BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041023
(303 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224064945|ref|XP_002301611.1| predicted protein [Populus trichocarpa]
gi|222843337|gb|EEE80884.1| predicted protein [Populus trichocarpa]
Length = 303
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/257 (71%), Positives = 211/257 (82%), Gaps = 5/257 (1%)
Query: 51 EKAGDESESESLPNANN----LDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEY 105
E + D SE S + LDE EEIL Y+F +K LLEEA T S ++ FSYERLEY
Sbjct: 33 ESSDDRSEVASGKQTTDWVTDLDEVEEILHYKFKSKKLLEEALTHASFSDQCFSYERLEY 92
Query: 106 VGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLE 165
VGDSVLNLL TKEQ+FLYP+LPPG LTRLRSANV+TEKLARVAIK LH+YLRH PLLE
Sbjct: 93 VGDSVLNLLFTKEQYFLYPDLPPGPLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLE 152
Query: 166 EQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM 225
EQIREFS+AILDYPLHSNGLV+ PK LADIVE+ IGAVFID N SID+VWK+FK+LL+P+
Sbjct: 153 EQIREFSQAILDYPLHSNGLVETPKALADIVEAAIGAVFIDSNFSIDVVWKIFKDLLEPI 212
Query: 226 ISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHN 285
IS ETLK HPVTELYEVCQK LKVKFVDLWKE+ AF +FI+DQ +GRG Y KKEIAHN
Sbjct: 213 ISQETLKVHPVTELYEVCQKRNLKVKFVDLWKENMAFDVFIDDQFVGRGTYGLKKEIAHN 272
Query: 286 RAAKDALNNIERLLNEK 302
RAAK+ALNNI ++L+EK
Sbjct: 273 RAAKNALNNIRKILSEK 289
>gi|359485630|ref|XP_002270948.2| PREDICTED: ribonuclease 3-like protein 3-like [Vitis vinifera]
gi|297739192|emb|CBI28843.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/251 (64%), Positives = 194/251 (77%), Gaps = 3/251 (1%)
Query: 50 NEKAGDESES-ESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGD 108
E D ES ES P+ + E+ILGY F NK LLEEA+T SC + FSYERLE++GD
Sbjct: 14 TESCADSYESAESFPSLEGV--EQILGYSFTNKRLLEEAYTHASCQKNQFSYERLEFMGD 71
Query: 109 SVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI 168
SVL+LL+TKEQFFLYP+L PG LTRLRSANV+ EKLARVA+K GLH++LRH KP +E+QI
Sbjct: 72 SVLSLLITKEQFFLYPDLQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQI 131
Query: 169 REFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
EF+EAI +YPLHSNG ++ PKVLAD+VESTIGAVF+DCN S+D VWKVFK LL+PMI P
Sbjct: 132 YEFAEAIKEYPLHSNGQIEVPKVLADVVESTIGAVFVDCNCSVDTVWKVFKGLLEPMIVP 191
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
ETLK HPVTEL E CQK LK++F D W+ +IED GRG Y +K+IA NRAA
Sbjct: 192 ETLKVHPVTELNERCQKRGLKLEFKDSWQRRGDIDFYIEDYFAGRGEYPLRKDIALNRAA 251
Query: 289 KDALNNIERLL 299
K ALNNI+R+L
Sbjct: 252 KAALNNIDRIL 262
>gi|147770295|emb|CAN62473.1| hypothetical protein VITISV_005321 [Vitis vinifera]
Length = 287
Score = 323 bits (829), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 161/251 (64%), Positives = 193/251 (76%), Gaps = 3/251 (1%)
Query: 50 NEKAGDESES-ESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGD 108
E D ES ES P+ + E+ILGY F NK LLEEA+T SC + FSYERLE++GD
Sbjct: 14 TESCADSYESAESFPSLEGV--EQILGYSFTNKRLLEEAYTHASCQKNQFSYERLEFMGD 71
Query: 109 SVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI 168
SVL+LL+TKEQFFLYP+L PG LTRLRSANV+ EKLARVA+K GLH++LRH KP +E+QI
Sbjct: 72 SVLSLLITKEQFFLYPDLQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQI 131
Query: 169 REFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
EF+EAI +YPLHSNG ++ PKVLAD+VESTIGAVF+DCN S+D V KVFK LL+PMI P
Sbjct: 132 YEFAEAIKEYPLHSNGQIEVPKVLADVVESTIGAVFVDCNCSVDTVXKVFKGLLEPMIVP 191
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
ETLK HPVTEL E CQK LK++F D W+ +IED GRG Y +K+IA NRAA
Sbjct: 192 ETLKVHPVTELNERCQKRGLKLEFKDSWQRRGDIDFYIEDYFAGRGEYPLRKDIALNRAA 251
Query: 289 KDALNNIERLL 299
K ALNNI+R+L
Sbjct: 252 KAALNNIDRIL 262
>gi|357462175|ref|XP_003601369.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355490417|gb|AES71620.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 565
Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 158/262 (60%), Positives = 200/262 (76%), Gaps = 7/262 (2%)
Query: 40 ISHLLQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS-CPERFF 98
++H+ +D E + E++S P + + E IL Y F NK LLEEAFT + E
Sbjct: 206 VAHVKED----ETDAETKENDSPPPLHEV--EAILEYEFKNKLLLEEAFTHGTYGAENGL 259
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
SYERLEYVGDSVLNL++TKEQF YP L PG LTRLR+ANV+TEKLARVAIK GLH+YLR
Sbjct: 260 SYERLEYVGDSVLNLMITKEQFQAYPTLAPGHLTRLRAANVDTEKLARVAIKHGLHRYLR 319
Query: 159 HNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVF 218
H KPLL +QI+EF++ I +YPLHSNGL+D PK LADIVESTIGA+F+DC SS++ VWKVF
Sbjct: 320 HKKPLLGDQIQEFTKGIAEYPLHSNGLIDVPKSLADIVESTIGAIFVDCGSSVETVWKVF 379
Query: 219 KELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAP 278
K+LL+P+I P T++ HPVTEL+EVCQK LK++F DLWKE+ + I ++ +G G Y
Sbjct: 380 KKLLEPIIDPNTIQRHPVTELHEVCQKKSLKLQFRDLWKETMRIEVLINEEFVGSGVYGS 439
Query: 279 KKEIAHNRAAKDALNNIERLLN 300
KKEIAHNRAAK+AL N+E++L
Sbjct: 440 KKEIAHNRAAKNALENMEKILG 461
>gi|255589974|ref|XP_002535144.1| dicer-1, putative [Ricinus communis]
gi|223523936|gb|EEF27239.1| dicer-1, putative [Ricinus communis]
Length = 259
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/273 (61%), Positives = 199/273 (72%), Gaps = 34/273 (12%)
Query: 30 MEEAHQEEALISHLLQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFT 89
ME +Q E +I + +D+ E +E+ES P+ + + EEIL Y+F N++LLEEAFT
Sbjct: 1 MEHQNQTETVII-MNKDI---ETELEEAESNQSPSLDGV--EEILKYKFKNRSLLEEAFT 54
Query: 90 DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAI 149
D S P + FSYERLE+VGDSVLNLL TKE +F YPNLPPG+LTRLR+ANV+TEKLARVA+
Sbjct: 55 DSSFPGKCFSYERLEHVGDSVLNLLFTKEHYFKYPNLPPGALTRLRAANVDTEKLARVAV 114
Query: 150 KLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNS 209
K G H++LRH KPLLEEQIREFS+AIL+YPLHSNGLVD PKVLADIVES IGAVFID NS
Sbjct: 115 KHGFHRFLRHKKPLLEEQIREFSQAILEYPLHSNGLVDVPKVLADIVESAIGAVFIDSNS 174
Query: 210 SIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQ 269
S+D VWK K LKVKFVDLW+ES A +FI+DQ
Sbjct: 175 SVDTVWK----------------------------KRNLKVKFVDLWRESMAVDVFIDDQ 206
Query: 270 LLGRGAYAPKKEIAHNRAAKDALNNIERLLNEK 302
L+GRG Y KKEIAHNRAAKDAL+NI R+L +K
Sbjct: 207 LVGRGTYGLKKEIAHNRAAKDALDNIGRILGDK 239
>gi|357462179|ref|XP_003601371.1| Ribonuclease 3-like protein [Medicago truncatula]
gi|355490419|gb|AES71622.1| Ribonuclease 3-like protein [Medicago truncatula]
Length = 322
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 145/239 (60%), Positives = 182/239 (76%), Gaps = 10/239 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
EEILGY F NK LLEEA T + YERLEYVGD+VLNLL+ +EQF YPNL PG
Sbjct: 73 EEILGYEFKNKQLLEEALTHTTYGAEN-DYERLEYVGDAVLNLLMAREQFVSYPNLKPGI 131
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ---------IREFSEAILDYPLH 181
LT+LRS NV++EKLARVAI GL +YLRH KP L EQ I F++AI DYP+H
Sbjct: 132 LTQLRSKNVDSEKLARVAINHGLDRYLRHKKPQLGEQVSLGIGIGQIEAFTKAIEDYPIH 191
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
SNG + PK LAD+VESTIGA+FIDC+SS++IVWKVF++LL+P+I P T++ HPV+EL E
Sbjct: 192 SNGHIHVPKDLADMVESTIGALFIDCDSSLEIVWKVFRKLLEPIIEPNTVEKHPVSELQE 251
Query: 242 VCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN 300
VCQK KL ++FVDLW++S +FI ++ +GRG Y KK+IAH RAAK+AL+NIER+L+
Sbjct: 252 VCQKKKLNLQFVDLWEKSMNIDVFINEKFVGRGTYGSKKDIAHYRAAKNALDNIERVLS 310
>gi|449493233|ref|XP_004159229.1| PREDICTED: ribonuclease 3-like protein 3-like [Cucumis sativus]
Length = 275
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/227 (63%), Positives = 179/227 (78%), Gaps = 3/227 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E IL Y F +K LLEEAFTD S PE S+ERLEYVGDSVLN L+T+EQ+F PNL PG
Sbjct: 38 EAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPG 97
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
SLTRLR+ANV+TEKLARVAI G H+YLRHNK L ++I EF +I +YPLHSNG++ AP
Sbjct: 98 SLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKIEEFGRSIEEYPLHSNGMIKAP 157
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
KVLADIVESTIGAVF D N SID VWK+FKEL++P+I+ +T+K HP+TEL E+CQK LK
Sbjct: 158 KVLADIVESTIGAVFADSN-SIDTVWKIFKELMEPLITLKTMKKHPMTELTEMCQKRSLK 216
Query: 250 VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
++F D W+E+ + IE Q++G+G+Y KK IA NRAAK+AL N++
Sbjct: 217 LEFRDRWEETKEIEVLIEKQVVGKGSYR-KKLIAQNRAAKNALENLD 262
>gi|357462157|ref|XP_003601360.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355490408|gb|AES71611.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 783
Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 140/228 (61%), Positives = 173/228 (75%), Gaps = 1/228 (0%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E IL Y F N LLEEAFT + E SYERLEY+GDSVLNL++T EQF YP L PG
Sbjct: 448 EAILEYEFKNILLLEEAFTHCTYGAENGLSYERLEYIGDSVLNLMITTEQFHAYPTLAPG 507
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LTRLR+ANV+TEKLARVAIK GLH+Y+RH KPLL ++I+ F + +++YPLHSNGL+D P
Sbjct: 508 HLTRLRAANVDTEKLARVAIKYGLHRYVRHKKPLLGDEIQAFIKEVVEYPLHSNGLIDVP 567
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
K+LADIVESTIGA+F+DC SSI+ VWK FK+LL P+I P T++ HP EL E CQK LK
Sbjct: 568 KILADIVESTIGAIFVDCGSSIETVWKFFKKLLVPVIDPHTIQRHPSAELNEFCQKRGLK 627
Query: 250 VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
++F DLWK S + I ++L+G G KKEIAHNRAAK+AL ++R
Sbjct: 628 LQFRDLWKVSEIVEVLISEELVGSGKCGSKKEIAHNRAAKNALEYMKR 675
>gi|449453708|ref|XP_004144598.1| PREDICTED: ribonuclease 3-like protein 3-like [Cucumis sativus]
Length = 275
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/227 (62%), Positives = 178/227 (78%), Gaps = 3/227 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E IL Y F +K LLEEAFTD S PE S+ERLEYVGDSVLN L+T+EQ+F PNL PG
Sbjct: 38 EAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPG 97
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
SLTRLR+ANV+TEKLARVAI G H+YLRHNK L ++I EF +I +YPLHSNG++ AP
Sbjct: 98 SLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKIEEFGRSIEEYPLHSNGMIKAP 157
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
KVLADIVESTIGAVF D N ID VWK+FKEL++P+I+ +T+K HP+TEL E+CQK LK
Sbjct: 158 KVLADIVESTIGAVFADSN-FIDTVWKIFKELMEPLITLKTMKKHPMTELTEMCQKRSLK 216
Query: 250 VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
++F D W+E+ + IE Q++G+G+Y KK IA NRAAK+AL N++
Sbjct: 217 LEFRDRWEETKEIEVLIEKQVVGKGSYR-KKLIAQNRAAKNALENLD 262
>gi|240255863|ref|NP_680697.4| protein RNAse II-like 1 [Arabidopsis thaliana]
gi|332658200|gb|AEE83600.1| protein RNAse II-like 1 [Arabidopsis thaliana]
Length = 264
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 125/232 (53%), Positives = 167/232 (71%), Gaps = 2/232 (0%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+IL Y+F +K+LL +AFTD S ++ SYE LE +GDS+LN+ + + LYP PG
Sbjct: 33 EKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLYPKEAPG 92
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT+LR+ NV+TEKLARVA+ L+ YLRH KPLLEEQI EF EA+ YPLHSNGL+ P
Sbjct: 93 PLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSNGLLKVP 152
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
KVLADIVESTIGA+F+DCNS+ + VWKV K LL+P+I + +K+HP+TEL E+CQK LK
Sbjct: 153 KVLADIVESTIGAIFMDCNST-ETVWKVIKPLLEPIIHLDKMKSHPMTELNEMCQKRNLK 211
Query: 250 VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNE 301
+ D W+E+ + IED+ +G G + KKE A N AAK+A++N + +
Sbjct: 212 LTSKDTWEENQTYCFHIEDKFVGCGHHPVKKETARNFAAKNAIDNFAKFFGD 263
>gi|115468004|ref|NP_001057601.1| Os06g0358800 [Oryza sativa Japonica Group]
gi|75254269|sp|Q69KJ0.1|RTL3_ORYSJ RecName: Full=Ribonuclease 3-like protein 3; AltName:
Full=Ribonuclease III-like protein 3; Short=RNase
III-like protein 3
gi|51091751|dbj|BAD36550.1| CAF protein-like [Oryza sativa Japonica Group]
gi|113595641|dbj|BAF19515.1| Os06g0358800 [Oryza sativa Japonica Group]
gi|125597181|gb|EAZ36961.1| hypothetical protein OsJ_21299 [Oryza sativa Japonica Group]
Length = 299
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 165/237 (69%), Gaps = 4/237 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPER-FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +LGY F +K L+EEA T S P R +YERLEY+GD+VL ++++E F Y L
Sbjct: 43 ESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQ 102
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
PG LTRLR+ANV+ EKLARVA+ GLH +LRH P L+ QI +F E + YP+HSNGL+D
Sbjct: 103 PGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHSNGLLD 162
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
PKVL D+VES IGA++ D N + +IVW+VF++L P+IS ETL HPV+EL+E CQK +
Sbjct: 163 PPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQKTR 222
Query: 248 LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNEKR 303
VK V D W ++ + I+ +++GR YA KKEIA NRAAK AL+ ++ L + +
Sbjct: 223 RGVKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLKETLGQSQ 279
>gi|242078881|ref|XP_002444209.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
gi|241940559|gb|EES13704.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
Length = 291
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 124/235 (52%), Positives = 162/235 (68%), Gaps = 4/235 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +LGY F +K+L+E A T S P R +YERLEY+GD VL L+++E F Y LP
Sbjct: 31 EAVLGYEFADKSLVELALTHGSFYFPYRPGDTYERLEYLGDGVLTCLMSREVFRNYRTLP 90
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
PG LTRLR+ANV+TEKLARVA+ GLH++LRH P L++QI F E + YP+HSNGL+D
Sbjct: 91 PGPLTRLRAANVDTEKLARVAVDRGLHRFLRHKAPKLQDQICLFIEEMRKYPVHSNGLLD 150
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
PKVL DIVES IGA++ D + + + VW+VF+ L P+I ETL HPVTEL+E CQK +
Sbjct: 151 PPKVLCDIVESLIGAIYWDSDFNQEEVWRVFRTLADPLIGLETLGKHPVTELFEFCQKTR 210
Query: 248 LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNE 301
VKFV D W +S + I+ +L+ Y PKKEIA NRAAK AL+ ++ L +
Sbjct: 211 RGVKFVKDEWDKSLKVEVLIDGELVASATYGPKKEIAQNRAAKAALDKLKETLGQ 265
>gi|357118011|ref|XP_003560753.1| PREDICTED: ribonuclease 3-like protein 3-like [Brachypodium
distachyon]
Length = 296
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 163/234 (69%), Gaps = 5/234 (2%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +LGY F +K+L+ EA T S P +YERLEY+GD VL L+++E F Y +L
Sbjct: 42 ETLLGYEFGDKSLVGEALTHGSYYYPYPPGDSTYERLEYLGDGVLTCLMSREVFLTYRSL 101
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
PPG LTRLR+ANV+ EKLARVA++ G+H++LRH P L+ QI +F + + Y HSNGL+
Sbjct: 102 PPGPLTRLRAANVDKEKLARVAVEHGIHRFLRHKAPQLDGQIDDFIKELCKYKYHSNGLL 161
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
DAPKVL+DIVES IGA+++D N + ++VW+VF+ L P+IS ETL HPV+EL E CQK
Sbjct: 162 DAPKVLSDIVESLIGAIYLDSNFNQEVVWRVFRNLADPLISLETLGKHPVSELLEFCQKT 221
Query: 247 KLKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+ ++FV D W + + ++ +LLG YA KKEIA NRAAK AL+ ++ L
Sbjct: 222 RRGLQFVKDGWDKHLKVDVLVDGELLGTATYAQKKEIAQNRAAKAALDKLKETL 275
>gi|125555283|gb|EAZ00889.1| hypothetical protein OsI_22916 [Oryza sativa Indica Group]
Length = 276
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/234 (51%), Positives = 163/234 (69%), Gaps = 4/234 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPER-FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +LGY F +K L+E+A T S P R +YERLEY+GD+VL ++++E F Y L
Sbjct: 43 ESLLGYEFRDKALVEQALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQ 102
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
PG LTRLR+ANV+ EKLARVA+ GLH +LRH P L+ QI +F E + YP+HSNGL+D
Sbjct: 103 PGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHSNGLLD 162
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
PKVL D+VES IGA++ D N + +IVW+VF++L P+IS ETL HPV+EL+E CQK +
Sbjct: 163 PPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQKTR 222
Query: 248 LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN 300
VK V D W ++ + I+ +++GR YA KKEIA NRAAK AL+ ++ L
Sbjct: 223 RGVKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLKETLG 276
>gi|226528435|ref|NP_001141713.1| uncharacterized protein LOC100273842 [Zea mays]
gi|194705648|gb|ACF86908.1| unknown [Zea mays]
gi|414870636|tpg|DAA49193.1| TPA: endoribonuclease Dicer [Zea mays]
Length = 329
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 160/230 (69%), Gaps = 4/230 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPER-FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +LGY F +K+L+E A T S P R +YERLEY+GD VL L+++E F Y L
Sbjct: 52 EALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSREVFRTYRTLQ 111
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
PG LTRLR+ANV+TEKLARVA+ GLH++LRH P L++QI F E + YP+HSNGL+D
Sbjct: 112 PGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQICFFIEEMRKYPVHSNGLLD 171
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
PKVL DIVES IGA+++D N + VW+VF+ L P+I ETL HPV+EL+E CQK
Sbjct: 172 PPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSELFEFCQKTH 231
Query: 248 LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
VKF+ D W +S + I+ +++G Y PKKEIA NRAAKDAL+ ++
Sbjct: 232 RGVKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDALDKLK 281
>gi|195624966|gb|ACG34313.1| endoribonuclease Dicer [Zea mays]
Length = 329
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/230 (52%), Positives = 160/230 (69%), Gaps = 4/230 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPER-FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +LGY F +K+L+E A T S P R +YERLEY+GD VL L+++E F Y L
Sbjct: 52 EALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSREVFRTYRTLQ 111
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
PG LTRLR+ANV+TEKLARVA+ GL+++LRH P L++QI F E + YP+HSNGL+D
Sbjct: 112 PGPLTRLRAANVDTEKLARVAVHRGLYRFLRHKAPKLQDQICFFIEEMRKYPVHSNGLLD 171
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
PKVL DIVES IGA+++D N + VW+VF+ L P+I ETL HPV+EL+E CQK
Sbjct: 172 PPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSELFEFCQKTH 231
Query: 248 LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
VKF+ D W +S + I+ +++G Y PKKEIA NRAAKDAL+ ++
Sbjct: 232 RGVKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDALDKLK 281
>gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group]
Length = 1883
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 150/246 (60%), Gaps = 18/246 (7%)
Query: 60 ESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
ES+ + N D + +LG F NK LL EA T S P S Y+RLE+VGD+VL+ L+T+
Sbjct: 1530 ESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITR 1589
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----SE 173
FF Y +LPPG LT LR+A VN E ARVA+K LH +LRH LE QIREF E
Sbjct: 1590 HLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQE 1649
Query: 174 AILDYPLHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
+L +S GL D APKVL DIVES GA+F+D +VWKVF+ LL PM++PETL
Sbjct: 1650 ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETL 1709
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHI-----FIEDQLLGRGAYAPKKEIAHNR 286
HPV EL E CQ+ +++ K S A +I F++ +G A P+K++A
Sbjct: 1710 PMHPVRELQERCQQQAEGLEY----KASRAGNIATVEVFVDGVQIGV-AQNPQKKMAQKL 1764
Query: 287 AAKDAL 292
AA++AL
Sbjct: 1765 AARNAL 1770
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 40/173 (23%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++I+ Y +LE A T SC E YER E +GD+ L ++++ F YP G
Sbjct: 1325 KDIIDYPVPATKILE-ALTAASCQETL-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1382
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD- 177
LTR+R V+ L + A+ L Y++ ++ P+ +E+ RE+ +I D
Sbjct: 1383 LTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDE 1442
Query: 178 -----------YPLHSNGL--------------VDAPKVLADIVESTIGAVFI 205
Y +++ + V + K LAD+VE+ IG ++
Sbjct: 1443 ESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 1495
>gi|75330224|sp|Q8LMR2.1|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
Full=Dicer-like protein 1; Short=OsDCL1
gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group]
gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza
sativa Japonica Group]
Length = 1883
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 150/246 (60%), Gaps = 18/246 (7%)
Query: 60 ESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
ES+ + N D + +LG F NK LL EA T S P S Y+RLE+VGD+VL+ L+T+
Sbjct: 1530 ESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITR 1589
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----SE 173
FF Y +LPPG LT LR+A VN E ARVA+K LH +LRH LE QIREF E
Sbjct: 1590 HLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQE 1649
Query: 174 AILDYPLHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
+L +S GL D APKVL DIVES GA+F+D +VWKVF+ LL PM++PETL
Sbjct: 1650 ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETL 1709
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHI-----FIEDQLLGRGAYAPKKEIAHNR 286
HPV EL E CQ+ +++ K S A +I F++ +G A P+K++A
Sbjct: 1710 PMHPVRELQERCQQQAEGLEY----KASRAGNIATVEVFVDGVQIGV-AQNPQKKMAQKL 1764
Query: 287 AAKDAL 292
AA++AL
Sbjct: 1765 AARNAL 1770
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 40/173 (23%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++I+ Y +LE A T SC E YER E +GD+ L ++++ F YP G
Sbjct: 1325 KDIIDYPVPATKILE-ALTAASCQETL-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1382
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD- 177
LTR+R V+ L + A+ L Y++ ++ P+ +E+ RE+ +I D
Sbjct: 1383 LTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDE 1442
Query: 178 -----------YPLHSNGL--------------VDAPKVLADIVESTIGAVFI 205
Y +++ + V + K LAD+VE+ IG ++
Sbjct: 1443 ESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 1495
>gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group]
Length = 1883
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 150/246 (60%), Gaps = 18/246 (7%)
Query: 60 ESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
ES+ + N D + +LG F NK LL EA T S P S Y+RLE+VGD+VL+ L+T+
Sbjct: 1530 ESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITR 1589
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----SE 173
FF Y +LPPG LT LR+A VN E ARVA+K LH +LRH LE QIREF E
Sbjct: 1590 HLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQE 1649
Query: 174 AILDYPLHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
+L +S GL D APKVL DIVES GA+F+D +VWKVF+ LL PM++PETL
Sbjct: 1650 ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETL 1709
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHI-----FIEDQLLGRGAYAPKKEIAHNR 286
HPV EL E CQ+ +++ K S A +I F++ +G A P+K++A
Sbjct: 1710 PMHPVRELQERCQQQAEGLEY----KASRAGNIATVEVFVDGVQIGV-AQNPQKKMAQKL 1764
Query: 287 AAKDAL 292
AA++AL
Sbjct: 1765 AARNAL 1770
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 40/173 (23%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++I+ Y +LE A T SC E F YER E +GD+ L ++++ F YP G
Sbjct: 1325 KDIIDYPVPATKILE-ALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1382
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD- 177
LTR+R V+ L + A+ L Y++ ++ P+ +E+ RE+ +I D
Sbjct: 1383 LTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDE 1442
Query: 178 -----------YPLHSNGL--------------VDAPKVLADIVESTIGAVFI 205
Y +++ + V + K LAD+VE+ IG ++
Sbjct: 1443 ESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 1495
>gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis]
gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis]
Length = 342
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 151/236 (63%), Gaps = 10/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NK L+EEA T S +Y+RLE++GD+ L L L+ F YP+L PG
Sbjct: 11 EKILNYTFKNKQLVEEALTHSSYTASP-NYQRLEFIGDAALGLALSNHVFLAYPDLDPGH 69
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---DYPLHSNGLVD 187
L+ LR+AN++TEKLARVA+K GL ++LRHN L+++++EFS+A+L D + G V
Sbjct: 70 LSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEFSDAVLREEDEAVAHGGTVK 129
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQK 245
APKVLADIVES AV++D N + +W +F+ LL+P+++PE L+ P+T L+E+CQK
Sbjct: 130 APKVLADIVESVAAAVYVDVNFDLQRLWVIFRGLLEPIVTPEDLQQQPQPMTMLFELCQK 189
Query: 246 NKLKVKFVDLWKESTA--FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+V V WK T I+++ + G+ + +KE A AAK AL + L+
Sbjct: 190 KGKEVDIVH-WKSGTKNIASIYVDGGFVASGS-SEQKETAKLNAAKGALQKLSHLM 243
>gi|357114316|ref|XP_003558946.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Brachypodium
distachyon]
Length = 1888
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 146/242 (60%), Gaps = 10/242 (4%)
Query: 60 ESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
+S+ + N D E I+G +F NK L EA T S P S Y+RLE+VGD+VL+ L+TK
Sbjct: 1535 DSIMRSINFDTLESIMGIKFQNKGFLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITK 1594
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----SE 173
FF Y +LPPG LT LR+A VN E ARVA+K LH +LRH LE QIREF E
Sbjct: 1595 HLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVRE 1654
Query: 174 AILDYPLHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
I +S GL D APKVL DI+ES GA+F+D VWKVF+ LL PM++PETL
Sbjct: 1655 EISKSGFNSFGLGDCKAPKVLGDIIESIAGAIFLDSGYDTSAVWKVFQPLLDPMVTPETL 1714
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
HP+ EL E CQ+ +++ + A +F++ +G A P+K++A AA++
Sbjct: 1715 PMHPIRELQERCQQQAEGLEYKASRAGNVATVEVFVDGIQIGV-AQNPQKKMAQKLAARN 1773
Query: 291 AL 292
AL
Sbjct: 1774 AL 1775
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 41/174 (23%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+EI+ Y +LE A T SC E F YER E +GD+ L ++++ F YP G
Sbjct: 1329 KEIIDYPVPATKILE-ALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1386
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNK------------PLLEEQIREFSEAIL-- 176
LTR+R V+ L + A+ L Y++ ++ P+ +E+ RE +I
Sbjct: 1387 LTRMRQQMVSNMVLYQFALNKTLQSYIQADRFAPSRWAAPGVLPVFDEETRESEPSIFGE 1446
Query: 177 --------------DYP--LHSNGLVD---------APKVLADIVESTIGAVFI 205
DY + +G +D + K LAD+VE+ IG ++
Sbjct: 1447 EPVLGNEVQKDFDDDYADSIQEDGEIDGDSGCYRVLSSKTLADVVEALIGVYYV 1500
>gi|225453660|ref|XP_002268369.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Vitis vinifera]
Length = 1971
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 149/242 (61%), Gaps = 10/242 (4%)
Query: 60 ESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
ES+ + N D E L +FNN+ LL EA T S P S Y+RLE+VGD+VL+ L+T+
Sbjct: 1624 ESILRSVNFDTLEGALNIKFNNRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITR 1683
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD 177
FF Y +LPPG LT LR+A VN E ARVA+K LH +LRH LE+QIR+F + + D
Sbjct: 1684 HLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIHLRHGSSALEKQIRDFVKEVQD 1743
Query: 178 Y----PLHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
+S GL D APKVL DIVES GA+F+D +VWKVF+ LL PM++PETL
Sbjct: 1744 ELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETL 1803
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
HPV EL E CQ+ +++ + A +FI+ +G A P+K++A AA++
Sbjct: 1804 PMHPVRELQERCQQQAEGLEYKATRSGNLATVEVFIDGVQIGI-AQNPQKKMAQKLAARN 1862
Query: 291 AL 292
AL
Sbjct: 1863 AL 1864
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 42/162 (25%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1429 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 1487
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILDY--PL---------HS 182
+ A+ GL Y++ ++ P+ +E +E ++ D+ P H
Sbjct: 1488 QSALCKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKETESSLFDHERPFSETAPGNDRHG 1547
Query: 183 NGLVD------------------APKVLADIVESTIGAVFID 206
+G D + K LAD+VE+ IG +++
Sbjct: 1548 DGYDDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVE 1589
>gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera]
Length = 337
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 157/240 (65%), Gaps = 15/240 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E I+ Y+F NK LLEEA T S + SY+RLE++GD+ L L+ F YP+L PG
Sbjct: 9 ERIINYKFRNKKLLEEALTHSSYTDSA-SYQRLEFIGDAALGCALSNYVFLAYPSLDPGQ 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---DYPLHSNGLVD 187
L+ +R+AN++TEKLARVA+++GL++Y+RHN L++++REF+ A+ D L+ G V
Sbjct: 68 LSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLY-GGSVK 126
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQK 245
APK LADIVES A+++DCN + ++W +F+ LL+P+++ E L+ PVT LYE+CQK
Sbjct: 127 APKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPVTLLYELCQK 186
Query: 246 NKLKVKFVDL--WKESTA--FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNE 301
+ K VD+ W++ + +++ + + G+ + +KEIA AAK+AL + L +
Sbjct: 187 DG---KHVDIKHWRKGSKNIASVYVGGKFIASGS-SDEKEIAKLNAAKEALQKLSSKLKD 242
>gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa]
gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa]
Length = 1817
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 143/230 (62%), Gaps = 9/230 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L +FN++ LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y NLPPG
Sbjct: 1527 EGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPG 1586
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL----HSNGL 185
LT LR+A VN E ARVA+K LH +LRH LE+QIR+F + D L +S GL
Sbjct: 1587 RLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQDELLKPVFNSFGL 1646
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D +VWKVF+ LL PM++PETL HPV EL E C
Sbjct: 1647 GDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERC 1706
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
Q+ +++ + A +FI+ +G A P+K++A AA++AL
Sbjct: 1707 QQQAEGLEYKATRSGNLATVEVFIDGVQVGV-AQNPQKKMAQKLAARNAL 1755
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 42/176 (23%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++I+ Y +LE A T SC E F YER E +GD+ L ++++ F YP G
Sbjct: 1307 KDIINYPVPASKILE-ALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1364
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNK------------PLLEEQIRE-------- 170
LTR+R V+ L + A+ GL Y++ ++ P+ +E+ ++
Sbjct: 1365 LTRMRQQMVSNMVLYQYALNKGLQSYIQADRFAPSRWAAPGVLPVFDEETKDGDSYIFDQ 1424
Query: 171 -----------------FSEAILDYPLHSNG---LVDAPKVLADIVESTIGAVFID 206
+ I D L S+ V + K LAD+VE+ IG +++
Sbjct: 1425 EKSLAEDRTGMNHLDDGYENEIEDGELESDASSYRVLSSKTLADVVEALIGVYYVE 1480
>gi|225460893|ref|XP_002278706.1| PREDICTED: ribonuclease 3-like protein 2-like [Vitis vinifera]
Length = 364
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 157/240 (65%), Gaps = 15/240 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E I+ Y+F NK LLEEA T S + SY+RLE++GD+ L L+ F YP+L PG
Sbjct: 36 ERIINYKFRNKKLLEEALTHSSYTDSA-SYQRLEFIGDAALGCALSNYVFLAYPSLDPGQ 94
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---DYPLHSNGLVD 187
L+ +R+AN++TEKLARVA+++GL++Y+RHN L++++REF+ A+ D L+ G V
Sbjct: 95 LSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLY-GGSVK 153
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQK 245
APK LADIVES A+++DCN + ++W +F+ LL+P+++ E L+ PVT LYE+CQK
Sbjct: 154 APKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPVTLLYELCQK 213
Query: 246 NKLKVKFVDL--WKESTA--FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNE 301
+ K VD+ W++ + +++ + + G+ + +KEIA AAK+AL + L +
Sbjct: 214 DG---KHVDIKHWRKGSKNIASVYVGGKFIASGS-SDEKEIAKLNAAKEALQKLSSKLKD 269
>gi|414864448|tpg|DAA43005.1| TPA: hypothetical protein ZEAMMB73_941906 [Zea mays]
Length = 1307
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 146/241 (60%), Gaps = 8/241 (3%)
Query: 60 ESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
ES+ + N D E LG +F NK LL EA T S P S Y+RLE+VGD+VL+ L+TK
Sbjct: 957 ESIIKSINFDTLEGALGIKFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITK 1016
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-- 175
FF Y +LPPG LT LR+A VN E ARVA+K LH +LRH LE QIREF + +
Sbjct: 1017 HLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQE 1076
Query: 176 -LDYP-LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
L P +S GL D APKVL DI ES GA+F+D + +VWKVF+ LL PM++P+TL
Sbjct: 1077 ELSKPGFNSFGLGDCKAPKVLGDIFESIAGAIFLDSGCATSVVWKVFQPLLDPMVTPDTL 1136
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
HPV EL E CQ+ +++ + A + D + A P+K++A AA++A
Sbjct: 1137 PMHPVRELQERCQQQAEGLEYKASRTGNVATVEVLVDGIQIGVAQNPQKKMAQKLAARNA 1196
Query: 292 L 292
L
Sbjct: 1197 L 1197
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 42/175 (24%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++I+GY +LE A T SC E F YER E +GD+ L ++++ F YP G
Sbjct: 750 KDIIGYPVPANKILE-ALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 807
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILDY 178
LTR+R V+ L + A+ L Y++ ++ P+ +E+ R+ +I D
Sbjct: 808 LTRMRQQMVSNMILYQYALNKNLQSYIQADRFAPSRWAAPGVLPVFDEETRDSEPSIFDE 867
Query: 179 -------------------PLHSNGLVDA---------PKVLADIVESTIGAVFI 205
+ +G ++ K LAD+VE+ IG ++
Sbjct: 868 EFTPSSELQKNLYDDYDGDSMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 922
>gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
lyrata]
gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
lyrata]
Length = 391
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 157/236 (66%), Gaps = 10/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y+F NK+LL+EA T SC + F SYERLE+VGDS + L ++ + YP+L P
Sbjct: 64 EKILNYKFKNKSLLKEAITHTSCTD-FPSYERLEFVGDSAIGLAISNYLYLTYPSLEPHQ 122
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---DYPLHSNGLVD 187
L+ LR+ANV+TEKLARV + GL+++LR N P L+E+++EFS+A+ D+ + GLV
Sbjct: 123 LSLLRAANVSTEKLARVTLNHGLYQFLRRNAPSLDEKVKEFSDAVGKEDDFSVAYGGLVK 182
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQK 245
APKVLAD+ ES GAV++D N + +W +F+ LL+P+++ + L+ PV+ L+++C K
Sbjct: 183 APKVLADLFESVAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHK 242
Query: 246 NKLKVKFVDLWKES--TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+K ++ + WK+ + I+++D+ L G A K+IA AAK+AL + +
Sbjct: 243 HKKRIDIKN-WKDGNISIADIYLDDEFLASGR-AENKDIARLIAAKEALRKLSEVF 296
>gi|18402610|ref|NP_566661.1| RNAse THREE-like protein 2 [Arabidopsis thaliana]
gi|75274109|sp|Q9LTQ0.1|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName:
Full=Ribonuclease III-like protein 2; Short=RNase
III-like protein 2; AltName: Full=Ribonuclease
three-like protein 2
gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana]
gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana]
Length = 391
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 158/236 (66%), Gaps = 10/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y+F+NK+LL+EA T SC + F SYERLE++GDS + L ++ + YP+L P
Sbjct: 64 EKILNYKFSNKSLLKEAITHTSCTD-FPSYERLEFIGDSAIGLAISNYLYLTYPSLEPHD 122
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---DYPLHSNGLVD 187
L+ LR+ANV+TEKLARV++ GL+ +LR N P L+E+++EFSEA+ D + GLV
Sbjct: 123 LSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGLVK 182
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQK 245
APKVLAD+ ES GAV++D N + +W +F+ LL+P+++ + L+ PV+ L+++C K
Sbjct: 183 APKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHK 242
Query: 246 NKLKVKFVDLWKES--TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+K ++ + WK+ + I+++D+LL G A K+IA AAK+AL + +
Sbjct: 243 HKKRIDIKN-WKDGNVSIAVIYLDDELLASGR-AENKDIARLIAAKEALRKLSEVF 296
>gi|17511264|gb|AAK68755.2| Unknown protein [Arabidopsis thaliana]
gi|20148705|gb|AAM10243.1| unknown protein [Arabidopsis thaliana]
Length = 391
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 158/236 (66%), Gaps = 10/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y+F+NK+LL+EA T SC + F SYERLE++GDS + L ++ + YP+L P
Sbjct: 64 EKILNYKFSNKSLLKEAVTHTSCTD-FPSYERLEFIGDSAIGLAISNYLYLTYPSLEPHD 122
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---DYPLHSNGLVD 187
L+ LR+ANV+TEKLARV++ GL+ +LR N P L+E+++EFSEA+ D + GLV
Sbjct: 123 LSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGLVK 182
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQK 245
APKVLAD+ ES GAV++D N + +W +F+ LL+P+++ + L+ PV+ L+++C K
Sbjct: 183 APKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHK 242
Query: 246 NKLKVKFVDLWKES--TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+K ++ + WK+ + I+++D+LL G A K+IA AAK+AL + +
Sbjct: 243 HKKRIDIKN-WKDGNVSIAVIYLDDELLASGR-AENKDIARLIAAKEALRKLSEVF 296
>gi|449432976|ref|XP_004134274.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Cucumis sativus]
Length = 1986
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 144/231 (62%), Gaps = 11/231 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L +F ++ LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1651 EGALNIKFQDRGLLVEAITHASRPSCGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPG 1710
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL----HSNGL 185
LT LR+A VN E ARVA+K LH +LRH LE+QIR+F + + D L +S GL
Sbjct: 1711 RLTDLRAAAVNNENFARVAVKHNLHIHLRHGSSALEKQIRDFVKEVQDELLKPGFNSFGL 1770
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D +VW+VF+ LL PM++PETL HPV EL E C
Sbjct: 1771 GDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWRVFQPLLHPMVTPETLPMHPVRELQERC 1830
Query: 244 QKN--KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
Q+ L+ K + +T +FI+ +G A P+K++A AA++AL
Sbjct: 1831 QQQAEGLEYKATRIGNLATV-EVFIDGVQIGI-AQNPQKKMAQKLAARNAL 1879
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 42/162 (25%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1444 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQQMVSNMVLY 1502
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREF-----------SEAILDYPLH- 181
+ A+ L Y++ ++ P+ +E +++ S+ + + LH
Sbjct: 1503 QYALSKKLQSYIQADRFAPSRWAAPGVLPVYDEDMKDGESSFFDQDKSNSDGVSEMDLHL 1562
Query: 182 -----------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 1563 DVFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVE 1604
>gi|449478272|ref|XP_004155270.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1-like
[Cucumis sativus]
Length = 1987
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 144/231 (62%), Gaps = 11/231 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L +F ++ LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1652 EGALNIKFQDRGLLVEAITHASRPSCGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPG 1711
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL----HSNGL 185
LT LR+A VN E ARVA+K LH +LRH LE+QIR+F + + D L +S GL
Sbjct: 1712 RLTDLRAAAVNNENFARVAVKHNLHIHLRHGSSALEKQIRDFVKEVQDELLKPGFNSFGL 1771
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D +VW+VF+ LL PM++PETL HPV EL E C
Sbjct: 1772 GDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWRVFQPLLHPMVTPETLPMHPVRELQERC 1831
Query: 244 QKN--KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
Q+ L+ K + +T +FI+ +G A P+K++A AA++AL
Sbjct: 1832 QQQAEGLEYKATRIGNLATV-EVFIDGVQIGI-AQNPQKKMAQKLAARNAL 1880
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 42/162 (25%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1445 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQQMVSNMVLY 1503
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREF-----------SEAILDYPLH- 181
+ A+ L Y++ ++ P+ +E +++ S+ + + LH
Sbjct: 1504 QYALSKKLQSYIQADRFAPSRWAAPGVLPVYDEDMKDGESSFFDQDKSNSDGVSEMDLHL 1563
Query: 182 -----------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 1564 DVFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVE 1605
>gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis]
gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis]
Length = 1543
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 140/230 (60%), Gaps = 9/230 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L +F ++ LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y NLPPG
Sbjct: 1208 EGALNIKFQDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPG 1267
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY----PLHSNGL 185
LT LR+A VN E ARVA+ LH +LRH LE+QIR+F + D +S GL
Sbjct: 1268 RLTDLRAAAVNNENFARVAVNHKLHVHLRHGSSALEKQIRDFVREVQDELSKPGFNSFGL 1327
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D +VWKVF+ LL PM++PETL HPV EL E C
Sbjct: 1328 GDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERC 1387
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
Q+ +++ + A +FI+ +G A P+K++A AA++AL
Sbjct: 1388 QQQAEGLEYKATRSGNLATVEVFIDGVQVGV-AQNPQKKMAQKLAARNAL 1436
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1001 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 1059
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD 177
+ A+ GL Y++ ++ P+ +E ++ ++ D
Sbjct: 1060 QYALIKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFD 1103
>gi|357462181|ref|XP_003601372.1| Ribonuclease 3-like protein [Medicago truncatula]
gi|355490420|gb|AES71623.1| Ribonuclease 3-like protein [Medicago truncatula]
Length = 258
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 109/138 (78%)
Query: 163 LLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
+ + I F++AI +YP+HSNG + PK LADIVESTIGA+FIDCNSS++IVWK+F++LL
Sbjct: 109 ITDTSIEAFTKAIEEYPIHSNGHIGVPKDLADIVESTIGALFIDCNSSLEIVWKIFRKLL 168
Query: 223 KPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEI 282
+P+I P+ + HP+TEL EVCQK KL ++FVDLWKES +FI ++ +GRG Y KK+I
Sbjct: 169 EPIIEPDAFEMHPLTELTEVCQKKKLNLQFVDLWKESMNIDVFINEKFVGRGTYGSKKDI 228
Query: 283 AHNRAAKDALNNIERLLN 300
A RAAK+ALNNIE +L+
Sbjct: 229 ARYRAAKNALNNIESVLS 246
>gi|356552945|ref|XP_003544820.1| PREDICTED: ribonuclease 3-like protein 2-like [Glycine max]
Length = 345
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 152/237 (64%), Gaps = 13/237 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E IL YRF NK LLEEA T S + SYERLE+VGD VL+L ++ F YP+L PG
Sbjct: 10 ENILRYRFRNKKLLEEALTHSSFLDGV-SYERLEFVGDPVLSLAISNYLFLAYPDLDPGQ 68
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-LDY-PLHSNGLVDA 188
L+ LR+ANV+TEKLARVA+++GLH+++RH+ P L +++ F +A+ L+ P+ G V A
Sbjct: 69 LSALRAANVSTEKLARVAVRIGLHRFVRHSAPPLVDKVERFVDAVKLEINPVAHGGSVKA 128
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYEVCQKN 246
PKVLAD+VES A+++D N + +W + + +L+P+++P+ L + PVT LYE+CQK
Sbjct: 129 PKVLADVVESVAAAIYVDVNFDLQTLWVIMRGVLEPIVTPDALEKQPQPVTMLYEMCQK- 187
Query: 247 KLKVKFVDLWKES----TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
K K VD+ + +F++ + + A + +K+ A AAK AL + L+
Sbjct: 188 --KGKQVDIKPSREGDLSVAKVFVDGEFVA-SASSSQKDHAKLEAAKIALGKLAHLV 241
>gi|374259482|gb|AEZ02177.1| Dicer [Arabidopsis thaliana]
Length = 1886
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 134/222 (60%), Gaps = 9/222 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L Y F K LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1540 ERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPG 1599
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNGL 185
LT LR+A VN E ARVA+K LH YLRH LE+QIREF + + +S GL
Sbjct: 1600 RLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGL 1659
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D WKVF+ LL+PM++PETL HPV EL E C
Sbjct: 1660 GDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERC 1719
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAH 284
Q+ +++ +TA +FI+ +G A P+K++A
Sbjct: 1720 QQQAEGLEYKASRSGNTATVEVFIDGVQVGV-AQNPQKKMAQ 1760
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 37/157 (23%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1338 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 1396
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD---YPLH--------- 181
+ A+ GL Y++ ++ P+ +E ++ + D P+
Sbjct: 1397 QFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFED 1456
Query: 182 ------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 1457 GEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1493
>gi|297804712|ref|XP_002870240.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
gi|297316076|gb|EFH46499.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
Length = 214
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 133/232 (57%), Gaps = 53/232 (22%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+IL Y+F +K LL +AFTD S ++ SYE LE +GDS+LN+ + E LYP PG
Sbjct: 34 EKILNYKFKDKRLLVQAFTDASYVDDKCDSYEILELLGDSILNMSIIDEFIKLYPKESPG 93
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT+LR+ NV+TEKLARVA+K L++YLRH KPLLEEQI EF EA+ YPLHSNGL+ P
Sbjct: 94 PLTKLRAVNVDTEKLARVAVKHQLYRYLRHKKPLLEEQILEFVEAMEKYPLHSNGLLKVP 153
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
KVLADIVESTIGA+F DCNS+ + VW
Sbjct: 154 KVLADIVESTIGALFRDCNST-ETVW---------------------------------- 178
Query: 250 VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNE 301
ED+ +G G + KKE A N AAK+A++N + +
Sbjct: 179 -----------------EDKFVGCGQHPVKKETARNFAAKNAIDNFSKFFGD 213
>gi|15223286|ref|NP_171612.1| endoribonuclease Dicer [Arabidopsis thaliana]
gi|34922211|sp|Q9SP32.2|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
Full=Dicer-like protein 1; Short=AtDCL1; AltName:
Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein
CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS
1; AltName: Full=Protein SUSPENSOR 1
gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana]
gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana]
gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana]
Length = 1909
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 134/222 (60%), Gaps = 9/222 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L Y F K LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1563 ERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPG 1622
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNGL 185
LT LR+A VN E ARVA+K LH YLRH LE+QIREF + + +S GL
Sbjct: 1623 RLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGL 1682
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D WKVF+ LL+PM++PETL HPV EL E C
Sbjct: 1683 GDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERC 1742
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAH 284
Q+ +++ +TA +FI+ +G A P+K++A
Sbjct: 1743 QQQAEGLEYKASRSGNTATVEVFIDGVQVGV-AQNPQKKMAQ 1783
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 37/157 (23%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1361 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 1419
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD---YPLH--------- 181
+ A+ GL Y++ ++ P+ +E ++ + D P+
Sbjct: 1420 QFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFED 1479
Query: 182 ------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 1480 GEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1516
>gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
Length = 1909
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 134/222 (60%), Gaps = 9/222 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L Y F K LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1563 ERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPG 1622
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNGL 185
LT LR+A VN E ARVA+K LH YLRH LE+QIREF + + +S GL
Sbjct: 1623 RLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGL 1682
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D WKVF+ LL+PM++PETL HPV EL E C
Sbjct: 1683 GDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERC 1742
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAH 284
Q+ +++ +TA +FI+ +G A P+K++A
Sbjct: 1743 QQQAEGLEYKASRSGNTATVEVFIDGVQVGV-AQNPQKKMAQ 1783
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 37/157 (23%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1361 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 1419
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD---YPLH--------- 181
+ A+ GL Y++ ++ P+ +E ++ + D P+
Sbjct: 1420 QFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFED 1479
Query: 182 ------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 1480 GEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1516
>gi|356504203|ref|XP_003520888.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
Length = 1944
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 139/223 (62%), Gaps = 11/223 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L +FN++ LL E+ T S P S Y+RLE+VGD+VL+ L+T+ FF Y NLPPG
Sbjct: 1611 EGALNMKFNDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPG 1670
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI---LDYP-LHSNGL 185
LT LR+A VN E ARVA+K LH +LRH LE+QI+EF + + L P +S GL
Sbjct: 1671 RLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQVELSKPGFNSFGL 1730
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D +VWKVF+ LL PM++PETL HPV EL E C
Sbjct: 1731 GDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERC 1790
Query: 244 QKN--KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
Q+ L+ K + +T +FI+ +G A P+K++A
Sbjct: 1791 QQQAEGLEYKASRIGNLATV-EVFIDGVQVG-AAQNPQKKMAQ 1831
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 40/159 (25%)
Query: 87 AFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLAR 146
A T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L +
Sbjct: 1407 ALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQ 1465
Query: 147 VAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD----------YPLHSNG 184
A+ GL Y++ ++ P+ +E ++ ++ D H+NG
Sbjct: 1466 YALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKIERMDCHTNG 1525
Query: 185 LVD-----------------APKVLADIVESTIGAVFID 206
D + K LAD+VE+ IG +++
Sbjct: 1526 YEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVE 1564
>gi|334182203|ref|NP_001184881.1| endoribonuclease Dicer [Arabidopsis thaliana]
gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana]
Length = 1910
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 134/222 (60%), Gaps = 9/222 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L Y F K LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1564 ERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPG 1623
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNGL 185
LT LR+A VN E ARVA+K LH YLRH LE+QIREF + + +S GL
Sbjct: 1624 RLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGL 1683
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D WKVF+ LL+PM++PETL HPV EL E C
Sbjct: 1684 GDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERC 1743
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAH 284
Q+ +++ +TA +FI+ +G A P+K++A
Sbjct: 1744 QQQAEGLEYKASRSGNTATVEVFIDGVQVGV-AQNPQKKMAQ 1784
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 37/157 (23%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1362 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 1420
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD---YPLH--------- 181
+ A+ GL Y++ ++ P+ +E ++ + D P+
Sbjct: 1421 QFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFED 1480
Query: 182 ------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 1481 GEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1517
>gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana]
Length = 690
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 134/222 (60%), Gaps = 9/222 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L Y F K LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 344 ERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPG 403
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNGL 185
LT LR+A VN E ARVA+K LH YLRH LE+QIREF + + +S GL
Sbjct: 404 RLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGL 463
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D WKVF+ LL+PM++PETL HPV EL E C
Sbjct: 464 GDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERC 523
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAH 284
Q+ +++ +TA +FI+ +G A P+K++A
Sbjct: 524 QQQAEGLEYKASRSGNTATVEVFIDGVQVGV-AQNPQKKMAQ 564
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 37/157 (23%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 142 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 200
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD---YPLH--------- 181
+ A+ GL Y++ ++ P+ +E ++ + D P+
Sbjct: 201 QFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFED 260
Query: 182 ------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 261 GEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 297
>gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
lyrata]
gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
lyrata]
Length = 1962
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 134/222 (60%), Gaps = 9/222 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L + F K LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1616 ERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPG 1675
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNGL 185
LT LR+A VN E ARVA+K LH YLRH LE+QIREF + + +S GL
Sbjct: 1676 RLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGL 1735
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D WKVF+ LL+PM++PETL HPV EL E C
Sbjct: 1736 GDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERC 1795
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAH 284
Q+ +++ +TA +FI+ +G A P+K++A
Sbjct: 1796 QQQAEGLEYKASRSGNTATVEVFIDGVQVGV-AQNPQKKMAQ 1836
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 37/157 (23%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1414 EALTAASCQETF-CYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLY 1472
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD---YPLH--------- 181
+ A+ GL Y++ ++ P+ +E ++ + D P+
Sbjct: 1473 QFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFED 1532
Query: 182 ------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 1533 GEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1569
>gi|356571277|ref|XP_003553805.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
Length = 1942
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 137/223 (61%), Gaps = 11/223 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L +F ++ LL E+ T S P S Y+RLE+VGD+VL+ L+T+ FF Y NLPPG
Sbjct: 1609 EGALNMKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPG 1668
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY----PLHSNGL 185
LT LR+A VN E ARVA+K LH +LRH LE+QI+EF + + D +S GL
Sbjct: 1669 RLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGL 1728
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DI+ES GA+F+D +VWKVF+ LL PM++PETL HPV EL E C
Sbjct: 1729 GDCKAPKVLGDILESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERC 1788
Query: 244 QKN--KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
Q+ L+ K + +T +FI+ +G A P+K++A
Sbjct: 1789 QQQAEGLEYKASRIGNLATV-EVFIDGVQVG-AAQNPQKKMAQ 1829
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 40/160 (25%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1404 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 1462
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD----------YPLHSN 183
+ A+ GL Y++ ++ P+ +E ++ ++ D H++
Sbjct: 1463 QYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKIERMDCHTD 1522
Query: 184 GLVD-----------------APKVLADIVESTIGAVFID 206
G D + K LAD+VE+ IG +++
Sbjct: 1523 GYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVE 1562
>gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens]
Length = 1662
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 141/230 (61%), Gaps = 9/230 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E +G++F ++LL EA T S P Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1325 EASIGHKFRKRSLLVEAITHASRPSSGVPGYQRLEFVGDAVLDYLITRFLFFKYTDLPPG 1384
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI---LDYP-LHSNGL 185
LT LR+A VN E ARVA+K H +LRH LE QIR F I LD P ++S GL
Sbjct: 1385 RLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELDKPGVNSFGL 1444
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DI+ES GA+F+D D VWKVF+ LL+PM++PETL HPV EL E C
Sbjct: 1445 GDFKAPKVLGDILESIAGALFLDACLETDHVWKVFEPLLQPMVTPETLPMHPVRELQERC 1504
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
Q+ +++ + A ++++ +G A KK +A AA++AL
Sbjct: 1505 QQQAEALEYKASRAGNVATVEVYVDGVQIGSAQNAQKK-MAQKLAARNAL 1553
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F SYER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1111 EALTAASCQETF-SYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRMRQQIVSNSVLY 1169
Query: 146 RVAIKLGLHKYLRHNK 161
+ A+ GL Y++ ++
Sbjct: 1170 QYALDKGLQSYIQADR 1185
>gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
Length = 1662
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 141/230 (61%), Gaps = 9/230 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E +G++F ++LL EA T S P Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1325 EASIGHKFRKRSLLVEAITHASRPSSGVPCYQRLEFVGDAVLDYLITRFLFFKYTDLPPG 1384
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI---LDYP-LHSNGL 185
LT LR+A VN E ARVA+K H +LRH LE QIR F I LD P ++S GL
Sbjct: 1385 RLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELDKPGVNSFGL 1444
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DI+ES GA+F+D D VWKVF+ LL+PM++PETL HPV EL E C
Sbjct: 1445 GDFKAPKVLGDILESIAGALFLDACLETDHVWKVFEPLLQPMVTPETLPMHPVRELQERC 1504
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
Q+ +++ + A ++++ +G A KK +A AA++AL
Sbjct: 1505 QQQAEALEYKASRAGNVATVEVYVDGVQIGSAQNAQKK-MAQKLAARNAL 1553
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F SYER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1111 EALTAASCQETF-SYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRMRQQIVSNSVLY 1169
Query: 146 RVAIKLGLHKYLRHNK 161
+ A+ GL Y++ ++
Sbjct: 1170 QYALDKGLQSYIQADR 1185
>gi|379987676|gb|AFD22618.1| dicer-like 1 protein, partial [Nicotiana attenuata]
Length = 1690
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 138/232 (59%), Gaps = 8/232 (3%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
L FN+K LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG LT
Sbjct: 1358 LNISFNDKGLLLEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLT 1417
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI---LDYP-LHSNGLVD- 187
LR+A VN E ARVA+K GLH +LRH LE+QIR+F + L P +S GL D
Sbjct: 1418 DLRAAAVNNENFARVAVKHGLHLHLRHGSSALEKQIRDFVIEVKNELSKPGFNSFGLGDC 1477
Query: 188 -APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
APKVL DI ES GA+F+D +VWKVF+ LL PM++PETL HPV EL E CQ+
Sbjct: 1478 KAPKVLGDIFESIAGAIFLDSGCDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQ 1537
Query: 247 KLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+++ + A ++++ +G K+++A ++ +E+
Sbjct: 1538 AQGLEYKASRSGNIATVEVYVDGIQVGMAQNPQKRKMAQKVGCQECPCCVEK 1589
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 43/177 (24%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++++GY +LE A T SC E F YER E +GD+ L ++++ F YP G
Sbjct: 1134 KDMIGYPVPALKILE-ALTAASCQETF-CYERAELLGDAYLKWVVSRYLFLKYPQKHEGQ 1191
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILDY 178
LTR+R V+ L + A+ GL Y++ ++ P+ +E E ++
Sbjct: 1192 LTRMRQQMVSNMVLYQYALNKGLQSYIQADRFSPSRWAAPGVLPVYDEDTNEEESSMFGN 1251
Query: 179 PLHSNGLVDA-----------------------------PKVLADIVESTIGAVFID 206
+ NG V A K +AD+VE+ IG ++D
Sbjct: 1252 EIIENGTVAAKTLAADEFEDEEAEEGELDTDSGSYRVLSSKTMADVVEALIGVYYVD 1308
>gi|2244899|emb|CAB10321.1| UFD1 like protein [Arabidopsis thaliana]
gi|7268289|emb|CAB78584.1| UFD1 like protein [Arabidopsis thaliana]
Length = 778
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 113/148 (76%), Gaps = 2/148 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+IL Y+F +K+LL +AFTD S ++ SYE LE +GDS+LN+ + + LYP PG
Sbjct: 58 EKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLYPKEAPG 117
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT+LR+ NV+TEKLARVA+ L+ YLRH KPLLEEQI EF EA+ YPLHSNGL+ P
Sbjct: 118 PLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSNGLLKVP 177
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKV 217
KVLADIVESTIGA+F+DCNS+ + VWK+
Sbjct: 178 KVLADIVESTIGAIFMDCNST-ETVWKI 204
>gi|449459586|ref|XP_004147527.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 353
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 145/230 (63%), Gaps = 13/230 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E IL Y+F NK LLEEA T S P SY+RLE++GDS + L ++ F LYP+L
Sbjct: 25 ERILSYKFKNKKLLEEALTHSSYLNSP----SYDRLEFIGDSAIGLAISTYFFPLYPDLN 80
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--DYPLHSNGL 185
G LT LR+ANV+TEKLARVA+ L+ Y+R N L++ +REF++A+ D + GL
Sbjct: 81 QGQLTLLRAANVSTEKLARVAVLHRLYSYVRRNADDLDDNVREFADAVALEDNSIPYGGL 140
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVC 243
V APKVLADIVES GA+++D + +W + K+ LKP+ +PE LK PVT L+E C
Sbjct: 141 VKAPKVLADIVESVAGAIYVDVEFDLQKLWAIIKDFLKPIYTPEDLKADPQPVTLLFEDC 200
Query: 244 QKNKLKVKFVDLWKEST-AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
QK +V + K ST ++++ +L+ G+ + +K IA AA++AL
Sbjct: 201 QKKGKQVHIENQEKGSTYVAKVYVDRRLVASGS-SKQKPIARLNAAREAL 249
>gi|449526605|ref|XP_004170304.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 339
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 145/230 (63%), Gaps = 13/230 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E IL Y+F NK LLEEA T S P SY+RLE++GDS + L ++ F LYP+L
Sbjct: 11 ERILSYKFKNKKLLEEALTHSSYLNSP----SYDRLEFIGDSAIGLAISTYFFPLYPDLN 66
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--DYPLHSNGL 185
G LT LR+ANV+TEKLARVA+ L+ Y+R N L++ +REF++A+ D + GL
Sbjct: 67 QGQLTLLRAANVSTEKLARVAVLHRLYSYVRRNADDLDDNVREFADAVALEDNSIPYGGL 126
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVC 243
V APKVLADIVES GA+++D + +W + K+ LKP+ +PE L+ PVT L+E C
Sbjct: 127 VKAPKVLADIVESVAGAIYVDVEFDLQKLWAIIKDFLKPIYTPEDLEADPQPVTLLFEDC 186
Query: 244 QKNKLKVKFVDLWKEST-AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
QK +V + K ST ++++ +L+ G+ + +K IA AA++AL
Sbjct: 187 QKKGKQVHIENQEKGSTYVAKVYVDRRLVASGS-SKQKPIARLNAAREAL 235
>gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
Length = 1730
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 147/233 (63%), Gaps = 13/233 (5%)
Query: 61 SLPNA--NNLDEEEI---LGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLL 114
S+P++ N++D E++ +GY+F K++L EA + S P Y+RLE+VGD+VL+ L
Sbjct: 1373 SVPDSVMNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHL 1432
Query: 115 LTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA 174
+T+ FF Y +LPPG LT LR+A VN E AR+++K H +LRH LE QI++F +
Sbjct: 1433 ITRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKD 1492
Query: 175 I---LDYP-LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
I LD P ++S G+ D APKVL DI+ES GA+F+D + D VWKVF+ LL+PM++P
Sbjct: 1493 IQSELDKPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTP 1552
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKK 280
+TL HPV EL E CQ+ +++ + S A +F++ +G KK
Sbjct: 1553 DTLPVHPVRELQERCQQQAEGLEYRASREGSIATVEVFVDGVQIGCAQNTQKK 1605
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F SYER E +GD+ L ++++ F +P G LTR+R V+ L
Sbjct: 1176 EALTAASCQETF-SYERAELLGDAYLKWVVSRRLFIKHPRKHEGQLTRMRQQTVSNMVLY 1234
Query: 146 RVAIKLGLHKYLRHNK 161
AI L Y++ ++
Sbjct: 1235 EFAISKSLQSYIQSDR 1250
>gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
Length = 1728
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 147/233 (63%), Gaps = 13/233 (5%)
Query: 61 SLPNA--NNLDEEEI---LGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLL 114
S+P++ N++D E++ +GY+F K++L EA + S P Y+RLE+VGD+VL+ L
Sbjct: 1373 SVPDSVMNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHL 1432
Query: 115 LTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA 174
+T+ FF Y +LPPG LT LR+A VN E AR+++K H +LRH LE QI++F +
Sbjct: 1433 ITRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKD 1492
Query: 175 I---LDYP-LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
I LD P ++S G+ D APKVL DI+ES GA+F+D + D VWKVF+ LL+PM++P
Sbjct: 1493 IQSELDKPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTP 1552
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKK 280
+TL HPV EL E CQ+ +++ + S A +F++ +G KK
Sbjct: 1553 DTLPVHPVRELQERCQQQAEGLEYRASREGSIATVEVFVDGVQIGCAQNTQKK 1605
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F SYER E +GD+ L ++++ F +P G LTR+R V+ L
Sbjct: 1176 EALTAASCQETF-SYERAELLGDAYLKWVVSRRLFIKHPRKHEGQLTRMRQQTVSNMVLY 1234
Query: 146 RVAIKLGLHKYLRHNK 161
AI L Y++ ++
Sbjct: 1235 EFAISKSLQSYIQSDR 1250
>gi|357464753|ref|XP_003602658.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355491706|gb|AES72909.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 344
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 146/237 (61%), Gaps = 11/237 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+I+GY F NKNLLEEA T S PE SYERLE++GD+VL ++ F +Y N+
Sbjct: 13 EKIIGYTFRNKNLLEEALTHSSYPESV-SYERLEFIGDAVLGHAISNHLFLVYTNVDQRQ 71
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS----NGLV 186
L+ LRSANV+TEKLAR A+ LH+Y+R L E IREF+ A+ + G V
Sbjct: 72 LSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIREFAAAVEQEKGRAIVLYGGAV 131
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYEVCQ 244
APKVLAD+VES AV++D + + +W V + LL+P+++ L K PVT LYE+C
Sbjct: 132 KAPKVLADVVESVAAAVYVDLDFDLKKLWVVIRGLLEPIVTLNDLEQKPQPVTMLYEICH 191
Query: 245 KN--KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
KN K+ ++ +STA ++++ +L A + +K+IA AAK A+ +ER+L
Sbjct: 192 KNGKKVDIRHSRNGDKSTA-SVYVDGELFAV-ASSDQKDIAKLDAAKSAVQKLERVL 246
>gi|449459642|ref|XP_004147555.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 338
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 146/228 (64%), Gaps = 9/228 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E IL Y FNNK+LLEEA T PS SYERLE+VGDS + L +T F P+L G
Sbjct: 9 ERILSYNFNNKSLLEEALTHPSYSASA-SYERLEFVGDSAIGLAVTNYFFLASPHLHQGH 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--SEAILDYPLHSNGLVDA 188
L+ LR+ANV+TEKLARVA+ GL+ Y+R + P ++++++EF S A+ + G++ A
Sbjct: 68 LSLLRAANVSTEKLARVAVTHGLYNYVRRDSPAMDDKVKEFVDSVALEGSSVPYGGMMKA 127
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQKN 246
PKVLADIVES GA+++D + +W + + LL+P+ + E L+ PVT L++VCQ+N
Sbjct: 128 PKVLADIVESVAGAIYVDVEFDLQKLWAIIRGLLEPIYTLEELQVEPQPVTVLFQVCQRN 187
Query: 247 KLKVKFVDLWK--ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+V + WK ++ + ++ + + G+ + +KEIA AA++AL
Sbjct: 188 GKQVD-IKHWKNGSNSIASVHVDGKFVASGS-SMQKEIARLNAAREAL 233
>gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease
III, bacterial [Medicago truncatula]
Length = 1939
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 136/222 (61%), Gaps = 9/222 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L +F +K LL E+ T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1605 EGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPG 1664
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY----PLHSNGL 185
LT LR+A VN E ARV +K LH +LRH LE+QI++F + + D +S GL
Sbjct: 1665 RLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELSKPGFNSFGL 1724
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DI+ES GA+F+D + +VWKVF+ LL PM++PETL HPV EL E C
Sbjct: 1725 GDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERC 1784
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAH 284
Q+ +++ + A +FI+ +G A P+K++A
Sbjct: 1785 QQQAEGLEYRASRAGNLATVEVFIDGVQVG-AAQNPQKKMAQ 1825
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 39/159 (24%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F +P G LTR+R V+ L
Sbjct: 1401 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVLY 1459
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIR-----------------------E 170
R A+ GL Y+ ++ P+ +E + E
Sbjct: 1460 RYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDEESSLFDQERSIFKAERMDNTDE 1519
Query: 171 FSEAILDYPLHSNG---LVDAPKVLADIVESTIGAVFID 206
F + + D L S+ V + K LAD+VE+ IG +++
Sbjct: 1520 FEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVE 1558
>gi|358348326|ref|XP_003638198.1| Endoribonuclease Dicer-like protein, partial [Medicago truncatula]
gi|355504133|gb|AES85336.1| Endoribonuclease Dicer-like protein, partial [Medicago truncatula]
Length = 472
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 146/237 (61%), Gaps = 11/237 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+I+GY F NKNLLEEA T S PE SYERLE++GD+VL ++ F +Y N+
Sbjct: 118 EKIIGYTFRNKNLLEEALTHSSYPESV-SYERLEFIGDAVLGHAISNHLFLVYTNVDQRQ 176
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS----NGLV 186
L+ LRSANV+TEKLAR A+ LH+Y+R L E IREF+ A+ + G V
Sbjct: 177 LSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIREFAAAVEQEKGRAIVLYGGAV 236
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYEVCQ 244
APKVLAD+VES AV++D + + +W V + LL+P+++ L K PVT LYE+C
Sbjct: 237 KAPKVLADVVESVAAAVYVDLDFDLKKLWVVIRGLLEPIVTLNDLEQKPQPVTMLYEICH 296
Query: 245 KN--KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
KN K+ ++ +STA ++++ +L A + +K+IA AAK A+ +ER+L
Sbjct: 297 KNGKKVDIRHSRNGDKSTA-SVYVDGELFAV-ASSDQKDIAKLDAAKSAVQKLERVL 351
>gi|357512663|ref|XP_003626620.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355501635|gb|AES82838.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 1965
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 136/222 (61%), Gaps = 9/222 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L +F +K LL E+ T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1631 EGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPG 1690
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY----PLHSNGL 185
LT LR+A VN E ARV +K LH +LRH LE+QI++F + + D +S GL
Sbjct: 1691 RLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELSKPGFNSFGL 1750
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DI+ES GA+F+D + +VWKVF+ LL PM++PETL HPV EL E C
Sbjct: 1751 GDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERC 1810
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAH 284
Q+ +++ + A +FI+ +G A P+K++A
Sbjct: 1811 QQQAEGLEYRASRAGNLATVEVFIDGVQVG-AAQNPQKKMAQ 1851
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 39/159 (24%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F +P G LTR+R V+ L
Sbjct: 1427 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVLY 1485
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIR-----------------------E 170
R A+ GL Y+ ++ P+ +E + E
Sbjct: 1486 RYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDEESSLFDQERSIFKAERMDNTDE 1545
Query: 171 FSEAILDYPLHSNG---LVDAPKVLADIVESTIGAVFID 206
F + + D L S+ V + K LAD+VE+ IG +++
Sbjct: 1546 FEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVE 1584
>gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens]
Length = 1695
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 136/227 (59%), Gaps = 9/227 (3%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
+G+ F ++LL EA T S P Y+RLE+VGD+VL+ L+T+ FF Y NLPPG LT
Sbjct: 1351 VGHEFRERSLLVEAITHASRPSLGVPCYQRLEFVGDAVLDHLITRYLFFKYTNLPPGRLT 1410
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI---LDYP-LHSNGLVD- 187
LR+A VN E ARVA+K H +LRH LE QIR F I LD P ++S GL D
Sbjct: 1411 DLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQIRNFVNDIHSELDKPGVNSFGLGDF 1470
Query: 188 -APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
APKVL DI ES GA+F+D VWKVF+ LL+PM+SPETL HPV L E CQ+
Sbjct: 1471 KAPKVLGDIFESIAGALFLDARLDTHQVWKVFEPLLQPMVSPETLPIHPVRGLQERCQQE 1530
Query: 247 KLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+++ ES A ++++ +G A KK +A A++AL
Sbjct: 1531 AEGLEYKVSRAESVATVEVYVDGVQIGSTQSAQKK-MAQKLGARNAL 1576
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
FSYER E + D+ L +++ F +P+ G LTR+R V+ L + A++ GL Y+
Sbjct: 1146 FSYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLYQHALEKGLQSYI 1205
Query: 158 RHNK 161
+ ++
Sbjct: 1206 QADR 1209
>gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
Length = 377
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 145/234 (61%), Gaps = 11/234 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +L Y+F ++ LLEEA T S + FSY+RLE+VGD+ L L + + P L PG+
Sbjct: 46 ERLLRYQFCDRALLEEALTHQSFSDGAFSYQRLEFVGDAALGLAFSNFLYLTNPTLGPGA 105
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH-------SN 183
L+ LR+AN++TEKLARVA++ L+ LR L+ + +F E++ +H
Sbjct: 106 LSTLRAANISTEKLARVAVRHDLYPLLRRKCARLDLLVGQFIESVKQEVMHDLATAPYGG 165
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+V APKVLADIVE+ AV++DC ++ +WKV + L +P+I+ ET+ PVT L+E+C
Sbjct: 166 SVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPVITAETVDEQPVTTLHELC 225
Query: 244 QKNKLKVKFVDLWKES--TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
QK+ KV + W++ T ++F+ +++G G+ + +K IA AA+DAL +
Sbjct: 226 QKHG-KVAQFETWQKGGMTMVNVFVGGEMVGLGS-SEQKVIAKLNAARDALGKL 277
>gi|388495198|gb|AFK35665.1| unknown [Medicago truncatula]
Length = 344
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 145/237 (61%), Gaps = 11/237 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+I+GY F NKNLLEEA T S PE SYERLE++GD+VL ++ F +Y N+
Sbjct: 13 EKIIGYTFRNKNLLEEALTHSSYPESV-SYERLEFIGDAVLGHAISNHLFLVYTNVDQRQ 71
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS----NGLV 186
L+ LRSANV+TEKLAR A+ LH+Y+R L E IREF+ A+ + G V
Sbjct: 72 LSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIREFAAAVEQEKGRAIVLYGGAV 131
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYEVCQ 244
A KVLAD+VES AV++D + + +W V + LL+P+++ L K PVT LYE+C
Sbjct: 132 KASKVLADVVESVAAAVYVDLDFDLKKLWVVIRGLLEPIVTLNDLEQKPQPVTMLYEICH 191
Query: 245 KN--KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
KN K+ ++ +STA ++++ +L A + +K+IA AAK A+ +ER+L
Sbjct: 192 KNGKKVDIRHSRNGDKSTA-SVYVDGELFAV-ASSDQKDIAKLDAAKSAVQKLERVL 246
>gi|357129531|ref|XP_003566415.1| PREDICTED: ribonuclease 3-like protein 2-like [Brachypodium
distachyon]
Length = 366
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 148/234 (63%), Gaps = 11/234 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +L Y+F+++ LLEEA T S + SY+RLE+VGD+ L + + P + PG+
Sbjct: 35 ERLLCYQFHDRGLLEEALTHQSFGDGSVSYQRLEFVGDAALGNAFSNFLYLTNPTIGPGA 94
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPLHSN 183
L+ LRSAN++TEKLARVA++ L+ LR P L+ + +F E++ L +
Sbjct: 95 LSTLRSANISTEKLARVAVRHDLYPLLRRACPRLDLLVGQFIESVKQELEDDLGAAPYGG 154
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+V APKVLADIVE+ AV++DC ++ +WKV + L +P+I+ ET+ PV+ L+E+C
Sbjct: 155 SVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVSTLHELC 214
Query: 244 QKNKLKVKFVDLWKE--STAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
QK+ K+ ++W++ +T ++F+ +L+G G+ + ++ IA AA++AL N+
Sbjct: 215 QKHG-KIPQFNIWQKGGTTVANVFVSGELVGMGS-SEQRTIAKLNAARNALGNL 266
>gi|226510363|ref|NP_001140816.1| uncharacterized protein LOC100272891 [Zea mays]
gi|194701228|gb|ACF84698.1| unknown [Zea mays]
gi|413948833|gb|AFW81482.1| hypothetical protein ZEAMMB73_371069 [Zea mays]
Length = 376
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 142/233 (60%), Gaps = 9/233 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +L Y+F ++ LLEEA T S + SY+RLE+VGD+ L L + + P L PG+
Sbjct: 45 ERLLRYQFCDRALLEEALTHQSFSDGALSYQRLEFVGDAALGLAFSNFLYLTNPTLGPGA 104
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH-------SN 183
L+ LR+AN++TEKLARVA++ L+ LR P L+ + +F E++ +H
Sbjct: 105 LSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLATAPYGG 164
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+V APKVLADIVE+ AV++DC ++ +WKV + L +P+I+ ET+ PVT L+E+C
Sbjct: 165 SVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTTLHELC 224
Query: 244 QKNKLKVKFVDLWKEST-AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
QK+ +F K+ ++F+ +++G G+ + +K IA AA+DAL +
Sbjct: 225 QKHGKVAQFKTWQKDGMIVVNVFVGGEMVGLGS-SEQKVIAKLNAARDALGKL 276
>gi|449526603|ref|XP_004170303.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like protein 2-like
[Cucumis sativus]
Length = 338
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 144/228 (63%), Gaps = 9/228 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E IL Y FNNK+LLEEA T S SYERLE+VGDS + L +T F P+L G
Sbjct: 9 ERILSYNFNNKSLLEEALTHXSYSASA-SYERLEFVGDSAIGLAITNYFFLASPHLHQGH 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--SEAILDYPLHSNGLVDA 188
L+ LR+ANV+TEKLARVA+ GL+ Y+R + P ++ +++EF S A+ +H L+ A
Sbjct: 68 LSLLRAANVSTEKLARVAVTHGLYNYVRRDSPAMDVKVKEFVDSVALEGSSVHYGRLMKA 127
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQKN 246
PKVLADIVES GAV++D N + +W + + LL+P+ + E L+ PVT L++V Q+N
Sbjct: 128 PKVLADIVESVAGAVYVDVNFDLQKLWVIIRGLLEPIYTLEELQVEPQPVTVLFQVGQRN 187
Query: 247 KLKVKFVDLWK--ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+V + WK ++ + ++ + + G+ + +KEIA AA++AL
Sbjct: 188 GKQVD-IKHWKNGSNSIASVHVDGKFVASGS-SMQKEIARLNAAREAL 233
>gi|251765118|sp|Q6ATG6.2|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName:
Full=Ribonuclease III-like protein 2; Short=RNase
III-like protein 2
Length = 317
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 141/234 (60%), Gaps = 11/234 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +L Y+F + LLEEA T S + SY+RLE+VGDS L L + + P L PG
Sbjct: 41 ERLLRYQFRDGRLLEEALTHQSFADDAVSYQRLEFVGDSALGLAFSNFLYLTNPTLGPGP 100
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP-------LHSN 183
L+ LR+AN++TEKLARVA++ L+ LR N P L+ + +F E + P +
Sbjct: 101 LSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTVPYGG 160
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+V APKVLADIVE+ AV++DC ++ +WKV + L +P+I+ ET+ PVT L+E+C
Sbjct: 161 SVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTMLHELC 220
Query: 244 QKNKLKVKFVDLWKES--TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
QK+ +F W++ T ++F+ +L+G G+ + +K IA AA+DA +
Sbjct: 221 QKHGKMAQF-KTWQKGGMTVVNVFVAGELVGIGS-SEQKVIAKLNAARDATRKL 272
>gi|224116530|ref|XP_002317324.1| predicted protein [Populus trichocarpa]
gi|222860389|gb|EEE97936.1| predicted protein [Populus trichocarpa]
Length = 217
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 133/210 (63%), Gaps = 10/210 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y+F NK LEEA T S + SY+R+E++GD+ L L L+ + YP L PG
Sbjct: 9 EKILNYKFKNKRHLEEALTHSSYTDSA-SYQRMEFLGDAALGLALSNYVYLAYPQLDPGH 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL----DYPLHSNGLV 186
L+ LR+AN++TEKLARVAIK GL++++RHN L+++++EFS+A+ D L G +
Sbjct: 68 LSLLRAANISTEKLARVAIKHGLYRFVRHNATALDDKVKEFSDAVSGEDDDDALVYGGSI 127
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQ 244
APK+LADIVES AV++D + + W +F+ +L+P+++ E L+ PVT L+E CQ
Sbjct: 128 KAPKILADIVESVAAAVYVDVDFDLQTFWVIFRGILEPIVTLEDLQQQPQPVTMLFERCQ 187
Query: 245 KNKLKVKFVDLWK--ESTAFHIFIEDQLLG 272
K V + WK + ++++ Q +
Sbjct: 188 KQGKNVD-IKHWKNEAKSIASVYVDGQFIA 216
>gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
Length = 524
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 149/261 (57%), Gaps = 23/261 (8%)
Query: 52 KAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDS 109
+AG E L + + E LGY F ++NLL +A T S + YERLE++GD+
Sbjct: 180 RAGSVVSPEVLNSIDFEGLENTLGYSFRSRNLLAQALTHSSSRQASMVPIYERLEFIGDA 239
Query: 110 VLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIR 169
VL+ LLT+ +F Y +L PG LT LR A +N+E AR +K LH ++ H QI+
Sbjct: 240 VLDHLLTRHIYFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIK 299
Query: 170 EFSE--------AILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKEL 221
+++ AI Y G V APKVL D+ +S +GAV+ID ++D VWKVF+ L
Sbjct: 300 TYAKHALNMEENAIYSYGF---GAVKAPKVLGDVFQSLVGAVYIDSGLNLDQVWKVFEPL 356
Query: 222 LKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIF-----IEDQLLGRGAY 276
L+P+++PE + HPV ELYE+C K+ K++ W S + +F + +++LGRG
Sbjct: 357 LQPLVTPEAVPIHPVRELYELCDKHLKKLE----WDYSLSGDLFLARALVGNKVLGRGTN 412
Query: 277 APKKEIAHNRAAKDALNNIER 297
KK +A AA +A+ +++
Sbjct: 413 VQKK-MAKKLAAINAIAKLDK 432
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 14/120 (11%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T +C E + YER+E +GD+ L ++ + + + P G LT R ++ L
Sbjct: 46 EALTAANCHEPY-CYERIELLGDAYLKWAVSTRLYLKFSDFPEGELTITRGKIISNSALH 104
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
+A++ GL Y+R N + + + E + KVLA++VE+ IGA ++
Sbjct: 105 YLALEKGLETYVRINPFVPGREPTDLQEL-------------SSKVLANVVEALIGAYYV 151
>gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana]
Length = 2024
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 134/249 (53%), Gaps = 36/249 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L Y F K LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1651 ERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPG 1710
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ---------------------- 167
LT LR+A VN E ARVA+K LH YLRH LE+Q
Sbjct: 1711 RLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSKSFKCLTVWL 1770
Query: 168 -----IREFSEAILDYP----LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWK 216
IREF + + +S GL D APKVL DIVES GA+F+D WK
Sbjct: 1771 LFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWK 1830
Query: 217 VFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGA 275
VF+ LL+PM++PETL HPV EL E CQ+ +++ +TA +FI+ +G A
Sbjct: 1831 VFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGV-A 1889
Query: 276 YAPKKEIAH 284
P+K++A
Sbjct: 1890 QNPQKKMAQ 1898
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 37/157 (23%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1449 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 1507
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD---YPLH--------- 181
+ A+ GL Y++ ++ P+ +E ++ + D P+
Sbjct: 1508 QFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFED 1567
Query: 182 ------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 1568 GEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1604
>gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
Length = 524
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 149/261 (57%), Gaps = 23/261 (8%)
Query: 52 KAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDS 109
+AG E L + + E LGY F ++NLL +A T S + YERLE++GD+
Sbjct: 180 RAGSVVSPEVLNSIDFEGLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEFIGDA 239
Query: 110 VLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIR 169
VL+ LLT+ +F Y +L PG LT LR A +N+E AR +K LH ++ H QI+
Sbjct: 240 VLDHLLTRHIYFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIK 299
Query: 170 EFSE--------AILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKEL 221
+++ AI Y G V APKVL D+ +S +GA++ID ++D VWKVF+ L
Sbjct: 300 TYAKHALNMEENAIYSYGF---GAVKAPKVLGDVFQSLVGALYIDSGLNLDQVWKVFEPL 356
Query: 222 LKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIF-----IEDQLLGRGAY 276
L+P+++PE + HPV ELYE+C K+ K++ W S + +F + +++LGRG
Sbjct: 357 LQPLVTPEAVPIHPVRELYELCDKHMKKLE----WDYSLSGDLFLARALVGNKVLGRGTN 412
Query: 277 APKKEIAHNRAAKDALNNIER 297
KK +A AA +A+ +++
Sbjct: 413 VQKK-MAKKLAAINAIAKLDK 432
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 14/120 (11%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T +C E + YER+E +GD+ L ++ + + + P G LT R ++ L
Sbjct: 46 EALTAANCHEPY-CYERIELLGDAYLKWAVSTRLYLKFSDFPEGELTITRGKIISNSALH 104
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
