQKLV-PTSWHLENLATLEVSKCH 265 (320)
Q Consensus 195 ~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~-~-------~~~~~L~~L~i~~c~~l~~l~-~~~~~~~~L~~L~l~~c~ 265 (320)
|.. +..+++|+.+.+.++.. . ..+++|+.|++++|..+.... ..+..+++|++|++++|
T Consensus 215 ----------~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 215 ----------STL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp ----------HHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred ----------HHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 000 56688888888776552 1 567899999999997554321 13467899999999998
Q ss_pred ccccccCcchhhhccccCEEeEccccccceeec
Q 041021 266 GLINLLTLSTSESLVNLERMKITDCKMMEEIIQ 298 (320)
Q Consensus 266 ~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~ 298 (320)
+++- .+.....+++.|+++ |.++..+..
T Consensus 283 -i~~~---~~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 283 -VPDG---TLQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp -SCTT---CHHHHHHHSTTSEES-CCCSCCTTC
T ss_pred -cCHH---HHHHHHhhCcceEEe-cccCccccC
Confidence 4432 222121346666674 555655543
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.43 E-value=2.3e-12 Score=113.81 Aligned_cols=185 Identities=21% Similarity=0.260 Sum_probs=126.9
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|++.++. +..+. ....+++|++|++++| .+....+ +..+++|++|++++| .++.++.
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~-----~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~----- 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE-----GVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNVSA----- 102 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT-----TGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCCGG-----
T ss_pred HcCCcCEEEeeCCC-ccCch-----hhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCchh-----
Confidence 57889999998764 44421 2456889999999887 5666443 578899999999988 5766532
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
...+++|++|+++++ ++..++. +..+++|++|+++++. ++.++.
T Consensus 103 ------~~~l~~L~~L~l~~n-~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~~------------------------ 146 (308)
T 1h6u_A 103 ------IAGLQSIKTLDLTST-QITDVTP----LAGLSNLQVLYLDLNQ-ITNISP------------------------ 146 (308)
T ss_dssp ------GTTCTTCCEEECTTS-CCCCCGG----GTTCTTCCEEECCSSC-CCCCGG------------------------
T ss_pred ------hcCCCCCCEEECCCC-CCCCchh----hcCCCCCCEEECCCCc-cCcCcc------------------------
Confidence 123588999999988 4555543 4568899999998873 443321
Q ss_pred hhcccccchHHHhcCCCCCceeccccccCc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCcccccccc
Q 041021 197 LVANQIHLFDEKLSGLHKVQHLWKENAESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLL 271 (320)
Q Consensus 197 ~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 271 (320)
+..+++|+.+.+.++... ..+++|+.|+++++ .++.+++ ...+++|++|++++| .++.++
T Consensus 147 ------------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~ 211 (308)
T 1h6u_A 147 ------------LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVS 211 (308)
T ss_dssp ------------GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCG
T ss_pred ------------ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccCccc
Confidence 334556666666554322 56678888888876 5566554 567888888888885 466665
Q ss_pred CcchhhhccccCEEeEcccc
Q 041021 272 TLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 272 ~~~~~~~l~~L~~L~l~~C~ 291 (320)
. ...+++|++|++++++
T Consensus 212 ~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 212 P---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp G---GTTCTTCCEEEEEEEE
T ss_pred c---ccCCCCCCEEEccCCe
Confidence 3 3567888888888764
No 59
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=1.8e-12 Score=116.54 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=76.3
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
+++++|++++. +++.++.+. +..+++|++|+++++...+. ++...+..++++.++.+.++..++.+++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~---f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l~~l~~------- 97 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGA---FSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNLLYINP------- 97 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTS---STTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETTCCEECT-------
T ss_pred CCCCEEEccCC-cCCCcCHHH---HcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCcccccCc-------
Confidence 47888888864 466654432 56678888888888754444 3333446778888777777668888754
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccC
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSN 173 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~ 173 (320)
... ..+++|++|+++++ ++..++... .....++..+++.++..+..++..
T Consensus 98 -~~f-~~l~~L~~L~l~~n-~l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 98 -EAF-QNLPNLQYLLISNT-GIKHLPDVH--KIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp -TSB-CCCTTCCEEEEEEE-CCSSCCCCT--TCCBSSCEEEEEESCTTCCEECTT
T ss_pred -hhh-hhcccccccccccc-ccccCCchh--hcccchhhhhhhcccccccccccc
Confidence 111 23478888888877 555554432 233456677777777777766654
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.41 E-value=6.5e-12 Score=122.56 Aligned_cols=222 Identities=16% Similarity=0.174 Sum_probs=126.1
Q ss_pred CCceEeecCCCC-ceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcC
Q 041021 1 SLVNLKVSGCPK-LEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTN 79 (320)
Q Consensus 1 ~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 79 (320)
+|++|++++|.. +..+. ...|.. ...++|+.|+++++. +..+.. .....+++|+.|++.++.
T Consensus 354 ~L~~L~Ls~n~~~~~~l~---~~~f~~---------~~~~~L~~L~L~~n~-l~~~~~---~~~~~l~~L~~L~L~~N~- 416 (680)
T 1ziw_A 354 NLKYLSLSNSFTSLRTLT---NETFVS---------LAHSPLHILNLTKNK-ISKIES---DAFSWLGHLEVLDLGLNE- 416 (680)
T ss_dssp TCCEEECTTCBSCCCEEC---TTTTGG---------GTTSCCCEEECTTSC-CCEECT---TTTTTCTTCCEEECCSSC-
T ss_pred CCcEEECCCCchhhhhcc---hhhhcc---------cccCcCceEECCCCC-CCeECh---hhhhCCCCCCEEeCCCCc-
Confidence 478888888752 33331 111110 123578888888765 333222 124567888888888864
Q ss_pred ccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcc--cccccCCCccccCCCCcc
Q 041021 80 MSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPK--LKRFCNFTGNIIELPKLE 157 (320)
Q Consensus 80 l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~--l~~~~~~~~~~~~l~~L~ 157 (320)
+....+...+..+++|++|++++| .+..++. .. ...+++|+.|+++++.- +..++. .+..+++|+
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--------~~-~~~~~~L~~L~l~~n~l~~~~~~p~---~~~~l~~L~ 483 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYN-KYLQLTR--------NS-FALVPSLQRLMLRRVALKNVDSSPS---PFQPLRNLT 483 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSC-SEEECCT--------TT-TTTCTTCCEEECTTSCCBCTTCSSC---TTTTCTTCC
T ss_pred CccccCcccccCcccccEEecCCC-CcceeCh--------hh-hhcCcccccchhccccccccccCCc---ccccCCCCC
Confidence 433233334577888888888888 4555433 11 12347778888777632 122222 245577777
Q ss_pred EEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCc-----------
Q 041021 158 YLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN----------- 226 (320)
Q Consensus 158 ~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~----------- 226 (320)
.++++++. ++.++... +.++++|+.+.+.++...
T Consensus 484 ~L~Ls~N~-l~~i~~~~----------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 484 ILDLSNNN-IANINDDM----------------------------------LEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp EEECCSSC-CCCCCTTT----------------------------------TTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred EEECCCCC-CCcCChhh----------------------------------hccccccCEEeCCCCCccccchhhccCCc
Confidence 77777753 44443221 334455555554432211
Q ss_pred ----cccCccceEEEccCCCcccccCC-ccCCCCccEEeecCccccccccCcchhhhccccCEEeEccc
Q 041021 227 ----KVFANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 227 ----~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
..+++|+.|+++++ .++.++.. ...+++|+.|++++ ++++.++.. ....+++|++|+++++
T Consensus 529 ~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGL-NNLNTLPAS-VFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECTTS
T ss_pred chhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCC-CCCCcCCHh-HhCCCCCCCEEECCCC
Confidence 34567777777765 55566543 45677777777766 456666553 3346677777777766
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.41 E-value=1.9e-12 Score=123.45 Aligned_cols=236 Identities=18% Similarity=0.170 Sum_probs=134.8
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|++.++. +..++. ....+ +|++|++.+|. +.. .+. ..+++|++|++.++. +.....
T Consensus 280 ~l~~L~~L~l~~~~-l~~l~~----~~~~~-~L~~L~l~~n~-~~~-l~~---~~l~~L~~L~l~~n~-~~~~~~----- 342 (570)
T 2z63_A 280 CLTNVSSFSLVSVT-IERVKD----FSYNF-GWQHLELVNCK-FGQ-FPT---LKLKSLKRLTFTSNK-GGNAFS----- 342 (570)
T ss_dssp GGTTCSEEEEESCE-ECSCCB----CCSCC-CCSEEEEESCB-CSS-CCB---CBCSSCCEEEEESCB-SCCBCC-----
T ss_pred CcCcccEEEecCcc-chhhhh----hhccC-CccEEeeccCc-ccc-cCc---ccccccCEEeCcCCc-cccccc-----
Confidence 46788888887664 333222 12334 77888887763 444 232 356777777777774 222211
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
...+++|++|+++++ .+.........+..+++|++++++++. +..++.. + ..+.+++.|
T Consensus 343 ------~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~------------~~l~~L~~L 401 (570)
T 2z63_A 343 ------EVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN-F------------LGLEQLEHL 401 (570)
T ss_dssp ------CCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE-E------------ETCTTCCEE
T ss_pred ------cccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc-ccccccc-c------------cccCCCCEE
Confidence 124577777777766 333221000023456777777776653 2222211 0 111112211
Q ss_pred h--hcccccchH-HHhcCCCCCceeccccccCc-------cccCccceEEEccCCCc-ccccCCccCCCCccEEeecCcc
Q 041021 197 L--VANQIHLFD-EKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKL-QKLVPTSWHLENLATLEVSKCH 265 (320)
Q Consensus 197 ~--~~~~~~~~~-~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l-~~l~~~~~~~~~L~~L~l~~c~ 265 (320)
. .+.....+. ..+..+++|+.+.+.++... ..+++|+.|++.+|.-. ..++..+..+++|++|++++|.
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 0 011111110 01667888998888765432 56889999999998544 3577777889999999999974
Q ss_pred ccccccCcchhhhccccCEEeEccccccceeecccccccccceeEecccceeecC
Q 041021 266 GLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLECLGLD 320 (320)
Q Consensus 266 ~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 320 (320)
++.++.. ....+++|++|++++| ++..+... ....+++|+.|+++
T Consensus 482 -l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 482 -LEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDG-------IFDRLTSLQKIWLH 526 (570)
T ss_dssp -CCEECTT-TTTTCTTCCEEECCSS-CCSCCCTT-------TTTTCTTCCEEECC
T ss_pred -cccCChh-hhhcccCCCEEeCCCC-cCCCCCHH-------HhhcccCCcEEEec
Confidence 6666443 3457899999999998 44443221 11236777777663
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.41 E-value=2.4e-14 Score=137.36 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=59.6
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCch---hHHhhcccCCeEEEccCcccceecccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPA---NLLWCLNNLAWLEVRNCDSLEEVLHLE 113 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~i~~c~~l~~i~~~~ 113 (320)
.+++|++|++.+|..+....... ....+++|++|++.+|. +.+..+. .+...+++|++|++++|. ..+....
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~ 202 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAA--IAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSA 202 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHH--HHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHH--HHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHH
Confidence 46788888888776555421110 12356788888887774 4332211 122356678888887774 1111000
Q ss_pred ccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEee
Q 041021 114 ELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLII 161 (320)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l 161 (320)
.......+++|++|++++|..+..++. .+..+++|+++.+
T Consensus 203 -----l~~l~~~~~~L~~L~L~~~~~~~~l~~---~~~~~~~L~~L~l 242 (594)
T 2p1m_B 203 -----LERLVTRCPNLKSLKLNRAVPLEKLAT---LLQRAPQLEELGT 242 (594)
T ss_dssp -----HHHHHHHCTTCCEEECCTTSCHHHHHH---HHHHCTTCSEEEC
T ss_pred -----HHHHHHhCCCCcEEecCCCCcHHHHHH---HHhcCCcceEccc
Confidence 001111247777777777755555433 2344666666654
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=9.9e-12 Score=107.50 Aligned_cols=106 Identities=26% Similarity=0.255 Sum_probs=50.2
Q ss_pred cccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccccc
Q 041021 40 DIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADK 119 (320)
Q Consensus 40 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 119 (320)
+|++|+++++. +..+.. .....+++|++|++.++ .+..+ +...+..+++|++|+++++ .++.++.
T Consensus 38 ~l~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n-~l~~~~~-------- 102 (270)
T 2o6q_A 38 DTKKLDLQSNK-LSSLPS---KAFHRLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDN-KLQALPI-------- 102 (270)
T ss_dssp TCSEEECCSSC-CSCCCT---TSSSSCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSS-CCCCCCT--------
T ss_pred CCCEEECcCCC-CCeeCH---HHhcCCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCC-cCCcCCH--------
Confidence 46666665443 333211 12344566666666554 34442 2222345566666666665 4444432
Q ss_pred CCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecC
Q 041021 120 EHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 120 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c 164 (320)
.....+++|++|+++++ .+..++... +..+++|++|+++++
T Consensus 103 -~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 103 -GVFDQLVNLAELRLDRN-QLKSLPPRV--FDSLTKLTYLSLGYN 143 (270)
T ss_dssp -TTTTTCSSCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS
T ss_pred -hHcccccCCCEEECCCC-ccCeeCHHH--hCcCcCCCEEECCCC
Confidence 11112356666666654 344443321 344566666666554
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=2.7e-12 Score=127.82 Aligned_cols=218 Identities=13% Similarity=0.043 Sum_probs=143.8
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccc-cCchhHHhhcc-------cCCeEEEccCcccce
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSS-AIPANLLWCLN-------NLAWLEVRNCDSLEE 108 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~l~-------~L~~L~i~~c~~l~~ 108 (320)
.+++|+.|+++++.-...++ .....+++|+.|+++++..+.. ..|..+ ..++ +|++|++++| .++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP----~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N-~L~~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP----DFLYDLPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYN-NLEE 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC----GGGGGCSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSS-CCCB
T ss_pred cCCCCCEEECcCCCCCccCh----HHHhCCCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCC-cCCc
Confidence 58999999999887555432 2356789999999999854654 455443 4554 9999999999 6766
Q ss_pred eccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccc
Q 041021 109 VLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQ 188 (320)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 188 (320)
+|... ....+++|+.|+++++ .+..++ .+..+++|+.|+++++. +..+|.. + .
T Consensus 563 ip~~~--------~l~~L~~L~~L~Ls~N-~l~~lp----~~~~L~~L~~L~Ls~N~-l~~lp~~-l------------~ 615 (876)
T 4ecn_A 563 FPASA--------SLQKMVKLGLLDCVHN-KVRHLE----AFGTNVKLTDLKLDYNQ-IEEIPED-F------------C 615 (876)
T ss_dssp CCCHH--------HHTTCTTCCEEECTTS-CCCBCC----CCCTTSEESEEECCSSC-CSCCCTT-S------------C
T ss_pred cCChh--------hhhcCCCCCEEECCCC-Ccccch----hhcCCCcceEEECcCCc-cccchHH-H------------h
Confidence 64300 1224589999999998 455665 25678999999999875 4555532 1 1
Q ss_pred cccC-hhHHh--hcccccchHHHhcCC--CCCceeccccccCc------------cccCccceEEEccCCCcccccCCc-
Q 041021 189 KLKS-EENLL--VANQIHLFDEKLSGL--HKVQHLWKENAESN------------KVFANLKSLEIFECSKLQKLVPTS- 250 (320)
Q Consensus 189 ~l~~-l~~L~--~~~~~~~~~~li~~~--~~L~~l~~~~~~~~------------~~~~~L~~L~i~~c~~l~~l~~~~- 250 (320)
.+.+ ++.|. .+....+|.. +... ++|+.+.+.++... ...++|+.|+++++ .++.++...
T Consensus 616 ~l~~~L~~L~Ls~N~L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~ 693 (876)
T 4ecn_A 616 AFTDQVEGLGFSHNKLKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELF 693 (876)
T ss_dssp EECTTCCEEECCSSCCCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHH
T ss_pred hccccCCEEECcCCCCCcCchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHH
Confidence 2222 33221 1222244433 3333 34888877665432 13348999999987 566776554
Q ss_pred cCCCCccEEeecCccccccccCcchh------hhccccCEEeEccc
Q 041021 251 WHLENLATLEVSKCHGLINLLTLSTS------ESLVNLERMKITDC 290 (320)
Q Consensus 251 ~~~~~L~~L~l~~c~~l~~l~~~~~~------~~l~~L~~L~l~~C 290 (320)
..+++|+.|+++++ +++.+|..... .++++|++|++++|
T Consensus 694 ~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 694 ATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp HTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred ccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC
Confidence 37899999999996 57777663221 23458999999987
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=1.7e-11 Score=107.32 Aligned_cols=190 Identities=18% Similarity=0.119 Sum_probs=126.9
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
++++++++++.+ .+++.++.. ..++++.|++.++ .+....+.. +..+++|++|+++++ .++.++..
T Consensus 8 ~l~~l~~l~~~~-~~l~~ip~~------~~~~l~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~---- 73 (290)
T 1p9a_G 8 KVASHLEVNCDK-RNLTALPPD------LPKDTTILHLSEN-LLYTFSLAT-LMPYTRLTQLNLDRA-ELTKLQVD---- 73 (290)
T ss_dssp CSTTCCEEECTT-SCCSSCCSC------CCTTCCEEECTTS-CCSEEEGGG-GTTCTTCCEEECTTS-CCCEEECC----
T ss_pred ccCCccEEECCC-CCCCcCCCC------CCCCCCEEEcCCC-cCCccCHHH-hhcCCCCCEEECCCC-ccCcccCC----
Confidence 467888888875 345553322 2478899999886 466644443 478899999999988 67776441
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
..+++|++|+++++ .+..++. .+..+++|++|+++++ +++.++...
T Consensus 74 -------~~l~~L~~L~Ls~N-~l~~l~~---~~~~l~~L~~L~l~~N-~l~~l~~~~---------------------- 119 (290)
T 1p9a_G 74 -------GTLPVLGTLDLSHN-QLQSLPL---LGQTLPALTVLDVSFN-RLTSLPLGA---------------------- 119 (290)
T ss_dssp -------SCCTTCCEEECCSS-CCSSCCC---CTTTCTTCCEEECCSS-CCCCCCSST----------------------
T ss_pred -------CCCCcCCEEECCCC-cCCcCch---hhccCCCCCEEECCCC-cCcccCHHH----------------------
Confidence 24588999999887 6666654 3466888899988876 455554321
Q ss_pred hhcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCc-cCCCCccEEeecCccccc
Q 041021 197 LVANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTS-WHLENLATLEVSKCHGLI 268 (320)
Q Consensus 197 ~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~ 268 (320)
+.++++|+.+.+.++... ..+++|+.|+++++ +++.++... ..+++|++|+++++ +++
T Consensus 120 ------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~ 185 (290)
T 1p9a_G 120 ------------LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLY 185 (290)
T ss_dssp ------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred ------------HcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCC
Confidence 455666666666554322 45677888888876 566666543 56788888888874 577
Q ss_pred cccCcchhhhccccCEEeEccc
Q 041021 269 NLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 269 ~l~~~~~~~~l~~L~~L~l~~C 290 (320)
.+|.. ....++|+.++++++
T Consensus 186 ~ip~~--~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 186 TIPKG--FFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCCTT--TTTTCCCSEEECCSC
T ss_pred ccChh--hcccccCCeEEeCCC
Confidence 77653 234567888888754
No 66
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=8.7e-12 Score=112.03 Aligned_cols=223 Identities=20% Similarity=0.207 Sum_probs=132.5
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
++++|+|+++ +++.+. ...| .++++|++|+++++.-++.+..+ .+..+++++++.+.++..+
T Consensus 31 ~l~~L~Ls~N-~i~~i~---~~~f-----------~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 31 NAIELRFVLT-KLRVIQ---KGAF-----------SGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp TCSEEEEESC-CCSEEC---TTSS-----------TTCTTCCEEEEECCTTCCEECTT---SBCSCTTCCEEEEEEETTC
T ss_pred CCCEEEccCC-cCCCcC---HHHH-----------cCCCCCCEEECcCCCCCCccChh---HhhcchhhhhhhcccCCcc
Confidence 4677888774 566662 1122 34899999999988755543322 2456788888777777788
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCC-CCccEE
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIEL-PKLEYL 159 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l-~~L~~l 159 (320)
..+.+.. +..+++|++|+++++ .++.++... ... ..++..+++.++.++..++... ...+ ..++.+
T Consensus 93 ~~l~~~~-f~~l~~L~~L~l~~n-~l~~~~~~~--------~~~-~~~l~~l~l~~~~~i~~l~~~~--f~~~~~~l~~L 159 (350)
T 4ay9_X 93 LYINPEA-FQNLPNLQYLLISNT-GIKHLPDVH--------KIH-SLQKVLLDIQDNINIHTIERNS--FVGLSFESVIL 159 (350)
T ss_dssp CEECTTS-BCCCTTCCEEEEEEE-CCSSCCCCT--------TCC-BSSCEEEEEESCTTCCEECTTS--STTSBSSCEEE
T ss_pred cccCchh-hhhcccccccccccc-ccccCCchh--------hcc-cchhhhhhhccccccccccccc--hhhcchhhhhh
Confidence 8865543 588999999999998 677765421 111 2567788888877887776543 2223 357778
Q ss_pred eeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCccccCccceEEEcc
Q 041021 160 IIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESNKVFANLKSLEIFE 239 (320)
Q Consensus 160 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~~~~~~L~~L~i~~ 239 (320)
+++++ .++.++...+. ...+..+. +.++..++.+..+.+ ..+++|+.|++++
T Consensus 160 ~L~~N-~i~~i~~~~f~-------------~~~L~~l~-----------l~~~n~l~~i~~~~f---~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 160 WLNKN-GIQEIHNSAFN-------------GTQLDELN-----------LSDNNNLEELPNDVF---HGASGPVILDISR 211 (350)
T ss_dssp ECCSS-CCCEECTTSST-------------TEEEEEEE-----------CTTCTTCCCCCTTTT---TTEECCSEEECTT
T ss_pred ccccc-cccCCChhhcc-------------ccchhHHh-----------hccCCcccCCCHHHh---ccCcccchhhcCC
Confidence 88774 46666544221 00111100 222223333322222 4555666666666
Q ss_pred CCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEc
Q 041021 240 CSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKIT 288 (320)
Q Consensus 240 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 288 (320)
+ +++.++. ..+..|++|.+.+++.++.+|.. ..+++|+.+++.
