Your job contains 1 sequence.
>041023
MDTNTNKYLLALVVFSLHSLQIQWSLVVAMEEAHQEEALISHLLQDLFVNEKAGDESESE
SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF
FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL
HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELY
EVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN
EKR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041023
(303 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504955425 - symbol:RTL1 "RNAse II-like 1" spec... 624 5.5e-61 1
TAIR|locus:2092409 - symbol:RTL2 "RNAse THREE-like protei... 481 7.9e-46 1
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 471 3.4e-43 1
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 377 1.2e-34 2
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 323 4.7e-30 2
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 329 3.8e-28 1
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 325 9.8e-28 1
TIGR_CMR|CHY_1444 - symbol:CHY_1444 "ribonuclease III" sp... 172 7.9e-24 2
FB|FBgn0039016 - symbol:Dcr-1 "Dicer-1" species:7227 "Dro... 272 6.2e-22 1
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 228 4.4e-19 2
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 232 5.0e-19 1
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 171 1.7e-18 2
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 233 2.3e-18 1
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 237 2.7e-18 1
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 235 4.4e-18 1
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 235 4.4e-18 1
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 233 7.2e-18 1
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 233 7.2e-18 1
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 231 1.2e-17 1
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 229 1.9e-17 1
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 227 3.1e-17 1
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 227 3.1e-17 1
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 227 3.2e-17 1
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 223 8.2e-17 1
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 214 7.1e-15 2
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 160 2.9e-14 2
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 147 4.6e-14 3
TIGR_CMR|APH_1149 - symbol:APH_1149 "ribonuclease III" sp... 163 1.5e-13 2
TIGR_CMR|CBU_1503 - symbol:CBU_1503 "ribonuclease III" sp... 164 1.6e-13 2
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 117 6.5e-12 2
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 169 1.4e-11 1
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 133 6.0e-11 2
TIGR_CMR|ECH_1054 - symbol:ECH_1054 "ribonuclease III" sp... 152 1.2e-10 2
UNIPROTKB|F1M2R2 - symbol:F1M2R2 "Uncharacterized protein... 138 2.1e-09 2
RGD|1307626 - symbol:Drosha "drosha, ribonuclease type II... 138 2.2e-09 2
UNIPROTKB|F1PJL5 - symbol:DROSHA "Uncharacterized protein... 147 3.5e-09 2
UNIPROTKB|Q9KPB2 - symbol:rnc "Ribonuclease 3" species:24... 121 9.7e-09 2
TIGR_CMR|VC_2461 - symbol:VC_2461 "ribonuclease III" spec... 121 9.7e-09 2
TIGR_CMR|SO_1348 - symbol:SO_1348 "ribonuclease III" spec... 130 1.1e-08 2
UNIPROTKB|F1LQY5 - symbol:F1LQY5 "Uncharacterized protein... 147 1.2e-08 2
MGI|MGI:1261425 - symbol:Drosha "drosha, ribonuclease typ... 147 2.5e-08 2
UNIPROTKB|E9PTR3 - symbol:E9PTR3 "Uncharacterized protein... 147 2.5e-08 2
UNIPROTKB|Q9NRR4 - symbol:DROSHA "Ribonuclease 3" species... 147 2.5e-08 2
TIGR_CMR|GSU_2228 - symbol:GSU_2228 "ribonuclease III" sp... 130 3.7e-08 2
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 146 3.8e-08 2
UNIPROTKB|F1SP38 - symbol:DROSHA "Uncharacterized protein... 144 5.1e-08 2
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 143 5.1e-08 1
UNIPROTKB|E1BGY0 - symbol:DROSHA "Uncharacterized protein... 144 5.4e-08 2
UNIPROTKB|F1NQC9 - symbol:DROSHA "Uncharacterized protein... 141 1.1e-07 2
ZFIN|ZDB-GENE-070209-23 - symbol:rnasen "ribonuclease typ... 136 3.1e-07 2
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 115 4.2e-07 2
UNIPROTKB|Q61XX9 - symbol:drsh-1 "Ribonuclease 3" species... 132 5.6e-07 2
TIGR_CMR|CPS_4122 - symbol:CPS_4122 "ribonuclease III" sp... 134 1.4e-06 1
UNIPROTKB|P66666 - symbol:rnc "Ribonuclease 3" species:17... 132 1.7e-06 1
FB|FBgn0026722 - symbol:drosha "drosha" species:7227 "Dro... 138 6.9e-06 1
POMBASE|SPBC119.11c - symbol:pac1 "double-strand-specific... 127 1.9e-05 1
SGD|S000004852 - symbol:RNT1 "Nuclear dsRNA-specific ribo... 128 2.3e-05 1
WB|WBGene00009163 - symbol:drsh-1 species:6239 "Caenorhab... 121 4.1e-05 2
UNIPROTKB|O01326 - symbol:drsh-1 "Ribonuclease 3" species... 121 4.1e-05 2
UNIPROTKB|A7TR32 - symbol:Kpol_455p11 "Putative uncharact... 119 0.00030 1
ASPGD|ASPL0000015309 - symbol:AN11224 species:162425 "Eme... 115 0.00042 1
CGD|CAL0001312 - symbol:DCR1 species:5476 "Candida albica... 118 0.00045 1
UNIPROTKB|Q5A694 - symbol:RNT1 "Probable ribonuclease III... 118 0.00045 1
>TAIR|locus:504955425 [details] [associations]
symbol:RTL1 "RNAse II-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004525
"ribonuclease III activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142
SMART:SM00535 EMBL:CP002687 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 IPI:IPI00537607
RefSeq:NP_680697.4 UniGene:At.45352 ProteinModelPortal:F4JK37
SMR:F4JK37 PRIDE:F4JK37 EnsemblPlants:AT4G15417.1 GeneID:827212
KEGG:ath:AT4G15417 OMA:HRFLRHK PhylomeDB:F4JK37 Uniprot:F4JK37
Length = 264
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 129/253 (50%), Positives = 175/253 (69%)
Query: 50 NEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGD 108
N K ++ + L +L E+IL Y+F +K+LL +AFTD S ++ SYE LE +GD
Sbjct: 14 NTKTIGSADPDQLMEIESL--EKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGD 71
Query: 109 SVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI 168
S+LN+ + + LYP PG LT+LR+ NV+TEKLARVA+ L+ YLRH KPLLEEQI
Sbjct: 72 SILNMGIIYDFIKLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQI 131
Query: 169 REFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
EF EA+ YPLHSNGL+ PKVLADIVESTIGA+F+DCNS+ + VWKV K LL+P+I
Sbjct: 132 LEFVEAMEKYPLHSNGLLKVPKVLADIVESTIGAIFMDCNST-ETVWKVIKPLLEPIIHL 190
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
+ +K+HP+TEL E+CQK LK+ D W+E+ + IED+ +G G + KKE A N AA
Sbjct: 191 DKMKSHPMTELNEMCQKRNLKLTSKDTWEENQTYCFHIEDKFVGCGHHPVKKETARNFAA 250
Query: 289 KDALNNIERLLNE 301
K+A++N + +
Sbjct: 251 KNAIDNFAKFFGD 263
>TAIR|locus:2092409 [details] [associations]
symbol:RTL2 "RNAse THREE-like protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 EMBL:AB024036 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 HSSP:O67082
EMBL:AY042815 EMBL:AY081681 IPI:IPI00517285 RefSeq:NP_566661.1
UniGene:At.8183 ProteinModelPortal:Q9LTQ0 SMR:Q9LTQ0 IntAct:Q9LTQ0
EnsemblPlants:AT3G20420.1 GeneID:821587 KEGG:ath:AT3G20420
TAIR:At3g20420 HOGENOM:HOG000237951 InParanoid:Q9LTQ0 OMA:ANISTEK
PhylomeDB:Q9LTQ0 ProtClustDB:CLSN2688595 Genevestigator:Q9LTQ0
Uniprot:Q9LTQ0
Length = 391
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 101/235 (42%), Positives = 157/235 (66%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y+F+NK+LL+EA T SC + F SYERLE++GDS + L ++ + YP+L P
Sbjct: 64 EKILNYKFSNKSLLKEAITHTSCTD-FPSYERLEFIGDSAIGLAISNYLYLTYPSLEPHD 122
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---DYPLHSNGLVD 187
L+ LR+ANV+TEKLARV++ GL+ +LR N P L+E+++EFSEA+ D + GLV
Sbjct: 123 LSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGLVK 182
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP--VTELYEVCQK 245
APKVLAD+ ES GAV++D N + +W +F+ LL+P+++ + L+ P V+ L+++C K
Sbjct: 183 APKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHK 242
Query: 246 NKLKVKFVDLWKESTAFH--IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+K ++ + WK+ I+++D+LL G A K+IA AAK+AL + +
Sbjct: 243 HKKRIDIKN-WKDGNVSIAVIYLDDELLASGR-AENKDIARLIAAKEALRKLSEV 295
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 471 (170.9 bits), Expect = 3.4e-43, P = 3.4e-43
Identities = 114/243 (46%), Positives = 148/243 (60%)
Query: 60 ESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
ES+ + N D + +LG F NK LL EA T S P S Y+RLE+VGD+VL+ L+T+
Sbjct: 1530 ESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITR 1589
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----SE 173
FF Y +LPPG LT LR+A VN E ARVA+K LH +LRH LE QIREF E
Sbjct: 1590 HLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQE 1649
Query: 174 AILDYPLHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
+L +S GL D APKVL DIVES GA+F+D +VWKVF+ LL PM++PETL
Sbjct: 1650 ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETL 1709
Query: 232 KTHPVTELYEVCQKNK--LKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
HPV EL E CQ+ L+ K +T +F++ +G A P+K++A AA+
Sbjct: 1710 PMHPVRELQERCQQQAEGLEYKASRAGNIATV-EVFVDGVQIGV-AQNPQKKMAQKLAAR 1767
Query: 290 DAL 292
+AL
Sbjct: 1768 NAL 1770
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 377 (137.8 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 94/250 (37%), Positives = 140/250 (56%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E L N + E +L Y F +K+LL EA T S PE Y+RLE++GDSVL+ L+
Sbjct: 1142 QAEKLVNVGYM--ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLI 1199
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL----RHNKPLLEEQIREF 171
TK + YP L PG LT +RSA+VN E A VA+K LHK++ H + + EF
Sbjct: 1200 TKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEF 1259
Query: 172 SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
++ L + PKVL D++ES GA+F+D + ++V+ K LL MI+PET+
Sbjct: 1260 EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETV 1319
Query: 232 KTHPVTELYEVCQKNKLKV-KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
K HPV EL E+CQK + ++ K D +S + ++ A A K++A A K+
Sbjct: 1320 KLHPVRELTELCQKWQFELSKAKDF--DSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1377
Query: 291 ALNNIERLLN 300
LN ++ L+
Sbjct: 1378 VLNLLKNSLD 1387
Score = 41 (19.5 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 32 EAHQEEALISHLLQDLFVNEKAGDESE 58