+A++ GL Y+R N + + + E + KVLA++VE+ IGA ++
Sbjct: 105 YLALEKGLETYVRINPFVPGREPTDLQEL-------------SSKVLANVVEALIGAYYV 151
>gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
Length = 1719
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 133/221 (60%), Gaps = 2/221 (0%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L Y+F N++LL EA T S P Y+RLE++GD VL+ L+++ F +P LPPG+
Sbjct: 1465 EHKLQYKFQNRSLLVEAITHASQPNCLLCYQRLEFLGDGVLDFLVSRHLFETHPGLPPGT 1524
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN-GLVDAP 189
LT LRSA VN + AR+ ++ GLH++L+H L+ +IR+F + + + P S + AP
Sbjct: 1525 LTDLRSAAVNNKWFARLVLRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASCFEDLSAP 1584
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
KVL D++ES GA+F+D N ++ +W+V LL P+++P TL+ HPV L E+C + +K
Sbjct: 1585 KVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSPLVTPATLRFHPVRILMELCARKGMK 1644
Query: 250 VKFVDLWKESTAFHI-FIEDQLLGRGAYAPKKEIAHNRAAK 289
V F +T + F E+ L+ P+K + A K
Sbjct: 1645 VSFFRTEATTTEVRVTFGEESLVETSQEKPRKSAKIDAALK 1685
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F SYE LE +GDS L ++T++ F +Y G L+ RS L
Sbjct: 1281 EAITSKKCHEEF-SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALH 1339
Query: 146 RVAIKLGLHKYLR 158
++A G+ +Y+R
Sbjct: 1340 QLAKSSGIAEYIR 1352
>gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 379
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 148/244 (60%), Gaps = 14/244 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +L YRF +++LL+EA T S SY+RLE+VGD+ L L + + P +
Sbjct: 45 ERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNPTVG 104
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPL 180
PG+L+ LR+AN++TEKLARVA++ L+ LR N P L+ + +F E++ L
Sbjct: 105 PGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLGITP 164
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELY 240
+ + APKVLADIVE+ AV++DC +I+ +WKV + L +P+++ ET+ PV+ L+
Sbjct: 165 YGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVSTLH 224
Query: 241 EVCQKNKLKVKFVDLWKE--STAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
E+CQK+ +KF W++ +T ++F+ L+G G+ + + IA A +DAL+ +
Sbjct: 225 ELCQKHGKDIKFKS-WQKGGTTVVNVFVGGVLVGTGS-SEQMGIAKLNATRDALSKLHGG 282
Query: 299 LNEK 302
N++
Sbjct: 283 GNQQ 286
>gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 381
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 148/244 (60%), Gaps = 14/244 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +L YRF +++LL+EA T S SY+RLE+VGD+ L L + + P +
Sbjct: 47 ERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNPTVG 106
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPL 180
PG+L+ LR+AN++TEKLARVA++ L+ LR N P L+ + +F E++ L
Sbjct: 107 PGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLGITP 166
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELY 240
+ + APKVLADIVE+ AV++DC +I+ +WKV + L +P+++ ET+ PV+ L+
Sbjct: 167 YGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVSTLH 226
Query: 241 EVCQKNKLKVKFVDLWKE--STAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
E+CQK+ +KF W++ +T ++F+ L+G G+ + + IA A +DAL+ +
Sbjct: 227 ELCQKHGKDIKFKS-WQKGGTTVVNVFVGGVLVGTGS-SEQMGIAKLNATRDALSKLHGG 284
Query: 299 LNEK 302
N++
Sbjct: 285 GNQQ 288
>gi|413948832|gb|AFW81481.1| hypothetical protein ZEAMMB73_371069 [Zea mays]
Length = 285
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 8/224 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +L Y+F ++ LLEEA T S + SY+RLE+VGD+ L L + + P L PG+
Sbjct: 45 ERLLRYQFCDRALLEEALTHQSFSDGALSYQRLEFVGDAALGLAFSNFLYLTNPTLGPGA 104
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH-------SN 183
L+ LR+AN++TEKLARVA++ L+ LR P L+ + +F E++ +H
Sbjct: 105 LSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLATAPYGG 164
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+V APKVLADIVE+ AV++DC ++ +WKV + L +P+I+ ET+ PVT L+E+C
Sbjct: 165 SVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTTLHELC 224
Query: 244 QKNKLKVKFVDLWKEST-AFHIFIEDQLLGRGAYAPKKEIAHNR 286
QK+ +F K+ ++F+ +++G G+ K + NR
Sbjct: 225 QKHGKVAQFKTWQKDGMIVVNVFVGGEMVGLGSSEQKSLGSVNR 268
>gi|357118476|ref|XP_003560980.1| PREDICTED: ribonuclease 3-like protein 2-like [Brachypodium
distachyon]
Length = 360
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 142/236 (60%), Gaps = 15/236 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLY---PNLP 127
E +L YRF+++ LLE A T S SY+RLE++GD+ L+L + FLY P L
Sbjct: 27 ERLLQYRFHDRALLELALTHQSFSGGAASYQRLEFLGDAALDLAFSD---FLYRANPTLG 83
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPL 180
PG LT LR+AN++TEKLARVA++ L+ LR P L+ + +F E +
Sbjct: 84 PGELTTLRAANISTEKLARVAVRHDLYPLLRRACPPLDLLVGQFIELVKQELEDDFSTAP 143
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELY 240
+ +V APKVLADIVE+ AV++DC S I+ WKV + L +P+I+ ET+ P++ L
Sbjct: 144 YGGCVVKAPKVLADIVEAIAAAVYMDCKSDIEKFWKVTRRLFEPLITVETMHEQPMSMLN 203
Query: 241 EVCQKNKLKVKFVDLWK-ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
E+CQK+ + +F + K E T IF+ L+G G+ + ++ IA A++DA++ +
Sbjct: 204 ELCQKHGMVPQFKESKKGEMTVIKIFVGGALVGMGS-SEQRAIAKLNASRDAVSKL 258
>gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
Length = 1291
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 131/238 (55%), Gaps = 12/238 (5%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
L E+ L Y F NK LL EA T S P+ F Y+RLE++GD+VL+ L+T+ F +P L
Sbjct: 1045 LSLEKELCYTFQNKALLLEAITHASTPDTVFCYQRLEFIGDAVLDFLVTRHLFTSHPGLS 1104
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSN 183
PG L+ LRSA+VN + LARVA+K LH YLRH L +I F + + P +
Sbjct: 1105 PGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKITSFLDVLDRDPECSVMFGF 1164
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ PK LADIVES GA+ +D + +W V K LL P ++P TL HPV E +E+C
Sbjct: 1165 KALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPVREFHELC 1224
Query: 244 QKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI-ERLLN 300
+ ++V +TA ++L + E++ + KDA ++ E+LL
Sbjct: 1225 SYKSWEFEWVQSSSGATA-------EILLKAGEQRFTEVSSIKNKKDARKDVAEKLLT 1275
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 73 ILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
+L + +N + + EA T C + F SYE LE +GDSVL +T++ + L+ + G L+
Sbjct: 840 VLCHMYNAFSQILEARTSLRCQDGF-SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELS 898
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLR 158
RS + L ++A+ L Y+R
Sbjct: 899 DRRSHAICNSTLRKLAVAQDLPMYVR 924
>gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
Length = 1255
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 131/238 (55%), Gaps = 12/238 (5%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
L E+ L Y F NK LL EA T S P+ F Y+RLE++GD+VL+ L+T+ F +P L
Sbjct: 1009 LSLEKELCYTFQNKALLLEAITHASTPDTVFCYQRLEFIGDAVLDFLVTRHLFTSHPGLS 1068
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSN 183
PG L+ LRSA+VN + LARVA+K LH YLRH L +I F + + P +
Sbjct: 1069 PGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKINSFLDVLDRDPECSVMFGF 1128
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ PK LADIVES GA+ +D + +W V K LL P ++P TL HPV E +E+C
Sbjct: 1129 KALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPVREFHELC 1188
Query: 244 QKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI-ERLLN 300
+ ++V +TA ++L + E++ + KDA ++ E+LL
Sbjct: 1189 SYKSWEFEWVQSSSGATA-------EILLKAGEQRFTEVSSIKNKKDARKDVAEKLLT 1239
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 73 ILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
+L + +N + + EA T C + F SYE LE +GDSVL +T++ + L+ + G L+
Sbjct: 804 VLCHMYNAFSQILEARTSLRCQDGF-SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELS 862
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLR 158
RS + L ++A+ L Y+R
Sbjct: 863 DRRSHAICNSTLRKLAVAQDLPMYVR 888
>gi|357129053|ref|XP_003566182.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Brachypodium
distachyon]
Length = 1806
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 134/232 (57%), Gaps = 9/232 (3%)
Query: 74 LGYRFNNKNLLEEAFTDPSC--PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
LGY F+ K LL EA T PS E +SY+RLE++GD+ L++LLT F + + G L
Sbjct: 1419 LGYAFSVKGLLLEALTHPSHQESEERYSYQRLEFLGDAALDILLTWHLFNSHKDTDEGEL 1478
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP-----LHSNGLV 186
T LRSA+VN E A+VA+K H +L+H+ +L +QI E++ ++ + L S+ +
Sbjct: 1479 TDLRSASVNNENFAKVAVKHKFHHFLQHSSEILLDQITEYANSLENSSMDEINLSSDAPL 1538
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
PKVL DIVES GA+ ID +D+VW VFK LL P+++PE L+ P EL E C +N
Sbjct: 1539 RGPKVLGDIVESIAGAILIDTKLDLDVVWGVFKPLLSPIVTPENLELPPFRELLEWCNRN 1598
Query: 247 K--LKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
L +K D K + ++D L+ R + K+ A AA L ++E
Sbjct: 1599 GYFLGIKCTDGEKLQAILDVQLKDMLVVRRGFGKNKKDAKAHAASMLLKDLE 1650
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 83 LLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTE 142
L+ EA T C E F S ERLE +GDSVL ++ F +PN G L+ R+ ++
Sbjct: 1219 LILEAITTLRCSEDF-SMERLELLGDSVLKYAVSCHLFLKFPNKHEGQLSSSRTDIISNA 1277
Query: 143 KLARVAIKLGLHKYLR--------------------HNK-PLLEEQIREFSEAILDYPLH 181
L R+ I+ + Y+R H K P+ E + + I D P
Sbjct: 1278 ALYRLGIEHKIQGYIRDAAFDPRRWLAPGQLTNRPFHCKCPVDSEVVTKDIHVIDDKPTI 1337
Query: 182 SNGLVD-------APKVLADIVESTIGAVFI 205
G K ++D VE+ IGA ++
Sbjct: 1338 KIGQACDKGHRWMCSKTISDCVEAIIGAYYV 1368
>gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens]
Length = 1641
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 124/217 (57%), Gaps = 14/217 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY F N L EA T S ++ Y+RLE++GD+VL+ LLT+ F +P P
Sbjct: 1354 EKRIGYTFKNIYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTSTP 1413
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS---EAILDYPLHS--- 182
G LT LR+A+VN E+ ARVA+K LH YLRH L QI EF EA D +S
Sbjct: 1414 GLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSFG 1473
Query: 183 -NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
NGL +APKVL D+VES GA+ +D +D VW V LL+P+++P TL HPVTEL E
Sbjct: 1474 LNGL-EAPKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATLDIHPVTELEE 1532
Query: 242 VCQKNKLKVKFV----DLWKESTAFHIFIEDQLLGRG 274
+C +K+ D + + I D+L RG
Sbjct: 1533 LCMSKGYSIKYGVHKEDECNSRAIYEVQISDELFFRG 1569
>gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
Length = 1651
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/183 (45%), Positives = 116/183 (63%), Gaps = 7/183 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER--FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F K LL EA T PS E + Y+RLE++GD+VL++L+T+ F + +
Sbjct: 1246 EAKLGYTFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTDE 1305
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI----LD-YPLHSN 183
G LT LRSA+VN E A+VA+K LH++L+H+ L++QI E+ ++ +D L S+
Sbjct: 1306 GELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDRTSLLSS 1365
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
G PKVL DIVES GA+ ID +D+VW+VFK LL P+++PE L+ P EL E C
Sbjct: 1366 GPSRGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENLELPPFRELNEWC 1425
Query: 244 QKN 246
KN
Sbjct: 1426 DKN 1428
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 28/148 (18%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S ERLE +GDSVL ++ F + N G L+ R + L
Sbjct: 1054 EAITTLRCCEDF-SMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLY 1112
Query: 146 RVAIKLGLHKYLRHNK---------------------PLLEEQIREFSEAILDYPLHSNG 184
R+ + + Y+R P+ E I E I D +
Sbjct: 1113 RLGTERRIQGYIRDAAFDPRRWLAPGQLSSRPCPCECPVKSEVITEDIHRIDDKSIIIGK 1172
Query: 185 LVD------APKVLADIVESTIGAVFID 206
D K ++D VE+ IGA +++
Sbjct: 1173 ACDKGHRWICSKTISDCVEAIIGAYYVE 1200
>gi|357131511|ref|XP_003567380.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Brachypodium
distachyon]
Length = 1183
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 134/235 (57%), Gaps = 9/235 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F+ K LL EA T PS E +SYERLE++GD+ L++LLT F + +
Sbjct: 787 EAKLGYAFSVKGLLLEALTHPSHQESEERYSYERLEFLGDAALDILLTWHLFSSHKDTDE 846
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP-----LHSN 183
G LT LRSA+VN E A+VA+K LH +L+ + +L +QI E++ ++ + L S+
Sbjct: 847 GELTDLRSASVNNENFAKVAVKHKLHHFLQQSSGILLDQITEYANSLENSSMDEINLSSD 906
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ PKVL DIVES GA+ ID +D+V VFK LL P+++PE L+ P EL E C
Sbjct: 907 APLRGPKVLGDIVESIAGAILIDTKLDLDVVRGVFKPLLSPIVTPENLELPPFRELLEWC 966
Query: 244 QKNK--LKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
KN L +K D K + +ED L+ R + K+ A AA L ++E
Sbjct: 967 NKNGYFLGIKCTDGDKIQAILDVQLEDVLVIRRGFGKNKKDAKAHAASMLLKDLE 1021
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 83 LLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTE 142
L+ EA T C E F S ERLE +GDSVL ++ F +P+ G L+ R ++
Sbjct: 590 LILEAITTLRCSEDF-SMERLELLGDSVLKYAVSCHLFLKFPDKHEGQLSSSRIDIISNA 648
Query: 143 KLARVAIKLGLHKYLR 158
L R+ IK + Y+R
Sbjct: 649 ALHRLGIKHKIQGYIR 664
>gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1275
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 131/237 (55%), Gaps = 9/237 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLP-- 127
E +L Y+F NK LL EA T SC Y+RLE++GD+VL+ L+TK + NL
Sbjct: 703 EILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLEFLGDAVLDFLITKHFYANSANLKRD 762
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE-AILDYPLHSNGLV 186
PG LT LRSA VN E ARVA++ LH YL HN L ++ ++ + D H
Sbjct: 763 PGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTDAQCHGWNGD 822
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
PKVL+D+VES GAVF+D +D VW VFK+LLKP+++P TL+ P+ EL+E+CQ
Sbjct: 823 SGPKVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPIRELWELCQTE 882
Query: 247 KL-----KVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
K K K + + ++D+ + P ++ A AA AL ++ L
Sbjct: 883 KFGEPNYKKKREAMGDFDMTVTVELKDETITGVGRKPDEKSARKVAAIQALETLKTL 939
>gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
Length = 1460
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 116/191 (60%), Gaps = 10/191 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY F NK L EA T S ++ Y+RLE++GD+VL+ LLT+ F +P P
Sbjct: 1228 EKRIGYTFKNKYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTSTP 1287
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS---EAILDYPLHS--- 182
G LT LR+A+VN E+ ARVA+K LH YLRH L QI EF EA D +S
Sbjct: 1288 GLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSFG 1347
Query: 183 -NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
NGL +APKVL D+VES GA+ +D +D VW V LL+P+++P TL HPVTEL E
Sbjct: 1348 LNGL-EAPKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATLDIHPVTELEE 1406
Query: 242 VCQKNKLKVKF 252
+C +K+
Sbjct: 1407 LCMSKGYSIKY 1417
>gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
Length = 1392
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 146/253 (57%), Gaps = 12/253 (4%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E L N + E +L Y+F +K+LL EA T S PE Y+RLE++GDSVL+ L+
Sbjct: 1141 QAEKLVNVRYM--ESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDYLI 1198
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI-REFSE- 173
TK + YPNL PG LT +RSA+VN E A+VA+K LHK++ H L + I R SE
Sbjct: 1199 TKHLYGEYPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHISRTVSEF 1258
Query: 174 ---AILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
+ + + PKVL D++ES GA+ +D + ++V+ K LL MI+PET
Sbjct: 1259 ERLSSVQSSFGWESEIAFPKVLGDVIESLAGAIHVDSGYNKEVVFACIKPLLGCMITPET 1318
Query: 231 LKTHPVTELYEVCQKNKLKVKFVDLWKESTAF---HIFIEDQLLGRGAYAPKKEIAHNRA 287
+K HPV EL E+CQK + ++ V ++ AF + ++ A A K++A A
Sbjct: 1319 VKLHPVRELTELCQKAQFELSKVKGFENGEAFFPVEVEAKEMSFAHTARAFDKKMAKKLA 1378
Query: 288 AKDALNNIERLLN 300
K+ LN++++ L+
Sbjct: 1379 YKEVLNSLKKSLD 1391
>gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group]
gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group]
Length = 350
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 44/267 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +L Y+F + LLEEA T S + SY+RLE+VGDS L L + + P L PG
Sbjct: 41 ERLLRYQFRDGRLLEEALTHQSFADDAVSYQRLEFVGDSALGLAFSNFLYLTNPTLGPGP 100
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP-------LHSN 183
L+ LR+AN++TEKLARVA++ L+ LR N P L+ + +F E + P +
Sbjct: 101 LSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTVPYGG 160
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWK--------------------------- 216
+V APKVLADIVE+ AV++DC ++ +WK
Sbjct: 161 SVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDWINNF 220
Query: 217 ------VFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKES--TAFHIFIED 268
V + L +P+I+ ET+ PVT L+E+CQK+ +F W++ T ++F+
Sbjct: 221 IYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMAQF-KTWQKGGMTVVNVFVAG 279
Query: 269 QLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L+G G+ + +K IA AA+DA +
Sbjct: 280 ELVGIGS-SEQKVIAKLNAARDATRKL 305
>gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group]
gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group]
gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group]
gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group]
Length = 344
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 44/267 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +L Y+F + LLEEA T S + SY+RLE+VGDS L L + + P L PG
Sbjct: 35 ERLLRYQFRDGRLLEEALTHQSFADDAVSYQRLEFVGDSALGLAFSNFLYLTNPTLGPGP 94
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP-------LHSN 183
L+ LR+AN++TEKLARVA++ L+ LR N P L+ + +F E + P +
Sbjct: 95 LSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTVPYGG 154
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWK--------------------------- 216
+V APKVLADIVE+ AV++DC ++ +WK
Sbjct: 155 SVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDWINNF 214
Query: 217 ------VFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKES--TAFHIFIED 268
V + L +P+I+ ET+ PVT L+E+CQK+ +F W++ T ++F+
Sbjct: 215 IYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMAQF-KTWQKGGMTVVNVFVAG 273
Query: 269 QLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L+G G+ + +K IA AA+DA +
Sbjct: 274 ELVGIGS-SEQKVIAKLNAARDATRKL 299
>gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
lyrata]
gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
lyrata]
Length = 2033
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 147/265 (55%), Gaps = 21/265 (7%)
Query: 48 FVNEKAGDES--ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERL 103
F K ES ++E L N + E +L Y F +K+LL EA T S PE Y+RL
Sbjct: 1775 FTTTKIERESPIQAEKLVNVGYM--ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRL 1832
Query: 104 EYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPL 163
E++GDSVL+ L+TK + YP L PG LT +RSA+VN E A VA+K LHK++ H +
Sbjct: 1833 EFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKENLHKHILHASHV 1892
Query: 164 LEEQI----REFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFK 219
L + I EF ++ L + PKVL D++ES GA+F+D + ++V+ K
Sbjct: 1893 LHKHISRTVSEFEQSSLQSTFGWECDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIK 1952
Query: 220 ELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFI-----EDQLLGRG 274
LL MI+PET+K HPV EL E+CQK++ ++ ++ F+ F ++
Sbjct: 1953 PLLGCMITPETVKLHPVRELTELCQKSQFEL------SKAKDFNYFTVEVKAKEMSFAHT 2006
Query: 275 AYAPKKEIAHNRAAKDALNNIERLL 299
A A K++A A K+ LN +++ L
Sbjct: 2007 AKASDKKMAKKLAYKEVLNLLKKSL 2031
>gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group]
Length = 1839
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 136/236 (57%), Gaps = 10/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE--RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F+ K LL EA T PS E + YERLE++GD+VL++LLT+ F + +
Sbjct: 1179 EAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNE 1238
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----SEAILDYPLHSN 183
G LT LRSA+VN E A+VA+K H +L+H+ LL +QI E+ ++ L S+
Sbjct: 1239 GELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSD 1298
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
GL PKVL DIVES GA+ +D +D+VW +F+ LL P+++PE L+ P EL E C
Sbjct: 1299 GLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWC 1358
Query: 244 QKNK--LKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
K+ + + D A + +++ LL R ++ K++ A A+ L ++E
Sbjct: 1359 GKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLE 1414
>gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group]
gi|75321191|sp|Q5N870.1|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName:
Full=Dicer-like protein 3a; Short=OsDCL3a
gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group]
gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group]
Length = 1651
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 136/236 (57%), Gaps = 10/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE--RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F+ K LL EA T PS E + YERLE++GD+VL++LLT+ F + +
Sbjct: 1245 EAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNE 1304
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----SEAILDYPLHSN 183
G LT LRSA+VN E A+VA+K H +L+H+ LL +QI E+ ++ L S+
Sbjct: 1305 GELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSD 1364
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
GL PKVL DIVES GA+ +D +D+VW +F+ LL P+++PE L+ P EL E C
Sbjct: 1365 GLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWC 1424
Query: 244 QKNK--LKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
K+ + + D A + +++ LL R ++ K++ A A+ L ++E
Sbjct: 1425 GKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLE 1480
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 60 ESLPNANNLDEEEILGYRFNNKN--LLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
ESL A+ L E +GY +N + L+ EA T C E F S ERLE +GDSVL ++
Sbjct: 1026 ESLTLASQLRSE--IGYSDSNISSFLILEAITTLRCSEDF-SMERLELLGDSVLKYAVSC 1082
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
F +PN G L+ +R + L ++ I+ + Y+R
Sbjct: 1083 HLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVR 1123
>gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group]
Length = 1858
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 136/236 (57%), Gaps = 10/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE--RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F+ K LL EA T PS E + YERLE++GD+VL++LLT+ F + +
Sbjct: 1179 EAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNE 1238
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----SEAILDYPLHSN 183
G LT LRSA+VN E A+VA+K H +L+H+ LL +QI E+ ++ L S+
Sbjct: 1239 GELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSD 1298
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
GL PKVL DIVES GA+ +D +D+VW +F+ LL P+++PE L+ P EL E C
Sbjct: 1299 GLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWC 1358
Query: 244 QKNK--LKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
K+ + + D A + +++ LL R ++ K++ A A+ L ++E
Sbjct: 1359 GKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLE 1414
>gi|379987678|gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]
Length = 1403
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 145/253 (57%), Gaps = 16/253 (6%)
Query: 59 SESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLT 116
+E L N L E +L Y+F++ +LL EA T S PE Y+RLE++GD+VL+ +T
Sbjct: 1152 AEKLVNVRYL--ESLLDYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYAVT 1209
Query: 117 KEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL 176
+F YP L PG +T LRSA+VN E A+ A+K GLHK++ H L+ QI +L
Sbjct: 1210 AHLYFKYPGLSPGFITDLRSASVNNECYAQAAVKAGLHKHILHASQDLQRQI---VNTVL 1266
Query: 177 DY----PLHSNGL---VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE 229
++ P + G PKVL D++ES GA+F+D + D+V++ + LL+P+I+P+
Sbjct: 1267 NFEKLDPASTFGWESETTFPKVLGDVIESLAGAIFVDSGFNKDVVFQSVRTLLEPLITPD 1326
Query: 230 TLKTHPVTELYEVC-QKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
T+K HPV EL E+C QK +K K V + +E+ +I +E + G E A
Sbjct: 1327 TVKLHPVRELSELCDQKGYIKKKNV-VSRENGVAYITVEVEADGVSHKFTCSERDKKMAE 1385
Query: 289 KDALNNIERLLNE 301
K A N+ +LL E
Sbjct: 1386 KVACKNVLKLLKE 1398
>gi|414871006|tpg|DAA49563.1| TPA: hypothetical protein ZEAMMB73_299457, partial [Zea mays]
Length = 1517
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 138/247 (55%), Gaps = 17/247 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E L Y F+ K LL EA + PS E + Y+RLE++GDSVL+LL+T+ + + ++ P
Sbjct: 1190 EAKLKYNFSVKGLLLEAISHPSVQELGVDYCYQRLEFLGDSVLDLLITQHLYATHTDVDP 1249
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD- 187
G LT LRSA+V+ E A+ ++ +H +L+H +L EQ+ E+ + L+Y N +
Sbjct: 1250 GELTDLRSASVSNENFAQAVVRNNIHNHLQHGSGILLEQVTEYVRSNLEYHGKENQFLQQ 1309
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
APKVL DI+ES GA+FID N +D+VWK+ + LL PMI+P+ L P EL E+C
Sbjct: 1310 ATCKAPKVLGDIMESITGAIFIDVNFDVDLVWKIVEPLLSPMITPDKLALPPYRELLELC 1369
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE-------DQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
F++ S + IE +QL+ +G K N AA+ ++ +
Sbjct: 1370 SHLGC---FIESKCTSEGEELIIEMKVQLRDEQLIAQGHDRNGKTAKANAAARILVDMKK 1426
Query: 297 RLLNEKR 303
R L+ K+
Sbjct: 1427 RGLSLKQ 1433
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
+L+ EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V
Sbjct: 990 SLILEAITTLRCCESF-SLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCN 1048
Query: 142 EKLARVAIKLGLHKYLR 158
L + I L Y+R
Sbjct: 1049 ATLHKHGIWQSLQGYIR 1065
>gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
Length = 1386
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E L N + E +L Y F +K+LL EA T S PE Y+RLE++GDSVL+ L+
Sbjct: 1140 QAEKLVNVGYM--ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLI 1197
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL----RHNKPLLEEQIREF 171
TK + YP L PG LT +RSA+VN E A VA+K LHK++ H + + EF
Sbjct: 1198 TKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEF 1257
Query: 172 SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
++ L + PKVL D++ES GA+F+D + ++V+ K LL MI+PET+
Sbjct: 1258 EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETV 1317
Query: 232 KTHPVTELYEVCQKNKLKV-KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
K HPV EL E+CQK + ++ K D +S + ++ A A K++A A K+
Sbjct: 1318 KLHPVRELTELCQKWQFELSKAKDF--DSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1375
Query: 291 ALN 293
LN
Sbjct: 1376 VLN 1378
>gi|145338056|ref|NP_566199.4| protein dicer-like 2 [Arabidopsis thaliana]
gi|334185051|ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana]
gi|322518659|sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName:
Full=Dicer-like protein 2; Short=AtDCL2
gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana]
gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana]
Length = 1388
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E L N + E +L Y F +K+LL EA T S PE Y+RLE++GDSVL+ L+
Sbjct: 1142 QAEKLVNVGYM--ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLI 1199
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL----RHNKPLLEEQIREF 171
TK + YP L PG LT +RSA+VN E A VA+K LHK++ H + + EF
Sbjct: 1200 TKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEF 1259
Query: 172 SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
++ L + PKVL D++ES GA+F+D + ++V+ K LL MI+PET+
Sbjct: 1260 EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETV 1319
Query: 232 KTHPVTELYEVCQKNKLKV-KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
K HPV EL E+CQK + ++ K D +S + ++ A A K++A A K+
Sbjct: 1320 KLHPVRELTELCQKWQFELSKAKDF--DSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1377
Query: 291 ALN 293
LN
Sbjct: 1378 VLN 1380
>gi|414871004|tpg|DAA49561.1| TPA: hypothetical protein ZEAMMB73_299457, partial [Zea mays]
Length = 1199
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 137/247 (55%), Gaps = 17/247 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E L Y F+ K LL EA + PS E + Y+RLE++GDSVL+LL+T+ + + ++ P
Sbjct: 872 EAKLKYNFSVKGLLLEAISHPSVQELGVDYCYQRLEFLGDSVLDLLITQHLYATHTDVDP 931
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN----- 183
G LT LRSA+V+ E A+ ++ +H +L+H +L EQ+ E+ + L+Y N
Sbjct: 932 GELTDLRSASVSNENFAQAVVRNNIHNHLQHGSGILLEQVTEYVRSNLEYHGKENQFLQQ 991
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
APKVL DI+ES GA+FID N +D+VWK+ + LL PMI+P+ L P EL E+C
Sbjct: 992 ATCKAPKVLGDIMESITGAIFIDVNFDVDLVWKIVEPLLSPMITPDKLALPPYRELLELC 1051
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE-------DQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
F++ S + IE +QL+ +G K N AA+ ++ +
Sbjct: 1052 SHLGC---FIESKCTSEGEELIIEMKVQLRDEQLIAQGHDRNGKTAKANAAARILVDMKK 1108
Query: 297 RLLNEKR 303
R L+ K+
Sbjct: 1109 RGLSLKQ 1115
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
+L+ EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V
Sbjct: 672 SLILEAITTLRCCESF-SLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCN 730
Query: 142 EKLARVAIKLGLHKYLR 158
L + I L Y+R
Sbjct: 731 ATLHKHGIWQSLQGYIR 747
>gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana]
Length = 1374
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E L N + E +L Y F +K+LL EA T S PE Y+RLE++GDSVL+ L+
Sbjct: 1128 QAEKLVNVGYM--ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLI 1185
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL----RHNKPLLEEQIREF 171
TK + YP L PG LT +RSA+VN E A VA+K LHK++ H + + EF
Sbjct: 1186 TKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEF 1245
Query: 172 SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
++ L + PKVL D++ES GA+F+D + ++V+ K LL MI+PET+
Sbjct: 1246 EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETV 1305
Query: 232 KTHPVTELYEVCQKNKLKV-KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
K HPV EL E+CQK + ++ K D +S + ++ A A K++A A K+
Sbjct: 1306 KLHPVRELTELCQKWQFELSKAKDF--DSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1363
Query: 291 ALN 293
LN
Sbjct: 1364 VLN 1366
>gi|145331748|ref|NP_001078101.1| protein dicer-like 2 [Arabidopsis thaliana]
gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana]
Length = 1374
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E L N + E +L Y F +K+LL EA T S PE Y+RLE++GDSVL+ L+
Sbjct: 1128 QAEKLVNVGYM--ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLI 1185
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL----RHNKPLLEEQIREF 171
TK + YP L PG LT +RSA+VN E A VA+K LHK++ H + + EF
Sbjct: 1186 TKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEF 1245
Query: 172 SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
++ L + PKVL D++ES GA+F+D + ++V+ K LL MI+PET+
Sbjct: 1246 EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETV 1305
Query: 232 KTHPVTELYEVCQKNKLKV-KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
K HPV EL E+CQK + ++ K D +S + ++ A A K++A A K+
Sbjct: 1306 KLHPVRELTELCQKWQFELSKAKDF--DSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1363
Query: 291 ALN 293
LN
Sbjct: 1364 VLN 1366
>gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
Length = 2042
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 140/250 (56%), Gaps = 11/250 (4%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E L N + E +L Y F +K+LL EA T S PE Y+RLE++GDSVL+ L+
Sbjct: 1796 QAEKLVNVGYM--ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLI 1853
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL----RHNKPLLEEQIREF 171
TK + YP L PG LT +RSA+VN E A VA+K LHK++ H + + EF
Sbjct: 1854 TKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEF 1913
Query: 172 SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
++ L + PKVL D++ES GA+F+D + ++V+ K LL MI+PET+
Sbjct: 1914 EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETV 1973
Query: 232 KTHPVTELYEVCQKNKLKV-KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
K HPV EL E+CQK + ++ K D +S + ++ A A K++A A K+
Sbjct: 1974 KLHPVRELTELCQKWQFELSKAKDF--DSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 2031
Query: 291 ALNNIERLLN 300
LN ++ L+
Sbjct: 2032 VLNLLKNSLD 2041
>gi|414871005|tpg|DAA49562.1| TPA: hypothetical protein ZEAMMB73_299457 [Zea mays]
Length = 1440
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 112/180 (62%), Gaps = 7/180 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E L Y F+ K LL EA + PS E + Y+RLE++GDSVL+LL+T+ + + ++ P
Sbjct: 1190 EAKLKYNFSVKGLLLEAISHPSVQELGVDYCYQRLEFLGDSVLDLLITQHLYATHTDVDP 1249
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD- 187
G LT LRSA+V+ E A+ ++ +H +L+H +L EQ+ E+ + L+Y N +
Sbjct: 1250 GELTDLRSASVSNENFAQAVVRNNIHNHLQHGSGILLEQVTEYVRSNLEYHGKENQFLQQ 1309
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
APKVL DI+ES GA+FID N +D+VWK+ + LL PMI+P+ L P EL E+C
Sbjct: 1310 ATCKAPKVLGDIMESITGAIFIDVNFDVDLVWKIVEPLLSPMITPDKLALPPYRELLELC 1369
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
+L+ EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V
Sbjct: 990 SLILEAITTLRCCESF-SLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCN 1048
Query: 142 EKLARVAIKLGLHKYLR 158
L + I L Y+R
Sbjct: 1049 ATLHKHGIWQSLQGYIR 1065
>gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis]
Length = 685
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 135/247 (54%), Gaps = 16/247 (6%)
Query: 61 SLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPER-FFSYERLEYVGDSVLNLLLTKE 118
SL ++DE E +LGY F+ K LL EAF PS E Y+RLE++GD+VL+ ++T
Sbjct: 215 SLIKCIDIDELERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSY 274
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY 178
+ +YP++ PG LT +RS VN E A VA++ GL+ YL L + ++ + +
Sbjct: 275 LYSVYPDMKPGYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYVDFMKAL 334
Query: 179 PLHSNGLVD-----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
D PKVL DIVES GA+ ID +D VWK+ +L+P+++PETL
Sbjct: 335 FTADRDSCDEPEPKCPKVLGDIVESFAGALVIDTGFDLDCVWKLMLNILQPIVTPETLCL 394
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGR------GAYAPKKEI--AHN 285
PV EL EVCQ + L + +V K + ++ +E ++ G+ G + I A
Sbjct: 395 QPVRELSEVCQHHNLTLDYVKASKGNGNGYL-VEAKVSGKKVSGSVGGTGTRTSIKDAKK 453
Query: 286 RAAKDAL 292
A+KDAL
Sbjct: 454 VASKDAL 460
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 58/147 (39%), Gaps = 28/147 (19%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S ERLE +GD+ L +++ F +Y L G LT+ RS + L
Sbjct: 35 EAITTERCMEGF-SLERLEVLGDAFLKYAVSRRLFLVYDKLDEGQLTKKRSNAIKNSNLY 93
Query: 146 RVAIKLGLHKYLRH-----------NKPLLEEQIREFSEAILDYPLHSNGLVDAP----- 189
+ A G Y+R +P E I Y N + D
Sbjct: 94 KRAKGKGFPAYIRDEYFDPKQYFALGRPCKNVCTPELVHMI-HYFEGDNTMTDTDFTSVK 152
Query: 190 ----------KVLADIVESTIGAVFID 206
K +AD+VE+ IGA +D
Sbjct: 153 CTKRHHWLHMKTIADVVEALIGAYLVD 179
>gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
Length = 1586
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 112/180 (62%), Gaps = 7/180 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E L Y F+ K LL EA + PS E + Y+RLE++GDSVL+LL+T+ + + ++ P
Sbjct: 1183 EAKLKYNFSVKGLLLEAVSHPSLQELGVDYCYQRLEFLGDSVLDLLITQHLYATHTDVDP 1242
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD- 187
G LT LRSA V+ E A+ ++ +H +L+H +L EQ+ E+ + L+Y N V
Sbjct: 1243 GELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQVTEYVRSSLEYHGKENEFVQQ 1302
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
APKVL DI+ES GA+FID N ++D+VWK+ + LL PMI+P+ L P EL E+C
Sbjct: 1303 ATFKAPKVLGDIMESITGAIFIDVNFNVDLVWKIVEPLLSPMITPDKLALPPYRELLELC 1362
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 29/152 (19%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
+L+ EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V
Sbjct: 983 SLILEAITTLRCCETF-SLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCN 1041
Query: 142 EKLARVAIKLGLHKYLRHNK----------------------------PLLEEQIREFSE 173
L + I L Y+R P E I +
Sbjct: 1042 ATLHKHGICRSLQGYIRDTAFDPRRWVAPGQISLRPFPCNCGIETAFVPFTGEYISDDPS 1101
Query: 174 AILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
I+ P K ++D VE+ +GA ++
Sbjct: 1102 FIVGKPCDRGHRWMCSKTVSDCVEALVGAYYV 1133
>gi|357465903|ref|XP_003603236.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355492284|gb|AES73487.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 1758
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 133/239 (55%), Gaps = 15/239 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY F+ K LL EA T S E YERLE++GDSVL+LL+T F + + P
Sbjct: 1325 EAKIGYEFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTEIDP 1384
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD-----YPLHSN 183
G LT LRSA+VN E A+ A++ LH++L H+ LL+ QI E+++ I + PL
Sbjct: 1385 GELTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQSQILEYAKVISEPEDNAVPLQG- 1443
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ APK L D+VES GA+ ID +D VWKVF LL P+++PE L+ P+ EL ++
Sbjct: 1444 --IKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPEKLELPPLRELMQLS 1501
Query: 244 QKNKLKVKF-VDLWKESTAFHIFIEDQL----LGRGAYAPKKEIAHNRAAKDALNNIER 297
VK V K+ T H+ I QL L R P K+ A AA L ++E+
Sbjct: 1502 DSLGYFVKVKVSHDKKGTMEHVEIRVQLPNERLVREGKGPNKKSAKGDAAFQLLKDLEK 1560
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 72 EILGYRFNNK---NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EI G+ N K +L+ EA T C E+F S ERLE +GDSVL ++ + YP
Sbjct: 1114 EINGHTDNFKIPSSLVLEALTTLRCCEKF-SMERLELLGDSVLKYAVSCHLYLKYPKKHE 1172
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLR-----------------HNKPLLEEQIREF 171
G L+ LR V L ++ L Y+R H P + E
Sbjct: 1173 GHLSSLRQWAVRNSTLHKLGTDHNLQGYIRDSAFEPRRWIAPGQDCIHTVPC--DCGLET 1230
Query: 172 SEAILDYPLHS-------NGLVD------APKVLADIVESTIGAVFI 205
E LD H+ L D K +AD VE+ IGA ++
Sbjct: 1231 LEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKTIADCVEALIGAYYV 1277
>gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis]
Length = 330
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 128/237 (54%), Gaps = 11/237 (4%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQ 119
+ N N E +L Y F L+ E+ T S E FS Y+RLE++GD+VL+ L+T
Sbjct: 77 VSNVNVRYLESLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYF 136
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
+ YP L PG LT LRSA VN + A+ A+K LH+ LRH L QI EF++ I
Sbjct: 137 YKTYPGLSPGLLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSSS 196
Query: 180 LHSNGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK 232
+ V PKVL D++ES GAV +D +VW K LL+P+++P+T+K
Sbjct: 197 ASGDHFFGWTTTEVAVPKVLGDLIESIAGAVLVDSEFDTQLVWNAMKPLLEPLVTPKTIK 256
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
PV EL E+CQK F D +E T+ + +E ++ G +Y E ++ R AK
Sbjct: 257 YQPVRELQELCQKEFYTCCFDDSQEEGTS-TVKVEVRVKGD-SYIETCEASNKRTAK 311
>gi|414879098|tpg|DAA56229.1| TPA: hypothetical protein ZEAMMB73_255524 [Zea mays]
Length = 595
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 112/183 (61%), Gaps = 7/183 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER--FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F K LL EA T S E + Y+RLE++GD+VL++L+T+ F + +
Sbjct: 192 EAKLGYTFQMKGLLIEALTHSSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTDE 251
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----SEAILDYPLHSN 183
G LT LRSA+VN E A+VA+K LH++L+H+ L++QI E+ S ++ L S+
Sbjct: 252 GELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLESSSMDRASLLSS 311
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
G PKVL DIVES GA+ ID +D+VW+VFK LL P+++PE L+ EL E
Sbjct: 312 GPCRGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENLELPRFRELNEWS 371
Query: 244 QKN 246
KN
Sbjct: 372 DKN 374
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
FS ERLE +GDSVL ++ F + N G L+ R + L R+ I+ + Y+
Sbjct: 10 FSMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGIERRIQGYI 69
Query: 158 RHNK---------------------PLLEEQIREFSEAILDYPLHSNGLVD------APK 190
R P+ E + E I D + D K
Sbjct: 70 RDAAFDPRRWLAPGQLSRRPCPCECPVNSEVVTEDIHRIDDKSIIIGKACDKGHRWICSK 129
Query: 191 VLADIVESTIGAVFID 206
++D VE+ IGA +++
Sbjct: 130 TISDCVEALIGAYYVE 145
>gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa]
gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa]
Length = 1492
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 135/232 (58%), Gaps = 11/232 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER--FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F K +L+EA T S E+ + Y+RLE++GDSVL+LL+T + + ++ P
Sbjct: 1126 ESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLITWHLYQSHTDVDP 1185
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT LRSA+VN + A+VA+K L+ +L H LL+ QI E+ + + S+ A
Sbjct: 1186 GELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHE----SDQGTKA 1241
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
PK L D++ES GA+ ID ++D VW++FK LL P+++PE L+ P+ EL E+C +
Sbjct: 1242 PKALGDLIESIAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLELPPLRELVELCDSIGV 1301
Query: 249 KVKFVDLWKESTAFH----IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
VK K++ H + ++++LL Y ++ A +AA L ++
Sbjct: 1302 FVK-EKCTKKAEMVHAQLWVQLDNELLSGEGYEKNRKAAKGKAASCLLKKLQ 1352
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
+L+ EA T C E F S ERLE +GDSVL ++ F YPN G L+ RS V
Sbjct: 927 SLILEAITTLRCCESF-SMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVCN 985
Query: 142 EKLARVAIKLGLHKYL------------------RHNKPL----------LEEQIREFSE 173
L ++ + Y+ R P L+ + + S
Sbjct: 986 STLHKLGTDCKVQGYILDSAFDPRRWAAPGQKSVRTPAPCKCGVDTLEVPLDRKFQTESA 1045
Query: 174 AI-LDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
+ + P S K ++D VES IGA ++
Sbjct: 1046 IVKVGKPCDSGHRWMGSKTISDCVESVIGAYYV 1078
>gi|449489290|ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
3a-like [Cucumis sativus]
Length = 1639
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 132/237 (55%), Gaps = 15/237 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY F K LL EA T S E + Y+RLE++GDSVL+LL+T + Y ++ P
Sbjct: 1256 ESKIGYDFAVKGLLLEAVTHTSDQEIGVNYCYQRLEFLGDSVLDLLITWHYYQNYSDIDP 1315
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY-----PLHSN 183
G LT LRSA+VN E A+VA++ L ++L+H LL QI E+ + + + PLH N
Sbjct: 1316 GELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQITEYVKYLSESQDTGKPLHGN 1375
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PKVL D+VES GA+ ID ++D VWK++K LL P ++P+ L+ P+ EL E+C
Sbjct: 1376 ---KGPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPFVTPDKLELPPLRELIELC 1432
Query: 244 QKNKLKVKFVDLWKESTAFH----IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+K ++ FH + ++D LL Y ++ A AA L +E
Sbjct: 1433 DSLGYFIK-DKCTRKGETFHAELRLQLQDSLLIGEGYERTRKAARGEAAHRLLAQLE 1488
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 43/183 (23%)
Query: 60 ESLPNANNLDEEEILGYRFNN----KNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLL 115
ESL A+ L +E + Y N+ +L+ EA T E F S ERLE +GDSVL +
Sbjct: 1034 ESLMLASQLRKE--INYHSNSLGISSSLILEALTTLGSCENF-SLERLELLGDSVLKYAV 1090
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH---------------N 160
+ F +P G L+ R + L + K GL Y+R N
Sbjct: 1091 SCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCTN 1150
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKV-----------------LADIVESTIGAV 203
+P+ + ++ PLH + PKV +AD E+ IGA
Sbjct: 1151 RPV----PCKCGVDTVEVPLHDKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAY 1206
Query: 204 FID 206
++D
Sbjct: 1207 YVD 1209
>gi|449453061|ref|XP_004144277.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Cucumis sativus]
Length = 1359
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 132/237 (55%), Gaps = 15/237 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY F K LL EA T S E + Y+RLE++GDSVL+LL+T + Y ++ P
Sbjct: 986 ESKIGYDFAVKGLLLEAVTHTSDQEIGVNYCYQRLEFLGDSVLDLLITWHYYQNYSDIDP 1045
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY-----PLHSN 183
G LT LRSA+VN E A+VA++ L ++L+H LL QI E+ + + + PLH N
Sbjct: 1046 GELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQITEYVKYLSESQDTGKPLHGN 1105
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PKVL D+VES GA+ ID ++D VWK++K LL P ++P+ L+ P+ EL E+C
Sbjct: 1106 ---KGPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPFVTPDKLELPPLRELIELC 1162
Query: 244 QKNKLKVKFVDLWKESTAFH----IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+K ++ FH + ++D LL Y ++ A AA L +E
Sbjct: 1163 DSLGYFIK-DKCTRKGETFHAELRLQLQDSLLIGEGYERTRKAARGEAAHRLLAQLE 1218
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 43/183 (23%)
Query: 60 ESLPNANNLDEEEILGYRFNN----KNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLL 115
ESL A+ L +E + Y N+ +L+ EA T E F S ERLE +GDSVL +
Sbjct: 764 ESLMLASQLRKE--INYHSNSLGISSSLILEALTTLGSCENF-SLERLELLGDSVLKYAV 820
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH---------------N 160
+ F +P G L+ R + L + K GL Y+R N
Sbjct: 821 SCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCTN 880
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKV-----------------LADIVESTIGAV 203
+P+ + ++ PLH + PKV +AD E+ IGA
Sbjct: 881 RPV----PCKCGVDTVEVPLHDKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAY 936
Query: 204 FID 206
++D
Sbjct: 937 YVD 939
>gi|357140713|ref|XP_003571908.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
3b-like [Brachypodium distachyon]
Length = 1414
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 114/190 (60%), Gaps = 8/190 (4%)
Query: 62 LPNANNLDEEEI-LGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKE 118
LP N++DE E+ L Y F+ K LL EA T PS E + Y+RLE++GD VL+LL+T+
Sbjct: 1076 LPKTNDIDELEVKLKYNFSVKGLLLEAITHPSAQESGVDYCYQRLEFLGDCVLDLLITQY 1135
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY 178
+ + ++ PG LT LRSA V+ E A+ ++ +H +L+H +L EQI E+ L+
Sbjct: 1136 LYVTHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGVLLEQITEYVRFNLEC 1195
Query: 179 PLHSN-----GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
N PKVL DI+ES GA+FID + ++D++W + + LL PMI+PE L
Sbjct: 1196 QGKENEFLQHSTCKVPKVLGDIMESIAGAIFIDTDFNVDLLWNIVEPLLSPMITPENLAL 1255
Query: 234 HPVTELYEVC 243
P EL E+C
Sbjct: 1256 PPYRELLELC 1265
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 35/203 (17%)
Query: 46 DLFVNEKAGDESESESLPNANNL-DEEEILGYRFNNKNLLE----EAFTDPSCPERFFSY 100
DL ++ A D + P N L E+E + R + L+ EA T C E F S
Sbjct: 847 DLIIDTTAEDSFDEMYGPTGNPLLMEKEQIHARVPPELLIHIDILEAITTLRCCETF-SL 905
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE +GDSVL ++ + F YP G L+ +RS V KL + + L Y+R +
Sbjct: 906 ERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNAKLHKHGVWRSLQGYIRDS 965
Query: 161 K----------------------------PLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
P IR+ ++ P K +
Sbjct: 966 AFDPRRWVAPGQISLRPFPCNCGIETSFVPTNGMYIRDDPSFVVGKPCDKGHRWMCSKTI 1025
Query: 193 ADIVESTIGAVFIDCNSSIDIVW 215
+D VE+ +GA ++ I +W
Sbjct: 1026 SDCVEALVGAYYVG-GGIIAALW 1047
>gi|330370549|gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum]
Length = 1655
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 3/202 (1%)
Query: 44 LQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERL 103
L L V E S +PN E +GY F+ K L+EA T S E + Y+RL
Sbjct: 1237 LDPLVVAEVINQASLRTYVPNYEIHMIESKVGYNFSVKFFLQEALTHESLHESY-CYQRL 1295
Query: 104 EYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPL 163
E++GDSVL+LL+T+ + + N+ PG LT LRSA+VN E A+VA++ LHK+L+H L
Sbjct: 1296 EFLGDSVLDLLITQYLYNHHTNIDPGELTDLRSASVNNENFAQVAVRHDLHKHLQHCSTL 1355
Query: 164 LEEQIREFSEAIL--DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKEL 221
L QI E+ ++ D + + PK L D+VES +GA+ ID N ++D VW++ + L
Sbjct: 1356 LSNQISEYVQSFTESDNTTRLDPSIKGPKALGDLVESIVGAILIDTNLNLDKVWRIVEPL 1415
Query: 222 LKPMISPETLKTHPVTELYEVC 243
L P+++P+ L+ P EL E+C
Sbjct: 1416 LSPIVTPDKLELPPFRELNELC 1437
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 60 ESLPNANNLDEEEILGYRFNN----KNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLL 115
ESL AN L EE + + +N +++ EA T C E F S ERLE +GDSVL +
Sbjct: 1043 ESLMLANQLREE--INFCSSNIDIPSSMILEALTTLRCCESF-SMERLELLGDSVLKYAV 1099
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+ F YPN G L+ RS V L ++ + Y+R
Sbjct: 1100 SCHLFLRYPNKHEGQLSARRSLAVCNSTLHKLGTDHKIQGYIR 1142
>gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens]
Length = 1445
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 132/245 (53%), Gaps = 22/245 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLP-- 127
E +L Y+F NK LL EA T SC Y+RL ++GD+VL+ L+TK + NL
Sbjct: 1178 EILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLGFLGDAVLDFLITKHFYANSANLKRD 1237
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----------SEAIL 176
PG LT LRSA VN E ARVA++ LH YL HN L ++ ++ SEA L
Sbjct: 1238 PGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTDVCALSEAFL 1297
Query: 177 DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV 236
L + + +VL+D+VES GAVF+D +D VW VFK+LLKP+++P TL+ P+
Sbjct: 1298 ---LSKHLSCSSMQVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPI 1354
Query: 237 TELYEVCQKNKL-----KVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
EL+E+CQ K K K + + ++D+ + P ++ A AA A
Sbjct: 1355 RELWELCQTEKFGEPNYKKKREAMGDFDMTVTVELKDETITGVGRKPDEKSARKVAAIQA 1414
Query: 292 LNNIE 296
L ++
Sbjct: 1415 LETLK 1419
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
NL+ EA T C E F S E LE +GD+ L + +++ F L+ L G L++ R+ +
Sbjct: 1012 NLMLEAITTSKCQESF-SLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNLICN 1070
Query: 142 EKLARVAIKLGLHKYLRHNKPLLEE-----QIREFSEAILDYPLHSNGLVDAPKVLADIV 196
+ L R+ + G+ Y+R + +E ++RE + PL K +AD+
Sbjct: 1071 KMLERLGRERGIMNYIRDTQFSPKEWATPGRVRETQCKL--PPLQG-------KTIADVF 1121
Query: 197 ESTIGAVFI 205
E+ IGA +I
Sbjct: 1122 EALIGAHYI 1130
>gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group]
Length = 1570
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 120/193 (62%), Gaps = 12/193 (6%)
Query: 61 SLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTK 117
SL N+++E E L Y F+ K LL EA T PS E + Y+RLE++GDSVL+LLLT+
Sbjct: 1166 SLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTR 1225
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL- 176
+ + ++ PG LT LRSA V+ E A+ ++ +H +L+H +L EQI E+ + L
Sbjct: 1226 HLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLE 1285
Query: 177 ------DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
++ H+ V PKVL DI+ES GAVFID + ++D+VW++F+ LL P+I+P+
Sbjct: 1286 CQGKESEFLQHTTCKV--PKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDK 1343
Query: 231 LKTHPVTELYEVC 243
L P EL E+C
Sbjct: 1344 LALPPYRELLELC 1356
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 29/152 (19%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
L+ EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V
Sbjct: 979 TLILEAITTLRCCETF-SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCN 1037
Query: 142 EKLARVAIKLGLHKYLRHNK----------------------------PLLEEQIREFSE 173
L + I L Y+R N P IR+
Sbjct: 1038 ATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPS 1097
Query: 174 AILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
+ P K ++D VE+ +GA ++
Sbjct: 1098 FFVGKPCDRGHRWMCSKTISDCVEALVGAYYV 1129
>gi|251764789|sp|Q7XD96.2|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName:
Full=Dicer-like protein 3b; Short=OsDCL3b
Length = 1637
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 120/193 (62%), Gaps = 12/193 (6%)
Query: 61 SLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTK 117
SL N+++E E L Y F+ K LL EA T PS E + Y+RLE++GDSVL+LLLT+
Sbjct: 1234 SLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTR 1293
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL- 176
+ + ++ PG LT LRSA V+ E A+ ++ +H +L+H +L EQI E+ + L
Sbjct: 1294 HLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLE 1353
Query: 177 ------DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
++ H+ V PKVL DI+ES GAVFID + ++D+VW++F+ LL P+I+P+
Sbjct: 1354 CQGKESEFLQHTTCKV--PKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDK 1411
Query: 231 LKTHPVTELYEVC 243
L P EL E+C
Sbjct: 1412 LALPPYRELLELC 1424
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 29/152 (19%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
L+ EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V
Sbjct: 1047 TLILEAITTLRCCETF-SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCN 1105
Query: 142 EKLARVAIKLGLHKYLRHNK----------------------------PLLEEQIREFSE 173
L + I L Y+R N P IR+
Sbjct: 1106 ATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPS 1165
Query: 174 AILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
+ P K ++D VE+ +GA ++
Sbjct: 1166 FFVGKPCDRGHRWMCSKTISDCVEALVGAYYV 1197
>gi|357448551|ref|XP_003594551.1| Endoribonuclease Dicer [Medicago truncatula]
gi|355483599|gb|AES64802.1| Endoribonuclease Dicer [Medicago truncatula]
Length = 1418
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 132/235 (56%), Gaps = 9/235 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +L Y F +++LL EA T S P+ Y+RLEY+GDSVL+ L+T + +YP + P
Sbjct: 1182 ESLLKYSFRDRSLLVEALTHGSYMLPDVPRCYQRLEYLGDSVLDYLITMHLYRVYPGMSP 1241
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT +RSA+VN + A AIK+ LHK++ H L + I + D S G
Sbjct: 1242 GQLTDMRSASVNNDCYAMSAIKVQLHKHVLHASQELHKHIVATLDKFDDQSSSSFGWESE 1301
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
PKVL DI+ES GA+F+D + VWK + LL+P+++P+TL HP+ EL E+CQK
Sbjct: 1302 ATFPKVLGDIIESLAGAIFVDSGYDKEAVWKSIRPLLEPLVTPDTLTIHPIRELNELCQK 1361
Query: 246 -NKLKVKFVDLWKESTAFHI-FIEDQLLGRGAY--APKKEIAHNRAAKDALNNIE 296
N K K + T+ I I D ++ + Y + K+ A A K L++++
Sbjct: 1362 MNYTKEKTLSRNDGVTSCKIEVIADGVIHQFEYKGSTDKKTATRLACKGVLHSLQ 1416
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YE LE +GDS L ++++ F +Y N G L+ R + L+
Sbjct: 1011 EAMTTKSCKETF-HYESLETLGDSFLKYAVSQQLFNMYQNHHEGLLSVKREKIICNAALS 1069
Query: 146 RVAIKLGLHKYLRHNK--------PLLEEQIREFSEAILD-YPLHSNGLVDAP-KVLADI 195
++ L ++R++ P ++ + + E + + +++ G KV+AD+
Sbjct: 1070 KLGCDFRLPGFIRNDPFDPKTWIIPGVKSESFKLEETVFNGRKIYTRGDRKLKRKVVADV 1129
Query: 196 VESTIGA 202
VE+ IGA
Sbjct: 1130 VEALIGA 1136
>gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group]
gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group]
gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed
[Oryza sativa Japonica Group]
gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group]
Length = 1458
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 120/193 (62%), Gaps = 12/193 (6%)
Query: 61 SLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTK 117
SL N+++E E L Y F+ K LL EA T PS E + Y+RLE++GDSVL+LLLT+
Sbjct: 1097 SLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTR 1156
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL- 176
+ + ++ PG LT LRSA V+ E A+ ++ +H +L+H +L EQI E+ + L
Sbjct: 1157 HLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLE 1216
Query: 177 ------DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
++ H+ V PKVL DI+ES GAVFID + ++D+VW++F+ LL P+I+P+
Sbjct: 1217 CQGKESEFLQHTTCKV--PKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDK 1274
Query: 231 LKTHPVTELYEVC 243
L P EL E+C
Sbjct: 1275 LALPPYRELLELC 1287
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 56/148 (37%), Gaps = 29/148 (19%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V L
Sbjct: 914 EAITTLRCCETF-SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLH 972
Query: 146 RVAIKLGLHKYLRHNK----------------------------PLLEEQIREFSEAILD 177
+ I L Y+R N P IR+ +
Sbjct: 973 KHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSFFVG 1032
Query: 178 YPLHSNGLVDAPKVLADIVESTIGAVFI 205
P K ++D VE+ +GA ++
Sbjct: 1033 KPCDRGHRWMCSKTISDCVEALVGAYYV 1060
>gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group]
Length = 1093
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 120/193 (62%), Gaps = 12/193 (6%)
Query: 61 SLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTK 117
SL N+++E E L Y F+ K LL EA T PS E + Y+RLE++GDSVL+LLLT+
Sbjct: 720 SLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTR 779
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL- 176
+ + ++ PG LT LRSA V+ E A+ ++ +H +L+H +L EQI E+ + L
Sbjct: 780 HLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLE 839
Query: 177 ------DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
++ H+ V PKVL DI+ES GAVF+D + ++D+VW++F+ LL P+I+P+
Sbjct: 840 CQGKESEFLQHTTCKV--PKVLGDIMESIAGAVFLDTDFNVDMVWEIFEPLLSPLITPDK 897
Query: 231 LKTHPVTELYEVC 243
L P EL E+C
Sbjct: 898 LALPPYRELLELC 910
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 29/148 (19%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V L
Sbjct: 537 EAITTLRCCETF-SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLH 595
Query: 146 RVAIKLGLHKYLRHNK----------------------------PLLEEQIREFSEAILD 177
+ I L Y+R N P IR+ ++
Sbjct: 596 KHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSFVVG 655
Query: 178 YPLHSNGLVDAPKVLADIVESTIGAVFI 205
P K ++D VE+ +GA ++
Sbjct: 656 KPCDRGHRWMCSKTISDCVEALVGAYYV 683
>gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
lyrata]
gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
lyrata]
Length = 1521
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 131/244 (53%), Gaps = 11/244 (4%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
+P + L E E + + F+ K LL+EA T S E + SYERLE++GDSVL+ L+T+ F
Sbjct: 1133 IPKDDELTELERKIQHEFSAKFLLKEAITHSSVHESY-SYERLEFLGDSVLDFLITRHLF 1191
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--SEAILDY 178
Y PG +T LRSA VN E A+VA+K LH +L+ +LE QI E+ S D
Sbjct: 1192 NTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHIHLQRCATVLENQINEYLMSFQKPDE 1251
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
S + PK L D+VES GA+ ID +D VW+VF+ LL P+++P+ L+ P E
Sbjct: 1252 TGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRE 1311
Query: 239 LYEVCQKNKLKVKFV-----DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
L E+C + L F D K H+ + D LL ++A +AA L
Sbjct: 1312 LNELC--DSLGYFFREKCSNDGVKAQATIHLQLGDVLLTGDGSEQTNKLALGKAASHLLT 1369
Query: 294 NIER 297
+E+
Sbjct: 1370 QLEK 1373
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 60 ESLPNANNLDEE---EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLT 116
ESL A+ L EE I + ++ ++LE A T +CPE F S ERLE +GDSVL + +
Sbjct: 921 ESLMLASQLREEIDCSIDNFSISSTSILE-AVTTLTCPEAF-SMERLELLGDSVLKYVAS 978
Query: 117 KEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
F YP+ G L+R R + ++ L R+A L Y+R+
Sbjct: 979 CYLFLKYPDKDEGQLSRQRQSIISNSNLHRLATNRKLQGYIRNG 1022
>gi|356533095|ref|XP_003535104.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
Length = 1414
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 140/250 (56%), Gaps = 13/250 (5%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
+ E L N + L+ + L Y F++++LL EA T S PE Y+RLE++GDSVL+ L+
Sbjct: 1138 QPEKLVNVSFLESQ--LNYSFHDRSLLVEAVTHGSYMLPEVPRCYQRLEFLGDSVLDYLI 1195
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIR----EF 171
T + YP + PG LT +RSA+VN + A AIK GLHK++ H L + +F
Sbjct: 1196 TWHLYNKYPGMTPGQLTDMRSASVNNDCYAWSAIKHGLHKHVLHASQELHMHVSATLNKF 1255
Query: 172 SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
+ PKVL DIVES GA+ +D + ++VW+ + LL+P+++PETL
Sbjct: 1256 DKLSSLSTFGYEAETSLPKVLGDIVESLAGAILVDSGYNKEVVWQSIRPLLEPLVTPETL 1315
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKES--TAFHIFIE-DQLLGRGAYAPK--KEIAHNR 286
K HP+ EL E+CQK K+ D+ ++ T + + +E D ++ + Y ++ A
Sbjct: 1316 KLHPIRELNELCQKRSYKIILEDVSRKDGLTYYRMEVEADGIIHKYEYKGDALRDTAKKI 1375
Query: 287 AAKDALNNIE 296
K+ LN+++
Sbjct: 1376 VCKEILNSLK 1385
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F YE LE +GDS L +++ F Y N G L+ R ++ L
Sbjct: 978 EAITTKRCKEAF-HYESLETLGDSFLKYAASQQLFKTYHNHHEGLLSLKREKIISNAALC 1036
Query: 146 RVAIKLGLHKYLRHNKP-------LLEEQIREFSEAIL---DYPLHSNGLVD-APKVLAD 194
++ GL ++R N+P + ++ R F L ++ +G K++AD
Sbjct: 1037 KLGCSSGLPGFIR-NEPFDPNTWIIPGDKPRSFKLKELVAKGKTIYVSGKRKLRQKIVAD 1095
Query: 195 IVESTIGA 202
+VE+ IGA
Sbjct: 1096 VVEALIGA 1103
>gi|356532427|ref|XP_003534774.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
Length = 1421
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 132/237 (55%), Gaps = 11/237 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E L Y F++ +LL EA T S PE Y+RLE++GDSVL+ L+T + YP + P
Sbjct: 1182 ESQLKYSFHDHSLLVEALTHGSYMLPEVPRCYQRLEFLGDSVLDYLITWHLYNEYPGMSP 1241
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI----REFSEAILDYPLHSNG 184
G LT +R+A+VN + A AIK GLHK++ H L + I F +
Sbjct: 1242 GQLTDMRAASVNNDCYAWSAIKHGLHKHVLHASQELHKHIAVTLNNFDKLSSSSTFGYES 1301
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
PKVL DI+ES GA+ +D + ++VW+ + LL+P+++PETLK HP+ EL E+CQ
Sbjct: 1302 EASPPKVLGDIIESLAGAILVDSGFNKEVVWQSIRPLLEPLVTPETLKLHPIRELNELCQ 1361
Query: 245 KNKLKVKFVDLWKES--TAFHIFIE-DQLLGRGAYAPK--KEIAHNRAAKDALNNIE 296
K K+ D+ ++ T + + +E D ++ Y ++ A A K+ LN+++
Sbjct: 1362 KRSYKIVLEDVSRKDGVTNYRMKVEADGVIHEYEYTGPALRDTAKKIACKEILNSLK 1418
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 23/133 (17%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F YE LE +GDS L +++ F Y N G L+ R ++ L
Sbjct: 1011 EAITTKRCNEAF-HYESLETLGDSFLKYAASQQLFKTYKNHHEGLLSVKREKIISNAALC 1069
Query: 146 RVAIKLGLHKYLRHNKPL----------------LEEQIREFSEAILDYPLHSNGLVDAP 189
++ GL ++R N+P LEE + + + +H ++
Sbjct: 1070 KLGCSSGLPGFIR-NEPFDPHAWTIPGDKPESLKLEELVIKGKKIY----VHGKRKLNR- 1123
Query: 190 KVLADIVESTIGA 202
K++AD+VE+ IGA
Sbjct: 1124 KIIADVVEALIGA 1136
>gi|334185717|ref|NP_001154662.2| protein dicer-like 3 [Arabidopsis thaliana]
gi|322518661|sp|Q9LXW7.2|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName:
Full=Dicer-like protein 3; Short=AtDCL3
gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana]
Length = 1580
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 131/242 (54%), Gaps = 7/242 (2%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
+P + L E E + + F+ K LL+EA T S E + SYERLE++GDSVL+ L+T+ F
Sbjct: 1192 IPKEDELIELERKIQHEFSAKFLLKEAITHSSLRESY-SYERLEFLGDSVLDFLITRHLF 1250
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--SEAILDY 178
Y PG +T LRSA VN E A+VA+K LH +L+ +LE QI ++ S D
Sbjct: 1251 NTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDE 1310
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
S + PK L D+VES GA+ ID +D VW+VF+ LL P+++P+ L+ P E
Sbjct: 1311 TGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRE 1370
Query: 239 LYEVCQKNK--LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
L E+C +VK D K + ++D LL ++A +AA L +
Sbjct: 1371 LNELCDSLGYFFRVKCSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQL 1430
Query: 296 ER 297
E+
Sbjct: 1431 EK 1432
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 60 ESLPNANNLDEE---EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLT 116
ESL A+ L EE I + ++ ++LE A T +CPE F S ERLE +GDSVL + +
Sbjct: 980 ESLMLASQLREEIDCSIDNFSISSTSILE-AVTTLTCPESF-SMERLELLGDSVLKYVAS 1037
Query: 117 KEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
F YP+ G L+R R + ++ L R+ L Y+R+
Sbjct: 1038 CHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNG 1081
>gi|15229816|ref|NP_189978.1| protein dicer-like 3 [Arabidopsis thaliana]
gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana]
gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana]
gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana]
Length = 1531
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 131/242 (54%), Gaps = 7/242 (2%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
+P + L E E + + F+ K LL+EA T S E + SYERLE++GDSVL+ L+T+ F
Sbjct: 1143 IPKEDELIELERKIQHEFSAKFLLKEAITHSSLRESY-SYERLEFLGDSVLDFLITRHLF 1201
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--SEAILDY 178
Y PG +T LRSA VN E A+VA+K LH +L+ +LE QI ++ S D
Sbjct: 1202 NTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDE 1261
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
S + PK L D+VES GA+ ID +D VW+VF+ LL P+++P+ L+ P E
Sbjct: 1262 TGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRE 1321
Query: 239 LYEVCQKNK--LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
L E+C +VK D K + ++D LL ++A +AA L +
Sbjct: 1322 LNELCDSLGYFFRVKCSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQL 1381
Query: 296 ER 297
E+
Sbjct: 1382 EK 1383
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 60 ESLPNANNLDEE---EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLT 116
ESL A+ L EE I + ++ ++LE A T +CPE F S ERLE +GDSVL + +
Sbjct: 931 ESLMLASQLREEIDCSIDNFSISSTSILE-AVTTLTCPESF-SMERLELLGDSVLKYVAS 988
Query: 117 KEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
F YP+ G L+R R + ++ L R+ L Y+R+
Sbjct: 989 CHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNG 1032
>gi|334185719|ref|NP_001154663.2| protein dicer-like 3 [Arabidopsis thaliana]
gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana]
Length = 1570
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 131/242 (54%), Gaps = 7/242 (2%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
+P + L E E + + F+ K LL+EA T S E + SYERLE++GDSVL+ L+T+ F
Sbjct: 1182 IPKEDELIELERKIQHEFSAKFLLKEAITHSSLRESY-SYERLEFLGDSVLDFLITRHLF 1240
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--SEAILDY 178
Y PG +T LRSA VN E A+VA+K LH +L+ +LE QI ++ S D
Sbjct: 1241 NTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDE 1300
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
S + PK L D+VES GA+ ID +D VW+VF+ LL P+++P+ L+ P E
Sbjct: 1301 TGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRE 1360
Query: 239 LYEVCQKNK--LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
L E+C +VK D K + ++D LL ++A +AA L +
Sbjct: 1361 LNELCDSLGYFFRVKCSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQL 1420
Query: 296 ER 297
E+
Sbjct: 1421 EK 1422
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 60 ESLPNANNLDEE---EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLT 116
ESL A+ L EE I + ++ ++LE A T +CPE F S ERLE +GDSVL + +
Sbjct: 970 ESLMLASQLREEIDCSIDNFSISSTSILE-AVTTLTCPESF-SMERLELLGDSVLKYVAS 1027
Query: 117 KEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
F YP+ G L+R R + ++ L R+ L Y+R+
Sbjct: 1028 CHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNG 1071
>gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group]
Length = 1116
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 119/193 (61%), Gaps = 12/193 (6%)
Query: 61 SLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTK 117
SL N+++E E L Y F+ K LL EA T PS E + Y+RLE++GDSVL+LLLT+
Sbjct: 714 SLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTR 773
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL- 176
+ + ++ PG LT LRSA V+ E A+ ++ +H +L+H +L QI E+ + L
Sbjct: 774 HLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLGQITEYVRSNLE 833
Query: 177 ------DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
++ H+ V PKVL DI+ES GAVF+D + ++D+VW++F+ LL P+I+P+
Sbjct: 834 CQGKESEFLQHTTCKV--PKVLGDIMESIAGAVFLDTDFNVDMVWEIFEPLLSPLITPDK 891
Query: 231 LKTHPVTELYEVC 243
L P EL E+C
Sbjct: 892 LALPPYRELLELC 904
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 29/152 (19%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
L+ EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V
Sbjct: 527 TLILEAITTLRCCETF-SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCN 585
Query: 142 EKLARVAIKLGLHKYLRHNK----------------------------PLLEEQIREFSE 173
L + I L Y+R N P IR+
Sbjct: 586 ATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPS 645
Query: 174 AILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
++ P K ++D VE+ +GA ++
Sbjct: 646 FVVGKPCDRGHRWMCSKTISDCVEALVGAYYV 677
>gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
Length = 698
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 10/236 (4%)
Query: 61 SLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKE 118
SL N N+ E EE++GY F +K LL +AF PS + Y+R+E++GD+VL+ L+
Sbjct: 245 SLMNYMNISELEELIGYTFKHKGLLLQAFVHPSFNKHSGGCYQRMEFLGDAVLDYLMASY 304
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY 178
+ YP+L PG LT L+S +N A VA+K +HKYL + L I +F + +
Sbjct: 305 LYSAYPDLKPGQLTDLKSLALNNNSFAYVAVKKSIHKYLIKDSKSLTAAINKFQNYV-NL 363
Query: 179 PLHSNGLVD---APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP 235
L++ PKVL DIVES +GAV +D +++ VWK+ LLKP++S + P
Sbjct: 364 SSSEKDLLEEPTCPKVLGDIVESCVGAVLLDSGFNLNHVWKLMLMLLKPILSFCGMHIDP 423
Query: 236 VTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
+ EL E+CQ N ++ +++ FH+ +E + G+ A NR +KDA
Sbjct: 424 MRELREICQYNGFELGLPKPTEDNGEFHVKVEVNIDGKMISC----TAANRNSKDA 475
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C ER S ERLE +GD+ L ++ + F Y L G LTR RS V+ L
Sbjct: 67 EALTTERCLERI-SLERLEVLGDAFLKYVVGRHNFISYEGLDEGQLTRRRSDIVSNSNLY 125
Query: 146 RVAIKLGLHKYLR--HNKPL----LEEQIREFSEAILDYPLHSNGLVDAP---------- 189
++I+ L Y+R H +P L + + LH +D
Sbjct: 126 ELSIRRNLQVYIRDQHFEPTQFFALGRPCKVVCNPDREATLHPKN-IDPDRRENCNLRCT 184
Query: 190 --------KVLADIVESTIGAVFIDCN 208
K +AD+VES +GA ++C
Sbjct: 185 KSHHWLHRKTIADVVESLLGAFLVECG 211
>gi|356509849|ref|XP_003523657.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
Length = 1671
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 133/234 (56%), Gaps = 7/234 (2%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY F+ K LL EA T S E YERLE++GDSVL+LL+T + + ++ P
Sbjct: 1273 EKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITWHLYQSHTDIDP 1332
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT LRSA+VN + A+VA++ LH++L H+ LL QI E+ + I + S + A
Sbjct: 1333 GVLTDLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLLSQISEYVKVISESDPRSLPSISA 1392
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
PK L D+VES +GA+ ID S+D VW VF LL P+++P+ L+ P EL E+C
Sbjct: 1393 PKALGDVVESIVGAILIDTKLSLDQVWNVFYSLLSPIVTPDKLELPPFRELNELCDSLGY 1452
Query: 249 KVKFVD-LWKESTAFHIFIEDQ----LLGRGAYAPKKEIAHNRAAKDALNNIER 297
VK + K +A H+ + Q LL R K+ A AA L ++E+
Sbjct: 1453 FVKVKENCEKVGSAMHVEVSVQLPNALLVREGKGANKKTAKGEAAFYLLKDLEK 1506
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 32/167 (19%)
Query: 71 EEILGY--RFN-NKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EEI G +FN +L+ E+ T C E F S ERLE +GDSVL +++ F YP
Sbjct: 1061 EEIDGQTSKFNIRSSLILESLTTLRCSESF-SMERLELLGDSVLKYVVSCHLFLKYPKKH 1119
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-----------L 176
G L+ RS+ V L ++ L Y+R + + +I L
Sbjct: 1120 EGQLSARRSSAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHLVCCDCGLETL 1179
Query: 177 DYPLHSNGLVDAPKV-----------------LADIVESTIGAVFID 206
+ PL + + PKV +AD VE+ IGA ++D
Sbjct: 1180 EVPLDAKFHTEDPKVVVGKFCDRGHCWMCSKTIADCVEALIGAYYVD 1226
>gi|356518185|ref|XP_003527762.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
Length = 455
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 132/234 (56%), Gaps = 9/234 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F+ K LL EA T S E YERL+++GDSVL+LL+T + + ++ P
Sbjct: 189 EKKIEYEFSVKGLLLEAITHLSEKELGIGCCYERLKFLGDSVLDLLITWHLYQSHTDIDP 248
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G L LRSA+VN + A+VA++ LH++L H+ LL QI E+ + I + S + A
Sbjct: 249 GVLADLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLVSQILEYVKVISESDPRSLPSIRA 308
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK--N 246
PK L D+VES +G + I S+D VW VF LL P+++P+ L+ P EL E+C +
Sbjct: 309 PKALGDVVESIVGPILIGTKLSLDQVWNVFYPLLSPIVTPDKLELPPFRELNELCDSLGH 368
Query: 247 KLKVKFVDLWKESTAFHIFIEDQ----LLGRGAYAPKKEIAHNRAAKDALNNIE 296
+KVK + K +A H+ + Q LL R P K+ A AA L ++E
Sbjct: 369 FVKVK-ENCEKMGSAMHVEVSVQLPNALLVREGKGPNKKTAKGEAAFHLLKDLE 421
>gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera]
Length = 1688
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 125/208 (60%), Gaps = 11/208 (5%)
Query: 44 LQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE--RFFSY 100
L+ V+E S +P AN ++ E +GY F+ K LL EA T + E + Y
Sbjct: 1242 LEPSLVDEAIATASLRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCY 1301
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
+RLE++GDSVL++L+T + + ++ PG LT LRSA+VN E A+VA++ L ++L+H
Sbjct: 1302 QRLEFLGDSVLDVLITWHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHC 1361
Query: 161 KPLLEEQIREFSEAI-----LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVW 215
LL QI+E+++ + + PL S PK L D+VES GA+ ID +++ VW
Sbjct: 1362 SGLLLGQIKEYAKYLSGSDDVPNPLQS---TKGPKALGDLVESIAGAILIDTKLNLNEVW 1418
Query: 216 KVFKELLKPMISPETLKTHPVTELYEVC 243
++FK LL P+++P+ L+ P+ EL E+C
Sbjct: 1419 RIFKPLLSPIVTPDKLELPPLRELNELC 1446
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 60 ESLPNANNLDEEEIL--GYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
ESL A+ L EE G + ++ +L+ EA T C E F S ERLE +GDSVL ++
Sbjct: 1049 ESLMLASQLREEIAFTTGSQISS-SLILEAITTLRCSESF-SMERLELLGDSVLKYAVSC 1106
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
F YP G L+ RS V L ++ L Y+R
Sbjct: 1107 HLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIR 1147
>gi|359475987|ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
Length = 1648
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 125/208 (60%), Gaps = 11/208 (5%)
Query: 44 LQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPE--RFFSY 100
L+ V+E S +P AN ++ E +GY F+ K LL EA T + E + Y
Sbjct: 1232 LEPSLVDEAIATASLRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCY 1291
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
+RLE++GDSVL++L+T + + ++ PG LT LRSA+VN E A+VA++ L ++L+H
Sbjct: 1292 QRLEFLGDSVLDVLITWHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHC 1351
Query: 161 KPLLEEQIREFSEAI-----LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVW 215
LL QI+E+++ + + PL S PK L D+VES GA+ ID +++ VW
Sbjct: 1352 SGLLLGQIKEYAKYLSGSDDVPNPLQS---TKGPKALGDLVESIAGAILIDTKLNLNEVW 1408
Query: 216 KVFKELLKPMISPETLKTHPVTELYEVC 243
++FK LL P+++P+ L+ P+ EL E+C
Sbjct: 1409 RIFKPLLSPIVTPDKLELPPLRELNELC 1436
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 60 ESLPNANNLDEEEIL--GYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
ESL A+ L EE G + ++ +L+ EA T C E F S ERLE +GDSVL ++
Sbjct: 1039 ESLMLASQLREEIAFTTGSQISS-SLILEAITTLRCSESF-SMERLELLGDSVLKYAVSC 1096
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
F YP G L+ RS V L ++ L Y+R
Sbjct: 1097 HLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIR 1137
>gi|379987680|gb|AFD22620.1| dicer-like 3 protein, partial [Nicotiana attenuata]
Length = 596
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 139/241 (57%), Gaps = 10/241 (4%)
Query: 63 PNANNLDEEEI-LGYRFNNKNLLEEAFTDPSCPER--FFSYERLEYVGDSVLNLLLTKEQ 119
P A ++++ E+ L Y+F+ K LL EA T + E ++Y+RLE++GDSVL++L+T
Sbjct: 183 PKAKDIEDLELKLSYKFSVKGLLLEAITHATVLEVDVSYNYQRLEFLGDSVLDILITWYL 242
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD-Y 178
+ + ++ PG LT LRSA+VN + A A+K LH +L+H+ LE +I F + + D
Sbjct: 243 YQKHKDIDPGELTDLRSASVNNDNFAYAAVKRELHVHLQHHSGYLESEISAFVKLVSDSC 302
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
L N APKVL D+VES GA+ +D ++D VWK+ K LL P+++P+ L+ P+ E
Sbjct: 303 SLQGN---KAPKVLGDLVESIAGAILVDTKLNLDEVWKIVKPLLSPIVTPDKLELPPLRE 359
Query: 239 LYEVCQKNKLKVKFVDLWKESTA---FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
L E+C +K + K T + ++D+LL ++ A +AA L ++
Sbjct: 360 LIELCDSLGYFLKDHCMVKGDTVHAELRLQLKDELLVAEGCGQTRKNAKGQAALKLLKDL 419
Query: 296 E 296
E
Sbjct: 420 E 420
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
FS ERLE +GDSVL ++ F YP G L+ RS V+ L +V L Y+
Sbjct: 8 FSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSDQRSWAVSNSTLHKVGTSRHLQGYI 67
Query: 158 R 158
R
Sbjct: 68 R 68
>gi|357167959|ref|XP_003581414.1| PREDICTED: endoribonuclease Dicer homolog 4-like [Brachypodium
distachyon]
Length = 1627
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 138/245 (56%), Gaps = 10/245 (4%)
Query: 61 SLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKE 118
SL N N+ E EE++GY+F +K L+ EAF PS + Y++LE++GD+VL L+T
Sbjct: 1171 SLMNLINVAELEELIGYKFKHKGLIIEAFVHPSFNKHSGGCYQKLEFLGDAVLEYLMTSY 1230
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY 178
+ YP+L PG +T L+S V + A VAI+ +HKY+ + L + + +F E +
Sbjct: 1231 LYSAYPDLKPGEITDLKSLAVCNDSFAYVAIQKCIHKYIIKDSNHLTKAVSKF-ENYIKL 1289
Query: 179 PLHSNGLVD---APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP 235
P LV+ PKVL DIVES + AV +D +++ VWK+ LLKP++S + +P
Sbjct: 1290 PNSEKDLVEEPACPKVLGDIVESCVAAVLLDSGFNLNYVWKLVLMLLKPVLSFSGMHMNP 1349
Query: 236 VTELYEVCQKNKLKVKFVDLWKESTAFHIFIE----DQLLGRGAYAPKKEIAHNRAAKDA 291
+ E+ E+CQ N+L++ K +H+ +E ++ A ++A AA++
Sbjct: 1350 MREIRELCQCNELELGLPKPMKADGEYHVKVEVNINSTMISCTAANRNSKVARKLAARET 1409
Query: 292 LNNIE 296
L+ ++
Sbjct: 1410 LSKLK 1414
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 35/169 (20%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
S P A+ + IL EA T C ER S ER E +GD+ L ++ + F
Sbjct: 979 SFPEASQISASAIL-----------EAITTERCLERI-SLERFEVLGDAFLKYVVGRHNF 1026
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNK--PL----LEEQIREFSEA 174
Y L G LTR RS VN L +++K L Y+R + P L + A
Sbjct: 1027 MSYEGLDEGQLTRRRSDIVNNSNLHELSVKRNLQVYIRDQQFEPTQFFALGRPCKVVCHA 1086
Query: 175 ILDYPLHSNGL-VDAP----------------KVLADIVESTIGAVFID 206
++ +H + D P K +AD+VES +GA ++
Sbjct: 1087 DMEVSIHQKNIDPDRPENCNVRCTKSHHWLHKKTIADVVESLLGAFLVE 1135
>gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis]
Length = 1388
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 117/203 (57%), Gaps = 16/203 (7%)
Query: 54 GDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVL 111
G E E N +L E +L Y F + LL EA T S PE Y+RLE++GDSVL
Sbjct: 1132 GFEMNPEKYVNICHL--ESLLKYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVL 1189
Query: 112 NLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI--- 168
+ L+T + YP + PG LT +RSA+VN + A+ A++ GLHKY+ H L + I
Sbjct: 1190 DYLITVHLYEKYPGMSPGLLTDMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVST 1249
Query: 169 ----REF-SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK 223
+EF SE+ + + PKVL D++ES GA+F+D + ++V+ + LL+
Sbjct: 1250 VANCKEFSSESTFGW----ESEISFPKVLGDVIESLAGAIFVDSGYNKEVVFNSIRPLLE 1305
Query: 224 PMISPETLKTHPVTELYEVCQKN 246
P+I+PET++ HP EL E+CQK
Sbjct: 1306 PLITPETIRLHPTRELTELCQKQ 1328
>gi|359476600|ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-like [Vitis vinifera]
Length = 1394
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 131/235 (55%), Gaps = 10/235 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E IL Y F + +LL EA T S PE Y+RLE++GD+VL+ L+T + YP + P
Sbjct: 1153 ESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSP 1212
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT LRSA+VN + A+ A+K LH+++ H+ L I P+ S ++
Sbjct: 1213 GLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFGWES 1272
Query: 189 ----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
PKVL D++ES GA+ +D + + ++V++ + LL+P+I+PET+K HP EL E+CQ
Sbjct: 1273 ESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELGELCQ 1332
Query: 245 KNKLKVKFVDLWKESTAFHIFIEDQLLG---RGAYAPKKEIAHNRAAKDALNNIE 296
K +K V + + A + IE + G + K A A+K+ L +++
Sbjct: 1333 KEHYDIKRVVVSQNGKA-SVTIEVEANGAKHKHTSTSDKRTATKLASKEVLKSLK 1386
>gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera]
Length = 1340
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 131/235 (55%), Gaps = 10/235 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E IL Y F + +LL EA T S PE Y+RLE++GD+VL+ L+T + YP + P
Sbjct: 1099 ESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSP 1158
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT LRSA+VN + A+ A+K LH+++ H+ L I P+ S ++
Sbjct: 1159 GLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFGWES 1218
Query: 189 ----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
PKVL D++ES GA+ +D + + ++V++ + LL+P+I+PET+K HP EL E+CQ
Sbjct: 1219 ESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELGELCQ 1278
Query: 245 KNKLKVKFVDLWKESTAFHIFIEDQLLG---RGAYAPKKEIAHNRAAKDALNNIE 296
K +K V + + A + IE + G + K A A+K+ L +++
Sbjct: 1279 KEHYDIKRVVVSQNGKA-SVTIEVEANGAKHKHTSTSDKRTATKLASKEVLKSLK 1332
>gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa]
gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa]
Length = 1408
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 6/187 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +L Y F + +LL EA T S PE Y+RLE++GD+VL+ L+T + YP + P
Sbjct: 1159 ESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKEYPGMSP 1218
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN----G 184
G LT LRSA+VN + A+ A+K LHK++ H L + I E +E L S
Sbjct: 1219 GLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGSTFGWES 1278
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
PKVL D++ES GA+ +D + +IV++ + LL+P+I+P T++ HP EL E+CQ
Sbjct: 1279 ETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEPLITPATVRLHPARELSELCQ 1338
Query: 245 KNKLKVK 251
K K
Sbjct: 1339 KQHFDYK 1345
>gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa]
Length = 1468
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 6/187 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +L Y FN+ +LL EA T S PE Y+RLE++GD+VL+ L+T + YP + P
Sbjct: 1220 ESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKEYPGMSP 1279
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT LRSA+VN + A A+K+GL +++ H L + I + I ++ L S ++
Sbjct: 1280 GLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLESTFGWES 1339
Query: 189 ----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
PKVL D++ES GA+ +D + ++V++ + LL+P+I+PETL+ PV EL E+CQ
Sbjct: 1340 ETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRLQPVRELNELCQ 1399
Query: 245 KNKLKVK 251
+ K
Sbjct: 1400 RQHFDYK 1406
>gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
Length = 1296
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 130/235 (55%), Gaps = 10/235 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E IL Y F + +LL E+ T S PE Y+RLE++GD+VL+ L+T + YP + P
Sbjct: 1055 ESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSP 1114
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI----REFSEAILDYPLHSNG 184
G LT LRSA+VN + A+ A+K LH+++ H+ L I +F + +
Sbjct: 1115 GLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXESTFGWES 1174
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
PKVL D++ES GA+ +D + + ++V++ + LL+P+I+PET+K HP EL E+CQ
Sbjct: 1175 ESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELXELCQ 1234
Query: 245 KNKLKVKFVDLWKESTAFHIFIEDQLLG---RGAYAPKKEIAHNRAAKDALNNIE 296
K +K V + + A + IE + G + K A A+K+ L +++
Sbjct: 1235 KEHYXIKRVVVSQNGKA-SVTIEVEANGAKHKHTSTSDKRTAXKLASKEVLKSLK 1288
>gi|449442659|ref|XP_004139098.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Cucumis sativus]