T Consensus 212 N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l---~~l~~L~~l~l~ 254 (350)
T 4ay9_X 212 T-RIHSLPS--YGLENLKKLRARSTYNLKKLPTL---EKLVALMEASLT 254 (350)
T ss_dssp S-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCT---TTCCSCCEEECS
T ss_pred C-CcCccCh--hhhccchHhhhccCCCcCcCCCc---hhCcChhhCcCC
Confidence 4 5566654 23566666666666666666542 355666666654
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.35 E-value=1.5e-11 Score=108.48 Aligned_cols=187 Identities=16% Similarity=0.226 Sum_probs=134.3
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
+|++|++++| +++.+. + ...+++|+.|+++++. +..+.. ...+++|++|+++++. +
T Consensus 42 ~L~~L~l~~~-~i~~l~-----~-----------~~~l~~L~~L~L~~n~-i~~~~~-----~~~l~~L~~L~L~~n~-l 97 (308)
T 1h6u_A 42 GITTLSAFGT-GVTTIE-----G-----------VQYLNNLIGLELKDNQ-ITDLAP-----LKNLTKITELELSGNP-L 97 (308)
T ss_dssp TCCEEECTTS-CCCCCT-----T-----------GGGCTTCCEEECCSSC-CCCCGG-----GTTCCSCCEEECCSCC-C
T ss_pred CcCEEEeeCC-CccCch-----h-----------hhccCCCCEEEccCCc-CCCChh-----HccCCCCCEEEccCCc-C
Confidence 4778888886 444431 1 1247999999999874 444221 4678999999999974 6
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEe
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLI 160 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~ 160 (320)
... + .+..+++|++|++++| .++.++. ...+++|++|+++++ .+..++. +..+++|++|+
T Consensus 98 ~~~-~--~~~~l~~L~~L~l~~n-~l~~~~~-----------l~~l~~L~~L~l~~n-~l~~~~~----l~~l~~L~~L~ 157 (308)
T 1h6u_A 98 KNV-S--AIAGLQSIKTLDLTST-QITDVTP-----------LAGLSNLQVLYLDLN-QITNISP----LAGLTNLQYLS 157 (308)
T ss_dssp SCC-G--GGTTCTTCCEEECTTS-CCCCCGG-----------GTTCTTCCEEECCSS-CCCCCGG----GGGCTTCCEEE
T ss_pred CCc-h--hhcCCCCCCEEECCCC-CCCCchh-----------hcCCCCCCEEECCCC-ccCcCcc----ccCCCCccEEE
Confidence 663 3 2578999999999999 6777643 224689999999998 5655543 45689999999
Q ss_pred eecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCc-----cccCccceE
Q 041021 161 IENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN-----KVFANLKSL 235 (320)
Q Consensus 161 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L 235 (320)
++++ .++.++. +..+++|+.+.+.++... ..+++|+.|
T Consensus 158 l~~n-~l~~~~~------------------------------------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 200 (308)
T 1h6u_A 158 IGNA-QVSDLTP------------------------------------LANLSKLTTLKADDNKISDISPLASLPNLIEV 200 (308)
T ss_dssp CCSS-CCCCCGG------------------------------------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred ccCC-cCCCChh------------------------------------hcCCCCCCEEECCCCccCcChhhcCCCCCCEE
Confidence 9987 3444332 445677777777665432 677899999
Q ss_pred EEccCCCcccccCCccCCCCccEEeecCcccccccc
Q 041021 236 EIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLL 271 (320)
Q Consensus 236 ~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 271 (320)
+++++ .++.+++ +..+++|+.|++++++ ++..+
T Consensus 201 ~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 201 HLKNN-QISDVSP-LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp ECTTS-CCCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred EccCC-ccCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence 99997 5666654 5789999999999864 55543
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.35 E-value=1.4e-11 Score=118.76 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=85.7
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
++++|+|++. .++.+. ..+| .++++|+.|+++++. ++.+..+ .+..+++|++|+++++ .+
T Consensus 53 ~~~~LdLs~N-~i~~l~---~~~f-----------~~l~~L~~L~Ls~N~-i~~i~~~---~f~~L~~L~~L~Ls~N-~l 112 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLG---SYSF-----------FSFPELQVLDLSRCE-IQTIEDG---AYQSLSHLSTLILTGN-PI 112 (635)
T ss_dssp TCCEEECTTS-CCCEEC---TTTT-----------TTCTTCCEEECTTCC-CCEECTT---TTTTCTTCCEEECTTC-CC
T ss_pred CCCEEEeeCC-CCCCCC---HHHH-----------hCCCCCCEEECCCCc-CCCcChh---HhcCCCCCCEEEccCC-cC
Confidence 3567777763 566552 1122 347889999998764 5554332 2567889999999887 57
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEe
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLI 160 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~ 160 (320)
..+++. .+..+++|++|++++| .++.++. .....+++|++|+++++ .+..+.... ....+++|++|+
T Consensus 113 ~~l~~~-~f~~L~~L~~L~Ls~N-~l~~l~~---------~~~~~L~~L~~L~Ls~N-~l~~~~~~~-~~~~l~~L~~L~ 179 (635)
T 4g8a_A 113 QSLALG-AFSGLSSLQKLVAVET-NLASLEN---------FPIGHLKTLKELNVAHN-LIQSFKLPE-YFSNLTNLEHLD 179 (635)
T ss_dssp CEECGG-GGTTCTTCCEEECTTS-CCCCSTT---------CCCTTCTTCCEEECCSS-CCCCCCCCG-GGGGCTTCCEEE
T ss_pred CCCCHH-HhcCCCCCCEEECCCC-cCCCCCh---------hhhhcCcccCeeccccC-ccccCCCch-hhccchhhhhhc
Confidence 774443 4588899999999988 6777654 11234588888888877 444333222 345678888888
Q ss_pred eecC
Q 041021 161 IENC 164 (320)
Q Consensus 161 l~~c 164 (320)
++++
T Consensus 180 L~~N 183 (635)
T 4g8a_A 180 LSSN 183 (635)
T ss_dssp CCSS
T ss_pred ccCc
Confidence 8765
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.34 E-value=2.8e-13 Score=129.96 Aligned_cols=209 Identities=13% Similarity=0.025 Sum_probs=108.4
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEcc----------Cccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRN----------CDSL 106 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~----------c~~l 106 (320)
.+++|++|+++++. +...... .....+++|++|.+.++ +.+.....++..+++|++|++++ |..+
T Consensus 291 ~~~~L~~L~Ls~~~-l~~~~~~--~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LETEDHC--TLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGCCEEEETTCC-CCHHHHH--HHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred hcCCCcEEecCCCc-CCHHHHH--HHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 45667777776665 3221110 01234567777776632 33322333445667777777774 5444
Q ss_pred ceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeec---CCCCCccccCcccccccccc
Q 041021 107 EEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIEN---CPDMETFTSNSTFVLYMTTD 183 (320)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~---c~~l~~~~~~~~~~~~~~~~ 183 (320)
+.... ......+++|++|++ .|.++....... ....+++|++|++.+ |+.++..|...
T Consensus 366 ~~~~~--------~~l~~~~~~L~~L~l-~~~~l~~~~~~~-l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--------- 426 (592)
T 3ogk_B 366 SQRGL--------IALAQGCQELEYMAV-YVSDITNESLES-IGTYLKNLCDFRLVLLDREERITDLPLDN--------- 426 (592)
T ss_dssp CHHHH--------HHHHHHCTTCSEEEE-EESCCCHHHHHH-HHHHCCSCCEEEEEECSCCSCCSSCCCHH---------
T ss_pred CHHHH--------HHHHhhCccCeEEEe-ecCCccHHHHHH-HHhhCCCCcEEEEeecCCCccccCchHHH---------
Confidence 43211 011123467777777 344443322211 111267777777764 44444432110
Q ss_pred ccccccccChhHHhhcccccchHHHhcCCCCCceecccccc--C-c-------cccCccceEEEccCCCccc--ccCCcc
Q 041021 184 NKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAE--S-N-------KVFANLKSLEIFECSKLQK--LVPTSW 251 (320)
Q Consensus 184 ~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~--~-~-------~~~~~L~~L~i~~c~~l~~--l~~~~~ 251 (320)
. ++ .++.+|++|+.+.+..+. . . ..+++|+.|++++|. +++ ++....
T Consensus 427 -----~--------------~~-~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~ 485 (592)
T 3ogk_B 427 -----G--------------VR-SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSR 485 (592)
T ss_dssp -----H--------------HH-HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHT
T ss_pred -----H--------------HH-HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHh
Confidence 0 00 005557777777663211 0 0 346778888887764 433 222335
Q ss_pred CCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 252 HLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 252 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
.+++|++|++++|+ +++.....++..+++|++|++++|+
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 67788888888877 5544333445567788888888776
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.34 E-value=5.4e-13 Score=127.97 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=68.0
Q ss_pred hcCCCCCceeccccccCc-------cccCccceEEEcc----------CCCccccc--CCccCCCCccEEeecCcccccc
Q 041021 209 LSGLHKVQHLWKENAESN-------KVFANLKSLEIFE----------CSKLQKLV--PTSWHLENLATLEVSKCHGLIN 269 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~----------c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~ 269 (320)
+..|++|+.+.+.+.... ..+++|++|++.+ |..++... .....+++|++|++ +|+.+++
T Consensus 314 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~ 392 (592)
T 3ogk_B 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITN 392 (592)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCH
T ss_pred HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccH
Confidence 678888888877532111 4578899999985 77766432 22245788999998 6677776
Q ss_pred ccCcchhhhccccCEEeEccc---cccceeecccccccccceeEecccceeec
Q 041021 270 LLTLSTSESLVNLERMKITDC---KMMEEIIQSQVGEEAEDCIVFRKLECLGL 319 (320)
Q Consensus 270 l~~~~~~~~l~~L~~L~l~~C---~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 319 (320)
.....+...+++|++|++++| .++...... .+-. .....+++|++|+|
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~~-~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVR-SLLIGCKKLRRFAF 443 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHHH-HHHHHCTTCCEEEE
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHH-HHHH-HHHHhCCCCCEEEE
Confidence 544455566888999999854 444322110 0000 11334889999886
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.33 E-value=3.3e-11 Score=113.82 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=29.1
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCcccc-CchhHHhhcccCCeEEEccC
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSA-IPANLLWCLNNLAWLEVRNC 103 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~l~~L~~L~i~~c 103 (320)
+++|++|+++++. ++.++. . .+++|++|+++++ .+... .|.. +..+++|++|+++++
T Consensus 68 l~~L~~L~Ls~N~-l~~lp~-----~-~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 68 NQELEYLDLSHNK-LVKISC-----H-PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTT 125 (520)
T ss_dssp CTTCCEEECCSSC-CCEEEC-----C-CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEES
T ss_pred ccCCCEEecCCCc-eeecCc-----c-ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCc
Confidence 4556666665442 333211 1 4566666666665 33332 2222 356666666666665
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.32 E-value=9.3e-12 Score=110.02 Aligned_cols=198 Identities=19% Similarity=0.161 Sum_probs=93.2
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhc-----ccCCeEEEccCcccceeccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCL-----NNLAWLEVRNCDSLEEVLHL 112 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~i~~c~~l~~i~~~ 112 (320)
+++|++|+++++. +....... .....+++|++|+++++ .+... |.. +..+ ++|++|+++++ .++.++.
T Consensus 94 l~~L~~L~L~~n~-l~~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N-~l~~~~~- 166 (312)
T 1wwl_A 94 ISGLQELTLENLE-VTGTAPPP-LLEATGPDLNILNLRNV-SWATR-DAW-LAELQQWLKPGLKVLSIAQA-HSLNFSC- 166 (312)
T ss_dssp TSCCCEEEEEEEB-CBSCCCCC-SSSCCSCCCSEEEEESC-BCSSS-SSH-HHHHHTTCCTTCCEEEEESC-SCCCCCT-
T ss_pred cCCccEEEccCCc-ccchhHHH-HHHhcCCCccEEEccCC-CCcch-hHH-HHHHHHhhcCCCcEEEeeCC-CCccchH-
Confidence 5566666666544 22111100 00144566666666664 34443 322 2444 66666666666 4544432
Q ss_pred cccccccCCCCCcCCccCeEeecCCccccc--ccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccc
Q 041021 113 EELSADKEHIGPLFPKLSELRLIDLPKLKR--FCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKL 190 (320)
Q Consensus 113 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l 190 (320)
.....+++|++|+++++.-... ++... ....+++|++|+++++. ++.++.
T Consensus 167 --------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~------------------ 218 (312)
T 1wwl_A 167 --------EQVRVFPALSTLDLSDNPELGERGLISAL-CPLKFPTLQVLALRNAG-METPSG------------------ 218 (312)
T ss_dssp --------TTCCCCSSCCEEECCSCTTCHHHHHHHHS-CTTSCTTCCEEECTTSC-CCCHHH------------------
T ss_pred --------HHhccCCCCCEEECCCCCcCcchHHHHHH-HhccCCCCCEEECCCCc-CcchHH------------------
Confidence 1111246666666666642221 11100 11345666666666652 221110
Q ss_pred cChhHHhhcccccchHHHhcCCCCCceeccccccCc--------cccCccceEEEccCCCcccccCCccCCCCccEEeec
Q 041021 191 KSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN--------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVS 262 (320)
Q Consensus 191 ~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~--------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~ 262 (320)
++..++..+++|+.+.++++... ..+++|+.|+++++ .++.++.... ++|++|+++
T Consensus 219 -------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 219 -------------VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLS 282 (312)
T ss_dssp -------------HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECC
T ss_pred -------------HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECC
Confidence 00011345556666655443221 23456666666665 3445554332 566666666
Q ss_pred CccccccccCcchhhhccccCEEeEccc
Q 041021 263 KCHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 263 ~c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
++ +++.+|. ...+++|++|++++.
T Consensus 283 ~N-~l~~~p~---~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 283 YN-RLDRNPS---PDELPQVGNLSLKGN 306 (312)
T ss_dssp SS-CCCSCCC---TTTSCEEEEEECTTC
T ss_pred CC-CCCCChh---HhhCCCCCEEeccCC
Confidence 63 4555533 235566666666554
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.30 E-value=5.3e-11 Score=103.02 Aligned_cols=170 Identities=15% Similarity=0.238 Sum_probs=105.1
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|+.|.+.++. +..+ .....+++|++|++.++ .+... + .+..+++|++|++++| .++.++.
T Consensus 39 ~l~~L~~L~l~~~~-i~~~-----~~l~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~L~~n-~l~~~~~----- 102 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSV-----QGIQYLPNVRYLALGGN-KLHDI-S--ALKELTNLTYLILTGN-QLQSLPN----- 102 (272)
T ss_dssp HHTTCCEEECTTSC-CCCC-----TTGGGCTTCCEEECTTS-CCCCC-G--GGTTCTTCCEEECTTS-CCCCCCT-----
T ss_pred cccceeeeeeCCCC-cccc-----cccccCCCCcEEECCCC-CCCCc-h--hhcCCCCCCEEECCCC-ccCccCh-----
Confidence 56788888887654 3331 12456788899988886 45552 2 2467888999998888 6666543
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
.....+++|++|+++++ ++..++... +..+++|++|+++++ .++.++...
T Consensus 103 ----~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~---------------------- 152 (272)
T 3rfs_A 103 ----GVFDKLTNLKELVLVEN-QLQSLPDGV--FDKLTNLTYLNLAHN-QLQSLPKGV---------------------- 152 (272)
T ss_dssp ----TTTTTCTTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCCCCTTT----------------------
T ss_pred ----hHhcCCcCCCEEECCCC-cCCccCHHH--hccCCCCCEEECCCC-ccCccCHHH----------------------
Confidence 11223588888888887 565555432 456788888888887 355443220
Q ss_pred hhcccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCC-ccCCCCccEEeecCcc
Q 041021 197 LVANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKCH 265 (320)
Q Consensus 197 ~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 265 (320)
+..+++|+.+.+.++... ..+++|+.|++.++ .++.+++. +..+++|++|++++++
T Consensus 153 ------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 153 ------------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence 345556666655543221 34566666666665 34444432 3556666666666654
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.30 E-value=4.1e-11 Score=114.40 Aligned_cols=104 Identities=20% Similarity=0.209 Sum_probs=55.8
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|++|+++++. +..+... ....+++|++|+++++ .+....+.. +..+++|++|+++++ .++.++..
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~------ 118 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMP---DISFLSELRVLRLSHN-RIRSLDFHV-FLFNQDLEYLDVSHN-RLQNISCC------ 118 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGG---GTTTCTTCCEEECCSC-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECSC------
T ss_pred CCcCEEECCCCC-ccccChh---hhccCCCccEEECCCC-CCCcCCHHH-hCCCCCCCEEECCCC-cCCccCcc------
Confidence 567777776554 3332211 2345667777777765 455544433 356677777777776 56665431
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeec
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIEN 163 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~ 163 (320)
.+++|++|+++++ ++..++... .+..+++|++|++++
T Consensus 119 ------~l~~L~~L~Ls~N-~l~~l~~p~-~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 119 ------PMASLRHLDLSFN-DFDVLPVCK-EFGNLTKLTFLGLSA 155 (562)
T ss_dssp ------CCTTCSEEECCSS-CCSBCCCCG-GGGGCTTCCEEEEEC
T ss_pred ------ccccCCEEECCCC-CccccCchH-hhcccCcccEEecCC
Confidence 2356666666655 343333211 234455555555554
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.29 E-value=7.7e-11 Score=112.47 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=30.0
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccce
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEE 108 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 108 (320)
+++|++|+++++. +..+... ....+++|++|+++++ .+..++.. .+++|++|++++| .++.
T Consensus 75 l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~Ls~N-~l~~ 135 (562)
T 3a79_B 75 LSELRVLRLSHNR-IRSLDFH---VFLFNQDLEYLDVSHN-RLQNISCC----PMASLRHLDLSFN-DFDV 135 (562)
T ss_dssp CTTCCEEECCSCC-CCEECTT---TTTTCTTCCEEECTTS-CCCEECSC----CCTTCSEEECCSS-CCSB
T ss_pred CCCccEEECCCCC-CCcCCHH---HhCCCCCCCEEECCCC-cCCccCcc----ccccCCEEECCCC-Cccc
Confidence 5666666666542 3332221 1344556666666654 34442221 4555666666555 3444
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.29 E-value=5.4e-11 Score=103.06 Aligned_cols=199 Identities=18% Similarity=0.138 Sum_probs=128.9
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNM 80 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 80 (320)
+|++|+++++ +++.+.. .. ...+++|++|+++++. +..+... ....+++|++|+++++ .+
T Consensus 29 ~l~~L~ls~n-~l~~~~~---~~-----------~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l 88 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGS---YS-----------FFSFPELQVLDLSRCE-IQTIEDG---AYQSLSHLSTLILTGN-PI 88 (276)
T ss_dssp TCCEEECTTC-CCCEECT---TT-----------TTTCTTCSEEECTTCC-CCEECTT---TTTTCTTCCEEECTTC-CC
T ss_pred CccEEECCCC-cccccCH---hH-----------hccccCCcEEECCCCc-CCccCHH---HccCCcCCCEEECCCC-cc
Confidence 3677888776 4555511 11 2347999999999874 5543322 3567899999999997 56
Q ss_pred cccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEe
Q 041021 81 SSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLI 160 (320)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~ 160 (320)
....+.. +..+++|++|+++++ .++.++. .....+++|++|+++++ .+..+.... .+..+++|++|+
T Consensus 89 ~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~l~~-~~~~l~~L~~L~ 155 (276)
T 2z62_A 89 QSLALGA-FSGLSSLQKLVAVET-NLASLEN---------FPIGHLKTLKELNVAHN-LIQSFKLPE-YFSNLTNLEHLD 155 (276)
T ss_dssp CEECTTT-TTTCTTCCEEECTTS-CCCCSTT---------CCCTTCTTCCEEECCSS-CCCCCCCCG-GGGGCTTCCEEE
T ss_pred CccChhh-hcCCccccEEECCCC-CccccCc---------hhcccCCCCCEEECcCC-ccceecCch-hhccCCCCCEEE
Confidence 6655443 478999999999998 6666543 11234589999999988 455432111 456789999999
Q ss_pred eecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCc-eeccccccCc------cccCccc
Q 041021 161 IENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQ-HLWKENAESN------KVFANLK 233 (320)
Q Consensus 161 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~-~l~~~~~~~~------~~~~~L~ 233 (320)
++++. ++.++...+ .. +..++.+. .+.+.++... ....+|+
T Consensus 156 Ls~N~-l~~~~~~~~---------------~~----------------l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~ 203 (276)
T 2z62_A 156 LSSNK-IQSIYCTDL---------------RV----------------LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203 (276)
T ss_dssp CCSSC-CCEECGGGG---------------HH----------------HHTCTTCCEEEECCSSCCCEECTTSSCSCCEE
T ss_pred CCCCC-CCcCCHHHh---------------hh----------------hhhccccceeeecCCCcccccCccccCCCccc
Confidence 99874 554432211 00 11222222 3444333221 2334899
Q ss_pred eEEEccCCCcccccCC-ccCCCCccEEeecCcc
Q 041021 234 SLEIFECSKLQKLVPT-SWHLENLATLEVSKCH 265 (320)
Q Consensus 234 ~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 265 (320)
.|+++++ .++.++.. ...+++|++|++++++
T Consensus 204 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 204 ELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred EEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 9999997 47777664 3779999999999754
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.29 E-value=1.2e-10 Score=112.24 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=36.5
Q ss_pred CCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccC
Q 041021 66 FNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCN 145 (320)
Q Consensus 66 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 145 (320)
+++|+.|++.++ .+..++. .+++|++|++++| .++.++. .+++|+.|+++++ ++..++
T Consensus 120 l~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~l~~-------------~~~~L~~L~L~~N-~l~~l~- 177 (622)
T 3g06_A 120 PSGLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDN-QLASLPA-------------LPSELCKLWAYNN-QLTSLP- 177 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSS-CCSCCC-
T ss_pred CCCcCEEECCCC-CCCcCCC-----CCCCCCEEECcCC-cCCCcCC-------------ccCCCCEEECCCC-CCCCCc-
Confidence 345555555544 2333221 2356666666665 4444322 2356666666665 444443
Q ss_pred CCccccCCCCccEEeeecC
Q 041021 146 FTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 146 ~~~~~~~l~~L~~l~l~~c 164 (320)
..+++|+.|+++++
T Consensus 178 -----~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 178 -----MLPSGLQELSVSDN 191 (622)
T ss_dssp -----CCCTTCCEEECCSS
T ss_pred -----ccCCCCcEEECCCC
Confidence 12566777777665
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.29 E-value=3.8e-11 Score=113.41 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=34.0
Q ss_pred ccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCc-chhhhccccCEEeEcccc
Q 041021 228 VFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTL-STSESLVNLERMKITDCK 291 (320)
Q Consensus 228 ~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~l~~C~ 291 (320)
.+++|+.|+++++.-...++..+..+++|++|++++|. ++.++.. .....+++|++|++++|.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc
Confidence 44566666666653322244445566677777776643 4433211 123456677777776653
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.28 E-value=9.2e-11 Score=101.36 Aligned_cols=193 Identities=18% Similarity=0.185 Sum_probs=132.2
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
.+.+.+++++. +++.++. ...+++++|++.++ .+..+.+.. +..+++|++|+++++ .++.++.