+ H+ AL HL+ D+ V E + E
Sbjct: 624 QLHKVGALSDHLVPDMVVAETVSQKLE 650
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 323 (118.8 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 71/167 (42%), Positives = 101/167 (60%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NK LL+EA T S P ++RLE+ GDS+L + T YPNL
Sbjct: 8 EKILNYSFVNKTLLKEAITQKS-P----LFDRLEFFGDSILEVAFTNYICHTYPNLKVKE 62
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--DYPLHSNGLVDA 188
L LR+ANV+ EK AR+A+ LH +L P L ++++ F+EA+ D P+ GLV A
Sbjct: 63 LRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYGGLVKA 122
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP 235
PK+LAD +ES VFID N + +W++F+ LL+P+ +P+ L P
Sbjct: 123 PKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQP 169
Score = 256 (95.2 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 82/292 (28%), Positives = 146/292 (50%)
Query: 21 QIQWSLVVAMEEAHQEEALISHLLQDLFVNEKAGDESESESLPNANNLDE-----EEILG 75
Q + SL M A E +L+S ++ +L K+ DE + L ++ +D E+IL
Sbjct: 367 QAENSLAYHMIRA-LESSLVSLVISNL-QKPKSLDEKNNPLL-FSSEMDSSVEAVEKILN 423
Query: 76 YRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLR 135
Y F NK LL+E T + P ++ L +VG+S L+L TK + YP L P L+ LR
Sbjct: 424 YSFVNKTLLKELLTHNNSP----LFQGLMFVGESALSLAFTKHLYLTYPMLEPKDLSVLR 479
Query: 136 SANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI--LDYPLHSNGLVDAPKVLA 193
AN +K A VA+K G+++ + P E+ +F E + D P +V APK+L
Sbjct: 480 DANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDDPYR---VVKAPKILV 536
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH---PVTELYEVCQKNKLKV 250
+++ GAV+ID ++ + ++F+ LL+P+ + + L+ P L+ + K+ ++
Sbjct: 537 NLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQPFLMLFRLADKHGKQI 596
Query: 251 KF---VDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
F D ++++D + G A + + A AA++A+ + +
Sbjct: 597 DFRYSKDGGSRKNIAQVYMDDMFIASGC-AKRIDTAKLLAAEEAIQKLSECM 647
Score = 47 (21.6 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 225 MISPETLKTHPVT---ELYEVCQKNK 247
++ ++L PV EL E+C KNK
Sbjct: 295 VVDKDSLHVEPVNGRGELIEICTKNK 320
Score = 45 (20.9 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 224 PMISPETLKTHPVTELYEVCQKNKLKVK 251
P + PE +K +L+E+C KL+++
Sbjct: 254 PNVEPEDVKG----KLFEICYTRKLQIQ 277
Score = 44 (20.5 bits), Expect = 9.8e-30, Sum P(2) = 9.8e-30
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 224 PMISPETLKTHPVTELYEVCQKNK 247
P + PE K +L+E+C KNK
Sbjct: 831 PHVEPEDEKG----KLFEICAKNK 850
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 329 (120.9 bits), Expect = 3.8e-28, P = 3.8e-28
Identities = 78/207 (37%), Positives = 115/207 (55%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQ 119
L NNL+ E L Y+F +K LL +AF PS Y+RLE++GD+VL+ L+T
Sbjct: 1286 LTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYF 1345
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F ++P L PG LT LRS +VN E LA VA+ L ++L L E I +++ + P
Sbjct: 1346 FTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSP 1405
Query: 180 LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVT 237
L S PKVL D+VES +GA+F+DC +++ VW + L P+ + L+ P+
Sbjct: 1406 LASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIK 1465
Query: 238 ELYEVCQKNKLKVKFVDLWKESTAFHI 264
EL E+CQ K + + K+ AF +
Sbjct: 1466 ELIELCQSYKWD-REISATKKDGAFTV 1491
Score = 135 (52.6 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 32/73 (43%), Positives = 41/73 (56%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C ER S ERLE +GD+ L +++ F + +L G LTR RS VN L
Sbjct: 1105 EALTTEKCHERL-SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLC 1163
Query: 146 RVAIKLGLHKYLR 158
R+AIK L Y+R
Sbjct: 1164 RLAIKKNLQVYIR 1176
Score = 50 (22.7 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 190 KVLADIVESTIGAVFID 206
K +AD+VE+ +GA +D
Sbjct: 1233 KTIADVVEALVGAFLVD 1249
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 325 (119.5 bits), Expect = 9.8e-28, P = 9.8e-28
Identities = 72/201 (35%), Positives = 115/201 (57%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE++GY+F +K LL +AF PS + Y+RLE++GD+VL ++T + YP++ PG
Sbjct: 1218 EELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPG 1277
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD-- 187
+T LRS V + LA A++ +HK+L + L I +F E + L++
Sbjct: 1278 QITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKF-EMYVKLSNSEKDLLEEP 1336
Query: 188 -APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
PK L DIVES IGAV +D +++ VWKV LLKP+++ + T+P+ EL E+CQ +
Sbjct: 1337 ACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCH 1396
Query: 247 KLKVKFVDLWKESTAFHIFIE 267
++ K +H+ +E
Sbjct: 1397 GFELGLPKPMKADGEYHVKVE 1417
Score = 121 (47.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C ER S ER E +GD+ L ++ + +F Y L G LTR RS VN L
Sbjct: 1029 EALTTEKCLERI-SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLY 1087
Query: 146 RVAIKLGLHKYLR 158
++I+ L Y+R
Sbjct: 1088 ELSIRKKLQVYIR 1100
Score = 54 (24.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 190 KVLADIVESTIGAVFID 206
KV+AD+VES IGA ++
Sbjct: 1155 KVIADVVESLIGAFLVE 1171
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 172 (65.6 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 42/101 (41%), Positives = 58/101 (57%)
Query: 66 NNLDEEEILGYRFNNKNLLEEAFTDPSC----PERFFSY-ERLEYVGDSVLNLLLTKEQF 120
N + E+ILG+ FNN ++L A T PS PE + ERLE++GD+VL L ++ F
Sbjct: 5 NLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLF 64
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNK 161
+P G LT+LRS V E L +A K+ L K+LR K
Sbjct: 65 RTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGK 105
Score = 122 (48.0 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 45/120 (37%), Positives = 60/120 (50%)
Query: 192 LADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
LA+ VE+ IGAV+ DC ++ + +++ E LKP + E L T L E+ QK K
Sbjct: 119 LANAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPE-NLEQLPKDEKTTLQELLQKEKNN 177
Query: 250 VKFVDLWKESTAFH--IF-----IEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNEK 302
V ++ E H IF I D+L+ G KKE A AAK AL E L NEK
Sbjct: 178 VLRYEILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKE-AEQEAAKKAL---ELLKNEK 233
>FB|FBgn0039016 [details] [associations]
symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0016443 "bidentate ribonuclease III activity" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading
onto RISC involved in RNA interference" evidence=IMP] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0031054
"pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell
division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell
cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0007367 "segment polarity determination" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883
"pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA
binding" evidence=IDA] [GO:0030727 "germarium-derived female
germ-line cyst formation" evidence=IMP] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294
GO:GO:0045448 GO:GO:0046872 GO:GO:0003727 GO:GO:0048813
GO:GO:0003725 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422
GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592
Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693
GeneTree:ENSGT00510000046789 EMBL:AY050230 RefSeq:NP_524453.1
UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 DIP:DIP-23028N
IntAct:Q9VCU9 MINT:MINT-923321 STRING:Q9VCU9 PaxDb:Q9VCU9
PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693
KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016
eggNOG:COG0571 InParanoid:Q9VCU9 OMA:FLTPRYV OrthoDB:EOG44B8H0
PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 Bgee:Q9VCU9
GermOnline:CG4792 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9
Length = 2249
Score = 272 (100.8 bits), Expect = 6.2e-22, P = 6.2e-22
Identities = 70/190 (36%), Positives = 102/190 (53%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILD--YP 179
G+LT LRSA VN A +A++ G HK+ RH P L + I F I + Y
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISEEYYL 2116
Query: 180 LHSNGLVDA-----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP--ETLK 232
L DA PK L D+ ES GA+F+D N S+D+VW V+ ++ P I ++
Sbjct: 2117 LSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVP 2176
Query: 233 THPVTELYEV 242
P+ EL E+
Sbjct: 2177 KSPIRELLEL 2186
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 228 (85.3 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 71/249 (28%), Positives = 121/249 (48%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPN 125
L+ E + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK +
Sbjct: 1610 LNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQ 1669
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------D 177
PG LT LRSA VN A +A+K HKY + P L I +F + L D
Sbjct: 1670 HSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMD 1729
Query: 178 YPLHSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
L + ++ PK + DI ES GA+++D S++ VW+V+ +++P+I +
Sbjct: 1730 SELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFS 1789
Query: 231 LKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRA 287
P + + E+ + KF + + + +++G+G + IA + A
Sbjct: 1790 ANV-PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAA 1847
Query: 288 AKDALNNIE 296
A+ AL +++
Sbjct: 1848 ARRALRSLK 1856
Score = 46 (21.3 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 40 ISHLLQDLFVNEKAGDESESESLPNANNLDEEEILG 75
++ L +D F N G +++S+ LP+ +++ + LG
Sbjct: 1150 VTDLNKDCFPNLPNGTQADSDDLPHRSDVCQCSQLG 1185
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 232 (86.7 bits), Expect = 5.0e-19, P = 5.0e-19
Identities = 71/246 (28%), Positives = 121/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 149 EKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 208
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 209 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 268
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 269 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 328
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +L+G+G + IA + AA+