Length = 1393
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 123/212 (58%), Gaps = 12/212 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +L Y FN+++LL EA T S PE Y+RLE++GDSVL+ +T + YP + P
Sbjct: 1150 ESLLKYTFNDRSLLLEAMTHGSYMLPEIPRCYQRLEFLGDSVLDYAITVHLYNKYPGMTP 1209
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN----- 183
LT +RSA+V+ + +R A+K LHK + H L + I S A+ ++ S+
Sbjct: 1210 ELLTDMRSASVSNDCYSRTALKAQLHKSILHCSHDLHKHI---SSAVQNFETLSSEATYG 1266
Query: 184 --GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
+ PKVL D++ES GA+++D +IV++ + LL+P++SPETLK HP EL E
Sbjct: 1267 WESEISFPKVLGDVIESLAGAIYVDSGYDKEIVFRSIRPLLEPLVSPETLKKHPRRELNE 1326
Query: 242 VCQKNKLKVKFVDLWKESTAFHIFIEDQLLGR 273
+CQK K+K + + ++ +E ++ GR
Sbjct: 1327 LCQKENYKLKKTVTSRVNGRSYVTVEVEVNGR 1358
>gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis]
Length = 1660
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F+ K LL+EA T S E+ + Y+RLE++GDSVL+LL+T + + ++ P
Sbjct: 1266 ESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLLITWHLYQNHTSMDP 1325
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI--LDYPLHSNGLV 186
G LT LRSA V+ E A+V ++ L+K+L+H LL QI+E+ E+ D + G
Sbjct: 1326 GELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLESFHESDEVAKATG-P 1384
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PK L D++ES GA+ ID ++D VW++F LL P+ +P+ L+ P+ EL ++C
Sbjct: 1385 KGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNLELPPLRELMQLC 1441
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 83 LLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTE 142
L+ EA T P E+ S ERLE +GDSVL ++ + F YP G L+ R+ V
Sbjct: 1069 LILEAITTPRSCEKV-SMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQRTRAVCNS 1127
Query: 143 KLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-----------ILDYPLHSNGLVDAPKV 191
L ++ I L Y+R + + + + L+ PL + + PKV
Sbjct: 1128 TLHQLGIGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEVPLDAKFQTEDPKV 1187
Query: 192 -----------------LADIVESTIGAVFI 205
++D VE+ IGA ++
Sbjct: 1188 QIAICCSKGHRWMCSKTISDCVEAVIGAYYV 1218
>gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group]
Length = 1576
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 114/204 (55%), Gaps = 11/204 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE++GY+F +K LL +AF PS + Y+RLE++GD+VL ++T + YP++ PG
Sbjct: 1137 EELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPG 1196
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD-- 187
+T LRS V + LA A++ +HK+L + L I +F Y SN D
Sbjct: 1197 QITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM----YVKLSNSEKDLL 1252
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PK L DIVES IGAV +D +++ VWKV LLKP+++ + T+P+ EL E+C
Sbjct: 1253 EEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELC 1312
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE 267
Q + ++ K +H+ +E
Sbjct: 1313 QCHGFELGLPKPMKADGEYHVKVE 1336
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
S P A+ + IL EA T C ER S ER E +GD+ L ++ + +F
Sbjct: 934 SFPEASQISASGIL-----------EALTTEKCLERI-SLERFEVLGDAFLKYVVGRHKF 981
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
Y L G LTR RS VN L ++I+ L Y+R
Sbjct: 982 ITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1019
>gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group]
Length = 1631
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 114/204 (55%), Gaps = 11/204 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE++GY+F +K LL +AF PS + Y+RLE++GD+VL ++T + YP++ PG
Sbjct: 1192 EELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPG 1251
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD-- 187
+T LRS V + LA A++ +HK+L + L I +F Y SN D
Sbjct: 1252 QITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM----YVKLSNSEKDLL 1307
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PK L DIVES IGAV +D +++ VWKV LLKP+++ + T+P+ EL E+C
Sbjct: 1308 EEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELC 1367
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE 267
Q + ++ K +H+ +E
Sbjct: 1368 QCHGFELGLPKPMKADGEYHVKVE 1391
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
S P A+ + IL EA T C ER S ER E +GD+ L ++ + +F
Sbjct: 989 SFPEASQISASGIL-----------EALTTEKCLERI-SLERFEVLGDAFLKYVVGRHKF 1036
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
Y L G LTR RS VN L ++I+ L Y+R
Sbjct: 1037 ITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1074
>gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
Length = 1385
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 11/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +L Y F++ +LL EA T S Y+RLE++GD+VL+ + T + YP P
Sbjct: 1136 ELMLDYNFSDPSLLLEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFTDYFYHQYPECTP 1195
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF---SEAILDYPLHS-NG 184
LT LRSA+VN A A+K GLHK++ H+ L +++ ++ E P H
Sbjct: 1196 ELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKFEQSFSGPSHGWEA 1255
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
+ PKVL D++ES GA++ID + +VW+ K LL+P+ +P+TL+ PV EL+E C
Sbjct: 1256 GICLPKVLGDVIESIAGAIYIDTKNDKKVVWRKMKRLLEPLATPDTLEIDPVKELHEFCD 1315
Query: 245 KNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPK----KEIAHNRAAKDALNNIE 296
+K+ + +E + +E Q G A + K A AAK L +++
Sbjct: 1316 PKTCSIKYT-VAREDRVTSVAVEVQTKGTTYKATRTGLTKRDAKKLAAKSVLKDMK 1370
>gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group]
gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group]
Length = 1604
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 114/204 (55%), Gaps = 11/204 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE++GY+F +K LL +AF PS + Y+RLE++GD+VL ++T + YP++ PG
Sbjct: 1165 EELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPG 1224
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD-- 187
+T LRS V + LA A++ +HK+L + L I +F Y SN D
Sbjct: 1225 QITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM----YVKLSNSEKDLL 1280
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PK L DIVES IGAV +D +++ VWKV LLKP+++ + T+P+ EL E+C
Sbjct: 1281 EEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELC 1340
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE 267
Q + ++ K +H+ +E
Sbjct: 1341 QCHGFELGLPKPMKADGEYHVKVE 1364
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
S P A+ + IL EA T C ER S ER E +GD+ L ++ + +F
Sbjct: 962 SFPEASQISASGIL-----------EALTTEKCLERI-SLERFEVLGDAFLKYVVGRHKF 1009
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
Y L G LTR RS VN L ++I+ L Y+R
Sbjct: 1010 ITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1047
>gi|251764670|sp|A7LFZ6.1|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName:
Full=Dicer-like protein 4; Short=OsDCL4; AltName:
Full=Protein SHOOT ORGANIZATION 1
gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group]
Length = 1657
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 114/204 (55%), Gaps = 11/204 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE++GY+F +K LL +AF PS + Y+RLE++GD+VL ++T + YP++ PG
Sbjct: 1218 EELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPG 1277
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD-- 187
+T LRS V + LA A++ +HK+L + L I +F Y SN D
Sbjct: 1278 QITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM----YVKLSNSEKDLL 1333
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PK L DIVES IGAV +D +++ VWKV LLKP+++ + T+P+ EL E+C
Sbjct: 1334 EEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELC 1393
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE 267
Q + ++ K +H+ +E
Sbjct: 1394 QCHGFELGLPKPMKADGEYHVKVE 1417
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
S P A+ + IL EA T C ER S ER E +GD+ L ++ + +F
Sbjct: 1015 SFPEASQISASGIL-----------EALTTEKCLERI-SLERFEVLGDAFLKYVVGRHKF 1062
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
Y L G LTR RS VN L ++I+ L Y+R
Sbjct: 1063 ITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1100
>gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
Length = 1686
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L Y+F N++LL EA T S P Y+RLE++GD VL+ L+++ F +P LPPG+
Sbjct: 1496 EHKLQYKFQNRSLLVEAITHASQPNCLLCYQRLEFLGDGVLDFLVSRHLFETHPGLPPGT 1555
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN-GLVDAP 189
LT LRSA VN + AR+ ++ GLH++L+H L+ +IR+F + + + P S + AP
Sbjct: 1556 LTDLRSAAVNNKWFARLVVRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASCFEDLSAP 1615
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKV 217
KVL D++ES GA+F+D N ++ +W+V
Sbjct: 1616 KVLGDLLESITGAIFVDTNFDLERLWRV 1643
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F SYE LE +GDS L ++T++ F +Y G L+ RS L
Sbjct: 1312 EAITSKKCHEEF-SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALY 1370
Query: 146 RVAIKLGLHKYLR-----------------------HNKPLLEEQIREFSEAILDYPLHS 182
++A G+ +Y+R H + E + FS +
Sbjct: 1371 QLAKSSGIAEYIRDEEFNPSNWTGPGMLTSDSSKCRHQQGSFENEENYFSSCASGH---- 1426
Query: 183 NGLVDAPKVLADIVESTIGA 202
G+ K LAD+VE+ IGA
Sbjct: 1427 RGI--RRKALADVVEALIGA 1444
>gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group]
gi|113564849|dbj|BAF15192.1| Os04g0509300, partial [Oryza sativa Japonica Group]
Length = 1090
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 114/204 (55%), Gaps = 11/204 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE++GY+F +K LL +AF PS + Y+RLE++GD+VL ++T + YP++ PG
Sbjct: 651 EELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPG 710
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD-- 187
+T LRS V + LA A++ +HK+L + L I +F Y SN D
Sbjct: 711 QITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM----YVKLSNSEKDLL 766
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PK L DIVES IGAV +D +++ VWKV LLKP+++ + T+P+ EL E+C
Sbjct: 767 EEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELC 826
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE 267
Q + ++ K +H+ +E
Sbjct: 827 QCHGFELGLPKPMKADGEYHVKVE 850
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
S P A+ + IL EA T C ER S ER E +GD+ L ++ + +F
Sbjct: 448 SFPEASQISASGIL-----------EALTTEKCLERI-SLERFEVLGDAFLKYVVGRHKF 495
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
Y L G LTR RS VN L ++I+ L Y+R
Sbjct: 496 ITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 533
>gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1058
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 114/204 (55%), Gaps = 11/204 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE++GY+F +K LL +AF PS + Y+RLE++GD+VL ++T + YP++ PG
Sbjct: 619 EELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPG 678
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD-- 187
+T LRS V + LA A++ +HK+L + L I +F Y SN D
Sbjct: 679 QITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM----YVKLSNSEKDLL 734
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PK L DIVES IGAV +D +++ VWKV LLKP+++ + T+P+ EL E+C
Sbjct: 735 EEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELC 794
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE 267
Q + ++ K +H+ +E
Sbjct: 795 QCHGFELGLPKPMKADGEYHVKVE 818
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
S P A+ + IL EA T C ER S ER E +GD+ L ++ + +F
Sbjct: 416 SFPEASQISASGIL-----------EALTTEKCLERI-SLERFEVLGDAFLKYVVGRHKF 463
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
Y L G LTR RS VN L ++I+ L Y+R
Sbjct: 464 ITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 501
>gi|145358264|ref|NP_197532.3| dicer-like protein 4 [Arabidopsis thaliana]
gi|322510021|sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4
gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana]
gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana]
Length = 1702
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 108/190 (56%), Gaps = 4/190 (2%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQ 119
L NNL+ E L Y+F +K LL +AF PS Y+RLE++GD+VL+ L+T
Sbjct: 1286 LTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYF 1345
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F ++P L PG LT LRS +VN E LA VA+ L ++L L E I +++ + P
Sbjct: 1346 FTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSP 1405
Query: 180 LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVT 237
L S PKVL D+VES +GA+F+DC +++ VW + L P+ + L+ P+
Sbjct: 1406 LASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIK 1465
Query: 238 ELYEVCQKNK 247
EL E+CQ K
Sbjct: 1466 ELIELCQSYK 1475
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
E+ G+R + EA T C ER S ERLE +GD+ L +++ F + +L G L
Sbjct: 1097 EVSGHR------VLEALTTEKCHERL-SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGEL 1149
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS-------EAILDYPLHS-- 182
TR RS VN L R+AIK L Y+R ++ L Q F + + +HS
Sbjct: 1150 TRRRSNVVNNSNLCRLAIKKNLQVYIR-DQALDPTQFFAFGHPCRVTCDEVASKEVHSLN 1208
Query: 183 --NGLVDA---------------PKVLADIVESTIGAVFID 206
G++++ K +AD+VE+ +GA +D
Sbjct: 1209 RDLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFLVD 1249
>gi|15242329|ref|NP_199328.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
gi|75171238|sp|Q9FKF0.1|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName:
Full=Ribonuclease III-like protein 3; Short=RNase
III-like protein 3; AltName: Full=Ribonuclease
three-like protein 3
gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana]
gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
Length = 957
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NK LL+EA T S ++RLE+ GDS+L + T YPNL
Sbjct: 8 EKILNYSFVNKTLLKEAITQKSP-----LFDRLEFFGDSILEVAFTNYICHTYPNLKVKE 62
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--DYPLHSNGLVDA 188
L LR+ANV+ EK AR+A+ LH +L P L ++++ F+EA+ D P+ GLV A
Sbjct: 63 LRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYGGLVKA 122
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP 235
PK+LAD +ES VFID N + +W++F+ LL+P+ +P+ L P
Sbjct: 123 PKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQP 169
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 16/237 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NK LL+E T + P ++ L +VG+S L+L TK + YP L P
Sbjct: 419 EKILNYSFVNKTLLKELLTHNNSP----LFQGLMFVGESALSLAFTKHLYLTYPMLEPKD 474
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--DYPLHSNGLVDA 188
L+ LR AN +K A VA+K G+++ + P E+ +F E + D P +V A
Sbjct: 475 LSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDDPYR---VVKA 531
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT---HPVTELYEVCQK 245
PK+L +++ GAV+ID ++ + ++F+ LL+P+ + + L+ P L+ + K
Sbjct: 532 PKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQPFLMLFRLADK 591
Query: 246 NKLKVKF---VDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+ ++ F D ++++D + G A + + A AA++A+ + +
Sbjct: 592 HGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGC-AKRIDTAKLLAAEEAIQKLSECM 647
>gi|334187796|ref|NP_001190348.1| dicer-like protein 4 [Arabidopsis thaliana]
gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana]
Length = 1688
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 108/190 (56%), Gaps = 4/190 (2%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQ 119
L NNL+ E L Y+F +K LL +AF PS Y+RLE++GD+VL+ L+T
Sbjct: 1272 LTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYF 1331
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F ++P L PG LT LRS +VN E LA VA+ L ++L L E I +++ + P
Sbjct: 1332 FTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSP 1391
Query: 180 LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVT 237
L S PKVL D+VES +GA+F+DC +++ VW + L P+ + L+ P+
Sbjct: 1392 LASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIK 1451
Query: 238 ELYEVCQKNK 247
EL E+CQ K
Sbjct: 1452 ELIELCQSYK 1461
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
E+ G+R + EA T C ER S ERLE +GD+ L +++ F + +L G L
Sbjct: 1083 EVSGHR------VLEALTTEKCHERL-SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGEL 1135
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS-------EAILDYPLHS-- 182
TR RS VN L R+AIK L Y+R ++ L Q F + + +HS
Sbjct: 1136 TRRRSNVVNNSNLCRLAIKKNLQVYIR-DQALDPTQFFAFGHPCRVTCDEVASKEVHSLN 1194
Query: 183 --NGLVDA---------------PKVLADIVESTIGAVFID 206
G++++ K +AD+VE+ +GA +D
Sbjct: 1195 RDLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFLVD 1235
>gi|212723814|ref|NP_001131630.1| uncharacterized protein LOC100192986 [Zea mays]
gi|194692090|gb|ACF80129.1| unknown [Zea mays]
Length = 365
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 111/202 (54%), Gaps = 8/202 (3%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E N +L E +L Y FN+ +LL EA T S Y+RLE++GD+VL+ +
Sbjct: 105 KAEEFINVKSL--ELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIF 162
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF---S 172
T + YP P LT LRSA+VN A A+K GLHK++ H+ L +++ ++
Sbjct: 163 TDYFYHQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKF 222
Query: 173 EAILDYPLHS-NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
E P H + PKVL D+VES GA++ID +VW+ K +L+P+++P+TL
Sbjct: 223 EQSFSGPSHGWEAGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTL 282
Query: 232 KTHPVTELYEVCQKNKLKVKFV 253
+ PV EL E C +++
Sbjct: 283 QNDPVKELQEFCDSKGYTLEYT 304
>gi|397529815|gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum]
Length = 1620
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 8/199 (4%)
Query: 62 LPNANNLDE---EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
+P A+ +D E +LGY F +K LL +AF PS Y+RLE++GD+VL+ L+T
Sbjct: 1184 MPLADEIDVLGIERLLGYSFIHKGLLIQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLITS 1243
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD 177
+ +YP L PG LT LRS +VN A VA++ H ++ + L E I + I
Sbjct: 1244 YLYSVYPKLKPGQLTDLRSISVNNNTFAVVAVRQSFHSHILCDSSDLRESITRYVNFI-G 1302
Query: 178 YPLHSNGLVDA---PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH 234
P + G V + PK L D+VES +GA+ +D ++ W++ LKP++S L+ +
Sbjct: 1303 RPDSTRGWVKSHLVPKALGDLVESCMGAILLDTGFDLNRAWQIILSFLKPVMSFTRLQLN 1362
Query: 235 PVTELYEVCQKNKLKVKFV 253
P ELYE+CQ +KF+
Sbjct: 1363 PTRELYELCQSFGWNLKFL 1381
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T +C E F S ERLE +GD+ L + + F L+ G LTR RS VN L
Sbjct: 1007 EALTTENCHESF-SLERLEVLGDAFLKFAVGRHLFLLHDAFDEGQLTRKRSNAVNNSNLY 1065
Query: 146 RVAIKLGLHKYLR 158
VAIK L Y+R
Sbjct: 1066 MVAIKKNLQAYIR 1078
>gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group]
Length = 1318
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 71 EEILGYRFNNKNLLEEAFT----DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +LGY+FN+ LL EA T S P Y+RLE++GD++L+ L T+ + YP+
Sbjct: 1073 EGMLGYKFNDSLLLLEALTHGSYQTSGPTS--CYQRLEFLGDAILDHLFTEYYYSKYPDC 1130
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI----REFSEAILDYPLHS 182
P LT LRSA+VN A A+K GL+K++ H+ L ++ EF ++
Sbjct: 1131 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 1190
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+ PKVL D++ES GA+++D ++VW+ K LL+P+ +PET++ PV L E
Sbjct: 1191 EAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEF 1250
Query: 243 CQKNKLKVKF 252
C + K+ +
Sbjct: 1251 CDRRSFKITY 1260
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S E LE +GDS L + T+ F Y G LT+++ ++ L
Sbjct: 900 EALTTKKCQEEF-SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALC 958
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP---------LHSNGLVDAPKV----- 191
++A L Y+ E R++ LDY L NG+ K+
Sbjct: 959 QLACSSNLVGYIHAE----EFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSK 1014
Query: 192 -LADIVESTIGA 202
+AD VE+ IGA
Sbjct: 1015 RIADSVEALIGA 1026
>gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group]
gi|122246906|sp|Q10HL3.1|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName:
Full=Dicer-like protein 2a; Short=OsDCL2a
gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
sativa Japonica Group]
gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed
[Oryza sativa Japonica Group]
gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group]
gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1410
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 71 EEILGYRFNNKNLLEEAFT----DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +LGY+FN+ LL EA T S P Y+RLE++GD++L+ L T+ + YP+
Sbjct: 1165 EGMLGYKFNDSLLLLEALTHGSYQTSGPTS--CYQRLEFLGDAILDHLFTEYYYSKYPDC 1222
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI----REFSEAILDYPLHS 182
P LT LRSA+VN A A+K GL+K++ H+ L ++ EF ++
Sbjct: 1223 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 1282
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+ PKVL D++ES GA+++D ++VW+ K LL+P+ +PET++ PV L E
Sbjct: 1283 EAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEF 1342
Query: 243 CQKNKLKVKF 252
C + K+ +
Sbjct: 1343 CDRRSFKITY 1352
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S E LE +GDS L + T+ F Y G LT+++ ++ L
Sbjct: 992 EALTTKKCQEEF-SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALC 1050
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP---------LHSNGLVDAPKV----- 191
++A L Y+ E R++ LDY L NG+ K+
Sbjct: 1051 QLACSSNLVGYIHAE----EFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSK 1106
Query: 192 -LADIVESTIGA 202
+AD VE+ IGA
Sbjct: 1107 RIADSVEALIGA 1118
>gi|294463153|gb|ADE77113.1| unknown [Picea sitchensis]
Length = 173
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 97/152 (63%), Gaps = 3/152 (1%)
Query: 58 ESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLT 116
+S S+ ++L E E+IL Y+F +K+LL+EA T S SYE+LE+VGDSVL L+T
Sbjct: 9 QSLSVDTEDSLSELEDILKYKFKSKSLLKEAITHSS-NNNTESYEKLEFVGDSVLGYLVT 67
Query: 117 KEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL 176
K + YP L G+LT LRS NV+TEK ARV +K H+YL N P L++ I +F + I
Sbjct: 68 KHLYCAYPKLYQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNAPALQQIIEDFVKDIE 127
Query: 177 D-YPLHSNGLVDAPKVLADIVESTIGAVFIDC 207
D G PKVLADIVES GAVF+DC
Sbjct: 128 DESKSFRCGDFKPPKVLADIVESIAGAVFVDC 159
>gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing)
[Oryza sativa Japonica Group]
Length = 1017
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 71 EEILGYRFNNKNLLEEAFT----DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +LGY+FN+ LL EA T S P Y+RLE++GD++L+ L T+ + YP+
Sbjct: 772 EGMLGYKFNDSLLLLEALTHGSYQTSGPTS--CYQRLEFLGDAILDHLFTEYYYSKYPDC 829
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIR----EFSEAILDYPLHS 182
P LT LRSA+VN A A+K GL+K++ H+ L ++ EF ++
Sbjct: 830 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 889
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+ PKVL D++ES GA+++D ++VW+ K LL+P+ +PET++ PV L E
Sbjct: 890 EAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEF 949
Query: 243 CQKNKLKVKF 252
C + K+ +
Sbjct: 950 CDRRSFKITY 959
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S E LE +GDS L + T+ F Y G LT+++ ++ L
Sbjct: 599 EALTTKKCQEEF-SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALC 657
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP---------LHSNGLVDAPKV----- 191
++A L Y+ E R++ LDY L NG+ K+
Sbjct: 658 QLACSSNLVGYIHAE----EFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSK 713
Query: 192 -LADIVESTIGA 202
+AD VE+ IGA
Sbjct: 714 RIADSVEALIGA 725
>gi|413933739|gb|AFW68290.1| hypothetical protein ZEAMMB73_539070 [Zea mays]
Length = 707
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 111/202 (54%), Gaps = 8/202 (3%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E N +L E +L Y FN+ +LL EA T S Y+RLE++GD+VL+ +
Sbjct: 447 KAEEFINVKSL--ELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIF 504
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF---S 172
T + YP P LT LRSA+VN A A+K GLHK++ H+ L +++ ++
Sbjct: 505 TDYFYHQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKF 564
Query: 173 EAILDYPLHS-NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
E P H + PKVL D+VES GA++ID +VW+ K +L+P+++P+TL
Sbjct: 565 EQSFSGPSHGWEAGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTL 624
Query: 232 KTHPVTELYEVCQKNKLKVKFV 253
+ PV EL E C +++
Sbjct: 625 QNDPVKELQEFCDSKGYTLEYT 646
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T +C E F S E LE +GDS L + T+ F Y + G LT+++ ++ L
Sbjct: 300 EALTTKNCQEEF-SQESLETLGDSFLKYITTQHFFVKYKHQHEGMLTKMKKNVISNAALC 358
Query: 146 RVAIKLGLHKYLR 158
++A L Y+R
Sbjct: 359 QLACSNNLVGYIR 371
>gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group]
gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group]
Length = 1375
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 7/187 (3%)
Query: 71 EEILGYRFNNKNLLEEAFT----DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +LGY+FN+ LL EA T S P Y+RLE++GD++L+ L T+ + YP+
Sbjct: 1134 EGMLGYKFNDSLLLLEALTHGSYQTSGPTS--CYQRLEFLGDAILDHLFTEYYYSKYPDC 1191
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS-NGL 185
P LT LRSA+VN A A+K GL+K++ H+ L ++ + P +
Sbjct: 1192 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1251
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ PKVL D++ES GA+++D ++VW+ K LL+P+ +PET++ PV L E C +
Sbjct: 1252 IGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDR 1311
Query: 246 NKLKVKF 252
K+ +
Sbjct: 1312 RSFKITY 1318
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S E LE +GDS L + T+ F Y G LT+++ ++ L
Sbjct: 961 EALTTKKCQEEF-SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALC 1019
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP---------LHSNGLVDAPKV----- 191
++A L Y+ E R++ LDY L NG+ K+
Sbjct: 1020 QLACSSNLVGYIHAE----EFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSK 1075
Query: 192 -LADIVESTIGA 202
+AD VE+ IGA
Sbjct: 1076 RIADSVEALIGA 1087
>gi|251764794|sp|Q69LX2.2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName:
Full=Dicer-like protein 2b; Short=OsDCL2b
Length = 1377
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 7/187 (3%)
Query: 71 EEILGYRFNNKNLLEEAFT----DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +LGY+FN+ LL EA T S P Y+RLE++GD++L+ L T+ + YP+
Sbjct: 1136 EGMLGYKFNDSLLLLEALTHGSYQTSGPTS--CYQRLEFLGDAILDHLFTEYYYSKYPDC 1193
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS-NGL 185
P LT LRSA+VN A A+K GL+K++ H+ L ++ + P +
Sbjct: 1194 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1253
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ PKVL D++ES GA+++D ++VW+ K LL+P+ +PET++ PV L E C +
Sbjct: 1254 IGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDR 1313
Query: 246 NKLKVKF 252
K+ +
Sbjct: 1314 RSFKITY 1320
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S E LE +GDS L + T+ F Y G LT+++ ++ L
Sbjct: 963 EALTTKKCQEEF-SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALC 1021
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP---------LHSNGLVDAPKV----- 191
++A L Y+ E R++ LDY L NG+ K+
Sbjct: 1022 QLACSSNLVGYIHAE----EFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSK 1077
Query: 192 -LADIVESTIGA 202
+AD VE+ IGA
Sbjct: 1078 RIADSVEALIGA 1089
>gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group]
Length = 1371
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 7/187 (3%)
Query: 71 EEILGYRFNNKNLLEEAFT----DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +LGY+FN+ LL EA T S P Y+RLE++GD++L+ L T+ + YP+
Sbjct: 1130 EGMLGYKFNDSLLLLEALTHGSYQTSGPTS--CYQRLEFLGDAILDHLFTEYYYSKYPDC 1187
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS-NGL 185
P LT LRSA+VN A A+K GL+K++ H+ L ++ + P +
Sbjct: 1188 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1247
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ PKVL D++ES GA+++D ++VW+ K LL+P+ +PET++ PV L E C +
Sbjct: 1248 IGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDR 1307
Query: 246 NKLKVKF 252
K+ +
Sbjct: 1308 RSFKITY 1314
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S E LE +GDS L + T+ F Y G LT+++ ++ L
Sbjct: 957 EALTTKKCQEEF-SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALC 1015
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP---------LHSNGLVDAPKV----- 191
++A L Y+ E R++ LDY L NG+ K+
Sbjct: 1016 QLACSSNLVGYIHAE----EFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSK 1071
Query: 192 -LADIVESTIGA 202
+AD VE+ IGA
Sbjct: 1072 RIADSVEALIGA 1083
>gi|425626948|gb|AFX89032.1| dicer 1 [Mayetiola destructor]
Length = 2057
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 129/256 (50%), Gaps = 26/256 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GY FN+++ L +A T S + + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1803 EEHIGYHFNDRSYLLQAMTHASYSQNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1862
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-------------- 174
G+LT LRSA VN A +A++ G HKY RH P L + I F
Sbjct: 1863 GALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPSLNDVIDRFVRIQVENNHSISEEFYL 1922
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLK 232
I + V+ PK L DI ES GA+F+D N S+D+VWK+F ++KP I +++
Sbjct: 1923 ISEEECDEAEDVEVPKALGDIFESVAGAIFLDSNMSLDMVWKIFSNMMKPEIDQFSDSVP 1982
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
P+ EL E+ KF K + + + + G+G Y IA AAK
Sbjct: 1983 KSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVDVFGKGTYRGIGRNYRIAKCTAAK 2039
Query: 290 DALNNIER--LLNEKR 303
AL +++ L+N KR
Sbjct: 2040 CALRQLKKQGLINRKR 2055
>gi|297836192|ref|XP_002885978.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297331818|gb|EFH62237.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 20/185 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E+IL Y F +KNLL+EA T S S +ERLE++GDSVL ++ + YPNL
Sbjct: 8 EKILNYTFTDKNLLKEAITKTSGSNTESSSLLFERLEFLGDSVLLVVFSNHIEITYPNLH 67
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN--KPLLEE-------------QIREFS 172
P L +R ANV+ E ARVA+ LH+++ + PLL + +I++FS
Sbjct: 68 PNDLNDVRIANVSNETFARVAVNNNLHQFIIFDAPNPLLHKMSHVLTNKWCHVLKIKDFS 127
Query: 173 EAILD--YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
EA+ + YP GLV APK LAD+VE+ GAV+ID + + VW++F+ L++P+ + +
Sbjct: 128 EAVKEEVYPAPCGGLVKAPKFLADLVEAIAGAVYIDVDFDVQRVWEIFRVLVEPICTLDD 187
Query: 231 LKTHP 235
L+ P
Sbjct: 188 LRKQP 192
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 147/284 (51%), Gaps = 36/284 (12%)
Query: 38 ALISHLLQDLFVNEKAGDE---SESESLPNANNLDE-------------EEILGYRFNNK 81
+L+SH+ +L + EK+ DE S LP+ +L+ E+IL Y F NK
Sbjct: 329 SLMSHVKSNLPI-EKSLDEKISSNESCLPHERSLESLSSEIDSDPVKAVEKILNYSFTNK 387
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
NLL EA T S ++RL +VG + ++L + YP L P LT L++AN
Sbjct: 388 NLLREALTHNS--SNLLPFQRLMFVGKAGISLAFANHMYLTYPKLGPKELTMLQNANTCN 445
Query: 142 EKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY----PLHSNGLVDAPKVLADIVE 197
++ ARVA+K G++++L+ N + QI EF + + P S V APK+L D+VE
Sbjct: 446 DRYARVAVKRGIYQFLKCNVRTSKRQIIEFIKMLGKEDDPDPFRS---VKAPKILTDLVE 502
Query: 198 STIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYEVCQKNKLKVKF--- 252
S GAV+ID N + +W++ + L +P+ + + + K HP+ L+ + K+ +++F
Sbjct: 503 SVAGAVYIDVNRDVKRLWEILRGLFEPIYTLDDIRRKPHPLLTLFCLGYKHGKRIEFRYR 562
Query: 253 ----VDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
E+T ++++D+ + G + + + RAA AL
Sbjct: 563 ECEKSSGMNEATITEVYVDDKFIACGK-SCNRAASKMRAATMAL 605
>gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1693
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 106/190 (55%), Gaps = 4/190 (2%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQ 119
L NNL+ E L Y F +K LL +AF PS Y+RLE++GD+VL+ L+T
Sbjct: 1278 LTTRNNLEALENQLDYNFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYF 1337
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F ++P L PG LT LRS +VN + LA VA+ L ++L L E I +++ P
Sbjct: 1338 FTVFPKLKPGQLTDLRSLSVNNKALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASP 1397
Query: 180 LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVT 237
L S PKVL D+VES +GA+F+DC +++ VW + L P+ + L+ P+
Sbjct: 1398 LASGPSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIK 1457
Query: 238 ELYEVCQKNK 247
EL E+CQ K
Sbjct: 1458 ELIELCQSYK 1467
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 33/160 (20%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
E+ G+R + EA T C ER S ERLE +GD+ L +++ F + L G L
Sbjct: 1090 EVSGHR------VLEALTTEKCHERL-SLERLEVLGDAFLKFAVSRHLFLHHDRLDEGEL 1142
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS-------EAILDYPLHS-- 182
TR RS VN L R+AIK L Y+R ++ L Q F + + +HS
Sbjct: 1143 TRRRSKAVNNSNLCRLAIKRNLQVYIR-DQALDPTQFFAFGHPCRVTCDEVTSEEVHSLN 1201
Query: 183 --NGLVDA--------------PKVLADIVESTIGAVFID 206
GL+++ K +AD+VE+ +GA +D
Sbjct: 1202 RVPGLLESNSEIRCSKGHHWLYKKTIADVVEALVGAFLVD 1241
>gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 792
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 10/192 (5%)
Query: 71 EEILGYRFNNKNLL--------EEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFL 122
E+ +GY+F K+LL E FT P F ++RLE++GDSVL+ L+ + L
Sbjct: 544 EKKIGYQFKCKSLLLSAFDYGDEVTFTQSGVPRGSFQFQRLEFLGDSVLDFLIMRHFVQL 603
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
Y P L LR A VN+E A AI+ G H YL+ P+L ++I ++ ++
Sbjct: 604 YSAFNPEQLNDLRQATVNSENFACTAIRHGFHHYLKRMSPILRDEIELYAASVHREGGSP 663
Query: 183 NGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELY 240
G+ +PK + D++++ G++ +D N D+VWKV K LL P+ +P+T+ HP L
Sbjct: 664 FGIPSRASPKAIGDLMQTLAGSILLDSNFDHDLVWKVLKPLLSPLATPKTVMRHPRRLLE 723
Query: 241 EVCQKNKLKVKF 252
+C K LK++
Sbjct: 724 ALCHKQDLKLEL 735
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 84 LEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEK 143
++EA T +C E SYE LE +GDSVLN + + +P+ L R V+
Sbjct: 373 VQEALTSGAC-EGNHSYETLELLGDSVLNFIGGVHMYIDFPSCTSELLHSYRHDLVSNRN 431
Query: 144 LARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS-NGLVDAPKVLADIVESTIGA 202
L + + GL Y+ + L + A+ D P S +G V K LAD+VE+ IG
Sbjct: 432 LYKCGLACGLPGYI-FAELLNTKTWVPPGPALEDLPQKSPDGQVIGLKTLADVVEALIGV 490
Query: 203 VFI--DCNSSI-DIVWKVFKELLKPMISPETLKTHPVTELYEVCQ-KNKLK 249
F+ D NS++ +VW L P+ PE + + ++ E+ + +N K
Sbjct: 491 TFLHGDLNSAVKTMVW-----LQVPIPFPEKIPEVIIADIQELMEARNTFK 536
>gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
Length = 2270
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 130/256 (50%), Gaps = 26/256 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGYRF +++ L +A T S CP R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2018 EDSLGYRFQDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2077
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD--------YPL 180
G+LT LRSA VN A +A++ HKY RH P L + I F D Y L
Sbjct: 2078 GALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHSISEEYYL 2137
Query: 181 HSNGLVD------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLK 232
S D PK L D+ ES GA+F+D N S+D VW+V++ ++ P I ++
Sbjct: 2138 ISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWRVYRGMMGPEIEQFSNSVP 2197
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
P+ EL E+ KF K + + + ++ G+G + IA AAK
Sbjct: 2198 KSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAAK 2254
Query: 290 DALNNIER--LLNEKR 303
AL +++ L+N++R
Sbjct: 2255 CALRQLKKMGLINKRR 2270
>gi|391345092|ref|XP_003746827.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
Length = 1446
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 99/176 (56%), Gaps = 11/176 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E ILGYRF N+ L EA T S R SYERLE++GD+V++ L++ F P+L PG
Sbjct: 1186 ESILGYRFKNRLYLLEAITHQSYNNRVTHSYERLEFLGDAVIDYLVSCFIFTNDPHLGPG 1245
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-LDYPLHS------ 182
LT +RSA V + A++ K GL + L H PLL + ++EA+ + P S
Sbjct: 1246 QLTSVRSALVCNNQFAQIVTKAGLSRCLLHRSPLLFRMMTSYTEAVEIGRPCDSFIGDDE 1305
Query: 183 ---NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP 235
LVDAPK D++ES IGAVFID N W VF+ L+ + ETLK +P
Sbjct: 1306 TEDADLVDAPKPFGDLMESLIGAVFIDSNQDFSRTWDVFRGLMGDRVLLETLKDNP 1361
>gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti]
gi|108883036|gb|EAT47261.1| AAEL001612-PA [Aedes aegypti]
Length = 2193
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 130/256 (50%), Gaps = 26/256 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY+F +++ L +A T S CP R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1941 EDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2000
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD--------YPL 180
G+LT LRSA VN A +A++ HKY RH P L + I F D Y L
Sbjct: 2001 GALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISEEYYL 2060
Query: 181 HSNGLVD------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLK 232
S D PK L D+ ES GA+F+D N S+D VWKV++ ++ P I ++
Sbjct: 2061 ISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFSNSVP 2120
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
P+ EL E+ KF K + + + ++ G+G + IA AAK
Sbjct: 2121 KSPIRELLEL---EPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAAK 2177
Query: 290 DALNNIER--LLNEKR 303
AL +++ L+N++R
Sbjct: 2178 CALRQLKKMGLINKRR 2193
>gi|356546104|ref|XP_003541471.1| PREDICTED: dicer-like protein 4-like [Glycine max]
Length = 1636
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 128/237 (54%), Gaps = 15/237 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E LG+ F +K LL +AF PS + Y+RLE++GD+VL+ L+T F YP L PG
Sbjct: 1212 EGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKPG 1271
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY---PLHSNGLV 186
LT LRS +VN + A +A+ +L + L E I+++ +DY P+ NG+
Sbjct: 1272 QLTDLRSLSVNNKAFACLAVDRSFDNFLLCDSSGLSEAIKKY----VDYVRRPVSDNGIK 1327
Query: 187 DAPKV---LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-PETLKTHPVTELYEV 242
+ PK L D+VES +GA+ +D +++ VWK+ L P++ +L+ PV +L E+
Sbjct: 1328 EGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLREL 1387
Query: 243 CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
CQ + L+++F+ + + T +E ++ G G N+ K+A +LL
Sbjct: 1388 CQSHNLELEFLPVPSKLTK-RFSVEAKVSGNGVCETASATGQNK--KEACRIASQLL 1441
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 25/145 (17%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C ERF S ERLE +GD+ L + + F ++ +L G LT+ RS VN L
Sbjct: 1022 EALTTEKCQERF-SLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLF 1080
Query: 146 RVAIKLGLHKYLRH-----------NKPLLEEQIREFSEAI---LDYPLHSNGLVDA--- 188
++AIK L Y+ +P E E+I L+ + +
Sbjct: 1081 KLAIKRNLQVYICDQTFDPTQFYALGRPCPRVCSNETEESIHFCLNSVMQQGKATETRCS 1140
Query: 189 -------PKVLADIVESTIGAVFID 206
K +AD+VE+ +GA +D
Sbjct: 1141 KNHHWLHRKTIADVVEALVGAFLVD 1165
>gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides]
Length = 1529
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 109/189 (57%), Gaps = 16/189 (8%)
Query: 73 ILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
ILGY F N+ L+ EA T S Y+RLE++GD+VL+ +T F Y PPG+L
Sbjct: 1257 ILGYEFQNEALIAEALTHASVTNSSVPCYQRLEFLGDAVLDFCVTNYLFEKYHTAPPGTL 1316
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL-------DYPLHSNG 184
LR ++VN + L+ + I+LGLH ++RH +++F E ++ +Y L+ N
Sbjct: 1317 HDLRKSSVNNDILSVLCIQLGLHVHIRHFSTTFPSAVKQFQELVVASQDEKGEYWLNFN- 1375
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETLKTHPVTELY 240
PKVL+D+VES IGAVF+D ++D V +F LLKP+ IS E ++ HP+ +L
Sbjct: 1376 ---PPKVLSDVVESLIGAVFVDAGFNLDPVLGLFDRLLKPLLDDHISIEAMQQHPLGKLK 1432
Query: 241 EVCQKNKLK 249
+ Q+ K
Sbjct: 1433 CMVQEFGCK 1441
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 21/151 (13%)
Query: 69 DEEEILGYRFNNKN-LLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
D ++ LG K+ + EAFT S E+ Y+RLE++GDSVL + + F P
Sbjct: 1048 DAKKALGLSGRMKDPYMLEAFTASSAGLEK--DYQRLEFLGDSVLKFITSTYVFVTLPIS 1105
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYL-------RHNKP---LLEEQIREFSEAIL 176
LT R ++ L + AI+L L++Y+ R +P L ++ E +++
Sbjct: 1106 NEFELTESRMRMISNTALFKSAIQLRLYEYICSQNLPRRFYRPPNYLCKDDSAEMIKSLT 1165
Query: 177 DYPLHSNGLVDAPKVLADIVESTIGAVFIDC 207
+ L + K LAD+VEST+GA ++ C
Sbjct: 1166 YHKL-------SDKTLADVVESTLGASYLSC 1189
>gi|379987682|gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata]
Length = 1622
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 111/205 (54%), Gaps = 8/205 (3%)
Query: 62 LPNANNLDEEEI---LGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
+P A+ +D + I LGY F +K LL +AF PS Y+RLE++GD+VL+ L+T
Sbjct: 1187 MPLADEIDIQAIENLLGYTFVHKGLLIQAFIHPSYNNHGGGCYQRLEFLGDAVLDYLITS 1246
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD 177
+ +YP L PG LT LRS +VN A VA+ H ++ + L E I + I
Sbjct: 1247 YLYSVYPKLKPGQLTDLRSVSVNNTTFAVVAVHQSFHSHILCDSSGLRESITRYVNFI-G 1305
Query: 178 YPLHSNGLVD---APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH 234
P L + PK L D+VES +GA+ +D ++ W++ LKP++S L+ +
Sbjct: 1306 RPDSMKRLSEEPSCPKALGDLVESCMGAILLDTGFDLNXAWRIMLSFLKPVMSFTRLQLN 1365
Query: 235 PVTELYEVCQKNKLKVKFVDLWKES 259
P EL+E+CQ +KF+ K+S
Sbjct: 1366 PKRELHELCQSYGWHLKFLASKKDS 1390
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 24/144 (16%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S ERLE +GD+ L + + F Y G LTR RS VN L
Sbjct: 1010 EALTTEKCNEPF-SLERLEVLGDAFLKFAVGRHVFLTYNAFDEGQLTRRRSNIVNNSYLY 1068
Query: 146 RVAIKLGLHKYLRHNK-------------PLL-----EEQIREFSEAILDYPLHSNGLVD 187
+A++ L ++R P++ E+ I ++ D
Sbjct: 1069 TIAVRNNLQAFIRDQSFDPYHFYAVGRPCPVICNKQTEKSIHGQCGSVTDGAKTEVRCSK 1128
Query: 188 A-----PKVLADIVESTIGAVFID 206
K +ADIVE+ +GA +D
Sbjct: 1129 CHQWLRKKTIADIVEALVGAFVVD 1152
>gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis]
Length = 1633
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 9/218 (4%)
Query: 62 LPNANNLDE---EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
+P A ++D E+ L ++F N+ L+ +AF PS + Y+RLE++GD+VL+ L+T
Sbjct: 1199 MPLAPSIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITS 1258
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD 177
F +YP L PG LT LRSA VN A VA+ +++L + L E I + +
Sbjct: 1259 YLFSVYPKLKPGLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKR 1318
Query: 178 YPLHSNGL--VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP 235
+ + L PKVL D+VES IGA+F+D ++ +WK+ L P+++ + +P
Sbjct: 1319 PAVEKDSLEGPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNP 1378
Query: 236 VTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGR 273
EL+E C+ +K K++F L ++ + +E ++ G+
Sbjct: 1379 FRELHEFCESHKWKLQFPTLKRD---MNFLVEAKVTGK 1413
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 40/193 (20%)
Query: 40 ISHLLQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS 99
I H L++L V E +SL +A+ + E+ YR + EA T C ER S
Sbjct: 986 IMHRLENLLV------AIELKSLLSASFSEGAEVTAYR------ILEALTTERCQERL-S 1032
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
ERLE +GD+ L + + F L+ L G LTR RS VN L ++A + L Y+R
Sbjct: 1033 LERLEILGDAFLKFAVGRHLFLLHDTLDEGELTRKRSNAVNNSNLLKLASRRNLQVYIR- 1091
Query: 160 NKPLLEEQIREFSEAI-------LDYPLHSNGLVDA-------------------PKVLA 193
++P Q + +HS+ +A K +A
Sbjct: 1092 DQPFDPRQFFALGHPCPVICTKESEGSIHSSNRSNAKGQENTIEVRCSRGHHWLYKKTIA 1151
Query: 194 DIVESTIGAVFID 206
D+VE+ +GA +D
Sbjct: 1152 DVVEALVGAFIVD 1164
>gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum]
Length = 1626
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 24/247 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTD----PSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E+ LGY F +++ L +A T P+C Y+RLE++GD+VL+ L+T+ +
Sbjct: 1378 EQHLGYYFQDRSYLLQAMTHASYYPNCLTD--CYQRLEFLGDAVLDYLITRHLYEDKRRH 1435
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF------SEAILDYPL 180
PPG+LT LRSA VN A +A+K G HKYL+H P L E + F + +D
Sbjct: 1436 PPGALTDLRSALVNNTIFASLAVKNGFHKYLKHLSPGLSEVVYRFVAIQEENGHTIDEEF 1495
Query: 181 HSNGL--------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK 232
+G V+APKVL DI ES GA+++D N S+D VWKV+ ++++ I + K
Sbjct: 1496 CFSGEDDFEDAEDVEAPKVLGDIFESVAGAIYLDSNMSLDAVWKVYHKIMENEIK-QFSK 1554
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
P++ + E+ + KF K + + ++LG+G + IA AAK
Sbjct: 1555 NVPISPVRELLELEPNTAKFSKPEKLVDGRRVRVIVEILGKGVFKGIGRNYRIAKCTAAK 1614
Query: 290 DALNNIE 296
ALN+++
Sbjct: 1615 CALNHLK 1621
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVA-IKLGLHKY 156
+ ERLE +GDS L +T + + N+ G L+ LRS +V+ L R+ +K+ +
Sbjct: 1204 YDLERLETIGDSFLKYAVTAYLYCTHNNVHEGILSDLRSNHVSNLNLYRLGKLKMFGERM 1263
Query: 157 L------RHNK-PLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNS 209
+ R N P + +A+++ + + K +AD VE+ IGA I C +
Sbjct: 1264 ISTKFEPRSNWLPPCYIGPHKLEKAVINSNISITQHITNDKSIADCVEALIGAYLISCGT 1323
>gi|357115872|ref|XP_003559709.1| PREDICTED: endoribonuclease Dicer homolog 2a-like [Brachypodium
distachyon]
Length = 1402
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 11/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ILGY F + LL EA T S Y+RLE++GD+VL+ L+T + YP P
Sbjct: 1148 EIILGYNFKDPLLLIEALTHGSYQIAGPTACYQRLEFLGDAVLDHLVTVYYYNTYPECTP 1207
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ----IREFSEAILDYPLHS-N 183
LT LRSA+VN A ++K GL+K++ H+ L + + F +A P H
Sbjct: 1208 ALLTDLRSASVNNNCYAHASVKAGLNKHILHSSTELHRKMAYYLENFGQAFTG-PSHGWE 1266
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ PKVL D++ES GA+++D ++VW+ K LL+P+ +PET++ PV EL E C
Sbjct: 1267 AGIGLPKVLGDVIESIAGAIYLDSKYDKEMVWRSMKPLLEPLATPETVERDPVKELQEFC 1326
Query: 244 QKNKLKVKFVDLWK---ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ + + S + +E + K +A A K L +++
Sbjct: 1327 DRRSYSRSYTKTHEGGVSSVVAEVQVEGTIYSATRSGRDKTVAQKLAVKSLLEDLK 1382
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S E LE +GDS L + T+ + Y G+LT+++ ++ L
Sbjct: 976 EALTTKECQEEF-SQESLETLGDSFLKYVTTQHLYTKYKLHHEGTLTKMKKNLISNAALC 1034
Query: 146 RVAIKLGLHKYLR----HNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV------LADI 195
++A L Y++ + K + + + L SNG+ K+ +AD
Sbjct: 1035 QLACNNNLVGYIQGEVFNPKGWFIPGLGYDTCGNKSFCLSSNGMYSLRKISIKSKRIADT 1094
Query: 196 VESTIGA 202
VE+ IGA
Sbjct: 1095 VEALIGA 1101
>gi|449505410|ref|XP_004162460.1| PREDICTED: LOW QUALITY PROTEIN: dicer-like protein 4-like [Cucumis
sativus]
Length = 1228
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 8/221 (3%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
LG+RF +K LL +A PS + Y+RLE++GD+VL+ L+T + YP L PG LT
Sbjct: 795 LGHRFLHKGLLLQALVHPSYHKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLT 854
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD--APK 190
LRS V E A VA+ +K+L + L I+ + I P + L PK
Sbjct: 855 DLRSVFVRNEAFANVAVDRFFYKFLLCDSTSLLSDIKSYVHFIKAPPFERDSLEQPRCPK 914
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
L D+VES++GAV +D ++ VWK+ + P++S + P+ ++ E CQ K+
Sbjct: 915 ALGDLVESSVGAVLVDTGFDMNCVWKIMLSFIDPIMSFSGFQLSPIRDITEFCQNCGWKL 974
Query: 251 KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
KF S+ + + +G A NR KDA
Sbjct: 975 KF-----NSSKMEGYYSVKAEVKGGNFHATASAANRRKKDA 1010
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 26/149 (17%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N + EA T C ER S ERLE +GDS L + + F + G LTR RS V
Sbjct: 599 NRILEALTTEKCQERI-SLERLEILGDSFLKFAVARYLFLTHDKFDEGELTRRRSYLVKN 657
Query: 142 EKLARVAIKLGLHKYLRHNKPLLEEQIREFS---------EAILDYPLHSNGLVDA---- 188
L ++A + L Y+R ++P Q E D H + +A
Sbjct: 658 FNLLKLATRKNLQVYIR-DQPFEPSQFYLLGRPCPRICNEETSKDIHSHDDATNNAKANE 716
Query: 189 -----------PKVLADIVESTIGAVFID 206
K ++D+VE+ +GA +D
Sbjct: 717 TKCSKGHHWLQKKTISDVVEALVGAFLVD 745
>gi|449457995|ref|XP_004146733.1| PREDICTED: dicer-like protein 4-like [Cucumis sativus]
Length = 1657
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 8/221 (3%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
LG+RF +K LL +A PS + Y+RLE++GD+VL+ L+T + YP L PG LT
Sbjct: 1224 LGHRFLHKGLLLQALVHPSYHKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLT 1283
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD--APK 190
LRS V E A VA+ +K+L + L I+ + I P + L PK
Sbjct: 1284 DLRSVFVRNEAFANVAVDRFFYKFLLCDSTSLLSDIKSYVHFIKAPPFERDSLEQPRCPK 1343
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
L D+VES++GAV +D ++ VWK+ + P++S + P+ ++ E CQ K+
Sbjct: 1344 ALGDLVESSVGAVLVDTGFDMNCVWKIMLSFIDPIMSFSGFQLSPIRDITEFCQNCGWKL 1403
Query: 251 KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
KF S+ + + +G A NR KDA
Sbjct: 1404 KF-----NSSKMEGYYSVKAEVKGGNFHATASAANRRKKDA 1439
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 26/149 (17%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
N + EA T C ER S ERLE +GDS L + + F + G LTR RS V
Sbjct: 1028 NRILEALTTEKCQERI-SLERLEILGDSFLKFAVARYLFLTHDKFDEGELTRRRSYLVKN 1086
Query: 142 EKLARVAIKLGLHKYLRHNKPLLEEQIREFS---------EAILDYPLHSNGLVDA---- 188
L ++A + L Y+R ++P Q E D H + +A
Sbjct: 1087 FNLLKLATRKNLQVYIR-DQPFEPSQFYLLGRPCPRICNEETSKDIHSHDDATNNAKANE 1145
Query: 189 -----------PKVLADIVESTIGAVFID 206
K ++D+VE+ +GA +D
Sbjct: 1146 TKCSKGHHWLQKKTISDVVEALVGAFLVD 1174
>gi|356565129|ref|XP_003550797.1| PREDICTED: dicer-like protein 4-like [Glycine max]
Length = 1636
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 7/221 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E LG+ F +K LL +AF PS + Y+RLE++GD+VL+ L+T F YP L PG
Sbjct: 1214 EGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYVFSAYPKLKPG 1273
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT LRS +VN + A +A+ K+L + L E I+++ + I P+ N + + P
Sbjct: 1274 QLTDLRSLSVNNKAFACLAVDRSFDKFLLCDSSGLSEAIKKYVDYI-RRPVSDNSIKEGP 1332
Query: 190 KV---LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-PETLKTHPVTELYEVCQK 245
K L D+VES +GA+ +D +++ VWK+ L ++ +L+ PV +L E+CQ
Sbjct: 1333 KCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDSIMKFSSSLQLSPVRDLRELCQS 1392
Query: 246 NKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNR 286
+ ++++F+ + + T +E ++ G G N+
Sbjct: 1393 HNMELEFLPVPSKLTK-RFSVEAKVSGNGVCETASATGQNK 1432
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C ERF S ERLE +GD+ L + + F ++ +L G LT+ RS VN L
Sbjct: 1024 EALTTEKCQERF-SLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLF 1082
Query: 146 RVAIKLGLHKYL--------------RHNKPLLEEQIREFSEAILDYPLHSNGLVDAP-- 189
++AIK L Y+ R L + +E L+ + +
Sbjct: 1083 KLAIKRNLQVYICDQTFDPTQFYALGRPCPRLCSNETKESIHFCLNSVKEQGKVTETQCN 1142
Query: 190 --------KVLADIVESTIGAVFID 206
K +AD+VE+ +GA +D
Sbjct: 1143 KNHHWLHRKTIADVVEALVGAFLVD 1167
>gi|359484756|ref|XP_002264486.2| PREDICTED: dicer-like protein 4 [Vitis vinifera]
Length = 1622
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E++LG+ F +K LL +A PS + Y+RLE++GD+VL+ L+T + +YP L PG
Sbjct: 1202 EKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPG 1261
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI----LDYPLHSNGL 185
+T LRS +VN + A VA+ LH++L + L E I+++ + I LD LH
Sbjct: 1262 QMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLSEAIKKYVDFIRTPTLDKDLHEGP- 1320
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
PK L D+VES +GA+ +D ++ W + +L ++S L+ +P+ EL E+CQ
Sbjct: 1321 -KCPKALGDLVESCMGAILLDKGFDLNHAWNIMLSILDRIMSFSDLQLNPIRELQELCQH 1379
Query: 246 NKLKVKF 252
+ ++F
Sbjct: 1380 HNWDLQF 1386
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 23/142 (16%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C ERF S ERLE +GD+ L + + F LY L G LTR RS VN L
Sbjct: 1016 EALTTEKCLERF-SLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLF 1074
Query: 146 RVAIKLGLHKYLRHNK--P----LLEEQIREFSEAILDYPLHSNGLVDAP---------- 189
++A++ L Y+R P L + E + +HS P
Sbjct: 1075 KLAVRRNLQVYIRDQSFDPGQFFALGHRCPRICEKETEMAIHSR-CGKTPTTEVRCSKCH 1133
Query: 190 -----KVLADIVESTIGAVFID 206
K +AD+VE+ +GA +D
Sbjct: 1134 HWLHKKTIADVVEALVGAFIVD 1155
>gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera]
Length = 1623
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E++LG+ F +K LL +A PS + Y+RLE++GD+VL+ L+T + +YP L PG
Sbjct: 1203 EKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPG 1262
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI----LDYPLHSNGL 185
+T LRS +VN + A VA+ LH++L + L E I+++ + I LD LH
Sbjct: 1263 QMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLSEAIKKYVDFIRTPTLDKDLHEGP- 1321
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
PK L D+VES +GA+ +D ++ W + +L ++S L+ +P+ EL E+CQ
Sbjct: 1322 -KCPKALGDLVESCMGAILLDKGFDLNHAWNIMLSILDRIMSFSDLQLNPIRELQELCQH 1380
Query: 246 NKLKVKF 252
+ ++F
Sbjct: 1381 HNWDLQF 1387
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 23/142 (16%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C ERF S ERLE +GD+ L + + F LY L G LTR RS VN L
Sbjct: 1017 EALTTEKCLERF-SLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLF 1075
Query: 146 RVAIKLGLHKYLRHNK--P----LLEEQIREFSEAILDYPLHSNGLVDAP---------- 189
++A++ L Y+R P L + E + +HS P
Sbjct: 1076 KLAVRRNLQVYIRDQSFDPGQFFALGHRCPRICEKETEMAIHSR-CGKTPTTEVRCSKCH 1134
Query: 190 -----KVLADIVESTIGAVFID 206
K +AD+VE+ +GA +D
Sbjct: 1135 HWLHKKTIADVVEALVGAFIVD 1156
>gi|29424049|gb|AAO73809.1| dicer-1 [Anopheles gambiae]
Length = 2259
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 43/268 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGYRF +++ L +A T S P R Y+RLE++GD++L+ L+T+ + P
Sbjct: 1986 EQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSP 2045
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEE---------------------- 166
G+LT LRSA VN A +A++ G HKY H P L+E
Sbjct: 2046 GALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYY 2105
Query: 167 ------QIREFSEAILDYPLHSNGL-----VDAPKVLADIVESTIGAVFIDCNSSIDIVW 215
++ E+ D P G+ V+ PK L D+ ES GA+F+D + S+D VW
Sbjct: 2106 LPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVW 2165
Query: 216 KVFKELLKPMIS--PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGR 273
KV+++++ P I ++ P+ EL E+ KF K + + + ++ G+
Sbjct: 2166 KVYRKMMGPEIEKFSSSVPKSPIRELLEM---EPETAKFGKPEKLTDGRRVRVTVEVFGK 2222
Query: 274 GAY---APKKEIAHNRAAKDALNNIERL 298
G + IA AAK AL +++L
Sbjct: 2223 GTFRGIGRNYRIAKCTAAKCALRQLKKL 2250
>gi|58382645|ref|XP_312076.2| AGAP002836-PA [Anopheles gambiae str. PEST]
gi|55241936|gb|EAA07793.2| AGAP002836-PA [Anopheles gambiae str. PEST]
Length = 2256
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 43/268 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGYRF +++ L +A T S P R Y+RLE++GD++L+ L+T+ + P
Sbjct: 1983 EQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSP 2042
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEE---------------------- 166
G+LT LRSA VN A +A++ G HKY H P L+E
Sbjct: 2043 GALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYY 2102
Query: 167 ------QIREFSEAILDYPLHSNGL-----VDAPKVLADIVESTIGAVFIDCNSSIDIVW 215
++ E+ D P G+ V+ PK L D+ ES GA+F+D + S+D VW
Sbjct: 2103 LPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVW 2162
Query: 216 KVFKELLKPMIS--PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGR 273
KV+++++ P I ++ P+ EL E+ KF K + + + ++ G+
Sbjct: 2163 KVYRKMMGPEIEKFSSSVPKSPIRELLEM---EPETAKFGKPEKLTDGRRVRVTVEVFGK 2219
Query: 274 GAY---APKKEIAHNRAAKDALNNIERL 298
G + IA AAK AL +++L
Sbjct: 2220 GTFRGIGRNYRIAKCTAAKCALRQLKKL 2247
>gi|347968645|ref|XP_003436256.1| AGAP002836-PB [Anopheles gambiae str. PEST]
gi|333467908|gb|EGK96757.1| AGAP002836-PB [Anopheles gambiae str. PEST]
Length = 2336
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 43/268 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGYRF +++ L +A T S P R Y+RLE++GD++L+ L+T+ + P
Sbjct: 2063 EQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSP 2122
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEE---------------------- 166
G+LT LRSA VN A +A++ G HKY H P L+E
Sbjct: 2123 GALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYY 2182
Query: 167 ------QIREFSEAILDYPLHSNGL-----VDAPKVLADIVESTIGAVFIDCNSSIDIVW 215
++ E+ D P G+ V+ PK L D+ ES GA+F+D + S+D VW
Sbjct: 2183 LPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVW 2242
Query: 216 KVFKELLKPMIS--PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGR 273
KV+++++ P I ++ P+ EL E+ KF K + + + ++ G+
Sbjct: 2243 KVYRKMMGPEIEKFSSSVPKSPIRELLEM---EPETAKFGKPEKLTDGRRVRVTVEVFGK 2299
Query: 274 GAY---APKKEIAHNRAAKDALNNIERL 298
G + IA AAK AL +++L
Sbjct: 2300 GTFRGIGRNYRIAKCTAAKCALRQLKKL 2327
>gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni]
gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni]
Length = 2281
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 120/253 (47%), Gaps = 34/253 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ILGYRF +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2029 EAILGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2088
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F NG
Sbjct: 2089 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRI-----QQENGHCIS 2143
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++KP I
Sbjct: 2144 EEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMKPEIEQF 2203
Query: 228 PETLKTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
++ P+ EL E+ K K D + +F + G G IA
Sbjct: 2204 SNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAK 2260
Query: 285 NRAAKDALNNIER 297
AAK AL +++
Sbjct: 2261 CTAAKCALRQLKK 2273
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
ERLE +GDS L +T + Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1767 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1823
>gi|302826370|ref|XP_002994673.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
gi|300137177|gb|EFJ04260.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
Length = 176
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN-G 184
LPPG+LT LRSA VN + AR+ ++ GLH++L+H L+ +IR+F + + + P S
Sbjct: 1 LPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGLVELDCEIRKFVQNVKEKPDASCFE 60
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
+ APKVL D++ES GA+F+D N ++ +W+V LL P+++P TL+ HPV L E+C
Sbjct: 61 DLSAPKVLGDLLESITGAIFVDTNFDLERLWRVVLPLLSPLVTPATLRFHPVHILMELCA 120
Query: 245 KNKLKVKFVDLWKESTAFHI-FIEDQLLGRGAYAPKKEIAHNRAAK 289
+ +KV F +T + F E+ L+ P+K + A K
Sbjct: 121 RKGMKVSFFRTEATTTEVRVTFGEESLVETSQEKPRKSAKIDAALK 166
>gi|57236094|gb|AAW48724.1| dicer-1 [Aedes aegypti]
Length = 2192
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 124/255 (48%), Gaps = 25/255 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+ LGY + LL+ CP R Y+RLE++GD+VL+ L+T+ + PG
Sbjct: 1941 EDSLGYHHSRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPG 2000
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD--------YPLH 181
+LT LRSA VN A +A++ HKY RH P L + I F D Y L
Sbjct: 2001 ALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISEEYYLI 2060
Query: 182 SNGLVD------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKT 233
S D PK L D+ ES GA+F+D N S+D VWKV++ ++ P I ++
Sbjct: 2061 SEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFSNSVPK 2120
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P+ EL E+ KF K + + + ++ G+G + IA AAK
Sbjct: 2121 SPIRELLEL---EPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAAKC 2177
Query: 291 ALNNIER--LLNEKR 303
AL +++ L+N++R
Sbjct: 2178 ALRQLKKMGLINKRR 2192
>gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
lyrata]
gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
lyrata]
Length = 786
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 93/152 (61%), Gaps = 13/152 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NK LL+EA T RF +RLE++GDSVL + L YPNL
Sbjct: 8 EKILNYSFKNKTLLKEAIT---LSPRF---KRLEFLGDSVLEVALANYIHHAYPNLKLQE 61
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYL---RHNKPLLEEQIREFSEAIL--DYPLHSNGL 185
L LR+ANVN EK AR +K L++++ + + P E+I+EFSEA+ D P+ GL
Sbjct: 62 LCDLRTANVNNEKFARATVKHNLYQFIIGEKSSSP--SEKIKEFSEAVSKEDVPVPYGGL 119
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKV 217
V+APKVL DIVES GAV+ID + + W+V
Sbjct: 120 VEAPKVLGDIVESIAGAVYIDVDFDVQRFWEV 151
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 13/232 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NKNLL+EA S +++L +VG + L L +T + YPN P
Sbjct: 476 EKILNYVFTNKNLLKEALRQTSS-----LFQKLRFVGRAALVLAITNHIYLRYPNFEPRE 530
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--DYPLHSNGLVD- 187
L L+ N + LARVA+K +H++ + E++I FS+ + D P+ S+G +
Sbjct: 531 LELLQRGNTCNKTLARVAVKHNIHQFF-IGQFKSEKKIEAFSKVVGKEDDPVPSDGRSER 589
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
VL+D+VES GAV+ID N I +W+ F+ L +P+ + + L+ P C +K
Sbjct: 590 TTNVLSDLVESVAGAVYIDMNFDIKRLWESFRGLFEPLYTLDDLRLRPQPIHTLSCLGDK 649
Query: 248 LKVKFVDLWKESTA----FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
F ++E + H++++D+L+ G ++ A AA +A+ +
Sbjct: 650 DGKHFDFRYEEKGSNRYKAHVYLDDKLIASGKKKNSRDDAKMSAAMEAVRKL 701
>gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum]
Length = 1402
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 101/184 (54%), Gaps = 15/184 (8%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
D EE++GY+F + LL A T PS P +R SY+RLE++GD+VL+L+ + F YP+
Sbjct: 1123 DIEELVGYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVCVRYMFQKYPH 1182
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
P LT + A V+ + L VA+++G H+ LR +L+ IRE+ I D +SNG
Sbjct: 1183 ADPQWLTEHKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDHAIREYEVDIQDAKANSNGA 1242
Query: 186 VD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KT 233
VD PK L D++E+ IGAVF+D +IV ++ + P T+
Sbjct: 1243 VDFWTSLKAPPKALPDVLEAFIGAVFVDSGFQYNIVERLVNTFILPYFVDMTVFDNFAGQ 1302
Query: 234 HPVT 237
HP T
Sbjct: 1303 HPTT 1306
>gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis]
gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis]
Length = 2256
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 119/253 (47%), Gaps = 34/253 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2004 EASLGYTFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2063
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HKY RH P L + I F NG
Sbjct: 2064 GALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRI-----QQENGHCIS 2118
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
V+ PK L D+ ES GA+F+D N S+D+VW+VF ++KP I
Sbjct: 2119 EEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVFSNMMKPEIEQF 2178
Query: 228 PETLKTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
++ P+ EL E+ K K D + +F + G G IA
Sbjct: 2179 SNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAK 2235
Query: 285 NRAAKDALNNIER 297
AAK AL +++
Sbjct: 2236 CTAAKCALRQLKK 2248
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
ERLE +GDS L +T + Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1745 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1801
>gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis]
gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis]
Length = 2050
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 127/254 (50%), Gaps = 35/254 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GYRF ++ L +AFT S + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1798 EARIGYRFRDRAYLLQAFTHASYHYNRLTDCYQRLEFLGDAVLDYLITRHLYDDPQRHSP 1857
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A+K H+Y ++ P L I+ F E HS+G
Sbjct: 1858 GTLTDLRSALVNNTFFASLAVKYDFHRYFKNVSPGLFAVIQRFVET----KCHSDGFRYH 1913
Query: 186 ---------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
V+ PK L DI ES GA+F+D N S+D VW+V+ ++KP I E
Sbjct: 1914 EKYYLEEEECEEAEEVEVPKALGDIFESVAGAIFLDSNMSLDTVWRVYYAMMKPEI--EY 1971
Query: 231 LKTH----PVTELYEV-CQKNKLKVKFVDL-WKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
TH P+ EL E+ Q K + + L K +F + + +G G K IA
Sbjct: 1972 FSTHVPKSPIRELLELEPQTAKFERAEMTLNGKVRIRVEVFGKGRFVGVGR---NKRIAK 2028
Query: 285 NRAAKDALNNIERL 298
AAK AL ++R+
Sbjct: 2029 CTAAKRALRALKRM 2042
>gi|413933740|gb|AFW68291.1| hypothetical protein ZEAMMB73_565304 [Zea mays]
Length = 462
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Query: 57 SESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSY--ERLEYVGDSVLNLL 114
++SE L +A +L + +L Y F + +LL EA T S + ERLE++GD+VL+ +
Sbjct: 211 TKSEELIDAESL--QTMLKYVFYDTSLLVEALTHSSYNITGITACNERLEFLGDAVLDYI 268
Query: 115 LTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPL-----LEEQIR 169
LT + YPN P LT LR A+VN A A+K GLHK++ H+ LE R
Sbjct: 269 LTYYFYRKYPNCTPALLTNLRKASVNNCCYAHAAVKAGLHKHILHSSSKQMVNDLENSGR 328
Query: 170 EFSEAILDYPLHS-NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
FS P H + P+ LAD+ E+ GA+++D + ++VW + LL+P+ +P
Sbjct: 329 SFSG-----PSHGWEAGISLPEDLADLFEAIAGAIYVDSGNDKEVVWSAIRRLLEPLATP 383
Query: 229 ETLKTHPVTELYEVCQ 244
T++ PV+EL E+C+
Sbjct: 384 GTMEPDPVSELKELCE 399
>gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis]
gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis]
Length = 2250
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 120/253 (47%), Gaps = 34/253 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F++++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1998 ESSLGYTFSDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2057
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HKY RH P L + I F NG
Sbjct: 2058 GALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRI-----QQENGHIIS 2112
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
V+ PK L D+ ES GA+F+D N S+D+VW+V+ ++KP I
Sbjct: 2113 EEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMKPEIEQF 2172
Query: 228 PETLKTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
++ P+ EL E+ K K D + +F + G G IA
Sbjct: 2173 SNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAK 2229
Query: 285 NRAAKDALNNIER 297
AAK AL +++
Sbjct: 2230 CTAAKCALRQLKK 2242
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
ERLE +GDS L +T + Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1736 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1792
>gi|345494561|ref|XP_001602524.2| PREDICTED: endoribonuclease Dicer [Nasonia vitripennis]
Length = 1450
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 105/192 (54%), Gaps = 20/192 (10%)
Query: 50 NEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS-CPER-FFSYERLEYVG 107
N + GD + +P A + EE LGY+F N+ L +AFT PS P R SY+RLE++G
Sbjct: 1232 NPQLGDGDVNVHIPWAQTM--EERLGYKFRNRAFLLQAFTHPSYMPNRQTASYQRLEFLG 1289
Query: 108 DSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ 167
D+VL+ LLT + NL PG LT LRSA VN A +A++ GLH L P L +
Sbjct: 1290 DAVLDFLLTIHIYETCGNLSPGELTDLRSALVNNITFACLAVRYGLHTALLALAPKLFDL 1349
Query: 168 IREFS--EAILDYPLHSNGL--------------VDAPKVLADIVESTIGAVFIDCNSSI 211
I +F + +Y + L VD PKVL DI ES IGA+F+D ++
Sbjct: 1350 IDKFVKFQENRNYKIDDELLWVLLEEEECNMAEHVDVPKVLGDIYESVIGAIFLDSGKNL 1409
Query: 212 DIVWKVFKELLK 223
++VW+V L+K
Sbjct: 1410 EVVWQVIYNLMK 1421
>gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
lyrata]
gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
lyrata]
Length = 892
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 134/243 (55%), Gaps = 17/243 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NKNLL E T + P ++RL +VG+ L+L TK + YP L P
Sbjct: 354 EKILNYSFVNKNLLNELLTHNTSP----LFQRLMFVGEPALSLAFTKHLYLTYPKLEPKD 409
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---DYPLHSNGLVD 187
L+ LR AN ++ ARVA+K G+++++ N E I +F + + D +V
Sbjct: 410 LSLLRDANACNDRYARVAVKKGIYQFIISNVEKPERMILDFIDMMGKEDDPDPDPYRVVK 469
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE---LYEVCQ 244
APK+LA++V + GAV+ID N ++ +W++F+ L +P+ + + L+ P L+ +
Sbjct: 470 APKILANLVAAVAGAVYIDVNYNVQRLWEIFRGLFEPIYTLDDLRMQPKPPFLMLFRLAD 529
Query: 245 KNKLKVKF----VDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI-ERLL 299
K+ ++ F VD +++ A ++++D + G + + + A AA++AL + E +L
Sbjct: 530 KHGKRIDFRYSKVDGSRKNIA-QVYLDDMFIASGC-SKRIDTAKLLAAEEALQKLSECML 587
Query: 300 NEK 302
EK
Sbjct: 588 IEK 590
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NK LL++A T +R ++RLE+ GDSVL + T YPNL
Sbjct: 8 EKILNYSFTNKTLLKDAIT-----QRSTLFDRLEFFGDSVLEVAFTNYIRHTYPNLKVKE 62
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYL 157
L LR+ANV+ EK ARVA L + + L
Sbjct: 63 LCDLRTANVSNEKFARVAEILQIFRSL 89
>gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi]
gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi]
Length = 2254
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 121/249 (48%), Gaps = 26/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2002 EASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2061
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HKY RH P L + I F I HS
Sbjct: 2062 GALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2120
Query: 186 ------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
V+ PK L D+ ES GA+F+D + S+D+VW+V+ ++KP I ++
Sbjct: 2121 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSDLSLDVVWRVYSNMMKPEIEQFSNSV 2180
Query: 232 KTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
P+ EL E+ K K D + +F + G G IA AA
Sbjct: 2181 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAKCTAA 2237
Query: 289 KDALNNIER 297
K AL +++
Sbjct: 2238 KCALRQLKK 2246
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 36 EEALISHLLQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPE 95
+EA+ H + EKA S S S+ + N + E++G+ + +++ +A T S
Sbjct: 1679 QEAVAKHTAPAVTETEKA---SPSASISDFNFDYQPELVGHPGPSPSIILQALTM-SNAN 1734
Query: 96 RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHK 155
+ ERLE +GDS L +T + Y N+ G L+ LRS V L R+ + L +
Sbjct: 1735 DGINLERLETIGDSFLKYAITTYLYMTYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGE 1794
Query: 156 YL 157
Y+
Sbjct: 1795 YM 1796
>gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster]
Length = 865
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 119/253 (47%), Gaps = 34/253 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 613 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 672
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F NG
Sbjct: 673 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRI-----QQENGHCIS 727
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++ P I
Sbjct: 728 EEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQF 787
Query: 228 PETLKTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
++ P+ EL E+ K K D + +F + G G IA
Sbjct: 788 SNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAK 844
Query: 285 NRAAKDALNNIER 297
AAK AL +++
Sbjct: 845 CTAAKCALRQLKK 857
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 316 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 374
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 375 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 414
>gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia]
gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia]
Length = 2249
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 120/249 (48%), Gaps = 26/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F I HS
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2115
Query: 186 ------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++ P I ++
Sbjct: 2116 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2175
Query: 232 KTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
P+ EL E+ K K D + +F + G G IA AA
Sbjct: 2176 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAKCTAA 2232
Query: 289 KDALNNIER 297
K AL +++
Sbjct: 2233 KCALRQLKK 2241
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1700 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1758
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1759 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1798
>gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba]
gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba]
Length = 2250
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 123/255 (48%), Gaps = 27/255 (10%)
Query: 66 NNLDE-EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFL 122
+ DE EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ +
Sbjct: 1992 SGFDEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYED 2051
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
PG+LT LRSA VN A +A++ G HK+ RH P L + I F I HS
Sbjct: 2052 PRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHS 2110
Query: 183 NGL---------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS 227
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++ P I
Sbjct: 2111 ISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIE 2170
Query: 228 --PETLKTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEI 282
++ P+ EL E+ K K D + +F + G G I
Sbjct: 2171 QFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRI 2227
Query: 283 AHNRAAKDALNNIER 297
A AAK AL +++
Sbjct: 2228 AKCTAAKCALRQLKK 2242
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1701 SAILPTGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1759
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1760 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1799
>gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans]
gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans]
Length = 1533
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 120/249 (48%), Gaps = 26/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1281 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1340
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F I HS
Sbjct: 1341 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 1399
Query: 186 ------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++ P I ++
Sbjct: 1400 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 1459
Query: 232 KTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
P+ EL E+ K K D + +F + G G IA AA
Sbjct: 1460 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAKCTAA 1516
Query: 289 KDALNNIER 297
K AL +++
Sbjct: 1517 KCALRQLKK 1525
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 984 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1042
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1043 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1082
>gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta]
gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta]
Length = 2249
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 120/249 (48%), Gaps = 26/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F I HS
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2115
Query: 186 ------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++ P I ++
Sbjct: 2116 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2175
Query: 232 KTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
P+ EL E+ K K D + +F + G G IA AA
Sbjct: 2176 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAKCTAA 2232
Query: 289 KDALNNIER 297
K AL +++
Sbjct: 2233 KCALRQLKK 2241
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1700 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1758
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1759 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1798
>gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster]
gi|51316117|sp|Q9VCU9.1|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1
gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster]
Length = 2249
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 119/253 (47%), Gaps = 34/253 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F NG
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRI-----QQENGHCIS 2111
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++ P I
Sbjct: 2112 EEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQF 2171
Query: 228 PETLKTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
++ P+ EL E+ K K D + +F + G G IA
Sbjct: 2172 SNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAK 2228
Query: 285 NRAAKDALNNIER 297
AAK AL +++
Sbjct: 2229 CTAAKCALRQLKK 2241
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1700 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1758
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1759 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1798
>gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40]
gi|158706453|sp|Q2U6C4.2|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1523
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 122/252 (48%), Gaps = 25/252 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LGYRF LL AFT PS P + Y+RLE++GDS+L+++ + F+ YP+
Sbjct: 1245 EEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDKD 1304
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV- 186
P LT + A V+ + L +A+KLGLH +LRH L+ QI ++E I S G V
Sbjct: 1305 PQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGAVD 1364
Query: 187 ------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHP 235
D PK L D+VE+ +GA F+D + +V F+ +K T+ HP
Sbjct: 1365 YWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANKHP 1424
Query: 236 VTELYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNR 286
T L C LK + VD S + + + ++ G A A +
Sbjct: 1425 TTFLQNRLTNEYGCTNYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGT-ASSGRYAKVK 1483
Query: 287 AAKDALNNIERL 298
A++ AL+ +E +
Sbjct: 1484 ASEKALSVLENM 1495
>gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
Length = 2280
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 119/249 (47%), Gaps = 26/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGYRF +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2028 EASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2087
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F I HS
Sbjct: 2088 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2146
Query: 186 ------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++ P I ++
Sbjct: 2147 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2206
Query: 232 KTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
P+ EL E+ K K D + +F + G G IA AA
Sbjct: 2207 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAKCTAA 2263
Query: 289 KDALNNIER 297
K AL +++
Sbjct: 2264 KCALRQLKK 2272
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 62 LPNANNLD-EEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
LP + D + E++G+ + +++ +A T S + ERLE +GDS L +T +
Sbjct: 1729 LPAGFSFDLQPELVGHPGPSPSVILQALTM-SNANDGINLERLETIGDSFLKYAITTYLY 1787
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1788 ITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1824
>gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis]
gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis]
Length = 2278
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 119/249 (47%), Gaps = 26/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGYRF +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2026 EASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2085
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F I HS
Sbjct: 2086 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2144
Query: 186 ------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++ P I ++
Sbjct: 2145 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2204
Query: 232 KTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
P+ EL E+ K K D + +F + G G IA AA
Sbjct: 2205 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAKCTAA 2261
Query: 289 KDALNNIER 297
K AL +++
Sbjct: 2262 KCALRQLKK 2270
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 62 LPNANNLD-EEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
LP + D + E++G+ + +++ +A T S + ERLE +GDS L +T +
Sbjct: 1727 LPAGFSFDLQPELVGHPGPSPSVILQALTM-SNANDGINLERLETIGDSFLKYAITTYLY 1785
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1786 ITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1822
>gi|158706452|sp|A2RAF3.2|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1525
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 15/185 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE L YRF LL AFT PS P + Y+RLE++GDS+++++ ++ F +P+
Sbjct: 1247 EEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRD 1306
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV- 186
P LT + A V+ + L +A+KLGLH +L++ L+ QI +++E I S G V
Sbjct: 1307 PQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAVD 1366
Query: 187 ------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHP 235
D PK L D+VE+ +GAVF+D + + +++ + F++ +KP + HP
Sbjct: 1367 YWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANKHP 1426
Query: 236 VTELY 240
T L+
Sbjct: 1427 TTFLH 1431
>gi|125586950|gb|EAZ27614.1| hypothetical protein OsJ_11558 [Oryza sativa Japonica Group]
Length = 258
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 4/155 (2%)
Query: 102 RLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNK 161
RLE++GD++L+ L T+ + YP+ P LT LRSA+VN A A+K GL+K++ H+
Sbjct: 46 RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 105
Query: 162 PLLEEQIR----EFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKV 217
L ++ EF ++ + PKVL D++ES GA+++D ++VW+
Sbjct: 106 SELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRS 165
Query: 218 FKELLKPMISPETLKTHPVTELYEVCQKNKLKVKF 252
K LL+P+ +PET++ PV L E C + K+ +
Sbjct: 166 MKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITY 200
>gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88]
Length = 1493
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 15/185 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE L YRF LL AFT PS P + Y+RLE++GDS+++++ ++ F +P+
Sbjct: 1215 EEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRD 1274
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV- 186
P LT + A V+ + L +A+KLGLH +L++ L+ QI +++E I S G V
Sbjct: 1275 PQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAVD 1334
Query: 187 ------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHP 235
D PK L D+VE+ +GAVF+D + + +++ + F++ +KP + HP
Sbjct: 1335 YWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANKHP 1394
Query: 236 VTELY 240
T L+
Sbjct: 1395 TTFLH 1399
>gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 1487
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 25/249 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT PS P R Y+RLE++GD++L++ + + +P+ P
Sbjct: 1217 LGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQW 1276
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-- 188
LT + A V+ + L VA++LGLH +L H L+ QI + E I L S DA
Sbjct: 1277 LTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDSPDAWT 1336
Query: 189 -----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
PK L D+VE+ IGA+FID N S ++V + F++ LK T+ HP T
Sbjct: 1337 LTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYANKHPTTY 1396
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
L+ C LK V +VD + + D+++ G A A +A++
Sbjct: 1397 LHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVTEGV-ASSSRYAKLKASE 1455
Query: 290 DALNNIERL 298
AL+ +E L
Sbjct: 1456 AALSKLEGL 1464
>gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str.