T Consensus 16 ~~~~~l~~~~~-~l~~ip~------~~~~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~i~~------- 78 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLTAIPS------NIPADTKKLDLQSN-KLSSLPSKA-FHRLTKLRLLYLNDN-KLQTLPA------- 78 (270)
T ss_dssp TTTTEEECTTS-CCSSCCS------CCCTTCSEEECCSS-CCSCCCTTS-SSSCTTCCEEECCSS-CCSCCCT-------
T ss_pred CCCCEEEccCC-CCCccCC------CCCCCCCEEECcCC-CCCeeCHHH-hcCCCCCCEEECCCC-ccCeeCh-------
Confidence 35778888753 3555322 12368999999987 566644433 478999999999998 6776644
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhh
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLV 198 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 198 (320)
.....+++|++|+++++ .+..++... +..+++|++|+++++. ++.++...
T Consensus 79 --~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~------------------------ 128 (270)
T 2o6q_A 79 --GIFKELKNLETLWVTDN-KLQALPIGV--FDQLVNLAELRLDRNQ-LKSLPPRV------------------------ 128 (270)
T ss_dssp --TTTSSCTTCCEEECCSS-CCCCCCTTT--TTTCSSCCEEECCSSC-CCCCCTTT------------------------
T ss_pred --hhhcCCCCCCEEECCCC-cCCcCCHhH--cccccCCCEEECCCCc-cCeeCHHH------------------------
Confidence 11224589999999988 566665532 4668999999998864 44443220
Q ss_pred cccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCC-ccCCCCccEEeecCccccccc
Q 041021 199 ANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKCHGLINL 270 (320)
Q Consensus 199 ~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l 270 (320)
+..+++|+.+.+.++... ..+++|+.|+++++ .++.+++. +..+++|++|+++++ .++.+
T Consensus 129 ----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 196 (270)
T 2o6q_A 129 ----------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRV 196 (270)
T ss_dssp ----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred ----------hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcC
Confidence 455667777776654321 46788889988886 56666553 467888999999886 67777
Q ss_pred cCcchhhhccccCEEeEcccc
Q 041021 271 LTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 271 ~~~~~~~~l~~L~~L~l~~C~ 291 (320)
+.. ....+++|+.|++++++
T Consensus 197 ~~~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 197 PEG-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTT-TTTTCTTCCEEECCSSC
T ss_pred CHH-HhccccCCCEEEecCCC
Confidence 663 34567889999887754
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.28 E-value=1.6e-10 Score=107.45 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=30.1
Q ss_pred cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccc
Q 041021 227 KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
..+++|+.|+++++ .++.++. .+++|++|+++++. ++.++. ..++|++|++++|
T Consensus 234 ~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N 287 (454)
T 1jl5_A 234 QNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDNY-LTDLPE-----LPQSLTFLDVSEN 287 (454)
T ss_dssp TTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS
T ss_pred CCCCCCCEEECCCC-cCCcccc---cccccCEEECCCCc-ccccCc-----ccCcCCEEECcCC
Confidence 44556666666664 4444433 23666666666643 444433 2256777777665
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.26 E-value=3.2e-11 Score=114.55 Aligned_cols=221 Identities=18% Similarity=0.208 Sum_probs=140.8
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
.++|++|+++++. +..+... ....+++|++|+++++ .+....+.. +..+++|++|++++| .++.++..
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~----- 92 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHG---DLRACANLQVLILKSS-RINTIEGDA-FYSLGSLEHLDLSDN-HLSSLSSS----- 92 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSS---TTSSCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCSCCHH-----
T ss_pred CCCccEEECcCCc-cCccChh---hhhcCCcccEEECCCC-CcCccChhh-ccccccCCEEECCCC-ccCccCHH-----
Confidence 3689999999875 5554332 3567899999999997 576755544 488999999999999 67766441
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL 197 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 197 (320)
. ...+++|++|+++++ .+..+.... .+..+++|++|+++++..+..++...+ ..+.+++.|.
T Consensus 93 ---~-~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~------------~~l~~L~~L~ 154 (549)
T 2z81_A 93 ---W-FGPLSSLKYLNLMGN-PYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDF------------AGLTSLNELE 154 (549)
T ss_dssp ---H-HTTCTTCCEEECTTC-CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTT------------TTCCEEEEEE
T ss_pred ---H-hccCCCCcEEECCCC-cccccchhh-hhhccCCccEEECCCCccccccCHhhh------------hcccccCeee
Confidence 1 124589999999998 455433222 356799999999999876666553222 1222222221
Q ss_pred --hcccc-cchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCccccc----CCccCCCCccEEeecC
Q 041021 198 --VANQI-HLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLV----PTSWHLENLATLEVSK 263 (320)
Q Consensus 198 --~~~~~-~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~----~~~~~~~~L~~L~l~~ 263 (320)
.+... .+|.. +..+++|+.+.+.+.... ..+++|+.|+++++. ++.++ .....+++|+.|++++
T Consensus 155 L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 155 IKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRG 232 (549)
T ss_dssp EEETTCCEECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred ccCCcccccChhh-hhccccCceEecccCcccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccc
Confidence 11111 12223 666777777776554322 347788888888863 44331 1124567888888888
Q ss_pred ccccccccCc---chhhhccccCEEeEcccc
Q 041021 264 CHGLINLLTL---STSESLVNLERMKITDCK 291 (320)
Q Consensus 264 c~~l~~l~~~---~~~~~l~~L~~L~l~~C~ 291 (320)
+. +++.... .....+++|+.+++.+|.
T Consensus 233 n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 233 SV-LTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp CE-EEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cc-cchhHHHHHHHHhhhhcccccccccccc
Confidence 63 3322111 122456789999999885
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.26 E-value=2.7e-11 Score=106.89 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=39.9
Q ss_pred CCccEEeeccCcCccccCchhHH-hhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccC
Q 041021 67 NNLAQLVVDDCTNMSSAIPANLL-WCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCN 145 (320)
Q Consensus 67 ~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 145 (320)
++|++|++.+| .+....+..++ ..+++|++|++++| .++....... ......+++|++|+++++ .+..++.
T Consensus 91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~-----~~~~~~~~~L~~L~Ls~n-~l~~~~~ 162 (310)
T 4glp_A 91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLA-----ELQQWLKPGLKVLSIAQA-HSPAFSC 162 (310)
T ss_dssp SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHH-----HHHTTBCSCCCEEEEECC-SSCCCCT
T ss_pred CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhH-----HHHhhhccCCCEEEeeCC-CcchhhH
Confidence 45666666665 33333333222 45566666666665 3332110000 000012356666666655 3333332
Q ss_pred CCccccCCCCccEEeeecCC
Q 041021 146 FTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 146 ~~~~~~~l~~L~~l~l~~c~ 165 (320)
.. +..+++|++|+++++.
T Consensus 163 ~~--~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 163 EQ--VRAFPALTSLDLSDNP 180 (310)
T ss_dssp TS--CCCCTTCCEEECCSCT
T ss_pred HH--hccCCCCCEEECCCCC
Confidence 21 3445666666666553
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.25 E-value=7.8e-11 Score=103.05 Aligned_cols=101 Identities=20% Similarity=0.362 Sum_probs=61.2
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|+.|++.++. +..+ .....+++|+.|+++++ .+....+ +..+++|++|++++| .++.++.
T Consensus 44 ~l~~L~~L~l~~~~-i~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~----- 107 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSV-----QGIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDLSS----- 107 (291)
T ss_dssp HHHTCCEEECTTSC-CCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCGGG-----
T ss_pred hcCcccEEEccCCC-cccC-----hhHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC-cCCCChh-----
Confidence 46677777777653 3332 12345677777777775 4555333 467777777777777 5555432
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecC
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c 164 (320)
...+++|++|+++++ ++..++ .+..+++|+.|+++++
T Consensus 108 ------l~~l~~L~~L~L~~n-~i~~~~----~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 108 ------LKDLKKLKSLSLEHN-GISDIN----GLVHLPQLESLYLGNN 144 (291)
T ss_dssp ------GTTCTTCCEEECTTS-CCCCCG----GGGGCTTCCEEECCSS
T ss_pred ------hccCCCCCEEECCCC-cCCCCh----hhcCCCCCCEEEccCC
Confidence 123467777777776 454442 2455777777777765
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.25 E-value=1.6e-10 Score=98.67 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=42.1
Q ss_pred CCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCC
Q 041021 67 NNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNF 146 (320)
Q Consensus 67 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 146 (320)
++++.|++.++ .+....+.. +..+++|++|+++++ .++.++. .....+++|++|+++++ ++..++..
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~ 101 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDAT-FRGLTKLTWLNLDYN-QLQTLSA---------GVFDDLTELGTLGLANN-QLASLPLG 101 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCT---------TTTTTCTTCCEEECTTS-CCCCCCTT
T ss_pred CCCCEEEccCC-CcCccCHhH-hcCcccCCEEECCCC-cCCccCH---------hHhccCCcCCEEECCCC-cccccChh
Confidence 45666666664 344433322 355666666666665 4544432 11122356666666655 44444432
Q ss_pred CccccCCCCccEEeeecC
Q 041021 147 TGNIIELPKLEYLIIENC 164 (320)
Q Consensus 147 ~~~~~~l~~L~~l~l~~c 164 (320)
. +..+++|++|+++++
T Consensus 102 ~--~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 102 V--FDHLTQLDKLYLGGN 117 (251)
T ss_dssp T--TTTCTTCCEEECCSS
T ss_pred H--hcccCCCCEEEcCCC
Confidence 2 344566666666554
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.24 E-value=2.2e-10 Score=99.05 Aligned_cols=170 Identities=18% Similarity=0.219 Sum_probs=105.9
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
..+++|+.|.+.++ .+..... +..+++|++|++++| .++.++. ...+++|++|+++++ .+..+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~~---l~~l~~L~~L~l~~n-~l~~~~~-----------l~~l~~L~~L~L~~n-~l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQG---IQYLPNVRYLALGGN-KLHDISA-----------LKELTNLTYLILTGN-QLQSL 100 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCTT---GGGCTTCCEEECTTS-CCCCCGG-----------GTTCTTCCEEECTTS-CCCCC
T ss_pred ccccceeeeeeCCC-Ccccccc---cccCCCCcEEECCCC-CCCCchh-----------hcCCCCCCEEECCCC-ccCcc
Confidence 34677888888776 3444222 367788888888877 4555422 123478888888877 55555
Q ss_pred cCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccc
Q 041021 144 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENA 223 (320)
Q Consensus 144 ~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~ 223 (320)
+... +..+++|++|+++++. ++.++... +.++++|+.+.+.++
T Consensus 101 ~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~----------------------------------~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 101 PNGV--FDKLTNLKELVLVENQ-LQSLPDGV----------------------------------FDKLTNLTYLNLAHN 143 (272)
T ss_dssp CTTT--TTTCTTCCEEECTTSC-CCCCCTTT----------------------------------TTTCTTCCEEECCSS
T ss_pred ChhH--hcCCcCCCEEECCCCc-CCccCHHH----------------------------------hccCCCCCEEECCCC
Confidence 5422 4567788888887763 44333210 445666666666554
Q ss_pred cCc-------cccCccceEEEccCCCcccccCC-ccCCCCccEEeecCccccccccCcchhhhccccCEEeEccc
Q 041021 224 ESN-------KVFANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 224 ~~~-------~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
... ..+++|+.|+++++ .++.+++. +..+++|++|+++++ .++.++.. ....+++|++|+++++
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCHH-HHhCCcCCCEEEccCC
Confidence 321 45677888888876 45555543 356788888888875 46666542 3456778888887764
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=1.9e-11 Score=108.03 Aligned_cols=197 Identities=18% Similarity=0.171 Sum_probs=111.7
Q ss_pred CCCccEEeeccCcCccccCchhH-HhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccccc
Q 041021 66 FNNLAQLVVDDCTNMSSAIPANL-LWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFC 144 (320)
Q Consensus 66 ~~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 144 (320)
+++|++|++.++ .+....|..+ +..+++|++|+++++ .++.++.... ......+++|++|+++++ ++..++
T Consensus 94 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~l~~~~~~~L~~L~L~~N-~l~~~~ 165 (312)
T 1wwl_A 94 ISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLA-----ELQQWLKPGLKVLSIAQA-HSLNFS 165 (312)
T ss_dssp TSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHH-----HHHTTCCTTCCEEEEESC-SCCCCC
T ss_pred cCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHH-----HHHHhhcCCCcEEEeeCC-CCccch
Confidence 556666666665 3333233322 145666666666665 4444321000 000001256666666665 344443
Q ss_pred CCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHH-hcCCCCCceeccccc
Q 041021 145 NFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEK-LSGLHKVQHLWKENA 223 (320)
Q Consensus 145 ~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~l-i~~~~~L~~l~~~~~ 223 (320)
+.. +..+++|++|+++++.-.... .+|..+ +..+++|+.+.+.++
T Consensus 166 ~~~--~~~l~~L~~L~Ls~N~l~~~~--------------------------------~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 166 CEQ--VRVFPALSTLDLSDNPELGER--------------------------------GLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp TTT--CCCCSSCCEEECCSCTTCHHH--------------------------------HHHHHSCTTSCTTCCEEECTTS
T ss_pred HHH--hccCCCCCEEECCCCCcCcch--------------------------------HHHHHHHhccCCCCCEEECCCC
Confidence 322 445666666666665321110 011121 367888999988776
Q ss_pred cCc----------cccCccceEEEccCCCccccc--CCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 224 ESN----------KVFANLKSLEIFECSKLQKLV--PTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 224 ~~~----------~~~~~L~~L~i~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
... ..+++|+.|+++++ .++..+ .....+++|++|+++++ +++.+|.. +. ++|++|+++++
T Consensus 212 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~---~~L~~L~Ls~N- 284 (312)
T 1wwl_A 212 GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG-LP---AKLSVLDLSYN- 284 (312)
T ss_dssp CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS-CC---SEEEEEECCSS-
T ss_pred cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhhh-cc---CCceEEECCCC-
Confidence 442 25589999999997 455543 33456799999999996 47777663 22 78999999987
Q ss_pred ccceeecccccccccceeEecccceeecC
Q 041021 292 MMEEIIQSQVGEEAEDCIVFRKLECLGLD 320 (320)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 320 (320)
+++.+.. ...+++|+.|+|+
T Consensus 285 ~l~~~p~---------~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 285 RLDRNPS---------PDELPQVGNLSLK 304 (312)
T ss_dssp CCCSCCC---------TTTSCEEEEEECT
T ss_pred CCCCChh---------HhhCCCCCEEecc
Confidence 3433311 2247888888764
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.23 E-value=8.6e-10 Score=102.50 Aligned_cols=97 Identities=22% Similarity=0.231 Sum_probs=61.5
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|++|+++++. +..+. ...++|++|++.++ .+.. .| . +..+++|++|++++| .++.++.
T Consensus 109 ~~~~L~~L~l~~n~-l~~l~-------~~~~~L~~L~L~~n-~l~~-lp-~-~~~l~~L~~L~l~~N-~l~~lp~----- 170 (454)
T 1jl5_A 109 LPQSLKSLLVDNNN-LKALS-------DLPPLLEYLGVSNN-QLEK-LP-E-LQNSSFLKIIDVDNN-SLKKLPD----- 170 (454)
T ss_dssp CCTTCCEEECCSSC-CSCCC-------SCCTTCCEEECCSS-CCSS-CC-C-CTTCTTCCEEECCSS-CCSCCCC-----
T ss_pred ccCCCcEEECCCCc-cCccc-------CCCCCCCEEECcCC-CCCC-Cc-c-cCCCCCCCEEECCCC-cCcccCC-----
Confidence 34688888887653 33321 11268888888886 4555 33 2 477888888888888 5665533
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecC
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c 164 (320)
.+++|++|+++++ ++..++. +..+++|++++++++
T Consensus 171 --------~~~~L~~L~L~~n-~l~~l~~----~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 171 --------LPPSLEFIAAGNN-QLEELPE----LQNLPFLTAIYADNN 205 (454)
T ss_dssp --------CCTTCCEEECCSS-CCSSCCC----CTTCTTCCEEECCSS
T ss_pred --------CcccccEEECcCC-cCCcCcc----ccCCCCCCEEECCCC
Confidence 2257777777776 4554432 355677777777665
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=108.09 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=42.0
Q ss_pred ccCCCccEEeeccCcCccccCc---hhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIP---ANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKL 140 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 140 (320)
..+++|++|+++++. +....+ ...+..+++|++|++++| .+..++. .....+++|++|+++++.-.
T Consensus 114 ~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~---------~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 114 ATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSC---------EQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp CCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCT---------TSCCCCTTCCEEECCSCTTC
T ss_pred ccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhH---------HHhccCCCCCEEECCCCCCc
Confidence 445666666666652 332221 011134666666666666 4444332 11112366666666666322
Q ss_pred cc--ccCCCccccCCCCccEEeeecC
Q 041021 141 KR--FCNFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 141 ~~--~~~~~~~~~~l~~L~~l~l~~c 164 (320)
.. ++... ....+++|++|++++|
T Consensus 183 ~~~~~~~~~-~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 183 GERGLMAAL-CPHKFPAIQNLALRNT 207 (310)
T ss_dssp HHHHHHTTS-CTTSSCCCCSCBCCSS
T ss_pred cchhhhHHH-hhhcCCCCCEEECCCC
Confidence 11 21111 1234566666666665
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=1.8e-10 Score=94.75 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=93.8
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
..+++|++|++.++ .+..+. . +..+++|++|++++| .++.++. ...+++|++|+++++ ++...
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~l~~n-~~~~~~~-----------l~~l~~L~~L~l~~n-~l~~~ 103 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT--G-IEYAHNIKDLTINNI-HATNYNP-----------ISGLSNLERLRIMGK-DVTSD 103 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT--T-GGGCTTCSEEEEESC-CCSCCGG-----------GTTCTTCCEEEEECT-TCBGG
T ss_pred hhcCCccEEeccCC-CccChH--H-HhcCCCCCEEEccCC-CCCcchh-----------hhcCCCCCEEEeECC-ccCcc
Confidence 44677888888775 455433 1 467778888888777 5555422 113477777777776 44432
Q ss_pred cCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccc
Q 041021 144 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENA 223 (320)
Q Consensus 144 ~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~ 223 (320)
.+. .+..+++|++|+++++. ++..... . +
T Consensus 104 ~~~--~l~~l~~L~~L~Ls~n~-i~~~~~~---------------------------------~-l-------------- 132 (197)
T 4ezg_A 104 KIP--NLSGLTSLTLLDISHSA-HDDSILT---------------------------------K-I-------------- 132 (197)
T ss_dssp GSC--CCTTCTTCCEEECCSSB-CBGGGHH---------------------------------H-H--------------
T ss_pred cCh--hhcCCCCCCEEEecCCc-cCcHhHH---------------------------------H-H--------------
Confidence 221 24557777777777653 2210000 0 2
Q ss_pred cCccccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 224 ESNKVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 224 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
..+++|+.|++++|..+++++ .+..+++|++|++++| .+++++. ...+++|++|++++.+
T Consensus 133 ---~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~---l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 133 ---NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG---IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ---TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT---GGGCSSCCEEEECBC-
T ss_pred ---hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH---hccCCCCCEEEeeCcc
Confidence 344566677777776566665 4567899999999986 4777652 3577899999998764
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.21 E-value=3.2e-10 Score=99.10 Aligned_cols=170 Identities=19% Similarity=0.169 Sum_probs=121.5
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++++.|+++++. +..+... ....+++|++|++.++ .+..+.+. ..+++|++|+++++ .++.++.
T Consensus 31 ~~l~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~------- 94 (290)
T 1p9a_G 31 KDTTILHLSENL-LYTFSLA---TLMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQSLPL------- 94 (290)
T ss_dssp TTCCEEECTTSC-CSEEEGG---GGTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSSCCC-------
T ss_pred CCCCEEEcCCCc-CCccCHH---HhhcCCCCCEEECCCC-ccCcccCC---CCCCcCCEEECCCC-cCCcCch-------
Confidence 679999998765 4443221 2456899999999986 56664432 67899999999998 6776643
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhh
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLV 198 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 198 (320)
....+++|++|+++++ ++..+++.. +..+++|++|+++++ +++.++...
T Consensus 95 ---~~~~l~~L~~L~l~~N-~l~~l~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~------------------------ 143 (290)
T 1p9a_G 95 ---LGQTLPALTVLDVSFN-RLTSLPLGA--LRGLGELQELYLKGN-ELKTLPPGL------------------------ 143 (290)
T ss_dssp ---CTTTCTTCCEEECCSS-CCCCCCSST--TTTCTTCCEEECTTS-CCCCCCTTT------------------------
T ss_pred ---hhccCCCCCEEECCCC-cCcccCHHH--HcCCCCCCEEECCCC-CCCccChhh------------------------
Confidence 1234589999999987 666666543 567899999999886 455554321
Q ss_pred cccccchHHHhcCCCCCceeccccccCc-------cccCccceEEEccCCCcccccCCccCCCCccEEeecCccc
Q 041021 199 ANQIHLFDEKLSGLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHG 266 (320)
Q Consensus 199 ~~~~~~~~~li~~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 266 (320)
+..+++|+.+.+.++... ..+++|+.|++.++ .++.++......+.|+.|++++.+.
T Consensus 144 ----------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 144 ----------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ----------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ----------cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 445666777766654322 45789999999986 6788888777888999999987543
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=1.1e-10 Score=112.18 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=100.8
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|+.|+++++. +..+ .....+++|+.|.+++| .+..+.+ +..+++|++|++++| .++.++.
T Consensus 41 ~L~~L~~L~l~~n~-i~~l-----~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~----- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSV-----QGIQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKDLSS----- 104 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCC-----TTGGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCTT-----
T ss_pred cCCCCCEEECcCCC-CCCC-----hHHccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCCChh-----
Confidence 46778888877654 3332 12456788888888886 4555443 467888888888888 6666532
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
...+++|+.|+++++ .+..++ .+..+++|+.|++++|. +..++.