Sbjct: 329 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVELVGKGKFKGVGRSYRIAKSAAARR 386
Query: 291 ALNNIE 296
AL +++
Sbjct: 387 ALRSLK 392
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 171 (65.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 68 LDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
L+E + +LG F NK+LL EA T PS E+ SYERLE++GD+VLNL++ + L+P
Sbjct: 3 LEELQSLLGVYFKNKDLLVEALTHPSV-EKCPSYERLEFLGDAVLNLVIASMLYDLFPGD 61
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
P G L+ +SA + LA +A ++ L Y+R
Sbjct: 62 PEGRLSHRQSALICKNTLAMLARQMNLGDYIR 93
Score = 72 (30.4 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 26/115 (22%), Positives = 53/115 (46%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
D L +++E+ +GA+F+D + + K + ++++ +P + L E+ Q
Sbjct: 105 DKTSNLENVLEALVGAIFLDAGLET-VTCFIKKRWYGLAVQSDSIEPNPKSTLQELLQAK 163
Query: 247 KLKVKFVDLWKESTAFH--IF-IEDQLLG--RGAYAPKKEIAHNRAAKDALNNIE 296
+K ++ S H IF IE ++ G R A K++ AA+ L ++
Sbjct: 164 GMKPPIYNVINRSGPAHLPIFEIEIRVDGKKRRATGKSKKLGEENAARMMLEELK 218
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 233 (87.1 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 71/246 (28%), Positives = 121/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 568 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 627
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 628 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 687
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S++ VW+V+ +++P+I +
Sbjct: 688 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 747
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 748 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 805
Query: 291 ALNNIE 296
AL +++
Sbjct: 806 ALRSLK 811
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 237 (88.5 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 71/246 (28%), Positives = 122/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1665 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1784
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1785 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 1844
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1845 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1902
Query: 291 ALNNIE 296
AL +++
Sbjct: 1903 ALRSLK 1908
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 235 (87.8 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 71/246 (28%), Positives = 122/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1783
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1784 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1843
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1844 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1901
Query: 291 ALNNIE 296
AL +++
Sbjct: 1902 ALRSLK 1907
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 235 (87.8 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 71/246 (28%), Positives = 122/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1850
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1851 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1908
Query: 291 ALNNIE 296
AL +++
Sbjct: 1909 ALRSLK 1914
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 233 (87.1 bits), Expect = 7.2e-18, P = 7.2e-18
Identities = 71/246 (28%), Positives = 121/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1668 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1727
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 1728 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1787
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S++ VW+V+ +++P+I +
Sbjct: 1788 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1847
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1848 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1905
Query: 291 ALNNIE 296
AL +++
Sbjct: 1906 ALRSLK 1911
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 233 (87.1 bits), Expect = 7.2e-18, P = 7.2e-18
Identities = 71/246 (28%), Positives = 121/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S++ VW+V+ +++P+I +
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1850 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1907
Query: 291 ALNNIE 296
AL +++
Sbjct: 1908 ALRSLK 1913
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 231 (86.4 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 71/246 (28%), Positives = 121/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S++ VW+V+ +++P+I +
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1850
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1851 -PRSPVRELLEMEPEITKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1908
Query: 291 ALNNIE 296
AL +++
Sbjct: 1909 ALRSLK 1914
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 229 (85.7 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 70/246 (28%), Positives = 121/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1656 EKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1715
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 1716 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1775
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1776 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 1835
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1836 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1893
Query: 291 ALNNIE 296
AL +++
Sbjct: 1894 ALRSLK 1899
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 227 (85.0 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 69/246 (28%), Positives = 121/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + + D L
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1849 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1906
Query: 291 ALNNIE 296
AL +++
Sbjct: 1907 ALRSLK 1912
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 227 (85.0 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 69/246 (28%), Positives = 121/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + + D L
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1849 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1906
Query: 291 ALNNIE 296
AL +++
Sbjct: 1907 ALRSLK 1912
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 227 (85.0 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 69/246 (28%), Positives = 121/246 (49%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1673 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1732
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + + D L
Sbjct: 1733 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1792
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1793 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1852
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1853 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1910
Query: 291 ALNNIE 296
AL +++
Sbjct: 1911 ALRSLK 1916
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 223 (83.6 bits), Expect = 8.2e-17, P = 8.2e-17
Identities = 70/246 (28%), Positives = 119/246 (48%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1641 EKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1700
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 1701 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSEL 1760
Query: 181 HSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+ ++ PK + DI ES GA+++D S++ VW V+ +++P+I +
Sbjct: 1761 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKFSANV 1820
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF + + + +++G+G + IA + AA+
Sbjct: 1821 -PRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARR 1878
Query: 291 ALNNIE 296
AL +++
Sbjct: 1879 ALRSLK 1884
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 214 (80.4 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 50/150 (33%), Positives = 83/150 (55%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE +GY F NK LL AF PS + + +Y++LE++GD+VL+ ++ + + YPN
Sbjct: 1087 EETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNAT 1146
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY--PLHSNGL 185
G LT +S V + L+ + L LHKY++H + + I E+ E I + N
Sbjct: 1147 SGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENPW 1206
Query: 186 ----VDAPKVLADIVESTIGAVFIDCNSSI 211
+D+PK ++D +E+ I A+F+D S+
Sbjct: 1207 FWFEIDSPKFISDTLEAMICAIFLDSGFSL 1236
Score = 37 (18.1 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 1 MDTNTNKYLLALVVFSLHSLQIQWSLVVAMEEAHQEEALISHLLQDLFVNEKAGDESES 59
+DT N + L V ++ LQ L+V + +++ A + + + K D++ S
Sbjct: 775 VDTIQNFFKLPEPVQNVTDLQSDTVLLVNPQSIYEQYAFEGFVNSEFMIPAKKKDKAPS 833
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 160 (61.4 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 38/103 (36%), Positives = 58/103 (56%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1437 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1496
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN LA + ++ LH ++ L E I +F
Sbjct: 1497 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKF 1539
Score = 104 (41.7 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 29/116 (25%), Positives = 52/116 (44%)
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
VD PK L D++E+ I AV++DC + W+V L +P + T K P+ + ++ +
Sbjct: 1606 VDVPKALGDVLEALIAAVYLDCRD-LQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEH 1663
Query: 246 NKLKVKFVDLWKESTAFHIFIE----DQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
K F E + + ++ + + K+ A AAK AL + +
Sbjct: 1664 KHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1719
Score = 70 (29.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/71 (33%), Positives = 32/71 (45%)
Query: 87 AFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLAR 146
A T S + F ERLE +GDS L L T Y + G+LT ++S V+ L
Sbjct: 1197 AITASSAAD-VFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLLF 1255
Query: 147 VAIKLGLHKYL 157
I + K L
Sbjct: 1256 CLIDADIPKTL 1266
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 147 (56.8 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 39/103 (37%), Positives = 55/103 (53%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GYRF + L +AFT S + Y+RLE++GD+VL+ ++T+ F P