Silveira]
Length = 1465
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 25/249 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT PS P R Y+RLE++GD++L++ + + +P+ P
Sbjct: 1195 LGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQW 1254
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-- 188
LT + A V+ + L VA++LGLH +L H L+ QI + E I L S DA
Sbjct: 1255 LTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDSPDAWT 1314
Query: 189 -----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
PK L D+VE+ IGA+FID N S ++V + F++ LK T+ HP T
Sbjct: 1315 LTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYANKHPTTY 1374
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
L+ C LK V +VD + + D+++ G A A +A++
Sbjct: 1375 LHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVTEGV-ASSSRYAKLKASE 1433
Query: 290 DALNNIERL 298
AL+ +E L
Sbjct: 1434 AALSKLEGL 1442
>gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae]
gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae]
Length = 2252
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 120/249 (48%), Gaps = 26/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2000 EASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2059
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F I HS
Sbjct: 2060 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2118
Query: 186 ------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
V+ PK L D+ ES GA+F+D N S+D+VW+V+ ++ P I ++
Sbjct: 2119 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMSPEIEQFSNSV 2178
Query: 232 KTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAA 288
P+ EL E+ K K D + +F + G G IA AA
Sbjct: 2179 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAKCTAA 2235
Query: 289 KDALNNIER 297
K AL +++
Sbjct: 2236 KCALRQLKK 2244
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
ERLE +GDS L +T + Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1746 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1802
>gi|238499729|ref|XP_002381099.1| dicer-1, putative [Aspergillus flavus NRRL3357]
gi|220692852|gb|EED49198.1| dicer-1, putative [Aspergillus flavus NRRL3357]
Length = 605
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 121/252 (48%), Gaps = 25/252 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LGYRF LL AFT PS P + Y+RLE++GDS+L+++ + F+ YP+
Sbjct: 327 EEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDKD 386
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV- 186
P LT + A + + L +A+KLGLH +LRH L+ QI ++E I S G V
Sbjct: 387 PQWLTEHKMAMASNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGAVD 446
Query: 187 ------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHP 235
D PK L D+VE+ +GA F+D + +V F+ +K T+ HP
Sbjct: 447 YWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANKHP 506
Query: 236 VTELYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNR 286
T L C LK + VD S + + + ++ G A A +
Sbjct: 507 TTFLQNRLTNEYGCTNYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGT-ASSGRYAKVK 565
Query: 287 AAKDALNNIERL 298
A++ AL+ +E +
Sbjct: 566 ASEKALSVLENM 577
>gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex]
Length = 1597
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 128/251 (50%), Gaps = 33/251 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYP---- 124
E L +RF N+ L +AF+ S + Y+RLE++GD+V + L+TK +LY
Sbjct: 1352 ERSLNFRFGNRFYLLQAFSHASYHHNRMTSCYQRLEFLGDAVFDYLITK---YLYDCRLF 1408
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--SEAILDYPL-- 180
L PG+L+ +RSA VN A +A++ G H+YL+H P + + I F + + D+
Sbjct: 1409 QLTPGALSDMRSALVNNVTFAVLAVRNGFHRYLKHLVPDVHQAIDRFVQQQEMCDHATPD 1468
Query: 181 -------HSNGLVDA---PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
H + + +A PKVL DI ES +GAVF+D + S+D VW+VF L++ I T
Sbjct: 1469 EFFLIGTHDDPMAEAVEVPKVLGDIFESLVGAVFLDSDMSLDAVWRVFYPLIRQEIEACT 1528
Query: 231 --LKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRG----AYAPKKEIAH 284
+ P+ +YE K KV+F L I I ++L G IA
Sbjct: 1529 RVVPKSPIRTIYE---KYPGKVQFKTLENLPDG-RICIAVEVLNNGRLYKGVGKNSRIAK 1584
Query: 285 NRAAKDALNNI 295
N AAK AL+ +
Sbjct: 1585 NTAAKYALSQL 1595
>gi|442570277|sp|Q1DKI1.3|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL1; Includes: RecName:
Full=ATP-dependent helicase DCL1
gi|392869759|gb|EJB11896.1| dicer-like protein 1 [Coccidioides immitis RS]
Length = 1500
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 25/249 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT PS P R Y+RLE++GD++L++ + + +P+ P
Sbjct: 1230 LGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQW 1289
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-- 188
LT + A V+ + L VA++LGLH +L H L+ QI + E I L S DA
Sbjct: 1290 LTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDPPDAWT 1349
Query: 189 -----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
PK L D+VE+ IGA+FID S ++V + F++ LK T+ HP T
Sbjct: 1350 LTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYANKHPTTY 1409
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
L+ C LK V +VD + + D+++ G A A +A++
Sbjct: 1410 LHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVAEGV-ASSSRYAKLKASE 1468
Query: 290 DALNNIERL 298
AL+ +E L
Sbjct: 1469 AALSKLEGL 1477
>gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
Length = 462
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 104/180 (57%), Gaps = 9/180 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY--ERLEYVGDSVLNLLLTKEQFF--LYPNL 126
+ I+GY F++ +LL EA T S + ERLE++GD+VL+ +LT + F+ YP
Sbjct: 223 QTIIGYVFDDSSLLIEALTHSSYNTAGITTCNERLEFLGDAVLDYILT-DYFYRKYYPKC 281
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-SEAILDYPLHS-NG 184
P LT LR A+VN A A+K GLHK++ H+ ++ I++ S P H
Sbjct: 282 TPALLTNLRKASVNNWCYAHAAVKAGLHKHILHSSS--KQMIKDLESSGPFSGPSHGWEP 339
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
+ P+ LAD+ E+ GA+++D + + VW+ + LL P+ +PET+ PV+EL E+C+
Sbjct: 340 GIGLPEDLADLFEAIAGAIYVDSGNDKEAVWRAMRRLLVPLATPETILLDPVSELKELCE 399
>gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS]
Length = 1357
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 25/249 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT PS P R Y+RLE++GD++L++ + + +P+ P
Sbjct: 1087 LGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQW 1146
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-- 188
LT + A V+ + L VA++LGLH +L H L+ QI + E I L S DA
Sbjct: 1147 LTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDPPDAWT 1206
Query: 189 -----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
PK L D+VE+ IGA+FID S ++V + F++ LK T+ HP T
Sbjct: 1207 LTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYANKHPTTY 1266
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
L+ C LK V +VD + + D+++ G A A +A++
Sbjct: 1267 LHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVAEGV-ASSSRYAKLKASE 1325
Query: 290 DALNNIERL 298
AL+ +E L
Sbjct: 1326 AALSKLEGL 1334
>gi|158706448|sp|Q0UI93.2|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL1; Includes: RecName:
Full=ATP-dependent helicase DCL1
Length = 1522
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 17/181 (9%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
YRF LL AF PS P E SY+RLE++GDS+L++ F+ YP+ P LT
Sbjct: 1231 YRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDKDPQWLT 1290
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD----- 187
++ V+ + L V +KLG H +++ N +L QIR++ + + +NG VD
Sbjct: 1291 EHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANGAVDYWVSV 1350
Query: 188 --APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-------KTHPVTE 238
PK LAD++E+ + A+F+D ++V K F LKP TL HP T
Sbjct: 1351 SEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTR 1410
Query: 239 L 239
L
Sbjct: 1411 L 1411
>gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus]
Length = 2482
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 25/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GY F +++ L +AFT S + + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2230 EEKIGYTFQDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKRQHSP 2289
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-------------- 174
G+LT LRSA VN A +A+K HKY RH P L+ IR+F +
Sbjct: 2290 GALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINEEYYF 2349
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLK 232
+ + + ++ PK L D+ ES GA+F+D SS+D VW V+ ++ I +
Sbjct: 2350 MEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFSGVVP 2409
Query: 233 THPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
P+ EL E+ K + VD K + IF + G G IA + AAK
Sbjct: 2410 KSPIRELLEMEPETAKFGKPERLVD-GKVRVSVEIFGKGSFSGVGR---NYRIAKSTAAK 2465
Query: 290 DALNNIERL 298
AL ++++L
Sbjct: 2466 RALRHLKKL 2474
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE +GDS L +T + YP G L+ LRS V+ L R+ + GL + +
Sbjct: 1990 ERLETIGDSFLKYAITTFLYCTYPQRHEGKLSYLRSKQVSNLNLYRLGKRKGLGECMVAT 2049
Query: 161 K 161
K
Sbjct: 2050 K 2050
>gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon]
Length = 2473
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 25/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GY F +++ L +AFT S + + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2221 EEKIGYTFRDRSYLLQAFTHASYYKNRLTGCYQRLEFLGDAVLDYLITRHLYEDKRQHSP 2280
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-------------- 174
G+LT LRSA VN A +A+K HKY RH P L+ IR+F +
Sbjct: 2281 GALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINEEYYF 2340
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLK 232
+ + + ++ PK L D+ ES GA+F+D SS+D VW V+ ++ I +
Sbjct: 2341 MEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFSGVVP 2400
Query: 233 THPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
P+ EL E+ K + VD K + IF + G G IA + AAK
Sbjct: 2401 KSPIRELLEMEPETAKFGKPERLVD-GKVRVSVEIFGKGSFSGVGR---NYRIAKSTAAK 2456
Query: 290 DALNNIERL 298
AL ++++L
Sbjct: 2457 RALRHLKKL 2465
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE +GDS L +T + YP G L+ LRS V+ L R+ + GL + +
Sbjct: 1981 ERLETIGDSFLKYAITTFLYCTYPQRHEGKLSYLRSKQVSNLNLYRLGKRKGLGECMVAT 2040
Query: 161 K 161
K
Sbjct: 2041 K 2041
>gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon]
Length = 2473
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 25/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GY F +++ L +AFT S + + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2221 EEKIGYTFRDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKRQHSP 2280
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-------------- 174
G+LT LRSA VN A +A+K HKY RH P L+ IR+F +
Sbjct: 2281 GALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINEEYYF 2340
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLK 232
+ + + ++ PK L D+ ES GA+F+D SS+D VW V+ ++ I +
Sbjct: 2341 MEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFSGVVP 2400
Query: 233 THPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
P+ EL E+ K + VD K + IF + G G IA + AAK
Sbjct: 2401 KSPIRELLEMEPETAKFGKPERLVD-GKVRVSVEIFGKGSFSGVGR---NYRIAKSTAAK 2456
Query: 290 DALNNIERL 298
AL ++++L
Sbjct: 2457 RALRHLKKL 2465
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE +GDS L +T + YP G L+ LRS V+ L R+ + GL + +
Sbjct: 1981 ERLETIGDSFLKYAITTFLYCTYPQRHEGKLSYLRSKQVSNLNLYRLGKRKGLGECMVAT 2040
Query: 161 K 161
K
Sbjct: 2041 K 2041
>gi|452979125|gb|EME78888.1| hypothetical protein MYCFIDRAFT_43585 [Pseudocercospora fijiensis
CIRAD86]
Length = 1516
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 16/211 (7%)
Query: 50 NEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYV 106
++ A ES ++ L E+ Y F LL AF PS P E+ SY+RLE++
Sbjct: 1197 DKPAYQTGESTAVQKDLALRVEKEHAYTFTYPRLLYSAFMHPSVPYMYEKVPSYQRLEFL 1256
Query: 107 GDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEE 166
GD++L++ F+ YP+ P LT + A V+ + L + + +G HK+LRH+ LE
Sbjct: 1257 GDALLDMASITYLFYKYPDKDPQWLTEHKMAMVSNKFLGALCVDIGFHKHLRHHHATLEH 1316
Query: 167 QIREFSEAILDYP-LHSNGLV-------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVF 218
Q+R+++ +L+ + G V D PK L DIVE+ IGA+FID N + V + F
Sbjct: 1317 QVRDYATELLEAKRIAGKGCVDYWTTVSDPPKCLPDIVEAYIGAMFIDSNFDYNQVQRFF 1376
Query: 219 KELLKPMISPETL-----KTHPVTELYEVCQ 244
+E +K T+ HP T L+ + Q
Sbjct: 1377 EEHVKCYFGDMTIYDSFANNHPCTHLHNMLQ 1407
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+YERLE++GD+ L T F + PN R + + L + A++L L++Y+R
Sbjct: 1038 NYERLEFIGDTFLKTATTISTFIMNPNENEFEFHVRRMLMLCNKNLYQTALQLKLYEYIR 1097
Query: 159 H------------NKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
K L+ + + E + + GL K +AD+ E+ IGA ++
Sbjct: 1098 SLAFNRRYWYPEGLKLLVGTGVVKGQEKEMYHEPREVGL--GEKTIADVCEALIGAAYL 1154
>gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni]
Length = 2174
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 130/275 (47%), Gaps = 61/275 (22%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFS-------------------YERLEYVGDSV 110
E L Y F + +LL +AFT PS + R S Y+RLE++GD+V
Sbjct: 1895 ESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEFLGDAV 1954
Query: 111 LNLLLTKEQFFLYPNL---PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ 167
L+ ++T+ FLY + PG LT LRSA VN A +A+++GLHKY R + P L
Sbjct: 1955 LDYVITR---FLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLLHT 2011
Query: 168 I----REFSEAILDYPLHSNGL--------VDAPKVLADIVESTIGAVFIDCNSSIDIVW 215
I R+ + A P ++ L V+ PK L+DI ES GA+F+D N S+D VW
Sbjct: 2012 IDVFVRKSNNANNTIPTNTGHLTTNRLSDDVEIPKALSDIFESLAGAIFLDSNFSLDTVW 2071
Query: 216 KVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAF---------HIFI 266
++F ++K I E Y C + ++L E T F I +
Sbjct: 2072 QIFYPIMKERI-----------ERYTACIPKSPVRQLLELEPEGTKFERARRMVDGRISV 2120
Query: 267 EDQLLGRGAY---APKKEIAHNRAAKDALNNIERL 298
+LG+G + +A + AAK AL + RL
Sbjct: 2121 CAHVLGKGRFYGVGRNYRLAKSLAAKRALRVLRRL 2155
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 92 SCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRS---ANVNTEKLAR-- 146
SC F + ER+E +GDS L ++T + YP G L+ LRS N N +L +
Sbjct: 1644 SCSNDFINLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNLYRLGKAK 1703
Query: 147 ------VAIKLGLHK-------YLRHNKPLLEEQIREF 171
+ K H+ Y+R +K L E I++F
Sbjct: 1704 DLQNRMIGCKFEPHENWIPPGYYVRQDKRLNNEIIKKF 1741
>gi|358366696|dbj|GAA83316.1| hypothetical protein AKAW_01431 [Aspergillus kawachii IFO 4308]
Length = 1404
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 101/185 (54%), Gaps = 15/185 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE L YRF LL AFT PS P + Y+RLE++GDS+++++ ++ F YP+
Sbjct: 1126 EEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARYPDRD 1185
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV- 186
P LT + A V+ + L +A+KLGLH +L++ L+ QI +++E I S V
Sbjct: 1186 PQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESESAVD 1245
Query: 187 ------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHP 235
D PK L D+VE+ +GAVF+D + +++ + F++ +KP + HP
Sbjct: 1246 YWTVTKDPPKCLPDMVEAYVGAVFVDSGFNFEVIEEFFRDHIKPFFEDMAIYDSFANKHP 1305
Query: 236 VTELY 240
T L+
Sbjct: 1306 TTFLH 1310
>gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator]
Length = 1479
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 22/212 (10%)
Query: 50 NEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVG 107
N G + +E +P A+++ E+ LGY+FNN+ L +AFT PS + Y+RLE++G
Sbjct: 1261 NPIIGIGNPNEHMPWADSI--EKRLGYKFNNRAYLLQAFTHPSYSVNRITDCYQRLEFLG 1318
Query: 108 DSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ 167
D+VL+ L+T + NL PG+LT LRSA VN A +A++ GLH L P L E
Sbjct: 1319 DAVLDFLITCHIYEFCGNLSPGALTDLRSALVNNITFACLAVRYGLHTCLLAYAPQLHEM 1378
Query: 168 IREFSEAILDYPLHSNG----------------LVDAPKVLADIVESTIGAVFIDCNSSI 211
I F + D N +D PKVL D+ E+ IGA+++D N ++
Sbjct: 1379 INRFVKFQEDRNYAINDELLWVLLEEEDCNIAEYIDVPKVLGDLFETLIGAIYLDSNRNL 1438
Query: 212 DIVWKVFKELLKPMIS--PETLKTHPVTELYE 241
VW++ + I + +PV +YE
Sbjct: 1439 AKVWEMVYSFMHKEIDEFSRNVPKNPVRVIYE 1470
>gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex]
Length = 1741
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 131/243 (53%), Gaps = 21/243 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLP- 127
EE + Y+FN+++ L +AF+ S + Y+RLE++GD+VL+ L+T+ +LY NLP
Sbjct: 1494 EEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLITR---YLYENLPR 1550
Query: 128 --PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI--------LD 177
PG+LT LRSA VN A +A + H+Y +H P L + + +F +A +
Sbjct: 1551 HPPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQIMDKFIKAQEENGHSINEE 1610
Query: 178 YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVT 237
Y + V+ PKVL D+ ES GA+++D + S++ VW+V+ ++K I E K P +
Sbjct: 1611 YYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVWRVYYNMMKKEID-EFSKNVPKS 1669
Query: 238 ELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKDALNN 294
+ E+ + +VKF + + + ++G+G + IA AAK AL
Sbjct: 1670 PIRELLELETDRVKFGKAERLPDG-RLRVTVDVIGKGTFKGIGRNYRIAKCTAAKYALRT 1728
Query: 295 IER 297
+E+
Sbjct: 1729 LEK 1731
>gi|383862048|ref|XP_003706496.1| PREDICTED: endoribonuclease Dcr-1-like [Megachile rotundata]
Length = 1952
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 22/253 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY+FN+ + L +AFT S P + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1699 EKNIGYKFNDISYLLQAFTHASYQPNKLTDCYQRLEFLGDAVLDYLITRHLYEDARQHSP 1758
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLL-----------EEQIREFSEA--- 174
G+LT LRSA VN A +A++ G HKY RH P L EE SE
Sbjct: 1759 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISEEYYL 1818
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH 234
I + V+ PK L D+ ES GA+++D S+D VW V+ ++K I E T+
Sbjct: 1819 IGEEKCEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYVIMKNEI--EQFSTN 1876
Query: 235 -PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF K + + + + G+G++ IA AAK
Sbjct: 1877 VPKSPIRELLELEPETAKFGKPEKLADGHRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKC 1936
Query: 291 ALNNIERLLNEKR 303
AL ++++ N R
Sbjct: 1937 ALKKLKQMQNYPR 1949
>gi|422398915|ref|NP_001116485.2| endoribonuclease Dicer-1 [Apis mellifera]
Length = 1952
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 126/254 (49%), Gaps = 24/254 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY+F++ + L +AFT S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1699 EKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDTRQHSP 1758
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------ 182
G+LT LRSA VN A +A++ G HKY RH P L I F I + HS
Sbjct: 1759 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVR-IQEENGHSISEEYY 1817
Query: 183 ---------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
V+ PK L D+ ES GA+++D S+D VW V+ ++K I E T
Sbjct: 1818 LIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYAIMKNEI--EQFST 1875
Query: 234 H-PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
+ P + + E+ + KF K + + + + G+G++ IA AAK
Sbjct: 1876 NVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAK 1935
Query: 290 DALNNIERLLNEKR 303
AL ++R+ N R
Sbjct: 1936 CALKKLKRMQNYSR 1949
>gi|350399948|ref|XP_003485689.1| PREDICTED: endoribonuclease Dicer-like [Bombus impatiens]
Length = 1490
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 106/201 (52%), Gaps = 22/201 (10%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQ 119
+P A+N++ + LGYRFNN+ L +AFT PS + Y+RLE++GD++L+ L+T
Sbjct: 1232 MPWASNIETK--LGYRFNNRGYLLQAFTHPSYTPNNMTECYQRLEFLGDAILDFLITNYI 1289
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS--EAILD 177
+ NL PG+LT LRSA VN A + ++ GLH L P L I F + +
Sbjct: 1290 YESCGNLNPGALTDLRSALVNNITFACLTVRHGLHIALLSYAPKLNNIIERFVKFQEERN 1349
Query: 178 YPLHSNGL--------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK 223
Y ++ L VD PKVL DI ES IGA+++D N ++ +VW + ++
Sbjct: 1350 YAVNDELLWILLEEDECNMAEHVDVPKVLGDIFESVIGAIYMDSNKNLTVVWNIVYSIMH 1409
Query: 224 PMIS--PETLKTHPVTELYEV 242
I + + P+ LYE
Sbjct: 1410 KEIDEFSKNIPKQPIRVLYET 1430
>gi|356571230|ref|XP_003553782.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
Length = 756
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 15/237 (6%)
Query: 74 LGYRFNNKNLLEEAFTDPSC--PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN--LPPG 129
L Y F + LL EA T S PE YERLE++GD+VL+ ++T + Y N
Sbjct: 515 LNYSFKDPYLLVEALTHSSGKRPEIRTCYERLEFLGDAVLDYVITMHFYKEYSNDKFSAE 574
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
T +RS +VN E A AIK L +++ + +++ I + E + + L S +
Sbjct: 575 FFTNMRSISVNNECYALSAIKAKLDEHILCDS-VVKNNIAQTMEGVKNLSLESTFGWELE 633
Query: 190 ----KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+VLAD++ES GA+F+D ++V++ K LL+P+++PET + HP++EL+E+CQK
Sbjct: 634 TYFCQVLADVIESIAGAIFVDSGYKKEVVFQSIKPLLEPLVTPETARRHPISELHELCQK 693
Query: 246 NKLKVKFVDLWKESTAFHIFIEDQLLGRG------AYAPKKEIAHNRAAKDALNNIE 296
K+K + + + IE + G A A + A AAKD L I+
Sbjct: 694 KGYKMKVYPPVRVNGETSVTIEVKTNGITYKNNPPAKASNNDTARKLAAKDVLKQIK 750
>gi|357607884|gb|EHJ65725.1| dicer-2 [Danaus plexippus]
Length = 1871
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 117/229 (51%), Gaps = 22/229 (9%)
Query: 36 EEALISHLLQDL--FVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSC 93
E+ +S L + + ++E E + L N+ D E ILGY+F + +LL EA + S
Sbjct: 1584 EDKFLSFLTKKVNTVISEGKATVQEVDWLLNSCRSDIETILGYKFKDPSLLLEALSHASY 1643
Query: 94 PERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKL 151
+ SYERLE++GD++L+ L+T + +L PG LT LRSA VN A ++L
Sbjct: 1644 IRNRYTRSYERLEFLGDAILDFLITAYIYENCGDLSPGDLTDLRSALVNNVTFASYVVRL 1703
Query: 152 GLHKYLRHN-KPLLEEQIREFSE--AILDYPLHSNGL-------------VDAPKVLADI 195
GLHKY +LE I+ F E LD+ L + L +D PK L+DI
Sbjct: 1704 GLHKYFCSQFNGVLENAIKTFVEHQEQLDHVLLEDVLYLIEEEDCNIAQYIDVPKALSDI 1763
Query: 196 VESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEV 242
ES GA+F+D + +VWKV ++ I ++K PV L E+
Sbjct: 1764 FESLTGAMFLDSGGDLKLVWKVIYRIMHKEIHDFSMKVPKQPVRVLMEM 1812
>gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum]
Length = 1865
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 24/247 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY+F +++ L +A T S + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1613 ERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTRMHSP 1672
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD- 187
G+LT LRSA VN A +A++ G H+Y R+ P L E + +F D + LVD
Sbjct: 1673 GALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQED---SGHTLVDE 1729
Query: 188 --------------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
PK L D+ ES GA+F+D S+D VWKV+ ++K I + K
Sbjct: 1730 LYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNKV 1789
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF K + + + ++ G+G + IA AAK
Sbjct: 1790 -PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNYRIAKCTAAKC 1848
Query: 291 ALNNIER 297
AL N+++
Sbjct: 1849 ALKNLKK 1855
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 59/202 (29%)
Query: 66 NNLDEEEILGYRFNNK-NLLEEAFTDP---------SCPERFFSYERLEYVGDSVLNLLL 115
N D E + ++F+ + NL+E P S + ERLE +GDS L +
Sbjct: 1356 NEYDISETMTFKFDEQPNLVEHPGPSPNVLLQALTMSNANDGINLERLETIGDSFLKYAI 1415
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNK--------PLLEEQ 167
T + Y N+ G L+ LRS V+ L R+ + GL +Y+ K P
Sbjct: 1416 TNYLYSKYENVHEGKLSHLRSKQVSNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYV 1475
Query: 168 IREFSEAILD--YPLHSNGLVDAP------------------------------------ 189
+E EA++D +P + + D
Sbjct: 1476 PKELEEALIDAQFPANCWTVADMAATRDMTLDDICSMVRQRGESLSLSNIIPYNLVTQHS 1535
Query: 190 ---KVLADIVESTIGAVFIDCN 208
K +AD VE+ IGA I+C
Sbjct: 1536 IPDKSIADCVEALIGAYLIECG 1557
>gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum]
Length = 1835
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 24/247 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY+F +++ L +A T S + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1583 ERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTRMHSP 1642
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD- 187
G+LT LRSA VN A +A++ G H+Y R+ P L E + +F D + LVD
Sbjct: 1643 GALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQED---SGHTLVDE 1699
Query: 188 --------------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
PK L D+ ES GA+F+D S+D VWKV+ ++K I + K
Sbjct: 1700 LYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNKV 1759
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKD 290
P + + E+ + KF K + + + ++ G+G + IA AAK
Sbjct: 1760 -PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNYRIAKCTAAKC 1818
Query: 291 ALNNIER 297
AL N+++
Sbjct: 1819 ALKNLKK 1825
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 59/202 (29%)
Query: 66 NNLDEEEILGYRFNNK-NLLEEAFTDP---------SCPERFFSYERLEYVGDSVLNLLL 115
N D E + ++F+ + NL+E P S + ERLE +GDS L +
Sbjct: 1326 NEYDISETMTFKFDEQPNLVEHPGPSPNVLLQALTMSNANDGINLERLETIGDSFLKYAI 1385
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNK--------PLLEEQ 167
T + Y N+ G L+ LRS V+ L R+ + GL +Y+ K P
Sbjct: 1386 TNYLYSKYENVHEGKLSHLRSKQVSNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYV 1445
Query: 168 IREFSEAILD--YPLHSNGLVDAP------------------------------------ 189
+E EA++D +P + + D
Sbjct: 1446 PKELEEALIDAQFPANCWTVADMAATRDMTLDDICSMVRQRGESLSLSNIIPYNLVTQHS 1505
Query: 190 ---KVLADIVESTIGAVFIDCN 208
K +AD VE+ IGA I+C
Sbjct: 1506 IPDKSIADCVEALIGAYLIECG 1527
>gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei]
Length = 2473
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 123/249 (49%), Gaps = 25/249 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GY F +++ L +A T S + + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2221 EEKIGYTFRDRSYLLQASTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKRQHSP 2280
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-------------- 174
G+LT LRSA VN A +A+K HKY RH P + IR+F +
Sbjct: 2281 GALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGPDRVIRDFVKMQEENGHKINEEYYF 2340
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLK 232
+ + + ++ PK L D+ ES GA+F+D SS+D VW V+ ++ P I +
Sbjct: 2341 MEEDEREAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCPEIERFSGVVP 2400
Query: 233 THPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
P+ EL E+ K + VD K + IF + G G IA + AAK
Sbjct: 2401 KSPIRELLEMEPETAKFGKPERLVD-GKVRVSVEIFGKGSFSGVGR---NYRIAKSTAAK 2456
Query: 290 DALNNIERL 298
AL ++++L
Sbjct: 2457 RALRHLKKL 2465
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE +GDS L +T + YP G L+ LRS V+ L R+ + GL + +
Sbjct: 1981 ERLETIGDSFLKYAITTFLYCTYPQRHEGKLSYLRSKQVSNLNLYRLGKRKGLGECMVAT 2040
Query: 161 K 161
K
Sbjct: 2041 K 2041
>gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator]
Length = 1807
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 123/249 (49%), Gaps = 24/249 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY+F + + L +AFT S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1554 EKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSP 1613
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------ 182
G+LT LRSA VN A +A++ G HKY RH P L I F I + HS
Sbjct: 1614 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVR-IQEENGHSISEEYY 1672
Query: 183 ---------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
V+ PK L D+ ES GA+++D S+D VW V+ ++K I E T
Sbjct: 1673 LIGKEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEI--EQFST 1730
Query: 234 H-PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
+ P + + E+ + KF K + + + + G+G++ IA AAK
Sbjct: 1731 NVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAK 1790
Query: 290 DALNNIERL 298
AL ++R+
Sbjct: 1791 CALKKLKRI 1799
>gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi]
Length = 1651
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 101/192 (52%), Gaps = 23/192 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY+F N+ L +AFT + SYE+LE++GD+VL+ L+T F P++ P
Sbjct: 1405 ERTVGYKFRNRTFLLQAFTHATYTTNTLTKSYEQLEFLGDAVLDFLITLYIFERNPHMSP 1464
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-------ILDY--- 178
G LT LRSA VN LA V ++ LH Y+ P+L ++I +F E I D+
Sbjct: 1465 GQLTDLRSALVNNVTLACVLVRFRLHHYILSQSPMLTDKIDKFVEVQGQKRNRIGDWVRL 1524
Query: 179 -------PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
PL VD PKVL D+ E+ IGA+++D + W++ LL+ I +L
Sbjct: 1525 LTEESETPLAE--YVDVPKVLGDVFEALIGAIYLDSGCDLVTTWRICYSLLQREIENFSL 1582
Query: 232 KT--HPVTELYE 241
T V +LYE
Sbjct: 1583 DTPIQVVRQLYE 1594
>gi|340712553|ref|XP_003394821.1| PREDICTED: endoribonuclease Dicer-like [Bombus terrestris]
Length = 1488
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 106/201 (52%), Gaps = 22/201 (10%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQ 119
+P A+N++ + LGY+FNN+ L +AFT PS P Y+RLE++GD++L+ L+T
Sbjct: 1230 MPWASNIETK--LGYQFNNRGYLLQAFTHPSYTPNNMTECYQRLEFLGDAILDFLITNYI 1287
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS--EAILD 177
+ NL PG+LT LRSA VN A + ++ GLH L P L I F + +
Sbjct: 1288 YESCGNLNPGALTDLRSALVNNITFACLTVRHGLHIALLSYAPKLNNVIERFVKFQEERN 1347
Query: 178 YPLHSNGL--------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK 223
Y ++ L VD PKVL DI ES IGA+++D N ++ +VW + ++
Sbjct: 1348 YAVNDELLWILLEEDECNMAEHVDVPKVLGDIFESVIGAIYLDSNKNLSVVWNIVYSIMH 1407
Query: 224 PMIS--PETLKTHPVTELYEV 242
I + + P+ LYE
Sbjct: 1408 KEIDEFSKNIPKQPIRVLYET 1428
>gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis]
gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis]
Length = 471
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 43/290 (14%)
Query: 28 VAMEEAHQEEALISHLLQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEA 87
V + + + EE+ + +L D+F D EE LGY F K LL EA
Sbjct: 199 VRVNDVNDEESAVMTILGDVFYT------------------DLEETLGYTFKRKELLLEA 240
Query: 88 FTDPSCPERFFS--YERLEYVGDSVLNLLLT---KEQFFLYPNLPPGSLTRLRSANVNTE 142
T PS + Y+RLE++GD++L+ L+T +E F ++ PG +T +RSA VN
Sbjct: 241 ITHPSYVRNRLTPCYQRLEFLGDAILDFLVTVYIQENF---KDMNPGLITDIRSALVNNS 297
Query: 143 KLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--DYPLHSNGL-------------VD 187
LA +++K HKYL + L + I F + + ++ ++ L V
Sbjct: 298 TLACLSVKYDFHKYLLYTSSPLNKCIENFVKIQISNNHAVNEQALITLEENDAIMAESVT 357
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQK 245
PK L DI ES GA+FID +S++ VW VF +++K + T+ V L+E+C +
Sbjct: 358 VPKALGDIFESLAGAIFIDSENSLETVWNVFYKIMKKELDEFTVNPPKTAVRVLHEICGE 417
Query: 246 NKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
V S I+ +D+ + + K+ A A K AL I
Sbjct: 418 KPFFETTVYEKVVSVKCSIYYKDEEIVAHGFGDNKKDAKKSACKMALKQI 467
>gi|156371137|ref|XP_001628622.1| predicted protein [Nematostella vectensis]
gi|156215603|gb|EDO36559.1| predicted protein [Nematostella vectensis]
Length = 261
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 31/252 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS----YERLEYVGDSVLNLLLTKEQFFLYPNL 126
E LGY F ++++L +A T S P + S YE+LE++GD++L+ L+T+ +P L
Sbjct: 10 EASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPRL 69
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--------------S 172
PG++T LRSA VN LA + I+ HK++R L + +R F
Sbjct: 70 SPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEKETRPD 129
Query: 173 EAILDYPLHSNG--LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
+ +L G ++ PKVL D+ E+ +GA+++DC ++ W V LL P+I E
Sbjct: 130 QLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPLLTPII--EH 187
Query: 231 LKTH-PVTELYEVCQKNKLKVKFVDLWKESTAFH-----IFIEDQLLGRGAYAPKKEIAH 284
H P++ ++ + F L + H + + +G G A +IA
Sbjct: 188 YSVHLPISPTRQLVEMMPGAATFTCLSQNVIGHHACELVVKGYGRFMGTGRNA---QIAR 244
Query: 285 NRAAKDALNNIE 296
+ AA+ AL I+
Sbjct: 245 STAAQHALARIK 256
>gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa]
gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa]
Length = 1928
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 121/257 (47%), Gaps = 26/257 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GYRFN++ L +AFT S + + Y+RLE++GD+VL+ ++T+ F + P
Sbjct: 1666 EDFIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHSSHYSP 1725
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +AIK HK+ P L I +F + L S
Sbjct: 1726 GVLTDLRSALVNNTIFASLAIKHNFHKHFIAMCPRLHHMIEKFVCLCTEKNLSSANFNEE 1785
Query: 186 -----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
++ PK + DI ES GA+++D S+DIVW+VF L+K I
Sbjct: 1786 MYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDIVWRVFYNLMKETID- 1844
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWK--ESTAFHIFIEDQLLGR-GAYAPKKEIAHN 285
E P + + E+ + + +F L + E+ + ++ Q R IA
Sbjct: 1845 ECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYRIAKC 1904
Query: 286 RAAKDALNNIERLLNEK 302
AAK AL + L EK
Sbjct: 1905 TAAKRALRYLRSLKKEK 1921
>gi|158706457|sp|A1CBC9.2|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1534
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFF----SYERLEYVGDSVLNLLLTKEQFFLY 123
L EE LGY F LL A T PS P ++ Y+RLE++GDS+L+++ ++ F +
Sbjct: 1251 LQVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRF 1310
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
P+ P LT + A V+ + L +A+KLG HK+++ L+ QI + E I S
Sbjct: 1311 PDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESE 1370
Query: 184 GLV-------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL----- 231
G V D PK L D+VE+ +GA+F+D + S +++ F+ +KP ++
Sbjct: 1371 GAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFA 1430
Query: 232 KTHPVTELY 240
HP T L+
Sbjct: 1431 NKHPTTFLH 1439
>gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
Length = 1552
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFF----SYERLEYVGDSVLNLLLTKEQFFLY 123
L EE LGY F LL A T PS P ++ Y+RLE++GDS+L+++ ++ F +
Sbjct: 1269 LQVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRF 1328
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
P+ P LT + A V+ + L +A+KLG HK+++ L+ QI + E I S
Sbjct: 1329 PDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESE 1388
Query: 184 GLV-------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL----- 231
G V D PK L D+VE+ +GA+F+D + S +++ F+ +KP ++
Sbjct: 1389 GAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFA 1448
Query: 232 KTHPVTELY 240
HP T L+
Sbjct: 1449 NKHPTTFLH 1457
>gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR]
Length = 1502
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 16/239 (6%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT S P + + Y+RLE++GDS+L+++ + + YP+ P
Sbjct: 1246 LGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEHLYHHYPDRDPQW 1305
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPLHSN 183
LT + A V+ + L VA+KLGLHK+L + L QI ++E I D P
Sbjct: 1306 LTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAWT 1365
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D PK L D++E+ IGA+F+D N S ++V F+ LK + + + + +
Sbjct: 1366 TTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLK-----QYFEDMSIYDAFANK 1420
Query: 244 QKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNEK 302
+V+ VD + + + D+ + +G A A +A++ AL +E L + K
Sbjct: 1421 HPTAGEVQMVDSTEPRIYAAVIVHDKFVAQGI-ASSVRYAKTKASEAALAKLEGLASFK 1478
>gi|240275432|gb|EER38946.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143]
Length = 495
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 25/253 (9%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT S P + + Y+RLE++GDS+L+++ + + YP+ P
Sbjct: 157 LGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQW 216
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPLHSN 183
LT + A V+ + L V +KLGLHK+L + L QI ++E I D P
Sbjct: 217 LTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAWT 276
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
D PK L D++E+ IGA+F+D N S ++V F+ LK ++ HP T
Sbjct: 277 TTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSVYDAFANKHPTTY 336
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ C LK V+ VD + + + D+ + +G A A +A++
Sbjct: 337 FHNRLTIDFGCANYCLKAGEVQMVDSTEPRIYAAVIVHDKFVAQGI-ASSVRYAKTKASE 395
Query: 290 DALNNIERLLNEK 302
AL +E L + K
Sbjct: 396 AALAKLEGLASFK 408
>gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
Length = 1979
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 25/255 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY+F + + L +AFT S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1725 EKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSP 1784
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------ 182
G+LT LRSA VN A +A++ G HKY RH P L I F I + HS
Sbjct: 1785 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVR-IQEENGHSISEEYY 1843
Query: 183 ---------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
V+ PK L D+ ES GA+++D S+D VW V+ ++K I E T
Sbjct: 1844 LIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEI--EQFST 1901
Query: 234 H-PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
+ P + + E+ + KF K + + + + G+G++ IA AAK
Sbjct: 1902 NVPKSPIRELLELEPETAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAK 1961
Query: 290 DALNNIE-RLLNEKR 303
AL ++ R+ N R
Sbjct: 1962 CALKKLKSRIQNYSR 1976
>gi|396465578|ref|XP_003837397.1| similar to dicer-like protein 1 [Leptosphaeria maculans JN3]
gi|312213955|emb|CBX93957.1| similar to dicer-like protein 1 [Leptosphaeria maculans JN3]
Length = 1588
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 21/198 (10%)
Query: 63 PNANNLDE----EEILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLL 115
P A LD E + Y F L+ AFT PS E +Y+RLE++GDS+L++
Sbjct: 1274 PTAAMLDAARQIEAVHPYHFKYPRLVRSAFTHPSYAYMFEHIPNYQRLEFLGDSLLDMAF 1333
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI 175
++ YP+ P LT ++ V+ + L V +KLG H++L+ N +L QIR++ I
Sbjct: 1334 IMHLYYKYPDKDPQWLTEHKTPMVSNKFLGAVCVKLGWHRHLKSNTAILSTQIRDYVLEI 1393
Query: 176 LDYPLHSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
+ +NG VD PK LAD++E+ + A+F+D +V F LKP +
Sbjct: 1394 DEAEREANGAVDYWVNVHEPPKCLADVIEAYVAALFVDSQFDFSVVQSFFDRHLKPFFAD 1453
Query: 229 ETL-------KTHPVTEL 239
TL HP T L
Sbjct: 1454 MTLDAYENFASNHPTTRL 1471
>gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera]
Length = 1946
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 24/249 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY+F++ + L +AFT S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1699 EKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDTRQHSP 1758
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG---- 184
G+LT LRSA VN A +A++ G HKY RH P L I F I + HS G
Sbjct: 1759 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVR-IQEENGHSIGEEYY 1817
Query: 185 -----------LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
V+ PK L D+ ES GA+++ S+D VW V+ ++K I E T
Sbjct: 1818 LIGEEECEEAEDVEVPKALGDVFESLAGAIYLGSGMSLDAVWSVYYAIMKNEI--EQFST 1875
Query: 234 H-PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
+ P + + E+ + KF K + + + + G+G++ IA AAK
Sbjct: 1876 NVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAK 1935
Query: 290 DALNNIERL 298
AL ++R+
Sbjct: 1936 CALKKLKRI 1944
>gi|378405592|gb|AFB82635.1| dicer-2 [Marsupenaeus japonicus]
Length = 1502
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 126/242 (52%), Gaps = 19/242 (7%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY F +++ + +A T S + Y+RLE++GD+VL+ L+T F + + P
Sbjct: 1243 EKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFTDYSP 1302
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL-------- 180
G L+ LRS V + L R A K LH++L H P LE I +F + PL
Sbjct: 1303 GQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHINPKLEASIDKFLSILHQDPLGEELNTED 1362
Query: 181 --HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI--SPETLKTHPV 236
V+ PK L D+VE+ IGAV++D N S+ + W+V + +L+ ++ S +T++ +P+
Sbjct: 1363 DVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVIERILEDLLNTSIQTIQLNPI 1422
Query: 237 TELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKE---IAHNRAAKDALN 293
+L E K +V+FV + + ++ ++ G G + + +A + A AL
Sbjct: 1423 RQLLEEVPGEK-QVEFVKGEDDGSEKSTYVV-KVKGFGTFTASGKNYRVAKKKVAAIALK 1480
Query: 294 NI 295
I
Sbjct: 1481 EI 1482
>gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum]
gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum]
Length = 1623
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 21/218 (9%)
Query: 22 IQWSLVVAMEEAHQEEALISHLLQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNK 81
++W ++ + E Q + LI D +N+K+ +P + E+ LGY F N+
Sbjct: 1330 MEWIGILPLSE--QIQRLIETTQVDPVLNKKSTKTDVDFHMPQWREI--EQRLGYTFTNR 1385
Query: 82 NLLEEAFTDPS-CPERF-FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANV 139
L +A T S P R SYERLE++GD+VL+ L+T F +L PG +T LRS+ V
Sbjct: 1386 AFLLQALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHCGHLEPGQVTDLRSSLV 1445
Query: 140 NTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE--AILDYPLHSNGL------------ 185
N A + ++ G HK+L L+ I +F++ A +Y + L
Sbjct: 1446 NNNTFASLVVRCGFHKFLLMMNSNLQGHIDKFADYLASKNYVIDDEVLILLEEDEMNIAE 1505
Query: 186 -VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
VD PKVL DI E+ GA+++D N + VW+VF +++
Sbjct: 1506 YVDVPKVLGDIFEALAGAIYLDSNKDLKTVWRVFYKII 1543
>gi|223944141|gb|ACN26154.1| unknown [Zea mays]
gi|414870637|tpg|DAA49194.1| TPA: hypothetical protein ZEAMMB73_470563 [Zea mays]
Length = 206
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +LGY F +K+L+E A T S P R +YERLEY+GD VL L+++E F Y L
Sbjct: 52 EALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSREVFRTYRTLQ 111
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ 167
PG LTRLR+ANV+TEKLARVA+ GLH++LRH P L++Q
Sbjct: 112 PGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQ 151
>gi|156553056|ref|XP_001605287.1| PREDICTED: endoribonuclease Dcr-1 [Nasonia vitripennis]
Length = 1917
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 118/242 (48%), Gaps = 30/242 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY F N++ L +AFT S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1661 ERSIGYTFRNRSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1720
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------ 182
G+LT LRSA VN A +A++ G HKY RH P L I F I + HS
Sbjct: 1721 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNTVIDRFVR-IQEENGHSISEEYY 1779
Query: 183 ------------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--P 228
V+ PK L D+ ES GA+++D N S+D VW V+ E++K I
Sbjct: 1780 LIGEREFEEAEEAEDVEVPKALGDVFESLAGAIYLDSNMSLDAVWAVYFEIMKSEIEQFS 1839
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHN-RA 287
+ P+ EL E+ + KF K + + + + G+G++ K I N R
Sbjct: 1840 ANVPKSPIRELLELEPET---AKFGKPEKLADGRRVRVTVDVFGKGSF---KGIGRNYRI 1893
Query: 288 AK 289
AK
Sbjct: 1894 AK 1895
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
ERLE +GDS L +T F Y N+ G L+ LRS V+ L R LG K L
Sbjct: 1395 ERLETIGDSFLKYAITTYLFCTYNNIHEGKLSHLRSKQVSNLNLYR----LGRQKML 1447
>gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST]
gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST]
Length = 1672
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 25/193 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGYRF N+ L +AFT S SY++LE++GD+VL+ L++ + P++ P
Sbjct: 1427 EATLGYRFRNRTYLLQAFTHTSYTSNSLTGSYQQLEFLGDAVLDFLVSMYIYERNPSMSP 1486
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG---- 184
G LT LRSA VN LA V ++ LH+++ P+L + I +F + + H N
Sbjct: 1487 GQLTDLRSALVNNVNLACVLVRNELHRHILSQSPMLTDAIGKF---VAVHRCHRNQGSNW 1543
Query: 185 --------------LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
VD PKVL D++E+ IGA+++D + + W+V LL+ I+ T
Sbjct: 1544 VRLLTEESDTPMAEYVDVPKVLGDVLEALIGAIYLDSGNDLAATWEVCFRLLRDEIADFT 1603
Query: 231 LKT--HPVTELYE 241
KT V +LYE
Sbjct: 1604 RKTPIQVVRQLYE 1616
>gi|389747383|gb|EIM88562.1| hypothetical protein STEHIDRAFT_155914 [Stereum hirsutum FP-91666
SS1]
Length = 1722
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 19/193 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E ILG++F +LL +A T S SYERLE++GD++L+ ++ + + L PG
Sbjct: 1389 EAILGHKFERPHLLAQALTHGSIQGYEITSYERLEFIGDAILDFMVIRHVYDRDTKLSPG 1448
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL-----DYPL---- 180
++T L+ A V+ LA V I GL +YL P+L IR +++ + +Y L
Sbjct: 1449 AMTLLKGAMVSNSALAAVCIWAGLDEYLMFEAPVLAHNIRAYAQKLREKQKEEYALAQQE 1508
Query: 181 -HSNGL----VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETL 231
S G + PK L+D+VES IGA +I N S V KVF ++LKP I+ +TL
Sbjct: 1509 GRSPGQYWLETEPPKALSDVVESIIGATYISDNFSPVGVEKVFDKILKPFYDKHITLQTL 1568
Query: 232 KTHPVTELYEVCQ 244
HP L+E+ Q
Sbjct: 1569 SHHPTKILFELFQ 1581
>gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
Length = 1976
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 24/247 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY+F + + L +AFT S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1721 EKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSP 1780
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------ 182
G+LT LRSA VN A +A++ G HKY RH P L I F I + HS
Sbjct: 1781 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVR-IQEENGHSISEEYY 1839
Query: 183 ---------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
V+ PK L D+ ES GA+++D S+D VW V+ ++K I E T
Sbjct: 1840 LIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEI--EQFST 1897
Query: 234 H-PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
+ P + + E+ + KF K + + + + G+G++ IA AAK
Sbjct: 1898 NVPKSPIRELLELEPETAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAK 1957
Query: 290 DALNNIE 296
AL ++
Sbjct: 1958 CALKKLK 1964
>gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei]
Length = 1502
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 25/245 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY F +++ + +A T S + Y+RLE++GD+VL+ L+T F + + P
Sbjct: 1243 EKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFTDYSP 1302
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL-------- 180
G L+ LRS V + L R A K LH++L H P LE I +F + PL
Sbjct: 1303 GQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHLNPKLEASIDKFLSILHQDPLGEELNTED 1362
Query: 181 --HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI--SPETLKTHPV 236
V+ PK L D+VE+ IGAV++D N S+ + W+V + +L ++ S +T++ +P+
Sbjct: 1363 DVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVIERILGDLLNTSIQTIQLNPI 1422
Query: 237 TELYEVCQKNKLKVKFV---DLWKESTAFHIFIEDQLLGRGAYAPKKE---IAHNRAAKD 290
+L E K +V+FV D E + + + ++ G G + + +A + A
Sbjct: 1423 RQLLEEVPGEK-QVEFVKGEDDGSEKSTYVVKVK----GFGTFTASGKNYRVAKKKVAAI 1477
Query: 291 ALNNI 295
AL I
Sbjct: 1478 ALKEI 1482
>gi|312376926|gb|EFR23879.1| hypothetical protein AND_11908 [Anopheles darlingi]
Length = 994
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 125/274 (45%), Gaps = 49/274 (17%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F +++ L +A T S P R Y+RLE++GD++L+ L+T+ + P
Sbjct: 715 ERSLGYHFQDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSP 774
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----------SEAILD 177
G+LT LRSA VN A +A++ G H+Y H P L+E I F +E
Sbjct: 775 GALTDLRSALVNNTIFAALAVRHGFHRYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYY 834
Query: 178 YPLHSNGL----------------------------VDAPKVLADIVESTIGAVFIDCNS 209
P + + V+ PK L D+ ES GA+F+D
Sbjct: 835 LPDEDDDMLAADGGFGGGFGEIEGGQALMGSGEAEDVEVPKALGDVFESIAGAIFLDSGM 894
Query: 210 SIDIVWKVFKELLKPMIS--PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIE 267
S++ VWKV+++++ P I ++ P+ EL E+ KF K + + +
Sbjct: 895 SLNTVWKVYRKMMGPEIEKFSSSVPKSPIRELLEM---EPETAKFGKPEKLADGRRVRVT 951
Query: 268 DQLLGRGAY---APKKEIAHNRAAKDALNNIERL 298
++ G+G + IA AAK AL +++L
Sbjct: 952 VEVFGKGTFRGIGRNYRIAKCTAAKCALRQLKKL 985
>gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
Length = 1521
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 15/185 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LGYRF LL AF PS P ++ + Y+RLE++GDS+L++ F YP+
Sbjct: 1241 EEKLGYRFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMACVNHLFTKYPDKD 1300
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
P LT + A V+ + L +A+ L LH +L H +L+ QI ++E + + G ++
Sbjct: 1301 PQWLTEHKMAMVSNKFLGSLAVGLNLHVHLIHISNVLQGQITCYTEELQAMKMEMGGNLE 1360
Query: 188 A-------PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHP 235
A PK L DIVE+ +GA+F+D N + D++ FK ++ T+ HP
Sbjct: 1361 AWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVIDDFFKRFIQHYFEDMTVYDTFANKHP 1420
Query: 236 VTELY 240
+T L+
Sbjct: 1421 ITFLH 1425
>gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon
pisum]
Length = 1609
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 21/236 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1361 EQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKRQHSP 1420
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEE------QIREFSEAILDYPLHS 182
G+LT LRSA VN A +A++ G HKY +H P L + I+E + +D +
Sbjct: 1421 GALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVTIQEENGHTIDEEFYF 1480
Query: 183 NGL--------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH 234
G V+ PK L D+ ES GA+++D N S+D VWKV+ ++++ + + K
Sbjct: 1481 LGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSLDTVWKVYHKIMENEME-QFSKNV 1539
Query: 235 PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHN-RAAK 289
P + + E+ + KF K + + + ++ G+G + K I N R AK
Sbjct: 1540 PKSPIRELLELEPETAKFSKPEKLADGRRVRVVVEIFGKGEF---KGIGRNYRIAK 1592
>gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88]
Length = 1432
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 16/239 (6%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT S P + + Y+RLE++GDS+L+++ + + YP+ P
Sbjct: 1176 LGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQW 1235
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPLHSN 183
LT + A V+ + L V +KLGLHK+L + L QI ++E I D P
Sbjct: 1236 LTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAWT 1295
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D PK L D++E+ IGA+F+D N S ++V F+ LK + + + + +
Sbjct: 1296 TTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLK-----QYFEDMSIYDAFANK 1350
Query: 244 QKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNEK 302
+V+ VD + + + D+ + +G A A +A++ AL +E L + K
Sbjct: 1351 HPTAGEVQMVDSTETRIYAAVIVHDKFVAQGI-ASSVRYAKTKASEAALAKLEGLASFK 1408
>gi|350630584|gb|EHA18956.1| hypothetical protein ASPNIDRAFT_42773 [Aspergillus niger ATCC 1015]
Length = 1498
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 31/201 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE L YRF LL AFT PS P + Y+RLE++GDS+++++ ++ F +P+
Sbjct: 1204 EEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRD 1263
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV- 186
P LT + A V+ + L +A+KLGLH +L++ L+ QI +++E I S G V
Sbjct: 1264 PQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAVD 1323
Query: 187 ------DAPKV----------------LADIVESTIGAVFIDCNSSIDIVWKVFKELLKP 224
D PKV L D+VE+ +GAVF+D + + +++ + F++ +KP
Sbjct: 1324 YWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKP 1383
Query: 225 MISPETL-----KTHPVTELY 240
+ HP T L+
Sbjct: 1384 FFEDMAIYDTFANKHPTTFLH 1404
>gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis]
gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis]
Length = 2179
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 122/253 (48%), Gaps = 34/253 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE + YRF +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + + P
Sbjct: 1918 EESIKYRFRDRSYLLQALTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRHHSP 1977
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG---- 184
G+LT LRSA VN A +A++ HKY RH P L E + F +NG
Sbjct: 1978 GALTDLRSALVNNTIFASLAVRHDFHKYFRHLCPSLNEVVDRFVRF-----QQANGHAIS 2032
Query: 185 ---------------LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
V+ PK L D+ ES GA+F+D S+D VW+V+ ++K I
Sbjct: 2033 EEFYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWRVYYRIMKNEIELF 2092
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ P+ EL+E+ + +F K + + + ++ G+G + IA
Sbjct: 2093 STNVPKSPIRELFELEPET---AQFGKPEKLADGRRVRVSVEVFGKGIFNGIGRNYRIAK 2149
Query: 285 NRAAKDALNNIER 297
AAK AL ++R
Sbjct: 2150 CTAAKCALKQLKR 2162
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIK 150
ERLE +GDS L +T + +Y N+ G L+ LRS V+ L R+ K
Sbjct: 1658 ERLETIGDSFLKYAITTYLYCIYENVHEGKLSHLRSKQVSNFNLYRLGRK 1707
>gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger]
Length = 1531
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 31/201 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE L YRF LL AFT PS P + Y+RLE++GDS+++++ ++ F +P+
Sbjct: 1237 EEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRD 1296
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV- 186
P LT + A V+ + L +A+KLGLH +L++ L+ QI +++E I S G V
Sbjct: 1297 PQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAVD 1356
Query: 187 ------DAPKV----------------LADIVESTIGAVFIDCNSSIDIVWKVFKELLKP 224
D PKV L D+VE+ +GAVF+D + + +++ + F++ +KP
Sbjct: 1357 YWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKP 1416
Query: 225 MISPETL-----KTHPVTELY 240
+ HP T L+
Sbjct: 1417 FFEDMAIYDTFANKHPTTFLH 1437
>gi|402595090|gb|EJW89016.1| type III restriction enzyme [Wuchereria bancrofti]
Length = 1410
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 121/257 (47%), Gaps = 26/257 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GYRFN++ L +AFT S + + Y+RLE++GD+VL+ ++T+ F + P
Sbjct: 1148 EDCIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHSSHYSP 1207
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HK+ P L I +F + L S
Sbjct: 1208 GVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSSANFNEE 1267
Query: 186 -----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
++ PK + DI ES GA+++D S++IVW+VF L+K I
Sbjct: 1268 MYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNIVWRVFYNLMKETID- 1326
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWK--ESTAFHIFIEDQLLGR-GAYAPKKEIAHN 285
E P + + E+ + + +F L + E+ + ++ Q R IA
Sbjct: 1327 ECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYRIAKC 1386
Query: 286 RAAKDALNNIERLLNEK 302
AAK AL + L EK
Sbjct: 1387 TAAKRALRYLRSLKKEK 1403
>gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus]
Length = 1816
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 30/212 (14%)
Query: 61 SLPNANNLDEEEILGY---------RFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDS 109
S+PNA ++ +++++GY RF ++ L +AFT S + Y+RLE++GD+
Sbjct: 1547 SVPNAEDVLQQQLVGYDGFEKTINYRFKDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDA 1606
Query: 110 VLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIR 169
+L+ L+T+ + + NL PG+LT LRSA VN A +A+K HKY + + + I
Sbjct: 1607 LLDYLITRHLYDHHTNLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVID 1666
Query: 170 EF-------SEAI-LDYPLHSNGL---------VDAPKVLADIVESTIGAVFIDCNSSID 212
F +EA+ +D L + + ++ PK L DI ES GA+++D S++
Sbjct: 1667 NFVTFVDAKNEALGMDSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLN 1726
Query: 213 IVWKVFKELLKPMIS--PETLKTHPVTELYEV 242
VWKV+ ++K I L PV EL E+
Sbjct: 1727 AVWKVYYPMMKQQIEQYASDLPISPVRELLEM 1758
>gi|391341486|ref|XP_003745061.1| PREDICTED: endoribonuclease Dicer [Metaseiulus occidentalis]
Length = 1863
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 128/258 (49%), Gaps = 44/258 (17%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNL-- 126
EE +GY+F NK L +AFT S + Y+RLE++GD+VL+ L+T+ +LY +
Sbjct: 1575 EERIGYKFKNKGFLLQAFTHASYHYNTLTDCYQRLEFLGDAVLDYLITR---YLYEDPVK 1631
Query: 127 --PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
PG+LT LRSA VN A +A+K HKY + P L + I F + H +G
Sbjct: 1632 QHSPGALTDLRSALVNNTFFAALAVKYEFHKYFLNLSPRLFKLIHRF----VSTKKHLSG 1687
Query: 185 ------------------LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
++ PK L DI ES GA+++D S+D W V+ ++KP I
Sbjct: 1688 KQYFEKYYLGEDECEEAEEIEVPKALGDIFESVAGAIYLDSGMSLDTTWNVYLAMMKPEI 1747
Query: 227 SPETLKTH----PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APK 279
E H P+ EL E+ + K + +L + I ++ ++ G+G++
Sbjct: 1748 --EYFSKHVPKSPIRELLEL-EPQTAKFEKAEL---TLNGKIRVKVEVFGKGSFIGIGRN 1801
Query: 280 KEIAHNRAAKDALNNIER 297
K IA AAK AL ++E+
Sbjct: 1802 KRIAKCTAAKRALRSVEQ 1819
>gi|380025724|ref|XP_003696618.1| PREDICTED: endoribonuclease Dcr-1-like [Apis florea]
Length = 1966
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 24/247 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY+F++ + L +AFT S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1700 EKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDARQHSP 1759
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------ 182
G+LT LRSA VN A +A++ G HKY RH P L I F I + HS
Sbjct: 1760 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVR-IQEENGHSISEEYY 1818
Query: 183 ---------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
V+ PK L D+ ES GA+++D S+D VW V+ ++K I E T
Sbjct: 1819 LIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKNEI--EQFST 1876
Query: 234 H-PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
+ P + + E+ + KF K + + + + G+G++ IA AAK
Sbjct: 1877 NVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAK 1936
Query: 290 DALNNIE 296
AL I+
Sbjct: 1937 CALKKIK 1943
>gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1055
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 10/163 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+E LGY+F LL AFT S P + + Y+RLE++GDS+L++ + + YP+
Sbjct: 867 KEKLGYQFKYPKLLRSAFTHSSYPSAWAAVPCYQRLEFLGDSLLDMACVEHLYHRYPDKD 926
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPL 180
P LT + A V+ + L VA+KLGLH +LRH ++ QI + E I D P
Sbjct: 927 PQWLTEHKMAMVSNKFLGCVAVKLGLHPHLRHFSAPIQSQIATYVEEIEAAELESGDSPD 986
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK 223
D PK L D+VE+ IGA+FID + ++V F+ LK
Sbjct: 987 AWTSTSDPPKCLPDMVEAYIGAIFIDSDFRYEVVEDFFERFLK 1029
>gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
Length = 1760
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 19/191 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE + Y FN+K + +AFT PS + Y+RLE++GD+VL+ L+T F P
Sbjct: 1513 EETVQYSFNDKAYMLQAFTHPSYHYNTITDCYQRLEFLGDAVLDYLITNHLFKDPQQHSP 1572
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF---------------SE 173
G+LT LRSA VN A +A+K HKYL+ P L I F
Sbjct: 1573 GALTDLRSALVNNTIFASLAVKYDYHKYLKFVSPELFNIISNFVQFQQEQGEEQGMDSQT 1632
Query: 174 AILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
I D + ++ PK L D+ ES GA+++D S++ VW+V+ ++KP+I + K
Sbjct: 1633 YINDEGEEESEDIEVPKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLIDKFSAKV 1692
Query: 234 --HPVTELYEV 242
PV EL E+
Sbjct: 1693 PRSPVRELLEM 1703
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 97 FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
FF+ ERLE +GDS L +T + Y + G L+ +RS V+ L R+ + GL
Sbjct: 1245 FFNLERLETIGDSFLKHAITTFLYCTYSRVHEGKLSYMRSRQVSNLNLYRLGKRKGL 1301
>gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1359
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 16/239 (6%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT S P + + Y+RLE++GDS+L+++ + + YP+ P
Sbjct: 1103 LGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQW 1162
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPLHSN 183
LT + A V+ + L V +KLGLHK+L + L QI ++E I D P
Sbjct: 1163 LTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAWT 1222
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D PK L D++E+ IGA+F+D N S ++V F+ LK + + + + +
Sbjct: 1223 TTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLK-----QYFEDMSIYDAFANK 1277
Query: 244 QKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNEK 302
+V+ VD + + + D+ + +G A A +A+ AL +E L + K
Sbjct: 1278 HPTAGEVQMVDSTEPRIYAAVIVHDKFVAQGI-ASSVRYAKTKASDAALAKLEGLASFK 1335
>gi|357619534|gb|EHJ72068.1| putative dicer 1 [Danaus plexippus]
Length = 754
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 20/244 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E L YRF +++LL A T SC + Y+RLE++GD++L+ L+T+ + P
Sbjct: 506 ENTLQYRFRDRSLLLTALTHASCHNNTLTDCYQRLEFLGDAILDYLITRHLYEDPRRHSP 565
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEE--------------QIREFSEA 174
G+LT LRSA VN A +A + G HKY RH P L E I E
Sbjct: 566 GALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLTKYVKIQEENGHSISEEHYL 625
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH 234
I + + V+ PK L D+ ES GA+F+D S+ VW+ LL+ + +
Sbjct: 626 IQEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLAAVWRAVGGLLRAELDAFSAAA- 684
Query: 235 PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKDA 291
P + + E+ + KF + + + + ++ GRG++ IA AA+ A
Sbjct: 685 PKSPVRELLEAEPDTAKFGKPERLADGRRVRVCVEVFGRGSFKGVGRNYRIAKGTAARCA 744
Query: 292 LNNI 295
L ++
Sbjct: 745 LRHL 748
>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
Length = 233
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E+I+ Y F NK L++ A T PS E SYERLE++GDS+L ++ + F +P +
Sbjct: 11 EQIIEYTFENKRLIQAAITHPSAVEGLPVSASYERLEFLGDSILGAIVATDMFEKFPGMD 70
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G+LTR++ + V+ + L+ VA +LG+ + + +R F+ A
Sbjct: 71 EGALTRMKISLVSGKTLSMVAEELGIGECIIFGDSEKGTGVRGFTSA------------- 117
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQ 244
L ++ ES +GA++++ + K + L P + PE L HP+ + L EVCQ
Sbjct: 118 ----LENVYESLVGALYLEAG--YEPTVKFIRRTLTPYMVPE-LAKHPISPKSRLQEVCQ 170
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
K +L E+ H +F++ +L+GRG + KKE + + AA AL+ ++
Sbjct: 171 KRFHIAPVYELEDETGPAHAPQFTSAVFVDGELMGRGTGSSKKE-SQSIAALSALDKLD 228
>gi|380026731|ref|XP_003697097.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Apis
florea]
Length = 1362
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 20/191 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY+F N+ L +AFT PS + Y+RLE++GD++L+ L+T + NL P
Sbjct: 1163 ETKLGYKFKNRGYLLQAFTHPSYSANHMTECYQRLEFLGDAILDFLITSYIYENCGNLNP 1222
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----------SEAILD 177
GSLT LRSA VN A + ++ GLH L P L + I F ++ +L
Sbjct: 1223 GSLTDLRSALVNNITFACLTVRHGLHIALLCYSPKLNDIIERFVKFQEERNHIVNDELLW 1282
Query: 178 YPLHSNGL-----VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PET 230
L + VD PKVL DI ES IGA+++D N ++ +VW++ ++ I +
Sbjct: 1283 ILLEESECNIAEHVDVPKVLGDIFESIIGAIYLDSNKNLMVVWEIIYSIMHKEIDEFSKN 1342
Query: 231 LKTHPVTELYE 241
+ P+ LYE
Sbjct: 1343 IPKQPIRILYE 1353
>gi|390332898|ref|XP_790894.2| PREDICTED: endoribonuclease Dicer-like [Strongylocentrotus
purpuratus]
Length = 1815
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 112/212 (52%), Gaps = 30/212 (14%)
Query: 61 SLPNANNLDEEEILGY---------RFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDS 109
S+PNA ++ + +++GY RF ++ L +AFT S + Y+RLE++GD+
Sbjct: 1546 SVPNAEDVLQHQLVGYDGFEKTINYRFRDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDA 1605
Query: 110 VLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIR 169
+L+ L+T+ + + NL PG+LT LRSA VN A +A+K HKY + + + I
Sbjct: 1606 LLDYLITRHLYDHHTNLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVID 1665
Query: 170 EF-------SEAI-LDYPLHSNGL---------VDAPKVLADIVESTIGAVFIDCNSSID 212
F +EA+ +D L + + ++ PK L DI ES GA+++D S++
Sbjct: 1666 NFVTFVDAKNEALGMDSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLN 1725
Query: 213 IVWKVFKELLKPMIS--PETLKTHPVTELYEV 242
VWKV+ ++K I L PV EL E+
Sbjct: 1726 AVWKVYYPMMKQQIEQYASDLPISPVRELLEM 1757
>gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03]
Length = 1469
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 25/240 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGYRF LL AFT S P + Y+RLE++GDS+L+++ + + YP+ P
Sbjct: 1208 LGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDPQW 1267
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPLHSN 183
LT + A V+ + L VA+KLGLH++L + L QI ++E I +D P
Sbjct: 1268 LTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESIDSPDFWT 1327
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
D PK L D++E+ IGA+F+D N S ++V F++ LK ++ HP
Sbjct: 1328 TTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYDTFANKHPTAS 1387
Query: 239 LYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+V VD + + I D+ + G A A +A+++AL+ ++ L
Sbjct: 1388 ---------GEVDSVDAAEHRVLAAVIIHDEFVAEGI-ASSAGYAKVKASENALSKLDGL 1437
>gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori]
gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori]
Length = 1677
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 20/207 (9%)
Query: 56 ESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNL 113
E++ + L N + D E+IL Y F + L A + S SYERLE++GD++++
Sbjct: 1412 EADIDFLLNNSRTDVEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYERLEFLGDAIIDF 1471
Query: 114 LLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN-KPLLEEQIREFS 172
L+T F L PG +T LRSA VN A +KLGLHKYL P LE+ I +F
Sbjct: 1472 LVTSHIFENCRELKPGEMTDLRSALVNNVTFAAYTVKLGLHKYLCSELNPSLEKAIMKFV 1531
Query: 173 E---------------AILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKV 217
E I + VD PKVL+DI E+ +GAV++D +++ VW V
Sbjct: 1532 EHQIERNHEIEFDVLLLISEVDCQVAEYVDVPKVLSDIFEALVGAVYLDSGGNLETVWSV 1591
Query: 218 FKELLKPMIS--PETLKTHPVTELYEV 242
+++ I + + PV LYE+
Sbjct: 1592 LYKIMHVEIDSFSKRIPKQPVKILYEM 1618
>gi|340727238|ref|XP_003401955.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dcr-1-like [Bombus
terrestris]
Length = 1957
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 24/247 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY F++ + L +AFT S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1706 EKSIGYEFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDARQHSP 1765
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------ 182
G+LT LRSA VN A +A++ G HKY RH P L I F I + HS
Sbjct: 1766 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVR-IQEENGHSISEEYY 1824
Query: 183 ---------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
V+ PK L D+ ES GA+++D S+D VW V+ ++K I E T
Sbjct: 1825 LIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYAIMKNEI--EQFST 1882
Query: 234 H-PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
+ P + + E+ + KF K + + + + G+G++ IA AAK
Sbjct: 1883 NVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAK 1942
Query: 290 DALNNIE 296
AL E
Sbjct: 1943 CALKKAE 1949
>gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18]
Length = 1423
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 25/240 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGYRF LL AFT S P + Y+RLE++GDS+L+++ + + YP+ P
Sbjct: 1147 LGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDPQW 1206
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------LDYPLHSN 183
LT + A V+ + L VA+KLGLH++L + L QI ++E I +D P
Sbjct: 1207 LTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESIDSPDFWT 1266
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
D PK L D++E+ IGA+F+D N S ++V F++ LK ++ HP
Sbjct: 1267 TTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYDTFANKHPTAS 1326
Query: 239 LYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+V VD + + I D+ + G A A +A+++AL ++ L
Sbjct: 1327 ---------GEVDSVDAAEHRVLAAVIIHDEFVAEGI-ASSAGYAKVKASENALAKLDGL 1376
>gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
Length = 506
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 99/200 (49%), Gaps = 22/200 (11%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQ 119
+P AN D E +GY+FNN+ L +AFT PS + Y+RLE++GD++L+ L+T
Sbjct: 248 MPWAN--DMETKIGYKFNNRAFLLQAFTHPSYTPNVITECYQRLEFLGDAILDFLITCYI 305
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
+ NL PG LT LRSA VN A +A++ GL L P L E I F + +
Sbjct: 306 YETCGNLSPGHLTDLRSALVNNITFACLAVRYGLDTALLSYAPKLHEAIDRFVKFQQERN 365
Query: 180 LHSNG----------------LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK 223
N VD PKVL D+ ES IGA+++D ++ VW++
Sbjct: 366 YVVNDELLWVLLEEEECNLAEYVDVPKVLGDLFESLIGAIYLDSGKNLTKVWEIVYSFTH 425
Query: 224 PMISPETLKT--HPVTELYE 241
I + T HPV +YE
Sbjct: 426 KEIDKFSKNTPKHPVRLIYE 445
>gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188]
Length = 1509
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 25/249 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY+F LL AFT S P R Y+RLE++GDS+L+++ + + YP+ P
Sbjct: 1229 LGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQW 1288
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-- 188
LT + A V+ + L VA+KLGLH++L + L QI + E I SN DA
Sbjct: 1289 LTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAWT 1348
Query: 189 -----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
PK L D++E+ IGA+F+D N ++V F++ LK ++ HP T
Sbjct: 1349 TTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPTTY 1408
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ C LK V+ VD + + + D+ + G A A +A++
Sbjct: 1409 FHNRLTIDFGCTSYCLKAGEVQMVDGTEPRVYAAVIVHDEFVAEGI-ASSVRYAKIKASE 1467
Query: 290 DALNNIERL 298
AL +E L
Sbjct: 1468 AALAKLEGL 1476
>gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3]
Length = 1522
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 25/249 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY+F LL AFT S P R Y+RLE++GDS+L+++ + + YP+ P
Sbjct: 1242 LGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQW 1301
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-- 188
LT + A V+ + L VA+KLGLH++L + L QI + E I SN DA
Sbjct: 1302 LTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAWT 1361
Query: 189 -----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
PK L D++E+ IGA+F+D N ++V F++ LK ++ HP T
Sbjct: 1362 TTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPTTY 1421
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ C LK V+ VD + + + D+ + G A A +A++
Sbjct: 1422 FHNRLTIDFGCTSYCLKAGEVQMVDGTEPRVYAAVIVHDEFVAEGI-ASSVRYAKIKASE 1480
Query: 290 DALNNIERL 298
AL +E L
Sbjct: 1481 AALAKLEGL 1489
>gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
Length = 1522
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 25/249 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY+F LL AFT S P R Y+RLE++GDS+L+++ + + YP+ P
Sbjct: 1242 LGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQW 1301
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-- 188
LT + A V+ + L VA+KLGLH++L + L QI + E I SN DA
Sbjct: 1302 LTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAWT 1361
Query: 189 -----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
PK L D++E+ IGA+F+D N ++V F++ LK ++ HP T
Sbjct: 1362 TTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPTTY 1421
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ C LK V+ VD + + + D+ + G A A +A++
Sbjct: 1422 FHNRLTIDFGCTSYCLKAGEVQMVDGTEPRVYAAVIVHDEFVAEGI-ASSVRYAKIKASE 1480
Query: 290 DALNNIERL 298
AL +E L
Sbjct: 1481 AALAKLEGL 1489
>gi|383856609|ref|XP_003703800.1| PREDICTED: endoribonuclease Dicer-like [Megachile rotundata]
Length = 1441
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 22/207 (10%)
Query: 55 DESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLN 112