T Consensus 105 ------l~~l~~L~~L~Ls~N-~l~~l~----~l~~l~~L~~L~Ls~N~-l~~l~~------------------------ 148 (605)
T 1m9s_A 105 ------LKDLKKLKSLSLEHN-GISDIN----GLVHLPQLESLYLGNNK-ITDITV------------------------ 148 (605)
T ss_dssp ------STTCTTCCEEECTTS-CCCCCG----GGGGCTTCSEEECCSSC-CCCCGG------------------------
T ss_pred ------hccCCCCCEEEecCC-CCCCCc----cccCCCccCEEECCCCc-cCCchh------------------------
Confidence 123578888888877 455443 24567888888887763 333210
Q ss_pred hhcccccchHHHhcCCCCCceeccccccCc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCcc
Q 041021 197 LVANQIHLFDEKLSGLHKVQHLWKENAESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCH 265 (320)
Q Consensus 197 ~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 265 (320)
+..+++|+.|.++++... ..+++|+.|++++| .++.++ .+..+++|+.|++++|+
T Consensus 149 ------------l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 149 ------------LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ------------GGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred ------------hcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 555666666666554322 45566666666665 444442 34556666666666643
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=5.7e-12 Score=114.63 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=19.8
Q ss_pred cCCCccEEeeccCcCcccc----CchhHHhhcccCCeEEEccC
Q 041021 65 FFNNLAQLVVDDCTNMSSA----IPANLLWCLNNLAWLEVRNC 103 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~----~~~~~~~~l~~L~~L~i~~c 103 (320)
.+++|++|+++++ .++.. ++. .+..+++|++|++++|
T Consensus 92 ~~~~L~~L~Ls~n-~l~~~~~~~l~~-~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 92 KCPKLHTVRLSDN-AFGPTAQEPLID-FLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TCTTCCEEECCSC-CCCTTTHHHHHH-HHHHCTTCCEEECCSS
T ss_pred hCCcccEEECCCC-cCCHHHHHHHHH-HHHhCCCCCEEECcCC
Confidence 4566666666665 23331 111 2355666666666666
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.16 E-value=2.9e-10 Score=99.42 Aligned_cols=164 Identities=21% Similarity=0.288 Sum_probs=116.2
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
..+++|+.|.+.+| .+..+.. +..+++|++|++++| .++.++. ...+++|++|+++++ .+..+
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-----------l~~l~~L~~L~l~~n-~l~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-----------LANLKNLGWLFLDEN-KVKDL 105 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-----------GTTCTTCCEEECCSS-CCCCG
T ss_pred hhcCcccEEEccCC-CcccChh---HhcCCCCCEEEccCC-ccCCCcc-----------cccCCCCCEEECCCC-cCCCC
Confidence 45788999999887 5655432 477899999999988 6766543 224589999999987 56555
Q ss_pred cCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccc
Q 041021 144 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENA 223 (320)
Q Consensus 144 ~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~ 223 (320)
+. +..+++|++|+++++. ++.++. +..+++|+.+.+.++
T Consensus 106 ~~----l~~l~~L~~L~L~~n~-i~~~~~------------------------------------l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 106 SS----LKDLKKLKSLSLEHNG-ISDING------------------------------------LVHLPQLESLYLGNN 144 (291)
T ss_dssp GG----GTTCTTCCEEECTTSC-CCCCGG------------------------------------GGGCTTCCEEECCSS
T ss_pred hh----hccCCCCCEEECCCCc-CCCChh------------------------------------hcCCCCCCEEEccCC
Confidence 43 5668899999998873 444321 455667777766654
Q ss_pred cCc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 224 ESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 224 ~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
... ..+++|+.|+++++ .++.+++ +..+++|++|+++++ .+++++. ...+++|+.|++++++
T Consensus 145 ~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 145 KITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred cCCcchhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 332 56788888888887 5666655 667888888888886 5777643 3567888888888764
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.14 E-value=3.5e-12 Score=118.52 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=72.0
Q ss_pred CCceEeecCCCCceEeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCC--CCCCccCCCccEEeeccCc
Q 041021 1 SLVNLKVSGCPKLEEIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQ--ALPVSFFNNLAQLVVDDCT 78 (320)
Q Consensus 1 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~~~L~~L~l~~c~ 78 (320)
+|++|++++|. ++.. |-. . +. .....+++|++|+++++. +....... .......++|++|++++|
T Consensus 86 ~L~~L~L~~n~-i~~~----~~~--~--l~--~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n- 152 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGA----GCG--V--LS--STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC- 152 (461)
T ss_dssp CCCEEECTTSC-CBGG----GHH--H--HH--HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred ceeEEEccCCC-CCHH----HHH--H--HH--HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-
Confidence 38899999984 3321 100 0 00 112357899999998776 44311100 000122457888888887
Q ss_pred CccccCc---hhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc-----cCCCccc
Q 041021 79 NMSSAIP---ANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF-----CNFTGNI 150 (320)
Q Consensus 79 ~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-----~~~~~~~ 150 (320)
.+..... ...+..+++|++|++++|. +++....... .......++|++|++++| .+... +. .+
T Consensus 153 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~----~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~---~l 223 (461)
T 1z7x_W 153 SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLC----QGLKDSPCQLEALKLESC-GVTSDNCRDLCG---IV 223 (461)
T ss_dssp CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHH----HHHHHSCCCCCEEECTTS-CCBTTHHHHHHH---HH
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHH----HHHhcCCCCceEEEccCC-CCcHHHHHHHHH---HH
Confidence 4544221 1223567888888888873 5432110000 000001246777777766 33321 11 12
Q ss_pred cCCCCccEEeeecC
Q 041021 151 IELPKLEYLIIENC 164 (320)
Q Consensus 151 ~~l~~L~~l~l~~c 164 (320)
..+++|++++++++
T Consensus 224 ~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 224 ASKASLRELALGSN 237 (461)
T ss_dssp HHCTTCCEEECCSS
T ss_pred HhCCCccEEeccCC
Confidence 34566666666665
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.12 E-value=3.2e-12 Score=118.78 Aligned_cols=235 Identities=18% Similarity=0.137 Sum_probs=110.2
Q ss_pred eccccccEEeecCCccchhh-hcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcc----cCCeEEEccCcccceec
Q 041021 36 IGFRDIKYLQLSHFPRLQEI-WHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLN----NLAWLEVRNCDSLEEVL 110 (320)
Q Consensus 36 ~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~----~L~~L~i~~c~~l~~i~ 110 (320)
..+++|++|++++|. +... +..-+.....+++|++|+++++ .+.+..+..+...++ +|++|++++| .+++..
T Consensus 25 ~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~ 101 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAG 101 (461)
T ss_dssp HHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGG
T ss_pred hhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHH
Confidence 347788888888776 3321 0000001234678888888876 354433444445555 6888888887 454311
Q ss_pred cccccccccCCCCCcCCccCeEeecCCcccccccCCC---ccccCCCCccEEeeecCCCCCccccCcccccccccccccc
Q 041021 111 HLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFT---GNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEA 187 (320)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 187 (320)
... .......+++|++|+++++. +....... ......++|++|++++|. ++......+... .
T Consensus 102 ~~~-----l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~--------l 166 (461)
T 1z7x_W 102 CGV-----LSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASV--------L 166 (461)
T ss_dssp HHH-----HHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHH--------H
T ss_pred HHH-----HHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHH--------H
Confidence 000 00011134778888888774 43221100 001124567888877763 332111000000 0
Q ss_pred ccccChhHHhh--cc-----cccchHHHhcCCCCCceeccccccCc-----------cccCccceEEEccCCCccccc--
Q 041021 188 QKLKSEENLLV--AN-----QIHLFDEKLSGLHKVQHLWKENAESN-----------KVFANLKSLEIFECSKLQKLV-- 247 (320)
Q Consensus 188 ~~l~~l~~L~~--~~-----~~~~~~~li~~~~~L~~l~~~~~~~~-----------~~~~~L~~L~i~~c~~l~~l~-- 247 (320)
....+++.|.- +. ...+...+....++|+.+.+.++... ..+++|++|+++++ .+++..
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 245 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMA 245 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHH
Confidence 00111111100 00 00000010123446676666554321 24567777777776 333321
Q ss_pred ---C-CccCCCCccEEeecCccccccccCc---chhhhccccCEEeEccc
Q 041021 248 ---P-TSWHLENLATLEVSKCHGLINLLTL---STSESLVNLERMKITDC 290 (320)
Q Consensus 248 ---~-~~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~l~~L~~L~l~~C 290 (320)
. ....+++|++|++++| .+++.... .....+++|++|+++++
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 1 1124677777777776 45552211 12334677777777776
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.10 E-value=5.9e-10 Score=107.08 Aligned_cols=164 Identities=21% Similarity=0.290 Sum_probs=120.2
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
..+++|+.|.+.+| .+..+.. +..+++|++|++++| .++.++. ...+++|+.|+++++ .+..+
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~Ls~N-~l~~~~~-----------l~~l~~L~~L~Ls~N-~l~~l 102 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-----------LTNLKNLGWLFLDEN-KIKDL 102 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCTT---GGGCTTCCEEECTTS-CCCCCGG-----------GGGCTTCCEEECCSS-CCCCC
T ss_pred hcCCCCCEEECcCC-CCCCChH---HccCCCCCEEEeeCC-CCCCChh-----------hccCCCCCEEECcCC-CCCCC
Confidence 45788999999887 4655332 478999999999998 6766643 224689999999988 56655
Q ss_pred cCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccc
Q 041021 144 CNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENA 223 (320)
Q Consensus 144 ~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~ 223 (320)
+ .+..+++|+.|+++++. +..++. +..+++|+.|.++++
T Consensus 103 ~----~l~~l~~L~~L~Ls~N~-l~~l~~------------------------------------l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 103 S----SLKDLKKLKSLSLEHNG-ISDING------------------------------------LVHLPQLESLYLGNN 141 (605)
T ss_dssp T----TSTTCTTCCEEECTTSC-CCCCGG------------------------------------GGGCTTCSEEECCSS
T ss_pred h----hhccCCCCCEEEecCCC-CCCCcc------------------------------------ccCCCccCEEECCCC
Confidence 4 25668999999998874 443321 556777777777665
Q ss_pred cCc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 224 ESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 224 ~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
... ..+++|+.|++++| .++.+++ +..+++|+.|++++| .+++++. ...+++|+.|++++|+
T Consensus 142 ~l~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 142 KITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCCCCGGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCSEE
T ss_pred ccCCchhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC-CCCCChH---HccCCCCCEEEccCCc
Confidence 432 67889999999987 5666655 678899999999986 5777643 4578999999998874
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.09 E-value=1.8e-09 Score=92.10 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=106.6
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++++.|+++++. +..+.. .....+++|++|+++++ .+....+. .+..+++|++|+++++ .++.++.
T Consensus 35 ~~l~~L~L~~n~-l~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~------- 100 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSD---ATFRGLTKLTWLNLDYN-QLQTLSAG-VFDDLTELGTLGLANN-QLASLPL------- 100 (251)
T ss_dssp TTCCEEECTTSC-CCCCCT---TTTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCT-------
T ss_pred CCCCEEEccCCC-cCccCH---hHhcCcccCCEEECCCC-cCCccCHh-HhccCCcCCEEECCCC-cccccCh-------
Confidence 579999998765 444222 23567899999999996 67665544 3578999999999999 6777654
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhh
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLV 198 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 198 (320)
.....+++|++|+++++ ++..++... +..+++|++|+++++ .++.++...
T Consensus 101 --~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~------------------------ 150 (251)
T 3m19_A 101 --GVFDHLTQLDKLYLGGN-QLKSLPSGV--FDRLTKLKELRLNTN-QLQSIPAGA------------------------ 150 (251)
T ss_dssp --TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCCCCTTT------------------------
T ss_pred --hHhcccCCCCEEEcCCC-cCCCcChhH--hccCCcccEEECcCC-cCCccCHHH------------------------
Confidence 11224589999999998 777666532 456899999999886 455443210
Q ss_pred cccccchHHHhcCCCCCceeccccccCccccCccceEEEccCCCcccccC-CccCCCCccEEeecCcc
Q 041021 199 ANQIHLFDEKLSGLHKVQHLWKENAESNKVFANLKSLEIFECSKLQKLVP-TSWHLENLATLEVSKCH 265 (320)
Q Consensus 199 ~~~~~~~~~li~~~~~L~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 265 (320)
+. .+++|+.|++.++ .++.+++ .+..+++|++|++++++
T Consensus 151 ----------~~-----------------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 151 ----------FD-----------------KLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ----------TT-----------------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ----------cC-----------------cCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 22 3345556666654 4455544 44677889999998864
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.08 E-value=1e-09 Score=90.16 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=79.0
Q ss_pred eccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccc
Q 041021 36 IGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEEL 115 (320)
Q Consensus 36 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 115 (320)
..+++|+.|+++++. +..+. ....+++|++|++.+| .+... + .+..+++|++|++++| .++....
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-----~l~~l~~L~~L~l~~n-~~~~~-~--~l~~l~~L~~L~l~~n-~l~~~~~---- 105 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-----GIEYAHNIKDLTINNI-HATNY-N--PISGLSNLERLRIMGK-DVTSDKI---- 105 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-----TGGGCTTCSEEEEESC-CCSCC-G--GGTTCTTCCEEEEECT-TCBGGGS----
T ss_pred hhcCCccEEeccCCC-ccChH-----HHhcCCCCCEEEccCC-CCCcc-h--hhhcCCCCCEEEeECC-ccCcccC----
Confidence 367899999998754 44422 2467899999999998 55553 2 3578999999999998 5654221
Q ss_pred ccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCcc
Q 041021 116 SADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETF 170 (320)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~ 170 (320)
.. ...+++|++|+++++ .+....+. .+..+++|++|++++|..++.+
T Consensus 106 ----~~-l~~l~~L~~L~Ls~n-~i~~~~~~--~l~~l~~L~~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 106 ----PN-LSGLTSLTLLDISHS-AHDDSILT--KINTLPKVNSIDLSYNGAITDI 152 (197)
T ss_dssp ----CC-CTTCTTCCEEECCSS-BCBGGGHH--HHTTCSSCCEEECCSCTBCCCC
T ss_pred ----hh-hcCCCCCCEEEecCC-ccCcHhHH--HHhhCCCCCEEEccCCCCcccc
Confidence 11 224599999999998 44432221 3567999999999998645544
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.04 E-value=8.5e-10 Score=91.34 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=72.0
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
.++|++|+++++. +..+.. .....+++|++|++.++ .+..+. ...+..+++|++|+++++ .++.++.
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~------ 93 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPN---GVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLPN------ 93 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCT---TTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT------
T ss_pred CCCCcEEEcCCCc-cCcCCh---hhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccCH------
Confidence 3578888887754 443222 12456788888888875 566533 333467888888888888 6666543
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCcc
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETF 170 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~ 170 (320)
.....+++|++|+++++ ++..++... +..+++|++|+++++ .++.+
T Consensus 94 ---~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~N-~l~~~ 139 (208)
T 2o6s_A 94 ---GVFDKLTQLKELALNTN-QLQSLPDGV--FDKLTQLKDLRLYQN-QLKSV 139 (208)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCC
T ss_pred ---hHhcCccCCCEEEcCCC-cCcccCHhH--hccCCcCCEEECCCC-cccee
Confidence 11123578888888877 566555432 456788888888776 34433
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=6.1e-11 Score=107.79 Aligned_cols=230 Identities=17% Similarity=0.122 Sum_probs=131.0
Q ss_pred eccccccEEeecCCccchhhhc-CCCCCCccCCCccEEeeccC--cCccccCchhH------HhhcccCCeEEEccCccc
Q 041021 36 IGFRDIKYLQLSHFPRLQEIWH-GQALPVSFFNNLAQLVVDDC--TNMSSAIPANL------LWCLNNLAWLEVRNCDSL 106 (320)
Q Consensus 36 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~L~~L~l~~c--~~l~~~~~~~~------~~~l~~L~~L~i~~c~~l 106 (320)
..+++|++|+++++. +..... .-......+++|++|++++| ..+....|..+ +..+++|++|++++| .+
T Consensus 29 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF 106 (386)
T ss_dssp HHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred hcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence 357899999999874 333110 00012346899999999987 34443344333 257899999999998 45
Q ss_pred ce-----eccccccccccCCCCCcCCccCeEeecCCcccccccCCC--ccccCC---------CCccEEeeecCCCCCcc
Q 041021 107 EE-----VLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFT--GNIIEL---------PKLEYLIIENCPDMETF 170 (320)
Q Consensus 107 ~~-----i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~l---------~~L~~l~l~~c~~l~~~ 170 (320)
+. ++. ....+++|++|++++|. +....... ..+..+ ++|++|++++|. +...
T Consensus 107 ~~~~~~~l~~----------~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~ 174 (386)
T 2ca6_A 107 GPTAQEPLID----------FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENG 174 (386)
T ss_dssp CTTTHHHHHH----------HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGG
T ss_pred CHHHHHHHHH----------HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcH
Confidence 44 211 11235899999999984 43221110 011123 899999999875 3311
Q ss_pred ccCccccccccccccccccccChhHHh--hcccc------cchHHHhcCCCCCceeccccccCc-----------cccCc
Q 041021 171 TSNSTFVLYMTTDNKEAQKLKSEENLL--VANQI------HLFDEKLSGLHKVQHLWKENAESN-----------KVFAN 231 (320)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~l~~L~--~~~~~------~~~~~li~~~~~L~~l~~~~~~~~-----------~~~~~ 231 (320)
....+... .....+++.|. .+... .+|.. +..+++|+.+.+.++... ..+++
T Consensus 175 ~~~~l~~~--------l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 175 SMKEWAKT--------FQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp GHHHHHHH--------HHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred HHHHHHHH--------HHhCCCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 11100000 01111222211 01110 01101 667788888887765441 46678
Q ss_pred cceEEEccCCCcccc-----cCCc--cCCCCccEEeecCcccccc-----ccCcchhhhccccCEEeEcccc
Q 041021 232 LKSLEIFECSKLQKL-----VPTS--WHLENLATLEVSKCHGLIN-----LLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 232 L~~L~i~~c~~l~~l-----~~~~--~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
|+.|++++|. ++.. +..+ ..+++|++|++++|. ++. ++. .+..++++|++|++++|+
T Consensus 246 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 246 LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-HHHHHCTTCCEEECTTSB
T ss_pred cCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-HHHhcCCCceEEEccCCc
Confidence 8888888874 4432 2222 237888899988864 554 433 233457888999888874
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.02 E-value=1.1e-08 Score=98.41 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=27.5
Q ss_pred ccCccceEEEccCCCccccc-CCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccc
Q 041021 228 VFANLKSLEIFECSKLQKLV-PTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 228 ~~~~L~~L~i~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
.+++|+.|++++| +++.++ ..+..+++|++|+++++ +++.++... ...+++|++|+++++
T Consensus 492 ~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 492 ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN 552 (635)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCEEECTTS
T ss_pred hccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCEEECCCC
Confidence 3445555555554 333332 22344555555555553 344443322 234455555555544
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.98 E-value=2.8e-10 Score=102.58 Aligned_cols=36 Identities=17% Similarity=-0.021 Sum_probs=20.5
Q ss_pred cCccceEEEccCCCcccccC-----CccCCCCccEEeecCcc
Q 041021 229 FANLKSLEIFECSKLQKLVP-----TSWHLENLATLEVSKCH 265 (320)
Q Consensus 229 ~~~L~~L~i~~c~~l~~l~~-----~~~~~~~L~~L~l~~c~ 265 (320)
.++|+.|+++++ .++..+. ....+++|++|++++|.
T Consensus 224 ~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 224 PNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 346777777765 3443321 22455667777777654
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=1.3e-09 Score=93.91 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=105.5
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+.+++.+.+.+.. +.++. ....+++|++|++.+| .+..+. .+..+++|++|++++| .++.++.
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~-----~~~~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i~~~~~----- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLV-----SQKELSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QISDLSP----- 80 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEE-----CHHHHTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGG-----
T ss_pred HHHHHHHHHhcCCC-ccccc-----chhhcCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-ccCCChh-----
Confidence 45566677776533 33321 2356789999999997 566643 2478999999999998 7777643
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
...+++|++|+++++ ++..++... . ++|++|+++++ .++.++.
T Consensus 81 ------l~~l~~L~~L~L~~N-~l~~l~~~~----~-~~L~~L~L~~N-~l~~~~~------------------------ 123 (263)
T 1xeu_A 81 ------LKDLTKLEELSVNRN-RLKNLNGIP----S-ACLSRLFLDNN-ELRDTDS------------------------ 123 (263)
T ss_dssp ------GTTCSSCCEEECCSS-CCSCCTTCC----C-SSCCEEECCSS-CCSBSGG------------------------
T ss_pred ------hccCCCCCEEECCCC-ccCCcCccc----c-CcccEEEccCC-ccCCChh------------------------
Confidence 224589999999988 666665433 2 88999999887 3443321
Q ss_pred hhcccccchHHHhcCCCCCceeccccccCc-----cccCccceEEEccCCCcccccCCccCCCCccEEeecCc
Q 041021 197 LVANQIHLFDEKLSGLHKVQHLWKENAESN-----KVFANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKC 264 (320)
Q Consensus 197 ~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c 264 (320)
+..+++|+.+.++++... ..+++|+.|+++++ .++.+ ..+..+++|+.|+++++
T Consensus 124 ------------l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 124 ------------LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ------------GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEE
T ss_pred ------------hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCC
Confidence 555666776666554322 45666777777665 44444 34456667777777664
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.96 E-value=2.1e-10 Score=103.47 Aligned_cols=211 Identities=14% Similarity=0.014 Sum_probs=123.5
Q ss_pred cccccEEeecCCccchhhhcCC-CCCCccCC-CccEEeeccCcCccccCchhHHhhc-----ccCCeEEEccCcccceec
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQ-ALPVSFFN-NLAQLVVDDCTNMSSAIPANLLWCL-----NNLAWLEVRNCDSLEEVL 110 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~i~~c~~l~~i~ 110 (320)
.++|++|+++++. +....... ......++ +|++|++++| .++...+..+ ..+ ++|++|++++| .++..+
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n-~l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDEL-VQILAAIPANVTSLNLSGN-FLSYKS 96 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHH-HHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHH-HHHHhccCCCccEEECcCC-cCChHH
Confidence 3459999998776 44421100 00123456 8999999987 5666544443 333 88999999998 465432
Q ss_pred cccccccccCCCCCcC-CccCeEeecCCcccccccCCCc--cccC-CCCccEEeeecCCCCCccccCccccccccccccc
Q 041021 111 HLEELSADKEHIGPLF-PKLSELRLIDLPKLKRFCNFTG--NIIE-LPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKE 186 (320)
Q Consensus 111 ~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~--~~~~-l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~ 186 (320)
.... ......+ ++|++|+++++. +........ .+.. .++|++|++++|. ++......
T Consensus 97 ~~~l-----~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~------------ 157 (362)
T 3goz_A 97 SDEL-----VKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE------------ 157 (362)
T ss_dssp HHHH-----HHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH------------
T ss_pred HHHH-----HHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH------------
Confidence 2100 0001112 689999999884 544332110 0122 2588999988863 33221110
Q ss_pred cccccChhHHhhcccccchHHHhcCCC-CCceeccccccCc-----------ccc-CccceEEEccCCCccc-----ccC
Q 041021 187 AQKLKSEENLLVANQIHLFDEKLSGLH-KVQHLWKENAESN-----------KVF-ANLKSLEIFECSKLQK-----LVP 248 (320)
Q Consensus 187 ~~~l~~l~~L~~~~~~~~~~~li~~~~-~L~~l~~~~~~~~-----------~~~-~~L~~L~i~~c~~l~~-----l~~ 248 (320)
++.. +...+ +|+.+.+.++... ... ++|+.|+++++ .++. ++.