Sbjct: 1647 EEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYSP 1706
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G LT LRSA VN A +A+K K+ P L I +F
Sbjct: 1707 GVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKF 1749
Score = 105 (42.0 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 30/122 (24%), Positives = 59/122 (48%)
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP--ETLKTHPVTELYEVC 243
++ PK + DI ES GA+++D ++D W+V +++ I P+ EL E
Sbjct: 1783 IEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIELCCANPPRSPIRELMEF- 1841
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE--DQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNE 301
+++K++ ++ ES + +E + + G IA AAK AL + ++ +
Sbjct: 1842 EQSKVRFSKMERILESGKVRVTVEVVNNMRFTGM-GRNYRIAKATAAKRALKYLHQIEQQ 1900
Query: 302 KR 303
+R
Sbjct: 1901 RR 1902
Score = 75 (31.5 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 25/79 (31%), Positives = 36/79 (45%)
Query: 83 LLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTE 142
LL A T + + S ER E +GDS L T + + G L+ RS V+
Sbjct: 1396 LLLTALTTSNAADGM-SLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNC 1454
Query: 143 KLARVAIKLGLHKYLRHNK 161
L R+ KLG+ + + NK
Sbjct: 1455 NLYRLGKKLGIPQLIVANK 1473
Score = 55 (24.4 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 22 IQWSLVVAMEEAHQEEALISHLLQDLF-VNEKAGDESESESLPNANNLDEEEI 73
++W+ + E +++ +I +Q L +N+K+ ++ E E+ N D EE+
Sbjct: 1051 VEWNSLAYATEYEEKQTIIVKKIQQLRDLNQKSIEDQERETRENDKIDDGEEL 1103
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 163 (62.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 72 EILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+I GYRF + LL+ A T PS ER+ SYERLE++GD+VL L++++ + L+P+ G
Sbjct: 18 KISGYRFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDDSEGL 77
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNK 161
LT+ R A V K+ +A L L L +K
Sbjct: 78 LTKKRIALVRGSKVVEIAQSLNLGNILLMSK 108
Score = 56 (24.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 31/125 (24%), Positives = 56/125 (44%)
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVT 237
L S G+ + L + +E+ IGA+++D ++ V + KP+ + +T T
Sbjct: 111 LTSGGISNNSN-LENALEALIGAIYVD--GGLESVRHFILQHWKPLATNLADTPLQDAKT 167
Query: 238 ELYEVCQKNKLKVKFVDLWKESTAFH--IF-IEDQLLGRGAYAP--KKEIAHNRAAKDAL 292
L E Q + + L +S H +F +E + G+ +A KK+ A AAK L
Sbjct: 168 ALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHATGCKKKYAEIAAAKLML 227
Query: 293 NNIER 297
+ +
Sbjct: 228 EKVTK 232
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 164 (62.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 37/94 (39%), Positives = 62/94 (65%)
Query: 66 NNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYP 124
N+L++ E LG++FNN LL+ A T C + ERLE++GDSVL ++ E + P
Sbjct: 2 NHLNKLMERLGHQFNNLELLKIALTH--CSSGADNNERLEFLGDSVLGFIIASELYQRRP 59
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
G L+R+R++ VN ++LA+++ KLG+++YL+
Sbjct: 60 QAREGDLSRMRASMVNGDELAQMSTKLGINEYLQ 93
Score = 51 (23.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 191 VLADIVESTIGAVFID 206
+LAD +E+ +GA++ID
Sbjct: 109 ILADALEAIVGAIYID 124
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 117 (46.2 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 32/86 (37%), Positives = 47/86 (54%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G F ++ LL +AFT S ERLE++GD+VL L +++ F YP
Sbjct: 23 QEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPT 82
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKL 151
+ G LT+LR+A V L R A +L
Sbjct: 83 MSEGELTKLRAAIVCEPSLVRFANEL 108
Score = 105 (42.0 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 34/123 (27%), Positives = 67/123 (54%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVC 243
+ P +LAD+ E+ IGA+++D ++ VW KE++ P I+ E +H + ++L E+
Sbjct: 127 ERPALLADVFEAFIGALYLD--QGLETVWGFLKEIVYPKIN-EGAFSHVMDYKSQLQELI 183
Query: 244 QKNKL-KVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
Q++ +++ L ++ A + + + + LG G+ KKE A +AA +AL ++
Sbjct: 184 QRDGSGNIEYQILQEKGPAHNREFVSRVTLNNVALGLGSGKSKKE-AEQQAAAEALKKLK 242
Query: 297 RLL 299
L
Sbjct: 243 EQL 245
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 169 (64.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 73/240 (30%), Positives = 116/240 (48%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC----PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPN 125
E+ LG +F N +LLE+A S P S ER+E++GD+VL ++ + +P+
Sbjct: 8 EKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYHDFPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIR-EFSEAILDYPLHSNG 184
+ G LTR RS V E L RVA+ + L KYL + E+ + F P + G
Sbjct: 68 IQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRG--EDASKGRFK------PANLAG 119
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFK---ELLKPMISPETLKTHPVTELYE 241
+A VLA I G ID ++++++FK E ++ + S K+ + EL +
Sbjct: 120 AFEA--VLAAIYLDK-G---IDATR--EVIFRLFKTEMERVQTLSSNIDYKSR-LQELVQ 170
Query: 242 VCQKNKLKVKFVDLWKESTAFHIFI-----EDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ + + +D + H+FI ED++L G+ KKE A AAK+AL E
Sbjct: 171 AQFQLTPRYRIID-FSGPEHNHLFIAEVYTEDKVLAEGSGRSKKE-AETSAAKEALQQFE 228
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 133 (51.9 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY FN++ LL++A T S + ERLE++GDS+L+ ++ + +P + G ++R
Sbjct: 13 LGYTFNHQELLQQALTHRSASSKH--NERLEFLGDSILSYVIANALYHRFPRVDEGDMSR 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLR 158
+R+ V LA +A + L + LR
Sbjct: 71 MRATLVRGNTLAELAREFELGECLR 95
Score = 73 (30.8 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 47/150 (31%), Positives = 64/150 (42%)
Query: 164 LEEQIREFS--EAILDYP--LHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFK 219
L E REF E + P L S G +LAD VE+ IG VF+D S I V K+
Sbjct: 81 LAELAREFELGECLRLGPGELKSGGF-RRESILADTVEALIGGVFLD--SDIQTVEKLIL 137
Query: 220 ELLKPM---ISPETLKTHPVTELYEVCQKNKLKVK---FVDLWKES--TAFHIF-----I 266
+ ISP + P T L E Q L + V + E+ F I +
Sbjct: 138 NWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGL 197
Query: 267 EDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ ++G G+ K E A AA+ AL +E
Sbjct: 198 SEPVVGTGSSRRKAEQA---AAEQALKKLE 224
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 152 (58.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 33/89 (37%), Positives = 55/89 (61%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+I+ Y F N LL EA T PS + F+YERLE++GD+VLN+++++ F ++P
Sbjct: 7 KIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIFPKDTE 66
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYL 157
G+L + ++A V KL VA + L +++
Sbjct: 67 GNLAKKKTALVCGNKLVEVAQSINLGQFI 95
Score = 42 (19.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 192 LADIVESTIGAVFID--CNSSIDIVWKVFKELLKPM-ISPETLKT 233
L + +E+ IGA+++D ++ D ++ ++ M + P+ KT
Sbjct: 113 LENALEALIGAIYLDGGFTAAQDFIYLFWEHSATHMNVPPQDAKT 157
>UNIPROTKB|F1M2R2 [details] [associations]
symbol:F1M2R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
IPI:IPI00951546 Ensembl:ENSRNOT00000066555 ArrayExpress:F1M2R2
Uniprot:F1M2R2
Length = 287
Score = 138 (53.6 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 49 VNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLE 104
+ E D E+ P L E EE +G F + LL AFT + + +R+E
Sbjct: 1 LQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRME 60
Query: 105 YVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKY 156
++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG+ +Y
Sbjct: 61 FLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 112
Score = 59 (25.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 128 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 185
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 186 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 244
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 245 YNFPQMAHQKR 255
>RGD|1307626 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010586 "miRNA metabolic process" evidence=ISO]
[GO:0031054 "pre-miRNA processing" evidence=ISO] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1307626 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
HOGENOM:HOG000122291 HOVERGEN:HBG023130 OrthoDB:EOG4VQ9NG
UniGene:Rn.41113 IPI:IPI00870720 EMBL:AY373464
ProteinModelPortal:Q67B98 STRING:Q67B98 PRIDE:Q67B98
InParanoid:Q67B98 ArrayExpress:Q67B98 Genevestigator:Q67B98
Uniprot:Q67B98
Length = 288
Score = 138 (53.6 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 49 VNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLE 104
+ E D E+ P L E EE +G F + LL AFT + + +R+E
Sbjct: 2 LQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRME 61
Query: 105 YVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKY 156
++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG+ +Y
Sbjct: 62 FLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 113
Score = 59 (25.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 129 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 186
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 187 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 245
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 246 YNFPQMAHQKR 256
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 147 (56.8 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 41/124 (33%), Positives = 65/124 (52%)
Query: 37 EALISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE 95
E +++ L L + E D E+ P L E EE +G F + LL AFT +
Sbjct: 329 EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGF 388
Query: 96 RFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
+ +R+E++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG
Sbjct: 389 NHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELG 448
Query: 153 LHKY 156
+ +Y
Sbjct: 449 MQEY 452
Score = 126 (49.4 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N++ D P R ERLE++GD+V+ L + ++L+P+L G L R+A V
Sbjct: 200 NIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQN 259
Query: 142 EKLARVAIKLGLHKYL--RHNKPLLEE 166