DE+ + +P A++++ + LGYRF N+ LL +AFT PS + Y+RLE++GD++L+
Sbjct: 1228 DENINRFMPWASDIETK--LGYRFENRALLLQAFTHPSYTANNVTECYQRLEFLGDAILD 1285
Query: 113 LLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF- 171
L+T + NL PG+LT LRSA VN A ++++ GLH L P L + I F
Sbjct: 1286 FLITCYIYENCGNLTPGALTDLRSALVNNITFACLSVRYGLHTALLAYAPNLNDVIHRFV 1345
Query: 172 ----------SEAILDYPLHSNGL-----VDAPKVLADIVESTIGAVFIDCNSSIDIVWK 216
++ +L L + VD PKVL D+ ES IGA+++D ++ W+
Sbjct: 1346 KFQEERDHIVNDELLWILLEEDECNMAEHVDVPKVLGDLYESVIGAIYLDSGKNLRKTWE 1405
Query: 217 VFKELLKPMIS--PETLKTHPVTELYE 241
+ + I + + PV LYE
Sbjct: 1406 IIYSFMHKEIDEFSKNIPKQPVRVLYE 1432
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIK 150
F ERLE +GDS L +++ + ++PN GSLT L+ + L IK
Sbjct: 1030 FDLERLETLGDSYLKFIVSLYLYTIFPNYNEGSLTVLKGKMIGNRNLYYCGIK 1082
>gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica]
Length = 2271
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 118/238 (49%), Gaps = 25/238 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E + Y+F +++ L ++ T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2019 ERRIRYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSP 2078
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------ 182
G+LT LRSA VN A +A++ G HKY RH P L E + F I + H+
Sbjct: 2079 GALTDLRSALVNNTIFASLAVRYGFHKYFRHLSPGLNEVVDRFVR-IQEENGHTISEEYY 2137
Query: 183 ---------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
V+ PK L D+ ES GA+F+D S+D VW+V+ ++K I E T
Sbjct: 2138 LIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWRVYYRMMKSEI--EQFST 2195
Query: 234 H-PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHN-RAAK 289
+ P + + E+ + KF K + + + ++ G+G + K I N R AK
Sbjct: 2196 NVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTF---KGIGRNYRIAK 2250
>gi|411170363|gb|AFW16070.1| dicer-1 [Nilaparvata lugens]
Length = 2239
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 114/248 (45%), Gaps = 24/248 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E L YRFN+++ L +A T S + Y+RLE++GD+ L+ L+T+ + P
Sbjct: 1983 ERSLRYRFNDRSYLLQAMTHASYHTNRLTDCYQRLEFLGDAALDYLITRHLYEDKRQHCP 2042
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-------------- 174
G LT LRSA VN A +A++ G HKY H P L E I F
Sbjct: 2043 GDLTDLRSALVNNTIFASLAVRHGFHKYFCHLSPGLSEVIERFVRIQEENGHAISEECYL 2102
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLK 232
I + V+ PK L D+ ES GA+F+D S+D VW V+ ++K I +
Sbjct: 2103 IGEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWMVYYHMMKNEIDQFSTNVP 2162
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
P+ EL E+ KF K + + + ++ G+G Y IA AAK
Sbjct: 2163 KSPIRELLEL---EPETAKFGKPEKLADGRRVRVNVEVFGKGTYKGIGRNYRIAKCTAAK 2219
Query: 290 DALNNIER 297
AL +++
Sbjct: 2220 CALKQLKK 2227
Score = 37.0 bits (84), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHK 155
ERLE +GDS L +T + +Y ++ G L+ LRS V+ L R LG HK
Sbjct: 1736 ERLETIGDSFLKFAITTYLYCVYESVHEGKLSHLRSKQVSNLNLYR----LGKHK 1786
>gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
Length = 1572
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 17/188 (9%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
Y F LL AF PS P E +Y+RLE++GDS+L++ ++ YP+ P LT
Sbjct: 1290 YHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPDKDPQWLT 1349
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD----- 187
++ V+ + L V +KLG H Y++ N +L QIR++ + S G VD
Sbjct: 1350 EHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAERESGGAVDYWVTI 1409
Query: 188 --APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-------KTHPVTE 238
PK LAD++E+ A+F+D +V F LKP TL HP T
Sbjct: 1410 SEPPKCLADVIEAYTAALFVDAEFDFSVVQDFFNLHLKPFFEDMTLDAYENFASNHPTTR 1469
Query: 239 LYEVCQKN 246
L + N
Sbjct: 1470 LSRILSIN 1477
>gi|345571082|gb|EGX53897.1| hypothetical protein AOL_s00004g556 [Arthrobotrys oligospora ATCC
24927]
Length = 1587
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 22/249 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +GY+F LL AFT PS P E+ YERLE++GD+++++ ++ + +P
Sbjct: 1302 ERDMGYKFKYPRLLRSAFTHPSFPTMWEKIPCYERLEFLGDALIDMACVEDLWERFPGKD 1361
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
P LT + + +N +++KL H +LR + ++E+ + I + + SN VD
Sbjct: 1362 PQWLTEHKMSMINNRFQGALSVKLKFHTHLRAMGAHINSAVQEYVQLIEEARIASNDSVD 1421
Query: 188 -------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHP 235
PKVL DI+E+ +GA+F+D + D+V F+ ++P + ++ HP
Sbjct: 1422 YWIDAKQPPKVLPDILEAYVGAIFVDSGFNYDVVTSFFRTHVRPFFTDMSIFDSFAGNHP 1481
Query: 236 VTELYE-----VCQKNKLKVK-FVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
VT L C ++ K + D K + D++L G + KK N AAK
Sbjct: 1482 VTHLTTRMTELGCSDFRIFSKEYKDRDKSYVLSVVIFHDKILAEGKASSKKNSRTN-AAK 1540
Query: 290 DALNNIERL 298
+L + +
Sbjct: 1541 HSLEKLATM 1549
>gi|452839019|gb|EME40959.1| hypothetical protein DOTSEDRAFT_56023 [Dothistroma septosporum NZE10]
Length = 1549
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 19/186 (10%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
YRF LL AF PS P E+ +Y+RLE++GD++L++ F+ YP+ P LT
Sbjct: 1260 YRFQYPRLLYSAFVHPSLPFMYEKVPNYQRLEFLGDALLDMASISYLFYKYPDKDPQWLT 1319
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL-------DYPLHSNGL 185
+ A V+ + L + + +G HK+LRH+ LE Q+RE++ +L D + +
Sbjct: 1320 EHKMAMVSNKFLGALCVNIGFHKHLRHHHAKLEHQVREYAIELLEAKRVAGDSRDYWTTV 1379
Query: 186 VDAPKVLADIVESTIGAVFIDCNSS-------IDIVWKVFKELLKPMISPETLKTHPVTE 238
D PK L DI+ES +GA+FID + + DI + F E +K I HP T
Sbjct: 1380 SDPPKCLPDIIESYVGALFIDSDFNYAEVQRFFDIHIRWFFEDMK--IYDTFANNHPCTH 1437
Query: 239 LYEVCQ 244
L+ + Q
Sbjct: 1438 LHNMLQ 1443
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+YER E++GD+ L T F L PN R + + L + A+ L L++Y+R
Sbjct: 1076 NYERFEFIGDTFLKTATTLSTFILNPNENEFEFHVRRMLMLCNKNLFQTAMGLKLYEYIR 1135
Query: 159 H------------NKPLLEEQIREFSEAIL-----DYPLHSNGLVDAPKVLADIVESTIG 201
K L + + E ++ D+PL K +AD+ E+ IG
Sbjct: 1136 SLPFNRRLWYPEGMKLLAGTGVVKGEEKVMWHQPRDHPL-------GEKTIADVCEALIG 1188
Query: 202 AVFI--DC 207
A FI DC
Sbjct: 1189 AAFIAHDC 1196
>gi|388330447|gb|AFK29469.1| Dicer1 [Locusta migratoria]
Length = 2324
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 24/242 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y+F +++ L ++ T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 2072 EQKIQYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSP 2131
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------ 182
G+LT LRSA VN A +A++ G HK+ RH P L E + F I + H+
Sbjct: 2132 GALTDLRSALVNNTIFASLAVRYGFHKFFRHLSPGLNEVVDRFVR-IQEENGHTISEEYY 2190
Query: 183 ---------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
V+ PK L D+ ES GA+F+D N S+D VW+V+ ++K I E T
Sbjct: 2191 LIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWRVYYRMMKLEI--EQFST 2248
Query: 234 H-PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAK 289
+ P + + E+ + KF K + + + ++ G+G + IA AAK
Sbjct: 2249 NVPKSPIRELLELEPETAKFGKPEKLADGRRVRVSVEVFGKGIFKGIGRNYRIAKCTAAK 2308
Query: 290 DA 291
A
Sbjct: 2309 CA 2310
>gi|443725259|gb|ELU12939.1| hypothetical protein CAPTEDRAFT_223153 [Capitella teleta]
Length = 1651
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 27/251 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE + Y+F +++ L +AFT S + Y+RLE++GD++L+ ++T+ F P
Sbjct: 1388 EEKICYKFRDRSYLLQAFTHASYHYNTVTDCYQRLEFLGDAILDYVITRHLFEDSEKHSP 1447
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN----- 183
G LT LRSA VN A +A+K HKY R P L I +F D N
Sbjct: 1448 GVLTDLRSALVNNNIFAALAVKWNFHKYFRAISPQLFYVIDKFVTWQKDRNDEINLDEEF 1507
Query: 184 -----------GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP--ET 230
++ PK L DI ES GA+++D S+D VW+V+ ++KP I E
Sbjct: 1508 GELEEDGEGTEEDIEIPKALGDIFESVAGAIYLDSGMSLDTVWQVYYRMMKPQIDAFTER 1567
Query: 231 LKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRA 287
+ PV EL E+ + KF + + + I + ++G+G + IA + A
Sbjct: 1568 IPKSPVRELLEMEPET---AKF-EKPERTMDGKIRVTVNVVGKGNFRGIGRNYRIAKSAA 1623
Query: 288 AKDALNNIERL 298
AK AL +I+ +
Sbjct: 1624 AKRALKHIKSI 1634
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 97 FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
FF+ ERLE +GDS L +T + YP + G L+ LRS V+ L ++ K GL
Sbjct: 1146 FFNLERLETIGDSFLKFAITVYLYCEYPGIHEGKLSYLRSKQVSNYNLYKLGKKKGL 1202
>gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818]
Length = 1519
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 142/294 (48%), Gaps = 44/294 (14%)
Query: 47 LFVN------EKAGDESESESLPN-------ANNLDE----EEILGYRFNNKNLLEEAFT 89
+FVN EK D S SLPN A+ +D + LGY F LL AF
Sbjct: 1198 VFVNSDDHRVEKWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFM 1257
Query: 90 DPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLAR 146
PS P ++ + Y+RLE++GDS+L+++ F YP+ P LT + A V+ + L
Sbjct: 1258 HPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGS 1317
Query: 147 VAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-------PKVLADIVEST 199
+A+ L LH +L H L+ QI ++E + + G ++A PK L DIVE+
Sbjct: 1318 LAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAY 1377
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTELYEV------CQKNKL 248
+GA+F+D N + D+V + F++ ++ ++ HP+T L+ C L
Sbjct: 1378 LGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFANKHPITFLHTRLAVDFGCTFYAL 1437
Query: 249 K---VKFVDLWKESTAFHIFIEDQLLGRG-AYAPKKEIAHNRAAKDALNNIERL 298
K + VD + + D ++ G A +P+ A +A+++AL +E +
Sbjct: 1438 KADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRH--AKLKASQNALQVLEEM 1489
>gi|425626934|gb|AFX89025.1| DCR2 [Mayetiola destructor]
Length = 1646
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 33/220 (15%)
Query: 35 QEEALISHLLQDLFVNEKA----GDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTD 90
+E I+ LL + F N + D LPN L E +GY+F ++ L +A T
Sbjct: 1360 RENVDITKLLSNQFHNPRVRTNIKDIEIDSFLPNHTEL--ETNIGYKFKDRAYLLQALTH 1417
Query: 91 PSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVA 148
P+ P + Y++LE++GD+VL+ L+T + P + PG LT LRSA VN LA +
Sbjct: 1418 PTYPTNRVTGCYQQLEFLGDAVLDFLITSYIYERCPEMDPGKLTDLRSALVNNVTLACIC 1477
Query: 149 IKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG---------------------LVD 187
++ +H Y+ L E I +F +DY + N V+
Sbjct: 1478 VRYNIHLYILSQNAALTEFISQF----VDYQIAHNHEVTDHVDLLMEEKDVECKMAEYVE 1533
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS 227
PK L D++E+ IGA+F+D +++++ WKV L++ I+
Sbjct: 1534 VPKTLGDVIEALIGAIFLDSGNNLEVTWKVIYGLMQKEIN 1573
>gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97]
Length = 1519
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 142/294 (48%), Gaps = 44/294 (14%)
Query: 47 LFVN------EKAGDESESESLPN-------ANNLDE----EEILGYRFNNKNLLEEAFT 89
+FVN EK D S SLPN A+ +D + LGY F LL AF
Sbjct: 1198 VFVNSDDHRVEKWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFM 1257
Query: 90 DPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLAR 146
PS P ++ + Y+RLE++GDS+L+++ F YP+ P LT + A V+ + L
Sbjct: 1258 HPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGS 1317
Query: 147 VAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-------PKVLADIVEST 199
+A+ L LH +L H L+ QI ++E + + G ++A PK L DIVE+
Sbjct: 1318 LAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAY 1377
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTELYEV------CQKNKL 248
+GA+F+D N + D+V + F++ ++ ++ HP+T L+ C L
Sbjct: 1378 LGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFANKHPITFLHTRLAVDFGCTFYAL 1437
Query: 249 K---VKFVDLWKESTAFHIFIEDQLLGRG-AYAPKKEIAHNRAAKDALNNIERL 298
K + VD + + D ++ G A +P+ A +A+++AL +E +
Sbjct: 1438 KADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRH--AKLKASQNALQVLEEM 1489
>gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis]
Length = 1162
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 24/180 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS----YERLEYVGDSVLNLLLTKEQFFLYPNL 126
E LGY F ++++L +A T S P + S YE+LE++GD++L+ L+T+ +P L
Sbjct: 939 EASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPRL 998
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--------------- 171
PG++T LRSA VN LA + I+ HK++R L + +R F
Sbjct: 999 SPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEKETRPD 1058
Query: 172 ---SEAILDYPLHSNG--LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
S+ +L G ++ PKVL D+ E+ +GA+++DC ++ W V LL P+I
Sbjct: 1059 QVYSKLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPLLTPII 1118
>gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
Length = 1856
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 26/257 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GYRF+++ L +AFT S + + Y+RLE++GD+VL+ ++T+ F + P
Sbjct: 1594 EDCIGYRFHDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHSAHYSP 1653
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HK+ P L I +F + L S
Sbjct: 1654 GVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSSANFNEE 1713
Query: 186 -----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
++ PK + DI ES GA+++D S++ VW+VF L+K I+
Sbjct: 1714 MYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNTVWRVFYNLMKETIN- 1772
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWK--ESTAFHIFIEDQLLGR-GAYAPKKEIAHN 285
E P + + E+ + + +F L + E+ + ++ Q R IA
Sbjct: 1773 ECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYRIAKC 1832
Query: 286 RAAKDALNNIERLLNEK 302
AAK AL + L EK
Sbjct: 1833 TAAKRALRYLRSLKKEK 1849
>gi|358332040|dbj|GAA50766.1| dicer-like protein 1 [Clonorchis sinensis]
Length = 774
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 12/199 (6%)
Query: 35 QEEALISHLLQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCP 94
Q+ +++ L L + GDE+ L ++ + LGY F N+ LL EA T S
Sbjct: 542 QDAVCLTNQLSKLTIGSARGDEATKAELDAGISILQGR-LGYVFKNQALLHEARTHSSYS 600
Query: 95 --ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
+ Y+RLE++GD+VL +++ + F +P+ PG LT RS VN LARV + L
Sbjct: 601 SLKPTVCYQRLEFLGDAVLGYVVSNDLFKRFPDYDPGMLTNHRSLIVNNLVLARVLVDLK 660
Query: 153 LHKYLRHNKPLLEEQIREF---------SEAILDYPLHSNGLVDAPKVLADIVESTIGAV 203
LH +RHN P L + + S + L + +N K+L D+ ES IGAV
Sbjct: 661 LHDGIRHNIPSLPSMVDKLRSVRLADVTSLSELREKIQTNITASPMKILGDVFESLIGAV 720
Query: 204 FIDCNSSIDIVWKVFKELL 222
F+D N + ++ + LL
Sbjct: 721 FVDTNGDLQVIQTIVHRLL 739
>gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
Length = 1510
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 44/294 (14%)
Query: 47 LFVN------EKAGDESESESLPN-------ANNLDE----EEILGYRFNNKNLLEEAFT 89
+FVN EK D S SLPN A+ +D + LGY F LL AF
Sbjct: 1189 VFVNSDDHRVEKWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFM 1248
Query: 90 DPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLAR 146
PS P ++ + Y+RLE++GDS+L+++ F YP+ P LT + A V+ + L
Sbjct: 1249 HPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGS 1308
Query: 147 VAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-------PKVLADIVEST 199
+A+ L LH +L H L+ QI ++E + + G ++A PK L DIVE+
Sbjct: 1309 LAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAY 1368
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTELYEV------CQKNKL 248
+GA+F+D N + D+V F++ ++ ++ HP+T L+ C L
Sbjct: 1369 LGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFANKHPITFLHTRLAVDFGCTFYAL 1428
Query: 249 K---VKFVDLWKESTAFHIFIEDQLLGRG-AYAPKKEIAHNRAAKDALNNIERL 298
K + VD + + D ++ G A +P+ A +A+++AL +E +
Sbjct: 1429 KADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRH--AKLKASQNALQILEEM 1480
>gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
Length = 1510
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 44/294 (14%)
Query: 47 LFVN------EKAGDESESESLPN-------ANNLDE----EEILGYRFNNKNLLEEAFT 89
+FVN EK D S SLPN A+ +D + LGY F LL AF
Sbjct: 1189 VFVNSDDHRVEKWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFM 1248
Query: 90 DPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLAR 146
PS P ++ + Y+RLE++GDS+L+++ F YP+ P LT + A V+ + L
Sbjct: 1249 HPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGS 1308
Query: 147 VAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-------PKVLADIVEST 199
+A+ L LH +L H L+ QI ++E + + G ++A PK L DIVE+
Sbjct: 1309 LAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAY 1368
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTELYEV------CQKNKL 248
+GA+F+D N + D+V F++ ++ ++ HP+T L+ C L
Sbjct: 1369 LGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFANKHPITFLHTRLAVDFGCTFYAL 1428
Query: 249 K---VKFVDLWKESTAFHIFIEDQLLGRG-AYAPKKEIAHNRAAKDALNNIERL 298
K + VD + + D ++ G A +P+ A +A+++AL +E +
Sbjct: 1429 KADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRH--AKLKASQNALQILEEM 1480
>gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
Length = 1519
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 141/294 (47%), Gaps = 44/294 (14%)
Query: 47 LFVN------EKAGDESESESLPN-------ANNLDE----EEILGYRFNNKNLLEEAFT 89
+FVN E+ D S SLPN A+ +D + LGY F LL AF
Sbjct: 1198 VFVNSDDHRVERWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFM 1257
Query: 90 DPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLAR 146
PS P ++ + Y+RLE++GDS+L+++ F YP+ P LT + A V+ + L
Sbjct: 1258 HPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGS 1317
Query: 147 VAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-------PKVLADIVEST 199
+A+ L LH +L H L+ QI ++E + + G ++A PK L DIVE+
Sbjct: 1318 LAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAY 1377
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTELYEV------CQKNKL 248
+GA+F+D N + D+V F++ ++ ++ HP+T L+ C L
Sbjct: 1378 LGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFANKHPITFLHTRLAVDFGCTFYAL 1437
Query: 249 K---VKFVDLWKESTAFHIFIEDQLLGRG-AYAPKKEIAHNRAAKDALNNIERL 298
K + VD + + D ++ G A +P+ A +A+++AL +E +
Sbjct: 1438 KADEIPCVDGTTVRALAAVCVHDDIVAEGVASSPRH--AKLKASQNALQILEEM 1489
>gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1572
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 23/191 (12%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
Y F LL AF PS P E +Y+RLE++GDS+L++ ++ YP+ P LT
Sbjct: 1290 YHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPDKDPQWLT 1349
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----------SEAILDYPLHS 182
++ V+ + L V +KLG H Y++ N +L QIR++ + + +DY +
Sbjct: 1350 EHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAEREASSAVDYWV-- 1407
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT-------HP 235
+ + PK LAD++E+ A+F+D +V F LKP TL+ HP
Sbjct: 1408 -TISEPPKCLADVIEAYTAAIFVDAEFDFSVVQDFFNMHLKPFFEDMTLEAYENFASNHP 1466
Query: 236 VTELYEVCQKN 246
T L + N
Sbjct: 1467 TTRLSRILSIN 1477
>gi|350423180|ref|XP_003493408.1| PREDICTED: endoribonuclease Dcr-1-like [Bombus impatiens]
Length = 1934
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 23/237 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY F++ + L +AFT S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1681 EKSIGYEFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDGRQHSP 1740
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-------------- 174
G+LT LRSA VN A +A++ G HKY RH P L I F
Sbjct: 1741 GALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRIQQENGHSISEEYYL 1800
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH 234
I + V+ PK L D+ ES GA+++D S+D VW V+ ++K I E T+
Sbjct: 1801 IGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYAIMKNEI--EQFSTN 1858
Query: 235 -PVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHN-RAAK 289
P + + E+ + KF K + + + + G+G++ K I N R AK
Sbjct: 1859 VPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSF---KGIGRNYRIAK 1912
>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
Length = 1257
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 25/229 (10%)
Query: 40 ISHLLQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS 99
I LL + N G + +P A+ L E +GY+F N+ L +AFT PS +
Sbjct: 976 IDMLLGSISQNPVIGVGDPNYYMPWADTL--ESKIGYKFKNRAFLLQAFTHPSYTANGIT 1033
Query: 100 --YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
Y+RLE++GD++L+ L+T + NL PG LT LRSA VN A ++++ GLH L
Sbjct: 1034 ECYQRLEFLGDAILDFLITCYIYENDVNLSPGDLTDLRSALVNNITFACLSVRHGLHTAL 1093
Query: 158 RHNKPLLEEQIREFS--EAILDYPLHSNGL--------------VDAPKVLADIVESTIG 201
P L E I F + DY ++ L VD PKVL D+ ES IG
Sbjct: 1094 LAYAPKLHEIIDCFVRFQEERDYVVNDELLYVLIEEDECNITEYVDVPKVLGDLFESLIG 1153
Query: 202 AVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYE---VCQK 245
A+++D ++ VW++ + I + P+ +YE +C K
Sbjct: 1154 AIYLDSGKNLTKVWEIIYSFMHKEIDEFSRNIPKQPIRVIYENTDICPK 1202
>gi|156368540|ref|XP_001627751.1| predicted protein [Nematostella vectensis]
gi|156214670|gb|EDO35651.1| predicted protein [Nematostella vectensis]
Length = 199
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY F+NK L +A T S + + Y+RLE++GD++L+ L+T+ + NL P
Sbjct: 5 EKRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLDP 64
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKP------------LLEEQIREFSEAIL 176
G LT LR A VN A +A+K G +K L P + E + R + L
Sbjct: 65 GELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREARGIQDPFL 124
Query: 177 DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTH 234
++APKVL DI ES GA+F+D + + W+V+ +LKP I + + +
Sbjct: 125 TLSNDDEEGIEAPKVLGDIFESVAGAIFLDSGMDLVLTWRVYYRMLKPYIDAYSADVPKN 184
Query: 235 PVTELYE 241
PV ++E
Sbjct: 185 PVRLIHE 191
>gi|353227266|emb|CCA77779.1| hypothetical protein PIIN_03414 [Piriformospora indica DSM 11827]
Length = 1418
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 9/161 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
EE LGY F +K+LL EA T PS SY+RLE++GD+VL+L+ + F LYPN G
Sbjct: 1096 EENLGYTFKDKSLLVEALTHPSFVSGSASYQRLEFLGDAVLDLVTVEHFFHLYPNATSGK 1155
Query: 131 LTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLL----EEQIREFSEAILDYPLHSNGL 185
LTR R+ V L+ + KL +HK + + L + R F+ + +
Sbjct: 1156 LTRARARCVCNSTLSALGTKKLEIHKAMFCDAISLVAAANKTARMFNSMDFTQVIDNIWR 1215
Query: 186 VDAPKVLADIVESTIGAVFIDC----NSSIDIVWKVFKELL 222
+DAPK L D+VE+ IGAVF+D N D+V ++FKE+L
Sbjct: 1216 LDAPKALGDMVEALIGAVFVDSGWNYNIVKDVVIRLFKEVL 1256
>gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869364|gb|EIT78563.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
Length = 1374
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LGYRF LL AFT PS P + Y+RLE++GDS+L+++ + F+ YP+
Sbjct: 1157 EEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDKD 1216
Query: 128 PGSLTR------------------LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIR 169
P LT L+ A V+ + L +A+KLGLH +LRH L+ QI
Sbjct: 1217 PQWLTEHKVSVRLFVSTKHLLTITLQMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQIT 1276
Query: 170 EFSEAILDYPLHSNGLVD-------------APKVLADIVESTIGAVFIDCNSSIDIVWK 216
++E I S G VD P L D+VE+ +GA F+D + +V
Sbjct: 1277 HYAEEIQAAENESQGAVDYWLVTKDPPKVRRCPGCLPDMVEAYLGAAFVDSDFQFRVVED 1336
Query: 217 VFKELLK 223
F+ +K
Sbjct: 1337 FFQRHVK 1343
>gi|429848709|gb|ELA24159.1| RNase3 domain protein [Colletotrichum gloeosporioides Nara gc5]
Length = 1561
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE +GY+F + LL AF PS P + S Y+RLE++GD++L+++ F +PN
Sbjct: 1268 EESMGYKFKSPALLRSAFHHPSYPRAYESLPDYQRLEFLGDALLDMVCVDFLFNKFPNAD 1327
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----------SEAILD 177
P LT + A V+ + LA +++KLGLHK++ + Q E+ +E+ +
Sbjct: 1328 PQWLTEHKMAMVSNQFLASLSVKLGLHKHILVGTSAMLSQKEEYVSSLNLAMAEAESGAE 1387
Query: 178 YPLHSN----GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-- 231
+ S + +PK L+D++E+ +GAVF+D + V K F + ++P + +L
Sbjct: 1388 SGMFSQDYWINVKHSPKYLSDVLEAYVGAVFVDSGYDYNEVRKFFDKHIRPFFTDMSLYD 1447
Query: 232 ---KTHPVTELYEVCQK 245
K HPVT L + +K
Sbjct: 1448 SFAKKHPVTRLSHLMEK 1464
>gi|242763899|ref|XP_002340666.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
gi|218723862|gb|EED23279.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
Length = 1494
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 123/251 (49%), Gaps = 30/251 (11%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT PS P + + Y+RLE++GDS+L+++ ++ + +P+ P
Sbjct: 1213 LGYCFQYPKLLRSAFTHPSYPSAWSTVPCYQRLEFLGDSLLDMVCVEDLYERFPDRDPQW 1272
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF---------SEAILDYPLH 181
LT + A V+ + L +A++L LH +L++ L+ QI S +D+ LH
Sbjct: 1273 LTEHKMAMVSNKFLGSLAVRLSLHTHLQYFSNPLQAQIARAVQDSQLAYDSHQTVDFWLH 1332
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPV 236
++ D PK L+D+VE+ +GA+F+D ++ + + +KP L HP
Sbjct: 1333 TD---DPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMALYDTFANKHPT 1389
Query: 237 TELYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRA 287
T L+ C + L+ + VD + + D +L +G A A +A
Sbjct: 1390 TFLHRKLTDDFGCIQYTLRAAEIPSVDGAPPVVLAAVLVHDVVLAQGT-ASSGRYAKIKA 1448
Query: 288 AKDALNNIERL 298
++ A+ N+E L
Sbjct: 1449 SEVAMKNLEGL 1459
>gi|453081348|gb|EMF09397.1| dicer-like protein 1 [Mycosphaerella populorum SO2202]
Length = 1541
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 117/249 (46%), Gaps = 26/249 (10%)
Query: 75 GYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
YRF LL AF PS P E+ +Y+RLE++GD++L+ F YP+ P L
Sbjct: 1251 AYRFKYPRLLYSAFMHPSVPYINEKVPNYQRLEFLGDALLDQASITWLFNKYPDKDPQWL 1310
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL-------DYPLHSNG 184
T + A V+ + L V + +G HK+LRH +L+ QI ++ ++ D +
Sbjct: 1311 TEHKMAMVSNKFLGAVCVNIGFHKHLRHYHAVLQSQITAYAADLMEAKRIAGDSRDYWTT 1370
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTEL 239
+ D PK L DIVE+ IGA+FID + + V + F E ++ T+ HP T L
Sbjct: 1371 VSDPPKCLPDIVEAYIGALFIDSDFNYGEVQRFFHEHVQWYFEDMTVYDTFANNHPCTHL 1430
Query: 240 YEV------CQKNKLKVK---FVD-LWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ + C +L K VD + ++ + I DQ++ A A R A
Sbjct: 1431 HNMLQTTFGCMDYRLMAKELPSVDGMERKDVVAVVMIHDQVMASSA-GKSGRYARLRVAN 1489
Query: 290 DALNNIERL 298
AL ++ L
Sbjct: 1490 KALEKLDGL 1498
>gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis]
Length = 1981
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 107/238 (44%), Gaps = 65/238 (27%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF------------------SYERLEYVGDSVLN 112
EEI+GY F N+ LL EAFT +C + YERLE++GD+VL+
Sbjct: 1700 EEIIGYTFKNRRLLIEAFTHSTCRDLHGPPSDDDGGFHGSVTSISGGYERLEFLGDAVLD 1759
Query: 113 LLLTKEQFFLYPN-----LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ 167
+T+ FL+ L PG+LT LRSA VN +A++ GLH +LR P L
Sbjct: 1760 YAVTR---FLFTTDATARLSPGALTDLRSALVNNVVFGALAVRHGLHAFLRAAAPPLTRT 1816
Query: 168 IREF-------------------------------SEAILDYPLHSNGLVDAPKVLADIV 196
+ F S+A D +N V+ PK L D+
Sbjct: 1817 MALFLRHHHDVVRGDLDVLIAPEVNACRENKGATASQAEGD---RANEEVEVPKALGDVF 1873
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYEVCQKNKLKVKF 252
ES GAVF+D ++ +W+VF LL+ I + PV L E+C + +VKF
Sbjct: 1874 ESLAGAVFLDSGLCLNTLWRVFFPLLRERIERYSTCVAKSPVRRLLELCPE---RVKF 1928
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 97 FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F + ERLE +GDS L +T + F YP G L+ LRS V L R+ + L
Sbjct: 1518 FINMERLETIGDSFLKFAVTMDLFLRYPEAHEGHLSSLRSQIVGNSNLYRLGCEKNL 1574
>gi|78044311|ref|YP_360276.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
gi|90101616|sp|Q3AC58.1|RNC_CARHZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|77996426|gb|ABB15325.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
Length = 235
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC----PERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPN 125
E+ILG+ FNN ++L A T PS PE + ERLE++GD+VL L ++ F +P
Sbjct: 10 EKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTFPQ 69
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G LT+LRS V E L +A K+ L K+LR K ++ N
Sbjct: 70 KSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKG--------------EFKAGGNQR 115
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ LA+ VE+ IGAV+ DC ++ + +++ E LKP + E L T L E+
Sbjct: 116 MSN---LANAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPE-NLEQLPKDEKTTLQELL 171
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
QK K V ++ E H + I D+L+ G KKE A AAK AL E
Sbjct: 172 QKEKNNVLRYEILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKE-AEQEAAKKAL---E 227
Query: 297 RLLNEK 302
L NEK
Sbjct: 228 LLKNEK 233
>gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus]
Length = 1608
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 25/225 (11%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
EI+G F L+ EA T S P Y+RLE++GD++L+ ++ + F YP+ PG
Sbjct: 1330 EIVGREFKTPLLIVEALTHASLPNSTSPCYQRLEFLGDAILDFMVIRYLFARYPDADPGI 1389
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----------SEAILDYPL 180
+T L+ + VN L V I+ GL++++ H L I F EA+ +Y +
Sbjct: 1390 ITDLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEVEETKARGEAVGEYWV 1449
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETLKTHPV 236
N PKVL+D+VES +GA F+D ++ V ++F + P+ ++PE +K HP+
Sbjct: 1450 DFN----IPKVLSDVVESMLGATFVDAGFRLEAVEELFAKWFLPILNNHVTPELIKFHPL 1505
Query: 237 TELYEVCQKNKLKVKFV------DLWKESTAFHIFIEDQLLGRGA 275
+L Q+ + + ES IF+ D+ L G+
Sbjct: 1506 RKLITDLQRFGCDSFMLRNHGSGETGPESQKCVIFLHDKPLATGS 1550
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 79 NNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSAN 138
++ N+LE A+T PS +YERLE +GDS+L + T + +P G L LR
Sbjct: 1146 DDANMLE-AYTTPSANMEM-NYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRV 1203
Query: 139 VNTEKLARVAIKLGLHKYL-------RHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
+ L R A +L ++Y+ R+ +P + E I H L D K
Sbjct: 1204 ICNRALYRSAKRLKFYRYVTSQAFNRRYWRPPGFTSPADNQETIDGLKYHK--LSD--KT 1259
Query: 192 LADIVESTIGAVFI 205
LADIVE+++GA ++
Sbjct: 1260 LADIVEASLGAAYL 1273
>gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
gi|158706438|sp|A1DE13.1|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
Length = 1538
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 16/186 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
EE LGY F LL A T PS P R Y+RLE++GDS+L+++ ++ F +P+
Sbjct: 1258 EEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDR 1317
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P LT + A V+ + L +++KLG H+ + L+ QI + E I S G V
Sbjct: 1318 DPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIESAQAESRGAV 1377
Query: 187 -------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTH 234
D PK L D+VE+ +GA+F+D ++ F+ +KP ++ H
Sbjct: 1378 DYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQIKPFFEDMSIYDTFANKH 1437
Query: 235 PVTELY 240
P T L+
Sbjct: 1438 PTTFLH 1443
>gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
Length = 1518
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 27/250 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AF PS P ++ + Y+RLE++GDS+L+++ F YP+ P
Sbjct: 1242 LGYCFRYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQW 1301
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-- 188
LT + A V+ + L +A+ L LH +L H L+ QI ++E + + G ++A
Sbjct: 1302 LTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWT 1361
Query: 189 -----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
PK L DIVE+ +GA+F+D N + D+V F++ ++ ++ HP+T
Sbjct: 1362 YTNEPPKCLPDIVEAYLGAMFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFANKHPITF 1421
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRG-AYAPKKEIAHNRAA 288
L+ C LK + VD + + D ++ G A +P+ A +A+
Sbjct: 1422 LHTRLAVDFGCTFYALKADEIPCVDGTTVRALAAVCVHDDIVAEGVAISPRH--AKLKAS 1479
Query: 289 KDALNNIERL 298
++AL +E +
Sbjct: 1480 QNALQILEEM 1489
>gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
Length = 1497
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 26/260 (10%)
Query: 65 ANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFF 121
AN +D++ LGYRF LL AFT PS P + Y+RLE++GDS+L+++ + +
Sbjct: 1211 ANQIDKK--LGYRFKYPRLLRSAFTHPSYPTAWSIVPCYQRLEFLGDSLLDMVCIENLYE 1268
Query: 122 LYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH-NKPLLEEQIREFSEAILDYPL 180
+P+ P LT + A V+ + L +A++L LH +L++ + PL + +A L Y
Sbjct: 1269 RFPDRDPQWLTEHKMAMVSNKFLGSLAVRLDLHTHLQYFSNPLQGRIAQAVEDAQLAYES 1328
Query: 181 HSN-----GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL---- 231
H + + D PK L+D+VE+ +GA+F+D ++ + + +KP +L
Sbjct: 1329 HQSVDFWIMIEDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMSLYDTF 1388
Query: 232 -KTHPVTELYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKE 281
HP T L+ C + LK + VD + + D L + A A
Sbjct: 1389 ANKHPTTFLHGKLTDDFGCIQYTLKAAEIPSVDGAPTVVLAAVLVHDVDLAQ-ATASSGR 1447
Query: 282 IAHNRAAKDALNNIERLLNE 301
A +A++ AL N+E L E
Sbjct: 1448 YAKIKASEVALKNLEGLSAE 1467
>gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
Length = 685
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 26/209 (12%)
Query: 58 ESESLPNANNL-DEEEILGYRFNNKNLLEEAFTDPS-----CPERFFSYERLEYVGDSVL 111
E + NA+NL D E +LGY F ++ LL A T + E Y+RLE++GD++L
Sbjct: 420 EISKIYNAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAIL 479
Query: 112 NLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
++ + + N P L A++ E LA + + G+HKY +N P L QI +
Sbjct: 480 QYIVVRHCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSPSLFSQINQL 539
Query: 172 SEAILDYP--------------LHSNGLVDA---PKVLADIVESTIGAVFIDCNSSIDIV 214
+ I+D ++SN L D PK L D+ ES IGA+FIDC SI++V
Sbjct: 540 LQ-IVDTNEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVV 598
Query: 215 WKVFKELLKPM--ISPETLKTHPVTELYE 241
+ LL+P I + + P+ L+E
Sbjct: 599 NDLVLRLLQPQHAIFAQGVPKSPIRILHE 627
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
F+ E LE++GDS L ++ F Y G L+ L+S V+ E L ++ IK+GL Y+
Sbjct: 259 FNLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENLYQIGIKMGLPGYI 318
>gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus]
gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus]
Length = 1665
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E IL Y F ++ L +A T S P SY++LE+VGD+VL+ L++ + P + P
Sbjct: 1414 ERILDYTFKDRTYLLQALTHASYPTNRITGSYQQLEFVGDAVLDFLISAYIYEQNPTMSP 1473
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIRE---FSEA----------- 174
G LT LRSA VN LA + ++ GLH Y+ L + + + F EA
Sbjct: 1474 GQLTDLRSALVNNITLACILVRHGLHLYILSESASLTDTVSKFVAFQEAHKHEITDQVNL 1533
Query: 175 ILDYPLHSNG----LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
+ + G VD PK L D+ ES IGAVF+D + +++ W+V L+ I+ +
Sbjct: 1534 LSEESERCQGAMAEFVDVPKALGDVFESLIGAVFLDSGNDLEVTWRVIYGLMHHEIATFS 1593
Query: 231 LKT--HPVTELYE 241
++T V LYE
Sbjct: 1594 VETPIQIVRRLYE 1606
>gi|302819689|ref|XP_002991514.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
gi|300140716|gb|EFJ07436.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
Length = 569
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 123/259 (47%), Gaps = 45/259 (17%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSA-----NVN 140
EA T C E F SYE LE +GDS L ++T++ F +Y G L+ R+ ++
Sbjct: 311 EAITSKKCHEEF-SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNTYATKNSIL 369
Query: 141 TEKLARVAIKLGLHK------------YLRHNKPLLEE---------------------- 166
LAR + L +H+ Y N+ LL E
Sbjct: 370 PTGLARACLPL-IHQNASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQHGSVELD 428
Query: 167 -QIREFSEAILDYPLHSN-GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP 224
+IR+F + + + P S + APKVL D++ES GA+F+D N ++ +W+V LL P
Sbjct: 429 CEIRKFVQNVKEKPDASCFEDLSAPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSP 488
Query: 225 MISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHI-FIEDQLLGRGAYAPKKEIA 283
+++P TL+ HPV L E+C + +KV F +T + F E+ L+ P+K A
Sbjct: 489 LVTPGTLRFHPVRILMELCARQGMKVSFFRTEATTTEVRVTFGEESLVETSQEKPRKS-A 547
Query: 284 HNRAAKDALNNIERLLNEK 302
AA L +++ LL +K
Sbjct: 548 KIDAALKMLASLQLLLYQK 566
>gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 19 EKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPRQHSP 78
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 79 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 134
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 194
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ + KF + + + +++G+G + IA
Sbjct: 195 SANVPRSPVRELLEMEPET---AKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 250
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 251 SAAARRALRSLK 262
>gi|405960420|gb|EKC26346.1| Endoribonuclease Dicer [Crassostrea gigas]
Length = 1759
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ +GY F +K+ L +AFT S + Y+RLE++GD++L+ ++T+ + P
Sbjct: 1510 EQKIGYEFRDKSYLLQAFTHASYHYNTVTDCYQRLEFLGDAILDYVITRHLYEDSCKYSP 1569
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------------SEAI 175
G LT LRSA VN A +A+K HKY + P L I +F S+
Sbjct: 1570 GVLTDLRSALVNNNIFAALAVKWDFHKYFKAISPPLFGVIEKFVARQKEREDEIDLSDDE 1629
Query: 176 LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE--TLKT 233
+ + ++ PK L DI ES GA+++D S+D VW+V+ ++KP I ++
Sbjct: 1630 GEGEEEEHVELEVPKALGDIFESLAGAIYLDSKMSLDTVWRVYYRIMKPQIDKYLLSIPK 1689
Query: 234 HPVTELYEV 242
PV EL E+
Sbjct: 1690 SPVRELLEM 1698
>gi|409050172|gb|EKM59649.1| hypothetical protein PHACADRAFT_114689 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1230
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 27/238 (11%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTKEQF 120
LP + E I G++F+ +L EA T S + SY+RLE++GD +L+ + F
Sbjct: 939 LPVGTSEAVEAITGFKFHTPAILAEALTHGSISNQHMTSYDRLEFLGDGILDSNIVWYIF 998
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD--- 177
YP L PG L+ L++A V+ LA VA++ GL++++R+ + ++ + + I
Sbjct: 999 KAYPKLSPGGLSLLKAAMVSNLTLAAVAVESGLYEHVRYCSKEIMSAVKLYVQKIFTLRD 1058
Query: 178 -----------YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM- 225
P VDAPK LAD+VE+ +GA+++ V F+++L+P
Sbjct: 1059 QEYRDAEAESRLPNQFWLEVDAPKPLADLVEAIVGAIYVSDRFGTQGVKTFFQKVLRPFY 1118
Query: 226 ---ISPETLKTHPVTELYEV-----CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGA 275
I TL HP T L+E CQ++ ++ +L KE + + I D +L A
Sbjct: 1119 DRHIRLHTLAPHPGTSLFEFLQAEGCQQHAMRK--TNLGKEVRS-EVVIHDIVLASAA 1173
>gi|451856503|gb|EMD69794.1| hypothetical protein COCSADRAFT_341850 [Cochliobolus sativus ND90Pr]
Length = 1575
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 23/184 (12%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
Y F LL AF PS P E SY+RLE+ GD++L++ +F YP+ P LT
Sbjct: 1289 YHFKYPRLLRSAFAHPSYPYMYENIPSYQRLEFAGDALLDMAFITHLYFKYPDKDPHWLT 1348
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----------SEAILDYPLHS 182
++ V+ + L V +KLG H +++ N L QIR++ + +DY +
Sbjct: 1349 EHKTPMVSNKFLGAVCVKLGWHVHIKQNTATLTNQIRDYVLEAEEAEREAGGAVDYWV-- 1406
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT-------HP 235
+ D PK LAD++E+ + ++F+D +V F+ LKP TL + HP
Sbjct: 1407 -TISDPPKCLADVIEAYVASIFVDSEFDFGVVQTFFEMHLKPFFLDMTLDSYENFASNHP 1465
Query: 236 VTEL 239
T L
Sbjct: 1466 TTRL 1469
>gi|340373457|ref|XP_003385258.1| PREDICTED: endoribonuclease Dicer-like [Amphimedon queenslandica]
Length = 1520
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 128/285 (44%), Gaps = 49/285 (17%)
Query: 59 SESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLL 115
S ++P + L + F+++ LL +A T PS + SY+RLE++GD+VL+ L+
Sbjct: 1230 SSAVPGGGRSSLYDKLSWDFSDRALLLQALTHPSYSNKNRVTRSYQRLEFLGDAVLDYLI 1289
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREFSEA 174
T + +P+ PG +T RSA VN A +A+ KL LH YL + P L +I E+ E
Sbjct: 1290 TCCLYTEFPSYTPGQITETRSALVNNVTFAEIAVKKLSLHTYLLYLSPSLFRKITEYVEF 1349
Query: 175 ILDYPLHS----------------------NGLV--------------DAPKVLADIVES 198
+ + S NG + + PKVL D++ES
Sbjct: 1350 LQEDERESGSEKELIYCRFGDQSENVHEEMNGDIAMLEEEEEADITELEPPKVLGDVLES 1409
Query: 199 TIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK-----THPVTELYEVCQKNKLKVKFV 253
GA+F+D S++ VW F +P+I E+ K HP+ EL + +++
Sbjct: 1410 LAGALFLDSGMSLETVWSYFYPFFRPLI--ESFKEKGPPVHPIQELMRT--EPSVEIMQS 1465
Query: 254 DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+ I + D+ + A + A N AAK + I+ +
Sbjct: 1466 STRRSKHRCTIKVIDKDIQVSCIAESYKTAKNGAAKRVIRKIKEI 1510
>gi|414154272|ref|ZP_11410591.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454063|emb|CCO08495.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 249
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 40/253 (15%)
Query: 66 NNLDEE-----EILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLL 115
+ LDE+ + LG++++N +LL +A T SC + +RLE++GD+VL L++
Sbjct: 5 SKLDEQTHRLKQRLGFQWHNPSLLIQALTHSSCVHESRGHGIYHNQRLEFLGDAVLELVV 64
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI 175
++E + ++P+ G LT++R+A+V LA+ A +L L + LR + EE+
Sbjct: 65 SEELYRMFPDRTEGELTKMRAASVCEPSLAKAARELDLGRCLRMGRG--EER-------- 114
Query: 176 LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLK 232
+G + P +LAD E+ +GA+++D ++ + LKP+I L
Sbjct: 115 -------SGGRERPSILADAFEALLGAIYLD--QGLEEARRFVLSCLKPIIDDVVAGRLD 165
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHN 285
TEL E Q+ + + ES H +F +++G G+ KKE A
Sbjct: 166 RDYKTELQETLQQTSPEPLVYKIMGESGPDHDKTFTAGVFYRGRVIGTGSGHSKKE-AEQ 224
Query: 286 RAAKDALNNIERL 298
+AAKDA N++RL
Sbjct: 225 QAAKDAFMNLDRL 237
>gi|350855011|emb|CAZ36047.2| dicer-1, putative [Schistosoma mansoni]
Length = 2319
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 134/312 (42%), Gaps = 98/312 (31%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFS-------------------YERLEYVGDSV 110
E L Y F + +LL +AFT PS + R S Y+RLE++GD+V
Sbjct: 2003 ESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEFLGDAV 2062
Query: 111 LNLLLTKEQFFLYPNL---PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ 167
L+ ++T+ FLY + PG LT LRSA VN A +A+++GLHKY R + P L
Sbjct: 2063 LDYVITR---FLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLLHT 2119
Query: 168 I-------REFSEAILDY-----------PLH---------------------------- 181
I ++ ++ LD+ P H
Sbjct: 2120 IDVFVRYQKDVAKDDLDFITNESENQSSKPQHQTYEQHLSKSGKSNNANNTIPTNTGHLT 2179
Query: 182 SNGL---VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
+N L V+ PK L+DI ES GA+F+D N S+D VW++F ++K I E
Sbjct: 2180 TNRLSDDVEIPKALSDIFESLAGAIFLDSNFSLDTVWQIFYPIMKERI-----------E 2228
Query: 239 LYEVCQKNKLKVKFVDLWKESTAF---------HIFIEDQLLGRGAY---APKKEIAHNR 286
Y C + ++L E T F I + +LG+G + +A +
Sbjct: 2229 RYTACIPKSPVRQLLELEPEGTKFERARRMVDGRISVCAHVLGKGRFYGVGRNYRLAKSL 2288
Query: 287 AAKDALNNIERL 298
AAK AL + RL
Sbjct: 2289 AAKRALRVLRRL 2300
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 92 SCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRS---ANVNTEKLAR-- 146
SC F + ER+E +GDS L ++T + YP G L+ LRS N N +L +
Sbjct: 1758 SCSNDFINLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNLYRLGKAK 1817
Query: 147 ------VAIKLGLHK-------YLRHNKPLLEEQIREF 171
+ K H+ Y+R +K L E I++F
Sbjct: 1818 DLQNRMIGCKFEPHENWIPPGYYVRQDKRLNNEIIKKF 1855
>gi|158706522|sp|Q4WVE3.3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1537
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 16/186 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
EE LGY F LL A T PS P R Y+RLE++GDS+L+++ ++ F +P+
Sbjct: 1257 EEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDR 1316
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P L+ + A V+ + L +++KLG H+ + L+ QI + E I S G V
Sbjct: 1317 DPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGAV 1376
Query: 187 -------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTH 234
D PK L D+VE+ +GA+F+D ++ F+ +KP ++ H
Sbjct: 1377 DYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKH 1436
Query: 235 PVTELY 240
P T L+
Sbjct: 1437 PTTFLH 1442
>gi|388565188|gb|AFK73581.1| dicer-2 [Nilaparvata lugens]
Length = 1656
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+++ Y+F ++ L +A + P+ P +Y+RLE++GD++L+ L+T + NL P
Sbjct: 1408 EKLINYKFKDRTFLLQALSHPTYQPNNITPTYQRLEFLGDAILDFLVTTHMYEYCDNLTP 1467
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI----LDYPLHSNG 184
G LT LRSA VN LA +A+++GLHK+L L + I F E D+ +
Sbjct: 1468 GELTDLRSALVNNVTLASIAVRIGLHKFLLLRSCQLSKVIEAFVERQESRNHDFSDDTLF 1527
Query: 185 LVD-----------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---MISPET 230
L+D PK+L D+ ES +GA+F+D N + W + M S +
Sbjct: 1528 LIDEIDCIIGESIEVPKILGDVFESLVGAIFLDSNKCLKTTWDFIYRFMHKEIEMFSKKV 1587
Query: 231 LKTHPVTELYE 241
K H + LYE
Sbjct: 1588 PKNH-IRLLYE 1597
>gi|407923675|gb|EKG16741.1| Ribonuclease III [Macrophomina phaseolina MS6]
Length = 1533
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 26/243 (10%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
YRF + LL AF PS P E+ SY+RLE++GDS+++ + +P+ P LT
Sbjct: 1233 YRFRSAKLLRSAFMHPSYPFNYEKVPSYQRLEFLGDSLIDTACITWLIYKFPDKDPQWLT 1292
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD----- 187
+ A V+ + L V +KLG HK+L+++ +E QIR++ + + S G D
Sbjct: 1293 EHKMAMVSNKFLGAVCVKLGFHKHLKYSYSQMEYQIRDYVTELREAERESKGARDYWTTV 1352
Query: 188 --APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTELY 240
PK L DIVE+ +GA+F+D + V F +K T+ +HPVT L+
Sbjct: 1353 KSPPKCLPDIVEAYVGALFVDSEYNFAKVEMFFDMHIKWYFEDITIYDSYANSHPVTRLH 1412
Query: 241 EV------CQKNKLKVK----FVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
C ++K+ + E + + ++++ G YA + A +AA
Sbjct: 1413 SFLYEEFGCNEHKIFAQELPTITPGGPEKCIAGVMVHNRMISEG-YASAGKSAKVKAALA 1471
Query: 291 ALN 293
A N
Sbjct: 1472 AQN 1474
>gi|444841767|gb|AGE12616.1| Dicer 2 [Laodelphax striatella]
Length = 1654
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ++ Y+F + L +A + P+ P +Y+RLE++GD++L+ L+T F NL P
Sbjct: 1406 ERLINYKFKQRAFLLQALSHPTYQPNNITPTYQRLEFLGDAILDFLITTHIFEHCDNLTP 1465
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA-------ILDYPLH 181
G LT LRSA VN LA +A+++GLHK+L L + I F E D L+
Sbjct: 1466 GELTDLRSALVNNVTLASIAVRIGLHKFLLLRSFQLSKVIESFVERQESRQHEFTDQTLY 1525
Query: 182 ------SN--GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---MISPET 230
SN ++ PK+L D+ ES +GA+F+D N + W+ + M S +
Sbjct: 1526 LINEIDSNVGECIEVPKILGDVFESLVGAIFLDSNRCLKTTWEFIYRFMHKEIEMFSKKV 1585
Query: 231 LKTHPVTELYE 241
K H V LYE
Sbjct: 1586 PKNH-VRLLYE 1595
>gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
Length = 222
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 27/227 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+ LGY+F +KNLL+ A T S + YERLE++GD+ L L ++K + +P L G
Sbjct: 5 EKALGYKFEDKNLLKLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSEG 64
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT +R+A V ++ L++VA KL L ++ K E++ +F H N
Sbjct: 65 ELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGK---REKMEKF---------HEN-----K 107
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET---LKTHPVTELYEVCQK- 245
+LAD++E+ GA+FI+ S D V K+ LLKP I L T+L E+ Q+
Sbjct: 108 SILADVLEALFGAIFIE--SGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQRE 165
Query: 246 NKLKVKFVD---LWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ K+ + D L K+ +FIE + + G KKE + A K
Sbjct: 166 GQKKIVYKDCEILEKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYK 212
>gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1495
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 15/190 (7%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY F LL AFT PS P + Y+RLE++GD++L+++ + F +PN P
Sbjct: 1217 EKVGYDFKYPRLLRSAFTHPSYPLAWAKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDP 1276
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV-- 186
LT + A V+ + L +A+KLGLH +L+H L Q +++E I SNG V
Sbjct: 1277 QWLTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEEIQLAESESNGEVDY 1336
Query: 187 -----DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPV 236
D+PK L D++E+ +GA+F+D ++ F+ + P ++ HP
Sbjct: 1337 WLSTSDSPKCLPDMLEAYLGAIFVDSGFDFTVIEAFFQRHILPFFHDMSIYDTFANRHPT 1396
Query: 237 TELYEVCQKN 246
T L+ N
Sbjct: 1397 TFLHSQMTHN 1406
>gi|328770756|gb|EGF80797.1| hypothetical protein BATDEDRAFT_24696 [Batrachochytrium dendrobatidis
JAM81]
Length = 1641
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 139/308 (45%), Gaps = 51/308 (16%)
Query: 23 QWSLVVAMEEAHQEEALISHLLQDLFVNEKAGDESES--ESL----PNANNLDEEEILGY 76
Q +L V+ + + E S+ DL+ + +A S ES+ P A EE+I GY
Sbjct: 1240 QAALAVSRLLSDEYETDWSNYHHDLYTSIQASPSSTDYYESVVHVDPIATKQIEEQI-GY 1298
Query: 77 RFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRS 136
F +K LL EA T + ++RLE++GD+VL+ L + + + P L PG L++LR+
Sbjct: 1299 TFRDKTLLWEALTHSGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRA 1358
Query: 137 ANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY---------PLHSNGLV- 186
V + LA V+I++GL KY+RH +E I F+ + Y P+ ++
Sbjct: 1359 ELVCNQFLACVSIQIGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQI 1418
Query: 187 -----------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP------- 228
APK D+ ES +GAVF+D I V +F +ISP
Sbjct: 1419 ASARLFWNKGNTAPKTAGDVYESMLGAVFVDSQFDIHCVQSMFD---ITVISPWWWRFTS 1475
Query: 229 -----ETLKTHPVTEL----YEVCQKNKLKVKF-VDLWKESTA---FHIFIEDQLLGRGA 275
+ +PV EL Y + + K+ + L +TA +H + Q LG G
Sbjct: 1476 LFGGESMIYENPVAELRTLSYSLFKCVKIDYTYEYGLHGGTTATITYHNMVLAQCLGTGQ 1535
Query: 276 YAPKKEIA 283
KK A
Sbjct: 1536 RDAKKAAA 1543
>gi|6102924|emb|CAB59269.1| hypothetical protein [Homo sapiens]
Length = 525
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 273 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 332
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 333 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 388
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 389 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 448
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ + KF + + + +++G+G + IA
Sbjct: 449 SANVPRSPVRELLEMEPET---AKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 504
Query: 285 NRAAKDALNNIE 296
+ AAK AL +++
Sbjct: 505 SAAAKRALRSLK 516
>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 230
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F N LL+EAFT S E+ ERLE++GD+VL L ++ F YPN
Sbjct: 8 QESVGFTFENVGLLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVSDYLFQKYPN 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
L G LT++R+A V L A + KY+R L G
Sbjct: 68 LAEGQLTKMRAAIVCEPSLVEFAENIHFSKYIR-----------------LGNGEEKAGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYEVC 243
P +LAD+ ES IGA+++D + + V + + ++ P I T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGLKNVIRFLERVIFPKIDTGAFLETVDHKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ +ES H + + Q+LGRG KK+ N AAK+A+N +
Sbjct: 169 QRDRDVLIQYDILEESGPAHSKAFEAQVVVNGQMLGRGEGRTKKQAEQN-AAKEAINKL 226
>gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
Length = 1499
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 102/202 (50%), Gaps = 24/202 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E I+G+RF +LL + T S + +YERLE++GD++L+ ++ + F L PG
Sbjct: 1214 EGIIGHRFQQPHLLAQILTHTSVHGSKVLTYERLEFIGDAILDFMVIRHIFDRERTLSPG 1273
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-----LDYPL--HS 182
LT L+ A V LA V I G++K+L L I +++EAI +Y L
Sbjct: 1274 GLTMLKGAMVANSTLATVCILSGIYKHLVFGSYQLSSAIEDYAEAINERADKEYALAEQE 1333
Query: 183 NGL-------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETL 231
N + ++ PK L+D++ES IGA++I N F ++L+P IS TL
Sbjct: 1334 NRMPGQFWPDIEPPKALSDVIESIIGALYISDNFCPVGTEAFFDKVLRPFFDKHISLRTL 1393
Query: 232 KTHPVTELYEV-----CQKNKL 248
HP L+E CQ+ KL
Sbjct: 1394 THHPTKTLFEYIQAHGCQQLKL 1415
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
YERLE +GD+ L L + F + P GSL R ++ + L A ++GL Y+
Sbjct: 989 YERLELLGDAFLKYLASVVVFVMNPTQNEGSLHVARQRLISNKALLACATQVGLPAYI-C 1047
Query: 160 NKPLLEEQIREFSEA 174
+KP L R + A
Sbjct: 1048 SKPFLLRGWRPWPSA 1062
>gi|19072784|gb|AAL84637.1|AF484523_1 endoribonuclease Dicer [Mus musculus]
Length = 361
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 109 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 168
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 169 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 224
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 225 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 284
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ + KF + + + +++G+G + IA
Sbjct: 285 SANVPRSPVRELLEMEPET---AKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 340
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 341 SAAARRALRSLK 352
>gi|452003006|gb|EMD95463.1| hypothetical protein COCHEDRAFT_1026333 [Cochliobolus heterostrophus
C5]
Length = 1592
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 23/184 (12%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
Y F LL AF PS P E +Y+RLE+ GD++L++ +F YP+ P LT
Sbjct: 1306 YHFKYPRLLRSAFAHPSYPYMYENIPNYQRLEFAGDALLDMAFITHLYFKYPDKDPHWLT 1365
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----------SEAILDYPLHS 182
++ V+ + L V +KLG H Y++ N L QIR++ + +DY +
Sbjct: 1366 EHKTPMVSNKFLGAVCVKLGWHVYIKQNTATLTNQIRDYVLEAEEAEREAGGAVDYWV-- 1423
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT-------HP 235
+ + PK LAD++E+ + ++F+D +V F+ LKP TL + HP
Sbjct: 1424 -TISEPPKCLADVIEAYVASIFVDAEFDFGVVQTFFEMHLKPFFLDMTLDSYEKFASNHP 1482
Query: 236 VTEL 239
T L
Sbjct: 1483 TTRL 1486
>gi|125526376|gb|EAY74490.1| hypothetical protein OsI_02382 [Oryza sativa Indica Group]
Length = 256
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 112/198 (56%), Gaps = 12/198 (6%)
Query: 70 EEEILGYRFNNKN--LLEEAFTDPSCPERFFS----YERLEYVGDSVLNLLLTKEQFFLY 123
E + GY F + LLE+A T P ++RLE++GD+ L L +
Sbjct: 25 ERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDD 84
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
P L G LT LRSANV+T+KLARVA+ + R+N + ++ F++++ L+S
Sbjct: 85 PGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSV--EGLYS 142
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
++ P+VLADIVE+ +GAV++D ++++ KV K L +P+I+ + L P + L E+
Sbjct: 143 GDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNEL 202
Query: 243 CQKNK--LKVKFVDLWKE 258
+++ L++K + W++
Sbjct: 203 GGEHREDLEIKIL-AWRK 219
>gi|344995859|ref|YP_004798202.1| ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
gi|343964078|gb|AEM73225.1| Ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
Length = 222
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 29/228 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E LGY F +KNLL A T S + YERLE++GD+ L L ++K F +P L G
Sbjct: 5 ERALGYTFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSEG 64
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT +R+A V ++ L++VA KL L ++ K E++ +F H N
Sbjct: 65 ELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGK---REKMEKF---------HEN-----K 107
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET---LKTHPVTELYEVCQK- 245
+LAD++E+ GA+FI+ S DIV K+ LLKP I L T+L E+ Q+
Sbjct: 108 SILADVLEAIFGAIFIE--SGFDIVEKIIVNLLKPYIQKAVTGKLFYDYKTKLQEIVQRE 165
Query: 246 -NKLKVKFVD---LWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
NK K+ + D + K+ +FIE + + G KKE + A K
Sbjct: 166 GNK-KIVYKDCEIIEKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYK 212
>gi|344248388|gb|EGW04492.1| Endoribonuclease Dicer [Cricetulus griseus]
Length = 1907
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1655 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1714
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1715 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1770
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1771 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1830
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1831 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1886
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1887 SAAARRALRSLK 1898
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 55 DESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLL 114
D +SE P+A LG N L+ +A T + + F + ERLE +GDS L
Sbjct: 1263 DRMDSEQSPSAGY--SSRTLG---PNPGLILQALTLSNASDGF-NLERLEMLGDSFLKHA 1316
Query: 115 LTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
+T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1317 ITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1355
>gi|346716367|ref|NP_001231198.1| endoribonuclease Dicer [Cricetulus griseus]
gi|257051055|sp|A0MQH0.3|DICER_CRIGR RecName: Full=Endoribonuclease Dicer
gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus]
Length = 1917
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1665 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1780
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1840
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1841 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1896
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1897 SAAARRALRSLK 1908
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 55 DESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLL 114
D +SE P+A LG N L+ +A T + + F + ERLE +GDS L
Sbjct: 1273 DRMDSEQSPSAGY--SSRTLG---PNPGLILQALTLSNASDGF-NLERLEMLGDSFLKHA 1326
Query: 115 LTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
+T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1327 ITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|384500232|gb|EIE90723.1| hypothetical protein RO3G_15434 [Rhizopus delemar RA 99-880]
Length = 1239
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 26/240 (10%)
Query: 78 FNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRS 136
FN L+ EA T S P Y+RLE++GD++L+ L+ + + YP+ PG +T L+
Sbjct: 966 FNKPLLVVEALTHASLPNSTSPCYQRLEFLGDAILDFLVIRYLYTKYPDAEPGQITTLKD 1025
Query: 137 ANVNTEKLARVAIKLGLHKYLRHNKP-------LLEEQIREFSE---AILDYPLHSNGLV 186
+ VN L + + GLHK++ H LEE+++E + A+ +Y N
Sbjct: 1026 SCVNNHVLGIICLNNGLHKHIIHYSGKLVRAINTLEEEVQELKDTGKAVGEYWADMN--- 1082
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETLKTHPVTELYE- 241
PKVL+D+VES +GAVF+D + +F + P+ ++PE ++ HP+ +L
Sbjct: 1083 -IPKVLSDVVESMLGAVFVDAKFDLSPCAALFDKWFVPIFDANVTPELVRIHPMRKLLTD 1141
Query: 242 ----VCQKNKLKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
C+ L+ + S IF+ D+ L GA K +A RAA+ A +E
Sbjct: 1142 LQAFGCEGFMLRNHSTGESGPTSQKCVIFLHDKSLACGADWNIK-VARRRAAEKASQRLE 1200
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA+T PS YERLE +GDS+L + T + +P G L LR V L
Sbjct: 782 EAYTMPSASMEM-DYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVVCNRALY 840
Query: 146 RVAIKLGLHKYL-------RHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVES 198
R A +L ++Y+ RH +P + ++ + L + L D K LADIVE+
Sbjct: 841 RAAKRLKFYRYVTSQAFNRRHWRPPHFTSTADNADTM--ESLKKHKLSD--KTLADIVEA 896
Query: 199 TIGAVFI 205
++GA ++
Sbjct: 897 SLGAAYL 903
>gi|425772078|gb|EKV10503.1| RNA helicase/RNAse III, putative [Penicillium digitatum Pd1]
gi|425777255|gb|EKV15436.1| RNA helicase/RNAse III, putative [Penicillium digitatum PHI26]
Length = 1372
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 15/181 (8%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY F LL AFT PS P + Y+RLEY+GD++L+++ + F +P P
Sbjct: 1192 EKVGYEFKYPRLLRSAFTHPSYPLTWAKVPCYQRLEYLGDALLDMVCVEHLFHRFPTRDP 1251
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV-- 186
LT + A V+ + L +A+KLGLH +L+H L Q +++E + SNG V
Sbjct: 1252 QWLTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEELQLAESESNGEVNY 1311
Query: 187 -----DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPV 236
D+PK L D++E+ +GA+F+D + ++ FK + P ++ HP
Sbjct: 1312 WLSTSDSPKCLPDMLEAYLGAIFVDSSFDFTVIEAFFKRHILPFFHDMSIYDTFANRHPT 1371
Query: 237 T 237
T
Sbjct: 1372 T 1372
>gi|393215463|gb|EJD00954.1| ribonuclease III [Fomitiporia mediterranea MF3/22]
Length = 1411
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 19/198 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E I+G++FN+ +LL +A T S SYERLE++GD++L+ L+ + + +L PG
Sbjct: 1118 EAIIGHQFNHPHLLAQALTHASIHGNEMTSYERLEFIGDAILDFLVIRHIYDRDSSLSPG 1177
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL--HSNGL-- 185
+LT L+ A V+ LA V + GLH++L LE+ I+ ++ + L H
Sbjct: 1178 ALTLLKGAMVSNAALAAVCVWSGLHEHLLFESSALEKSIQSYAVELEQRQLAEHEQAARE 1237
Query: 186 ----------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETL 231
V+ PK L+D+VES GAV++ N S K F ++L P I+ TL
Sbjct: 1238 DRQPGQYWVDVEPPKALSDVVESIFGAVYVSDNFSPIGAEKFFDKVLAPFYDQHITLHTL 1297
Query: 232 KTHPVTELYEVCQKNKLK 249
HP L+E+ Q +
Sbjct: 1298 SHHPTKILFELFQSQGCQ 1315
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 92 SCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAI 149
S P F YERLE +GD+ L L + F +P L G+L R ++ L R A
Sbjct: 857 SSPAAFVDVDYERLELLGDAYLKYLSSVYLFVTFPTLHEGALHVSRQRIISNRSLLRNAN 916
Query: 150 KLGLHKYLRHNKPL 163
+ GL +Y++ +KPL
Sbjct: 917 RCGLPQYIQ-SKPL 929
>gi|74204500|dbj|BAE23515.1| unnamed protein product [Mus musculus]
Length = 514
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 27/195 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 262 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 321
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 322 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 377
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 378 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 437
Query: 228 PETLKTHPVTELYEV 242
+ PV EL E+
Sbjct: 438 SANVPRSPVRELLEM 452
>gi|302819687|ref|XP_002991513.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
gi|300140715|gb|EFJ07435.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
Length = 850
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 115/246 (46%), Gaps = 44/246 (17%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSA-----NVN 140
EA T C E F SYE LE +GDS L ++T++ F +Y G L+ R+ ++
Sbjct: 573 EAITSKKCHEEF-SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNTYATKNSIL 631
Query: 141 TEKLARVAIKLGLHK------------YLRHNKPLLEE---------------------- 166
LAR + L +H+ Y N+ LL E
Sbjct: 632 PTGLARACLPL-IHQNASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQHGSVELD 690
Query: 167 -QIREFSEAILDYPLHSN-GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP 224
+IR+F + + + P S + +PKVL D++ES GA+F+D N ++ +W+V LL P
Sbjct: 691 CEIRKFVQNVKEKPDASCFDDLSSPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSP 750
Query: 225 MISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHI-FIEDQLLGRGAYAPKKEIA 283
+++P TL+ HPV L E+C + +KV F +T + F E+ L+ P+K
Sbjct: 751 LVTPATLRFHPVRILMELCARKGMKVSFFRTEATTTEVRVTFGEESLVETSQEKPRKSAK 810
Query: 284 HNRAAK 289
+ A K
Sbjct: 811 IDAALK 816
>gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum]
gi|333440972|gb|AEF32761.1| DCR-1 [Ascaris suum]
Length = 1970
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 26/253 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF ++ L +AFT S + + Y+RLE++GD+VL+ ++T+ F P
Sbjct: 1707 EDSICYRFKDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHPRQYSP 1766
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI---------REFSEAILDYP 179
G LT LRSA VN A +A+K HK+ P L I + FS A +
Sbjct: 1767 GVLTDLRSALVNNTIFASLAVKYNFHKHFVAMCPGLHHMIEKFVRLCAEKNFSGANFNAE 1826
Query: 180 LH-----------SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
++ ++ PK + DI ES GA+++D S+D+VW+VF L+K I
Sbjct: 1827 MYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDVVWRVFYNLMKETIE- 1885
Query: 229 ETLKTHPVTELYEVCQKNKLKVKFVDLWK--ESTAFHIFIEDQLLGR-GAYAPKKEIAHN 285
E P + + E+ + + +F L + E+ + ++ Q R IA
Sbjct: 1886 ECCNNPPKSPIRELLELEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYRIAKC 1945
Query: 286 RAAKDALNNIERL 298
AAK AL + +L
Sbjct: 1946 TAAKRALRYLRKL 1958
>gi|440468299|gb|ELQ37466.1| RNase3 domain-containing protein [Magnaporthe oryzae Y34]
gi|440485699|gb|ELQ65629.1| RNase3 domain-containing protein [Magnaporthe oryzae P131]
Length = 1658
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 27/196 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+GYRF N LL AF PS P ++ SY+RLE++GDS+L+++ F +P+ P
Sbjct: 1250 MGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHPDKDPQW 1309
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV---- 186
LT + A V+ + VA+ LG H++L H +P L I E++E + + L
Sbjct: 1310 LTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQLAVRRG 1369
Query: 187 ---------------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
PK L DI+E+ +GA+F+D V F +KP + ++
Sbjct: 1370 QREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPYFADMSI 1429
Query: 232 -----KTHPVTELYEV 242
HPVT + +
Sbjct: 1430 YDMYSSKHPVTHITSI 1445
>gi|346970337|gb|EGY13789.1| RNase3 domain-containing protein [Verticillium dahliae VdLs.17]
Length = 1563
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 67 NLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLY 123
+L +E +GY F + LL AF PS P +F S Y+RLE++GD++L+++ F +
Sbjct: 1272 SLQIKEQMGYEFKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKF 1331
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL------- 176
P+ P LT + A V+ L ++++LG ++ + H ++ QI+++ +A+
Sbjct: 1332 PDADPQWLTEHKMAMVSNHFLGSLSVELGFYRRVLHFNSIMANQIKDYVDALTHARQEAE 1391
Query: 177 -----------DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM 225
DY L+ + PK L+D+VE+ IGA+F+D V F++ ++P
Sbjct: 1392 AVAQISGTVSRDYWLN---VKHPPKFLSDVVEAYIGAIFVDSGYDYGQVQAFFEKHIRPF 1448
Query: 226 ISPETL-----KTHPVTELYEVCQKN 246
+ L +HPVT L + Q++
Sbjct: 1449 FADMALYDSFASSHPVTTLARMMQQD 1474
>gi|389633725|ref|XP_003714515.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
gi|158706447|sp|A4RKC3.2|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL1; Includes: RecName:
Full=ATP-dependent helicase DCL1
gi|351646848|gb|EHA54708.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
Length = 1591
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 27/196 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+GYRF N LL AF PS P ++ SY+RLE++GDS+L+++ F +P+ P
Sbjct: 1250 MGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHPDKDPQW 1309
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV---- 186
LT + A V+ + VA+ LG H++L H +P L I E++E + + L
Sbjct: 1310 LTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQLAVRRG 1369
Query: 187 ---------------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
PK L DI+E+ +GA+F+D V F +KP + ++
Sbjct: 1370 QREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPYFADMSI 1429
Query: 232 -----KTHPVTELYEV 242
HPVT + +
Sbjct: 1430 YDMYSSKHPVTHITSI 1445
>gi|351701180|gb|EHB04099.1| Endoribonuclease Dicer [Heterocephalus glaber]
Length = 1935
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1683 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1742
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1743 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1798
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1799 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1858
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1859 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1914
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1915 SAAARRALRSLK 1926
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 54 GDESESESLPNANNLDEEEILGYRFN----NKNLLEEAFTDPSCPERFFSYERLEYVGDS 109
G +SL + + ++ LGY N L+ +A T + + F + ERLE +GDS
Sbjct: 1263 GTTDAFQSLKDRMDSEQSPSLGYSSRTLGPNPGLILQALTLSNASDGF-NLERLEMLGDS 1321
Query: 110 VLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1322 FLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|355683929|gb|AER97238.1| dicer 1, ribonuclease type III [Mustela putorius furo]
Length = 560
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 27/195 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 309 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 368
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 369 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 424
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 425 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 484
Query: 228 PETLKTHPVTELYEV 242
+ PV EL E+
Sbjct: 485 SANVPRSPVRELLEM 499
>gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica]
Length = 1519
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 31/202 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPN--L 126
E+ +GY F NK L ++ T S + Y+RLE++GD+VL+ L+T+ F +P
Sbjct: 1253 EKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITR-HLFDHPTKRF 1311
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF------------SEA 174
PG LT LR+A VN A +A+K HKYL P L IR++ EA
Sbjct: 1312 SPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEGMEA 1371
Query: 175 ILD------------YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
+L + ++ PKVL DI ES GA+++D ++D VW V++ +L
Sbjct: 1372 VLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYRPML 1431
Query: 223 KPMISPETLK--THPVTELYEV 242
+ I ++ P+ EL E+
Sbjct: 1432 QKYIDKYSINPPRSPIRELLEL 1453
>gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
gi|160285503|pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
gi|160285504|pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
Length = 200
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 25/177 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 12 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 71
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 72 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 127
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 128 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 184
>gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus]
gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct]
Length = 1906
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1654 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1713
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1714 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 1769
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1830 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1885
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1886 SAAARRALRSLK 1897
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1300 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1355
>gi|193786026|dbj|BAG51002.1| unnamed protein product [Homo sapiens]
Length = 554
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 27/195 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 302 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 361
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 362 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 417
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 418 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 477
Query: 228 PETLKTHPVTELYEV 242
+ PV EL E+
Sbjct: 478 SANVPRSPVRELLEM 492
>gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus]
Length = 1908
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1656 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1715
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1716 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 1771
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1772 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1831
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1832 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1887
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1888 SAAARRALRSLK 1899
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1302 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1357
>gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens]
Length = 820
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 27/195 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 568 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 627
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--V 186
G LT LRSA VN A +A+K HKY + P L I +F + + L N + +
Sbjct: 628 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 683
Query: 187 DA-----------------PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
D+ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 684 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 743
Query: 228 PETLKTHPVTELYEV 242
+ PV EL E+
Sbjct: 744 SANVPRSPVRELLEM 758
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 208 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 263
>gi|257051057|sp|Q8R418.3|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName:
Full=Double-strand-specific ribonuclease mDCR-1
Length = 1916
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 1779
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1840 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1895
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1896 SAAARRALRSLK 1907
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|348554455|ref|XP_003463041.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Cavia
porcellus]
Length = 1929
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1677 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1736
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1737 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1792
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1793 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1852
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1853 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1908
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1909 SAAARRALRSLK 1920
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL]
gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL]
Length = 222
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 27/227 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+ LGY+F +KNLL A T S + YERLE++GD+ L L ++K + +P L G
Sbjct: 5 EKALGYKFEDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSEG 64
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT +R+A V ++ L++VA KL L ++ K E++ +F E
Sbjct: 65 ELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGK---REKMEKFYE--------------NK 107
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET---LKTHPVTELYEVCQK- 245
+LAD++E+ GA+FI+ S D V K+ LLKP I L T+L E+ Q+
Sbjct: 108 SILADVLEALFGAIFIE--SGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQRE 165
Query: 246 NKLKVKFVD---LWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ K+ + D L K+ +FIE + + G KKE + A K
Sbjct: 166 GQKKIVYKDCEILEKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYK 212
>gi|431839251|gb|ELK01178.1| Endoribonuclease Dicer [Pteropus alecto]
Length = 1921
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1669 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1784
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1845 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1900
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1901 SAAARRALRSLK 1912
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>gi|345803797|ref|XP_868526.2| PREDICTED: endoribonuclease Dicer isoform 4 [Canis lupus familiaris]
Length = 1923
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1786
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1847 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1902
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1903 SAAARRALRSLK 1914
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>gi|158706454|sp|Q0CW42.2|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1519
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 26/204 (12%)
Query: 60 ESLPNANNLD----EEEILGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLN 112
E P+ + +D EE LGY F LL AFT PS P R Y+ LE++GD++L+
Sbjct: 1224 EQAPDGSEIDLCRRVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLD 1283
Query: 113 LLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF- 171
++ ++ F +P+ P LT + A V+ + L +A+KLGLH +L + L+ QI +
Sbjct: 1284 MVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHYA 1343
Query: 172 ---------SEAILDYPLHSNGLVDAPKV-LADIVESTIGAVFIDCNSSIDIVWKVFKEL 221
S+ +DY + D PKV L D+VE+ +GAVF+D N + V F++
Sbjct: 1344 EEAQAAASQSDVAVDYWTLTQ---DPPKVCLPDMVEAYLGAVFVDSNFRFEEVEVFFQQH 1400
Query: 222 LKPMISPETL-----KTHPVTELY 240
+KP + HP T L+
Sbjct: 1401 IKPYFHDMAIYDTFANRHPTTFLH 1424
>gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus]
Length = 1917
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1665 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 1780
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1840
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1841 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1896
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1897 SAAARRALRSLK 1908
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus]
Length = 1916
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 1779
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1840 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1895
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1896 SAAARRALRSLK 1907
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108]
gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108]
Length = 222
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 27/227 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+ LGY+F +KNLL A T S + YERLE++GD+ L L+++K F +P+L G
Sbjct: 5 EKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPDLSEG 64
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT +R+A V ++ L+ VA KL L ++ K E++ +F H N
Sbjct: 65 ELTNIRAAVVCSQTLSEVAEKLNLKNHIIFGK---REKMEKF---------HEN-----K 107
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET---LKTHPVTELYEVCQK- 245
+LAD++E+ GA+FI+ S D + K+ LLKP I L T+L E+ Q+
Sbjct: 108 SILADVLEAIFGAIFIE--SGFDKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQRE 165
Query: 246 NKLKVKFVD---LWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
K K+ + D + K+ +F+E + + G KKE + A K
Sbjct: 166 GKKKIVYKDCEIIEKKYFKSELFVEGKKVSEGYGTSKKEAQQDAAYK 212
>gi|74318104|ref|YP_315844.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
gi|90101653|sp|Q3SH50.1|RNC_THIDA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|74057599|gb|AAZ98039.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
Length = 226
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LGY F+ LL++A T S + ERLE++GDSVLN + + + +P+LP GS
Sbjct: 11 QQALGYTFSRSGLLQQALTHRSYGA--LNNERLEFLGDSVLNCSVARALYDAFPDLPEGS 68
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V E LA +A L L LR + L+ +G P
Sbjct: 69 LSRLRANLVRQETLAEIAGALRLGDSLRLGEGELK-----------------SGGFRRPS 111
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD +ES GAVF+D + D +V + L P+++ P+ P T L E+ Q +
Sbjct: 112 ILADALESLFGAVFLD--AGFDEAQRVVRRLFDPLVAQIDPKASGKDPKTRLQEILQSRR 169
Query: 248 L 248
L
Sbjct: 170 L 170
>gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae]
Length = 1863
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 117/260 (45%), Gaps = 31/260 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GYRF ++ L +AFT S + Y+RLE++GD+VL+ ++T+ F P
Sbjct: 1601 EEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDVRQYSP 1660
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN----- 183
G LT LRSA VN A +A+K K+ P L I +F + D +N
Sbjct: 1661 GVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDTNFNTEM 1720
Query: 184 --------------GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE 229
V+ PK L D+ ES GA+++D ++D W+V L+K I
Sbjct: 1721 YMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMKGTIE-T 1779
Query: 230 TLKTHPVTELYEVCQKNKLKVKFVDLWK--ESTAFHIFIE----DQLLGRGAYAPKKEIA 283
P + + E+ + K +F + + ES + ++ + G G IA
Sbjct: 1780 CCANPPRSPIRELMELEGTKARFSKMERILESGKVRVTVDVGNNMRFTGMGR---NYRIA 1836
Query: 284 HNRAAKDALNNIERLLNEKR 303
AAK AL + ++ ++R
Sbjct: 1837 KATAAKRALKYLHQMEEQRR 1856
>gi|391328911|ref|XP_003738926.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
Length = 1347
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 21/172 (12%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERF----FSYERLEYVGDSVLNLLLTKEQFFLY 123
L +E LGY F N+ L+ EA T S R+ SYERLE++GD+V++ L++K +
Sbjct: 1172 LTVQETLGYIFQNELLVLEAITHKS--YRYNRLTRSYERLEFLGDAVIDYLISKYIYTAD 1229
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----SEAILDY 178
+L PG LT +R++ V+ A + + LH ++H+ PLL + F +E +D
Sbjct: 1230 SDLNPGQLTDVRASLVSNNTFAAIIVDNKLHTVMQHHSPLLLKLTNRFVEYRETEKRIDI 1289
Query: 179 PLHSNGL----------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
H G VD PK L D++ES +GAVF+D +D+VW V +
Sbjct: 1290 LAHMMGEEDEDLEDLEQVDIPKPLGDLMESLMGAVFLDSGKDLDVVWAVLSK 1341
>gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus]
Length = 1475
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1223 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1282
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1283 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 1338
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1339 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1398
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1399 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1454
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1455 SAAARRALRSLK 1466
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 869 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 924
>gi|392567716|gb|EIW60891.1| hypothetical protein TRAVEDRAFT_146565 [Trametes versicolor FP-101664
SS1]
Length = 1459
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 22/206 (10%)
Query: 60 ESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKE 118
+S P+ L +E LGYRF + LL EA T PS SY+RLE++GD+++++++T+
Sbjct: 1108 KSEPSPLFLTLQEALGYRFEHGQLLLEAVTHPSFGSADSSSYQRLEFLGDALIDMVVTEY 1167
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNK-----------PLLEE 166
+ +P G L+ RS V LA +A+ +LGLHK L N P+LEE
Sbjct: 1168 LYKKFPEATSGQLSWARSRAVCGTALASLAVNRLGLHKLLLINNVELSIAIGRYVPILEE 1227
Query: 167 QIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
E E ILD H D PK L+D+ ES +GA+F+DC+ + D V + +++ +I
Sbjct: 1228 ITNE--EIILDGWKH-----DPPKALSDVFESVMGALFVDCDYNYDKAAAVIEMVMEDLI 1280
Query: 227 SP--ETLKTHPVTELYEVCQKNKLKV 250
L PV++L K+ +
Sbjct: 1281 GALRPDLPRDPVSQLMVWVAKSGCRC 1306
>gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469]
gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469]
Length = 243
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 108/236 (45%), Gaps = 36/236 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E I G+ F NK+L+E A T PS E SYERLE++GDS+L ++ E F YP++
Sbjct: 11 EAICGHTFINKDLIEAALTHPSAVEGKPVSASYERLEFLGDSILGAIIATELFERYPDMD 70
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTRL+ + V+ L+ V+ LG+ PL+ I E G
Sbjct: 71 EGQLTRLKISLVSGHTLSIVSDTLGV-------SPLIVMGISE----------KGTGKRG 113
Query: 188 APKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISP--ETLKTHPVTELYEVC 243
L ++ ES +GA+++D + D V + L P ISP P + L E
Sbjct: 114 MKSALENVYESIVGALYLDAGFEPTRDFVIRT----LGPHISPTLAVRSVSPKSRLQEAV 169
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
Q L ES H +F++ +GRG P K+ A + AA+DAL
Sbjct: 170 QAQGKATPEYKLIGESGPAHTPTFTAVVFVDGLKVGRG-QGPSKKAAESEAAQDAL 224
>gi|444518375|gb|ELV12129.1| Endoribonuclease Dicer [Tupaia chinensis]
Length = 974
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 722 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 781
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 782 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 837
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 838 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 897
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 898 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 953
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 954 SAAARRALRSLK 965
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 361 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 416
>gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus]
Length = 1906
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 27/195 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1654 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1713
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1714 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 1769
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829
Query: 228 PETLKTHPVTELYEV 242
+ PV EL E+
Sbjct: 1830 SANVPRSPVRELLEM 1844
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1300 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1355
>gi|403274211|ref|XP_003928879.1| PREDICTED: endoribonuclease Dicer isoform 1 [Saimiri boliviensis
boliviensis]
gi|403274213|ref|XP_003928880.1| PREDICTED: endoribonuclease Dicer isoform 2 [Saimiri boliviensis
boliviensis]
Length = 1922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|194225335|ref|XP_001496219.2| PREDICTED: endoribonuclease Dicer [Equus caballus]
Length = 1785
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1533 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1592
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1593 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1648
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1649 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1708
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1709 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1764
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1765 SAAARRALRSLK 1776
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1175 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1230
>gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus]
Length = 1922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|383872414|ref|NP_001244801.1| endoribonuclease Dicer [Macaca mulatta]
gi|380811118|gb|AFE77434.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
gi|380811120|gb|AFE77435.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
gi|380811122|gb|AFE77436.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
gi|380811124|gb|AFE77437.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
gi|383417045|gb|AFH31736.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
Length = 1920
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1668 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1727
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1728 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1783
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1784 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1843
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1844 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1899
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1900 SAAARRALRSLK 1911
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1308 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1363
>gi|355778829|gb|EHH63865.1| hypothetical protein EGM_16920 [Macaca fascicularis]
Length = 1910
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1658 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1717
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1718 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1773
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1774 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1833
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1834 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1889
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1890 SAAARRALRSLK 1901
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1298 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1353
>gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes]
gi|410048689|ref|XP_003952618.1| PREDICTED: endoribonuclease Dicer [Pan troglodytes]
gi|410219112|gb|JAA06775.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410256210|gb|JAA16072.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410256212|gb|JAA16073.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410306234|gb|JAA31717.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410306236|gb|JAA31718.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410351815|gb|JAA42511.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410351817|gb|JAA42512.1| dicer 1, ribonuclease type III [Pan troglodytes]
Length = 1922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|426377909|ref|XP_004055696.1| PREDICTED: endoribonuclease Dicer isoform 1 [Gorilla gorilla gorilla]
gi|426377911|ref|XP_004055697.1| PREDICTED: endoribonuclease Dicer isoform 2 [Gorilla gorilla gorilla]
gi|426377913|ref|XP_004055698.1| PREDICTED: endoribonuclease Dicer isoform 3 [Gorilla gorilla gorilla]
Length = 1922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys]
gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys]
gi|441666339|ref|XP_004091884.1| PREDICTED: endoribonuclease Dicer [Nomascus leucogenys]
Length = 1922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens]
Length = 1923
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1786
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1847 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1902
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1903 SAAARRALRSLK 1914
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens]
Length = 1924
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1672 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1731
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1732 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1787
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1788 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1847
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1848 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1903
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1904 SAAARRALRSLK 1915
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1312 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1367
>gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens]
Length = 1912
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1660 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1719
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1720 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1775
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1776 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1835
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1836 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1891
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1892 SAAARRALRSLK 1903
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1300 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1355
>gi|402877099|ref|XP_003902280.1| PREDICTED: endoribonuclease Dicer isoform 1 [Papio anubis]
gi|402877101|ref|XP_003902281.1| PREDICTED: endoribonuclease Dicer isoform 2 [Papio anubis]
gi|402877103|ref|XP_003902282.1| PREDICTED: endoribonuclease Dicer isoform 3 [Papio anubis]
Length = 1920
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1668 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1727
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1728 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1783
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1784 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1843
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1844 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1899
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1900 SAAARRALRSLK 1911
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1308 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1363
>gi|397525875|ref|XP_003832878.1| PREDICTED: endoribonuclease Dicer isoform 1 [Pan paniscus]
gi|397525877|ref|XP_003832879.1| PREDICTED: endoribonuclease Dicer isoform 2 [Pan paniscus]
Length = 1922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|296475171|tpg|DAA17286.1| TPA: endoribonuclease Dicer [Bos taurus]
Length = 1922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1786
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ + ++ + + + + +++G+G + IA
Sbjct: 1847 SANVPRSPVRELLEM----EPEITKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1903 SAAARRALRSLK 1914
>gi|384494893|gb|EIE85384.1| hypothetical protein RO3G_10094 [Rhizopus delemar RA 99-880]
Length = 407
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 93/167 (55%), Gaps = 17/167 (10%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+LGY+F N L++EA T S + YERLE++GD++L+ +T+ + +P PG
Sbjct: 238 EMLGYQFKNYLLVQEALTHGSVMDSLVPCYERLEFLGDAILDFFVTQYIYQKHPTAAPGI 297
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL-----------DYP 179
L LR ++VN L+ V + +GL K++ H + I + +EAI +Y
Sbjct: 298 LHNLRKSSVNHHILSAVCLNMGLDKHIIHVSAEIAASILK-AEAIHKDMQSKGKDTDEYW 356
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
LH N PKVL+D++ES +GA+ +D I+ V + F+ KP++
Sbjct: 357 LHLN----PPKVLSDVIESLMGAILVDSGFDINQVEEFFERWFKPIL 399
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 26/149 (17%)
Query: 77 RFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRS 136
+F + L+ EAFT PS R YERLE++GD+VL +++ + YP LT LR
Sbjct: 57 QFIDDELMLEAFTSPSA-NRKQDYERLEFLGDAVLKFIVSSYLYAKYPTYSEAELTSLRQ 115
Query: 137 ANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV----- 191
+ + A +A L LH+Y+ + + +R F P H ++D+ K+
Sbjct: 116 VMTSNKSFANIAKDLKLHRYI-----ISQSTVRRFWR-----PPHFQNVLDSNKIKHWLT 165
Query: 192 --------LADIVESTIGAVFIDCNSSID 212
LADI+EST+GA F+ + SID
Sbjct: 166 HHLVSDNTLADIIESTVGAAFL--SQSID 192
>gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens]
gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
gi|404312696|ref|NP_001258211.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
gi|257051056|sp|Q9UPY3.3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with
RNase motif; Short=Helicase MOI
gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens]
gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens]
gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens]
gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct]
Length = 1922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer isoform 1 [Pongo abelii]
gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer isoform 2 [Pongo abelii]
gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer isoform 3 [Pongo abelii]
Length = 1922
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus]
gi|257051053|sp|Q6TUI4.3|DICER_BOVIN RecName: Full=Endoribonuclease Dicer
gi|38679195|gb|AAR26432.1| dicer [Bos taurus]
Length = 1923
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1786
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ + ++ + + + + +++G+G + IA
Sbjct: 1847 SANVPRSPVRELLEM----EPEITKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1903 SAAARRALRSLK 1914
>gi|380481939|emb|CCF41547.1| RNase3 domain-containing protein [Colletotrichum higginsianum]
Length = 1588
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 29/204 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F + LL AF PS P E Y+RLE++GD++L+++ F +P+ P
Sbjct: 1301 LGYEFKSPALLRSAFKHPSYPRAYENLPDYQRLEFLGDALLDMVCVDFLFHKFPDADPQW 1360
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD--- 187
LT ++A V+ + LA + +KLGLHK++ L Q +F ++ +G D
Sbjct: 1361 LTEHKTAMVSNQFLASLCVKLGLHKHVLSGHASLLNQTHDFVVSLES--AKKDGEADGTF 1418
Query: 188 ----------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----K 232
APK L+D+VE+ IGA+FID + V F ++P + L
Sbjct: 1419 TQAYWINVQHAPKYLSDVVEAYIGAIFIDSGYDYNHVRVFFDTHIRPFFTDMALYDSFAS 1478
Query: 233 THPVTELYEV------CQKNKLKV 250
HPVT L + CQ+ +L V
Sbjct: 1479 RHPVTNLAHILQDGFGCQEWRLMV 1502
>gi|443925066|gb|ELU43989.1| type III restriction enzyme [Rhizoctonia solani AG-1 IA]
Length = 1442
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 101/176 (57%), Gaps = 7/176 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE LGY+F N +L+ EAFT + + SY RLE++GDS+ +L + K + +P + PG
Sbjct: 1173 EEKLGYKFKNASLVAEAFTHTAYDLSQGPSYNRLEFLGDSLFDLYVVKFMYLKFPKMTPG 1232
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI----LDYPLHSNGL 185
++ RS VN ++A+ L LHK++ + L++ + F++ + L+ L
Sbjct: 1233 QMSWARSRLVNASTFGKLAVGLELHKHILTSSANLQKAVASFAQEVEEISLEEILQICWK 1292
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPVTEL 239
+DAPK ++D+ E+ GA+++D + ++++ ++ ++ ++ T ++ P +EL
Sbjct: 1293 IDAPKAISDVFEAIFGAIYVDSSFNLELTFEHIHRVMANIMEYVTPVMQGDPTSEL 1348
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
F Y+RLE +GDSVL + + F Y G L+ ++ + V+ L RV + L ++L
Sbjct: 993 FDYQRLETIGDSVLKVSMCTHLFIKYQGHHEGQLSAMKDSVVSNANLMRVGRQSPLSRFL 1052
>gi|426248555|ref|XP_004018028.1| PREDICTED: endoribonuclease Dicer [Ovis aries]
Length = 1922
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 49 VNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGD 108
E D + SE P+ + LG N L+ +A T + + F + ERLE +GD
Sbjct: 1267 AGEAPPDRTASEQSPSPGH--SSRTLG---PNPGLILQALTLSNASDGF-NLERLEMLGD 1320
Query: 109 SVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
S L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 222
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 29/228 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E LGY F +KNLL A T S + YER E++GD+ L L ++K F +P L G
Sbjct: 5 ERALGYTFKDKNLLRLALTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPELSEG 64
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT +R+A V ++ L++VA KL L ++ K E++ +F H N
Sbjct: 65 ELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGK---REKMEKF---------HEN-----K 107
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET---LKTHPVTELYEVCQK- 245
+LAD++E+ GA+FI+ S DIV K+ LLKP I L T+L E+ Q+
Sbjct: 108 SILADVLEAIFGAIFIE--SGFDIVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQRE 165
Query: 246 -NKLKVKFVD---LWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
NK K+ + D + K+ +FIE + + G KKE + A K
Sbjct: 166 GNK-KIVYKDCEIIEKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYK 212
>gi|440907259|gb|ELR57423.1| Endoribonuclease Dicer [Bos grunniens mutus]
Length = 1922
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 54 GDESESESLPNANNLDEEEILGYRFN----NKNLLEEAFTDPSCPERFFSYERLEYVGDS 109
G E+ P+ ++ GY N L+ +A T + + F + ERLE +GDS
Sbjct: 1263 GTAETGEAPPDRTASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGF-NLERLEMLGDS 1321
Query: 110 VLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1322 FLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|395827764|ref|XP_003787065.1| PREDICTED: endoribonuclease Dicer isoform 1 [Otolemur garnettii]
gi|395827766|ref|XP_003787066.1| PREDICTED: endoribonuclease Dicer isoform 2 [Otolemur garnettii]
Length = 1921
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1669 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1784
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1844
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1845 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1900
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1901 SAAARRALRSLK 1912
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 55 DESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLL 114
D +SE P+A LG N L+ +A T + + F + ERLE +GDS L
Sbjct: 1271 DRMDSEQSPSAGY--SSRTLG---PNPGLILQALTLSNASDGF-NLERLEMLGDSFLKHA 1324
Query: 115 LTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
+T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1325 ITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1363
>gi|384915457|ref|ZP_10015677.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
gi|384527143|emb|CCG91546.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
Length = 242
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 47/248 (18%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
EE LG+ F N LLEEA T PS ++RLE++GD+VL L +T++ + ++P+
Sbjct: 7 EERLGHTFRNNQLLEEALTHPSYFVESMKTTGKDFQRLEFLGDAVLGLAITEKLYEIFPS 66
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G LT+LR+ V+ + L+ ++ LG+ KYLR K + Q R
Sbjct: 67 FDEGKLTKLRAKLVSRKVLSPLSSSLGIGKYLRLGKGEEKNQGR---------------- 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE------- 238
P LA+ +ES IGA+++D W+ K + + SP L+ H
Sbjct: 111 -TKPSNLANALESVIGALYLDGG------WEKTKSFVFQLFSPLFLELHKDPSAFLEYEN 163
Query: 239 ----LYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRA 287
L E QK +++ + ES H + ++Q+LG+G+ KKE A RA
Sbjct: 164 SKGLLQEFLQKKGMELPVYRIVMESGEAHNKWYEVEVLWKNQVLGKGSGKSKKE-AELRA 222
Query: 288 AKDALNNI 295
AK+A +
Sbjct: 223 AKEAFEKL 230
>gi|167046022|gb|ABZ10542.1| dicer-like protein B [Placozoa sp. DMJ-2008]
Length = 357
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 24/180 (13%)
Query: 58 ESESLPNANNL-DEEEILGYRFNNKNLLEEAFTDPS-----CPERFFSYERLEYVGDSVL 111
E + NA+NL D E +LGY F ++ LL A T + E Y+RLE++GD++L
Sbjct: 174 EISKIYNAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAIL 233
Query: 112 NLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
++ + + N P L A++ E LA + + G+HKY +N P L QI +
Sbjct: 234 QYIVVRHCYHANNNYKPADLHDFVEASLQNESLAAMTMVYGIHKYFFYNSPSLFSQINQL 293
Query: 172 SEAILDYP--------------LHSNGLVDA---PKVLADIVESTIGAVFIDCNSSIDIV 214
+ I+D ++SN L D PK L D+ ES IGA+FIDC SI++V
Sbjct: 294 LQ-IVDTNEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVV 352
>gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon
pisum]
Length = 1630
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E +GY F +K+LL +A T P+ F Y+RLE++GD++L+ L+T + PG
Sbjct: 1377 ERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYHKTPG 1436
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA--------------- 174
+T +RS+ VN A ++ ++GLH+++ + E I F E
Sbjct: 1437 EITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLYL 1496
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP--ETLK 232
I + ++ VD PKVL D+ ES I A+++DCN ++ VW + L+ I + +
Sbjct: 1497 IEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFCDNVP 1556
Query: 233 THPVTELYEV 242
+P+ L+E
Sbjct: 1557 KNPIRILHET 1566
>gi|71051733|gb|AAH98796.1| Dicer1 protein [Rattus norvegicus]
Length = 401
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 149 EKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 208
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 209 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 264
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 265 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 324
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +L+G+G + IA
Sbjct: 325 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVELVGKGKFKGVGRSYRIAK 380
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 381 SAAARRALRSLK 392
>gi|371486410|gb|AEX31250.1| Dicer 2 [Aedes albopictus]
Length = 1659
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 95/201 (47%), Gaps = 41/201 (20%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ILGY+F ++ L +A T S P SY++LE++GD+VL+ L++ F P + P
Sbjct: 1406 ESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSP 1465
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYL------------------RHNKP-------- 162
G LT LRSA VN LA + ++ GLH Y+ NK
Sbjct: 1466 GQLTDLRSALVNNITLACLLVRHGLHLYILAESASFSDTVNKFVMFQEQNKHEITDQVNL 1525
Query: 163 LLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
L+EE R+ +E VD PK L D+ ES + AVF+D + + W+V ++
Sbjct: 1526 LVEESDRKMAE-----------FVDVPKALGDVFESLVAAVFLDSGNDFAVTWRVIYGMM 1574
Query: 223 --KPMISPETLKTHPVTELYE 241
+ M E V +LYE
Sbjct: 1575 GNEIMTFTENTPIQIVRQLYE 1595
>gi|371486404|gb|AEX31247.1| Dicer 2 isoform A [Aedes albopictus]
gi|371486406|gb|AEX31248.1| Dicer 2 isoform B [Aedes albopictus]
Length = 1659
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 95/201 (47%), Gaps = 41/201 (20%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ILGY+F ++ L +A T S P SY++LE++GD+VL+ L++ F P + P
Sbjct: 1406 ESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSP 1465
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYL------------------RHNKP-------- 162
G LT LRSA VN LA + ++ GLH Y+ NK
Sbjct: 1466 GQLTDLRSALVNNITLACLLVRHGLHLYILAESASFSDTVNKFVMFQEQNKHEITDQVNL 1525
Query: 163 LLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
L+EE R+ +E VD PK L D+ ES + AVF+D + + W+V ++
Sbjct: 1526 LVEESDRKMAE-----------FVDVPKALGDVFESLVAAVFLDSGNDFAVTWRVIYGMM 1574
Query: 223 --KPMISPETLKTHPVTELYE 241
+ M E V +LYE
Sbjct: 1575 GNEIMTFTENTPIQIVRQLYE 1595
>gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon
pisum]
Length = 1648
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E +GY F +K+LL +A T P+ F Y+RLE++GD++L+ L+T + PG
Sbjct: 1395 ERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYHKTPG 1454
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA--------------- 174
+T +RS+ VN A ++ ++GLH+++ + E I F E
Sbjct: 1455 EITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLYL 1514
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP--ETLK 232
I + ++ VD PKVL D+ ES I A+++DCN ++ VW + L+ I + +
Sbjct: 1515 IEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFCDNVP 1574
Query: 233 THPVTELYEV 242
+P+ L+E
Sbjct: 1575 KNPIRILHET 1584
>gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon
pisum]
Length = 1691
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E +GY F +K+LL +A T P+ F Y+RLE++GD++L+ L+T + PG
Sbjct: 1438 ERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYHKTPG 1497
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA--------------- 174
+T +RS+ VN A ++ ++GLH+++ + E I F E
Sbjct: 1498 EITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLYL 1557
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP--ETLK 232
I + ++ VD PKVL D+ ES I A+++DCN ++ VW + L+ I + +
Sbjct: 1558 IEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFCDNVP 1617
Query: 233 THPVTELYEV 242
+P+ L+E
Sbjct: 1618 KNPIRILHET 1627
>gi|115437482|ref|NP_001043306.1| Os01g0551100 [Oryza sativa Japonica Group]
gi|75105855|sp|Q5JK90.1|RTL1_ORYSJ RecName: Full=Ribonuclease 3-like protein 1; AltName:
Full=Ribonuclease III-like protein 1; Short=RNase
III-like protein 1
gi|57900069|dbj|BAD88131.1| unknown protein [Oryza sativa Japonica Group]
gi|57900480|dbj|BAD87969.1| unknown protein [Oryza sativa Japonica Group]
gi|113532837|dbj|BAF05220.1| Os01g0551100 [Oryza sativa Japonica Group]
gi|215695480|dbj|BAG90671.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 256
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 113/198 (57%), Gaps = 12/198 (6%)
Query: 70 EEEILGYRFNNKN--LLEEAFTDPSCPERFFS----YERLEYVGDSVLNLLLTKEQFFLY 123
E + GY F + LLE+A T P ++RLE++GD+ L L +
Sbjct: 25 ERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDD 84
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
P L G LT LRSANV+T+KLARVA+ + R+N + ++ F++++ + P +S
Sbjct: 85 PGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSV-EGP-YS 142
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
++ P+VLADIVE+ +GAV++D ++++ KV K L +P+I+ + L P + L E+
Sbjct: 143 GDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNEL 202
Query: 243 CQKNK--LKVKFVDLWKE 258
+++ L++K + W++
Sbjct: 203 GGEHREDLEIKIL-AWRK 219
>gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica]
Length = 1814
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 31/202 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPN--L 126
E+ +GY F NK L ++ T S + Y+RLE++GD+VL+ L+T+ F +P
Sbjct: 1548 EKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITR-HLFDHPTKRF 1606
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF------------SEA 174
PG LT LR+A VN A +A+K HKYL P L IR++ EA
Sbjct: 1607 SPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEGMEA 1666
Query: 175 ILD------------YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
+L + ++ PKVL DI ES GA+++D ++D VW V++ +L
Sbjct: 1667 VLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYRPML 1726
Query: 223 KPMISPETLKT--HPVTELYEV 242
+ I ++ P+ EL E+
Sbjct: 1727 QKYIDKYSINPPRSPIRELLEL 1748
>gi|406034947|emb|CCF23094.1| Dicer 2 [Blattella germanica]
Length = 1649
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 19/190 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E IL Y F +++ L +A T S P R Y+RLE++GD++L+ L+T + L P
Sbjct: 1399 ENILQYTFKDRSYLLQALTHASYTPNRVTECYQRLEFLGDAILDFLITCHIYESCGELTP 1458
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----------SEAIL- 176
G LT LRS+ VN A + ++ G HK++++ L + + F +E +L
Sbjct: 1459 GELTDLRSSLVNNVTFASLTVRYGFHKFMKYTSTRLMDMVDRFVKFQEDNGHSINEEVLI 1518
Query: 177 ---DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
+ + +D PKVL D+ ES GA+++D ++ VW+V+ L++ I + +
Sbjct: 1519 LLEETETNIAEAIDVPKVLGDLFESIAGAIYLDSGMNLKEVWRVYYRLMRKEIRTFSKEV 1578
Query: 232 KTHPVTELYE 241
PV LYE
Sbjct: 1579 PKQPVRLLYE 1588
>gi|389749088|gb|EIM90265.1| hypothetical protein STEHIDRAFT_93138 [Stereum hirsutum FP-91666 SS1]
Length = 1500
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 23/184 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+E LGY F N LL EA T PS SY+RLE++GD+V++L + + +P+ G
Sbjct: 1167 QERLGYTFRNPELLVEAMTHPSFATGGQSYQRLEFLGDAVIDLTVMSYLYNKFPSATSGK 1226
Query: 131 LTRLRSANVNTEKLARVAIK-LGLHKYLRHNK-----------PLLEEQIREFSEAILDY 178
L+ R+ V+ L+ +A+K LGLHK + N+ P LEE + + +L+
Sbjct: 1227 LSTARARAVSAPVLSSIAVKHLGLHKLMLVNETNLSIAMGKYLPTLEET--SYEDMVLNA 1284
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---MISPETLKTHP 235
H D PK ++D++ES +GAVF+D + D+ V + ++ ++SP+T K P
Sbjct: 1285 WAH-----DPPKAISDVLESLLGAVFVDSGWNWDLAQAVTEGVMNDVLELLSPDTPK-DP 1338
Query: 236 VTEL 239
V+EL
Sbjct: 1339 VSEL 1342
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG N +LL EA+T P+ ++ +R E +GDSVL L + F YP G L+
Sbjct: 969 LGLPPINTDLLIEAYTIPAA-RTGWNNQRFETLGDSVLKLCTSVHVFNKYPWRHEGQLSV 1027
Query: 134 LRSANVNTEKLARVAIKLGLHKYL 157
LR ++ L R A + L +L
Sbjct: 1028 LRQVAISNMTLLRKAKAVSLESFL 1051
>gi|371486408|gb|AEX31249.1| Dicer 2 [Aedes albopictus]
Length = 1625
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 95/201 (47%), Gaps = 41/201 (20%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ILGY+F ++ L +A T S P SY++LE++GD+VL+ L++ F P + P
Sbjct: 1372 ESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSP 1431
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYL------------------RHNKP-------- 162
G LT LRSA VN LA + ++ GLH Y+ NK
Sbjct: 1432 GQLTDLRSALVNNITLACLLVRHGLHLYILAESASFSDTVNKFVMFQEQNKHEITDQVNL 1491
Query: 163 LLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
L+EE R+ +E VD PK L D+ ES + AVF+D + + W+V ++
Sbjct: 1492 LVEESDRKMAE-----------FVDVPKALGDVFESLVAAVFLDSGNDFAVTWRVIYGIM 1540
Query: 223 --KPMISPETLKTHPVTELYE 241
+ M E V +LYE
Sbjct: 1541 GNEIMTFTENTPIQIVRQLYE 1561
>gi|167046020|gb|ABZ10541.1| dicer-like protein B [Trichoplax adhaerens]
Length = 357
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 24/180 (13%)
Query: 58 ESESLPNANNL-DEEEILGYRFNNKNLLEEAFTDPS-----CPERFFSYERLEYVGDSVL 111
E + NA+NL D E +LGY F ++ LL A T + E Y+RLE++GD++L
Sbjct: 174 EISKIYNAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAIL 233
Query: 112 NLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
++ + + N P L A++ E LA + + G+HKY +N P L QI +
Sbjct: 234 QYIVVRHCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSPSLFSQINQL 293
Query: 172 SEAILDYP--------------LHSNGLVDA---PKVLADIVESTIGAVFIDCNSSIDIV 214
+ I+D ++SN L D PK L D+ ES IGA+FIDC SI++V
Sbjct: 294 LQ-IVDTNEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVV 352
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKY- 156
F+ E LE++GDS L ++ F Y G L+ L+S V+ E L ++ IK+GL Y
Sbjct: 13 FNLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENLYQIGIKMGLPGYI 72
Query: 157 LRHN 160
+ HN
Sbjct: 73 IGHN 76
>gi|424776467|ref|ZP_18203448.1| ribonuclease III [Alcaligenes sp. HPC1271]
gi|422888287|gb|EKU30676.1| ribonuclease III [Alcaligenes sp. HPC1271]
Length = 252
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 96/204 (47%), Gaps = 28/204 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +GY F + LLE+A T S R ERLE++GDSVLN + F + + G
Sbjct: 8 EAAIGYSFKDTGLLEQALTHRSHSAR--HNERLEFLGDSVLNFTVAALLFDRFQRIDEGD 65
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +LGL YLR L E +++ +G P
Sbjct: 66 LSRLRANLVKQAALAEIATRLGLSDYLR----LGEGELK-------------SGGFRRPS 108
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNK 247
+LAD +E+ GAVF+D V +L +PM + P+TL P T L E+ Q K
Sbjct: 109 ILADALEAIFGAVFLDAG--FTQAQTVITQLYEPMLVDVDPKTLGKDPKTLLQELLQGRK 166
Query: 248 LKVKFVDLWKESTAFHIFIEDQLL 271
L + + A H DQL
Sbjct: 167 LDLPVYTVVATHGAAH----DQLF 186
>gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH]
gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH]
Length = 226
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 29/239 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+ LGY+F NK L+ EA T S + + ERLE++GD+V++L++ + F L+P G
Sbjct: 7 EKSLGYQFKNKKLITEALTHRSYKKEV-NNERLEFLGDAVMDLIVGEYLFHLFPKAEEGI 65
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L++LR+A VN + R+A +L L KYL L +N + P
Sbjct: 66 LSKLRAALVNEDSFTRLAKRLNLGKYL-----------------YLSPAEENNNGREKPS 108
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+L+ E+ IGA++++ + D+ ++ KE P+I+PE L T L E+ Q +
Sbjct: 109 ILSSAFEAVIGAIYLEAGFEKAKDVALRLLKEEF-PIITPEELLKDYKTTLQEITQAHFG 167
Query: 249 KVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN 300
V L S H +FI+D+ R A K+ A A+ ++ +++ LN
Sbjct: 168 VVPEYRLISASGPDHKKEFEIGVFIQDKEYAR-AKGKSKKTAQQEGARLTIDMLKKELN 225
>gi|402217569|gb|EJT97649.1| ribonuclease III [Dacryopinax sp. DJM-731 SS1]
Length = 1400
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 19/195 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER-FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E ILG++F N L A T S F YERLE++GD++L+ + + + + L G
Sbjct: 1104 EAILGHKFKNPFLAATALTHSSMSSTDFPCYERLEFIGDAILDFVTVRLLYMRWGELHEG 1163
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD------------ 177
LT L+ A V+ LA + LGLH Y+ H+ P L E + +++ I
Sbjct: 1164 WLTMLKGAIVSNAALAAFCVDLGLHHYIIHDSPHLVETVSSYAKEITKAKEEDLAAAAAE 1223
Query: 178 --YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETL 231
P ++ PKVL+DIVE+ +GA+++ + VF L KP +S TL
Sbjct: 1224 DRAPGEYWVTLEPPKVLSDIVEALLGAIYVSDSFDPSGYENVFDRLFKPFFMKRVSLNTL 1283
Query: 232 KTHPVTELYEVCQKN 246
HP + L+ + Q+
Sbjct: 1284 SQHPTSLLFALLQQR 1298
>gi|353236820|emb|CCA68807.1| hypothetical protein PIIN_02669 [Piriformospora indica DSM 11827]
Length = 1466
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 123/250 (49%), Gaps = 25/250 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E +G +F+ ++L +A T S YERLE++GD+VL+ L+ + F L+ L PG
Sbjct: 1170 EATVGAKFHRPHILAQALTHTSARGNDMTCYERLEFLGDAVLDFLVIQHIFDLHGRLTPG 1229
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-----LDYPLHSNG 184
+LT L+ A V+ LA +++ GLHK+L +++ I E+ A+ L+Y
Sbjct: 1230 ALTMLKGAMVSNSALAAISVHYGLHKFLVVESKNVKKAIDEYVPAVEEKQRLEYAAADEE 1289
Query: 185 L---------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETL 231
V+ PK +AD+VES +GA+++ + ++ LL+P IS +TL
Sbjct: 1290 GRLKGQYWLEVEPPKSVADVVESILGALYVSDGFKLTGAQAMYDTLLRPFYDQHISLKTL 1349
Query: 232 KTHPVTELYEV-----CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNR 286
HP L+E+ CQ ++ + E + + + +L G + A R
Sbjct: 1350 SHHPTKILFELFQSQGCQAFEITKHIDEHDGELIRCEVVVHNVILAAGVDQ-SQNFAARR 1408
Query: 287 AAKDALNNIE 296
A+ +AL+ +E
Sbjct: 1409 ASFEALDALE 1418
>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 229
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 122/239 (51%), Gaps = 32/239 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+EIL Y F++ L + A T PS E SYERLE++GDS+L ++ + F +P++
Sbjct: 11 QEILDYTFSDITLAKAALTHPSAVEGQPVSASYERLEFLGDSILGAIIACDMFEQFPDMD 70
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G+LTR++++ V+ + L++VA +LG+ PL+ + G
Sbjct: 71 EGALTRMKTSLVSGQTLSQVADELGI-------APLI----------VFGESERGTGTRG 113
Query: 188 APKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
L ++ E+ +GA+++D + + + + E + P + + P +EL E Q+
Sbjct: 114 MHSALENVYEALVGAMYLDGGYDPTAAFIRRTLAEYMVPQRAAHPIS--PKSELQEFSQR 171
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
++ +L +ES H +++ +L+GRG+ KKE + +AA+ AL+ +E+
Sbjct: 172 IYHEMPVYELEEESGPAHLPHFTTAVYVNGELVGRGSGTSKKE-SQTQAAQAALDKLEK 229
>gi|398392319|ref|XP_003849619.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
gi|339469496|gb|EGP84595.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
Length = 1537
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 16/186 (8%)
Query: 75 GYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
Y FN LL AF+ PS P + +Y+RLE++GD++L+ F+ +P P L
Sbjct: 1257 AYSFNYPRLLYSAFSHPSNPYMHAQVPNYQRLEFLGDALLDQASISYLFYKFPAADPQWL 1316
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN-------- 183
T + A V+ + L + + +G HK+LRH+ L +QI + + +++ S
Sbjct: 1317 TEHKMAMVSNKFLGALCVNIGFHKHLRHSHSSLGKQIHAYVDELVEARTSSGPDCRDYWT 1376
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
+ D PK L D++ES +GA+FID N + V + F+E +K ++ HP T
Sbjct: 1377 TVSDPPKCLPDVIESFVGAMFIDSNFNFAEVQRFFEEHVKWYFEDMSIYDTFANNHPCTH 1436
Query: 239 LYEVCQ 244
L++ Q
Sbjct: 1437 LHQRLQ 1442
>gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
Length = 1532
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 31/211 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+E LGY F LL AF PS P E +Y+RLE++GD++L+++ F +P+
Sbjct: 1242 KENLGYEFKYPALLRSAFKHPSYPRAYEDLPNYQRLEFLGDALLDMVCVDFLFKKFPDAD 1301
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--------SEAILD-- 177
P LT ++A V+ + LA + ++LGLHK++ L Q ++F +A D
Sbjct: 1302 PQWLTEHKTAMVSNQFLACLCVQLGLHKHVLSGHASLLNQTQDFVGVLECAKQDAAADGT 1361
Query: 178 ----YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-- 231
Y +H + APK L+D+VE+ IGA+F+D V F ++P + L
Sbjct: 1362 FSQCYWIH---VKQAPKFLSDVVEAYIGALFVDSGYDYGQVRGFFDAHIRPFFTDMALYD 1418
Query: 232 ---KTHPVTELYEV------CQKNKLKVKFV 253
HPVT L + CQ+ +L V V
Sbjct: 1419 SFASRHPVTNLTRILQDDLGCQEWRLMVSEV 1449
>gi|146296620|ref|YP_001180391.1| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145410196|gb|ABP67200.1| Ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 224
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 114/242 (47%), Gaps = 40/242 (16%)
Query: 69 DEEEILGYRFNNKNLLEEAFT-------DPSCPERFFSYERLEYVGDSVLNLLLTKEQFF 121
D E+ LGYRF N NLL+ A T D SC YERLE++GD+VL L+++K F
Sbjct: 3 DIEKKLGYRFKNPNLLKLALTHKSATHDDKSC------YERLEFLGDAVLELVVSKYLFE 56
Query: 122 LYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH 181
+P L G LT LR+ V +E L++VA L L +Y+ K +E
Sbjct: 57 HFPQLSEGELTNLRATIVCSETLSKVAETLNLKRYIVFGKNEKKE--------------- 101
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET---LKTHPVTE 238
G + +D++E+ G +F++ S D+ K+ LL+P I L T+
Sbjct: 102 --GFEGNKSIWSDVLEAIFGGIFLE--SGFDMAEKIVINLLEPFIKKAAEGKLFYDYKTK 157
Query: 239 LYEVCQKNK-LKVKFVDLWKESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALN 293
L E Q+ K +K+K++D F + +G+ Y K+ A AA +AL
Sbjct: 158 LQEFIQREKNVKIKYIDYENFEDNLSRFKSELYIGKNKISEGYGNSKKEAQQEAALNALK 217
Query: 294 NI 295
+
Sbjct: 218 KL 219
>gi|392568586|gb|EIW61760.1| ribonuclease III [Trametes versicolor FP-101664 SS1]
Length = 1232
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 124/273 (45%), Gaps = 52/273 (19%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+ I+G F+ LL +A T S SYERLE++GD++L+ L+ + F +P+L P
Sbjct: 928 QAIVGSVFSKPELLAQALTHGSAFGSSEGASYERLEFIGDAILDFLVARHIFQRHPHLSP 987
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI------------- 175
G LT L+ V+ LA + GLH++L L + I+ + ++
Sbjct: 988 GGLTLLKGGMVSNRALAAFCVTTGLHRHLHFASDQLADSIQRYVTSLTELREKEYEAVAR 1047
Query: 176 ---------LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDI-VWKVFKELLKPM 225
LD PL + PK L+D+VES +GA+++ C+ ++ V + F + KP
Sbjct: 1048 EQRLPGQYWLDLPL------EPPKCLSDLVESILGALYV-CDGFFEVGVGRFFDAVFKPF 1100
Query: 226 ISP----ETLKTHPVTELYEVCQKNKLK----VK--------FVDLWKESTAFHIFIEDQ 269
+ +TL T+P L E+ Q + VK V + E + + + Q
Sbjct: 1101 MDAHVRLQTLSTNPKVTLLELLQAEGCRQHAVVKLPQDRQNALVHMEGEYRSCVVHVHGQ 1160
Query: 270 LLGRGAYAPKKEIAHNR---AAKDALNNIERLL 299
++ A P IA + AA DAL N LL
Sbjct: 1161 VIA-SATDPTAAIATRKVSLAALDALGNNPELL 1192
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 38/64 (59%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
F+YERLE++GD+ L ++ + + P G+L +R + + + L A+++G+ ++
Sbjct: 732 FNYERLEFLGDAFLKVIASNFLYVTMPTAGEGTLHNVRQSIIGNKVLHECAMRVGICPFV 791
Query: 158 RHNK 161
+H +
Sbjct: 792 QHKR 795
>gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo]
Length = 1921
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE--------AILDYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + +D L
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 181 HSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
+ + PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAA 288
PV EL E+ KF + + + +++G+G + IA + AA
Sbjct: 1849 PRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1904
Query: 289 KDALNNIE 296
+ AL +++
Sbjct: 1905 RRALRSLK 1912
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>gi|449280710|gb|EMC87946.1| Endoribonuclease Dicer [Columba livia]
Length = 1922
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE--------AILDYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + +D L
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1789
Query: 181 HSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
+ + PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1849
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAA 288
PV EL E+ KF + + + +++G+G + IA + AA
Sbjct: 1850 PRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1905
Query: 289 KDALNNIE 296
+ AL +++
Sbjct: 1906 RRALRSLK 1913
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1312 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1367
>gi|393758412|ref|ZP_10347233.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393164831|gb|EJC64883.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 252
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 96/204 (47%), Gaps = 28/204 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +GY F + LLE+A T S R ERLE++GDSVLN + F + + G
Sbjct: 8 EAAIGYSFKDIGLLEQALTHRSHSAR--HNERLEFLGDSVLNFTVAALLFERFQRIDEGD 65
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +LGL YLR L E +++ +G P
Sbjct: 66 LSRLRANLVKQAALAEIATRLGLSDYLR----LGEGELK-------------SGGFRRPS 108
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNK 247
+LAD +E+ GAVF+D V +L +PM + P+TL P T L E+ Q K
Sbjct: 109 ILADALEAIFGAVFLDAG--FTQAQTVITQLYEPMLVDVDPKTLGKDPKTLLQELLQGRK 166
Query: 248 LKVKFVDLWKESTAFHIFIEDQLL 271
L + + A H DQL
Sbjct: 167 LDLPVYTVVATHGAAH----DQLF 186
>gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa]
gi|307715909|gb|ADN88174.1| dicer [Sus scrofa]
Length = 1915
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1663 ERKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1722
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1723 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1778
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1838
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1839 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1894
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1895 SAAARRALRSLK 1906
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1308 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1363
>gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus]
gi|257051054|sp|Q25BN1.3|DICER_CHICK RecName: Full=Endoribonuclease Dicer
gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus]
Length = 1921
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE--------AILDYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + +D L
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 181 HSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
+ + PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAA 288
PV EL E+ KF + + + +++G+G + IA + AA
Sbjct: 1849 PRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1904
Query: 289 KDALNNIE 296
+ AL +++
Sbjct: 1905 RRALRSLK 1912
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>gi|126290301|ref|XP_001367933.1| PREDICTED: endoribonuclease Dicer-like [Monodelphis domestica]
Length = 1923
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1671 EKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1786
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1847 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1902
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1903 SAAARRALRSLK 1914
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1313 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1368
>gi|395504573|ref|XP_003756622.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer [Sarcophilus
harrisii]
Length = 1924
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1672 EKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1731
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1732 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1787
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1788 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1847
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1848 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1903
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1904 SAAARRALRSLK 1915
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1314 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1369
>gi|344274190|ref|XP_003408901.1| PREDICTED: endoribonuclease Dicer [Loxodonta africana]
Length = 1920
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1668 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1727
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1728 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1783
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1784 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLELVWQVYYPMMRPLIEKF 1843
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1844 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1899
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1900 SAAARRALRSLK 1911
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1306 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1361
>gi|402225633|gb|EJU05694.1| hypothetical protein DACRYDRAFT_113750 [Dacryopinax sp. DJM-731 SS1]
Length = 1596
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 20/220 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
++ LGY F N LL EA T P+ P+ + SY+RLE++GD+V+++ + F +P
Sbjct: 1148 QDTLGYEFRNPLLLLEALTHPTFPDSQTPSYQRLEFLGDAVVDVFIVDYLFHKFPACTAH 1207
Query: 130 SLTRLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV-- 186
LT ++ V L VAI+ LGL+K++ + L+ +I S +L+ PL L
Sbjct: 1208 KLTWMKHLIVCNSLLGAVAIRELGLYKHMLYMARRLDLEI-TLSVRVLE-PLSYQELAEK 1265
Query: 187 ----DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK---PMISPETLKTHPVTEL 239
D PK L D++E+ +GAV +D N + + V + L K P+ P+ + HPV EL
Sbjct: 1266 WWEFDPPKALNDVLEAVLGAVLVDTNYDLQLCRPVLERLFKDILPLAHPD-VPLHPVMEL 1324
Query: 240 YE-VCQKNKLKVKF-----VDLWKESTAFHIFIEDQLLGR 273
Y +K +++F D FH+ + D + R
Sbjct: 1325 YMWAARKGCTRIRFEKSRQRDESNSKDTFHVLVHDTEISR 1364
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
++Y+RLE++GD+ L L + F YP+ G L+ L+ +V L A +LG++ Y
Sbjct: 994 YNYDRLEFLGDTFLKLATSIHIFNKYPHRHEGQLSVLKDGSVRNTYLRGKAYRLGIYHYN 1053
Query: 158 RHNKPLLEEQIRE--FSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
+K ++ + LD + + L+D VES +GA ++
Sbjct: 1054 VTDKVCGPKRWMPPVTTHTTLDGVIPYVKQTSLRRCLSDCVESLLGAGYL 1103
>gi|47210543|emb|CAF93935.1| unnamed protein product [Tetraodon nigroviridis]
Length = 479
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 227 ERKISYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 286
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 287 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDF----VQFQLEKNEMQGM 342
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 343 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 402
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ + KF + + + +++G+G + IA
Sbjct: 403 SANVPRSPVRELLEMEPET---AKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 458
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 459 SAAARRALRSLK 470
>gi|333923291|ref|YP_004496871.1| ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748852|gb|AEF93959.1| Ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 246
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 37/241 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+G+ ++N +LL +A T SC + +RLE++GD+VL LL+++ + +P+
Sbjct: 15 IGFEWSNPSLLTQALTHSSCVHESRGQGLHHNQRLEFLGDAVLELLISEYLYQRFPDRTE 74
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT++R+A+V LA+VA L L + LR + EE+ +G +
Sbjct: 75 GELTKMRAASVCEPSLAKVARGLDLGRCLRMGRG--EER---------------SGGRER 117
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQK 245
P +LAD E+ +GA+++D ++ + E L P+I+ L TEL E Q+
Sbjct: 118 PSILADAFEALLGAIYLD--HGLEAARRFVLEQLNPIITDVVAGRLDRDYKTELQERLQQ 175
Query: 246 NKLK-VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
N V +V + KE+ H + Q++G+G+ KKE A +AAKDA N ++
Sbjct: 176 NSPDPVSYV-IMKETGPDHDKVFTAGVIYRGQIIGQGSGHSKKE-AEQQAAKDAFNRLDA 233
Query: 298 L 298
L
Sbjct: 234 L 234
>gi|402832828|ref|ZP_10881457.1| ribonuclease III [Selenomonas sp. CM52]
gi|402282311|gb|EJU30869.1| ribonuclease III [Selenomonas sp. CM52]
Length = 242
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 112/239 (46%), Gaps = 33/239 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG F N LL EA T S + ERLE++GD+VL L + F +PN P
Sbjct: 23 LGIEFQNIVLLHEALTHTSYANEAKNKGVVHNERLEFLGDAVLELATSTYLFERFPNRPE 82
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT+ R++ V L+R A +L L +YL +L + S G
Sbjct: 83 GELTKARASIVREATLSRRAAELKLGEYL-----------------LLGHGEASMGGGHR 125
Query: 189 PKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
P +LAD E+ IGA+++DC ++ D V K + L + S E +K + T L EV QK+
Sbjct: 126 PSMLADAFEAVIGAIYLDCGWQTAYDYVLKQLHDELLTIDSGENMKDYKTT-LQEVVQKH 184
Query: 247 KLKVKFVDLWKEST-------AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+L E+ F + I D + G G KKE A AA++AL +++L
Sbjct: 185 VDSKIAYELLTETGPDHDKTFEFAVRINDAVYGTGKGRNKKE-AEQGAAREALRKMKKL 242
>gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata]
Length = 1921
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE--------AILDYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + +D L
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 181 HSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
+ + PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAA 288
PV EL E+ KF + + + +++G+G + IA + AA
Sbjct: 1849 PRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1904
Query: 289 KDALNNIE 296
+ AL +++
Sbjct: 1905 RRALRSLK 1912
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
Length = 1018
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 21/209 (10%)
Query: 65 ANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQF 120
NNL+ E+++GY F NK + A T S + E +LE++GD++L ++ + F
Sbjct: 811 TNNLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFF 870
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI----- 175
+P+ P L + A VN + LA + I +G+ KY+ P L I +F++ I
Sbjct: 871 NSHPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYM 930
Query: 176 LDYPLHSNGLVDA-----------PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP 224
+D ++ N +A PK ++D+VE+ IGA++ID SI V K LL+P
Sbjct: 931 IDDEMNYNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIAEVTKALMPLLQP 990
Query: 225 MISPETLKTHPVTELYEVCQKNKLKVKFV 253
IS L+ P++ + ++ +K V FV
Sbjct: 991 RISL-VLRDIPISPIRQLYEKVPEGVSFV 1018
>gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa]
gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa]
Length = 1588
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 5/180 (2%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E +LG++F K LL +AF PS F L++ + + YP + PG
Sbjct: 1184 ENLLGHQFLYKGLLLQAFVHPSHKNGGEFGVMILQFAMTLMFPPEIGVPWRCFYPKMKPG 1243
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT LRS VN A VA+ H+YL + L ++F + + P L++ P
Sbjct: 1244 HLTDLRSVLVNNRAFASVAVDRSFHEYLICDSDALSAATKKFVD-FVRTPKSERRLLEGP 1302
Query: 190 K---VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
K VL D+VES++GA+ +D ++ +WK+ L P+ S L+ +PV EL E+CQ +
Sbjct: 1303 KCPKVLGDLVESSVGAILLDTGFDLNHIWKIMLSFLDPISSFSNLQINPVRELKELCQSH 1362
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANV 139
EA T C ER S ERLE +GD+ L + + F L+ L G LTR RS V
Sbjct: 1009 EALTTEKCQERL-SLERLETLGDAFLKFAVGRHFFLLHDTLDEGELTRKRSNAV 1061
>gi|387015528|gb|AFJ49883.1| Endoribonuclease Dicer-like isoform 1 [Crotalus adamanteus]
Length = 1917
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1665 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE--------AILDYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + +D L
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1784
Query: 181 HSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
+ + PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1785 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSEMSLEMVWQVYYPMMRPLIEKFSANV 1844
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAA 288
PV EL E+ KF + + + +++G+G + IA + AA
Sbjct: 1845 PRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1900
Query: 289 KDALNNIE 296
+ AL +++
Sbjct: 1901 RRALRSLK 1908
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1309 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1364
>gi|149636857|ref|XP_001510982.1| PREDICTED: endoribonuclease Dicer-like [Ornithorhynchus anatinus]
Length = 1921
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1669 ERKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1784
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ + KF + + + +++G+G + IA
Sbjct: 1845 SANVPRSPVRELLEMEPET---AKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1900
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1901 SAAARRALRSLK 1912
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei]
gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei]
Length = 1941
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 116/260 (44%), Gaps = 31/260 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GYRF + L +AFT S + Y+RLE++GD+VL+ ++T+ F P
Sbjct: 1678 EERIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDVRQYSP 1737
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN----- 183
G LT LRSA VN A +A+K K+ P L I +F + D +N
Sbjct: 1738 GVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCADRNFDTNFNAEM 1797
Query: 184 --------------GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE 229
V+ PK L D+ ES GA+++D ++D W+V +++ I
Sbjct: 1798 YMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRSTID-S 1856
Query: 230 TLKTHPVTELYEVCQKNKLKVKFVDLWK--ESTAFHIFIE----DQLLGRGAYAPKKEIA 283
P + + E+ + K +F + + ES + ++ + G G IA
Sbjct: 1857 CCANPPRSPIRELMELEASKARFSKMERILESGKVRVTVDVGNNMRFTGMGR---NYRIA 1913
Query: 284 HNRAAKDALNNIERLLNEKR 303
AAK AL + ++ ++R
Sbjct: 1914 KATAAKRALKYLHQMEEQRR 1933
>gi|109478606|ref|XP_001068155.1| PREDICTED: endoribonuclease Dicer [Rattus norvegicus]
gi|109479876|ref|XP_001069041.1| PREDICTED: endoribonuclease Dicer [Rattus norvegicus]
gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus]
Length = 1918
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1666 EKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1725
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1726 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1781
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1841
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1842 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1897
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1898 SAAARRALRSLK 1909
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKQGL 1365
>gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
Length = 222
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 27/227 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+ LGY+F +KNLL A T S + YERLE++GD+ L L ++K F +P L G
Sbjct: 5 EKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSEG 64
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT +R+A V ++ L+++A KL L ++ K E++ +F H N
Sbjct: 65 ELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGK---REKMEKF---------HEN-----K 107
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET---LKTHPVTELYEVCQK- 245
+LAD+VE+ GA+FI+ S + + K+ LLKP I L T+L E QK
Sbjct: 108 SILADVVEAIFGAIFIE--SGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKE 165
Query: 246 NKLKVKFVD---LWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ K+ + D + K+ +FIE + + G KKE + A K
Sbjct: 166 GQKKIVYKDYEIIEKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYK 212
>gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 98/222 (44%), Gaps = 43/222 (19%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 19 EKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPRQHSP 78
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--------DYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + L D L
Sbjct: 79 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGXDSEL 138
Query: 181 HSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI------- 226
+ + PK DI ES GA++ D S+++VW+V+ +P+I
Sbjct: 139 RRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQVYYPXXQPLIEKFSANV 198
Query: 227 -----------SPETLKTHPVTELY--------EVCQKNKLK 249
PET K P Y EV K K K
Sbjct: 199 PRSPVRELLEXEPETAKFSPAERTYDGKVRVTVEVVGKGKFK 240
>gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti]
gi|108877338|gb|EAT41563.1| AAEL006794-PA [Aedes aegypti]
Length = 1658
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 94/201 (46%), Gaps = 41/201 (20%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ILGY+F ++ L +A T S P SY++LE++GD+VL+ L++ F P + P
Sbjct: 1405 ESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSP 1464
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYL------------------RHNKP-------- 162
G LT LRSA VN LA + ++ GLH Y+ NK
Sbjct: 1465 GQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQNKHEITDQVNL 1524
Query: 163 LLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
L+EE R+ +E VD PK L D+ ES + AVF+D + W+V ++
Sbjct: 1525 LVEESDRKMAE-----------FVDVPKALGDVFESLVAAVFLDSGNDFAATWQVIYGMM 1573
Query: 223 KPMISPETLKT--HPVTELYE 241
I T T V +LYE
Sbjct: 1574 GNEILTFTENTPIQIVRQLYE 1594
>gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16]
gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16]
Length = 226
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 25/209 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
EE LGY+F N+ LLE A T SC + S ERLE++GDS+L +++ + +P+L
Sbjct: 5 EEKLGYQFQNRELLENALTHSSCANESRGKLQSNERLEFLGDSILGMVVADHLYRGHPDL 64
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P G LTR+R+A V E L VA L L YL +L + G
Sbjct: 65 PEGELTRVRAALVCEESLVEVAQALDLGSYL-----------------LLGKGEEAGGGR 107
Query: 187 DAPKVLADIVESTIGAVFIDC--NSSIDIVWK-VFKELLKPMISPETLKTHPVTELYEVC 243
P + AD VE+ + AV++D S+ I+ K + ++ + SP KT + EL +
Sbjct: 108 TRPSIQADAVEAVLAAVYLDGGIGSARKIIQKYILCREIEGITSPRDYKT-ALQELVQRE 166
Query: 244 QKNKLKVKFVDLWKESTAFHIFIEDQLLG 272
LK + V A F++ L G
Sbjct: 167 SGQVLKYRLVGSQGPDHAKRFFVDVDLNG 195
>gi|295696065|ref|YP_003589303.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
gi|295411667|gb|ADG06159.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
Length = 231
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 114/252 (45%), Gaps = 42/252 (16%)
Query: 65 ANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS----YERLEYVGDSVLNLLLTKEQ 119
A DE E LG F N +LL +AFT S ERLE++GD+VL LL+++
Sbjct: 2 ATKWDELEARLGITFRNASLLRQAFTHSSYRNEHRGDVEDNERLEFLGDAVLELLVSEFL 61
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F YP P G LTR+R+A V L R A LGL +Y+R + EE
Sbjct: 62 FRAYPRFPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGRG--EEM------------ 107
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PV-- 236
+G P +LAD+ E+ IGA+F+D + +E L+ M+ P + P+
Sbjct: 108 ---SGGRRRPSLLADVYEALIGAIFLDQG------LEAAREFLQRMMFPALQREQAPILD 158
Query: 237 ---TELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNR 286
T L E QK L + E H ++I Q G G+ KKE A
Sbjct: 159 DYKTMLQEHVQKVGLGPLTYRITDERGPAHHREFVAQVWIGGQAYGEGSGRSKKE-AEQH 217
Query: 287 AAKDALNNIERL 298
AA++AL + L
Sbjct: 218 AAREALMKLTAL 229
>gi|432936630|ref|XP_004082201.1| PREDICTED: endoribonuclease Dicer-like [Oryzias latipes]
Length = 1890
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1638 EKKINYSFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1697
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1698 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDF----VQFQLEKNEMQGM 1753
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1754 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1813
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1814 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1869
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1870 SAAARRALRSLK 1881
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1281 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1336
>gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti]
Length = 1658
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 25/193 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ILGY+F ++ L +A T S P SY++LE++GD+VL+ L++ F P + P
Sbjct: 1405 EGILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSP 1464
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN LA + ++ GLH Y+ + + +F +L H + +
Sbjct: 1465 GQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKF---VLFQEQHKHEITDQ 1521
Query: 186 ---------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
VD PK L D+ ES + AVF+D + W+V ++ I T
Sbjct: 1522 VNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATWQVIYGMMGNEILTFT 1581
Query: 231 LKT--HPVTELYE 241
T V +LYE
Sbjct: 1582 ENTPIQIVRQLYE 1594
>gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis
carolinensis]
Length = 1918