T Consensus 158 -----------------l~~~-l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~ 218 (362)
T 3goz_A 158 -----------------LIQI-LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAY 218 (362)
T ss_dssp -----------------HHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHH
T ss_pred -----------------HHHH-HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHH
Confidence 0001 34444 7777777665432 223 58999999987 4555 333
Q ss_pred CccC-CCCccEEeecCccccccccCc---chhhhccccCEEeEcccc
Q 041021 249 TSWH-LENLATLEVSKCHGLINLLTL---STSESLVNLERMKITDCK 291 (320)
Q Consensus 249 ~~~~-~~~L~~L~l~~c~~l~~l~~~---~~~~~l~~L~~L~l~~C~ 291 (320)
.+.. .++|++|+++++ .+++.+.. .+...+++|++|++++|.
T Consensus 219 ~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 3333 469999999996 57665442 233567899999999985
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.90 E-value=2.1e-08 Score=84.29 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=92.7
Q ss_pred cccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccccc
Q 041021 40 DIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADK 119 (320)
Q Consensus 40 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 119 (320)
.-+.++.++ .++..++. ...++|++|+++++ .+....+.. +..+++|++|+++++ .++.++.
T Consensus 20 s~~~v~c~~-~~l~~ip~------~~~~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~i~~-------- 81 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASVPA------GIPTNAQILYLHDN-QITKLEPGV-FDSLINLKELYLGSN-QLGALPV-------- 81 (229)
T ss_dssp ETTEEECTT-SCCSSCCS------CCCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCT--------
T ss_pred eCCEeEccC-CCcCccCC------CCCCCCCEEEcCCC-ccCccCHHH-hhCccCCcEEECCCC-CCCCcCh--------
Confidence 355666653 23444322 22478888888886 566644443 477888888888888 5666543
Q ss_pred CCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhc
Q 041021 120 EHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVA 199 (320)
Q Consensus 120 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~ 199 (320)
.....+++|+.|+++++ ++..++... +..+++|++|+++++ +++.+|..
T Consensus 82 -~~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~-------------------------- 130 (229)
T 3e6j_A 82 -GVFDSLTQLTVLDLGTN-QLTVLPSAV--FDRLVHLKELFMCCN-KLTELPRG-------------------------- 130 (229)
T ss_dssp -TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCSCCTT--------------------------
T ss_pred -hhcccCCCcCEEECCCC-cCCccChhH--hCcchhhCeEeccCC-cccccCcc--------------------------
Confidence 11123578888888887 666665432 456788888888775 34433321
Q ss_pred ccccchHHHhcCCCCCceeccccccCccccCccceEEEccCCCcccccC-CccCCCCccEEeecCcc
Q 041021 200 NQIHLFDEKLSGLHKVQHLWKENAESNKVFANLKSLEIFECSKLQKLVP-TSWHLENLATLEVSKCH 265 (320)
Q Consensus 200 ~~~~~~~~li~~~~~L~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 265 (320)
+ ..+++|+.|++.++ .++.++. .+..+++|+.|++++.+
T Consensus 131 ---------~-----------------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 131 ---------I-----------------ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ---------G-----------------GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ---------c-----------------ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 2 23345666666664 5555554 34678899999998865
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.89 E-value=2.7e-08 Score=94.72 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=100.1
Q ss_pred cccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccccc
Q 041021 40 DIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADK 119 (320)
Q Consensus 40 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 119 (320)
+|+.|+++++. +..++. ..+++|++|+++++ .+.. +| ..+++|++|++++| .++.++.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~------~l~~~L~~L~Ls~N-~l~~-ip----~~l~~L~~L~Ls~N-~l~~ip~-------- 117 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPD------NLPPQITVLEITQN-ALIS-LP----ELPASLEYLDACDN-RLSTLPE-------- 117 (571)
T ss_dssp TCSEEECCSSC-CSCCCS------CCCTTCSEEECCSS-CCSC-CC----CCCTTCCEEECCSS-CCSCCCC--------
T ss_pred CccEEEeCCCC-CCccCH------hHcCCCCEEECcCC-CCcc-cc----cccCCCCEEEccCC-CCCCcch--------
Confidence 78888887654 444222 12477888888876 4554 33 34678888888887 6666533
Q ss_pred CCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhc
Q 041021 120 EHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVA 199 (320)
Q Consensus 120 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~ 199 (320)
...+|++|+++++ ++..++. .+++|+.|+++++. ++.++.
T Consensus 118 -----l~~~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N~-l~~lp~--------------------------- 157 (571)
T 3cvr_A 118 -----LPASLKHLDVDNN-QLTMLPE------LPALLEYINADNNQ-LTMLPE--------------------------- 157 (571)
T ss_dssp -----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-CSCCCC---------------------------
T ss_pred -----hhcCCCEEECCCC-cCCCCCC------cCccccEEeCCCCc-cCcCCC---------------------------
Confidence 1137888888876 5555543 36778888887753 444432
Q ss_pred ccccchHHHhcCCCCCceeccccccCc---cccCccceEEEccCCCcccccCCccCCCCc-------cEEeecCcccccc
Q 041021 200 NQIHLFDEKLSGLHKVQHLWKENAESN---KVFANLKSLEIFECSKLQKLVPTSWHLENL-------ATLEVSKCHGLIN 269 (320)
Q Consensus 200 ~~~~~~~~li~~~~~L~~l~~~~~~~~---~~~~~L~~L~i~~c~~l~~l~~~~~~~~~L-------~~L~l~~c~~l~~ 269 (320)
.+++|+.+.+.++... ...++|+.|+++++ .++.++. +. .+| +.|+++++ .|+.
T Consensus 158 -----------~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N-~L~~lp~-~~--~~L~~~~~~L~~L~Ls~N-~l~~ 221 (571)
T 3cvr_A 158 -----------LPTSLEVLSVRNNQLTFLPELPESLEALDVSTN-LLESLPA-VP--VRNHHSEETEIFFRCREN-RITH 221 (571)
T ss_dssp -----------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCC
T ss_pred -----------cCCCcCEEECCCCCCCCcchhhCCCCEEECcCC-CCCchhh-HH--HhhhcccccceEEecCCC-ccee
Confidence 1223444444332211 11156777777765 5566655 22 255 77777774 5666
Q ss_pred ccCcchhhhccccCEEeEcccc
Q 041021 270 LLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 270 l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
+|.. + ..+++|+.|++++++
T Consensus 222 lp~~-l-~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 222 IPEN-I-LSLDPTCTIILEDNP 241 (571)
T ss_dssp CCGG-G-GGSCTTEEEECCSSS
T ss_pred cCHH-H-hcCCCCCEEEeeCCc
Confidence 6552 2 346777777777764
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.88 E-value=8.5e-09 Score=85.23 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=62.7
Q ss_pred cCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccccc
Q 041021 65 FFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFC 144 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 144 (320)
..++|++|+++++ .+....+ ..+..+++|++|+++++ .++.++. .....+++|++|+++++ ++..++
T Consensus 26 ~~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~---------~~~~~l~~L~~L~Ls~n-~l~~~~ 92 (208)
T 2o6s_A 26 IPAQTTYLDLETN-SLKSLPN-GVFDELTSLTQLYLGGN-KLQSLPN---------GVFNKLTSLTYLNLSTN-QLQSLP 92 (208)
T ss_dssp CCTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCT---------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCCCcEEEcCCC-ccCcCCh-hhhcccccCcEEECCCC-ccCccCh---------hhcCCCCCcCEEECCCC-cCCccC
Confidence 3568999999986 5666443 34578899999999988 6776643 11224589999999987 566665
Q ss_pred CCCccccCCCCccEEeeecCCCCCcc
Q 041021 145 NFTGNIIELPKLEYLIIENCPDMETF 170 (320)
Q Consensus 145 ~~~~~~~~l~~L~~l~l~~c~~l~~~ 170 (320)
... +..+++|++|+++++ .++.+
T Consensus 93 ~~~--~~~l~~L~~L~L~~N-~l~~~ 115 (208)
T 2o6s_A 93 NGV--FDKLTQLKELALNTN-QLQSL 115 (208)
T ss_dssp TTT--TTTCTTCCEEECCSS-CCCCC
T ss_pred HhH--hcCccCCCEEEcCCC-cCccc
Confidence 432 456888999998876 34433
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=2.3e-08 Score=86.00 Aligned_cols=140 Identities=23% Similarity=0.249 Sum_probs=103.0
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELS 116 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 116 (320)
.+++|+.|+++++. +..+. ....+++|+.|+++++ .+....+ +..+++|++|++++| .++.++.
T Consensus 39 ~l~~L~~L~l~~n~-i~~l~-----~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l~~----- 102 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSLA-----GMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNLNG----- 102 (263)
T ss_dssp HHTTCSEEECTTSC-CCCCT-----TGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCCTT-----
T ss_pred hcCcCcEEECcCCC-cccch-----HHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCcCc-----
Confidence 57899999998873 55432 2456899999999987 5766444 578999999999998 7777643
Q ss_pred cccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHH
Q 041021 117 ADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENL 196 (320)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 196 (320)
.. . ++|+.|+++++ ++..++ .+..+++|+.|+++++. ++.++.
T Consensus 103 -----~~-~-~~L~~L~L~~N-~l~~~~----~l~~l~~L~~L~Ls~N~-i~~~~~------------------------ 145 (263)
T 1xeu_A 103 -----IP-S-ACLSRLFLDNN-ELRDTD----SLIHLKNLEILSIRNNK-LKSIVM------------------------ 145 (263)
T ss_dssp -----CC-C-SSCCEEECCSS-CCSBSG----GGTTCTTCCEEECTTSC-CCBCGG------------------------
T ss_pred -----cc-c-CcccEEEccCC-ccCCCh----hhcCcccccEEECCCCc-CCCChH------------------------
Confidence 11 2 89999999988 666654 35678999999998863 544421
Q ss_pred hhcccccchHHHhcCCCCCceeccccccCc-----cccCccceEEEccCC
Q 041021 197 LVANQIHLFDEKLSGLHKVQHLWKENAESN-----KVFANLKSLEIFECS 241 (320)
Q Consensus 197 ~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~ 241 (320)
+..+++|+.+.+.++... ..+++|+.|++++++
T Consensus 146 ------------l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 146 ------------LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ------------GGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred ------------HccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence 556777888877765432 677889999999864
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.86 E-value=2.4e-08 Score=95.06 Aligned_cols=157 Identities=17% Similarity=0.098 Sum_probs=107.4
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
+++|+.|+++++. +..++ ..+++|+.|+++++ .+.. +|. + .. +|++|++++| .++.++.
T Consensus 79 ~~~L~~L~Ls~N~-l~~ip-------~~l~~L~~L~Ls~N-~l~~-ip~-l-~~--~L~~L~Ls~N-~l~~lp~------ 137 (571)
T 3cvr_A 79 PPQITVLEITQNA-LISLP-------ELPASLEYLDACDN-RLST-LPE-L-PA--SLKHLDVDNN-QLTMLPE------ 137 (571)
T ss_dssp CTTCSEEECCSSC-CSCCC-------CCCTTCCEEECCSS-CCSC-CCC-C-CT--TCCEEECCSS-CCSCCCC------
T ss_pred cCCCCEEECcCCC-Ccccc-------cccCCCCEEEccCC-CCCC-cch-h-hc--CCCEEECCCC-cCCCCCC------
Confidence 4789999998764 54432 34789999999997 6766 443 3 22 9999999998 6776533
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL 197 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 197 (320)
.+++|+.|+++++ ++..++. .+++|++|+++++. ++.+|. +
T Consensus 138 -------~l~~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N~-L~~lp~--l---------------------- 178 (571)
T 3cvr_A 138 -------LPALLEYINADNN-QLTMLPE------LPTSLEVLSVRNNQ-LTFLPE--L---------------------- 178 (571)
T ss_dssp -------CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-CSCCCC--C----------------------
T ss_pred -------cCccccEEeCCCC-ccCcCCC------cCCCcCEEECCCCC-CCCcch--h----------------------
Confidence 3589999999988 5665553 37899999998874 555543 1
Q ss_pred hcccccchHHHhcCCCCCceeccccccCc---cccCcc-------ceEEEccCCCcccccCCccCCCCccEEeecCcccc
Q 041021 198 VANQIHLFDEKLSGLHKVQHLWKENAESN---KVFANL-------KSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGL 267 (320)
Q Consensus 198 ~~~~~~~~~~li~~~~~L~~l~~~~~~~~---~~~~~L-------~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l 267 (320)
.++|+.+.+.++... ....+| +.|+++++ .++.+|..+..+++|+.|++++++--
T Consensus 179 --------------~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 179 --------------PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp --------------CTTCCEEECCSSCCSSCCCCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred --------------hCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCC
Confidence 023444444333221 111155 99999986 78888887778999999999997643
Q ss_pred cc
Q 041021 268 IN 269 (320)
Q Consensus 268 ~~ 269 (320)
..
T Consensus 244 ~~ 245 (571)
T 3cvr_A 244 SR 245 (571)
T ss_dssp HH
T ss_pred Cc
Confidence 33
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.82 E-value=4.1e-08 Score=88.35 Aligned_cols=85 Identities=24% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCCccEEeeccCcCccccCchhHHh-hcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccccc
Q 041021 66 FNNLAQLVVDDCTNMSSAIPANLLW-CLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFC 144 (320)
Q Consensus 66 ~~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 144 (320)
.+.++.|+++++ .+..+.+.. +. .+++|++|+++++ .++.++.. . ...+++|++|+++++ ++..++
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~-~~~~l~~L~~L~L~~N-~i~~i~~~--------~-~~~l~~L~~L~Ls~N-~l~~~~ 104 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEW-TPTRLTNLHSLLLSHN-HLNFISSE--------A-FVPVPNLRYLDLSSN-HLHTLD 104 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTS-SSSCCTTCCEEECCSS-CCCEECTT--------T-TTTCTTCCEEECCSS-CCCEEC
T ss_pred CCCCCEEECCCC-CCCccChhh-hhhcccccCEEECCCC-cCCccChh--------h-ccCCCCCCEEECCCC-cCCcCC
Confidence 356788888875 566644433 34 7788888888887 67776541 1 123478888888876 566665
Q ss_pred CCCccccCCCCccEEeeecCC
Q 041021 145 NFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 145 ~~~~~~~~l~~L~~l~l~~c~ 165 (320)
... +..+++|+.|+++++.
T Consensus 105 ~~~--~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 105 EFL--FSDLQALEVLLLYNNH 123 (361)
T ss_dssp TTT--TTTCTTCCEEECCSSC
T ss_pred HHH--hCCCcCCCEEECCCCc
Confidence 432 4567788888887753
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.80 E-value=1.9e-08 Score=80.19 Aligned_cols=130 Identities=20% Similarity=0.276 Sum_probs=89.0
Q ss_pred CCceEeecCCCCce--EeeccccchhhhhhcccccceeccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCc
Q 041021 1 SLVNLKVSGCPKLE--EIVGHVGQEVKENRIAFSKLKIGFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCT 78 (320)
Q Consensus 1 ~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 78 (320)
+|++|++++|. ++ .+. .....+++|+.|+++++. +..+ . ....+++|++|++++|
T Consensus 25 ~L~~L~l~~n~-l~~~~i~---------------~~~~~l~~L~~L~l~~n~-l~~~--~---~~~~l~~L~~L~Ls~N- 81 (168)
T 2ell_A 25 AVRELVLDNCK-SNDGKIE---------------GLTAEFVNLEFLSLINVG-LISV--S---NLPKLPKLKKLELSEN- 81 (168)
T ss_dssp SCSEEECCSCB-CBTTBCS---------------SCCGGGGGCCEEEEESSC-CCCC--S---SCCCCSSCCEEEEESC-
T ss_pred cCCEEECCCCC-CChhhHH---------------HHHHhCCCCCEEeCcCCC-CCCh--h---hhccCCCCCEEECcCC-
Confidence 47788888874 33 331 012347899999998876 5553 1 3466899999999987
Q ss_pred CccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccC--CCccccCCCCc
Q 041021 79 NMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCN--FTGNIIELPKL 156 (320)
Q Consensus 79 ~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~l~~L 156 (320)
.+...++. .+..+++|++|++++| .++.++... ....+++|++|+++++ .+..++. .. .+..+++|
T Consensus 82 ~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~--------~l~~l~~L~~L~l~~N-~l~~~~~~~~~-~~~~l~~L 149 (168)
T 2ell_A 82 RIFGGLDM-LAEKLPNLTHLNLSGN-KLKDISTLE--------PLKKLECLKSLDLFNC-EVTNLNDYRES-VFKLLPQL 149 (168)
T ss_dssp CCCSCCCH-HHHHCTTCCEEECBSS-SCCSSGGGG--------GGSSCSCCCEEECCSS-GGGTSTTHHHH-HHTTCSSC
T ss_pred cCchHHHH-HHhhCCCCCEEeccCC-ccCcchhHH--------HHhcCCCCCEEEeeCC-cCcchHHHHHH-HHHhCccC
Confidence 45553443 4567999999999999 777764311 1224589999999988 4555443 01 25568999
Q ss_pred cEEeeecCC
Q 041021 157 EYLIIENCP 165 (320)
Q Consensus 157 ~~l~l~~c~ 165 (320)
+++++++|.
T Consensus 150 ~~L~l~~n~ 158 (168)
T 2ell_A 150 TYLDGYDRE 158 (168)
T ss_dssp CEETTEETT
T ss_pred cEecCCCCC
Confidence 999999885
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.76 E-value=9.6e-08 Score=79.74 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=54.6
Q ss_pred CCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccC
Q 041021 66 FNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCN 145 (320)
Q Consensus 66 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 145 (320)
.+.+++|+++++ .+....+...+..+++|++|+++++ .++.++. .. ...+++|++|+++++ .+..++.
T Consensus 31 ~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~--------~~-~~~l~~L~~L~Ls~N-~l~~~~~ 98 (220)
T 2v70_A 31 PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEE--------GA-FEGASGVNEILLTSN-RLENVQH 98 (220)
T ss_dssp CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECT--------TT-TTTCTTCCEEECCSS-CCCCCCG
T ss_pred CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECH--------HH-hCCCCCCCEEECCCC-ccCccCH
Confidence 346678888775 5666544444577888888888887 6776644 11 223477888888876 4555544
Q ss_pred CCccccCCCCccEEeeecC
Q 041021 146 FTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 146 ~~~~~~~l~~L~~l~l~~c 164 (320)
.. +..+++|++|+++++
T Consensus 99 ~~--~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 99 KM--FKGLESLKTLMLRSN 115 (220)
T ss_dssp GG--GTTCSSCCEEECTTS
T ss_pred hH--hcCCcCCCEEECCCC
Confidence 32 455777788777765
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.76 E-value=3.8e-08 Score=78.38 Aligned_cols=131 Identities=24% Similarity=0.273 Sum_probs=90.1
Q ss_pred hcccCCeEEEccCcccc--eeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCC
Q 041021 91 CLNNLAWLEVRNCDSLE--EVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDME 168 (320)
Q Consensus 91 ~l~~L~~L~i~~c~~l~--~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~ 168 (320)
..++|++|++++| .++ .++. ....+++|+.|+++++. +..+ . .+..+++|++|+++++. +.
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~----------~~~~l~~L~~L~l~~n~-l~~~---~-~~~~l~~L~~L~Ls~N~-l~ 84 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEG----------LTAEFVNLEFLSLINVG-LISV---S-NLPKLPKLKKLELSENR-IF 84 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSS----------CCGGGGGCCEEEEESSC-CCCC---S-SCCCCSSCCEEEEESCC-CC
T ss_pred CcccCCEEECCCC-CCChhhHHH----------HHHhCCCCCEEeCcCCC-CCCh---h-hhccCCCCCEEECcCCc-Cc
Confidence 4588999999998 565 5533 12345899999999884 6665 2 46678999999998874 32
Q ss_pred c-cccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCccccCccceEEEccCCCccccc
Q 041021 169 T-FTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESNKVFANLKSLEIFECSKLQKLV 247 (320)
Q Consensus 169 ~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 247 (320)
. ++.. + ..+++|+.|+++++ .++.++
T Consensus 85 ~~~~~~-----------------------------------~-----------------~~l~~L~~L~Ls~N-~l~~~~ 111 (168)
T 2ell_A 85 GGLDML-----------------------------------A-----------------EKLPNLTHLNLSGN-KLKDIS 111 (168)
T ss_dssp SCCCHH-----------------------------------H-----------------HHCTTCCEEECBSS-SCCSSG
T ss_pred hHHHHH-----------------------------------H-----------------hhCCCCCEEeccCC-ccCcch
Confidence 2 1110 2 23455666666665 556654
Q ss_pred --CCccCCCCccEEeecCccccccccCc--chhhhccccCEEeEccccc
Q 041021 248 --PTSWHLENLATLEVSKCHGLINLLTL--STSESLVNLERMKITDCKM 292 (320)
Q Consensus 248 --~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~l~~L~~L~l~~C~~ 292 (320)
..+..+++|++|+++++ .++.++.. .....+++|++|++.+|+.
T Consensus 112 ~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 112 TLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred hHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 45578899999999996 46676551 2456789999999999853
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.74 E-value=1.3e-07 Score=78.97 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=89.7
Q ss_pred ccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCc
Q 041021 69 LAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTG 148 (320)
Q Consensus 69 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 148 (320)
-+.+++++. .++. +|..+ .+.+++|+++++ .++.++.. .....+++|++|+++++ ++..++...
T Consensus 13 ~~~l~~s~n-~l~~-iP~~~---~~~~~~L~L~~N-~l~~~~~~--------~~~~~l~~L~~L~L~~N-~i~~i~~~~- 76 (220)
T 2v70_A 13 GTTVDCSNQ-KLNK-IPEHI---PQYTAELRLNNN-EFTVLEAT--------GIFKKLPQLRKINFSNN-KITDIEEGA- 76 (220)
T ss_dssp TTEEECCSS-CCSS-CCSCC---CTTCSEEECCSS-CCCEECCC--------CCGGGCTTCCEEECCSS-CCCEECTTT-
T ss_pred CCEeEeCCC-Cccc-CccCC---CCCCCEEEcCCC-cCCccCch--------hhhccCCCCCEEECCCC-cCCEECHHH-
Confidence 357777774 5666 44332 457889999998 78777431 11234689999999987 577666533
Q ss_pred cccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCc--
Q 041021 149 NIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN-- 226 (320)
Q Consensus 149 ~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-- 226 (320)
+..+++|++|+++++. ++.++.. . +.++++|+.+.+.++...