+ LA +A KL L +++ H L E
Sbjct: 260 QHLAMLAKKLELDRFMLYAHGPDLCRE 286
Score = 59 (25.8 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 468 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 525
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 526 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 584
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 585 YNFPQMAHQKR 595
Score = 42 (19.8 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
D +A+ E+ IGAV+++ S++ ++F LL
Sbjct: 288 DLRHAMANCFEALIGAVYLE--GSLEEAKQLFGRLL 321
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 121 (47.7 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 63 PNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFL 122
P N L + LGY F LL A T S + ERLE++GDS+L+ ++ E +
Sbjct: 3 PPMNKLTSK--LGYTFKETELLNLALTHRSANGKH--NERLEFLGDSILSFVIADELYRR 58
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+P + G ++R+R+ V LA + + L YL+
Sbjct: 59 FPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYLK 94
Score = 67 (28.6 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 33/116 (28%), Positives = 52/116 (44%)
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ--KN 246
+LAD VE+ IGA+++D + ++ IV + + L+ I P + P T L E Q +
Sbjct: 110 ILADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEE-IKPGASQKDPKTRLQEFLQGRRK 168
Query: 247 KLKVKFVDLWK---ESTAFHIFIE-----DQLLGRGAYAPKKEIAHNRAAKDALNN 294
L V V K + F + E ++G+G K E A A + L N
Sbjct: 169 PLPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQLTN 224
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 121 (47.7 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 63 PNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFL 122
P N L + LGY F LL A T S + ERLE++GDS+L+ ++ E +
Sbjct: 3 PPMNKLTSK--LGYTFKETELLNLALTHRSANGKH--NERLEFLGDSILSFVIADELYRR 58
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+P + G ++R+R+ V LA + + L YL+
Sbjct: 59 FPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYLK 94
Score = 67 (28.6 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 33/116 (28%), Positives = 52/116 (44%)
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ--KN 246
+LAD VE+ IGA+++D + ++ IV + + L+ I P + P T L E Q +
Sbjct: 110 ILADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEE-IKPGASQKDPKTRLQEFLQGRRK 168
Query: 247 KLKVKFVDLWK---ESTAFHIFIE-----DQLLGRGAYAPKKEIAHNRAAKDALNN 294
L V V K + F + E ++G+G K E A A + L N
Sbjct: 169 PLPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQLTN 224
>TIGR_CMR|SO_1348 [details] [associations]
symbol:SO_1348 "ribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 RefSeq:NP_716968.1 ProteinModelPortal:Q8EH81
GeneID:1169169 KEGG:son:SO_1348 PATRIC:23522350 Uniprot:Q8EH81
Length = 226
Score = 130 (50.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F N +LL +A T S + ERLE++GDS+L+++++ + +P G L+R
Sbjct: 14 LGYEFKNLDLLTQALTHRSAANKH--NERLEFLGDSILSIVISDALYHQFPKATEGDLSR 71
Query: 134 LRSANVNTEKLARVA--IKLGLHKYL 157
+R+ V + L +A KLG + +L
Sbjct: 72 MRATLVRGDTLTLIAQAFKLGDYLFL 97
Score = 55 (24.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 191 VLADIVESTIGAVFIDCNSSI--DIVWKVFKELL---KPMISPETLKT 233
+LAD VE+ IGA+++D + + ++ + E L +P I+ + KT
Sbjct: 112 ILADAVEAIIGAIYLDSDLEVCRQLLLNWYAERLAEIQPGINQKDAKT 159
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 147 (56.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 41/124 (33%), Positives = 65/124 (52%)
Query: 37 EALISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE 95
E +++ L L + E D E+ P L E EE +G F + LL AFT +
Sbjct: 720 EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGF 779
Query: 96 RFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
+ +R+E++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG
Sbjct: 780 NHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELG 839
Query: 153 LHKY 156
+ +Y
Sbjct: 840 MQEY 843
Score = 126 (49.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N++ D P R ERLE++GD+V+ L + ++L+P+L G L R+A V
Sbjct: 591 NIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQN 650
Query: 142 EKLARVAIKLGLHKYL--RHNKPLLEE 166
+ LA +A KL L +++ H L E
Sbjct: 651 QHLAMLAKKLELDRFMLYAHGPDLCRE 677
Score = 59 (25.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 859 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 916
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 917 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 975
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 976 YNFPQMAHQKR 986
Score = 39 (18.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
D +A+ E+ IGAV+++ +++ ++F LL
Sbjct: 679 DLRHAMANCFEALIGAVYLE--GTLEEAKQLFGRLL 712
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 147 (56.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 41/124 (33%), Positives = 65/124 (52%)
Query: 37 EALISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE 95
E +++ L L + E D E+ P L E EE +G F + LL AFT +
Sbjct: 1075 EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGF 1134
Query: 96 RFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
+ +R+E++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG
Sbjct: 1135 NHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELG 1194
Query: 153 LHKY 156
+ +Y
Sbjct: 1195 MQEY 1198
Score = 126 (49.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N++ D P R ERLE++GD+V+ L + ++L+P+L G L R+A V
Sbjct: 946 NIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQN 1005
Query: 142 EKLARVAIKLGLHKYL--RHNKPLLEE 166
+ LA +A KL L +++ H L E
Sbjct: 1006 QHLAMLAKKLELDRFMLYAHGPDLCRE 1032
Score = 59 (25.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 1214 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 1271
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 1272 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 1330
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 1331 YNFPQMAHQKR 1341
Score = 42 (19.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
D +A+ E+ IGAV+++ S++ ++F LL
Sbjct: 1034 DLRHAMANCFEALIGAVYLE--GSLEEAKQLFGRLL 1067
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 147 (56.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 41/124 (33%), Positives = 65/124 (52%)
Query: 37 EALISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE 95
E +++ L L + E D E+ P L E EE +G F + LL AFT +
Sbjct: 1075 EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGF 1134
Query: 96 RFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
+ +R+E++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG
Sbjct: 1135 NHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELG 1194
Query: 153 LHKY 156
+ +Y
Sbjct: 1195 MQEY 1198
Score = 126 (49.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N++ D P R ERLE++GD+V+ L + ++L+P+L G L R+A V
Sbjct: 946 NIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQN 1005
Query: 142 EKLARVAIKLGLHKYL--RHNKPLLEE 166
+ LA +A KL L +++ H L E
Sbjct: 1006 QHLAMLAKKLELDRFMLYAHGPDLCRE 1032
Score = 59 (25.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 1214 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 1271
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 1272 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 1330
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 1331 YNFPQMAHQKR 1341
Score = 39 (18.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
D +A+ E+ IGAV+++ +++ ++F LL
Sbjct: 1034 DLRHAMANCFEALIGAVYLE--GTLEEAKQLFGRLL 1067
>UNIPROTKB|Q9NRR4 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010586 "miRNA metabolic process" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0010467 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0042254
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
BRENDA:3.1.26.3 PANTHER:PTHR11207 KO:K03685 EMBL:AF189011
EMBL:AC008768 EMBL:AC022417 EMBL:AC106802 EMBL:AJ242976
EMBL:AK001121 EMBL:BC041162 EMBL:BC054003 EMBL:AF116910
IPI:IPI00219990 IPI:IPI00300956 IPI:IPI00942044 RefSeq:NP_037367.3
UniGene:Hs.97997 PDB:2KHX PDBsum:2KHX ProteinModelPortal:Q9NRR4
SMR:Q9NRR4 DIP:DIP-33300N IntAct:Q9NRR4 MINT:MINT-1184869
STRING:Q9NRR4 PhosphoSite:Q9NRR4 DMDM:20139357 PaxDb:Q9NRR4
PRIDE:Q9NRR4 Ensembl:ENST00000344624 Ensembl:ENST00000511367
GeneID:29102 KEGG:hsa:29102 UCSC:uc003jhg.2 CTD:29102
GeneCards:GC05M031401 H-InvDB:HIX0004780 HGNC:HGNC:17904 MIM:608828
neXtProt:NX_Q9NRR4 PharmGKB:PA142671060 HOGENOM:HOG000122291
HOVERGEN:HBG023130 InParanoid:Q9NRR4 OMA:SGKEKNY OrthoDB:EOG4VQ9NG
ChiTaRS:DROSHA EvolutionaryTrace:Q9NRR4 GenomeRNAi:29102
NextBio:52141 ArrayExpress:Q9NRR4 Bgee:Q9NRR4 CleanEx:HS_RNASEN
Genevestigator:Q9NRR4 GermOnline:ENSG00000113360 Uniprot:Q9NRR4
Length = 1374
Score = 147 (56.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 41/124 (33%), Positives = 65/124 (52%)
Query: 37 EALISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE 95
E +++ L L + E D E+ P L E EE +G F + LL AFT +
Sbjct: 1076 EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGF 1135
Query: 96 RFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
+ +R+E++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG
Sbjct: 1136 NHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELG 1195
Query: 153 LHKY 156
+ +Y
Sbjct: 1196 MQEY 1199
Score = 126 (49.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N++ D P R ERLE++GD+V+ L + ++L+P+L G L R+A V
Sbjct: 947 NIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQN 1006
Query: 142 EKLARVAIKLGLHKYL--RHNKPLLEE 166
+ LA +A KL L +++ H L E
Sbjct: 1007 QHLAMLAKKLELDRFMLYAHGPDLCRE 1033
Score = 59 (25.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 1215 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 1272
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 1273 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 1331
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 1332 YNFPQMAHQKR 1342
Score = 42 (19.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
D +A+ E+ IGAV+++ S++ ++F LL
Sbjct: 1035 DLRHAMANCFEALIGAVYLE--GSLEEAKQLFGRLL 1068
>TIGR_CMR|GSU_2228 [details] [associations]