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 119/248 (47%), Gaps = 26/248 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1666 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1725
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE--------AILDYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + +D L
Sbjct: 1726 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1785
Query: 181 HSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
+ + PK + DI ES GA+++D S+++VW V+ +++P+I +
Sbjct: 1786 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKFSANV 1845
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAA 288
PV EL E+ KF + + + +++G+G + IA + AA
Sbjct: 1846 PRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1901
Query: 289 KDALNNIE 296
+ AL +++
Sbjct: 1902 RRALRSLK 1909
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1308 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1363
>gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis
carolinensis]
Length = 1915
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 119/248 (47%), Gaps = 26/248 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1663 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1722
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE--------AILDYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + +D L
Sbjct: 1723 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1782
Query: 181 HSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
+ + PK + DI ES GA+++D S+++VW V+ +++P+I +
Sbjct: 1783 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKFSANV 1842
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAA 288
PV EL E+ KF + + + +++G+G + IA + AA
Sbjct: 1843 PRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1898
Query: 289 KDALNNIE 296
+ AL +++
Sbjct: 1899 RRALRSLK 1906
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1305 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1360
>gi|449295521|gb|EMC91542.1| hypothetical protein BAUCODRAFT_570103 [Baudoinia compniacensis UAMH
10762]
Length = 1569
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
Y F LL AF PS P E+ +Y+RLE++GD++L++ F YP+ P LT
Sbjct: 1264 YHFKYPRLLRSAFIHPSQPVMYEKVPNYQRLEFLGDALLDMASIAYLFHRYPDRDPQWLT 1323
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL-------DYPLHSNGL 185
+ A V+ + L V + +G H +LRH+ +L+ QI +++ +L D + +
Sbjct: 1324 EHKMAMVSNKFLGAVCVNVGFHLHLRHSSAILQHQIADYAIELLETKRVAGDAKDYWTTV 1383
Query: 186 VDAPKVLADIVESTIGAVFIDCN 208
D PK L DIVE+ +GA FID N
Sbjct: 1384 SDPPKCLPDIVEAYVGAAFIDSN 1406
>gi|449682783|ref|XP_002165718.2| PREDICTED: endoribonuclease Dicer-like [Hydra magnipapillata]
Length = 1001
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 19/191 (9%)
Query: 77 RFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
+F NK+ L +AFT S + Y++ E++GD++L+ L+T NL PG LT
Sbjct: 768 KFLNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQNLSPGQLTYF 827
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD---------------YP 179
RSA VN +AIK +KY+ + L F E + D P
Sbjct: 828 RSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDDHGLKDEYFESPFVICP 887
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVT 237
S APKVL D+ ES GA+F+D + VWK++ LLKP+I +K HP
Sbjct: 888 TGSEEGYQAPKVLGDLFESVAGAIFLDSGLDLVTVWKIYYPLLKPVIDKYMIKLPRHPAV 947
Query: 238 ELYEVCQKNKL 248
+ +E K K+
Sbjct: 948 DFFEKYPKAKI 958
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 44 LQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERF------ 97
L+D+ + ++SE++ ++ LD E +L KN + E PS + F
Sbjct: 668 LKDMIAEKIKINKSENQGRYQSSVLDLENLLQL----KNYVTENVKSPSVLKIFEALTTR 723
Query: 98 -----FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
F ERLE +GDS L ++ FF P+ G LT R +N L + L
Sbjct: 724 QASMPFDLERLEVLGDSFLKQAVSIFVFFQNPSFHEGKLTIRRKKFLNKSHLIQAFTHLS 783
Query: 153 LHKYLRHNKPLLEEQIREFSEAILDY 178
YL ++ +Q +AILD+
Sbjct: 784 ---YLSNSVTGCYQQYEFLGDAILDF 806
>gi|227510452|ref|ZP_03940501.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190104|gb|EEI70171.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 236
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 34/233 (14%)
Query: 79 NNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
++++LL+EAFT S + YERLE++GD+VL L++++ F YP LP G LTR
Sbjct: 18 DDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQGRLTR 77
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+A VN + + A + +KY+R K EE+ G D +L
Sbjct: 78 LRAAMVNEQSFSTFARECHFNKYIRLGKG--EEKA---------------GARDRDSLLC 120
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQKN---KL 248
DI ES +GA+++D + +V ++++ P + TEL E+ Q + +
Sbjct: 121 DIFESFVGALYLDQGKT--VVEGFVQQVIFPKLDEGMFAKFFDHKTELQELAQADGPVDI 178
Query: 249 KVKFVDLWKEST----AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ VD + ++ I+D+LLG G KK+ A RAA++AL + +
Sbjct: 179 DYELVDEYGPDNDRLFKVNVAIDDKLLGVGIGHSKKD-AEQRAAQEALKHFSK 230
>gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio]
gi|229485378|sp|Q6TV19.2|DICER_DANRE RecName: Full=Endoribonuclease Dicer
Length = 1865
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 34/255 (13%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPN 125
L+ E + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK +
Sbjct: 1610 LNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQ 1669
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
PG LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1670 HSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEM 1725
Query: 186 -------------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1726 QGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 1785
Query: 227 S--PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKE 281
+ PV EL E+ KF + + + +++G+G +
Sbjct: 1786 EKFSANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYR 1841
Query: 282 IAHNRAAKDALNNIE 296
IA + AA+ AL +++
Sbjct: 1842 IAKSAAARRALRSLK 1856
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1292 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1347
>gi|440632076|gb|ELR01995.1| hypothetical protein GMDG_05164 [Geomyces destructans 20631-21]
Length = 1634
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 94/201 (46%), Gaps = 33/201 (16%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
Y F+ LL AFT PS P ER +Y+RLE++GDS+L++ F +P P LT
Sbjct: 1311 YHFHYPRLLRSAFTHPSYPFAYERVPNYQRLEFLGDSLLDMACVNFLFHRFPTKDPQWLT 1370
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--------------------- 171
+ A V+ + L V + LG H L P+++ I E+
Sbjct: 1371 EHKMAMVSNQFLGAVCVALGFHTQLLQFNPIIQGSITEYVCEITEAREQAEQDAIRHGKL 1430
Query: 172 -SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
SE DY LH+ PK L DI+E+ IGA+F+D + + V + F +K T
Sbjct: 1431 ASECARDYWLHTKL---PPKCLPDIIEAYIGAIFVDSSFNYGEVERFFDLHMKWYFEDIT 1487
Query: 231 L-----KTHPVTELYEVCQKN 246
L HPVT L++ Q+N
Sbjct: 1488 LYDTFANKHPVTFLHKFLQQN 1508
>gi|358332039|dbj|GAA50765.1| endoribonuclease Dicer homolog 4 [Clonorchis sinensis]
Length = 1042
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 13/168 (7%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER--FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+ ILGY+F + +LL A T S P+ F SY+RLE++GD+VL ++T + + P
Sbjct: 797 QNILGYQFKDISLLIRALTHQSSPQTSLFGSYQRLEFLGDAVLGYVITIYLYEKHVEFDP 856
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD- 187
G LT RS V+ LA ++ LH Y+ HN+P + + F + ILD + ++
Sbjct: 857 GQLTESRSNIVSNNSLACAIVEHQLHPYIIHNQPAFDTAV-TFIQFILDTTTSVSDQLEL 915
Query: 188 ---------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
K+LAD+ E+ +GA+F+D S+ V ++ LL P I
Sbjct: 916 LNQEVLKGLRVKILADVFEAIVGAIFVDTKGSLSTVSQLIHRLLDPRI 963
>gi|410928196|ref|XP_003977487.1| PREDICTED: endoribonuclease Dicer-like [Takifugu rubripes]
Length = 1883
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1631 ERKINYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1690
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1691 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDF----VQFQLEKNEMQGM 1746
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+++ +++P+I
Sbjct: 1747 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQIYYPMMRPLIEKF 1806
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1807 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1862
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1863 SAAARRALRSLK 1874
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1276 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1331
>gi|355576174|ref|ZP_09045547.1| ribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354817390|gb|EHF01900.1| ribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 238
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 113/240 (47%), Gaps = 32/240 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EEI+G+ F ++NL A T PS E SYERLE++GDS+L ++ + F +P +
Sbjct: 11 EEIVGHHFADQNLATSAITHPSAVENKPVSASYERLEFLGDSILGAIVATDLFERFPRMD 70
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTRL+ + V+ + L+ VA +LG+ + + E LHS
Sbjct: 71 EGELTRLKISLVSGKMLSAVADELGIGEVIVFG---------ESERGTGARGLHS----- 116
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQK 245
L ++ ES +GA+++D D + L P +SPE + P + L EV Q+
Sbjct: 117 ---ALENVYESIVGALYLDAG--YDATHEFVSRTLAPHMSPELAERPLSPKSRLQEVTQR 171
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+ L E H + ++ +GRG + KKE + + AA DAL + +L
Sbjct: 172 DLRCAPEYKLAGERGPAHSPTFTSVVLVDGVRMGRGEGSSKKE-SESAAALDALQRMGQL 230
>gi|391348710|ref|XP_003748587.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
Length = 1732
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 14/188 (7%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + + F +K L+ +A T SC + + Y RL ++G++V + LLT + L NL P
Sbjct: 1444 EKQIDFTFKSKGLVLQAITHHSCRDHLLTEDYNRLAFIGEAVADYLLTLYIYGLSSNLDP 1503
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV-- 186
G L+ LRSA +N + A ++ LH L + L IR++ E I D L N ++
Sbjct: 1504 GQLSDLRSALINNQVTAYAVVRAELHTVLLYTNSKLFSAIRKYLENIDDIGLRLNTVLGD 1563
Query: 187 ---------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVT 237
+ P+ LA I++S +GAVFID S + VW++ ++ I+ + + P+
Sbjct: 1564 WETDDAEEAEVPRPLARILQSILGAVFIDSGKSFESVWRILVRIMGHEIALFS-RNVPIP 1622
Query: 238 ELYEVCQK 245
E+C+K
Sbjct: 1623 PTTELCKK 1630
>gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis]
Length = 412
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY F+NK L +A T S + + Y+RLE++GD++L+ L+T+ + NL P
Sbjct: 243 ENRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLDP 302
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LR A VN A +A+K G +K L P +I F + + + + G+
Sbjct: 303 GELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKER--EARGIQIS 360
Query: 186 --------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK 223
++APKVL DI ES GA+F+D + + W+V+ +LK
Sbjct: 361 KDPFLTLSNDDEEGIEAPKVLGDIFESVAGAIFLDSGMDLVLTWRVYYRMLK 412
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 80 NKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANV 139
+ LL +A T S + F ERLE +GD+ L ++ + Y + G LT+ +++ +
Sbjct: 16 DSELLLQALTTKSAGDAF-DLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQL 74
Query: 140 NTEKLARVAIKLGLHKYLRHNK 161
+ L RVA +LGL +YL++ +
Sbjct: 75 SNRALYRVACRLGLPEYLQNTQ 96
>gi|348544424|ref|XP_003459681.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
[Oreochromis niloticus]
Length = 1917
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1665 EKKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDF----VQFQLEKNEMQGM 1780
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKF 1840
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1841 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1896
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1897 SAAARRALRSLK 1908
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1304 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1359
>gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R]
gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R]
Length = 1725
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 16/241 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+E LGYRF + LL EA T PS SY+RLE++GD+V++L + + + +P G
Sbjct: 1120 QESLGYRFRSGRLLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYLYNKFPQATSG 1179
Query: 130 SLTRLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNG 184
L+ RS V LA VA+K LGLHK L N L I + + + +H+
Sbjct: 1180 QLSWARSRAVCAPSLASVAVKRLGLHKLLLVNNVELSIAINNYVPILEELSNEELIHNAW 1239
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELY- 240
D PK ++D++ES +GAV +D + + +I V + ++ + +SP L P++EL
Sbjct: 1240 KQDPPKAISDVMESVLGAVLVDSDYNWEIACSVSEMVMGDLLVVLSP-NLPRDPISELMI 1298
Query: 241 ----EVCQKNKLKVKFVDL-WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
C K K + K++ + + + D+ + +AP +A A++ A + +
Sbjct: 1299 WVSRSGCSKASFKKSHSNAEAKKNDSISVIVHDKTVVGPLFAPNLSLAKGLASERARSIL 1358
Query: 296 E 296
E
Sbjct: 1359 E 1359
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
+LL +A T PS F+ +RLE +GDSVL L F +P G L LR +V+
Sbjct: 949 DLLIQALTIPSA-NAGFNNQRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVSN 1007
Query: 142 EKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS------NGLVDAPKVLADI 195
L A ++GL +YL + ++ ++ A D P S V + L D
Sbjct: 1008 RTLLARAKEVGLEEYLSCESQSM--RVWRYTLAAEDDPSWSVEPRRRAHRVFPRRSLQDC 1065
Query: 196 VESTIGAVF 204
+E+T+GA F
Sbjct: 1066 MEATLGAAF 1074
>gi|167755900|ref|ZP_02428027.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402]
gi|237734864|ref|ZP_04565345.1| ribonuclease III [Mollicutes bacterium D7]
gi|374625205|ref|ZP_09697622.1| ribonuclease III [Coprobacillus sp. 8_2_54BFAA]
gi|167704839|gb|EDS19418.1| ribonuclease III [Clostridium ramosum DSM 1402]
gi|229382192|gb|EEO32283.1| ribonuclease III [Coprobacillus sp. D7]
gi|373916488|gb|EHQ48236.1| ribonuclease III [Coprobacillus sp. 8_2_54BFAA]
Length = 226
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 78 FNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+ N + +EAFT PS + YERLE++GD+VL +++ F LYP LP G LT+
Sbjct: 14 YQNIEIFKEAFTHPSYANENKMKNHDYERLEFLGDAVLQYHVSRHIFDLYPELPEGRLTK 73
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V E LAR A +L L PL+ E +NG D VLA
Sbjct: 74 LRAKLVREESLARFARELDL-------GPLIYLGAGEL----------NNGGRDRDSVLA 116
Query: 194 DIVESTIGAVFIDCNSS-----IDI-VWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
DI E+ +GA+ DC +DI ++K +++ I T T+L E+ Q ++
Sbjct: 117 DIFEAFMGAICHDCGPEYVEKMLDITIYKHVEDVNYDEI------TDFKTKLQELIQADQ 170
Query: 248 LKVKFVDLWKESTA-------FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
K DL S + +++ +LG G + KK A +AAKDALN + R
Sbjct: 171 RKTVTYDLISSSGPSNNPVFEMAVKMDEMVLGVGVGSSKKR-AEQQAAKDALNKLAR 226
>gi|365831591|ref|ZP_09373143.1| ribonuclease III [Coprobacillus sp. 3_3_56FAA]
gi|365262068|gb|EHM91969.1| ribonuclease III [Coprobacillus sp. 3_3_56FAA]
Length = 226
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 41/237 (17%)
Query: 78 FNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+ N + +EAFT PS + YERLE++GD+VL +++ F LYP LP G LT+
Sbjct: 14 YQNIEIFKEAFTHPSYANENKMKNHDYERLEFLGDAVLQYHVSRHIFDLYPELPEGRLTK 73
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V E LAR A +L L PL+ E +NG D VLA
Sbjct: 74 LRAKLVREESLARFARELDL-------GPLIYLGAGEL----------NNGGRDRDSVLA 116
Query: 194 DIVESTIGAVFIDCNSS-----IDI-VWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
DI E+ +GA+ DC +DI ++K +++ I T T+L E+ Q ++
Sbjct: 117 DIFEAFMGAICHDCGPEYVEKMLDITIYKHVEDVNYDEI------TDFKTKLQELIQADQ 170
Query: 248 LKVKFVDLWKESTA-------FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
K DL S + +++ +LG G + KK A +AAKDALN + R
Sbjct: 171 RKTVTYDLISSSGPSNNPIFEMAVKMDEMVLGVGVGSSKKR-AEQQAAKDALNKLAR 226
>gi|440655799|gb|AGC22548.1| dicer [Ctenopharyngodon idella]
Length = 1881
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1629 EKKINYMFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1688
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1689 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1744
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1745 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1804
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1805 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1860
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1861 SAAARRALRSLK 1872
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>gi|403418950|emb|CCM05650.1| predicted protein [Fibroporia radiculosa]
Length = 1373
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 23/204 (11%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKE 118
LP A E I+G F LL +A T S +R +Y+RLE+VGD+VL+ L+ +
Sbjct: 1069 LPTATVRAVETIVGNVFARPQLLAQALTHTSIGAHDDR--TYDRLEFVGDAVLDFLVVQF 1126
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEE----------QI 168
+ P L P LT L+SA V+ LA + GLH +LRH P + ++
Sbjct: 1127 IYDRNPGLSPNGLTLLKSAMVSNHALAAFCVHSGLHIHLRHAAPEVGTAVQVYVRKLGEV 1186
Query: 169 RE----FSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP 224
RE +++ P +D PK L+D+VES IGA++I + V F +KP
Sbjct: 1187 REKEYRLAQSERRLPGQYWLALDPPKTLSDVVESVIGALYISDDFQETSVRAFFDGTIKP 1246
Query: 225 M----ISPETLKTHPVTELYEVCQ 244
I ++L HP T L+E+ Q
Sbjct: 1247 FYEYHIRLQSLCPHPTTTLFELLQ 1270
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 54/210 (25%)
Query: 74 LGYRFNNKNLLEE----AFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
L F +LEE A T PS F YERLE GD+ L + + F P++ G
Sbjct: 860 LNAHFFQHTILEEHLIAALTPPSA-SVAFDYERLELFGDAFLKYVASIYCFVTTPHVREG 918
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS------EAILDY-PLHS 182
+L R ++ + L A ++GL Y++ +KP + + + + I D +H
Sbjct: 919 ALHMARQKIISNKALLTGANRIGLPPYIQ-SKPFVAKTWTPITSPHSSRDPINDQKAVHY 977
Query: 183 NGLVD---------------------------APKVLADIVESTIGAVFIDCNSSIDI-- 213
N V K +AD+VE+ IGA ++ I +
Sbjct: 978 NDAVAGDTSAIQTTSKRSKKQKQQDEQNIQWLGDKTVADVVEAIIGAAYLSGGQRIALQT 1037
Query: 214 ------------VWKVFKELLKPMISPETL 231
W F L SP T+
Sbjct: 1038 MKVLSVNIPGVEQWSDFSRLFTSQTSPSTV 1067
>gi|58698421|ref|ZP_00373332.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
gi|58535076|gb|EAL59164.1| ribonuclease III, partial [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 232
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 37/241 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+I+ Y+F N +LEEA T PS +R SYERLE++GDSVLN++++ F L+P
Sbjct: 10 KIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFPEE 69
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L + ++ V +A VA ++ L ++ I++ NG
Sbjct: 70 KEGALAKRKTDLVCGNTIANVAKEIKLGSFI-----------------IMNNSERCNGGR 112
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID + + + +++L K M+ P P T L E Q
Sbjct: 113 CNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDP---PQDPKTSLQEWTQ 169
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIEDQLLGR-GAYAPKKEIAHNRAAKDALNNIE 296
KNKL + +L K++ H + IED G+ A A K+IA +AA+ L IE
Sbjct: 170 KNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKAAELMLEKIE 227
Query: 297 R 297
+
Sbjct: 228 K 228
>gi|227513461|ref|ZP_03943510.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227524604|ref|ZP_03954653.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227083334|gb|EEI18646.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227088279|gb|EEI23591.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 236
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 34/233 (14%)
Query: 79 NNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
++++LL+EAFT S + YERLE++GD+VL L++++ F YP LP G LTR
Sbjct: 18 DDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQGRLTR 77
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+A VN + + A + +KY+R K EE+ G D +L
Sbjct: 78 LRAAMVNEQSFSTFARECHFNKYIRLGKG--EEKA---------------GARDRDSLLC 120
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQKN---KL 248
DI ES +GA+++D +V ++++ P + TEL E+ Q + +
Sbjct: 121 DIFESFVGALYLDQGKK--VVEGFVQQVIFPKLDEGMFAKFFDHKTELQELAQADGPVDI 178
Query: 249 KVKFVDLWKEST----AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ VD + ++ I+D+LLG G KK+ A RAA++AL + +
Sbjct: 179 DYELVDEYGPDNDRLFKVNVAIDDKLLGVGIGHSKKD-AEQRAAQEALKHFSK 230
>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
Length = 234
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 116/242 (47%), Gaps = 36/242 (14%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSC---PERFFSYERLEYVGDSVLNLLLTKEQFFL 122
NLD ++++GY F N++LLE A T SC P SYERLE++GD++L +L++ F
Sbjct: 5 NLDPLQDLIGYHFKNESLLETALTHRSCLNQPGVSESYERLEFLGDAILEMLISIYLFEK 64
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
YP+ G LT RSA V TE L+ V++ + Y+R +K E++
Sbjct: 65 YPDKMEGYLTAARSATVRTESLSEVSVHNRFNDYIRMSKG---EEV-------------- 107
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP----MISPETLKTHPVTE 238
G +L D++ES IGA++ID +D F+ + P +I+ LK P +
Sbjct: 108 TGGRQNLSILEDVIESLIGALYID--GGLDAAKNFFESFILPNAQGIIALNRLK-DPKSL 164
Query: 239 LYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
L E Q ES H + IE + L G K+E A +AA+ A
Sbjct: 165 LQEKVQSAGQSSPIYQTIGESGLDHNKTFEVAVSIEGKQLASGTGKNKQE-AEQKAAQKA 223
Query: 292 LN 293
L+
Sbjct: 224 LD 225
>gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
Length = 222
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 27/227 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+ LGY+F +KNLL A T S + YERLE++GD+ L L+++K F +P L G
Sbjct: 5 EKALGYKFMDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPELSEG 64
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT +R+A V ++ L+++A KL L ++ K E++ +F H N
Sbjct: 65 ELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGK---REKMEKF---------HEN-----K 107
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET---LKTHPVTELYEVCQ-K 245
+L D+VE+ GA+FI+ S + + K+ LLKP I L T+L E Q K
Sbjct: 108 SILTDVVEAIFGAIFIE--SGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKK 165
Query: 246 NKLKVKFVD---LWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ K+ + D + K+ +FIE + + G KKE + A K
Sbjct: 166 GQKKIVYKDYEIIEKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYK 212
>gi|367045744|ref|XP_003653252.1| hypothetical protein THITE_2048914 [Thielavia terrestris NRRL 8126]
gi|347000514|gb|AEO66916.1| hypothetical protein THITE_2048914 [Thielavia terrestris NRRL 8126]
Length = 1591
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+GY F + LL AF P+ P ER SY+RLE++GD++L++ + F +P P
Sbjct: 1282 MGYAFKHPRLLRSAFQHPTYPSMYERLPSYQRLEFLGDALLDMASVEFLFHRFPGADPQW 1341
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--------SEAILDYPLHS 182
LT + A V+ + L +A++LG H+ L + P L+ +I E+ A D H
Sbjct: 1342 LTEHKMAMVSNQFLGCLAVELGFHRALTYCSPALQREIGEYVAEMEEALQSAREDAARHG 1401
Query: 183 --------NGLVDA---PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
+ VD PK L D VE+ +GAVF+D V F ++P L
Sbjct: 1402 RREDEYSRDYWVDCSRPPKCLPDTVEAYVGAVFVDSEYDFGRVRDFFARHVRPFFEDMRL 1461
Query: 232 -----KTHPVTELYEVCQK 245
HPVT L V Q+
Sbjct: 1462 YDTFANKHPVTFLAGVMQQ 1480
>gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex]
Length = 1607
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 88/175 (50%), Gaps = 27/175 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ L Y F NK LL EA T S P R + Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1352 EKRLRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPCQYTP 1411
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRH------------------NKPLLEEQ--- 167
LT LRSA VN E A +A++ H YL+H N LL
Sbjct: 1412 AILTDLRSAMVNNETFAVMAVQNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMHNYFV 1471
Query: 168 IREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
+ E SE L SN +D PKVL DI ES GA+F+D S+D VWK + L
Sbjct: 1472 LEETSEP--HQSLASN--IDVPKVLGDIFESVAGAIFVDSGMSLDAVWKSYLPFL 1522
>gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio]
Length = 1243
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 34/255 (13%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPN 125
L+ E + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK +
Sbjct: 988 LNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQ 1047
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
PG LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1048 HSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEM 1103
Query: 186 -------------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1104 QGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 1163
Query: 227 S--PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKE 281
+ PV EL E+ KF + + + +++G+G +
Sbjct: 1164 EKFSANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYR 1219
Query: 282 IAHNRAAKDALNNIE 296
IA + AA+ AL +++
Sbjct: 1220 IAKSAAARRALRSLK 1234
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 670 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 725
>gi|407474084|ref|YP_006788484.1| ribonuclease III [Clostridium acidurici 9a]
gi|407050592|gb|AFS78637.1| ribonuclease III [Clostridium acidurici 9a]
Length = 241
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 32/235 (13%)
Query: 76 YRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
Y+F++ +LL A T S ++ ERLE++GDS+L L++++ F YPN P G
Sbjct: 21 YKFSDIHLLNWALTHSSYANEHKKQKIVYNERLEFLGDSILGLVVSEYIFIKYPNYPEGD 80
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LT+LR+ V L+ +A ++ L KYL +L + G +
Sbjct: 81 LTKLRATVVCEPSLSYIARQIDLGKYL-----------------LLGKGEEATGGRERVS 123
Query: 191 VLADIVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN-K 247
+LAD E+ IGA+++D S+ V K +++ ++ L T L E+ QK K
Sbjct: 124 ILADAFEALIGAIYLDGKIESAKTFVLKYLTPVIENAVNGVELFIDHKTHLQELLQKKIK 183
Query: 248 LKVKFVDLWKES----TAFH--IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
K+++ + +E FH + ++D++LG+G KKE A AA+ A+N +E
Sbjct: 184 CKIEYRVVLEEGPDHNKIFHTEVLVKDEVLGKGIGKSKKE-AEQDAARSAINRME 237
>gi|392895692|ref|NP_498761.2| Protein DCR-1 [Caenorhabditis elegans]
gi|408360292|sp|P34529.3|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1
gi|379657006|emb|CCD71200.2| Protein DCR-1 [Caenorhabditis elegans]
Length = 1910
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 31/260 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GYRF + L +AFT S + Y+RLE++GD+VL+ ++T+ F P
Sbjct: 1647 EEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYSP 1706
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----SEAILDYPLHSNG 184
G LT LRSA VN A +A+K K+ P L I +F SE D ++
Sbjct: 1707 GVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAEM 1766
Query: 185 L---------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE 229
++ PK + DI ES GA+++D ++D W+V +++ I
Sbjct: 1767 YMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIE-L 1825
Query: 230 TLKTHPVTELYEVCQKNKLKVKFVDLWK--ESTAFHIFIE----DQLLGRGAYAPKKEIA 283
P + + E+ + + KV+F + + ES + +E + G G IA
Sbjct: 1826 CCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNNMRFTGMGR---NYRIA 1882
Query: 284 HNRAAKDALNNIERLLNEKR 303
AAK AL + ++ ++R
Sbjct: 1883 KATAAKRALKYLHQIEQQRR 1902
>gi|334340306|ref|YP_004545286.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
gi|334091660|gb|AEG60000.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
Length = 249
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 35/237 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+R++N LL +A T SC + +RLE++GD+VL LL+++ + ++P+
Sbjct: 15 LGFRWHNPALLTQALTHSSCVHESRGHGLCHNQRLEFLGDAVLELLISEHLYQMFPDRTE 74
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT+ R+A+V LA+VA L L + LR + EE+ +G +
Sbjct: 75 GELTKKRAASVCEPSLAKVARGLDLGRCLRMGRG--EER---------------SGGRER 117
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQK 245
P +LAD E+ +GA+++D +++ K L+P+I L TEL E Q+
Sbjct: 118 PSILADAFEALLGAIYLD--QGLEVTRKFVLACLQPVIEDVVAGRLDRDYKTELQETLQQ 175
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ + E+ H + Q++GRG KKE A +AAKDA ++
Sbjct: 176 TSPEPLSYVIMNETGPDHNKTFTAGVIYRGQVIGRGNGHSKKE-AEQQAAKDAFAHL 231
>gi|429137921|gb|AFZ74931.1| dicer 2 [Aphis glycines]
Length = 1628
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 18/177 (10%)
Query: 55 DESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNL 113
D S S+ LP L E +GY F +K+LL +A T P+ + Y+RLE++GD++L+
Sbjct: 1361 DLSFSKVLPGYELL--ERRIGYSFKHKHLLAQALTHPTYQFGYTECYQRLEFLGDAILDF 1418
Query: 114 LLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE 173
L+T PG +T +RS+ VN A ++ ++GLH+++ + E I F E
Sbjct: 1419 LITTYIIQHCYQKTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYE 1478
Query: 174 A---------------ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVW 215
I + ++ VD PKVL D+ ES I A+++DC ++ VW
Sbjct: 1479 HQQKNNHKIGQEILYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCGRDLNFVW 1535
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%)
Query: 91 PSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIK 150
P F+YER+E GDS L ++ F +P+ G LT L+ V L V
Sbjct: 1141 PPFANDMFNYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKIVGNRNLFYVGRN 1200
Query: 151 LGLHKYLRHN 160
L L YL N
Sbjct: 1201 LNLGSYLTVN 1210
>gi|408399323|gb|EKJ78431.1| hypothetical protein FPSE_01388 [Fusarium pseudograminearum CS3096]
Length = 1860
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 111/218 (50%), Gaps = 38/218 (17%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP--- 127
++ GYRFN+ LL+ F PS P E Y+RLE++GD++L++++ FLY
Sbjct: 1566 KVTGYRFNSSALLQSVFKHPSWPYEAVPDYQRLEFLGDALLDMVVVD---FLYKRFKLAD 1622
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF---------------- 171
P LT + A V+ + L + ++L LHK+L L QI E+
Sbjct: 1623 PQWLTEHKMAMVSNQFLGCLCVQLNLHKHLLFTTSSLTGQISEYVAELELAKEDAHKVAK 1682
Query: 172 ---SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---- 224
+ +D+ LH++ PKVLAD+ E+ IGA+F+D + +V + F ++P
Sbjct: 1683 ANRTPTRMDFWLHASL---PPKVLADVAEALIGAMFVDAKYNYSVVNQFFTRFVEPYFTE 1739
Query: 225 MISPETLKT-HPVTELYEVCQKNKLKVKFVDLWKESTA 261
M+ +T + HPVT L C+K + ++ V+ W+ S
Sbjct: 1740 MVLYDTFASQHPVTVL---CKKMQQELCCVN-WRISVG 1773
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
YERLE++GDS L + T F L P R + + L ++ LH+Y+R
Sbjct: 1403 YERLEFLGDSFLKMATTISLFTLIPESNECGYHAERVLLICNQNLFNHGVEHNLHQYIRS 1462
Query: 160 NK-------PLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
P L + + ++ + + L A K +AD+ E+ IGA ++
Sbjct: 1463 KSFDRRAWYPDLPLKKGKVTKTTMTHDL-------ADKTIADVCEALIGAAYL 1508
>gi|341893002|gb|EGT48937.1| CBN-DCR-1 protein [Caenorhabditis brenneri]
Length = 1927
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 22/203 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GYRF + L +AFT S + Y+RLE++GD+VL+ ++T+ F P
Sbjct: 1663 EEKIGYRFKERAYLVQAFTHASYSNNRVTGCYQRLEFLGDAVLDYMITRFLFEDVRQYSP 1722
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN----- 183
G LT LRSA VN A +A+K K+ P L I +F + D +N
Sbjct: 1723 GVLTDLRSALVNNTIFASLAVKYEFQKHFIAMCPGLHHMIEKFVQLCADRNFDTNFNAEM 1782
Query: 184 --------------GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE 229
V+ PK L D+ ES GA+++D ++D W+V +++ I
Sbjct: 1783 YMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRSTIE-S 1841
Query: 230 TLKTHPVTELYEVCQKNKLKVKF 252
P + + E+ + K +F
Sbjct: 1842 CCANPPRSPIRELMELESSKARF 1864
>gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis]
gi|238064965|sp|B3DLA6.2|DICER_XENTR RecName: Full=Endoribonuclease Dicer
gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus (Silurana) tropicalis]
Length = 1893
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1641 EKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1700
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1701 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDF----VQFQLEKNEMQGM 1756
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW V+ +++P+I
Sbjct: 1757 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKF 1816
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1817 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1872
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1873 SAAARRALRSLK 1884
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K G
Sbjct: 1287 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKG 1341
>gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
Length = 1546
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
EE LGY F LL A T PS P R Y+RLE++GDS+L+++ ++ F +P+
Sbjct: 1278 EEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDR 1337
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P L+ + A V+ + L +++KLG H+ + L+ QI + E I S G
Sbjct: 1338 DPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQG-- 1395
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTELY 240
L D+VE+ +GA+F+D ++ F+ +KP ++ HP T L+
Sbjct: 1396 ---ACLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLH 1451
>gi|315258243|gb|ADT91700.1| dicer-like protein 2 [Nicotiana attenuata]
Length = 239
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 59 SESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLT 116
+E L N L E +L Y+F++ +LL EA T S PE Y+RLE++GD+VL+ +T
Sbjct: 117 AEKLVNVRYL--ESLLDYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYAVT 174
Query: 117 KEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI 168
+F YP L PG +T LRSA+VN E A+ A+K GLHK++ H L+ QI
Sbjct: 175 AHLYFKYPGLSPGFITDLRSASVNNECYAQAAVKAGLHKHILHASQDLQRQI 226
>gi|340514590|gb|EGR44851.1| predicted protein [Trichoderma reesei QM6a]
Length = 1416
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 100/212 (47%), Gaps = 33/212 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSC--PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EI GYRF L AF PS Y+RLE++GD +L++ + F +P P
Sbjct: 1130 EITGYRFKAAPLARSAFRHPSYVFENNIRDYQRLEFLGDGLLDMAIVDFLFKRFPEADPK 1189
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYL------------RHNKPLLEEQIREFSEAILD 177
LT ++A V+ + L + +KLGLHK++ R+ L EQ E + L
Sbjct: 1190 WLTEHKTAMVSNQFLGCLCVKLGLHKHILLATSSLLGDIGRYAAQL--EQAEETARQTLR 1247
Query: 178 YPLHS---NGLVDA---PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
S N VD PKVLAD+VE+ +GA+F+D S +V F + ++P L
Sbjct: 1248 AEAESIPQNFWVDVPQPPKVLADVVEALVGAMFVDSEYSFSVVLDFFTKFIQPYFEDMAL 1307
Query: 232 KT-----HPVTELYEVCQKNKLKVKF-VDLWK 257
+ HPVT L +KL+ F + WK
Sbjct: 1308 YSSFASNHPVTTL-----AHKLEADFCCNQWK 1334
>gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
Length = 1546
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
EE LGY F LL A T PS P R Y+RLE++GDS+L+++ ++ F +P+
Sbjct: 1278 EEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDR 1337
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P L+ + A V+ + L +++KLG H+ + L+ QI + E I S G
Sbjct: 1338 DPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQG-- 1395
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTELY 240
L D+VE+ +GA+F+D ++ F+ +KP ++ HP T L+
Sbjct: 1396 ---ACLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLH 1451
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F N LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V K + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVKFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQL 226
>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
Length = 247
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 116/248 (46%), Gaps = 47/248 (18%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---------SYERLEYVGDSVLNLLLTKEQFF 121
E+ +GY F N LLEEA T PS FF ++RLE++GD+VL L +T++ F
Sbjct: 7 EKKMGYAFKNPQLLEEALTHPS----FFVESIRVNKGDFQRLEFLGDAVLGLAVTEKLFQ 62
Query: 122 LYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH 181
L+P+ G LT+LR+ V+ + L +A L + KYLR K + Q R
Sbjct: 63 LFPSFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKGEEKNQGR------------ 110
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI-----SPETLKTHPV 236
P LA+ +ES IGA+++D D EL P+ P H
Sbjct: 111 -----TKPSNLANALESVIGALYLD--GGWDRAKSFIFELFNPLFMELEKDPMRFVEHEN 163
Query: 237 TE--LYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRA 287
++ L E QK ++ + ES H + ++Q+LG+G+ KKE A RA
Sbjct: 164 SKGLLQEFLQKKGTELPIYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKE-AELRA 222
Query: 288 AKDALNNI 295
AK+A +
Sbjct: 223 AKEAFEKL 230
>gi|85712960|ref|ZP_01043999.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
gi|85693198|gb|EAQ31157.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
Length = 228
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 116/250 (46%), Gaps = 39/250 (15%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
SLP E+I+GYRF ++LL++A T S ERLE++GDS+L +++ + F
Sbjct: 2 SLPKPPLTQLEQIIGYRFERQSLLKQALTHRSAHANH--NERLEFLGDSILGVVIAEALF 59
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL 180
+P + G L+R+R+A V LAR+ K GL YL + L+
Sbjct: 60 SRFPKVAEGDLSRMRAAIVCGRSLARLGKKKGLGDYLSLGQGELK--------------- 104
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKV----FKELLKPMISPETLKTHPV 236
+G +LAD +E+ IGA+F+D S +D V +V F+E L+ I P + P
Sbjct: 105 --SGGYRRESILADAMEAIIGAIFLD--SDMDTVKQVVLGWFEEQLE-TIKPGASQKDPK 159
Query: 237 TELYEVCQKNKLKVKFVDLWKESTAFH-------IFIE---DQLLGRGAYAPKKEIAHNR 286
T L E Q + + D+ H IE + LLG G K E A
Sbjct: 160 TRLQEWLQARQRPLPEYDVVATQGQAHNQQFTVTCTIEGLPEPLLGTGTSRRKAEQA--- 216
Query: 287 AAKDALNNIE 296
AA AL ++
Sbjct: 217 AATSALEQLQ 226
>gi|342872111|gb|EGU74508.1| hypothetical protein FOXB_14953 [Fusarium oxysporum Fo5176]
Length = 1500
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 28/190 (14%)
Query: 75 GYRFNNKNLLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP---PGS 130
GYRF + L++ AF PS P E Y+RLE++GDS+L++ + +LY N P P
Sbjct: 1211 GYRFKSAQLVQSAFKHPSWPYESVPDYQRLEFLGDSLLDMAIVD---YLYQNFPRADPQW 1267
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------------LD 177
LT + A V+ + L + +KLGLH++L + L QIR++ + +
Sbjct: 1268 LTEHKMAMVSNQFLECLCVKLGLHQHLLSSTSSLLSQIRDYVVELEVAEENAHKEAKEVG 1327
Query: 178 YPLHSN---GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--- 231
P+ + + APKV AD++E+ +GA+F+D +V F + ++P L
Sbjct: 1328 TPMRKDFWLKVGSAPKVYADVIEALVGAMFVDSKYKFSVVENFFTKFIQPYFQDMRLYDT 1387
Query: 232 --KTHPVTEL 239
HPVT L
Sbjct: 1388 FANKHPVTFL 1397
>gi|187477630|ref|YP_785654.1| ribonuclease III [Bordetella avium 197N]
gi|123514189|sp|Q2KWY0.1|RNC_BORA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|115422216|emb|CAJ48740.1| ribonuclease III [Bordetella avium 197N]
Length = 251
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 94/196 (47%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E LG+ F ++ LLE+A T S R ERLE++GDSVLN ++ F Y L G
Sbjct: 7 ETRLGHHFGDQALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYAKLDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+R+R+ V LA +A +L L YLR L E +++ +G P
Sbjct: 65 LSRVRANLVKQASLADIAQRLELSPYLR----LGEGEMK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D D KV ++ P+++ PETL T L E Q K
Sbjct: 108 ILADAVEALFGAVFLDAG--FDAARKVIEQQYVPVLANVDPETLGKDAKTLLQEFLQGRK 165
Query: 248 LKVKFVDLWKESTAFH 263
L + + A H
Sbjct: 166 LALPLYTVVATHGAAH 181
>gi|304316939|ref|YP_003852084.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778441|gb|ADL69000.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 232
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 32/238 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E+ +GY FNNK LL+ A S S ERLE++GDSVL++++++ + +L
Sbjct: 11 EKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIISEYLYKSRSDL 70
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G L++ RS V LAR A ++ L KYL K EE G
Sbjct: 71 EEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKG--EEM---------------TGGR 113
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
+ +LAD +E+ I A+++D + ++ DIV ++F E++K ++S + + T+L EV Q
Sbjct: 114 NRESILADAMEALIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYK-TKLQEVTQ 172
Query: 245 K---NKLKVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
K K+ K D + + +++ + LGRG KKE A AA +AL+ +
Sbjct: 173 KMGSEKIIYKLTDEYGPDHNKMFVIEVYVGENRLGRGMGRSKKE-AEQYAAMEALSKM 229
>gi|380706515|gb|AFD97515.1| dicer, partial [Hymenolepis microstoma]
Length = 1897
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 98/247 (39%), Gaps = 66/247 (26%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC------------PERFF----SYERLEYVGDSVLNLL 114
E +GYRF N+ LL EA T +C P F YERLE++GD+VL+
Sbjct: 1608 ENTIGYRFKNRRLLIEALTHSTCRDLHSNPSVNNTPSSVFFGNGGYERLEFLGDAVLDYT 1667
Query: 115 LTKEQFFLYPN-----LPPGSLTRLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEEQI 168
+T+ F L PG LT LRSA VN +A+ GLH YLR P L E
Sbjct: 1668 VTRVLFESTDGETVRELSPGGLTDLRSALVNNAVFGALAVTHCGLHAYLRGTAPYLTEGT 1727
Query: 169 REFSEAILDYPLHS-------------------------NGLV--------DAPKVLADI 195
F I + S +G V + PK L D+
Sbjct: 1728 SAFLRHIRNVSRGSLNSKRLLTPDSNTVARLNDAENQADSGAVRPSNEMEAEVPKALGDV 1787
Query: 196 VESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDL 255
ES GAVF+D ++ +W++F LL+ I E Y C + ++
Sbjct: 1788 FESLAGAVFLDSGLCLNTLWRIFFPLLRERI-----------ERYSTCVAKSPVRRLLEQ 1836
Query: 256 WKESTAF 262
+ E F
Sbjct: 1837 YPERVKF 1843
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 97 FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAI 149
F + ERLE +GDS L +T + YP+ GSL+ RS V L R
Sbjct: 1429 FINMERLETIGDSFLKFAVTTYLYLKYPDAQEGSLSLFRSHVVENSNLYRFGC 1481
>gi|393220706|gb|EJD06192.1| hypothetical protein FOMMEDRAFT_145449 [Fomitiporia mediterranea
MF3/22]
Length = 1473
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 114/239 (47%), Gaps = 17/239 (7%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP--ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+E L Y F N LL EA PS E + Y+RLE++GD+V+ L++T + +P
Sbjct: 1134 QEDLQYTFRNGKLLVEAVKHPSFDFLENYPCYQRLEFLGDAVIELVVTTYLYNKFPGANS 1193
Query: 129 GSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIRE----FSEAILDYPLHSN 183
G ++ R+ + LA +A+ +L LHKYL N L E + + S A + ++
Sbjct: 1194 GQMSWARARAICNTTLAALAVNRLSLHKYLLANCVELSEDVAKEVEILSAASYEDVSLND 1253
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---MISPETLKTHPVTELY 240
D PKVL DI ES IGAVF+D I + +EL+K ++ P+ + PV+ L
Sbjct: 1254 WRYDPPKVLGDIFESVIGAVFVDSGFDYTITAPIIEELMKDVLVLLHPD-IPYDPVSRLL 1312
Query: 241 E-VCQKNKLKVKFVDLWK-----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
+ V + ++ KF + I D+++ A K +A A+ A+
Sbjct: 1313 QWVAKSGCMRAKFQRTQTNPRVNRKDGVVVLIHDRIVAGPITAANKPLAKGLVAEKAMQ 1371
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
NL+ EA T PS F + +RLE +GDSVL L + F +PN G LT L+ +V+
Sbjct: 961 NLIVEALTLPSAMAGF-NNQRLETMGDSVLKLSVVVYIFNAFPNRHEGQLTALKENSVSN 1019
Query: 142 EKLARVAIKLGLHKYL 157
L A ++ L ++L
Sbjct: 1020 RLLLARAKEVHLERFL 1035
>gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1]
gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1]
Length = 231
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 101/186 (54%), Gaps = 24/186 (12%)
Query: 66 NNLDE-EEILGYRFNNKNLLEEAFTDPSCP-ERFF--SYERLEYVGDSVLNLLLTKEQFF 121
+N++E EE++GYRF NK+LL EA T S E+ +YERLE++GDSVL L++T+
Sbjct: 2 SNIEELEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLVI 61
Query: 122 LYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH 181
Y G L++ RS V+ + ++ +A+K+ L+ +L K E +
Sbjct: 62 KYKEFKEGVLSKYRSFFVSEDIISEIALKIRLNDFLMLGK----------GEIV------ 105
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTEL 239
+G P +LADI ES +GAV++D N + IV + EL+ I + P TEL
Sbjct: 106 -SGGYTKPSILADIFESLLGAVYLDGGYNEARRIVLMLMSELMDEYIEKGII-IDPKTEL 163
Query: 240 YEVCQK 245
++ Q+
Sbjct: 164 QKITQQ 169
>gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-]
gi|1351642|sp|Q09884.1|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein
dcr1; AltName: Full=RNA interference pathway protein
dcr1; Includes: RecName: Full=Endoribonuclease dcr1;
Includes: RecName: Full=ATP-dependent helicase dcr1
gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe]
Length = 1374
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 9/150 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE +GY F NK LL AF PS + + +Y++LE++GD+VL+ ++ + + YPN
Sbjct: 1087 EETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNAT 1146
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG--- 184
G LT +S V + L+ + L LHKY++H + + I E+ E I + ++
Sbjct: 1147 SGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENPW 1206
Query: 185 ---LVDAPKVLADIVESTIGAVFIDCNSSI 211
+D+PK ++D +E+ I A+F+D S+
Sbjct: 1207 FWFEIDSPKFISDTLEAMICAIFLDSGFSL 1236
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKY- 156
F Y+RLE+ GD L L + F +P+ L R ++ L +VAI L KY
Sbjct: 927 FDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYA 986
Query: 157 ------LRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSS 210
+RH P F ++ D ++ + K +AD+VE++IGA +D S
Sbjct: 987 LSTPLEIRHWCPY------GFQKSTSDKCRYAVLQKLSVKRIADMVEASIGACLLD--SG 1038
Query: 211 IDIVWKVFKEL 221
+D K+ K L
Sbjct: 1039 LDSALKICKSL 1049
>gi|406929771|gb|EKD65281.1| hypothetical protein ACD_50C00142G0004 [uncultured bacterium]
Length = 220
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 112/233 (48%), Gaps = 32/233 (13%)
Query: 77 RFNNKNLLEEAFTDPS----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
+F N L ++AFT S E+ S ERLE++GDS+L+ +++ F Y GSLT
Sbjct: 6 KFRNAKLFQQAFTHRSYLNEVKEKTPSNERLEFLGDSILSFIVSTSLFNRYKEFNEGSLT 65
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
LRS VNT+ L+++A +L L +K E + R+ P +L
Sbjct: 66 NLRSLLVNTKTLSKIAQELNFGDLLMLSKGEEESKGRQ-----------------NPTLL 108
Query: 193 ADIVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
A+ E+ +GA+FID S + V + +I ETLK P + L E+ Q K K
Sbjct: 109 ANCFEAYVGALFIDQGIEESSKFINSVLLSKVDEIIQKETLK-DPKSILQEIVQAKKQKS 167
Query: 251 KFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ +ES H F+ + ++G+G K+IA AAK AL+ ++
Sbjct: 168 PIYKVVEESGPAHDKLFTVGAFVGENMVGKGT-GRSKQIAEENAAKVALSKLQ 219
>gi|163856074|ref|YP_001630372.1| ribonuclease III [Bordetella petrii DSM 12804]
gi|229564350|sp|A9IIJ2.1|RNC_BORPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|163259802|emb|CAP42103.1| Ribonuclease III [Bordetella petrii]
Length = 252
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L +RF N LLE+A T S R ERLE++GDSVLN ++ F +P L G
Sbjct: 7 ETRLDHRFGNAALLEQALTHRSHSARH--NERLEFLGDSVLNFVVAAMLFERFPKLDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA + +L L +YLR L E +++ +G P
Sbjct: 65 LSRLRANLVKQASLADIGQRLELSQYLR----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GA F+D D KV +P+++ P+TL T L E Q K
Sbjct: 108 ILADAVEAIFGAAFLD--GGFDTARKVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRK 165
Query: 248 LKVKFVDLWKESTAFH 263
L + + A H
Sbjct: 166 LALPLYTVVATHGAAH 181
>gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON]
gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON]
Length = 228
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 39/240 (16%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCP-ERFFSY--ERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
++LGYRFN+ N L+EA T S E Y ERLE +GDSVLN+++T F YP L
Sbjct: 9 DLLGYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFVTYPELSE 68
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKY--LRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L++LRS V+ + L +VA + L Y L + L +R
Sbjct: 69 GNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLSHGDMR----------------- 111
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFK-ELLKPMISPETLKTH---PVTELYEV 242
P LAD VE+ IGAV++D KVF LL P+I ++ +EL E
Sbjct: 112 --PSTLADTVEAIIGAVYLDGGFD---AAKVFVLSLLAPIIEETAAISNFNDYKSELQER 166
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q + ++ +E H + ++ + +GRG+ KK+ A +AA+ AL+ +
Sbjct: 167 LQIDGYSDIKYEIIREEGPDHDKMFFAEVKVDGKPVGRGSGRSKKD-AEQKAAQQALSEL 225
>gi|125570782|gb|EAZ12297.1| hypothetical protein OsJ_02188 [Oryza sativa Japonica Group]
Length = 234
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 100/162 (61%), Gaps = 6/162 (3%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAI-KLGLHKYLR 158
++RLE++GD+ L L + P L G LT LRSANV+T+KLARVA+ + R
Sbjct: 39 HQRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRR 98
Query: 159 HNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVF 218
+N + ++ F++++ + P +S ++ P+VLADIVE+ +GAV++D ++++ KV
Sbjct: 99 YNCAPQDHEVSRFTKSV-EGP-YSGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVA 156
Query: 219 KELLKPMISPETLKTHPVTELYEVCQKNK--LKVKFVDLWKE 258
K L +P+I+ + L P + L E+ +++ L++K + W++
Sbjct: 157 KLLCEPIITKKALLEDPESMLNELGGEHREDLEIKIL-AWRK 197
>gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999]
Length = 241
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 29/191 (15%)
Query: 52 KAGDESESESLPNANNLDE----EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVG 107
KA S S+ PN ++D + ++ Y+FN+ +LL++A T S + ERLE++G
Sbjct: 3 KASAGSSSQQ-PNTASIDPFVKLQRLIDYQFNDVSLLKQALTHKSAHRQH--NERLEFLG 59
Query: 108 DSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ 167
D+VL +++ + F +PN P G LTR+RSA V + LA +A++ GL ++++ L+
Sbjct: 60 DAVLGMIVGEHLFKAFPNSPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELK-- 117
Query: 168 IREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKEL---L 222
+G +LAD+VES IGA+++D N D + F L
Sbjct: 118 ---------------SGGKQRYSILADVVESIIGAIYLDAGMNQCYDFIHAWFGARIAKL 162
Query: 223 KPMISPETLKT 233
P + P+ KT
Sbjct: 163 DPDVHPKDAKT 173
>gi|58584360|ref|YP_197933.1| ribonuclease III [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|75498100|sp|Q5GTI3.1|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 243
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 36/244 (14%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+I+ YRF N +LEEA T PS +R +YERLE++GDS+LN++++ F L+P
Sbjct: 20 KIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLFPKE 79
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L R ++ V +A VA ++ L ++ I++ NG
Sbjct: 80 KEGALARRKTDLVCGNTIANVAKEIKLGNFI-----------------IMNNSERCNGGK 122
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID + V K ++E K M+S L P T L E Q
Sbjct: 123 RNLKNLENALEALIGAIYIDGGFANVKKFVTKHWEERAKGMLS---LPQDPKTSLQEWTQ 179
Query: 245 KNKLKVKFVDLWKE-----STAFHIFIEDQLLGRG-AYAPKKEIAHNRAAK---DALNNI 295
KNKL + +L K+ S F I I + G+ A A K++A +AA+ + +NN
Sbjct: 180 KNKLPLPEYELMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEKINNS 239
Query: 296 ERLL 299
E+ +
Sbjct: 240 EKTI 243
>gi|409046535|gb|EKM56015.1| hypothetical protein PHACADRAFT_122116 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1496
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 29/209 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+EILGY F + +LL EA T PS P SY+RLE++GD++++L++ + + +P
Sbjct: 1113 QEILGYEFKSGHLLIEAVTHPSFRSPTNS-SYQRLEFMGDALIDLVVMRYLYNKFPTATS 1171
Query: 129 GSLTRLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEEQIREFSEAILDYP-------- 179
G L+ RS V LA +A+ LGLH +PLL I E S AI Y
Sbjct: 1172 GQLSWARSRAVCAPALAHIAVNVLGLH------RPLLINNI-ELSMAISKYVPILQETSE 1224
Query: 180 ---LHSNGLVDAPKVLADIVESTIGAVFIDCNSSID----IVWKVFKELLKPMISPETLK 232
+HS D PK ++D++ES +GAV +D + + + I + LL+ ++SP+ +
Sbjct: 1225 EEIIHSGWKHDPPKAISDVLESILGAVLVDTHYNFEKTAVIAENALRGLLR-VLSPD-MP 1282
Query: 233 THPVTELY-EVCQKNKLKVKFVDLWKEST 260
PV+EL + ++ +K+ F +ST
Sbjct: 1283 RDPVSELMVWIARQGCMKISFRKSQSQST 1311
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG +L+ +A T PS F+ +RLE +GDSVL L F +P+ G L
Sbjct: 936 LGLPPIQDDLMIQALTLPSA-NAGFNNQRLETLGDSVLKLCTVVHLFNRFPHRHEGQLDI 994
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS---EAILDYPLHSNGLV-DAP 189
LR +V+ L A ++ L +YL + +I F+ E L P+ + P
Sbjct: 995 LRRNSVSNRTLLARAKEVMLEQYLTSEPQTM--RIWRFALSGEVDLSDPMPDRFVSRRIP 1052
Query: 190 K-VLADIVESTIGAVF 204
K L D +E+++GA F
Sbjct: 1053 KRSLQDCMEASLGAGF 1068
>gi|322798617|gb|EFZ20221.1| hypothetical protein SINV_06556 [Solenopsis invicta]
Length = 386
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 23/189 (12%)
Query: 86 EAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEK 143
+AFT PS + Y+RLE++GD++L+ L+T + NL PG LT LRSA VN
Sbjct: 150 QAFTHPSYTANGLTECYQRLEFLGDAILDFLITCYIYEKCGNLSPGELTDLRSALVNNIT 209
Query: 144 LARVAIKLGLHKYLRHNKPLLEEQIREFS--EAILDYPLHSNGL--------------VD 187
A +A++ GLH L P L+E I F + DY ++ L VD
Sbjct: 210 FACLAVRYGLHIALLAYAPKLDEIIDRFVKFQEDRDYVVNDELLYVLIEEEECNLVEYVD 269
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYEVCQK 245
PKVL D+ ES IGA+++D + +W++ L+ I ++ PV +YE
Sbjct: 270 VPKVLGDLFESLIGAIYLDSGKDLVKIWEIIYTLMHKEIDEFSRSIPKQPVRVIYE---H 326
Query: 246 NKLKVKFVD 254
L+ KF++
Sbjct: 327 TDLRPKFLE 335
>gi|433655086|ref|YP_007298794.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433293275|gb|AGB19097.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 232
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 119/238 (50%), Gaps = 32/238 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E+ +GY FNNK LL+ A S S ERLE++GDSVL++++++ + +L
Sbjct: 11 EKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIISEYLYKSRSDL 70
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G L++ RS V LAR A ++ L KYL K EE G
Sbjct: 71 EEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKG--EEM---------------TGGR 113
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
+ +LAD +E+ I A+++D + ++ DIV ++F E++K ++S + + T+L EV Q
Sbjct: 114 NRESILADAMEALIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYK-TKLQEVTQ 172
Query: 245 K---NKLKVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
K K+ K D + + +++ LGRG KKE A AA +AL+ +
Sbjct: 173 KMGSEKIIYKLTDEYGPDHNKMFVIEVYVGGNRLGRGMGRSKKE-AEQYAAMEALSKM 229
>gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis]
Length = 2053
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 121/278 (43%), Gaps = 49/278 (17%)
Query: 60 ESLPNANN-LDE--------EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGD 108
E PN N LD+ E + Y F NK L +AFT S + Y+RLE++GD
Sbjct: 1771 ECRPNQQNKLDQLLVALSGFERKINYTFKNKAYLLQAFTHASYYYNTVTDCYQRLEFLGD 1830
Query: 109 SVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI 168
+VL+ L+T+ F + PG+LT LRSA VN A +A+ HKY + P L I
Sbjct: 1831 AVLDFLITRHLFNDERHHSPGALTDLRSALVNNTIFASLAVHYDFHKYFKSISPELHHII 1890
Query: 169 REF--------------SEAILDYP---------------LHSNGLVDAPKVLADIVEST 199
+F + + DY N V+ PK L DI ES
Sbjct: 1891 EDFVMYQQKQEDAQGMDAHLMRDYDRVEIVAPSSLEKDEEEGENEDVEVPKALGDIFESV 1950
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYEVCQKNKLKVKFVDLWK 257
GA+++D + VWKV+ ++ P+I + PV EL E+ KF K
Sbjct: 1951 AGAIYMDSGMDLSSVWKVYSVMMLPLIEKFSACVPRSPVRELLEM---EPETAKFSCAEK 2007
Query: 258 ESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKDAL 292
+ + +++G+G + IA + AA+ AL
Sbjct: 2008 RYDG-KVRVTVEIIGKGRFKGVGRSYRIAKSAAARRAL 2044
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T + YP G L+ +RS V+ L R+ + GL
Sbjct: 1474 FNLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKVSNYNLYRIGKQFGL 1529
>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
Length = 236
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 33/240 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP----ERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPN 125
E+I+GY F NK+++ A T S R Y ERLE++GDSVL L +++ F PN
Sbjct: 14 EDIIGYTFKNKDIIFAAVTHSSYANEKKSRKLKYNERLEFLGDSVLGLTISEYLFQKKPN 73
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G L+ R+ V L++ A +GL KYL K E++ E I
Sbjct: 74 LPEGELSVTRAKIVCENSLSQCATDIGLGKYLLLGKG---EELSGGREKI---------- 120
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+L+D E+ IGA++ID ++ +++ +++K I + + T+L E+
Sbjct: 121 ----SLLSDAFEALIGALYIDGGFETAKSFIYRYMDKIIKSCIEGKLFYDYK-TQLQELV 175
Query: 244 QKN---KLKVKFVDLW----KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
Q+N ++ D + ++ + I + GRG KKE N AAK+ALNN++
Sbjct: 176 QQNGEQQITYSVTDQFGPDHNKTFITEVKINGAIQGRGKGHSKKEAEQN-AAKNALNNLK 234
>gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
gi|81363596|sp|Q5R106.1|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
Length = 229
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 24/190 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
SLP + E+I+GY F + LL +A T S ERLE++GDS+L L++ + +
Sbjct: 2 SLPKPPLTELEKIVGYSFEQQGLLHQAMTHRSASSTH--NERLEFLGDSILGLVIAEALY 59
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL 180
+P + G L+R+R+A V LA++ K+GL +L + L+
Sbjct: 60 QKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELK--------------- 104
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---MISPETLKTHPVT 237
+G +LAD VE+ IGA+++D S +D + +V +P +I P T + P T
Sbjct: 105 --SGGYRRESILADAVEAIIGAIYLD--SDMDTIRQVILNWFEPQLTLIEPGTSQKDPKT 160
Query: 238 ELYEVCQKNK 247
L E+ Q +
Sbjct: 161 RLQELLQARQ 170
>gi|99035124|ref|ZP_01314908.1| hypothetical protein Wendoof_01000254 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 234
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 37/241 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+I+ Y+F N +LEEA T PS +R SYERLE++GDSVLN++++ F L+P
Sbjct: 12 KIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFPEE 71
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L + ++ V +A VA ++ L ++ I++ NG
Sbjct: 72 KEGALAKRKTDLVCGNTIANVAKEIKLGSFI-----------------IMNNSERCNGGR 114
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID + + + +++L K M+ P P T L E Q
Sbjct: 115 CNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDP---PQDPKTSLQEWTQ 171
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIEDQLLGR-GAYAPKKEIAHNRAAKDALNNIE 296
KNKL + +L K++ H + IED G+ A A K+IA +AA+ L I
Sbjct: 172 KNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKAAELMLEKIG 229
Query: 297 R 297
+
Sbjct: 230 K 230
>gi|42521037|ref|NP_966952.1| ribonuclease III [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225630900|ref|YP_002727691.1| ribonuclease III, putative [Wolbachia sp. wRi]
gi|225677311|ref|ZP_03788288.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|81652137|sp|Q73FT3.1|RNC_WOLPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807910|sp|C0R4Q8.1|RNC_WOLWR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|42410778|gb|AAS14886.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225590638|gb|EEH11888.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225592881|gb|ACN95900.1| ribonuclease III, putative [Wolbachia sp. wRi]
Length = 232
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 37/241 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+I+ Y+F N +LEEA T PS +R SYERLE++GDSVLN++++ F L+P
Sbjct: 10 KIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFPEE 69
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L + ++ V +A VA ++ L ++ I++ NG
Sbjct: 70 KEGALAKRKTDLVCGNTIANVAKEIKLGSFI-----------------IMNNSERCNGGR 112
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID + + + +++L K M+ P P T L E Q
Sbjct: 113 CNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDP---PQDPKTSLQEWTQ 169
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIEDQLLGR-GAYAPKKEIAHNRAAKDALNNIE 296
KNKL + +L K++ H + IED G+ A A K+IA +AA+ L I
Sbjct: 170 KNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKAAELMLEKIG 227
Query: 297 R 297
+
Sbjct: 228 K 228
>gi|116333590|ref|YP_795117.1| ribonuclease III [Lactobacillus brevis ATCC 367]
gi|116098937|gb|ABJ64086.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367]
Length = 229
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 34/233 (14%)
Query: 78 FNNKNLLEEAFTDPSC----PERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
F +++LL+EAFT S P + YER+E++GD+V+ L+++ F YP +P G LT
Sbjct: 17 FKDQSLLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVMQLVVSNYIFRRYPAMPQGRLT 76
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
RLR+A VN + A A + +Y+R + + Q R+ +L
Sbjct: 77 RLRAAMVNEQSFASFARECHFDQYIRLGRGEEKAQARQ-----------------RDSLL 119
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQKNK-LK 249
DI ES IGA+++D +D V + ++ P + TEL E+ QKN +
Sbjct: 120 CDIFESFIGALYMD--QGLDKVVEFVTTVVFPKLDEGRFDEFFDHKTELQELVQKNGPVD 177
Query: 250 VKFVDLWKES----TAFH--IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ + L +E AF ++++D+LLG G KK N AA+ AL N++
Sbjct: 178 IDYRLLDEEGPDNDRAFKVAVYVDDKLLGEGHGHSKKHAEQN-AARHALENLK 229
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI-SPETLKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I + E L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGEYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQL 226
>gi|412341945|ref|YP_006970700.1| ribonuclease III [Bordetella bronchiseptica 253]
gi|408771779|emb|CCJ56583.1| ribonuclease III [Bordetella bronchiseptica 253]
Length = 256
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 94/196 (47%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L +RF +K LLE+A T S R ERLE++GDSVLN ++ F Y L G
Sbjct: 10 ETRLDHRFGDKALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYGKLDEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +L L +YLR L E +++ +G P
Sbjct: 68 LSRLRANLVKQASLADIAQRLDLSQYLR----LGEGELK-------------SGGFRRPS 110
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D + +V +P+++ P+TL T L E Q K
Sbjct: 111 ILADTVEALFGAVFLDAG--FEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRK 168
Query: 248 LKVKFVDLWKESTAFH 263
L + + A H
Sbjct: 169 LALPLYTVVATHGAAH 184
>gi|304310579|ref|YP_003810177.1| ribonuclease III [gamma proteobacterium HdN1]
gi|301796312|emb|CBL44520.1| Ribonuclease III [gamma proteobacterium HdN1]
Length = 231
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 92/179 (51%), Gaps = 21/179 (11%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY FN+ NLL A T S + + ERLE++GDSVLNL++ E F +P G L+R
Sbjct: 11 IGYTFNDFNLLNLALTHRSVSGQT-NNERLEFLGDSVLNLIIGGELFTKFPQGKEGQLSR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR++ V E LA++ + GL ++L IL H +G LA
Sbjct: 70 LRASLVRGETLAQIGGEFGLGEFL-----------------ILGPGEHKSGGARRESTLA 112
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA+F + N + +V + F ++ + +T+K + T L E+ Q K+ +
Sbjct: 113 DAVEAIIGAIFCESGYNEARKVVLRWFDSRIQALTLNDTVKDNK-TRLQEILQHLKMGL 170
>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
gi|189043307|sp|A4J683.1|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
Length = 246
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 121/239 (50%), Gaps = 33/239 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG++++N LL +A T SC + +RLE++GD+VL L++++ + ++P+
Sbjct: 15 LGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKMFPDRTE 74
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT++R+++V LA+VA L L + LR + EE+ +G +
Sbjct: 75 GELTKMRASSVCEPSLAKVARGLDLGRCLRMGRG--EER---------------SGGRER 117
Query: 189 PKVLADIVESTIGAVFIDCNSSID--IVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
P +LAD E+ +GA+++D I V ++ +++ + + TEL E+ Q++
Sbjct: 118 PSILADAFEALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYK-TELQEILQQS 176
Query: 247 KLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+ ES H + + +++G+G+ KKE A +AAKDA ++E +
Sbjct: 177 SPDPLTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSKKE-AEQQAAKDAFQHLEGM 234
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F N LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQL 226
>gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group]
Length = 1632
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 20/144 (13%)
Query: 81 KNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVN 140
K+LLEE P+CP+R LE++GD+VL ++T + YP++ PG +T LRS V
Sbjct: 1298 KDLLEE----PACPKR------LEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVG 1347
Query: 141 TEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD------APKVLAD 194
+ LA A++ +HK+L + L I +F Y SN D PK L D
Sbjct: 1348 NDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM----YVKLSNSEKDLLEEPACPKALGD 1403
Query: 195 IVESTIGAVFIDCNSSIDIVWKVF 218
IVES IGAV +D +++ VWK +
Sbjct: 1404 IVESCIGAVLLDSGFNLNYVWKNY 1427
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE++GY+F +K LL +AF PS + Y++ E++GD+VL ++T + YP++ PG
Sbjct: 1186 EELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQKTEFLGDAVLEYVITSYLYSTYPDIKPG 1245
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
+T LRS V + LA A++ +HK+L + L I +F
Sbjct: 1246 QITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKF 1287
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
S P A+ + IL EA T C ER S ER E +GD+ L ++ + +F
Sbjct: 983 SFPEASQISASGIL-----------EALTTEKCLERI-SLERFEVLGDAFLKYVVGRHKF 1030
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
Y L G LTR RS VN L ++I+ L Y+R
Sbjct: 1031 ITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1068
>gi|449543396|gb|EMD34372.1| hypothetical protein CERSUDRAFT_55073 [Ceriporiopsis subvermispora B]
Length = 1702
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 13/193 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+E+LG++F + LL EA T PS SY+RLE++GD++++L++ + +F YP G
Sbjct: 1126 QEVLGHQFKHGQLLLEAVTHPSFGSYETTSYQRLEFLGDALIDLVVMRYLYFKYPRATSG 1185
Query: 130 SLTRLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEEQIREFS---EAILDYPLHSNGL 185
L+ RS V LA VA+ L LHK + N L I ++ + I + + +NG
Sbjct: 1186 QLSWARSRAVCASALAWVAVNCLELHKMMLVNNVGLSVAIGKYVPILKEISNIDIINNGW 1245
Query: 186 -VDAPKVLADIVESTIGAVFIDCNSSID----IVWKVFKELLKPMISPETLKTHPVTELY 240
D PK ++D++ES +GAV +DC + +V +LL +++P+ L P++EL
Sbjct: 1246 KQDPPKAISDVLESVLGAVLVDCGYDFEKAAAVVELTMADLLA-VLTPD-LPRDPISELM 1303
Query: 241 EVCQKNK-LKVKF 252
++K K+ F
Sbjct: 1304 VWAAQSKCCKITF 1316
>gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1450
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 50/259 (19%)
Query: 60 ESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQ 119
E+LP + D E ++GY FN K L +AFT PS P SY+RLE++GDS+L+ ++
Sbjct: 1129 ENLPTSWFRDIESLVGYTFNKKVFLAQAFTHPSNPGSTMSYQRLEFLGDSILDHIIVDHL 1188
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAI--------------------------KLGL 153
F N P + +R++ N + LA + I K+ L
Sbjct: 1189 FNSPRNFPHVDMHLMRASLANADFLAFLCIGMTTDEERGEIVEASRNGTFTRMTTRKISL 1248
Query: 154 HKYLRHNKPL-----LEEQIREFSEAILD----------YPLHSNGLVDAPKVLADIVES 198
+Y+RH ++ + ++ D YP + A K +D++ES
Sbjct: 1249 WQYMRHGTSWELTVSQQQTVNQYQALKADITKALYEADTYPWALLSRLRAQKFFSDLIES 1308
Query: 199 TIGAVFIDCNSSIDIVWKVFKEL-----LKPMISPETLKTHPVTELYEVCQKNKLKVKFV 253
+GA+FID + S+D + + L+ ++ E HP L E+ + +++ + V
Sbjct: 1309 VLGAIFIDSHGSLDACTAFLERIGLMNFLRRILQAEIDIMHPKQRLGEMVGQMQVRYETV 1368
Query: 254 DLWKESTAFH----IFIED 268
+ +E H +F++D
Sbjct: 1369 HVVEEDALGHWTCKVFVDD 1387
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 26/141 (18%)
Query: 78 FNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSA 137
F + NL+ A P E +Y+R+E++GDS+L + + P G L+ +
Sbjct: 965 FTDLNLVITALCAPDAREAT-NYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDE 1023
Query: 138 NVNTEKLARVAIKLGLHKYL------------RHNKPLLEEQIREFSEAILDYPLHSNGL 185
V+ ++L+ AI+ GL K++ +NK ++EQ D P
Sbjct: 1024 VVSNKRLSYAAIETGLDKFIFVDIFTGVKWRPLYNKAHVKEQ---------DIPRREM-- 1072
Query: 186 VDAPKVLADIVESTIGAVFID 206
+ K LAD++E+ +GA ID
Sbjct: 1073 --STKTLADVIEALLGAATID 1091
>gi|254442236|ref|ZP_05055712.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
gi|198256544|gb|EDY80852.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
Length = 263
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 34/241 (14%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPS----CPERFFSYERLEYVGDSVLNLLLTK 117
LP A E LGY F K LL ++ T PS ++ + +RLE++GDSV+ L+LT+
Sbjct: 31 LPQAKVKRLENKLGYTFKTKGLLHQSLTHPSFLLNTKDQLKNNQRLEFLGDSVIQLVLTE 90
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD 177
+ + +P+L G LT +RS + +A +A +L L YL IL
Sbjct: 91 KLYEKFPSLREGKLTSIRSGYARGDYMAGIARELKLGDYL-----------------ILK 133
Query: 178 YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---TH 234
+ G+ + L D E+ IGA+++D S + K+ EL + + T K +
Sbjct: 134 PKDRNAGVAENDSALGDAFEALIGAIYLD--SDFETSRKIILELYNYLDTAPTAKGVIAN 191
Query: 235 PVTELYEVCQ----KNKLKVKFVDLWKEST----AFHIFIEDQLLGRGAYAPKKEIAHNR 286
P +L E+ Q N L+ + + E+ +F D+ LG+GA KKE A
Sbjct: 192 PKGKLQELIQPVHGNNALRYETIAQTGEAHEREFEVAVFCHDEQLGKGAGRTKKEAAEKA 251
Query: 287 A 287
A
Sbjct: 252 A 252
>gi|410421196|ref|YP_006901645.1| ribonuclease III [Bordetella bronchiseptica MO149]
gi|408448491|emb|CCJ60174.1| ribonuclease III [Bordetella bronchiseptica MO149]
Length = 256
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L +RF +K LLE+A T S R ERLE++GDSVLN ++ F Y L G
Sbjct: 10 ETRLDHRFGDKALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYGKLDEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +L L +YLR L E +++ +G P
Sbjct: 68 LSRLRANLVKQASLADIAQRLDLSQYLR----LGEGELK-------------SGGFRRPS 110
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D + +V +P+++ P+TL T L E Q K
Sbjct: 111 ILADTVEALFGAVFLDAG--FEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRK 168
Query: 248 L 248
L
Sbjct: 169 L 169
>gi|33593415|ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I]
gi|33597819|ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822]
gi|33602721|ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50]
gi|384204710|ref|YP_005590449.1| ribonuclease III [Bordetella pertussis CS]
gi|408416453|ref|YP_006627160.1| ribonuclease III [Bordetella pertussis 18323]
gi|410473788|ref|YP_006897069.1| ribonuclease III [Bordetella parapertussis Bpp5]
gi|427815737|ref|ZP_18982801.1| ribonuclease III [Bordetella bronchiseptica 1289]
gi|427818292|ref|ZP_18985355.1| ribonuclease III [Bordetella bronchiseptica D445]
gi|427825850|ref|ZP_18992912.1| ribonuclease III [Bordetella bronchiseptica Bbr77]
gi|81424808|sp|Q7VW39.1|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|81426476|sp|Q7W5J6.1|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|81429935|sp|Q7WD32.1|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|33572771|emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I]
gi|33574248|emb|CAE38580.1| ribonuclease III [Bordetella parapertussis]
gi|33577163|emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50]
gi|332382824|gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS]
gi|401778623|emb|CCJ64063.1| ribonuclease III [Bordetella pertussis 18323]
gi|408443898|emb|CCJ50592.1| ribonuclease III [Bordetella parapertussis Bpp5]
gi|410566737|emb|CCN24306.1| ribonuclease III [Bordetella bronchiseptica 1289]
gi|410569292|emb|CCN17385.1| ribonuclease III [Bordetella bronchiseptica D445]
gi|410591115|emb|CCN06212.1| ribonuclease III [Bordetella bronchiseptica Bbr77]
Length = 256
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L +RF +K LLE+A T S R ERLE++GDSVLN ++ F Y L G
Sbjct: 10 ETRLDHRFGDKALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYGKLDEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +L L +YLR L E +++ +G P
Sbjct: 68 LSRLRANLVKQASLADIAQRLDLSQYLR----LGEGELK-------------SGGFRRPS 110
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D + +V +P+++ P+TL T L E Q K
Sbjct: 111 ILADTVEALFGAVFLDAG--FEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRK 168
Query: 248 L 248
L
Sbjct: 169 L 169
>gi|426200573|gb|EKV50497.1| hypothetical protein AGABI2DRAFT_64825 [Agaricus bisporus var.