T Consensus 77 -~~~l~~L~~L~Ls~N~-l~~~~~~---------------------------------~-~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 77 -FEGASGVNEILLTSNR-LENVQHK---------------------------------M-FKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp -TTTCTTCCEEECCSSC-CCCCCGG---------------------------------G-GTTCSSCCEEECTTSCCCCB
T ss_pred -hCCCCCCCEEECCCCc-cCccCHh---------------------------------H-hcCCcCCCEEECCCCcCCeE
Confidence 5678999999998864 4444321 0 555666666666554321
Q ss_pred -----cccCccceEEEccCCCcccc-cCCccCCCCccEEeecCcc
Q 041021 227 -----KVFANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCH 265 (320)
Q Consensus 227 -----~~~~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~ 265 (320)
..+++|+.|+++++ .++.+ +..+..+++|++|++++++
T Consensus 121 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 121 GNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 34566666666664 44444 3344556666666666644
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.73 E-value=4.4e-08 Score=76.37 Aligned_cols=128 Identities=22% Similarity=0.255 Sum_probs=80.1
Q ss_pred hcccCCeEEEccCcccc--eeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCC
Q 041021 91 CLNNLAWLEVRNCDSLE--EVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDME 168 (320)
Q Consensus 91 ~l~~L~~L~i~~c~~l~--~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~ 168 (320)
..++|++|++++| .++ .++. ....+++|+.|+++++ .+..+ . .+..+++|++++++++. ++
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~----------~~~~l~~L~~L~l~~n-~l~~~---~-~~~~l~~L~~L~Ls~n~-i~ 77 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEG----------LTDEFEELEFLSTINV-GLTSI---A-NLPKLNKLKKLELSDNR-VS 77 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCS----------CCTTCTTCCEEECTTS-CCCCC---T-TCCCCTTCCEEECCSSC-CC
T ss_pred CCccCeEEEccCC-cCChhHHHH----------HHhhcCCCcEEECcCC-CCCCc---h-hhhcCCCCCEEECCCCc-cc
Confidence 4578888888888 555 4432 1224578888888877 55555 2 35667888888887764 22
Q ss_pred c-cccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCccccCccceEEEccCCCccccc
Q 041021 169 T-FTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESNKVFANLKSLEIFECSKLQKLV 247 (320)
Q Consensus 169 ~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 247 (320)
. ++.. + ..+++|+.|+++++ .++.++
T Consensus 78 ~~~~~~-----------------------------------~-----------------~~l~~L~~L~ls~N-~i~~~~ 104 (149)
T 2je0_A 78 GGLEVL-----------------------------------A-----------------EKCPNLTHLNLSGN-KIKDLS 104 (149)
T ss_dssp SCTHHH-----------------------------------H-----------------HHCTTCCEEECTTS-CCCSHH
T ss_pred chHHHH-----------------------------------h-----------------hhCCCCCEEECCCC-cCCChH
Confidence 2 1100 2 22445666666665 345443
Q ss_pred --CCccCCCCccEEeecCccccccccCc--chhhhccccCEEeEcc
Q 041021 248 --PTSWHLENLATLEVSKCHGLINLLTL--STSESLVNLERMKITD 289 (320)
Q Consensus 248 --~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~l~~L~~L~l~~ 289 (320)
..+..+++|++|+++++ .++.++.. .....+++|++|++++
T Consensus 105 ~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 105 TIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 44567888999999886 57776551 2456778888887753
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.73 E-value=1.4e-07 Score=78.64 Aligned_cols=142 Identities=16% Similarity=0.238 Sum_probs=88.4
Q ss_pred cEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCcc
Q 041021 70 AQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGN 149 (320)
Q Consensus 70 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 149 (320)
+.+++.+. .+..+ |..+ .++|++|+++++ .++.++.. ....+++|++|+++++ .+..+.+..
T Consensus 14 ~~v~c~~~-~l~~i-P~~l---~~~l~~L~l~~n-~i~~i~~~---------~~~~l~~L~~L~Ls~N-~i~~~~~~~-- 75 (220)
T 2v9t_B 14 NIVDCRGK-GLTEI-PTNL---PETITEIRLEQN-TIKVIPPG---------AFSPYKKLRRIDLSNN-QISELAPDA-- 75 (220)
T ss_dssp TEEECTTS-CCSSC-CSSC---CTTCCEEECCSS-CCCEECTT---------SSTTCTTCCEEECCSS-CCCEECTTT--
T ss_pred CEEEcCCC-CcCcC-CCcc---CcCCCEEECCCC-cCCCcCHh---------HhhCCCCCCEEECCCC-cCCCcCHHH--
Confidence 55666663 56663 4322 378999999998 78887541 1224589999999988 566664433
Q ss_pred ccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCc---
Q 041021 150 IIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN--- 226 (320)
Q Consensus 150 ~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~--- 226 (320)
+..+++|++|+++++ .++.++... +.++++|+.+.+.++...
T Consensus 76 ~~~l~~L~~L~Ls~N-~l~~l~~~~----------------------------------f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGN-KITELPKSL----------------------------------FEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp TTTCSSCCEEECCSS-CCCCCCTTT----------------------------------TTTCTTCCEEECCSSCCCCCC
T ss_pred hhCCcCCCEEECCCC-cCCccCHhH----------------------------------ccCCCCCCEEECCCCCCCEeC
Confidence 567899999999886 455554320 445666666666544321
Q ss_pred ----cccCccceEEEccCCCcccccC-CccCCCCccEEeecCcc
Q 041021 227 ----KVFANLKSLEIFECSKLQKLVP-TSWHLENLATLEVSKCH 265 (320)
Q Consensus 227 ----~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 265 (320)
..+++|+.|++.++ .++.++. .+..+++|++|++++.+
T Consensus 121 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 34566666666664 3444443 23456666666666643
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.70 E-value=2.4e-07 Score=77.32 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=55.0
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|++|++++.. +..+... .+..+++|++|+++++ .+....+.. +..+++|++|+++++ .++.++.
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~---~~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~------- 97 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPG---AFSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGN-KITELPK------- 97 (220)
T ss_dssp TTCCEEECCSSC-CCEECTT---SSTTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSS-CCCCCCT-------
T ss_pred cCCCEEECCCCc-CCCcCHh---HhhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCC-cCCccCH-------
Confidence 356666665443 3332221 2344566666666664 344433333 355666666666666 5555433
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecC
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c 164 (320)
.....+++|++|+++++ ++..+++.. +..+++|++|+++++
T Consensus 98 --~~f~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 98 --SLFEGLFSLQLLLLNAN-KINCLRVDA--FQDLHNLNLLSLYDN 138 (220)
T ss_dssp --TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS
T ss_pred --hHccCCCCCCEEECCCC-CCCEeCHHH--cCCCCCCCEEECCCC
Confidence 11112366666666665 444443322 344566666666654
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.70 E-value=1.7e-07 Score=78.74 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=83.4
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
.++|+.|+++++. +..+.. .....+++|++|++.++ .+..+. ...+..+++|++|+++++ .++.++.
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~---~~~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~~------ 105 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEP---GVFDSLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTN-QLTVLPS------ 105 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCT---TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT------
T ss_pred CCCCCEEEcCCCc-cCccCH---HHhhCccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCC-cCCccCh------
Confidence 3689999999765 444322 23567899999999997 566644 344588999999999999 7877654
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccc
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFT 171 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~ 171 (320)
.....+++|++|+++++ ++..++. .+..+++|+.|+++++ +++.++
T Consensus 106 ---~~~~~l~~L~~L~Ls~N-~l~~lp~---~~~~l~~L~~L~L~~N-~l~~~~ 151 (229)
T 3e6j_A 106 ---AVFDRLVHLKELFMCCN-KLTELPR---GIERLTHLTHLALDQN-QLKSIP 151 (229)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCSCCT---TGGGCTTCSEEECCSS-CCCCCC
T ss_pred ---hHhCcchhhCeEeccCC-cccccCc---ccccCCCCCEEECCCC-cCCccC
Confidence 11234589999999988 6777765 3577999999999886 455554
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.67 E-value=1.8e-09 Score=103.05 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=32.7
Q ss_pred cCccceEEEccCCCcccccCCccCCCCccEEeecCccccccccCcchhhhccccCEEeEcccc
Q 041021 229 FANLKSLEIFECSKLQKLVPTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCK 291 (320)
Q Consensus 229 ~~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~ 291 (320)
+++|+.|+++++ .++.+| .+..+++|++|+++++ +++.++.......+++|++|++++++
T Consensus 485 l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 485 LRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 344445555543 344444 4556677777777764 45555311123456777777776653
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.64 E-value=9e-08 Score=76.90 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=20.3
Q ss_pred cCCCCccEEeecCccccccccCc--chhhhccccCEEeEcccc
Q 041021 251 WHLENLATLEVSKCHGLINLLTL--STSESLVNLERMKITDCK 291 (320)
Q Consensus 251 ~~~~~L~~L~l~~c~~l~~l~~~--~~~~~l~~L~~L~l~~C~ 291 (320)
..+++|++|++++++ ++.++.. .+...+++|+.|++++++
T Consensus 110 ~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 110 ASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 345555555555543 3444331 123455666666666653
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=1.8e-07 Score=82.99 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=54.8
Q ss_pred CCCCCceeccccccCc-------cccCccceEEEccCCCcccccCC-ccCCCCcc-EEeecCccccccccCcchhhhccc
Q 041021 211 GLHKVQHLWKENAESN-------KVFANLKSLEIFECSKLQKLVPT-SWHLENLA-TLEVSKCHGLINLLTLSTSESLVN 281 (320)
Q Consensus 211 ~~~~L~~l~~~~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~l~~ 281 (320)
.|++|+.+.+.++... ..+++|+.+.+.+. ++.++.. ...+++|+ .+++.+ +++.++..+ ...|++
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a-F~~c~~ 298 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA-FMGCDN 298 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT-TTTCTT
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh-hhCCcc
Confidence 4788888877653221 67888999988873 7777654 47788998 999987 788887754 457888
Q ss_pred cCEEeEcc
Q 041021 282 LERMKITD 289 (320)
Q Consensus 282 L~~L~l~~ 289 (320)
|+.+++.+
T Consensus 299 L~~l~l~~ 306 (329)
T 3sb4_A 299 LRYVLATG 306 (329)
T ss_dssp EEEEEECS
T ss_pred CCEEEeCC
Confidence 99988754
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.57 E-value=1.4e-07 Score=73.53 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=61.4
Q ss_pred ccCCCccEEeeccCcCcc-ccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccc
Q 041021 64 SFFNNLAQLVVDDCTNMS-SAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKR 142 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 142 (320)
...++|+.|++.+|. +. ...+. .+..+++|++|++++| .++.+. ....+++|++|+++++ .+..
T Consensus 14 ~~~~~l~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~-----------~~~~l~~L~~L~Ls~n-~i~~ 78 (149)
T 2je0_A 14 RTPSDVKELVLDNSR-SNEGKLEG-LTDEFEELEFLSTINV-GLTSIA-----------NLPKLNKLKKLELSDN-RVSG 78 (149)
T ss_dssp CCGGGCSEEECTTCB-CBTTBCCS-CCTTCTTCCEEECTTS-CCCCCT-----------TCCCCTTCCEEECCSS-CCCS
T ss_pred CCCccCeEEEccCCc-CChhHHHH-HHhhcCCCcEEECcCC-CCCCch-----------hhhcCCCCCEEECCCC-cccc
Confidence 345899999999984 55 23444 3478999999999999 677651 1224589999999998 4544
Q ss_pred -ccCCCccccCCCCccEEeeecCC
Q 041021 143 -FCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 143 -~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
++. ....+++|++++++++.
T Consensus 79 ~~~~---~~~~l~~L~~L~ls~N~ 99 (149)
T 2je0_A 79 GLEV---LAEKCPNLTHLNLSGNK 99 (149)
T ss_dssp CTHH---HHHHCTTCCEEECTTSC
T ss_pred hHHH---HhhhCCCCCEEECCCCc
Confidence 332 23458999999998874
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.55 E-value=1.3e-07 Score=75.87 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=51.0
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
..+++|+.|++.++ .+..+ +. +....++|++|++++| .++.+.. ...+++|++|+++++ .+..+
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i-~~-~~~~~~~L~~L~Ls~N-~l~~~~~-----------l~~l~~L~~L~Ls~N-~l~~~ 79 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVI-EN-LGATLDQFDAIDFSDN-EIRKLDG-----------FPLLRRLKTLLVNNN-RICRI 79 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSC-CC-GGGGTTCCSEEECCSS-CCCEECC-----------CCCCSSCCEEECCSS-CCCEE
T ss_pred CCcCCceEEEeeCC-CCchh-HH-hhhcCCCCCEEECCCC-CCCcccc-----------cccCCCCCEEECCCC-ccccc
Confidence 34567777777776 45543 22 2233447888888877 6666511 123477888888877 55555
Q ss_pred cCCCccccCCCCccEEeeecCC
Q 041021 144 CNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 144 ~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
+.. ....+++|++|+++++.
T Consensus 80 ~~~--~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 80 GEG--LDQALPDLTELILTNNS 99 (176)
T ss_dssp CSC--HHHHCTTCCEEECCSCC
T ss_pred Ccc--hhhcCCCCCEEECCCCc
Confidence 432 12557788888887763
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.50 E-value=1.1e-06 Score=78.99 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=117.6
Q ss_pred cEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCcc
Q 041021 70 AQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGN 149 (320)
Q Consensus 70 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 149 (320)
+.+++.+. .+.. +|.. -.+.+++|+++++ .++.++. ......+++|++|+++++ ++..++...
T Consensus 21 ~~l~c~~~-~l~~-iP~~---~~~~l~~L~Ls~N-~l~~l~~--------~~~~~~l~~L~~L~L~~N-~i~~i~~~~-- 83 (361)
T 2xot_A 21 NILSCSKQ-QLPN-VPQS---LPSYTALLDLSHN-NLSRLRA--------EWTPTRLTNLHSLLLSHN-HLNFISSEA-- 83 (361)
T ss_dssp TEEECCSS-CCSS-CCSS---CCTTCSEEECCSS-CCCEECT--------TSSSSCCTTCCEEECCSS-CCCEECTTT--
T ss_pred CEEEeCCC-CcCc-cCcc---CCCCCCEEECCCC-CCCccCh--------hhhhhcccccCEEECCCC-cCCccChhh--
Confidence 56777764 5666 4432 2467999999999 7888765 222224689999999988 777776543
Q ss_pred ccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCc---
Q 041021 150 IIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN--- 226 (320)
Q Consensus 150 ~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~--- 226 (320)
+..+++|++|+++++. ++.++... +.++++|+.+.+.++...
T Consensus 84 ~~~l~~L~~L~Ls~N~-l~~~~~~~----------------------------------~~~l~~L~~L~L~~N~i~~~~ 128 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNH-LHTLDEFL----------------------------------FSDLQALEVLLLYNNHIVVVD 128 (361)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTT----------------------------------TTTCTTCCEEECCSSCCCEEC
T ss_pred ccCCCCCCEEECCCCc-CCcCCHHH----------------------------------hCCCcCCCEEECCCCcccEEC
Confidence 5678999999999864 55554320 566778888887765432
Q ss_pred ----cccCccceEEEccCCCcccccCCc----cCCCCccEEeecCccccccccCcchhhhccc--cCEEeEccc
Q 041021 227 ----KVFANLKSLEIFECSKLQKLVPTS----WHLENLATLEVSKCHGLINLLTLSTSESLVN--LERMKITDC 290 (320)
Q Consensus 227 ----~~~~~L~~L~i~~c~~l~~l~~~~----~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~--L~~L~l~~C 290 (320)
..+++|+.|+++++ .++.++... ..+++|+.|++++ ++++.++... ...++. ++.|++.++
T Consensus 129 ~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~-~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 129 RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTD-LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHH-HHHSCHHHHTTEECCSS
T ss_pred HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHH-hhhccHhhcceEEecCC
Confidence 57789999999986 677777654 4689999999998 4688876533 345565 478888874
No 125
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=1.2e-07 Score=75.76 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=60.1
Q ss_pred CCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCC---cCCccCeEeecCCcccccc
Q 041021 67 NNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGP---LFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 67 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~ 143 (320)
.+|++|++++|. +++.....+ ..|++|++|++++|..|++-.- ..... ..++|++|++++|+++.+-
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL--------~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCL--------ERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHH--------HHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHH--------HHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 367888888875 655444433 6788888888888877765321 11111 1246888888888877654
Q ss_pred cCCCccccCCCCccEEeeecCCCCCcc
Q 041021 144 CNFTGNIIELPKLEYLIIENCPDMETF 170 (320)
Q Consensus 144 ~~~~~~~~~l~~L~~l~l~~c~~l~~~ 170 (320)
... .+.++++|++|++++|+.+++.
T Consensus 131 Gl~--~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 131 GII--ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHH--HGGGCTTCCEEEEESCTTCCCH
T ss_pred HHH--HHhcCCCCCEEECCCCCCCCch
Confidence 332 2456888888888888877754
No 126
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=8.3e-08 Score=76.72 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=69.0
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHh---hcccCCeEEEccCcccceecccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLW---CLNNLAWLEVRNCDSLEEVLHLEEL 115 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~i~~c~~l~~i~~~~~~ 115 (320)
.+|++|++++|. +++.-.. ....+++|++|++.+|..+++.....+.. .+++|++|++++|+.|++-.-
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl---- 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI---- 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH----
T ss_pred ceEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH----
Confidence 369999999997 6653222 23578999999999999998865554433 246899999999998987422
Q ss_pred ccccCCCCCcCCccCeEeecCCcccccc
Q 041021 116 SADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
.... .+++|++|++++|+++...
T Consensus 133 ----~~L~-~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 ----IALH-HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ----HHGG-GCTTCCEEEEESCTTCCCH
T ss_pred ----HHHh-cCCCCCEEECCCCCCCCch
Confidence 2222 3599999999999988764
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=1.1e-06 Score=77.93 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=46.2
Q ss_pred ccCccceEEEccCCCcccccCC-ccCCCCccEEeecCccccccccCcchhhhccccC-EEeEcc
Q 041021 228 VFANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKCHGLINLLTLSTSESLVNLE-RMKITD 289 (320)
Q Consensus 228 ~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~-~L~l~~ 289 (320)
.+++|+.+++.++ +++.++.. ...+++|++|++.+ +++.++..+ ...+++|+ .+++.+
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~a-F~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRV-FSNCGRLAGTLELPA 283 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEEEECT
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc--ccceehHHH-hhCChhccEEEEEcc
Confidence 4789999999975 47777764 47899999999987 388887755 45889999 888754
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.40 E-value=2.9e-06 Score=67.92 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=74.8
Q ss_pred ccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCc
Q 041021 69 LAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTG 148 (320)
Q Consensus 69 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 148 (320)
.+.+.+.+. .+..+ |. ...++|++|+++++ .++.++. .....+++|++|+++++ ++..++...
T Consensus 9 ~~~l~~~~~-~l~~~-p~---~~~~~l~~L~l~~n-~l~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~- 71 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSV-PT---GIPSSATRLELESN-KLQSLPH---------GVFDKLTQLTKLSLSQN-QIQSLPDGV- 71 (177)
T ss_dssp TTEEECCSS-CCSSC-CT---TCCTTCSEEECCSS-CCCCCCT---------TTTTTCTTCSEEECCSS-CCCCCCTTT-
T ss_pred CCEEEecCC-CCccC-CC---CCCCCCcEEEeCCC-cccEeCH---------HHhcCcccccEEECCCC-cceEeChhH-
Confidence 456666653 45553 32 23467888888877 5665533 11123477888888776 555555422
Q ss_pred cccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCccc
Q 041021 149 NIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESNKV 228 (320)
Q Consensus 149 ~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~~~ 228 (320)
+..+++|++|+++++. ++.++... + ..
T Consensus 72 -~~~l~~L~~L~l~~N~-l~~~~~~~----------------------------------~-----------------~~ 98 (177)
T 2o6r_A 72 -FDKLTKLTILYLHENK-LQSLPNGV----------------------------------F-----------------DK 98 (177)
T ss_dssp -TTTCTTCCEEECCSSC-CCCCCTTT----------------------------------T-----------------TT
T ss_pred -ccCCCccCEEECCCCC-ccccCHHH----------------------------------h-----------------hC
Confidence 3457777777777652 33332110 1 23
Q ss_pred cCccceEEEccCCCcccccCCc-cCCCCccEEeecCcccc
Q 041021 229 FANLKSLEIFECSKLQKLVPTS-WHLENLATLEVSKCHGL 267 (320)
Q Consensus 229 ~~~L~~L~i~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l 267 (320)
+++|+.|+++++ .++.++... ..+++|++|++++++-.
T Consensus 99 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 99 LTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 455666777665 556666543 56788888888886533
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.34 E-value=2.3e-06 Score=68.50 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=79.2
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
.++|++|+++++. +..+... ....+++|++|++.++ .+...++ ..+..+++|++|+++++ .++.++..
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~----- 94 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHG---VFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-KLQSLPNG----- 94 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTT---TTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-----
T ss_pred CCCCcEEEeCCCc-ccEeCHH---HhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-CccccCHH-----
Confidence 4689999998754 4443221 2456899999999986 5766444 34578999999999998 67776541
Q ss_pred ccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 118 DKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
....+++|++|+++++ .+..++... +..+++|+++++++++
T Consensus 95 ----~~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 95 ----VFDKLTQLKELALDTN-QLKSVPDGI--FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ----TTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSC
T ss_pred ----HhhCCcccCEEECcCC-cceEeCHHH--hcCCcccCEEEecCCC
Confidence 1224589999999988 677776532 4568999999998875
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.34 E-value=2.9e-06 Score=69.06 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=79.7
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|++|++++.. +..+... .....+++|++|+++++ .+....+.. +..+++|++|+++++ .++.++..
T Consensus 29 ~~l~~L~l~~n~-i~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~------ 96 (192)
T 1w8a_A 29 LHTTELLLNDNE-LGRISSD--GLFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-KIKEISNK------ 96 (192)
T ss_dssp TTCSEEECCSCC-CCSBCCS--CSGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-CCCEECSS------
T ss_pred CCCCEEECCCCc-CCccCCc--cccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCC-cCCccCHH------
Confidence 489999998764 5443221 12567899999999986 677755554 478999999999999 78887551
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
. ...+++|++|+++++ ++..+.+.. +..+++|+++++++.+
T Consensus 97 --~-~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 97 --M-FLGLHQLKTLNLYDN-QISCVMPGS--FEHLNSLTSLNLASNP 137 (192)
T ss_dssp --S-STTCTTCCEEECCSS-CCCEECTTS--STTCTTCCEEECTTCC
T ss_pred --H-hcCCCCCCEEECCCC-cCCeeCHHH--hhcCCCCCEEEeCCCC
Confidence 1 223589999999988 666665433 5678999999998864
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.32 E-value=2.9e-05 Score=70.72 Aligned_cols=206 Identities=10% Similarity=0.107 Sum_probs=120.3
Q ss_pred cccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccccc
Q 041021 40 DIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADK 119 (320)
Q Consensus 40 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 119 (320)
+|+++.+.. +++.+... .+.. .+|+.+.+.+ .+..+... .+..|++|+.+++.++ .++.++.