symbol:GSU_2228 "ribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:NP_953277.1 ProteinModelPortal:Q74AX1 GeneID:2687587
KEGG:gsu:GSU2228 PATRIC:22027311 ProtClustDB:CLSK828768
BioCyc:GSUL243231:GH27-2184-MONOMER Uniprot:Q74AX1
Length = 248
Score = 130 (50.8 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 35/93 (37%), Positives = 48/93 (51%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-----YERLEYVGDSVLNLLLTKEQFFLYPN 125
E +GYRF ++ L+EA T S S ERLE+ GD++L + K YP
Sbjct: 20 ETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYPE 79
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
G+L R++SA V E LA +A + L YLR
Sbjct: 80 SREGALARMKSALVGEETLADLAAAVELGSYLR 112
Score = 53 (23.7 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 265 FIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
++ ++LLG+G KKE A AA+ L +E
Sbjct: 210 YVGERLLGQGTGRSKKE-AEQAAARQCLERLE 240
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 146 (56.5 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 45/144 (31%), Positives = 69/144 (47%)
Query: 65 ANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYP 124
A L E + +F + + A T P + Y+R E+ GDSVL + F+ P
Sbjct: 874 ATRLCETVLRDIQFQDLRHVITAITMPLA-QAPTDYQRYEFFGDSVLKFTVAASLFYNNP 932
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
N G LT A V +L R A+ GL Y+ N+ R++S ++ L+++
Sbjct: 933 NWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNR----FTPRKWSAPLISEKLYASA 988
Query: 185 LVDA--PKVLADIVESTIGAVFID 206
+ KVLAD+VE+ IGA +ID
Sbjct: 989 STRSMSAKVLADVVEALIGAAYID 1012
Score = 134 (52.2 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP--ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY F +K LL EA T PSCP SY+RLE++GD+VL++L+ +
Sbjct: 1060 ENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQQ 1119
Query: 129 GSLTRLRSANVNTEKLA 145
G +T+++ A VN LA
Sbjct: 1120 GEMTKIKHAIVNGHLLA 1136
Score = 72 (30.4 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 158 RHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSI 211
RHN LL I YP + A K +D+VES IGA+F+D +
Sbjct: 1202 RHN--LLCPSILHALNNTTAYPWSLFSAIHADKFFSDVVESIIGAIFVDSGGDL 1253
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 144 (55.7 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 40/124 (32%), Positives = 65/124 (52%)
Query: 37 EALISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE 95
E +++ L L + E D E+ P L E E+ +G F + LL AFT +
Sbjct: 1030 EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGF 1089
Query: 96 RFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
+ +R+E++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG
Sbjct: 1090 NHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELG 1149
Query: 153 LHKY 156
+ +Y
Sbjct: 1150 MQEY 1153
Score = 126 (49.4 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N++ D P R ERLE++GD+V+ L + ++L+P+L G L R+A V
Sbjct: 901 NIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQN 960
Query: 142 EKLARVAIKLGLHKYL--RHNKPLLEE 166
+ LA +A KL L +++ H L E
Sbjct: 961 QHLAMLAKKLELDRFMLYAHGPDLCRE 987
Score = 59 (25.8 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 1169 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 1226
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 1227 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 1285
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 1286 YNFPQMAHQKR 1296
Score = 42 (19.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
D +A+ E+ IGAV+++ S++ ++F LL
Sbjct: 989 DLRHAMANCFEALIGAVYLE--GSLEEAKQLFGRLL 1022
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 143 (55.4 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 61/236 (25%), Positives = 112/236 (47%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
N+++ E L Y F +KNLL A T S ++ ++ ERLE++GD+VL+L++ + F +
Sbjct: 3 NIEKLERSLTYEFKDKNLLIHALTHKSF-KKSYNNERLEFLGDAVLDLVVGEYLFHKFAK 61
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G L++LR+A VN + A++A L L ++ + + E + + P + L
Sbjct: 62 DAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMS-------VAEENNGGREKP---SIL 111
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKEL-LKPMISPETLKTHPVTE--LYEV 242
DA + + + G F ++ ++ K F ++ K +I K +T+ + +
Sbjct: 112 SDALEAIIGAIHLEAGFEFTK-TIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQT 170
Query: 243 CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
Q ++ D K+ + ++ + L R KKE A AAK AL + L
Sbjct: 171 PQYETVRAFGPDHLKQFE-IALMLDGKELARAIAGSKKE-AQQMAAKIALEKLGAL 224
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 144 (55.7 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 40/124 (32%), Positives = 65/124 (52%)
Query: 37 EALISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE 95
E +++ L L + E D E+ P L E E+ +G F + LL AFT +
Sbjct: 1070 EVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGF 1129
Query: 96 RFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
+ +R+E++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG
Sbjct: 1130 NHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELG 1189
Query: 153 LHKY 156
+ +Y
Sbjct: 1190 MQEY 1193
Score = 126 (49.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N++ D P R ERLE++GD+V+ L + ++L+P+L G L R+A V
Sbjct: 941 NIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQN 1000
Query: 142 EKLARVAIKLGLHKYL--RHNKPLLEE 166
+ LA +A KL L +++ H L E
Sbjct: 1001 QHLAMLAKKLELDRFMLYAHGPDLCRE 1027
Score = 59 (25.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 1209 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 1266
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 1267 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 1325
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 1326 YNFPQMAHQKR 1336
Score = 42 (19.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
D +A+ E+ IGAV+++ S++ ++F LL
Sbjct: 1029 DLRHAMANCFEALIGAVYLE--GSLEEAKQLFGRLL 1062
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 141 (54.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 39/121 (32%), Positives = 64/121 (52%)
Query: 40 ISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFF 98
+++ L L + E D E+ P L E EE +G F + LL AFT +
Sbjct: 1041 LNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHL 1100
Query: 99 SY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHK 155
+ +R+E++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG+ +
Sbjct: 1101 TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 1160
Query: 156 Y 156
+
Sbjct: 1161 F 1161
Score = 126 (49.4 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N++ D P R ERLE++GD+V+ L + ++L+P L G L R+A V
Sbjct: 909 NIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQN 968
Query: 142 EKLARVAIKLGLHKYL--RHNKPLLEE 166
+ LA +A KL L +++ H L E
Sbjct: 969 QHLAMLAKKLELDRFMLYAHGPDLCRE 995
Score = 59 (25.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 1177 KTLADLLESFIAALYID--KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 1234
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 1235 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 1293
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 1294 YNFPQMAHQKR 1304
Score = 42 (19.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
D +A+ E+ IGAV+++ S++ ++F LL
Sbjct: 997 DLRHAMANCFEALIGAVYLE--GSLEEAKQLFGRLL 1030
>ZFIN|ZDB-GENE-070209-23 [details] [associations]
symbol:rnasen "ribonuclease type III, nuclear"
species:7955 "Danio rerio" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 ZFIN:ZDB-GENE-070209-23
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 OMA:SGKEKNY
EMBL:BX571950 IPI:IPI00499713 Ensembl:ENSDART00000089017
ArrayExpress:F1QKS5 Bgee:F1QKS5 Uniprot:F1QKS5
Length = 1289
Score = 136 (52.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 39/124 (31%), Positives = 63/124 (50%)
Query: 37 EALISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE 95
E +++ L V E D ES P L E+ +G F + LL AFT +
Sbjct: 996 EVWLNYPPHPLQVQEPLTDRQLIESSPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGF 1055
Query: 96 RFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
+ +R+E++GDS++ L+ T+ F +P+ G LT LRS+ VN A+VA +LG
Sbjct: 1056 NHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELG 1115
Query: 153 LHKY 156
+ ++
Sbjct: 1116 MQEF 1119
Score = 123 (48.4 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 37/117 (31%), Positives = 59/117 (50%)
Query: 90 DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAI 149
DPS P R ERLE++GD+V+ L + + L+P+L G L R+A V + LA +A
Sbjct: 876 DPS-PSRINHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAK 934
Query: 150 KLGLHKYL--RHNKPLLEEQ-IREFS----EAILDYPLHSNGLVDAPKVLADIVEST 199
KL L +++ H L E +R EA++ GL +A + ++ +T
Sbjct: 935 KLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGGLEEAKDLFGRLLFNT 991
Score = 60 (26.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 33/131 (25%), Positives = 56/131 (42%)
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN 246
K LAD++ES I A++ID ++ V P + L P ++L + C
Sbjct: 1135 KTLADLLESFIAALYID--KDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL 1192
Query: 247 KLKVKFVD--LWKESTAF---H-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN- 293
+ + K D L+K H ++ + + +G G P + A AA DAL
Sbjct: 1193 RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEK 1251
Query: 294 -NIERLLNEKR 303
N ++ ++KR
Sbjct: 1252 YNFPQMAHQKR 1262
Score = 50 (22.7 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS 92
++++GY F + LL+ A T PS
Sbjct: 800 DKLIGYMFKERCLLQLAMTHPS 821
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 115 (45.5 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CP-ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE+LGY FN K+LL EA T S P S ERLE++GDSVL+ ++ F + P
Sbjct: 1172 EELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPAP 1231
Query: 128 PG--SLTRLRSANVNTEKLARVAIK 150
++ LR+A VN E L +A++
Sbjct: 1232 IEHYNMHLLRTAVVNGEFLGFLAME 1256
Score = 83 (34.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 41/153 (26%), Positives = 67/153 (43%)
Query: 134 LRSANVNTEKLARVAIK-LGLHKYLRHN--------KPLLEEQIREFSEAILD------- 177
+R+ ++L V L L +LRHN + L EE+ E + I D