T Consensus 136 ~L~~i~l~~--~i~~I~~~---aF~~-~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~n-~l~~I~~-------- 197 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDM---AFFN-STVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSKT-KITKLPA-------- 197 (401)
T ss_dssp CCSEEECCT--TCCEECTT---TTTT-CCCCEEECCT--TCCEECSS-TTTTCTTCCEEECTTS-CCSEECT--------
T ss_pred CccEEEeCC--CccEECHH---hcCC-CCceEEEeCC--CccEehHH-HhhCcccCCeeecCCC-cceEech--------
Confidence 688888753 24443222 2333 3688888875 56664443 3578889999998876 6777754
Q ss_pred CCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHh-h
Q 041021 120 EHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLL-V 198 (320)
Q Consensus 120 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~ 198 (320)
..+. ..+|+++.+.+ +++.+.... ...+++|+.+.+.. .++.++...+.. .+++.+. .
T Consensus 198 ~aF~--~~~L~~l~lp~--~l~~I~~~a--F~~~~~L~~l~l~~--~l~~I~~~aF~~-------------~~L~~i~lp 256 (401)
T 4fdw_A 198 STFV--YAGIEEVLLPV--TLKEIGSQA--FLKTSQLKTIEIPE--NVSTIGQEAFRE-------------SGITTVKLP 256 (401)
T ss_dssp TTTT--TCCCSEEECCT--TCCEECTTT--TTTCTTCCCEECCT--TCCEECTTTTTT-------------CCCSEEEEE
T ss_pred hhEe--ecccCEEEeCC--chheehhhH--hhCCCCCCEEecCC--CccCcccccccc-------------CCccEEEeC
Confidence 1222 36788888763 455555433 45677788877764 355555443321 1111110 0
Q ss_pred cccccchHHHhcCCCCCceeccccccC----------c--cccCccceEEEccCCCcccccCC-ccCCCCccEEeecCcc
Q 041021 199 ANQIHLFDEKLSGLHKVQHLWKENAES----------N--KVFANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKCH 265 (320)
Q Consensus 199 ~~~~~~~~~li~~~~~L~~l~~~~~~~----------~--~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 265 (320)
+....++...+.+|++|+.+.+.+... . ..+++|+.+.+.. .++.+... ...|++|+.+.+..
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~-- 332 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA-- 332 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--
Confidence 111112111177888888776643210 0 5677788777763 46666543 35678888888854
Q ss_pred ccccccCcchhhhccccCEEeEccc
Q 041021 266 GLINLLTLSTSESLVNLERMKITDC 290 (320)
Q Consensus 266 ~l~~l~~~~~~~~l~~L~~L~l~~C 290 (320)
+++.+...++ ..+ +|+.+++.+.
T Consensus 333 ~l~~I~~~aF-~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 333 NVTQINFSAF-NNT-GIKEVKVEGT 355 (401)
T ss_dssp TCCEECTTSS-SSS-CCCEEEECCS
T ss_pred cccEEcHHhC-CCC-CCCEEEEcCC
Confidence 4777766543 355 8888888765
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.31 E-value=5.6e-06 Score=67.33 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=74.6
Q ss_pred cEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCcc
Q 041021 70 AQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGN 149 (320)
Q Consensus 70 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 149 (320)
+.+++++. .++. +|..+ .++|++|+++++ .++.++.. .....+++|++|+++++ .+..+.+..
T Consensus 11 ~~l~~s~~-~l~~-ip~~~---~~~l~~L~l~~n-~i~~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~-- 73 (192)
T 1w8a_A 11 TTVDCTGR-GLKE-IPRDI---PLHTTELLLNDN-ELGRISSD--------GLFGRLPHLVKLELKRN-QLTGIEPNA-- 73 (192)
T ss_dssp TEEECTTS-CCSS-CCSCC---CTTCSEEECCSC-CCCSBCCS--------CSGGGCTTCCEEECCSS-CCCCBCTTT--
T ss_pred CEEEcCCC-CcCc-CccCC---CCCCCEEECCCC-cCCccCCc--------cccccCCCCCEEECCCC-CCCCcCHhH--
Confidence 66777664 4555 33322 337888888877 66665431 11224578888888876 555554332
Q ss_pred ccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCcccc
Q 041021 150 IIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESNKVF 229 (320)
Q Consensus 150 ~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~~~~ 229 (320)
+..+++|++|+++++. ++.++... + ..+
T Consensus 74 ~~~l~~L~~L~Ls~N~-l~~~~~~~----------------------------------~-----------------~~l 101 (192)
T 1w8a_A 74 FEGASHIQELQLGENK-IKEISNKM----------------------------------F-----------------LGL 101 (192)
T ss_dssp TTTCTTCCEEECCSCC-CCEECSSS----------------------------------S-----------------TTC
T ss_pred cCCcccCCEEECCCCc-CCccCHHH----------------------------------h-----------------cCC
Confidence 4567777888777653 33322110 1 334
Q ss_pred CccceEEEccCCCcccc-cCCccCCCCccEEeecCcccc
Q 041021 230 ANLKSLEIFECSKLQKL-VPTSWHLENLATLEVSKCHGL 267 (320)
Q Consensus 230 ~~L~~L~i~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l 267 (320)
++|+.|+++++ .++.+ +..+..+++|++|++++.+--
T Consensus 102 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 102 HQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 55666666665 34433 445567888888888886533
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=6.1e-05 Score=68.54 Aligned_cols=76 Identities=8% Similarity=0.048 Sum_probs=48.2
Q ss_pred hcCCCCCceeccccccC----c--cccCccceEEEccCCCcccccCC-ccCCCCccEEeecCccccccccCcchhhhc-c
Q 041021 209 LSGLHKVQHLWKENAES----N--KVFANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKCHGLINLLTLSTSESL-V 280 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~----~--~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l-~ 280 (320)
+.+|++|+.+.+...-. . ..+++|+.+.+.. +++.+... ...+ +|+.+++.+. .+..++...+ ..+ .
T Consensus 296 F~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F-~~~~~ 370 (401)
T 4fdw_A 296 LEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVW-YGFPD 370 (401)
T ss_dssp TTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSC-CCSCT
T ss_pred hhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccc-cCCCC
Confidence 77888888877643110 0 6778999999964 47776543 3667 9999999885 4455544332 233 3
Q ss_pred ccCEEeEcc
Q 041021 281 NLERMKITD 289 (320)
Q Consensus 281 ~L~~L~l~~ 289 (320)
+++.|.+-.
T Consensus 371 ~l~~l~vp~ 379 (401)
T 4fdw_A 371 DITVIRVPA 379 (401)
T ss_dssp TCCEEEECG
T ss_pred CccEEEeCH
Confidence 566666543
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.24 E-value=4.5e-06 Score=68.02 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=71.8
Q ss_pred ccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccc
Q 041021 39 RDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSAD 118 (320)
Q Consensus 39 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 118 (320)
++|++|++++.. +..++ .....+++|+.|+++++ .+..+.+.. +..+++|++|+++++ .++.++.
T Consensus 31 ~~l~~L~L~~n~-i~~ip----~~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~------- 95 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVP----KELSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYN-RLRCIPP------- 95 (193)
T ss_dssp TTCCEEECCSSC-CCSCC----GGGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCBCCT-------
T ss_pred CCCCEEECCCCc-CchhH----HHhhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCC-ccCEeCH-------
Confidence 578888887653 44432 12456788888888886 566644433 477888888888888 6777654
Q ss_pred cCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 119 KEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
.. ...+++|+.|+++++ .+..++... +..+++|+.+++++.+
T Consensus 96 -~~-f~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 96 -RT-FDGLKSLRLLSLHGN-DISVVPEGA--FNDLSALSHLAIGANP 137 (193)
T ss_dssp -TT-TTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCCEEECCSSC
T ss_pred -HH-hCCCCCCCEEECCCC-CCCeeChhh--hhcCccccEEEeCCCC
Confidence 11 223588888888887 566665532 4567888888887653
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.23 E-value=9.6e-06 Score=66.03 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=41.3
Q ss_pred CeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccc
Q 041021 96 AWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFT 171 (320)
Q Consensus 96 ~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~ 171 (320)
++++++++ .++.+|. ..+++|++|+++++ .+..++. .+..+++|++|+++++. ++.++
T Consensus 13 ~~l~~~~~-~l~~ip~------------~~~~~l~~L~L~~n-~i~~ip~---~~~~l~~L~~L~Ls~N~-i~~i~ 70 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPK------------GIPRDVTELYLDGN-QFTLVPK---ELSNYKHLTLIDLSNNR-ISTLS 70 (193)
T ss_dssp TEEECTTS-CCSSCCS------------CCCTTCCEEECCSS-CCCSCCG---GGGGCTTCCEEECCSSC-CCCCC
T ss_pred CEEEcCCC-CCCcCCC------------CCCCCCCEEECCCC-cCchhHH---HhhcccCCCEEECCCCc-CCEeC
Confidence 67777776 6766643 23478999999987 6666663 46778999999998863 55443
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.12 E-value=3.8e-06 Score=82.49 Aligned_cols=113 Identities=19% Similarity=0.092 Sum_probs=71.8
Q ss_pred HHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCC
Q 041021 88 LLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDM 167 (320)
Q Consensus 88 ~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l 167 (320)
.+..+++|++|+++++ .+..++.. ...+++|++|+++++ ++..++. .+..+++|+.|+++++. +
T Consensus 219 ~~~~l~~L~~L~Ls~n-~l~~l~~~----------~~~l~~L~~L~Ls~N-~l~~lp~---~~~~l~~L~~L~Ls~N~-l 282 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNL-QIFNISAN----------IFKYDFLTRLYLNGN-SLTELPA---EIKNLSNLRVLDLSHNR-L 282 (727)
T ss_dssp ---CCCCCCEEECTTS-CCSCCCGG----------GGGCCSCSCCBCTTS-CCSCCCG---GGGGGTTCCEEECTTSC-C
T ss_pred hhccCCCCcEEECCCC-CCCCCChh----------hcCCCCCCEEEeeCC-cCcccCh---hhhCCCCCCEEeCcCCc-C
Confidence 3466777888888777 55555431 113477778888776 5555543 34567777777777753 4
Q ss_pred CccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCccccCccceEEEccCCCccccc
Q 041021 168 ETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESNKVFANLKSLEIFECSKLQKLV 247 (320)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 247 (320)
+.+|.. + ..+++|+.|+++++ .++.+|
T Consensus 283 ~~lp~~-----------------------------------~-----------------~~l~~L~~L~L~~N-~l~~lp 309 (727)
T 4b8c_D 283 TSLPAE-----------------------------------L-----------------GSCFQLKYFYFFDN-MVTTLP 309 (727)
T ss_dssp SSCCSS-----------------------------------G-----------------GGGTTCSEEECCSS-CCCCCC
T ss_pred CccChh-----------------------------------h-----------------cCCCCCCEEECCCC-CCCccC
Confidence 433321 2 34456677777776 667888
Q ss_pred CCccCCCCccEEeecCccccccc
Q 041021 248 PTSWHLENLATLEVSKCHGLINL 270 (320)
Q Consensus 248 ~~~~~~~~L~~L~l~~c~~l~~l 270 (320)
..+..+++|++|++++++ ++..
T Consensus 310 ~~~~~l~~L~~L~L~~N~-l~~~ 331 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNP-LEKQ 331 (727)
T ss_dssp SSTTSCTTCCCEECTTSC-CCSH
T ss_pred hhhhcCCCccEEeCCCCc-cCCC
Confidence 778889999999999965 4433
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.09 E-value=3e-07 Score=75.28 Aligned_cols=60 Identities=22% Similarity=0.088 Sum_probs=33.5
Q ss_pred HhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecC
Q 041021 89 LWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENC 164 (320)
Q Consensus 89 ~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c 164 (320)
+..+++|++|++++| .++.++. ...+++|+.|+++++ .+..++. ....+++|++|+++++
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~~-----------~~~l~~L~~L~l~~n-~l~~l~~---~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKISS-----------LSGMENLRILSLGRN-LIKKIEN---LDAVADTLEELWISYN 103 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCCC-----------HHHHTTCCEEEEEEE-EECSCSS---HHHHHHHCSEEEEEEE
T ss_pred HhcCCCCCEEECCCC-CCccccc-----------cccCCCCCEEECCCC-Ccccccc---hhhcCCcCCEEECcCC
Confidence 356677777777766 4554421 112366777777665 4444432 2233466777777665
No 138
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=1.2e-05 Score=72.03 Aligned_cols=86 Identities=20% Similarity=0.153 Sum_probs=43.6
Q ss_pred ccCCCccEEeeccCcC----c--c-ccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecC
Q 041021 64 SFFNNLAQLVVDDCTN----M--S-SAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLID 136 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~----l--~-~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~ 136 (320)
..+++|+.|.|.+... + . ......++..+|+|++|.+.++..+. ++ . ...++|++|.+..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~----------~--~~~~~L~~L~L~~ 202 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IG----------K--KPRPNLKSLEIIS 202 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CC----------S--CBCTTCSEEEEEC
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ec----------c--ccCCCCcEEEEec
Confidence 3567788877754210 0 0 00122345677888888887763221 10 1 1247788888876
Q ss_pred CcccccccCCCccccCCCCccEEeeec
Q 041021 137 LPKLKRFCNFTGNIIELPKLEYLIIEN 163 (320)
Q Consensus 137 c~~l~~~~~~~~~~~~l~~L~~l~l~~ 163 (320)
|. +..-.........+|+|++|+++.
T Consensus 203 ~~-l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 203 GG-LPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp SB-CCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred CC-CChHHHHHHHHccCCCCcEEEEec
Confidence 53 321111000012477888887754
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.03 E-value=2.4e-05 Score=62.24 Aligned_cols=104 Identities=19% Similarity=0.139 Sum_probs=73.5
Q ss_pred cccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccccc
Q 041021 40 DIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADK 119 (320)
Q Consensus 40 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 119 (320)
..+.+++++. +++.++. ...++|++|+++++ .+..+.+.. +..+++|++|+++++ .++.++.
T Consensus 10 ~~~~l~~s~n-~l~~ip~------~~~~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~-------- 71 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPT------GIPTTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNN-QLTVLPA-------- 71 (170)
T ss_dssp ETTEEECTTS-CCSSCCS------CCCTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSS-CCCCCCT--------
T ss_pred CCCEEEeCCC-CcCccCc------cCCCCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCC-CcCccCh--------
Confidence 4567777753 3554332 22478999999986 677755544 478999999999998 7877754
Q ss_pred CCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 120 EHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 120 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
.....+++|++|+++++ ++..++... +..+++|++|++++.+
T Consensus 72 -~~f~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 72 -GVFDKLTQLTQLSLNDN-QLKSIPRGA--FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp -TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSC
T ss_pred -hhccCCCCCCEEECCCC-ccCEeCHHH--hcCCCCCCEEEeCCCC
Confidence 11124589999999987 677776543 5678999999998754
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.01 E-value=7.9e-06 Score=80.19 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=66.2
Q ss_pred CccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCccccc
Q 041021 63 VSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKR 142 (320)
Q Consensus 63 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 142 (320)
...+++|+.|+++++ .+.. ++..+ ..+++|++|++++| .++.+|.. ...+++|+.|+++++ ++..
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~-l~~~~-~~l~~L~~L~Ls~N-~l~~lp~~----------~~~l~~L~~L~Ls~N-~l~~ 284 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFN-ISANI-FKYDFLTRLYLNGN-SLTELPAE----------IKNLSNLRVLDLSHN-RLTS 284 (727)
T ss_dssp --CCCCCCEEECTTS-CCSC-CCGGG-GGCCSCSCCBCTTS-CCSCCCGG----------GGGGTTCCEEECTTS-CCSS
T ss_pred hccCCCCcEEECCCC-CCCC-CChhh-cCCCCCCEEEeeCC-cCcccChh----------hhCCCCCCEEeCcCC-cCCc
Confidence 456789999999987 4555 44444 48999999999999 77766541 124589999999988 5666
Q ss_pred ccCCCccccCCCCccEEeeecCCCCCcccc
Q 041021 143 FCNFTGNIIELPKLEYLIIENCPDMETFTS 172 (320)
Q Consensus 143 ~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~ 172 (320)
++. .+..+++|++|+++++ .++.+|.
T Consensus 285 lp~---~~~~l~~L~~L~L~~N-~l~~lp~ 310 (727)
T 4b8c_D 285 LPA---ELGSCFQLKYFYFFDN-MVTTLPW 310 (727)
T ss_dssp CCS---SGGGGTTCSEEECCSS-CCCCCCS
T ss_pred cCh---hhcCCCCCCEEECCCC-CCCccCh
Confidence 654 4577899999999887 4555543
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=3.6e-05 Score=73.26 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=70.2
Q ss_pred cCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccC
Q 041021 94 NLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSN 173 (320)
Q Consensus 94 ~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~ 173 (320)
.|++|++++| .++.+|. ...+++|+.|+++++ ++..+|. .+..+++|+.|+++++ .++.+| .
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-----------~~~l~~L~~L~Ls~N-~l~~lp~---~~~~l~~L~~L~Ls~N-~l~~lp-~ 503 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-----------LEQLLLVTHLDLSHN-RLRALPP---ALAALRCLEVLQASDN-ALENVD-G 503 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-----------GGGGTTCCEEECCSS-CCCCCCG---GGGGCTTCCEEECCSS-CCCCCG-G
T ss_pred CceEEEecCC-CCCCCcC-----------ccccccCcEeecCcc-cccccch---hhhcCCCCCEEECCCC-CCCCCc-c
Confidence 5777777777 6666532 123467777777776 5555544 3566777777777765 344433 1
Q ss_pred ccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCc--------cccCccceEEEccCCCccc
Q 041021 174 STFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESN--------KVFANLKSLEIFECSKLQK 245 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~--------~~~~~L~~L~i~~c~~l~~ 245 (320)
+..+++|+.+.++++... ..+++|+.|+++++ .++.
T Consensus 504 -----------------------------------l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~ 547 (567)
T 1dce_A 504 -----------------------------------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQ 547 (567)
T ss_dssp -----------------------------------GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGG
T ss_pred -----------------------------------cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCC
Confidence 555666666665543211 46778888888886 4566
Q ss_pred ccCCc----cCCCCccEEee
Q 041021 246 LVPTS----WHLENLATLEV 261 (320)
Q Consensus 246 l~~~~----~~~~~L~~L~l 261 (320)
+++.. ..+|+|+.|++
T Consensus 548 ~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSCTTHHHHHCTTCSEEEC
T ss_pred CccHHHHHHHHCcccCccCC
Confidence 55433 34788888863
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.86 E-value=5.8e-05 Score=60.27 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=71.7
Q ss_pred cEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCC
Q 041021 42 KYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEH 121 (320)
Q Consensus 42 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~ 121 (320)
+.+++++. ++..++. ...++|++|+++++ .+..+.+.. +..+++|++|+++++ .++.++. .
T Consensus 15 ~~l~~~~n-~l~~iP~------~~~~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i~~---------~ 75 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPA------GIPTDKQRLWLNNN-QITKLEPGV-FDHLVNLQQLYFNSN-KLTAIPT---------G 75 (174)
T ss_dssp SEEECCSS-CCSSCCS------CCCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCT---------T
T ss_pred cEEEeCCC-CCCccCC------CcCCCCcEEEeCCC-CccccCHHH-hcCCcCCCEEECCCC-CCCccCh---------h
Confidence 55666543 2444322 22378999999986 577655543 478999999999998 7887754 1
Q ss_pred CCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 122 IGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 122 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
....+++|+.|+++++ ++..++... +..+++|+++++++.+
T Consensus 76 ~~~~l~~L~~L~L~~N-~l~~l~~~~--~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDN-HLKSIPRGA--FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSSC
T ss_pred HhCCcchhhEEECCCC-ccceeCHHH--hccccCCCEEEeCCCC
Confidence 1124589999999987 677776532 5678999999998864
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.81 E-value=0.00011 Score=58.33 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=69.9
Q ss_pred cCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccC
Q 041021 94 NLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSN 173 (320)
Q Consensus 94 ~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~ 173 (320)
..++++++++ .++.+|. ..+++|++|+++++ ++..+++.. +..+++|++|+++++ +++.++..
T Consensus 10 ~~~~l~~s~n-~l~~ip~------------~~~~~l~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~~ 72 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPT------------GIPTTTQVLYLYDN-QITKLEPGV--FDRLTQLTRLDLDNN-QLTVLPAG 72 (170)
T ss_dssp ETTEEECTTS-CCSSCCS------------CCCTTCSEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSS-CCCCCCTT
T ss_pred CCCEEEeCCC-CcCccCc------------cCCCCCcEEEcCCC-cCCccChhh--hcCcccCCEEECCCC-CcCccChh
Confidence 4578888887 6777653 12378999999987 666665433 567888999998876 35444322
Q ss_pred ccccccccccccccccccChhHHhhcccccchHHHhcCCCCCceeccccccCccccCccceEEEccCCCcccccCC-ccC
Q 041021 174 STFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQHLWKENAESNKVFANLKSLEIFECSKLQKLVPT-SWH 252 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-~~~ 252 (320)
. + ..+++|+.|+++++ +++.+++. +..
T Consensus 73 ~----------------------------------f-----------------~~l~~L~~L~L~~N-~l~~~~~~~~~~ 100 (170)
T 3g39_A 73 V----------------------------------F-----------------DKLTQLTQLSLNDN-QLKSIPRGAFDN 100 (170)
T ss_dssp T----------------------------------T-----------------TTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred h----------------------------------c-----------------cCCCCCCEEECCCC-ccCEeCHHHhcC
Confidence 0 1 33456667777765 56666653 578
Q ss_pred CCCccEEeecCcc
Q 041021 253 LENLATLEVSKCH 265 (320)
Q Consensus 253 ~~~L~~L~l~~c~ 265 (320)
+++|++|++++.+
T Consensus 101 l~~L~~L~L~~N~ 113 (170)
T 3g39_A 101 LKSLTHIWLLNNP 113 (170)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 8999999999854
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.81 E-value=1.4e-06 Score=71.30 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=77.3
Q ss_pred cCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccc
Q 041021 125 LFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHL 204 (320)
Q Consensus 125 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~ 204 (320)
.+++|++|+++++ .+..++ .+..+++|++|+++++. ++.++..
T Consensus 46 ~l~~L~~L~ls~n-~l~~l~----~~~~l~~L~~L~l~~n~-l~~l~~~------------------------------- 88 (198)
T 1ds9_A 46 TLKACKHLALSTN-NIEKIS----SLSGMENLRILSLGRNL-IKKIENL------------------------------- 88 (198)
T ss_dssp HTTTCSEEECSEE-EESCCC----CHHHHTTCCEEEEEEEE-ECSCSSH-------------------------------
T ss_pred cCCCCCEEECCCC-CCcccc----ccccCCCCCEEECCCCC-cccccch-------------------------------
Confidence 4589999999987 566654 25668999999998873 4444321
Q ss_pred hHHHhcCCCCCceeccccccCc-----cccCccceEEEccCCCcccccC--CccCCCCccEEeecCccccccccC-----
Q 041021 205 FDEKLSGLHKVQHLWKENAESN-----KVFANLKSLEIFECSKLQKLVP--TSWHLENLATLEVSKCHGLINLLT----- 272 (320)
Q Consensus 205 ~~~li~~~~~L~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~----- 272 (320)
+..+++|+.+.+.++... ..+++|+.|++.++ .++.++. .+..+++|++|++++++--..++.
T Consensus 89 ----~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 89 ----DAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp ----HHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred ----hhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence 334556676666554322 46678888888876 4555433 346788888888888753222221
Q ss_pred ---cchhhhccccCEEe
Q 041021 273 ---LSTSESLVNLERMK 286 (320)
Q Consensus 273 ---~~~~~~l~~L~~L~ 286 (320)
..+...+++|++|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 11245677788776
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.81 E-value=1.8e-06 Score=77.91 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=29.4
Q ss_pred hcCCCCCceeccccccCc-----------cccCccceEEEccCCCccccc-----CCccCCCCccEEeecCccccccc
Q 041021 209 LSGLHKVQHLWKENAESN-----------KVFANLKSLEIFECSKLQKLV-----PTSWHLENLATLEVSKCHGLINL 270 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-----------~~~~~L~~L~i~~c~~l~~l~-----~~~~~~~~L~~L~l~~c~~l~~l 270 (320)
+..+++|+.+.+.++... ...++|+.|++++| .+++.. ..+...++|++|++++++ |++.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence 344555665555544321 23456666666665 333221 112234666666666653 4443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.78 E-value=0.00077 Score=60.93 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=14.8
Q ss_pred CCCCccEEeecCccccccccCcchhhhccccCEEeEcc
Q 041021 252 HLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITD 289 (320)
Q Consensus 252 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 289 (320)
.|.+|+++.+.. .++.+...+ ..+|++|+.+++.+
T Consensus 332 ~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 332 GCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESS
T ss_pred CCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECC
Confidence 444455444432 244443322 22445555554443
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.77 E-value=0.001 Score=60.04 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=30.4
Q ss_pred ccccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEc
Q 041021 37 GFRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVR 101 (320)
Q Consensus 37 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 101 (320)
+|.+|+++.+. ..++.+.. ..+..|++|+.+.+.+ ++..+... .+..+++|+.+.+.
T Consensus 69 ~c~~L~~i~lp--~~i~~I~~---~aF~~c~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 69 GCRKVTEIKIP--STVREIGE---FAFENCSKLEIINIPD--SVKMIGRC-TFSGCYALKSILLP 125 (394)
T ss_dssp TCTTEEEEECC--TTCCEECT---TTTTTCTTCCEECCCT--TCCEECTT-TTTTCTTCCCCCCC
T ss_pred CCCCceEEEeC--CCccCcch---hHhhCCCCCcEEEeCC--CceEccch-hhcccccchhhccc
Confidence 46777777774 23433322 2355677788777754 24332222 23556666665543
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.69 E-value=4.4e-05 Score=68.44 Aligned_cols=183 Identities=17% Similarity=0.124 Sum_probs=97.2
Q ss_pred CCCccEEeeccCcCcc-ccC---c---hhHHhhcccCCeEEEccCcccceeccccccc-cccCCCCCcCCccCeEeecCC
Q 041021 66 FNNLAQLVVDDCTNMS-SAI---P---ANLLWCLNNLAWLEVRNCDSLEEVLHLEELS-ADKEHIGPLFPKLSELRLIDL 137 (320)
Q Consensus 66 ~~~L~~L~l~~c~~l~-~~~---~---~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~-~~~~~~~~~~~~L~~L~l~~c 137 (320)
..+++.|.+..+. .. ... . ..-...+++|+.|.|.+.. .... ...+.. .+.......+|+|++|.++++
T Consensus 106 ~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~-~e~~-~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 106 LPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDID-FEEQ-EISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp GGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCC-TTTC-CGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred chhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcc-hhhc-ccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 4567788877653 22 111 0 1113568999999996541 1100 000000 011122234689999999987
Q ss_pred cccccccCCCccccCCCCccEEeeecCCCCCccccCccccccccccccccccccChhHHhhcccccchHHHhcCCCCCce
Q 041021 138 PKLKRFCNFTGNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSEENLLVANQIHLFDEKLSGLHKVQH 217 (320)
Q Consensus 138 ~~l~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~~~~~~~~~~li~~~~~L~~ 217 (320)
..+. ++. ...++|++|++..|. +..-... .+. ...+++|++
T Consensus 183 ~~l~-l~~-----~~~~~L~~L~L~~~~-l~~~~l~------------------~l~--------------~~~lp~L~~ 223 (362)
T 2ra8_A 183 NNLS-IGK-----KPRPNLKSLEIISGG-LPDSVVE------------------DIL--------------GSDLPNLEK 223 (362)
T ss_dssp BTCB-CCS-----CBCTTCSEEEEECSB-CCHHHHH------------------HHH--------------HSBCTTCCE
T ss_pred CCce-ecc-----ccCCCCcEEEEecCC-CChHHHH------------------HHH--------------HccCCCCcE
Confidence 4432 222 237899999998764 2211100 000 235666666
Q ss_pred ecccc-------cc-C-----c---cccCccceEEEccCCCcccccC---CccCCCCccEEeecCccccccccCcchh--
Q 041021 218 LWKEN-------AE-S-----N---KVFANLKSLEIFECSKLQKLVP---TSWHLENLATLEVSKCHGLINLLTLSTS-- 276 (320)
Q Consensus 218 l~~~~-------~~-~-----~---~~~~~L~~L~i~~c~~l~~l~~---~~~~~~~L~~L~l~~c~~l~~l~~~~~~-- 276 (320)
|.+.. .. . . ..+++|+.|++.+|........ ....++.|++|+++. +.+++....+++
T Consensus 224 L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDH 302 (362)
T ss_dssp EEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTT
T ss_pred EEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhh
Confidence 64420 00 0 0 2467888888887743321111 113578888888876 456664222222
Q ss_pred -hhccccCEEeEcccc
Q 041021 277 -ESLVNLERMKITDCK 291 (320)
Q Consensus 277 -~~l~~L~~L~l~~C~ 291 (320)
..+++|+.|++++|.
T Consensus 303 L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHTTCSEEECCSBB
T ss_pred cccCCcceEEECCCCc
Confidence 457888888888773
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.62 E-value=0.00013 Score=58.26 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=63.2
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccccc
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSA 117 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 117 (320)
.++|+.|++++.. +..+... ....+++|++|+++++ .+..++ ...+..+++|++|+++++ .++.++.
T Consensus 32 ~~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~~------ 98 (174)
T 2r9u_A 32 PTDKQRLWLNNNQ-ITKLEPG---VFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDN-HLKSIPR------ 98 (174)
T ss_dssp CTTCSEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT------
T ss_pred CCCCcEEEeCCCC-ccccCHH---HhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCC-ccceeCH------
Confidence 3789999998765 5543222 3567899999999996 677744 444578999999999998 7887754
Q ss_pred ccCCCCCcCCccCeEeecCCc
Q 041021 118 DKEHIGPLFPKLSELRLIDLP 138 (320)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~c~ 138 (320)
.....+++|+.|++++++
T Consensus 99 ---~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 99 ---GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp ---TTTTTCTTCSEEECCSSC
T ss_pred ---HHhccccCCCEEEeCCCC
Confidence 112245899999999873
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.58 E-value=0.00025 Score=62.81 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=30.7
Q ss_pred cccccEEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCccccee
Q 041021 38 FRDIKYLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEV 109 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i 109 (320)
+++|++|+|++...+..+.... +..+++|+.|+++++ .+...++.. +..+++|++|+++++ .++.+
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~ 95 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-ALESL 95 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CCSCC
T ss_pred CCCeeEEEccCCCCCCCcChhH---hccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCC-cccee
Confidence 3445555555434444432211 334555555555553 344433322 245555555555555 44444
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.37 E-value=0.011 Score=53.29 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=51.8
Q ss_pred hcCCCCCceeccccccCc------cccCccceEEEccCCCcccccCC-ccCCCCccEEeecCccccccccCcchhhhccc
Q 041021 209 LSGLHKVQHLWKENAESN------KVFANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKCHGLINLLTLSTSESLVN 281 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~------~~~~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 281 (320)
+.+|.+|+.+.+.+.... ..++.|+.+.+. ..++.++.. ...|.+|+.+++.. +++.+...+ ...|.+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a-F~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDA-FAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTT
T ss_pred eeecccccEEecccccceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhH-hhCCCC
Confidence 778888888766432111 567888888876 356666653 36789999999964 577776654 447788
Q ss_pred cCEEeE
Q 041021 282 LERMKI 287 (320)
Q Consensus 282 L~~L~l 287 (320)
|+.+.|
T Consensus 336 L~~i~i 341 (394)
T 4gt6_A 336 LERIAI 341 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888877
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.36 E-value=0.0032 Score=56.83 Aligned_cols=76 Identities=9% Similarity=0.148 Sum_probs=43.8
Q ss_pred hcCCCCCceeccccccC----c--cccCccceEEEccCCCcccccC-CccCCCCccEEeecCccccccccCcchhhhccc
Q 041021 209 LSGLHKVQHLWKENAES----N--KVFANLKSLEIFECSKLQKLVP-TSWHLENLATLEVSKCHGLINLLTLSTSESLVN 281 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~----~--~~~~~L~~L~i~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 281 (320)
+.+|.+|+.+.+.+.-. . ..+++|+.+.+.. .++.+.. ....|.+|+.+.+.. .++.+...+ ...|++
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~ 367 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANA-FQGCIN 367 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTT-BTTCTT
T ss_pred ccccccccccccccccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHH-hhCCCC
Confidence 55666666655432100 0 4566777776643 3555543 235677788877753 366665544 346677
Q ss_pred cCEEeEcc
Q 041021 282 LERMKITD 289 (320)
Q Consensus 282 L~~L~l~~ 289 (320)
|+.+++..
T Consensus 368 L~~i~lp~ 375 (394)
T 4fs7_A 368 LKKVELPK 375 (394)
T ss_dssp CCEEEEEG
T ss_pred CCEEEECC
Confidence 77777643
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.35 E-value=0.00035 Score=61.90 Aligned_cols=103 Identities=22% Similarity=0.219 Sum_probs=72.3
Q ss_pred EEeecCCccchhhhcCCCCCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceeccccccccccCCC
Q 041021 43 YLQLSHFPRLQEIWHGQALPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHI 122 (320)
Q Consensus 43 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~ 122 (320)
.++..+..++..++. ...+++|+.|+++++..+..+++.. +..+++|++|+++++ .++.+++..
T Consensus 12 ~v~~~~~n~l~~ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~--------- 75 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-----LPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPDA--------- 75 (347)
T ss_dssp CEECCSSCCCTTTTT-----SCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTTG---------
T ss_pred EEEcCCCCCCCccCC-----CCCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-ccceeCHHH---------
Confidence 345554435555432 3557889999998755788865544 588999999999999 788886521
Q ss_pred CCcCCccCeEeecCCcccccccCCCccccCCCCccEEeeecCC
Q 041021 123 GPLFPKLSELRLIDLPKLKRFCNFTGNIIELPKLEYLIIENCP 165 (320)
Q Consensus 123 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~L~~l~l~~c~ 165 (320)
...+++|+.|+|+++ ++..++... ...+ +|+.|++.+.+
T Consensus 76 ~~~l~~L~~L~l~~N-~l~~~~~~~--~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFN-ALESLSWKT--VQGL-SLQELVLSGNP 114 (347)
T ss_dssp GGSCSCCCEEECCSS-CCSCCCSTT--TCSC-CCCEEECCSSC
T ss_pred hcCCcCCCEEeCCCC-ccceeCHHH--cccC-CceEEEeeCCC
Confidence 124589999999987 777777643 2233 39999997754
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.35 E-value=2.4e-05 Score=70.45 Aligned_cols=168 Identities=14% Similarity=0.061 Sum_probs=95.1
Q ss_pred cccccEEeecCCccchh-hhcCCC-CCCccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEccCcccceecccccc
Q 041021 38 FRDIKYLQLSHFPRLQE-IWHGQA-LPVSFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRNCDSLEEVLHLEEL 115 (320)
Q Consensus 38 ~~~L~~L~l~~~~~l~~-~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 115 (320)
.++|++|+++++. +.. .+..-. .-....++|++|++++| .++......+...+++|++|++++| .+++.......
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 4678899998766 332 111000 00123468999999987 4554344445567788999999988 56543210000
Q ss_pred ccccCCCCCcCCccCeEeecCCcccccccCCC--ccccCCCCccEEeeecCCCCCccccCccccccccccccccccccCh
Q 041021 116 SADKEHIGPLFPKLSELRLIDLPKLKRFCNFT--GNIIELPKLEYLIIENCPDMETFTSNSTFVLYMTTDNKEAQKLKSE 193 (320)
Q Consensus 116 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~l~~L~~l~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 193 (320)
.......++|++|++++| .+....... ..+...++|++|+++++. +......
T Consensus 148 ----~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~-------------------- 201 (372)
T 3un9_A 148 ----DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLE-------------------- 201 (372)
T ss_dssp ----HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHH--------------------
T ss_pred ----HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHH--------------------
Confidence 000012368999999988 443321100 012457889999988874 3321110
Q ss_pred hHHhhcccccchHHHhcCCCCCceeccccccCc-----------cccCccceEEEccCCCccc
Q 041021 194 ENLLVANQIHLFDEKLSGLHKVQHLWKENAESN-----------KVFANLKSLEIFECSKLQK 245 (320)
Q Consensus 194 ~~L~~~~~~~~~~~li~~~~~L~~l~~~~~~~~-----------~~~~~L~~L~i~~c~~l~~ 245 (320)
.++.. +..+++|+.+.+.++... ...++|++|++++++ +++
T Consensus 202 ---------~L~~~-L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 202 ---------LLAAQ-LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp ---------HHHHH-GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred ---------HHHHH-HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence 00001 556677888888776542 245789999999874 443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.26 E-value=0.0041 Score=49.84 Aligned_cols=82 Identities=22% Similarity=0.146 Sum_probs=50.0
Q ss_pred hcCCCCCceeccccccCc-----------cccCccceEEEccCCCccc-----ccCCccCCCCccEEeec-Ccccccccc
Q 041021 209 LSGLHKVQHLWKENAESN-----------KVFANLKSLEIFECSKLQK-----LVPTSWHLENLATLEVS-KCHGLINLL 271 (320)
Q Consensus 209 i~~~~~L~~l~~~~~~~~-----------~~~~~L~~L~i~~c~~l~~-----l~~~~~~~~~L~~L~l~-~c~~l~~l~ 271 (320)
+..++.|+.+.+.++... ...+.|++|+++++ .+++ +...+...+.|++|+++ ..+.+++-.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 455666777766655432 34467888888876 4443 22334566789999994 234566543
Q ss_pred Ccch---hhhccccCEEeEcccc
Q 041021 272 TLST---SESLVNLERMKITDCK 291 (320)
Q Consensus 272 ~~~~---~~~l~~L~~L~l~~C~ 291 (320)
...+ ....++|++|++++|.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCcCEEeccCCC
Confidence 2222 2344789999998873
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.37 E-value=0.0046 Score=52.71 Aligned_cols=88 Identities=22% Similarity=0.188 Sum_probs=49.1
Q ss_pred cccCccceEEEccCCCccccc---CCccCCCCccEEeecCccccccccCcchhhhccccCEEeEccccccceeecccccc
Q 041021 227 KVFANLKSLEIFECSKLQKLV---PTSWHLENLATLEVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGE 303 (320)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~~~~ 303 (320)
..+++|+.|+++++ +++.+. .....+++|+.|++++ ++++.+....-...+ +|++|++.+++=-..+ ....+-
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~-~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNSLCDTF-RDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTSTTGGGC-SSHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCcCcccc-CcchhH
Confidence 34667777777775 455443 3335688899999987 456665332222233 8888888887622111 000000
Q ss_pred cccceeEecccceee
Q 041021 304 EAEDCIVFRKLECLG 318 (320)
Q Consensus 304 ~~~~~~~~~~L~~L~ 318 (320)
.......||+|+.|+
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 002234678888775
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.73 E-value=0.035 Score=47.19 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=46.5
Q ss_pred cCCCccEEeeccCcCccccCc-hhHHhhcccCCeEEEccCcccceeccccccccccCCCCCcCCccCeEeecCCcccccc
Q 041021 65 FFNNLAQLVVDDCTNMSSAIP-ANLLWCLNNLAWLEVRNCDSLEEVLHLEELSADKEHIGPLFPKLSELRLIDLPKLKRF 143 (320)
Q Consensus 65 ~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 143 (320)
.+++|+.|++++. .+..+.+ ...+..+++|+.|+++++ .++.+...+.+ ..+ +|++|.+++++--..+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l--------~~l-~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI--------KGL-KLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGG--------TTS-CCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhc--------ccC-CcceEEccCCcCcccc
Confidence 4678888888775 4555322 123467788888888777 56654221111 112 7788888777533222
Q ss_pred cCCC----ccccCCCCccEEe
Q 041021 144 CNFT----GNIIELPKLEYLI 160 (320)
Q Consensus 144 ~~~~----~~~~~l~~L~~l~ 160 (320)
+... ..+..+|+|+.|+
T Consensus 237 ~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEES
T ss_pred CcchhHHHHHHHHCcccCeEC
Confidence 2100 0133466666664
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.73 E-value=0.74 Score=40.68 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=18.1
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEcc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVRN 102 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 102 (320)
..+.+|+.+.+.. .+..... ..+..+..|+.+.+..
T Consensus 214 ~~~~~l~~i~~~~--~~~~i~~-~~f~~~~~L~~i~lp~ 249 (379)
T 4h09_A 214 SYGKNLKKITITS--GVTTLGD-GAFYGMKALDEIAIPK 249 (379)
T ss_dssp TTCSSCSEEECCT--TCCEECT-TTTTTCSSCCEEEECT
T ss_pred ccccccceeeecc--ceeEEcc-ccccCCccceEEEcCC
Confidence 3455666666543 2333222 2235566666666654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.31 E-value=0.53 Score=41.64 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=16.4
Q ss_pred ccCCCccEEeeccCcCccccCchhHHhhcccCCeEEEc
Q 041021 64 SFFNNLAQLVVDDCTNMSSAIPANLLWCLNNLAWLEVR 101 (320)
Q Consensus 64 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 101 (320)
..+.+|+.+.+.. .+..+.. ..+..+.+|+.+.+.
T Consensus 237 ~~~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 237 YGMKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFY 271 (379)
T ss_dssp TTCSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEEC
T ss_pred cCCccceEEEcCC--CccEeCc-cccceeehhcccccc
Confidence 4455666666543 2333222 123455555555553
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=89.80 E-value=0.22 Score=39.48 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=53.4
Q ss_pred hcCCCCCceeccccc-cCc-----------cccCccceEEEccCCCccc-----ccCCccCCCCccEEeecCcccccccc
Q 041021 209 LSGLHKVQHLWKENA-ESN-----------KVFANLKSLEIFECSKLQK-----LVPTSWHLENLATLEVSKCHGLINLL 271 (320)
Q Consensus 209 i~~~~~L~~l~~~~~-~~~-----------~~~~~L~~L~i~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~l~ 271 (320)
+..++.|+.+.+.++ ... ...++|++|++++|. +++ +...+...+.|++|++++| .|++-.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 777889999988876 442 456789999999984 443 2222345688999999996 466543
Q ss_pred Ccch---hhhccccCEEeEc
Q 041021 272 TLST---SESLVNLERMKIT 288 (320)
Q Consensus 272 ~~~~---~~~l~~L~~L~l~ 288 (320)
...+ ....++|++|+++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~ 129 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRID 129 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECC
T ss_pred HHHHHHHHHhCCCceEEEec
Confidence 2222 2344689999994
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.49 E-value=1.6 Score=32.33 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=17.4
Q ss_pred CccceEEEccCCCcccccCC-ccCCCCccEEeecCc
Q 041021 230 ANLKSLEIFECSKLQKLVPT-SWHLENLATLEVSKC 264 (320)
Q Consensus 230 ~~L~~L~i~~c~~l~~l~~~-~~~~~~L~~L~l~~c 264 (320)
++|+.|++++. .++.++.. +..+++|+.|++.+.
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 34556666553 45555433 244555666665553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=69.63 E-value=3.9 Score=30.11 Aligned_cols=14 Identities=14% Similarity=-0.094 Sum_probs=6.2
Q ss_pred hhcccCCeEEEccC
Q 041021 90 WCLNNLAWLEVRNC 103 (320)
Q Consensus 90 ~~l~~L~~L~i~~c 103 (320)
..+++|++|++.++
T Consensus 52 ~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 52 DALPALRTAHLGAN 65 (130)
T ss_dssp GGCTTCCEEECCSS
T ss_pred hhccccCEEEecCC
Confidence 44444444444443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=32.86 E-value=22 Score=28.30 Aligned_cols=81 Identities=10% Similarity=0.001 Sum_probs=52.1
Q ss_pred hcCCCCCceeccccc-cCc-----------cccCccceEEEccCCCcccccC-----CccCCCCccEEeecCcccccccc
Q 041021 209 LSGLHKVQHLWKENA-ESN-----------KVFANLKSLEIFECSKLQKLVP-----TSWHLENLATLEVSKCHGLINLL 271 (320)
Q Consensus 209 i~~~~~L~~l~~~~~-~~~-----------~~~~~L~~L~i~~c~~l~~l~~-----~~~~~~~L~~L~l~~c~~l~~l~ 271 (320)
+..-+.|+++.+.+. ... ..-+.|+.|++++| .+++-.. .+..-+.|++|+++++ .|++-.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 556677888888653 321 34568999999987 4443221 1234478999999984 466554
Q ss_pred Ccchhhhc---cccCEEeEcccc
Q 041021 272 TLSTSESL---VNLERMKITDCK 291 (320)
Q Consensus 272 ~~~~~~~l---~~L~~L~l~~C~ 291 (320)
..+++..+ +.|++|+++++.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHHhhCCceeEEECCCCc
Confidence 43333332 569999998763
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.92 E-value=71 Score=21.98 Aligned_cols=10 Identities=20% Similarity=0.013 Sum_probs=4.1
Q ss_pred hcccCCeEEE
Q 041021 91 CLNNLAWLEV 100 (320)
Q Consensus 91 ~l~~L~~L~i 100 (320)
.|.+|+.+.+
T Consensus 41 ~C~~L~~i~~ 50 (100)
T 2lz0_A 41 GCTALEKLIL 50 (100)
T ss_dssp TCTTCCCEEE
T ss_pred ccCCccEEEE
Confidence 3444444443
Done!