Sbjct: 1268 VRTGQGTADELETVETPGLPLFGFLRHNASGDWVRDQQLAEERHAEMAPGIRDALEHGQR 1327
Query: 178 YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKEL-----LKPMISPETLK 232
YP + KV +D++E+ IGAV++D + S++ K+ + + L +
Sbjct: 1328 YPWDLLARLRISKVHSDVLEAVIGAVWVD-SGSLEECEKLIERVGILRYLDRALRDGVKI 1386
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFHIF 265
HP EL V Q NK+ K VD K + ++
Sbjct: 1387 LHPKEELGRVAQNNKVVYK-VDKAKRAARAEVY 1418
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 132 (51.5 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 39/124 (31%), Positives = 66/124 (53%)
Query: 42 HLLQ-DLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS 99
HL + +L + + GD S P + E+I+G FNN LL +AFT + P +
Sbjct: 784 HLNEHELKIEDPLGDRDLSRITPALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLT 843
Query: 100 Y---ERLEYVGDSVLNLLLTKEQFFLYPNLP---PGSLTRLRSANVNTEKLARVAIKLGL 153
+RLE++GDSVL L+++ +LY N P G ++ LR++ V+ + + V LG
Sbjct: 844 KGHNQRLEWLGDSVLQLIISD---YLYRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGF 900
Query: 154 HKYL 157
+++
Sbjct: 901 QEFV 904
Score = 60 (26.2 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 171 FSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISP 228
F E ++ P N L K AD+VE+ IGA+++D + VF LK I+
Sbjct: 900 FQEFVIKAPHRKNDLKMKDK--ADLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINS 957
Query: 229 E 229
E
Sbjct: 958 E 958
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 66/246 (26%), Positives = 111/246 (45%)
Query: 64 NANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFL 122
N +NL + LGY FN LL +A T S + ERLE++GDS+L ++ + +
Sbjct: 4 NPHNLARLTKKLGYEFNEPLLLVQALTHRSA--KGAHNERLEFLGDSILGFVIAEALYDK 61
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
+P G LTR+RS+ V LA VA L + L L+ E+IL+ + +
Sbjct: 62 FPKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSG-GHHRESILEDAIEA 120
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
++ A V D S I +C ++ + W F+ L +I P + P T L E
Sbjct: 121 --IIGA--VYLD---SNI-----ECCKALILSW--FERRLM-VIKPGNEQKDPKTRLQEF 165
Query: 243 CQKNKLKV---KFVDLWKES--TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
Q K+ + + +D +S F + + ++ A K + +A ++A I
Sbjct: 166 LQGRKIPLPTYEVIDTTGQSHNQEFTVRCQTSVISEVVIA--KGTSRRKAEQEAAQQILA 223
Query: 298 LLNEKR 303
L+ ++R
Sbjct: 224 LIEKER 229
>UNIPROTKB|P66666 [details] [associations]
symbol:rnc "Ribonuclease 3" species:1773 "Mycobacterium
tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
EMBL:BX842581 GO:GO:0016075 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
HOGENOM:HOG000246808 OMA:LTHKSCK PIR:E70748 RefSeq:NP_217441.1
RefSeq:NP_337508.1 RefSeq:YP_006516379.1 PDB:2A11 PDBsum:2A11
ProteinModelPortal:P66666 SMR:P66666 PRIDE:P66666
EnsemblBacteria:EBMYCT00000002463 EnsemblBacteria:EBMYCT00000072869
GeneID:13317719 GeneID:887873 GeneID:925280 KEGG:mtc:MT2995
KEGG:mtu:Rv2925c KEGG:mtv:RVBD_2925c PATRIC:18128352
TubercuList:Rv2925c EvolutionaryTrace:P66666 Uniprot:P66666
Length = 240
Score = 132 (51.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 64/208 (30%), Positives = 96/208 (46%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE++GD+VL L +T F +P+ G L +LR++ VNT+ LA VA +L H
Sbjct: 41 ERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVH- 99
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFID--CNSSIDIVWKVF 218
LL EA + G D +LAD +ES +GA+++ + +++ ++F
Sbjct: 100 -VLLGR-----GEA-------NTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLF 146
Query: 219 KELLK--PMISPET-LKT--HPVTELYEVCQKNKLKVKF-VDLWKESTAFHIFIEDQLLG 272
LL P + KT +T + + L D KE TA + + D G
Sbjct: 147 GPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAV-VVVMDSEYG 205
Query: 273 RGAYAPKKEIAHNRAAKDALNNIERLLN 300
G KKE A +AA A +E L N
Sbjct: 206 SGVGRSKKE-AEQKAAAAAWKALEVLDN 232
>FB|FBgn0026722 [details] [associations]
symbol:drosha "drosha" species:7227 "Drosophila melanogaster"
[GO:0031053 "primary miRNA processing" evidence=ISS;IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004525 "ribonuclease III
activity" evidence=ISS;NAS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA;ISS] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030727
"germarium-derived female germ-line cyst formation" evidence=IMP]
[GO:0007294 "germarium-derived oocyte fate determination"
evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 EMBL:AE013599 GO:GO:0007294 GO:GO:0022008
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0016075
GO:GO:0030727 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 HSSP:O67082 OMA:RFHKSLD
CTD:29102 ChiTaRS:DROSHA EMBL:AF116572 EMBL:BT023503
RefSeq:NP_477436.1 UniGene:Dm.4482 SMR:Q7KNF1 IntAct:Q7KNF1
STRING:Q7KNF1 EnsemblMetazoa:FBtr0088850 GeneID:35747
KEGG:dme:Dmel_CG8730 UCSC:CG8730-RA FlyBase:FBgn0026722
InParanoid:Q7KNF1 OrthoDB:EOG4BRV1K GenomeRNAi:35747 NextBio:795024
Uniprot:Q7KNF1
Length = 1327
Score = 138 (53.6 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 44/141 (31%), Positives = 71/141 (50%)
Query: 39 LISHLLQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERF 97
L H LQ+ E GD S +S L + E+ +G +F + LL AFTD S
Sbjct: 949 LPEHPLQE---QEPLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTH 1005
Query: 98 F---SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLH 154
S +RLE++GD+VL L+ ++ + +P G L+ LRS+ VN A V LG+
Sbjct: 1006 LTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMP 1065
Query: 155 KYLRHNKPLLEEQIREFSEAI 175
KY + P + + ++ ++ +
Sbjct: 1066 KYAVYANPKADLKTKDRADLL 1086
Score = 123 (48.4 bits), Expect = 0.00032, P = 0.00032
Identities = 45/152 (29%), Positives = 70/152 (46%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL--R 158
ERLE++GD+V+ L + FF++P L G L R+A V + LA +A KL L +++
Sbjct: 833 ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYA 892
Query: 159 HNKPLLEE-QIREFS----EAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDI 213
H L E ++R EA++ L G+ A +V D A+F + I
Sbjct: 893 HGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTD-------ALFRQDEKLLSI 945
Query: 214 VWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
WK E P+ E L + Y V ++
Sbjct: 946 -WKNLPE--HPLQEQEPLGDRSCIDSYRVLKE 974
>POMBASE|SPBC119.11c [details] [associations]
symbol:pac1 "double-strand-specific ribonuclease Pac1"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016180
"snRNA processing" evidence=IMP] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IMP] [GO:0032296
"double-stranded RNA-specific ribonuclease activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 PomBase:SPBC119.11c InterPro:IPR014720 GO:GO:0007126
GO:GO:0005730 GO:GO:0046872 EMBL:CU329671 Gene3D:3.30.160.20
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 GO:GO:0031137 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 PANTHER:PTHR11207 GO:GO:0032296 GO:GO:0016180
EMBL:X54998 EMBL:X53769 EMBL:S78982 EMBL:AY695821 EMBL:AY695822
PIR:S12605 RefSeq:NP_595292.1 ProteinModelPortal:P22192
STRING:P22192 EnsemblFungi:SPBC119.11c.1 GeneID:2540084
KEGG:spo:SPBC119.11c KO:K03685 OMA:PKIANIT OrthoDB:EOG40ZV6Z
NextBio:20801221 GermOnline:SPBC119.11c Uniprot:P22192
Length = 363
Score = 127 (49.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 39/131 (29%), Positives = 61/131 (46%)
Query: 50 NEKAGDE-SESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSY--ERLEYV 106
NE +E E E P L E++ F + + E + + S P ERLE++
Sbjct: 118 NEPTSEEFEEGEYPPPLPPLRSEKLKEQVFMHISRAYEIYPNQSNPNELLDIHNERLEFL 177
Query: 107 GDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEE 166
GDS NL T+ F +P + GSL++LR+ V E + A G K L + ++
Sbjct: 178 GDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKD 237
Query: 167 QIREFSEAILD 177
Q+R+ + I D
Sbjct: 238 QLRKSQKVIAD 248
>SGD|S000004852 [details] [associations]
symbol:RNT1 "Nuclear dsRNA-specific ribonuclease (RNase III)"
species:4932 "Saccharomyces cerevisiae" [GO:0060237 "regulation of
fungal-type cell wall organization" evidence=IGI;IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0034963 "box C/D snoRNA processing"
evidence=IMP] [GO:0034964 "box H/ACA snoRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009303
"rRNA transcription" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP;IDA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA;IDA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030847 "termination of RNA
polymerase II transcription, exosome-dependent"
evidence=IMP;IDA;IPI] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IMP] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 SGD:S000004852
InterPro:IPR014720 GO:GO:0005654 GO:GO:0005730 Gene3D:3.30.160.20
EMBL:BK006946 GO:GO:0003725 GO:GO:0016075 GO:GO:0009303
GO:GO:0060237 GO:GO:0006325 EMBL:Z49939 GO:GO:0006364 GO:GO:0006379
EMBL:Z48756 EMBL:U27016 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
GO:GO:0034475 GO:GO:0034476 GO:GO:0030847 KO:K03685 PIR:S56053
RefSeq:NP_013966.1 PDB:1T4L PDB:1T4N PDB:1T4O PDB:2LBS PDB:2LUP
PDB:2LUQ PDBsum:1T4L PDBsum:1T4N PDBsum:1T4O PDBsum:2LBS
PDBsum:2LUP PDBsum:2LUQ ProteinModelPortal:Q02555 SMR:Q02555
DIP:DIP-4298N IntAct:Q02555 MINT:MINT-567072 STRING:Q02555
PaxDb:Q02555 EnsemblFungi:YMR239C GeneID:855280 KEGG:sce:YMR239C
CYGD:YMR239c HOGENOM:HOG000000766 OMA:VIRARVF OrthoDB:EOG4JT3FD
EvolutionaryTrace:Q02555 NextBio:978911 Genevestigator:Q02555
GermOnline:YMR239C GO:GO:0034473 Uniprot:Q02555
Length = 471
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 75/277 (27%), Positives = 132/277 (47%)
Query: 45 QDLFVNEKAGDESESESLPNANNLDEEEILGYR---FNNKNLLEEAFTDPSCPERFFSY- 100
+D + KAGD ++ P L E + L R F +K+ +++ S E ++
Sbjct: 181 EDSYDPTKAGDIVKATKWPP--KLPEIQDLAIRARVFIHKSTIKDKVY-LSGSEMINAHN 237
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE++GDS+LN ++T + +P+ G L+ LR V+ E++ + +I H+ L+ N
Sbjct: 238 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 297
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDC-NSSIDIVWKVFK 219
L +E F NG + K+ AD+ E+ IG + D +++ + K +
Sbjct: 298 FDLKDEN-SNFQ----------NGKL---KLYADVFEAYIGGLMEDDPRNNLPKIRKWLR 343
Query: 220 ELLKPMISPETL------KTHPVT-----ELYEVCQKNKLKVKFVDLWKESTAF--HIFI 266
+L KP+I T KT + +LY + L++ +V + K+ TA + +
Sbjct: 344 KLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLIGYASLRLHYVTV-KKPTAVDPNSIV 402
Query: 267 EDQL-----LGRGAYAPKKEIAHNRAAKDALNNIERL 298
E ++ LG G K IA RAA++AL + + L
Sbjct: 403 ECRVGDGTVLGTGVGRNIK-IAGIRAAENALRDKKML 438
>WB|WBGene00009163 [details] [associations]
symbol:drsh-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0009792
GO:GO:0030154 GO:GO:0007052 GO:GO:0046872 Gene3D:3.30.160.20
GO:GO:0007506 GO:GO:0000910 GO:GO:0003725 GO:GO:0016075
GO:GO:0019953 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:Z81070 HOGENOM:HOG000154167
EMBL:AF160248 PIR:T21420 RefSeq:NP_001122460.2 RefSeq:NP_492599.1
ProteinModelPortal:O01326 SMR:O01326 STRING:O01326 PaxDb:O01326
EnsemblMetazoa:F26E4.10a GeneID:172830 KEGG:cel:CELE_F26E4.10
UCSC:F26E4.10a CTD:172830 WormBase:F26E4.10a WormBase:F26E4.10b
InParanoid:O01326 OMA:RFHKSLD NextBio:877175 Uniprot:O01326
Length = 1086
Score = 121 (47.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 35/108 (32%), Positives = 57/108 (52%)
Query: 54 GDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDS 109
GD S P + EE LG +FNN LL +AFT + P + +RLE++GDS
Sbjct: 819 GDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDS 878
Query: 110 VLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
VL L+++ + +P G ++ LR++ V+ + A V LG +++
Sbjct: 879 VLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV 926
Score = 54 (24.1 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 171 FSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFID-----CNSSIDIVWKVFKELLKPM 225
F+E ++ P + L K AD+VE+ IGA+++D C + I IV F LK
Sbjct: 922 FTEFVIKAPYKTPELKLKDK--ADLVEAFIGALYVDRGIEHCRAFIRIV---FCPRLKHF 976
Query: 226 ISPE 229
I E
Sbjct: 977 IESE 980
>UNIPROTKB|O01326 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6239 "Caenorhabditis
elegans" [GO:0005634 "nucleus" evidence=IC] [GO:0031053 "primary
miRNA processing" evidence=IMP] [GO:0019953 "sexual reproduction"
evidence=IMP] [GO:0004525 "ribonuclease III activity" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0009792 GO:GO:0030154 GO:GO:0007052
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0000910
GO:GO:0003725 GO:GO:0016075 GO:GO:0019953 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 GeneTree:ENSGT00690000102147
EMBL:Z81070 HOGENOM:HOG000154167 EMBL:AF160248 PIR:T21420
RefSeq:NP_001122460.2 RefSeq:NP_492599.1 ProteinModelPortal:O01326
SMR:O01326 STRING:O01326 PaxDb:O01326 EnsemblMetazoa:F26E4.10a
GeneID:172830 KEGG:cel:CELE_F26E4.10 UCSC:F26E4.10a CTD:172830
WormBase:F26E4.10a WormBase:F26E4.10b InParanoid:O01326 OMA:RFHKSLD
NextBio:877175 Uniprot:O01326
Length = 1086
Score = 121 (47.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 35/108 (32%), Positives = 57/108 (52%)
Query: 54 GDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDS 109
GD S P + EE LG +FNN LL +AFT + P + +RLE++GDS
Sbjct: 819 GDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDS 878
Query: 110 VLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
VL L+++ + +P G ++ LR++ V+ + A V LG +++
Sbjct: 879 VLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV 926
Score = 54 (24.1 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 171 FSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFID-----CNSSIDIVWKVFKELLKPM 225
F+E ++ P + L K AD+VE+ IGA+++D C + I IV F LK
Sbjct: 922 FTEFVIKAPYKTPELKLKDK--ADLVEAFIGALYVDRGIEHCRAFIRIV---FCPRLKHF 976
Query: 226 ISPE 229
I E
Sbjct: 977 IESE 980
>UNIPROTKB|A7TR32 [details] [associations]
symbol:Kpol_455p11 "Putative uncharacterized protein"
species:436907 "Vanderwaltozyma polyspora DSM 70294" [GO:0042802
"identical protein binding" evidence=IPI] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 OrthoDB:EOG4JT3FD EMBL:DS480469
RefSeq:XP_001643138.1 PDB:3RV0 PDB:3RV1 PDBsum:3RV0 PDBsum:3RV1
ProteinModelPortal:A7TR32 GeneID:5543348 KEGG:vpo:Kpol_455p11
Uniprot:A7TR32
Length = 558
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 58/207 (28%), Positives = 94/207 (45%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
S ERLE++GDS L L++ + +P+ G L++++ + VN L + KL K L+
Sbjct: 142 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ 201
Query: 159 HNKPLLEEQIRE-FSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKV 217
N +++ S+ D V+A + +V G F+D ++ + +
Sbjct: 202 GNIATPTRVVKDKMSKRYAD-------CVEA--YIGALVIDRFGTEFLDIKEWLEELSE- 251
Query: 218 FKELLKP--MISPETLKTHPVTELYEVCQKNKL--KVKFVDLWKESTAFHIFIE--DQLL 271
K+L K M+ E L + EL E+ Q NKL K+ + L E F + ++ D LL
Sbjct: 252 -KKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKL-TEMPPFRVEVKIGDILL 309
Query: 272 GRGAYAPKKEIAHNRAAKDALNNIERL 298
+E H RAA L N E L
Sbjct: 310 DEAEGNSIREAEH-RAAMKVLENDELL 335
>ASPGD|ASPL0000015309 [details] [associations]
symbol:AN11224 species:162425 "Emericella nidulans"
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0032296
"double-stranded RNA-specific ribonuclease activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0031137
"regulation of conjugation with cellular fusion" evidence=IEA]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0060237 "regulation of
fungal-type cell wall organization" evidence=IEA] [GO:0006325
"chromatin organization" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=IEA]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end
processing" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 EMBL:BN001302 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 EnsemblFungi:CADANIAT00004360
HOGENOM:HOG000216942 OMA:TKGDIFE Uniprot:C8V3S2
Length = 355
Score = 115 (45.5 bits), Expect = 0.00042, P = 0.00042
Identities = 55/224 (24%), Positives = 102/224 (45%)
Query: 84 LEEA-FTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
LE A FT P + +Y+RLE +GD+ + L+ TK + + ++P G ++++R V
Sbjct: 127 LERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKN 186
Query: 142 EKLARVAIKLGLHKYLRHNKPL-LEEQIREFSEAILD-YPLHSNGLVDAPKVLADIVEST 199
E LA A + G+ K + + P L Q + + + D + + ++ + + E+
Sbjct: 187 ETLAEYATQYGIDK--KASVPAELYNQPKRWIKTKGDIFEAYVAAVILSHPDGYSVAETW 244
Query: 200 IGAVFIDCNSSIDIVWKVF--KELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWK 257
+ ++ S + F KE L I+ K + E V + + F+ ++
Sbjct: 245 LSELWSPKLDSFEGSVSTFQAKEALAKKINGRGAKLRYIDEKESVQHQGGTQTFFIGVYF 304
Query: 258 ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNE 301
++ ++ LG G K IA +RAA+ AL N E L+ E
Sbjct: 305 TGWGWN----NKHLGSGQ-GSNKTIAGDRAAQQALENTE-LIQE 342
>CGD|CAL0001312 [details] [associations]
symbol:DCR1 species:5476 "Candida albicans" [GO:0004525
"ribonuclease III activity" evidence=TAS] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=TAS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IEA] [GO:0006325 "chromatin organization" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0030847 "termination of RNA polymerase II
transcription, exosome-dependent" evidence=IEA] [GO:0034475 "U4
snRNA 3'-end processing" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720 CGD:CAL0001312
GO:GO:0005737 GO:GO:0046872 GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0030422 GO:GO:0016075
GO:GO:0019843 EMBL:AACQ01000057 GO:GO:0006364 GO:GO:0004525
GO:GO:0035196 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 GO:GO:0003968 RefSeq:XP_717201.1
ProteinModelPortal:Q5A694 STRING:Q5A694 GeneID:3641164
KEGG:cal:CaO19.3796 Uniprot:Q5A694
Length = 611
Score = 118 (46.6 bits), Expect = 0.00045, P = 0.00045
Identities = 65/208 (31%), Positives = 95/208 (45%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH- 159
ERLE+ GDS+LN L T F +P+ G L+++RS V+ + L ++A + G K LR
Sbjct: 275 ERLEFYGDSILNNLATLIIFKEFPDSTEGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSR 334
Query: 160 -NKPLL---EEQI-REFSEAILDYPLHSNG--LVDAPKVLADIVESTIGAVFID-CNSSI 211
+ +L +++I + EA + G L D + LA + I + I+ I
Sbjct: 335 ISDDVLKTGDKKIFADVFEAYIGALAMERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPI 394
Query: 212 DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK-LKVKFVDLWKESTAFHIFIEDQL 270
D + K L +I + L HPV Y Q + KF+ + T I +
Sbjct: 395 D---REAKSKLYGLIGQDDL--HPV---YNTLQMGDGIHNKFI---VQCT-----INGEE 438
Query: 271 LGRGAYAPKKEIAHNRAAKDALNNIERL 298
LGRG KE A RAA LNN E L
Sbjct: 439 LGRGTANNLKE-AGLRAAMAGLNNNEVL 465
>UNIPROTKB|Q5A694 [details] [associations]
symbol:RNT1 "Probable ribonuclease III" species:237561
"Candida albicans SC5314" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=TAS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 CGD:CAL0001312 GO:GO:0005737 GO:GO:0046872
GO:GO:0006397 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033
GO:GO:0030422 GO:GO:0016075 GO:GO:0019843 EMBL:AACQ01000057
GO:GO:0006364 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
GO:GO:0003968 RefSeq:XP_717201.1 ProteinModelPortal:Q5A694
STRING:Q5A694 GeneID:3641164 KEGG:cal:CaO19.3796 Uniprot:Q5A694
Length = 611
Score = 118 (46.6 bits), Expect = 0.00045, P = 0.00045
Identities = 65/208 (31%), Positives = 95/208 (45%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH- 159
ERLE+ GDS+LN L T F +P+ G L+++RS V+ + L ++A + G K LR
Sbjct: 275 ERLEFYGDSILNNLATLIIFKEFPDSTEGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSR 334
Query: 160 -NKPLL---EEQI-REFSEAILDYPLHSNG--LVDAPKVLADIVESTIGAVFID-CNSSI 211
+ +L +++I + EA + G L D + LA + I + I+ I
Sbjct: 335 ISDDVLKTGDKKIFADVFEAYIGALAMERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPI 394
Query: 212 DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK-LKVKFVDLWKESTAFHIFIEDQL 270
D + K L +I + L HPV Y Q + KF+ + T I +
Sbjct: 395 D---REAKSKLYGLIGQDDL--HPV---YNTLQMGDGIHNKFI---VQCT-----INGEE 438
Query: 271 LGRGAYAPKKEIAHNRAAKDALNNIERL 298
LGRG KE A RAA LNN E L
Sbjct: 439 LGRGTANNLKE-AGLRAAMAGLNNNEVL 465
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 303 303 0.00097 115 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 63
No. of states in DFA: 607 (65 KB)
Total size of DFA: 214 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.77u 0.09s 27.86t Elapsed: 00:00:01
Total cpu time: 27.78u 0.09s 27.87t Elapsed: 00:00:01
Start: Thu May 9 17:12:34 2013 End: Thu May 9 17:12:35 2013