bisporus H97]
Length = 1717
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 18/209 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+ +GY F N LL EA T PS SY+RLE++GDSV+ +L+T+ + +P
Sbjct: 1136 EKEIGYVFENPELLVEAVTHPSLEFSSTPSYQRLEFLGDSVIKMLVTEYLYHKFPKATSH 1195
Query: 130 SLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREF----SEAILDYPLHSNG 184
L R+ + + LA +AI KL +HKYL N L I + A D +
Sbjct: 1196 QLALPRTKAICSPALAHIAIRKLHIHKYLLQNSIDLNNAINLYVPVLESATADEIVRRGW 1255
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSID----IVWKVFKELLKPMISPETLKTHPVTELY 240
D PK ++D ES +GAVF+D +D IV ++ +++L+ +++P ++ PV+E+
Sbjct: 1256 RYDPPKAISDAFESVVGAVFVDVGYDLDRTGGIVCRLMEDILE-VLNP-SIPKDPVSEVL 1313
Query: 241 E-----VCQKN-KLKVKFVDLWKESTAFH 263
E C K LK K V +K H
Sbjct: 1314 EWLASVGCSKGHNLKFKCVKTFKLIICTH 1342
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+G F +LL EA T P+ + FS +RLE +GD+VL++ T F YP G L+
Sbjct: 957 IGLPFIPDDLLMEALTLPNV-DADFSNQRLETLGDAVLDICTTVHLMFKYPRRHEGQLST 1015
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNK------PLLEEQIREFSEAILDYPLHSNGLVD 187
LR+ V+ + L A + L +++ K P +E++ E E + + V
Sbjct: 1016 LRAGRVSNKFLVSCARTVELERFISSEKMGVEKWPFVEQKGYEVKE------IRNRKSVK 1069
Query: 188 ---APKVLADIVESTIGAVFI 205
+ L D VE+ +GA F+
Sbjct: 1070 RQIPRRGLQDCVEALLGASFL 1090
>gi|356980130|gb|AET43609.1| ribonuclease III [Micromonas pusilla virus PL1]
Length = 238
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 34/230 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC---PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E+++G + N +L ++AFT S E+F S+E LE++GDSVL ++TK F Y +
Sbjct: 9 EQLVGTKIKNLDLYQKAFTHKSALKEYEQFTESFETLEFIGDSVLGFVITKFLFDRYESR 68
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G LT+ R+ V E LA +A LGL Y+ I+D NG
Sbjct: 69 QEGFLTKARTKLVRGETLAHIAKHLGLQNYI-----------------IMDEKGMRNGWN 111
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKEL----LKPMISPETLKTHPVTELY 240
+ PK+L D E+ IGA+++D + + V ++F + L ++ + K H L
Sbjct: 112 NNPKILEDAFEALIGAIYMDIGLIHAKEFVLRIFTDPNIVDLNIIMIDDNFKDH----LM 167
Query: 241 EVCQKNKLKV---KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRA 287
+ CQ N +++ + V ++ I+I + + RG KK+ N A
Sbjct: 168 KYCQVNNMELPEYRVVGQYEGLFYIDIYIRNACVSRGIAKSKKQAEQNAA 217
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 34/242 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSY----ERLEYVGDSVLNLLLTKEQFFLYP 124
E++LGYRF +LLEEA T S R ERLE++GD+VL L++ + YP
Sbjct: 11 EDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVIAEYLMVTYP 70
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
P G L++ + V+ LA V+ LG+ +L K Q RE S
Sbjct: 71 KYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELTQGREKS------------ 118
Query: 185 LVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+LAD +E+ I A+++D +++ + F+ +++ + ++++ + T+L E
Sbjct: 119 -----SLLADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVQEDSIQDYK-TDLQEY 172
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
CQ+ + + + H + I ++ G G+ KKE A +AAKDAL+ +
Sbjct: 173 CQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKE-AEQKAAKDALSRL 231
Query: 296 ER 297
R
Sbjct: 232 AR 233
>gi|358058780|dbj|GAA95743.1| hypothetical protein E5Q_02400 [Mixia osmundae IAM 14324]
Length = 1610
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 34/196 (17%)
Query: 71 EEILGYRFNNKNLLEEAFT-----DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E+++GY F+N + L +A T P+ P SYER E++GD++L+ + +
Sbjct: 1240 EDLVGYSFSNNDCLIQALTHRSYLSPTTP----SYEREEFLGDAMLDFWAITRLYARFDG 1295
Query: 126 LPPGSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIR------------EFS 172
+ P L+RLR+ V L VA+ +L L +Y+ HN +Q+ EF
Sbjct: 1296 ITPQQLSRLRALLVCNGTLGYVAMLRLRLGEYVLHNADEFTDQLEIAQQQAEAMPPAEFC 1355
Query: 173 EAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPE 229
E + + D PKVL D VE+ GA+F+D ++V+K F +L P+ ISP
Sbjct: 1356 EQVWFW--------DPPKVLGDCVEAIAGAIFVDSGGDPELVFKYFDRILGPLMQYISP- 1406
Query: 230 TLKTHPVTELYEVCQK 245
+ PV+ L + Q+
Sbjct: 1407 NMPADPVSRLAHLKQE 1422
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
SYE +E +GDSVL +L + + YP G+LT LR+ +V L A++ L KYL
Sbjct: 1087 SYESIETLGDSVLKVLTSVHLYLAYPLKSEGALTCLRTNSVENVYLHHKAVESSLGKYLI 1146
Query: 159 HNKPLLEEQIREFSEAILDYPLHSNGLVDAP--------KVLADIVESTIGAVFIDCNSS 210
H + L + +E HS + D + L+D +ES +GA ++ S
Sbjct: 1147 HERMRLNTWLPRDAE-------HSADMGDGCEFERKIQRRALSDCIESILGAAYLTGGLS 1199
Query: 211 I 211
+
Sbjct: 1200 M 1200
>gi|376336574|gb|AFB32892.1| hypothetical protein 0_6448_02, partial [Pinus cembra]
gi|376336576|gb|AFB32893.1| hypothetical protein 0_6448_02, partial [Pinus cembra]
Length = 150
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Query: 181 HSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
+S GL D APKVL DIVES GA+F+D VW+VF+ LL+PM++PETL HPV E
Sbjct: 1 NSFGLGDFKAPKVLGDIVESIAGAIFLDKVLDTTKVWEVFQPLLQPMVTPETLPMHPVRE 60
Query: 239 LYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
L E CQ+ +++ + A +F++ +G A P+K++A AA++AL
Sbjct: 61 LQERCQQQAEGLEYKASRTGNMATVEVFVDGVQIGF-AQNPQKKMAQKLAARNAL 114
>gi|163955118|ref|YP_001648222.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5]
gi|163638567|gb|ABY27926.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5]
Length = 241
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 27/242 (11%)
Query: 64 NANNLDEEEILGYRFNNKNLLEEAFTDPSCPERF----FSYERLEYVGDSVLNLLLTKEQ 119
N N D E+++G + + + + AFT S + + S+E LE++GDSVL ++TK
Sbjct: 2 NFNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKFL 61
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F Y G LT+ R+ V +E LA +A+KLGL+K + ++D
Sbjct: 62 FDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLV-----------------LMDEK 104
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVT 237
NG + PK+L D+ E+ +GA+++D + V +++ + ++ + +
Sbjct: 105 GTRNGWNNNPKILEDVFEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKD 164
Query: 238 ELYEVCQKNKL---KVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
+L CQ N L + + V W+ + I + GRG KK+ A AAK N
Sbjct: 165 KLMRHCQVNNLPLPEYEVVSHWEGNFYVDALINGRFCGRGQAKSKKQ-AEQLAAKAFFNY 223
Query: 295 IE 296
I+
Sbjct: 224 IK 225
>gi|260665994|ref|YP_003212948.1| hypothetical protein H665_p125 [Ostreococcus tauri virus 1]
gi|260161012|emb|CAY39713.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1]
Length = 240
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 27/242 (11%)
Query: 64 NANNLDEEEILGYRFNNKNLLEEAFTDPSCPERF----FSYERLEYVGDSVLNLLLTKEQ 119
N N D E+++G + + + + AFT S + + S+E LE++GDSVL ++TK
Sbjct: 2 NFNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKFL 61
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F Y G LT+ R+ V +E LA +A+KLGL+K + ++D
Sbjct: 62 FDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLV-----------------LMDEK 104
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVT 237
NG + PK+L D+ E+ +GA+++D + V +++ + ++ + +
Sbjct: 105 GTRNGWNNNPKILEDVFEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKD 164
Query: 238 ELYEVCQKNKL---KVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
+L CQ N L + + V W+ + I + GRG KK+ A AAK N
Sbjct: 165 KLMRHCQVNNLPLPEYEVVSHWEGNFYVDALINGRFCGRGQAKSKKQ-AEQLAAKAFFNY 223
Query: 295 IE 296
I+
Sbjct: 224 IK 225
>gi|302335832|ref|YP_003801039.1| RNAse III [Olsenella uli DSM 7084]
gi|301319672|gb|ADK68159.1| RNAse III [Olsenella uli DSM 7084]
Length = 242
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 32/237 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E+I+G+ F+++ L+ A T PS E SYERLE++GDS+L ++ + F +P +
Sbjct: 11 EQIVGHHFSDQRLITSAITHPSAVEGKPVSASYERLEFLGDSILGAMVATDMFERFPGMD 70
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTRL+ + V+ + L+ VA LG+ + + + G
Sbjct: 71 EGELTRLKISLVSGKTLSEVAGSLGIGELI-----------------VFGESERGTGARG 113
Query: 188 APKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
L ++ E+ +GA+++D ++ D V + + P ++ L P + L EV Q+
Sbjct: 114 MHSALENVYEAIVGALYLDAGFEATHDFVRRTLSPHMVPELAARPLS--PKSRLQEVTQR 171
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
L E H + ++ + +GRG+ KKE + ++AA DAL+ +
Sbjct: 172 EFRCAPEYRLEGEEGPAHSPTFTTVVLVDGRRVGRGSGPSKKE-SESQAALDALDRL 227
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F N LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQL 226
>gi|361066575|gb|AEW07599.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|376336578|gb|AFB32894.1| hypothetical protein 0_6448_02, partial [Pinus mugo]
gi|376336580|gb|AFB32895.1| hypothetical protein 0_6448_02, partial [Pinus mugo]
gi|376336582|gb|AFB32896.1| hypothetical protein 0_6448_02, partial [Pinus mugo]
gi|383164825|gb|AFG65201.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164826|gb|AFG65202.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164827|gb|AFG65203.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164828|gb|AFG65204.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164830|gb|AFG65205.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164831|gb|AFG65206.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164832|gb|AFG65207.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164833|gb|AFG65208.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164834|gb|AFG65209.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164835|gb|AFG65210.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164836|gb|AFG65211.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164837|gb|AFG65212.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164838|gb|AFG65213.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164839|gb|AFG65214.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164840|gb|AFG65215.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164841|gb|AFG65216.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
Length = 150
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Query: 181 HSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
+S GL D APKVL DIVES GA+F+D VW+VF+ LL+PM++PETL HPV E
Sbjct: 1 NSFGLGDFKAPKVLGDIVESIAGAIFLDKVLDTAKVWEVFQPLLQPMVTPETLPMHPVRE 60
Query: 239 LYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
L E CQ+ +++ + A +F++ +G A P+K++A AA++AL
Sbjct: 61 LQERCQQQAEGLEYKASRTGNMATVEVFVDGVQIGF-AQNPQKKMAQKLAARNAL 114
>gi|395226011|ref|ZP_10404515.1| ribonuclease III [Thiovulum sp. ES]
gi|394445821|gb|EJF06693.1| ribonuclease III [Thiovulum sp. ES]
Length = 232
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 30/239 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+ILGY F + L+EEAFT S + F+ E+LE+VGDS+LN + + Y NL G
Sbjct: 10 EKILGYEFKDPTLIEEAFTHKSS-NKPFNNEKLEFVGDSILNFTMAMYLYRKYSNLNEGE 68
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR++ V+ + L ++A L + KYL L+ E + S I
Sbjct: 69 LSRLRASLVSKKGLLKIAENLRIGKYL-----LISEAEEKNSGRI------------KKS 111
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFK---ELLKPMISPETLKTHPVTELYEVCQKN- 246
+LAD VES I A+++D + +D+ + E + P +S +T+ T L E+ Q
Sbjct: 112 LLADSVESIIAAIYLD-SQDMDLTQQFITKQYEAVYPDMSLQTMFCDYKTVLQEITQAKY 170
Query: 247 ----KLKVKFVDLWKESTAFH--IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+ +V D F +FI D++ R A+ K+ A + AK + + E L
Sbjct: 171 GTIPEYRVLSTDGPDHEKIFEVGVFIADEMFSR-AFGKSKKDAEQQCAKKTIEDYEEAL 228
>gi|325108661|ref|YP_004269729.1| RNAse III [Planctomyces brasiliensis DSM 5305]
gi|324968929|gb|ADY59707.1| RNAse III [Planctomyces brasiliensis DSM 5305]
Length = 335
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 30/232 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+ LGY+F +KN L ++ T S + R S ER+E++GD+VL ++ F L+P G
Sbjct: 19 EQALGYQFQDKNWLLKSLTHASIAQTRLQSNERMEFLGDAVLGAVVCDRLFALFPEDEEG 78
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
+T+++S V+ A++A+ LGL ++++ K L Q RE PL
Sbjct: 79 QMTQMKSEVVSRTACAQLALALGLDRFVQMGKGL--HQSREI-------PL--------- 120
Query: 190 KVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
VLA + ES I A+++D ++ D + ++L++ ++ ++L ++ Q+ +
Sbjct: 121 SVLAGVFESVIAAIYLDGGYKAAFDFISGKLEDLIQHAAETAHIRNSK-SQLQQLTQRTR 179
Query: 248 LKVKFVDLWKESTAFH--IFIEDQLLGRGAYAP-----KKEIAHNRAAKDAL 292
+ +L +ES H F+ ++G Y P KKE A +AA +AL
Sbjct: 180 SQTPTYELLQESGPDHSKCFLVQAIVGPDTYPPAWGSNKKE-AEQKAALNAL 230
>gi|189425004|ref|YP_001952181.1| ribonuclease III [Geobacter lovleyi SZ]
gi|189421263|gb|ACD95661.1| Ribonuclease III [Geobacter lovleyi SZ]
Length = 228
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 35/224 (15%)
Query: 73 ILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
ILG+ F N+ LL++A T PS E Y+RLE++GD+VL LL +P LP
Sbjct: 8 ILGHSFINQRLLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALP 67
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G L+RLRS+ V+ +LAR+A+ G+ + K E R +N
Sbjct: 68 EGDLSRLRSSLVDQPRLARLAVDAGIPPLILMGKGAEREGGR------------TN---- 111
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPV-TELYEVC 243
P +LAD+ E+ +GA I C++ V +V K + P+ I+ T H +EL E+
Sbjct: 112 -PSILADVFEALLGA--IHCDAGFAAVQQVVKHIYAPLVNAIAAGTPAHHDAKSELQELL 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
K +L + H + ++ LG+G KK
Sbjct: 169 AARKQAAPVYNLVDQQGPDHDRLFCIEVSVDGMPLGQGQGRSKK 212
>gi|376336568|gb|AFB32889.1| hypothetical protein 0_6448_02, partial [Larix decidua]
gi|376336570|gb|AFB32890.1| hypothetical protein 0_6448_02, partial [Larix decidua]
gi|376336572|gb|AFB32891.1| hypothetical protein 0_6448_02, partial [Larix decidua]
Length = 150
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Query: 181 HSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
+S GL D APKVL DIVES GA+F+D VW+VF+ LL+PM++PETL HPV E
Sbjct: 1 NSFGLGDFKAPKVLGDIVESIAGAIFLDKVLDTAKVWEVFQPLLQPMVTPETLPMHPVRE 60
Query: 239 LYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
L E CQ+ +++ + A +F++ +G A P+K++A AA++AL
Sbjct: 61 LQERCQQQAEGLEYKASRTGNMATVEVFVDGVQIGF-AQNPQKKMAQKLAARNAL 114
>gi|361066573|gb|AEW07598.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
Length = 150
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Query: 181 HSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
+S GL D APKVL DIVES GA+F+D VW+VF+ LL+PM++PETL HPV E
Sbjct: 1 NSFGLGDFKAPKVLGDIVESIAGAIFLDKVLDTAKVWEVFQPLLQPMVTPETLPMHPVRE 60
Query: 239 LYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
L E CQ+ +++ + A +F++ +G A P+K++A AA++AL
Sbjct: 61 LQERCQQQAEGLEYKASRTGNMATVEVFVDGVQIGF-AQNPQKKMAQKLAARNAL 114
>gi|408374675|ref|ZP_11172359.1| ribonuclease III [Alcanivorax hongdengensis A-11-3]
gi|407765483|gb|EKF73936.1| ribonuclease III [Alcanivorax hongdengensis A-11-3]
Length = 220
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 28/233 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F + LLE A T S RF + ERLE++GD+ L +++ F +P G LTR
Sbjct: 4 IGYTFADSGLLELALTHRSANRRF-NNERLEFLGDAQLGQIISTTLFNQFPEATEGQLTR 62
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R++ V + LA VA LGL +YL +L +G +LA
Sbjct: 63 MRASLVRGQTLALVARDLGLGEYL-----------------VLGGGELKSGGFRRESILA 105
Query: 194 DIVESTIGAVFIDCNSS--IDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL--- 248
D +E+ IGA+ +D + + V ++F++ L +I+P+T + T L E Q K
Sbjct: 106 DALEAVIGAMLLDGGEAPCREAVLRLFRDRL-AVITPQTAQKDAKTRLQEWLQARKFELP 164
Query: 249 --KVKFVDLWKESTAFHIFIEDQLLGR--GAYAPKKEIAHNRAAKDALNNIER 297
+V+ V F + Q + + A + A RAA+ AL+ +E+
Sbjct: 165 EYQVESVQGQAPKQTFEVSCAMQQVQQTFSAQGASRRKAEQRAAEQALDWLEQ 217
>gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407]
Length = 1246
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 34/195 (17%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY+F LL AFT PS P E SY+RLE++GD++L++ + F + N P
Sbjct: 950 LGYQFRFPRLLRSAFTHPSYPRIYENLPSYQRLEFLGDALLDMAIVDYLFHKFSNKDPQW 1009
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKY------------LRHNKPLLEEQIREFSEAI--- 175
LT + A V+ + LA +++ LG H++ L + + EE++R SEA+
Sbjct: 1010 LTEHKMAMVSNQFLAFLSVSLGFHRHILSFSGEMRKQILEYVTKVEEERVRAESEAVEAG 1069
Query: 176 -------LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSI-DIVWKVFKELLKPMIS 227
DY +H + PK LAD++E+ +GA+F+D V K F ++P
Sbjct: 1070 RPASEFARDYWVH---VTHPPKALADVLEAYVGALFVDSEYDYHGTVLKFFNTHVQPYFK 1126
Query: 228 PETL-----KTHPVT 237
+L HPVT
Sbjct: 1127 DMSLYDTFANKHPVT 1141
>gi|443922458|gb|ELU41905.1| dicer-like protein 1 [Rhizoctonia solani AG-1 IA]
Length = 1426
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 21/215 (9%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
SYERLE++GD+VL++L+ + F P S+T ++S+ V+ LA + I+ GLH+YL
Sbjct: 1156 SYERLEFLGDAVLDMLVVQSFFSDEEEWSPHSMTLIKSSMVSNRALAIICIESGLHQYLM 1215
Query: 159 HNKPLLEEQIREFSEAILDYP---------LHSNGLVDAPKVLADIVESTIGAVFIDCNS 209
H+ L + I F + + L + APK L D+VES +GA++I
Sbjct: 1216 HDINSLAQSIVTFIDEVQKCKQIARTDAQRLKYWSKLVAPKALGDVVESLLGAIYISSGF 1275
Query: 210 SIDIVWKVFKELLKPM----ISPETLKTHPVTELYE-----VCQKNKLKVKFVDLWKEST 260
SI V V+ +LKP I + + THP++ L + C+ + L T
Sbjct: 1276 SITRVKTVYDRVLKPFYDRYIDKKAMLTHPMSRLMKRLESIGCRSFGVAKAETQLPNGGT 1335
Query: 261 AF--HIFIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
F + I Q++ + A + K + A A + ALN
Sbjct: 1336 GFKCEVKIHGQIIAQAA-SEKAQQAIKDATERALN 1369
>gi|169350084|ref|ZP_02867022.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552]
gi|169293297|gb|EDS75430.1| ribonuclease III [Clostridium spiroforme DSM 1552]
Length = 226
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 33/233 (14%)
Query: 78 FNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+++ + ++AFT S + YERLE++GD+VL +++ F LYP +P G LT+
Sbjct: 14 YHDIEIFKQAFTHTSYANENKLKNHDYERLEFLGDAVLQYHVSRYLFDLYPTMPEGRLTK 73
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LRS V E LAR A +L L Y+ L +NG D VLA
Sbjct: 74 LRSKLVREESLARFARELDLGTYI-----------------YLGAGEINNGGRDRDSVLA 116
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQKNKLKVK 251
DI E+ +GA+ DC ++ V + K+ + ++ T T+L E+ Q ++ K
Sbjct: 117 DIFEAFMGAICHDC--GMEYVDMMLKKTIYRHVNDVNYDDITDFKTKLQELIQADQRKTV 174
Query: 252 FVDLWKEST-------AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+L + + ++D +LG G + KK A +AAKDALN + +
Sbjct: 175 TYELLSATGPSNNPVFEMAVRMDDMILGTGIGSSKKR-AEQQAAKDALNKLAK 226
>gi|349603393|gb|AEP99241.1| Endoribonuclease Dicer-like protein, partial [Equus caballus]
Length = 223
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 32/221 (14%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
Y+RLE++GD++L+ L+TK + PG LT LRSA VN A +A+K HKY +
Sbjct: 2 YQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA 61
Query: 160 NKPLLEEQIREFSEAILDYPLHSNGL-------------------VDAPKVLADIVESTI 200
P L I +F + + L N + ++ PK + DI ES
Sbjct: 62 VSPELFHVIDDF----VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLA 117
Query: 201 GAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYEVCQKNKLKVKFVDLWKE 258
GA+++D S+++VW+V+ +++P+I + PV EL E+ + KF +
Sbjct: 118 GAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET---AKFSPAERT 174
Query: 259 STAFHIFIEDQLLGRGAY---APKKEIAHNRAAKDALNNIE 296
+ + +++G+G + IA + AA+ AL +++
Sbjct: 175 YDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK 214
>gi|365845433|ref|ZP_09386204.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|373118094|ref|ZP_09532230.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
gi|364560272|gb|EHM38214.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|371667658|gb|EHO32777.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
Length = 225
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 111/238 (46%), Gaps = 32/238 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
EE LGYRF N+ LE A T S + S ERLE++GDSVL +++ F +P+
Sbjct: 5 EEKLGYRFTNRAFLENALTHSSYANENKAKGLQSNERLEFLGDSVLGMVVADYLFRTHPD 64
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G LTR R+A V L VA L L YL+ K EE + G
Sbjct: 65 LPEGDLTRTRAALVCEGSLVEVAQCLELGAYLKLGKG--EE---------------AGGG 107
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ P ++AD VE+ + AV++D I K+ ++ + + ++ T L E+ Q+
Sbjct: 108 RERPSIIADAVEAVLAAVYLD--GGIGSARKLIQKFILDREAEKSASRDYKTALQELVQR 165
Query: 246 NKLKVKFVDLWKESTAFH--IF-IEDQL----LGRGAYAPKKEIAHNRAAKDALNNIE 296
+V L H IF +E L +G+G KKE N AAK A+ ++
Sbjct: 166 ESGQVLGYQLIGAEGPDHAKIFSVEVDLNGIPIGQGRGRSKKEAEQN-AAKAAIEKLK 222
>gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus]
Length = 243
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 39/244 (15%)
Query: 62 LPNANNLDE--EEILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLL 114
+ N NL++ EI+ YRF N ++L+EA T PS +R +YERLE++GDS+LN++
Sbjct: 6 ITNMQNLNDTISEIINYRFKNYSILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMV 65
Query: 115 LTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEA 174
++ F L+P G L + ++ V +A VA + L ++
Sbjct: 66 VSTILFKLFPKEKEGRLAKRKTDLVCGSTIANVAKVIKLGDFI----------------- 108
Query: 175 ILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLK 232
I+D NG K L + +E+ IGA++ID + V + +++L K M++P
Sbjct: 109 IMDNSERCNGGKYNLKNLENALEALIGAIYIDGGFRNVERFVTQYWEKLAKYMLNPP--- 165
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGR-GAYAPKKEIAH 284
P T L E QKNKL + +L K++ H ++I++ GR A A K++A
Sbjct: 166 QDPKTSLQEWTQKNKLPLPKYELKKQTGPAHNPEFTISVYIKN--YGRVSACASSKKVAE 223
Query: 285 NRAA 288
+AA
Sbjct: 224 QKAA 227
>gi|221361575|emb|CAX18336.1| dicel-like 1 [Nicotiana benthamiana]
Length = 79
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 49/66 (74%)
Query: 106 VGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLE 165
VGD+VL+ L+T+ FF Y +LPPG LT LR+A VN E ARVA+K GLH +LRH LE
Sbjct: 1 VGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHGLHLHLRHGSSALE 60
Query: 166 EQIREF 171
+QIR+F
Sbjct: 61 KQIRDF 66
>gi|353328388|ref|ZP_08970715.1| ribonuclease III [Wolbachia endosymbiont wVitB of Nasonia
vitripennis]
Length = 232
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 37/241 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+++ Y+F + +LEEA T PS +R SYERLE++GDS+LN++++ F ++P
Sbjct: 12 KVINYKFTDHAILEEALTHPSVNKRNSEDQIVSYERLEFLGDSILNMVVSAMLFKMFPEE 71
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L + ++ V +A VA ++ L ++ I++ NG
Sbjct: 72 KEGALAKRKTDLVCGSTIANVAKEIELGNFI-----------------IMNNSERCNGGK 114
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID S + + +++L K ++ P P T L E Q
Sbjct: 115 CNLKNLENSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDP---PQDPKTSLQEWTQ 171
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIEDQLLGR-GAYAPKKEIAHNRAAKDALNNIE 296
KNKL + +L K++ H IFIE+ G+ A A K+IA +AA+ L I+
Sbjct: 172 KNKLPLPEYELVKQTGPAHNPEFTISIFIEN--YGKVSACASSKKIAEQKAAELILEKIK 229
Query: 297 R 297
+
Sbjct: 230 K 230
>gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis]
gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis]
Length = 1720
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 98/218 (44%), Gaps = 48/218 (22%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY+F ++ L +A T PS P + Y+ LE++GD++L+ L++ F L P
Sbjct: 1444 EQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFENNTKLRP 1503
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI-------------------- 168
G LT LRSA VN L + ++ LH ++ LL E I
Sbjct: 1504 GELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRVTNHVRF 1563
Query: 169 ----REFSEAILDY----------------PLHSNGL---VDAPKVLADIVESTIGAVFI 205
R+ ILD P+ + L VD PK L D++E+ I AV++
Sbjct: 1564 LLEERDVQPVILDLDDEVEMAMENDSEDGPPIGAFNLAQNVDVPKALGDVLEALIAAVYM 1623
Query: 206 DCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYE 241
DC + W++ L +P + + + P+ +L+E
Sbjct: 1624 DCR-DLQTTWQMIYHLFEPELKEFSQNIPISPIRQLHE 1660
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F N LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINKL 226
>gi|409082707|gb|EKM83065.1| hypothetical protein AGABI1DRAFT_125544 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1430
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 12/181 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E+ +GY F N LL EA T PS SY+RLE++GDSV+ +L+T+ F +P
Sbjct: 1136 EKEIGYVFENPELLVEAVTHPSLEFSSTPSYQRLEFLGDSVIKMLVTEYLFHKFPKATSH 1195
Query: 130 SLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREF----SEAILDYPLHSNG 184
L R+ + + LA +AI K+ +HKYL N L I + A D +
Sbjct: 1196 QLALPRTKAICSPALAHIAIRKIHIHKYLLQNSIDLNNAINLYVPVLESATADEIVRRGW 1255
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSID----IVWKVFKELLKPMISPETLKTHPVTELY 240
D PK ++D ES +GAVF+D +D IV ++ +++L+ +++P ++ PV+E+
Sbjct: 1256 RYDPPKAISDAFESVVGAVFVDVGYDLDRTGGIVCRLMEDILE-VLNP-SIPKDPVSEVL 1313
Query: 241 E 241
E
Sbjct: 1314 E 1314
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+G F +LL EA T P+ + FS +RLE +GD+VL++ T F YP G L+
Sbjct: 957 IGLPFIPDDLLMEALTLPNV-DADFSNQRLETLGDAVLDICTTVHLMFKYPRRHEGQLST 1015
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNK------PLLEEQIREFSEAILDYPLHSNGLVD 187
LR+ V+ + L A + L +++ K P +E++ E E I D +
Sbjct: 1016 LRAGRVSNKFLVSCARTVELERFISSEKMGVEKWPFVEQKGYEAKE-IRDRKSVKRQI-- 1072
Query: 188 APKVLADIVESTIGAVFI 205
+ L D VE+ +GA F+
Sbjct: 1073 PRRGLQDCVEALLGASFL 1090
>gi|89094542|ref|ZP_01167480.1| ribonuclease III [Neptuniibacter caesariensis]
gi|89081141|gb|EAR60375.1| ribonuclease III [Oceanospirillum sp. MED92]
Length = 226
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 31/233 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+G+ F++ +L E A T SC ++ + ERLE++GDS+LN ++ + + +P G L+R
Sbjct: 12 IGHDFSDLSLFELALTHRSCGKK--NNERLEFLGDSILNFVIADDLYARFPKAKEGELSR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V L+ VA +LGL YLR L+ +G +LA
Sbjct: 70 LRARMVKGVTLSEVARELGLGDYLRLGSGELK-----------------SGGFRRDSILA 112
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV- 250
D VE+ IGA+++D +++ + K F++ L + E+LK T L E Q +L +
Sbjct: 113 DAVEAIIGAIYLDSDMDTARAYILKWFEQRLSTLDLNESLKDSK-TRLQEFLQSRRLALP 171
Query: 251 --KFVDLWKESTAFHIFIEDQLLG-----RGAYAPKKEIAHNRAAKDALNNIE 296
+ ++ E+ A +I+ ++ G +G + +++ A AAK+AL ++
Sbjct: 172 EYELTNVEGEAHAQTFYIDCRVSGLNNPAKGTGSSRRQ-AEQEAAKNALTALQ 223
>gi|365853510|ref|ZP_09393777.1| ribonuclease III [Lactobacillus parafarraginis F0439]
gi|363712135|gb|EHL95834.1| ribonuclease III [Lactobacillus parafarraginis F0439]
Length = 229
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 36/234 (15%)
Query: 79 NNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
++++LL+EAFT S + YERLE++GD+VL L++++ F YP LP G LTR
Sbjct: 11 DDQDLLDEAFTQASYVNEHRDQNLKFYERLEFLGDAVLQLIVSEYIFTRYPKLPQGRLTR 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+A VN + + A + +KY+R K EE+ G D +L
Sbjct: 71 LRAAMVNEQSFSTFARECHFNKYIRLGKG--EEKA---------------GARDRDSLLC 113
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKN---K 247
DI ES +GA+++D +V ++++ P + H TEL E+ Q++
Sbjct: 114 DIFESFVGALYLDQGKK--VVEGFVQQVIFPKLDEGMFAEFFDHK-TELQELAQEDGPVD 170
Query: 248 LKVKFVDLWKEST----AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ + VD + ++ I+ ++LG G KK+ A +AA+ AL + ++
Sbjct: 171 IDYELVDEYGPENDRLFKVNVAIDHKVLGIGVGHSKKD-AEQKAAQQALKHFDK 223
>gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13]
gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13]
Length = 228
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 25/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E++L Y+F + NLL+++ T S + ERLE++GDS+LN + + F +PN+P G
Sbjct: 10 EDLLQYKFKDINLLQKSLTHRSFDGE--NNERLEFLGDSILNFTIAEALFIKFPNIPEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR++ V + LA +A+K+ L ++ L E L S G P
Sbjct: 68 LSRLRASLVKSGTLAEIAVKIKLGDFI-----FLGEG-----------ELKSAGW-RRPS 110
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LAD E+ IGA+++D + + + F++ L I+P + P T L E+ Q KL
Sbjct: 111 ILADTFEAIIGALYLDGGLRPAQTFIHQYFQDWLSE-INPAKVDKDPKTSLQELLQSKKL 169
Query: 249 ---KVKFVDLWKESTA 261
K + D+ E+ A
Sbjct: 170 MLPKYEVADIKGEAHA 185
>gi|395330301|gb|EJF62685.1| hypothetical protein DICSQDRAFT_104190 [Dichomitus squalens LYAD-421
SS1]
Length = 1453
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 22/239 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E LGY F + +LL EA T PS C SY+RLE++GD+ +++++T+ + +P+
Sbjct: 1121 QETLGYTFKHGHLLLEAITHPSFRSTDCS----SYQRLEFLGDAFIDMVVTEYLYRKFPS 1176
Query: 126 LPPGSLTRLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEEQIREF---SEAILDYPLH 181
G L+ RS V A +A+K L LHK L N L I + E I D +
Sbjct: 1177 ATSGQLSWARSRAVCGPAFASIAVKRLALHKLLLINNVELSMAISKHVPILEEITDEEII 1236
Query: 182 SNGLV-DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP--ETLKTHPVTE 238
NG D PK L+D++ES +GA+F+DC+ + D + + +L+ +++ L PVTE
Sbjct: 1237 INGWKHDPPKALSDVLESVLGALFVDCDYNYDKAAAITEMVLEDLLAALRPDLPKDPVTE 1296
Query: 239 LYE-VCQKNKLKVKFVDLW-----KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
L V Q + F+ + + + D ++ AP +A AA+ A
Sbjct: 1297 LMVWVAQSGCRCISFLKGQSRPEVRRYDCMSVLVHDTIVAGPLAAPNLSMAKGLAAERA 1355
>gi|393246311|gb|EJD53820.1| ribonuclease III [Auricularia delicata TFB-10046 SS5]
Length = 1227
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 125/246 (50%), Gaps = 31/246 (12%)
Query: 44 LQDLFVNEKAGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERF-FSYE 101
LQD +V+ KA S +L+ E +LG +L+ +A T SY+
Sbjct: 896 LQD-YVDVKANIPGRSHVQLRCESLEHVERLLGRPIQRPHLVAQALTHSVIDSSLATSYQ 954
Query: 102 RLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNK 161
RLE++GD++L+LL+ + + Y L P +LT L++A V+ LA V ++ GLHK++ H
Sbjct: 955 RLEFLGDAILDLLVVR-YIWRYEKLDPEALTLLKAAMVSNSTLAAVCVQCGLHKHIIHAS 1013
Query: 162 PLLEEQI--------------REFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDC 207
P L +I R +++ + P+ ++ PK L+D++ES +GA+FI
Sbjct: 1014 PSLGVKIDNYVKALHSARDKERALAQSEVRQPVQYWLELEHPKPLSDLIESLLGALFISE 1073
Query: 208 NSSIDIVWKVFKELLKPM----ISPETLKTHPVTELYEV-----CQKNKLKVKFVDLWKE 258
N +I + F+ +L+ I + +HP T L+++ CQ+ +++ ++
Sbjct: 1074 NYAIAPLEAFFENVLRLFYDEHIRLSSCSSHPTTTLFKMLESRSCQRFEME----KTTQK 1129
Query: 259 STAFHI 264
+ A+HI
Sbjct: 1130 AAAYHI 1135
>gi|30250251|ref|NP_842321.1| ribonuclease III [Nitrosomonas europaea ATCC 19718]
gi|81436192|sp|Q820I0.1|RNC_NITEU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|30181046|emb|CAD86236.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea
ATCC 19718]
Length = 245
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 24/180 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F +LL EA T S F + ER E++GDSVLN ++ F +P+LP G LTR
Sbjct: 31 LGYTFKQPDLLREALTHRSLG--FPNNERFEFLGDSVLNCAVSTLLFKRFPSLPEGDLTR 88
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ VN + L R+A LG+ + + LL E R+ +G P +LA
Sbjct: 89 LRANFVNQQALHRLASALGIGELI-----LLGEGERK------------SGGHHRPSILA 131
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI---SPETLKTHPVTELYEVCQKNKLKV 250
+ VE+ IGA++++ S +V +V L +P+I P+T T L E Q K+ +
Sbjct: 132 NAVEAIIGAIYLE--SGFAVVEQVIVALYEPLIRQLDPDTSGKDSKTLLQEYLQSRKIAL 189
>gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis]
gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis]
Length = 1348
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 99/229 (43%), Gaps = 60/229 (26%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNL 126
D E LGY F +++ L +A T S + Y+RLE++GD+V++ L+T+ + L
Sbjct: 1068 DVERALGYTFVDRSFLLQAVTHASYYRNRLTDCYQRLEFLGDAVIDYLVTRYLYELPRKF 1127
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLL---------------------- 164
PG LT LRS+ VN A + +K GLH +H P L
Sbjct: 1128 NPGQLTDLRSSLVNNTFFASLVVKYGLHGCFKHCNPSLFSAIGRFVNYQAQAREEEREEG 1187
Query: 165 ------EEQIREFSEAILDYPLHSNGLVD------------------------APKVLAD 194
E+ +EF + L+ PL +G D PK L D
Sbjct: 1188 ELPDEDREERQEFPD--LNAPL--DGAEDDTYWKVLERHYCHEEECQEPEEVEVPKALGD 1243
Query: 195 IVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYE 241
+ ES +GAVF+DC S+D VW++ + I + + PV EL E
Sbjct: 1244 LFESLMGAVFLDCGMSLDRVWRIIYRMFGQEIESFSQNVPVPPVKELTE 1292
>gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
Length = 227
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 29/236 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+F ++ L+ EA T S + F + ERLEY+GD+VL+L++ + + L+P G L++
Sbjct: 10 LGYQFKDEKLITEALTHRSYSKEF-NNERLEYLGDAVLDLIVGEYLYNLFPKAEEGILSK 68
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+A VN E ++A +L L KYL L +N + P +L+
Sbjct: 69 LRAALVNEESFDKLAKRLNLGKYL-----------------FLSPAEENNKGREKPSILS 111
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVK 251
E+ IGA++++ + + +I K+ KE P I+PE L T L E+ Q + V
Sbjct: 112 SAFEALIGALYLEAGFDKAKEIALKLLKEEY-PKITPEELLKDYKTTLQEITQAHFGVVP 170
Query: 252 FVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN 300
L + H +FI D+ R A K+ A A+ + +++ LN
Sbjct: 171 EYRLLSATGPDHKKEFEIGVFINDREYAR-AKGRSKKAAQQEGARLTIEKLKKELN 225
>gi|402496724|ref|YP_006555984.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649997|emb|CCF78167.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 235
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 37/232 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
EI+ YRF N ++L+EA T PS +R +YERLE++GDS+LN++++ F L+P
Sbjct: 10 EIINYRFKNYSILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMVVSTILFKLFPKE 69
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G L + ++ V +A VA + L ++ I+D NG
Sbjct: 70 KEGRLAKRKTDLVCGSTIANVAKVIKLGDFI-----------------IMDNSEQCNGGK 112
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID + V + +++L K M++P P T L E Q
Sbjct: 113 YNLKNLENALEALIGAIYIDGGFRNVERFVTQYWEKLAKYMLNPP---QDPKTSLQEWTQ 169
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIEDQLLGR-GAYAPKKEIAHNRAA 288
KNKL + +L K++ H ++I++ GR A A K++A +AA
Sbjct: 170 KNKLPLPKYELKKQTGPAHNPEFTISVYIKNH--GRVSACASSKKVAEQKAA 219
>gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae]
gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae]
Length = 1727
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 101/229 (44%), Gaps = 56/229 (24%)
Query: 66 NNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLY 123
N+ + E+ LGY F ++ L +A T PS P + Y++LE++GD++L+ L++ F
Sbjct: 1442 NHANLEQNLGYTFKDRGYLLQALTHPSYPTNRITGCYQQLEFIGDAILDFLISGYIFENN 1501
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE---------- 173
+ PG LT LRSA VN LA + ++ +H ++ LL E I F +
Sbjct: 1502 TKMTPGQLTDLRSALVNNTTLACICVRHKIHLFILAENALLSEAIASFVQFQETQNHRVT 1561
Query: 174 ---AIL------------------------------------DYPLHSNGLVDAPKVLAD 194
IL DY + N VD PK L D
Sbjct: 1562 NHVRILLEENDTTPLDVDGEVKSMEIDETTESEENNGVPTKGDYNMSQN--VDVPKALGD 1619
Query: 195 IVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPVTELYE 241
++E+ I AV++DC + W+V L KP I T + +P+ +L E
Sbjct: 1620 VLEALIAAVYLDCR-DLHRTWQVIYNLFKPEIKEFTRNVPINPIRQLNE 1667
>gi|407695372|ref|YP_006820160.1| ribonuclease 3 [Alcanivorax dieselolei B5]
gi|407252710|gb|AFT69817.1| Ribonuclease 3 [Alcanivorax dieselolei B5]
Length = 228
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 28/236 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+ LGYRF++ LE A T S R + ERLE++GD+ L+ +++ E F + + G
Sbjct: 9 EKALGYRFSDGERLELALTHRSVSRRH-NNERLEFLGDAQLSQIISTELFHRFTDAAEGQ 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LTR+R++ V + LA VA +LGL +YL IL +G
Sbjct: 68 LTRMRASLVRGQTLAEVARELGLGEYL-----------------ILGGGELKSGGHRRDS 110
Query: 191 VLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LAD +E+ IGA+ ID ++ ++V F+ L ISP++++ T L E Q K
Sbjct: 111 ILADTLEALIGAMVIDGGEDACREVVLSWFEARL-AAISPQSVRKDAKTRLQEWLQARKY 169
Query: 249 KVKFVDLWKEST-----AFHIFIEDQLLGRG--AYAPKKEIAHNRAAKDALNNIER 297
++ + S +F + E L + A P + A +AA+ AL +E+
Sbjct: 170 ELPVYGVLSISGQAPKQSFEVECELSGLKKTFRASGPSRRRAEQQAAEQALEWLEQ 225
>gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
Length = 1720
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 98/218 (44%), Gaps = 48/218 (22%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY+F ++ L +A T PS P + Y+ LE++GD++L+ L++ F L P
Sbjct: 1444 EQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFENNNKLRP 1503
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI-------------------- 168
G LT LRSA VN L + ++ LH ++ LL E I
Sbjct: 1504 GELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRVTNHVRF 1563
Query: 169 ----REFSEAILDY----------------PLHSNGL---VDAPKVLADIVESTIGAVFI 205
R+ ILD P+ + L VD PK L D++E+ I AV++
Sbjct: 1564 LLEERDVQPVILDLDEEVEMAMENDSGDGPPIGAFNLAQNVDVPKALGDVLEALIAAVYM 1623
Query: 206 DCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYE 241
DC + W++ L +P + + + P+ +L+E
Sbjct: 1624 DCR-DLQTTWQMIYHLFEPELKEFSQNIPISPIRQLHE 1660
>gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
[Ailuropoda melanoleuca]
Length = 1931
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 42/260 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 129 GSLTRLRSANVNTEKLARVAIKL--------GLHKYLRHNKPLLEEQIREFSEAILDYPL 180
G LT LRSA VN A +A+ HKY + P L I +F + + L
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVXXXXXXXXXXDYHKYFKAVSPELFHVIDDF----VQFQL 1786
Query: 181 HSNGL-------------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKEL 221
N + ++ PK + DI ES GA+++D S+++VW+V+ +
Sbjct: 1787 EKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPM 1846
Query: 222 LKPMIS--PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY--- 276
++P+I + PV EL E+ KF + + + +++G+G +
Sbjct: 1847 MRPLIEKFSANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGV 1902
Query: 277 APKKEIAHNRAAKDALNNIE 296
IA + AA+ AL +++
Sbjct: 1903 GRSYRIAKSAAARRALRSLK 1922
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>gi|410727093|ref|ZP_11365316.1| ribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410599428|gb|EKQ53981.1| ribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 270
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 115/240 (47%), Gaps = 31/240 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LG FNN LL+ A T S +F E RLE++GDSVL L +T+ F Y +
Sbjct: 48 EENLGVYFNNPTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEHLFNNYKHKS 107
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT++RS V L +A K+ L Y+R +K E++ E I
Sbjct: 108 EGELTKIRSLIVCENSLYEIARKINLGSYIRMSKG---EELTGGRERI------------ 152
Query: 188 APKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ AD VE+ I AV++D D + F+E++K I+ E + T+L E+ QK
Sbjct: 153 --SIQADAVEAVIAAVYLDKGIGFVRDFILLHFEEVIKKAINNEIVLDFK-TKLQELLQK 209
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+ +L K H + I+ +L+G G+ KKE N AAK AL+ +E +
Sbjct: 210 DGEVAIQYELIKYEGPPHRRKFYTNVIIDKKLMGEGSGYSKKEAEQN-AAKQALDMLEGI 268
>gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13]
gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239]
gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422346389|ref|ZP_16427303.1| ribonuclease 3 [Clostridium perfringens WAL-14572]
gi|422874639|ref|ZP_16921124.1| ribonuclease III [Clostridium perfringens F262]
gi|22654058|sp|Q8XJN8.1|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13]
gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239]
gi|373225934|gb|EHP48261.1| ribonuclease 3 [Clostridium perfringens WAL-14572]
gi|380304280|gb|EIA16569.1| ribonuclease III [Clostridium perfringens F262]
Length = 237
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 31/253 (12%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERF--FSY-ERLEYVGDSVLNLLLTKE 118
+ + N ++ E+++G F NK +L A T S +F Y ERLE++GDSVL L +TK
Sbjct: 1 MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY 178
F Y + G LT++R+ V L +V+ L L KY+R +K E++
Sbjct: 61 LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKG---EEL---------- 107
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPV 236
G + + AD +E+ I AV++D + D + + FK+++ I+ E +
Sbjct: 108 ----TGGRERTSIQADALEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFK- 162
Query: 237 TELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAK 289
T L EV QKN +L K H + I ++++G+G KKE N AAK
Sbjct: 163 TRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQN-AAK 221
Query: 290 DALNNIERLLNEK 302
AL + + EK
Sbjct: 222 AALQRLGEIKWEK 234
>gi|302826423|ref|XP_002994689.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii]
gi|300137140|gb|EFJ04244.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii]
Length = 243
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
Query: 168 IREFSEAI---LDYP-LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKEL 221
I++F + I LD P ++S G+ D APKVL DI+ES GA+F+D + D VWKVF+ L
Sbjct: 1 IKDFVKDIQSELDKPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERL 60
Query: 222 LKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKK 280
L+PM++P+TL HPV EL E CQ+ +++ + S A +F++ +G KK
Sbjct: 61 LEPMVTPDTLPVHPVRELQERCQQQAEGLEYRASREGSIATVEVFVDGVQIGCAQNTQKK 120
>gi|376336566|gb|AFB32888.1| hypothetical protein 0_6448_02, partial [Abies alba]
Length = 150
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Query: 181 HSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
+S GL D APKVL DIVES GA+F+D VW+VF+ LL+PM++PETL HPV E
Sbjct: 1 NSFGLGDFKAPKVLGDIVESIAGAIFLDKVLDTTKVWEVFQPLLQPMVTPETLPMHPVRE 60
Query: 239 LYEVCQKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
L E CQ+ +++ + A ++++ +G A P+K++A AA++AL
Sbjct: 61 LQERCQQQAEGLEYKASRTGNMATVEVYVDGVQIGF-AQNPQKKMAQKLAARNAL 114
>gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 1510
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 99/195 (50%), Gaps = 29/195 (14%)
Query: 78 FNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
F + LL AF PS P +F S Y+RLE++GD++L+++ F +P+ P LT
Sbjct: 1230 FKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKFPDADPQWLTEH 1289
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL------------------ 176
+ A V+ L ++++LG ++ + H ++ QI+++ +A+
Sbjct: 1290 KMAMVSNHFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEAAAQISGVISQ 1349
Query: 177 DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL----- 231
DY L+ + PK L+D+VE+ IGA+F+D + V F++ ++P + L
Sbjct: 1350 DYWLN---VQHPPKFLSDVVEAYIGAIFVDSGYNYSQVQAFFEKHIRPFFADMALYDSFA 1406
Query: 232 KTHPVTELYEVCQKN 246
+ PVT L + Q++
Sbjct: 1407 SSQPVTTLARMMQQD 1421
>gi|366053080|ref|ZP_09450802.1| ribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 233
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 36/235 (15%)
Query: 78 FNNKNLLEEAFTDPSC----PERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
FNN LL+EAFT S P + YER+E++GD+VL L +++ + YP +P G LT
Sbjct: 17 FNNHELLDEAFTQASYVNEHPNQGLKFYERIEFLGDAVLQLTVSEYIYQRYPKMPQGELT 76
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
RLR+A V + ++ A++ KY+R L + G +L
Sbjct: 77 RLRAAMVQEDSFSKFALECHFDKYIR-----------------LGHGEEMAGARQRSSLL 119
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKN-KL 248
DI ES IGA+++D V K +++ P + H V T L E Q+N +
Sbjct: 120 CDIFESFIGALYLDQGKK--AVEKFITKVIFPKLDQGWF-DHAVDYKTSLQEFLQRNGDV 176
Query: 249 KVKFVDLWKESTA------FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ + +E A +++ ++Q +G G KK A AAK ALN++ +
Sbjct: 177 DIDYKVAKEEGPANARQYTVNVYADNQKIGSGTGTSKKH-AEMEAAKAALNDLRK 230
>gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 222
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 24/231 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+ +LG F NK+LL EA T PS E+ SYERLE++GD+VLNL++ + L+P P G
Sbjct: 7 QSLLGVYFKNKDLLVEALTHPSV-EKCPSYERLEFLGDAVLNLVIASMLYDLFPGDPEGR 65
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+ +SA + LA +A ++ L Y+R L + G D
Sbjct: 66 LSHRQSALICKNTLAMLARQMNLGDYIR-----------------LSSSEEAGGGRDKTS 108
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
L +++E+ +GA+F+D + + K + ++++ +P + L E+ Q +K
Sbjct: 109 NLENVLEALVGAIFLDAGLET-VTCFIKKRWYGLAVQSDSIEPNPKSTLQELLQAKGMKP 167
Query: 251 KFVDLWKESTAFH--IF-IEDQLLG--RGAYAPKKEIAHNRAAKDALNNIE 296
++ S H IF IE ++ G R A K++ AA+ L ++
Sbjct: 168 PIYNVINRSGPAHLPIFEIEIRVDGKKRRATGKSKKLGEENAARMMLEELK 218
>gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 237
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 31/253 (12%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERF--FSY-ERLEYVGDSVLNLLLTKE 118
+ + N ++ E+++G F NK +L A T S +F Y ERLE++GDSVL L +TK
Sbjct: 1 MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY 178
F Y + G LT++R+ V L +V+ L L KY+R +K E++
Sbjct: 61 LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKG---EEL---------- 107
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPV 236
G + + AD +E+ I AV++D + D + + FK+++ I+ E +
Sbjct: 108 ----TGGRERTSIQADALEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFK- 162
Query: 237 TELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAK 289
T L EV QKN +L K H + I ++++G+G KKE N AAK
Sbjct: 163 TRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQN-AAK 221
Query: 290 DALNNIERLLNEK 302
AL + + EK
Sbjct: 222 AALQRLGEIKWEK 234
>gi|347534362|ref|YP_004841032.1| ribonuclease 3 [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504418|gb|AEN99100.1| Ribonuclease 3 [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 247
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 34/233 (14%)
Query: 77 RFNNKNLLEEAFTDPSC----PERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
+FNN+ LL+EAFT S P++ YERLE++GD+V L+++ F YP +P G L
Sbjct: 27 KFNNEELLDEAFTQASYVNEHPDQDLKFYERLEFLGDAVYQLVVSDYIFKRYPEMPQGRL 86
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
TRLR+A VN +R A + KY+R K EE+ G +
Sbjct: 87 TRLRAAMVNRLSFSRFARECHFDKYIRLGKG--EEKA---------------GARKRDSL 129
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQKN--- 246
L DI ES IGAV++D I+ V ++ P + TEL E Q N
Sbjct: 130 LCDIFESFIGAVYLD--QGIETVKHFCNLVIFPKLDEGWFNEFFDHKTELQEAVQINGPV 187
Query: 247 KLKVKFVDL----WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
K++ K +D +F++DQ LG G KK A A+K AL+ +
Sbjct: 188 KIEYKLLDENGPDNDRQFKVAVFVDDQELGVGEGHSKKN-AEQLASKMALDKL 239
>gi|336450626|ref|ZP_08621073.1| ribonuclease III [Idiomarina sp. A28L]
gi|336282449|gb|EGN75681.1| ribonuclease III [Idiomarina sp. A28L]
Length = 235
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 24/183 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E LGY FNN LL +A T S E YERLE++GDS+L++++ + + +P P G
Sbjct: 12 ERRLGYNFNNHALLYQALTHRSAGEGH--YERLEFLGDSILSVVIAEALYHRFPKSPEGD 69
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+R+R+ V + LA+VA + L K+L L+ +G
Sbjct: 70 LSRMRATLVCGDMLAKVAREFELGKFLNLGPGELK-----------------SGGFRRDS 112
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNK 247
+L+D VE+ IGA+F+D N I+ V ++ + +P+ I P + T L E Q +
Sbjct: 113 ILSDAVEAIIGAIFLDSN--IEKVQEIVRTWYQPLLAEIRPGNSQKDSKTRLQEYLQSRQ 170
Query: 248 LKV 250
V
Sbjct: 171 FAV 173
>gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124]
gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124]
Length = 241
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 31/253 (12%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERF--FSY-ERLEYVGDSVLNLLLTKE 118
+ + N ++ E+++G F NK +L A T S +F Y ERLE++GDSVL L +TK
Sbjct: 5 VKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 64
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY 178
F Y + G LT++R+ V L +V+ L L KY+R +K E++
Sbjct: 65 LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKG---EEL---------- 111
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPV 236
G + + AD +E+ I AV++D + D + + FK+++ I+ E +
Sbjct: 112 ----TGGRERTSIQADALEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFK- 166
Query: 237 TELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAK 289
T L EV QKN +L K H + I ++++G+G KKE N AAK
Sbjct: 167 TRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQN-AAK 225
Query: 290 DALNNIERLLNEK 302
AL + + EK
Sbjct: 226 AALQRLGEIKWEK 238
>gi|406838055|ref|ZP_11097649.1| ribonuclease III [Lactobacillus vini DSM 20605]
Length = 235
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 28/184 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E G F LL+EAFT S E YER+E++GD+V+ L +++ F +PN
Sbjct: 10 KEQFGIDFKKTELLDEAFTHASYVNEHPKENLKYYERIEFLGDAVMQLCVSEYLFIRFPN 69
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G L+RLR+A V + ++ A++ KY+R K + + R+
Sbjct: 70 LPEGKLSRLRAAMVCEDSFSKFAVECSFDKYIRLGKGEEKAKARQ--------------- 114
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP---ETLKTHPVTELYEV 242
P +L DI ES IGA+++D + +V + ++++ P I + L H TEL E
Sbjct: 115 --RPSLLCDIFESFIGALYLDQGKT--VVDQFIRQVVFPKIDLGWFDHLLDHK-TELQEY 169
Query: 243 CQKN 246
Q+N
Sbjct: 170 LQRN 173
>gi|395330621|gb|EJF63004.1| hypothetical protein DICSQDRAFT_83832 [Dichomitus squalens LYAD-421
SS1]
Length = 1330
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 41/213 (19%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E++ +FN +LL +A T S SY+RLE++GD++L+ L+++ + +P L P
Sbjct: 1020 EKLFNSKFNRLDLLGQALTHTSAFSGAEGTSYDRLEFIGDAILDFLVSRYIWERHPYLSP 1079
Query: 129 GSLTRLRS--ANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--------------- 171
G LT L++ A V+ + LA + +GL +YLR L I+++
Sbjct: 1080 GGLTMLKANGAMVSNQTLAAFCVHVGLQQYLRMESKDLSTAIQKYIDFLEELRKKEYDFA 1139
Query: 172 -------SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP 224
+ LD P+ + PK L+D+VES IGA+++ N V + F+ + KP
Sbjct: 1140 SREQRLPGQYWLDMPM------EPPKCLSDVVESLIGALYVSDNFFEVGVGRFFETVFKP 1193
Query: 225 MISP----ETLKTHPVTELYEV-----CQKNKL 248
+ +TL T+P L E+ CQ N +
Sbjct: 1194 FLEAHVRLQTLSTNPKITLLELLQAEGCQNNAV 1226
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 78 FNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLR 135
F+N + ++ S P + F+YERLE++GDS L ++ + + P++ G L + R
Sbjct: 803 FHNAVIEQQLLIALSTPAAWTEFNYERLEFLGDSFLKVVASNFCYATMPSVHVGDLHQAR 862
Query: 136 SANVNTEKLARVAIKLGLHKYLRHNK 161
+ ++ + L A ++G+ Y++H +
Sbjct: 863 QSIISNKVLQEGATRVGVPSYVQHKR 888
>gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
Length = 1443
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 22/174 (12%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
YRF LL AF PS P E SY+RLE++GDS+L++ F+ YP+ P LT
Sbjct: 1171 YRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDKDPQWLT 1230
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
++ V+ + L V I+ +++ +EE RE + A+ DY + + + PK L
Sbjct: 1231 EHKTPMVSNKFLGAVQIRDYVYE--------VEEAEREANGAV-DYWV---SVSEPPKCL 1278
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-------KTHPVTEL 239
AD++E+ + A+F+D ++V K F LKP TL HP T L
Sbjct: 1279 ADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTRL 1332
>gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis
JAM81]
Length = 1492
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 18/169 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNL-- 126
E +L Y F +K++L EA T S +Y+RLE++GD+VL+ ++TK +LY L
Sbjct: 1224 EAVLNYTFQDKSILWEALTHSSSSFSICGLNYQRLEFLGDAVLSFIITK---YLYTQLGS 1280
Query: 127 -PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY---PLHS 182
PG ++ L+S V + LA V+I+LGL +LR K + +++ ++++ P S
Sbjct: 1281 SSPGVISHLKSEMVCNQFLACVSIRLGLIDWLRVKKSDTVWIVDAYAQQVIEHLSQPADS 1340
Query: 183 ------NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWK-VFKELLKP 224
+ APK+ D+ E+ +GA+F+D SI+ V + V L+KP
Sbjct: 1341 IQKIFWAHMTTAPKICGDVYEAILGAIFVDSKFSIEKVDEFVLNSLIKP 1389
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+SYERLE +GDS L + + F L P+ G LT R +L R A ++GL +
Sbjct: 1067 YSYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTTSRMVAEQNLELCRRATEVGLQGLI 1126
Query: 158 RHNKPLLEEQIREFSEAILDYPLHSNGLVDA--PKVLADIVESTIGAVFID 206
+ FS P + + + K+LAD+ E+ IG ID
Sbjct: 1127 LTTR---------FSRKQWVPPAKGHDSMQSMPKKILADVTEAIIGGCLID 1168
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQL 226
>gi|402079303|gb|EJT74568.1| dicer-like protein 1 [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 1607
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 33/214 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+E +GY F + LL AF PS P E SY+RLE++GD++L++ F +P+
Sbjct: 1307 KEKMGYEFKDARLLRSAFMHPSYPRVYENIPSYQRLEFLGDALLDMTCIDHLFGRFPDRD 1366
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI-----------REFSEAIL 176
P LT + A V+ + +A++LG H+++ K L+ QI R +A +
Sbjct: 1367 PQWLTEHKMAMVSNQFYGCLAVELGFHRHVVCLKTQLQGQIADWVDRLGERRRRAEQAAV 1426
Query: 177 DYP-----LHSNGLVD---APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---- 224
D N VD PK L D++E+ +GA+F+D V + E ++P
Sbjct: 1427 DAGRPAADFARNFWVDMEHPPKCLPDVLEAYVGALFVDAGYDYGAVEAFWAEHVRPWFAD 1486
Query: 225 MISPETLKT-HPVTELYEV------CQKNKLKVK 251
M + +T HPVT L + C ++L V+
Sbjct: 1487 MAAYDTYSAHHPVTHLNSILVHQLGCTHHRLLVR 1520
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQL 226
>gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101]
gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101]
Length = 241
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 31/253 (12%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERF--FSY-ERLEYVGDSVLNLLLTKE 118
+ + N ++ E+++G F NK +L A T S +F Y ERLE++GDSVL L +TK
Sbjct: 5 VKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 64
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY 178
F Y + G LT++R+ V L +V+ L L KY+R +K E++
Sbjct: 65 LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKG---EEL---------- 111
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPV 236
G + + AD +E+ I AV++D + D + + FK+++ I+ E +
Sbjct: 112 ----TGGRERTSIQADALEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFK- 166
Query: 237 TELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAK 289
T L EV QKN +L K H + I ++++G+G KKE N AAK
Sbjct: 167 TRLQEVLQKNGEVNIVYNLVKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQN-AAK 225
Query: 290 DALNNIERLLNEK 302
AL + + EK
Sbjct: 226 AALQRLGEIKWEK 238
>gi|150390513|ref|YP_001320562.1| ribonuclease III [Alkaliphilus metalliredigens QYMF]
gi|149950375|gb|ABR48903.1| Ribonuclease III [Alkaliphilus metalliredigens QYMF]
Length = 239
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 67 NLDEEEILGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFF 121
++D EE++ Y+F +K LL+EA T S ++ ERLE++GDSVL ++++ F
Sbjct: 11 SVDFEEMIQYQFKDKQLLKEALTHSSYANESKVKKIKHNERLEFLGDSVLGIIISDYIFK 70
Query: 122 LYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH 181
Y +LP G LT++R+ V L A K+ L +LR + E++
Sbjct: 71 KYTHLPEGDLTKVRANVVCEPALGSCATKINLGGFLRLGRG---EEV------------- 114
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM--ISPETLKTHPVTEL 239
+G +LAD E+ IGA+++D I + V L+ + + +L T L
Sbjct: 115 -SGGRQRESILADAFEALIGALYLDGGMVIAQTF-VLNHLIDSVEQATKGSLFRDYKTYL 172
Query: 240 YEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
E+ Q + + KES H + + +QLLG G KKE A RAAK+A+
Sbjct: 173 QELLQSKHSERITYQVIKESGPDHSKIFDVEVLLGEQLLGHGMGKSKKE-AEQRAAKEAV 231
Query: 293 NNIE 296
I+
Sbjct: 232 EKIK 235
>gi|333979683|ref|YP_004517628.1| ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823164|gb|AEG15827.1| Ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
Length = 243
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 35/240 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-ERFFSYE----RLEYVGDSVLNLLLTKEQFFLYPN 125
+E LG+R+ N++LL A T S E+ F + RLE++GD+VL L+++ + YP
Sbjct: 12 KEKLGFRWQNEDLLCLALTHSSYAYEKIFRGQENNQRLEFLGDAVLELVVSDYLYRTYPG 71
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G LTRLR+A V LAR A +L L L + EE+ +G
Sbjct: 72 HTEGELTRLRAAIVCEPSLARTARELDLGSCLYMGRG--EER---------------SGG 114
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEV 242
+ P +LAD E+ +GAV++D +++ KV + LKP+I ++ TEL E+
Sbjct: 115 RERPSILADAFEALLGAVYLD--QGLEMARKVALQYLKPVIDDVLEGRVERDYKTELQEI 172
Query: 243 CQ-KNKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q + ++ + + L +E H ++ + +GRG KKE A +AA AL +
Sbjct: 173 LQEEGQVDISYAILREEGPDHHKIFTAAVYFGGKEMGRGQGRTKKE-AEQQAACRALARL 231
>gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
Length = 235
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 108/234 (46%), Gaps = 32/234 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP--ERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE +GY F NK ++ A T S + F+Y ERLE++GDSVL L+++ F +LP
Sbjct: 16 EEKIGYEFKNKTYIQTALTHSSFANEHKEFNYNERLEFLGDSVLGLVVSDYLFRARNDLP 75
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTRLR+ V E L+ VA K+ L +L L ++G D
Sbjct: 76 EGKLTRLRANVVCEESLSAVARKINLGDHL-----------------FLGKGEKTSGGSD 118
Query: 188 APKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+LAD E+ I A+++D + + D + ++ + I + + T L E+ Q
Sbjct: 119 RDSILADATEAVIAAIYLDGGFDQAKDFILSNLRDTIAKNIDGNIFRDYK-TILQEIIQG 177
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
N K+ + L ES H + +G G KKE A AA+DAL
Sbjct: 178 NNGKISY-KLVGESGPDHNKEFEMQVKCGQDTIGIGKGKNKKE-AEKEAARDAL 229
>gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+]
gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+]
Length = 1568
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 43/267 (16%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+GYRF LL AF P+ P E+ SY+RLE++GD++L++ F +P P
Sbjct: 1264 MGYRFQYPRLLRSAFQHPTYPTSWEKLPSYQRLEFLGDALLDMACIDHLFHRFPGADPQW 1323
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----------------SEA 174
LT + A V+ + L +A+ +G H+ L+H+ P ++ +I + E
Sbjct: 1324 LTEHKMAMVSNQFLGCLAVYIGFHRSLQHSSPAVQSEIASYVTEIEEALAAAKAAAVQEG 1383
Query: 175 ILDYPLHSNGLVDA---PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
+ + VD PK L D +E+ +GA+F+D + V F + ++ L
Sbjct: 1384 KSESNFARDFWVDCSRPPKCLPDTIEAYVGAIFVDSSYDYQTVQDFFDKHIQFWFEDMRL 1443
Query: 232 -----KTHPVTEL-YEV-----CQKNKLKVK--FVD-------LWKESTAFHIFIEDQLL 271
HPVT L +E+ CQ+ +L + VD + ++ + + Q L
Sbjct: 1444 YDTFANKHPVTFLGHEMQHRFRCQEWRLLTREIMVDKDEEGGMMGEKQVVCAVMVHGQKL 1503
Query: 272 GRGAYAPKKEIAHNRAAKDALNNIERL 298
A A + AAK AL +E L
Sbjct: 1504 AH-AVAQSARYSKIGAAKKALRELEGL 1529
>gi|381183950|ref|ZP_09892635.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380316161|gb|EIA19595.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 230
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 34/242 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F N LL+ AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFKNIELLQNAFTHSSYVNEHRHENLKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGQMTKMRAAIVCEPSLVEFAEMVHFSKYIRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + I V + + L+ P I ++T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIQAVIRFLERLVFPKIDTGIYMQTVDFKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
Q+++ + D+ E+ H + + Q+LG+G KK+ N AA+ A+ +
Sbjct: 169 QRDRDVLIQYDILGETGPAHNKAFEAQVVVNGQVLGKGTGRTKKQAEQN-AAEYAIRQVL 227
Query: 297 RL 298
R+
Sbjct: 228 RV 229
>gi|167046028|gb|ABZ10545.1| dicer-like protein D [Trichoplax adhaerens]
Length = 351
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 23/172 (13%)
Query: 76 YRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLR 135
Y+FNN L AFT S +Y+RLEY+GD++L LL + + P PG ++ +
Sbjct: 182 YQFNNFYWLRIAFTHSSVASE--NYQRLEYLGDAILEYLLIEFVYCRKPYFGPGKISHFK 239
Query: 136 SANVNTEKLARVAIKLGLHKYLR-HNKPLLE--EQIREFSEAILD--------------- 177
S + + +AI + ++R H+K L+ + I+ F E +LD
Sbjct: 240 SVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDHQPDIGHFAN 299
Query: 178 --YPLH-SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
Y L+ SN PKV AD+ E+ I A+++DC + VWKV ++++ ++
Sbjct: 300 LAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQRIL 351
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 95 ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLH 154
+ FF++ERLE +GDS L + T + FF PN+ G+++ +R+ NV+ L+R + GL
Sbjct: 3 DDFFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKLKGLT 62
Query: 155 KYLRHNKPLLEEQ 167
Y + N P +Q
Sbjct: 63 LY-QFNTPFKLKQ 74
>gi|187735104|ref|YP_001877216.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835]
gi|187425156|gb|ACD04435.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835]
Length = 231
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 48/232 (20%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC---PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E+ LGYRFNN +LL +A T PS PE +YERLE++GD++L L +T+ + P P
Sbjct: 7 EDKLGYRFNNPDLLVQALTHPSTDSKPETRRAYERLEFLGDAILQLAVTQYLYHHMPQSP 66
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT+LR+ V+ L + LGL K++ K EE+ G
Sbjct: 67 EGELTQLRARTVSRANLGKYGFILGLDKHIALGKG--EERA---------------GGRG 109
Query: 188 APKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
++A+ ES GA+ +D + ++ + +V E L ++ +HP E+ K
Sbjct: 110 KNSIIANTFESVFGAMSLDSDYETAKAVALRVLHEAL------DSAASHPK----EINPK 159
Query: 246 NKLKVKFVDLWKESTAF----------------HIFIEDQLLGRGAYAPKKE 281
+L+ D+ E+ ++ +F +G G+ A K++
Sbjct: 160 GELQAILQDILPETPSYETEEKGPRDAENRFESRVFWHGHAIGAGSGASKRK 211
>gi|237746716|ref|ZP_04577196.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
gi|229378067|gb|EEO28158.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
Length = 273
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 26/182 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY--ERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
++ +GY F++ LLE A T S + S+ ERLE++GDS+LN + + Y L
Sbjct: 13 QDRIGYTFHDAALLETAMTHRS----YSSHHNERLEFLGDSLLNCVTAINLYERYAALNE 68
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
GSL+RLRS+ V + L +A KL L ++LR L E +++ G
Sbjct: 69 GSLSRLRSSLVRQQALYEIACKLELSRFLR----LGEGELK-------------AGGFKR 111
Query: 189 PKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
P +LAD +E+ GAVF+D + ++ ++F +++K + PET T+L E Q +
Sbjct: 112 PSILADAMEALFGAVFLDAGFETVKRVITRLFADMMKE-LDPETYGKDAKTQLQEYLQGH 170
Query: 247 KL 248
K+
Sbjct: 171 KM 172
>gi|56478590|ref|YP_160179.1| ribonuclease III [Aromatoleum aromaticum EbN1]
gi|81598583|sp|Q5P086.1|RNC_AZOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56314633|emb|CAI09278.1| ribonuclease III [Aromatoleum aromaticum EbN1]
Length = 225
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 65 ANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLY 123
A LD + LG+RF+N LLE+A T S + + ERLE++GDS+LN ++ F +
Sbjct: 2 AGKLDRLQRSLGHRFDNPALLEQALTHRSFGQP--NNERLEFLGDSILNCVVAIALFERF 59
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
+L G ++RLR++ V + L RVA++L L +YLR L E +++ +
Sbjct: 60 ASLREGEMSRLRASLVCQDGLHRVALELDLGEYLR----LGEGEMK-------------S 102
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELY 240
G P +LAD +E+ A F+D V L PMI+ P P T L
Sbjct: 103 GGFRRPSILADALEAVFAATFLD--QGFAAAKAVIDRLYDPMIAAIDPGVAAKDPKTALQ 160
Query: 241 EVCQKNKL 248
E+ Q KL
Sbjct: 161 ELLQGRKL 168
>gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50]
gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3]
gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|22654068|sp|Q931T1.1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043357|sp|A7X1J9.1|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50]
gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3]
Length = 243
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 34/239 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ + N +L ++AF+ S R ERLE++GD+VL L +++ F +PNLP
Sbjct: 24 LGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+GL++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIGLNEMI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYE-VCQK 245
P +++D E+ IGA+++D +DIVWK ++++ P + L T+ E V Q+
Sbjct: 127 PSLISDAFEAFIGALYLD--QGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
NK V + + +E A H + ++ + + G KKE + RAAK A ++++
Sbjct: 185 NKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKE-SEQRAAKSAYKQLKQI 242
>gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122]
gi|90101646|sp|Q2YXI3.1|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122]
Length = 243
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 34/239 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ + N +L ++AF+ S R ERLE++GD+VL L +++ F +PNLP
Sbjct: 24 LGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+GL++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIGLNEMI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYE-VCQK 245
P +++D+ E+ IGA+++D +DIVWK ++++ P + L T+ E V Q+
Sbjct: 127 PSLISDVFEAFIGALYLD--QGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
NK V + + +E A H + ++ + + G KKE + RAA+ A ++++
Sbjct: 185 NKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKE-SEQRAAESAYKQLKQI 242
>gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
gi|167655280|gb|EDR99409.1| ribonuclease III [Eubacterium siraeum DSM 15702]
gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a]
Length = 226
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 40/239 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP--ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+I+GY F N LL+EA T S + S ERLE++GDSVL++++++ F NLP
Sbjct: 5 EQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTNLPE 64
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT++R++ V L A K+ L KY+ K EE H+ G D
Sbjct: 65 GQLTKIRASVVCENALYPFARKIDLGKYIFLGKG--EE--------------HTGGR-DR 107
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP-ETLKTHPV------TELYE 241
+LAD E+ I A+++D ++ + + P I P + L T T L E
Sbjct: 108 HSILADAFEALIAAIYLDGG------FEAARSFILPFIPPLDKLSTGKFLLGDYKTVLQE 161
Query: 242 VCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
+ Q+N + ++ ES H + + Q++G G KKE A AAK+A++
Sbjct: 162 IIQQNPEERVTYEISDESGQAHNKQFTANVLLNGQIIGTGKGKSKKE-AEQSAAKEAIS 219
>gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1358
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 19/193 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E I+G+ F +LL +A T S SY RLE++GD++L+ ++ + F L PG
Sbjct: 1078 ERIIGHNFQRPHLLAQALTHSSMQGHESASYGRLEFIGDAILDFMVIQHIFNRDQTLSPG 1137
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI----------LDYP 179
+LT L+ A V+ LA V + GL K+L L I ++ + +
Sbjct: 1138 ALTLLKGAMVSNSALAAVCVSSGLRKHLLFESYQLAGSIEVYANELKARQQKEYLAAERE 1197
Query: 180 LHSNGL----VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETL 231
S G ++ PK L+D+VES IGA++I + + ++F +LKP I+ +TL
Sbjct: 1198 GRSPGQYWLGIEPPKALSDVVESIIGAIYISDDFTPIGAERLFNNVLKPFYDKHITLQTL 1257
Query: 232 KTHPVTELYEVCQ 244
HP L+E+ Q
Sbjct: 1258 SHHPTKILFELFQ 1270
>gi|392960548|ref|ZP_10326016.1| Ribonuclease 3 [Pelosinus fermentans DSM 17108]
gi|421054695|ref|ZP_15517660.1| ribonuclease III [Pelosinus fermentans B4]
gi|421061063|ref|ZP_15523447.1| Ribonuclease 3 [Pelosinus fermentans B3]
gi|421063755|ref|ZP_15525701.1| Ribonuclease 3 [Pelosinus fermentans A12]
gi|421071558|ref|ZP_15532674.1| Ribonuclease 3 [Pelosinus fermentans A11]
gi|392440376|gb|EIW18056.1| ribonuclease III [Pelosinus fermentans B4]
gi|392446823|gb|EIW24094.1| Ribonuclease 3 [Pelosinus fermentans A11]
gi|392452138|gb|EIW29091.1| Ribonuclease 3 [Pelosinus fermentans B3]
gi|392455125|gb|EIW31932.1| Ribonuclease 3 [Pelosinus fermentans DSM 17108]
gi|392462325|gb|EIW38420.1| Ribonuclease 3 [Pelosinus fermentans A12]
Length = 242
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 35/234 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPS----CPERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG +F + NLL +A T S C + S+ ERLE++GD+VL+L++++ F + +LP
Sbjct: 20 LGVQFTDINLLHQALTHTSYANECKKSLISHNERLEFLGDAVLDLIVSEYLFRQFSHLPE 79
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT+ R+ V LAR A +LG+ +YL L S+G +
Sbjct: 80 GELTKARAVIVCEPTLARCAAELGIGEYL-----------------FLGKGETSSGGRER 122
Query: 189 PKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ-K 245
+LAD E+ IGA+++D + V K + L + E +K + T L EV Q K
Sbjct: 123 VSILADSFEAVIGAIYLDSGFLQVSNFVLKQLQADLNLVARGEYVKDYK-TVLQEVVQKK 181
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
N ++ + ++ E+ H + + L G+G KKE A AAK AL
Sbjct: 182 NDSRITY-EIISENGPDHNKLFEVIVLVNTDLFGKGLGKSKKE-AEQYAAKQAL 233
>gi|421074186|ref|ZP_15535226.1| Ribonuclease 3 [Pelosinus fermentans JBW45]
gi|392527692|gb|EIW50778.1| Ribonuclease 3 [Pelosinus fermentans JBW45]
Length = 242
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 35/234 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPS----CPERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG +F + NLL +A T S C + S+ ERLE++GD+VL+L++++ F + +LP
Sbjct: 20 LGVQFTDINLLHQALTHTSYANECKKTLISHNERLEFLGDAVLDLIVSEYLFRQFSHLPE 79
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT+ R+ V LAR A +LG+ +YL L S+G +
Sbjct: 80 GELTKARAVIVCEPTLARCAAELGIGEYL-----------------FLGKGETSSGGRER 122
Query: 189 PKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ-K 245
+LAD E+ IGA+++D + V + + L + E +K + T L EV Q K
Sbjct: 123 VSILADSFEAVIGAIYLDSGFLQVSNFVLRQLQADLHLVARGEYVKDYK-TVLQEVVQKK 181
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
N K+ + ++ E+ H + + L G+G KKE A AAK AL
Sbjct: 182 NDSKITY-EIISENGPDHNKLFEVIVLVNTDLFGKGLGKSKKE-AEQYAAKQAL 233
>gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3]
Length = 226
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 40/239 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP--ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+I+GY F N LL+EA T S + S ERLE++GDSVL++++++ F NLP
Sbjct: 5 EQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTNLPE 64
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT++R++ V L A K+ L KY+ K EE H+ G D
Sbjct: 65 GQLTKIRASVVCENALYPFARKIDLGKYIFLGKG--EE--------------HTGGR-DR 107
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP-ETLKTHPV------TELYE 241
+LAD E+ I A+++D ++ + + P I P + L T T L E
Sbjct: 108 HSILADAFEALIAAIYLDGG------FEAARNFILPFIPPLDKLSTGKFLLGDYKTVLQE 161
Query: 242 VCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
+ Q+N + ++ ES H + + Q++G G KKE A AAK+A++
Sbjct: 162 IIQQNPEERVTYEISDESGQAHNKQFTANVLLNGQIIGTGKGKSKKE-AEQSAAKEAIS 219
>gi|392596196|gb|EIW85519.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 1520
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 92/176 (52%), Gaps = 12/176 (6%)
Query: 74 LGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
LGY F+ +LL EA T PS SY+RLE++GD++L++++ + F YP G L+
Sbjct: 1191 LGYEFHRGDLLVEAATHPSFATSAGASYQRLEFLGDALLDVVVMRYLFHKYPRATSGQLS 1250
Query: 133 RLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL----VD 187
RS V LA VA+K L LH+ L N L I + + P L D
Sbjct: 1251 VARSRAVCGPTLASVAVKRLNLHQILLINNVELSIAISRHVPLLQNLPTQEIVLKAWKYD 1310
Query: 188 APKVLADIVESTIGAVFIDC----NSSIDIVWKVFKELLKPMISPETLKTHPVTEL 239
PK L+DI+ES GAV +D + +V +V E+L+ +ISP + PVT+L
Sbjct: 1311 PPKALSDIMESVFGAVLVDSAYNYEKAAAVVEEVMSEVLE-LISPSVARD-PVTDL 1364
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+R E +GDSVL L +T YP+ G L++LR ++V+ L A ++GL +L
Sbjct: 1022 QRFETLGDSVLKLGVTVHIMNKYPHRHEGQLSKLRQSSVSNRTLLARAKEIGLEIFL 1078
>gi|339483365|ref|YP_004695151.1| Ribonuclease 3 [Nitrosomonas sp. Is79A3]
gi|338805510|gb|AEJ01752.1| Ribonuclease 3 [Nitrosomonas sp. Is79A3]
Length = 238
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F + LL+EA T S F ERLE++GD+VLN + + +P+LP G L+R
Sbjct: 21 IGYSFTERKLLQEALTHRS--HSAFHNERLEFLGDAVLNCAIAGLIYKYFPDLPEGHLSR 78
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ VN + L+ +A+ L + K +R L E +++ +G P +LA
Sbjct: 79 LRANFVNQQALSDMALSLQMDKLIR----LGEGELK-------------SGGCQRPSILA 121
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D +E+ +GA+++D N + D++ ++ ++ I T P T L E Q K+ +
Sbjct: 122 DALEAVLGAIYLDSNYARAEDVIRTLYLPFMQS-IDFRTQGKDPKTLLQEFLQSQKMAL 179
>gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052]
gi|189043303|sp|A6LSM2.1|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052]
Length = 232
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 114/238 (47%), Gaps = 31/238 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LG FNN LL+ A T S +F E RLE++GDSVL L +T+ F Y +
Sbjct: 10 EENLGVFFNNHTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEYLFNNYKHKT 69
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT++RS V L +A K+ L Y+R +K E+I E I
Sbjct: 70 EGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKG---EEITGGRERI------------ 114
Query: 188 APKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ AD VE+ I AV++D D + F+E++ I+ E + T+L E+ QK
Sbjct: 115 --SIQADAVEAIIAAVYLDKGIGFVRDFILLHFEEIINKAINNEIVLDFK-TKLQELLQK 171
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ V +L K H + I+ +L+G G+ KKE N AAK AL+ +E
Sbjct: 172 DGEVVIQYELTKFEGPPHRRKFFTNVVIDKKLMGEGSGYSKKEAEQN-AAKQALDILE 228
>gi|220931875|ref|YP_002508783.1| Ribonuclease III [Halothermothrix orenii H 168]
gi|219993185|gb|ACL69788.1| Ribonuclease III [Halothermothrix orenii H 168]
Length = 236
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 47/240 (19%)
Query: 77 RFNNKNLLEEAFT---------DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
RFN+ +LL++A T DP + ERLE++GDSVL+++++ +LY N P
Sbjct: 20 RFNDISLLQKAVTHKSFVHEKSDPDLEDN----ERLEFLGDSVLSIVIST---YLYKNFP 72
Query: 128 ---PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
G L ++R+ V++ LA A +LGL KY+ K E++ NG
Sbjct: 73 EYNEGELAKMRAYIVSSSHLACKARELGLGKYILMGKG---EEL--------------NG 115
Query: 185 LVDAPKVLADIVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+ +LAD +E+ IGA+++D N+ D++ FK+ +K + ++ + T L E
Sbjct: 116 GRERESILADTLEAVIGAIYLDQGFNTITDLLINFFKDDVKKLDQGNIIRDYK-TYLQEF 174
Query: 243 CQKN---KLKVKFVDLWK--ESTAFHIFIE--DQLLGRGAYAPKKEIAHNRAAKDALNNI 295
QK+ ++K ++ + + F + ++ + LGRG KKE A +AAKDAL+N+
Sbjct: 175 IQKDGSCEIKYNIINEYGPDHNKKFEVGVKVNGKELGRGTGFSKKE-AEQKAAKDALSNL 233
>gi|452124161|ref|ZP_21936745.1| ribonuclease III [Bordetella holmesii F627]
gi|452127550|ref|ZP_21940131.1| ribonuclease III [Bordetella holmesii H558]
gi|451923391|gb|EMD73532.1| ribonuclease III [Bordetella holmesii F627]
gi|451926830|gb|EMD76960.1| ribonuclease III [Bordetella holmesii H558]
Length = 251
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 22/195 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E LG+ F ++ LLE+A T S R ERLE++GDSVLN ++ F Y L G
Sbjct: 7 ETRLGHHFGDQALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYAKLDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+R+R+ V LA +A +L L YLR L E +++ +G P
Sbjct: 65 LSRVRANLVKQASLADIAQRLDLSLYLR----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LAD VE+ GAVF+D ++ ++ + + +L + P+TL T L E Q K+
Sbjct: 108 ILADTVEALFGAVFLDAGFAAARTVIERQYDPVLAS-VDPQTLGKDAKTLLQEFLQGRKM 166
Query: 249 KVKFVDLWKESTAFH 263
+ + A H
Sbjct: 167 ALPIYTVVATHGAAH 181
>gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
Length = 915
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 23/173 (13%)
Query: 76 YRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLR 135
Y+FNN L AFT S +Y+RLEY+GD++L LL + + P PG ++ +
Sbjct: 660 YQFNNFYWLRIAFTHSSVASE--NYQRLEYLGDAILEYLLIEFVYCRKPYFGPGKISHFK 717
Query: 136 SANVNTEKLARVAIKLGLHKYLR-HNKPLLE--EQIREFSEAILD--------------- 177
S + + +AI + ++R H+K L+ + I+ F E +LD
Sbjct: 718 SVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDHQPDIGHFAN 777
Query: 178 --YPLH-SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS 227
Y L+ SN PKV AD+ E+ I A+++DC + VWKV ++++ +++
Sbjct: 778 LAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQRILA 830
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
++L +A T S + FF++ERLE +GDS L + T + FF PN+ G+++ +R+ NV+
Sbjct: 469 SMLLQALTSLSADD-FFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSN 527
Query: 142 EKLARVAIKLGLHKYLRHNKPLLEEQ 167
L+R + GL Y + N P +Q
Sbjct: 528 SHLSRTSKLKGLTLY-QFNTPFKLKQ 552
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP
Sbjct: 8 QESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPE 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQL 226
>gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237, partial [Schizophyllum commune
H4-8]
Length = 1342
Score = 81.3 bits (199), Expect = 5e-13, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 17/237 (7%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP--ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
LGY F + LL EA T S + + SYERLE++GD+V+NL + + +P+ L
Sbjct: 1093 LGYTFRDGGLLCEALTHSSFASLDSYGSYERLEFLGDAVINLAVVDYLYRKFPDANSDQL 1152
Query: 132 TRLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNGLV 186
+ R+ V + L+ +++K L LHK + N L I + + + D P L +
Sbjct: 1153 SLPRARAVCNQALSALSVKHLQLHKSVLVNNVELSIAINKHAPILEDKPYPEILVKGWKL 1212
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELY--- 240
D PKVL+DI ES +GAVF+D +I V ++ ++ + +SP + PV+EL
Sbjct: 1213 DPPKVLSDIFESIVGAVFVDTGYDYEITAAVVEQAMEGLLVHLSP-AMPRDPVSELIIWV 1271
Query: 241 --EVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
C + +++ +FV + I++ LL ++ A++ AL ++
Sbjct: 1272 AKSTC-REQIEFRFVRRKQYPDGIAIYLHGTLLAGPITTMNHLVSRKLASERALADL 1327
Score = 45.1 bits (105), Expect = 0.041, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG + ++LL +A T P C F+ +RLE +GD+VL L T F YP+ G LT
Sbjct: 919 LGLPYIERDLLIQALTLP-CAGMPFNNQRLETLGDAVLELSTTVHLFNKYPHRHEGQLTP 977
Query: 134 LRSANVNTEKLARVAIKLGLHKYL 157
LR ++ + L A ++ L ++L
Sbjct: 978 LRQICISNKCLLTRAREVQLERFL 1001
>gi|373451001|ref|ZP_09542940.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
gi|371931808|emb|CCE77958.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
Length = 233
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 39/242 (16%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+++ Y+F + +LEEA T PS +R SYERLE++GDS+LN++++ F ++P
Sbjct: 13 KVINYKFTDHAILEEALTHPSVNKRNSEDQIVSYERLEFLGDSILNMVVSAMLFKMFPEE 72
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L + ++ V +A VA ++ L ++ I++ NG
Sbjct: 73 KEGALAKRKTDLVCGSTIANVAKEIELGNFI-----------------IMNNSERCNGGK 115
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID S + + +++L K ++ P P T L E Q
Sbjct: 116 CNLKNLENSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDP---PQDPKTSLQEWTQ 172
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIE--DQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+NKL + +L K++ H + IE D++ A AP K+IA +AA+ L I
Sbjct: 173 RNKLPLPKYELVKQTGPAHNPEFTISVCIESYDKV---SACAPSKKIAEQKAAELILEKI 229
Query: 296 ER 297
++
Sbjct: 230 KK 231
>gi|336270596|ref|XP_003350057.1| hypothetical protein SMAC_00946 [Sordaria macrospora k-hell]
gi|380095449|emb|CCC06922.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1586
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 30/196 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY+F + LL AF P+ P ER SY+RLE++GD++ +++ F +P P
Sbjct: 1263 ERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADP 1322
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF------------SEAI- 175
LT + A V+ + L ++ LG +K + P + + I E+ EA+
Sbjct: 1323 QWLTEHKMAMVSNQFLCCLSYHLGFYKCVATMSPSILKDIAEYVTEIEEALEAAKQEAVN 1382
Query: 176 ---------LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
DY +H + PK L+D+VE+ IGA+F+D +V + F + P
Sbjct: 1383 QGKAPEEYSRDYWVHITHVSRLPKCLSDVVEAYIGAIFVDSEYDYSVVQQFFTTHVLPFF 1442
Query: 227 SPETL-----KTHPVT 237
L HPVT
Sbjct: 1443 EDMHLYDSFANKHPVT 1458
>gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str.
Azul-94]
gi|189043299|sp|A0RRM7.1|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
Length = 223
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 30/229 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
EE LGY+F NK LL+EA T S + ERLE++GD+VL+L++ + FF + + G+
Sbjct: 8 EEHLGYKFKNKTLLKEALTHKSMKSSV-NNERLEFLGDAVLDLIVGEYLFFKFKDTDEGN 66
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L++LR+A VN + A ++ ++ L +L L +N + P
Sbjct: 67 LSKLRAALVNEKSFASISSQIRLGDFL-----------------YLSAAEDNNNGRNKPS 109
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNK 247
+++D +E+ +GA++++ S ++ V K+F LL+ I ++L T L E+ Q
Sbjct: 110 LVSDALEALMGAIYLE--SGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARF 167
Query: 248 LKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAK 289
+L S H +F+ D+ L R KKE + A K
Sbjct: 168 GVTPRYELVSSSGPDHKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWK 216
>gi|408789946|ref|ZP_11201583.1| Ribonuclease III [Lactobacillus florum 2F]
gi|408520787|gb|EKK20817.1| Ribonuclease III [Lactobacillus florum 2F]
Length = 236
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 22/137 (16%)
Query: 75 GYRFNNKNLLEEAFTDPSC----PERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
G +FN++ LL+EAFT S P++ YERLE++GD+V L+++ F YP +P G
Sbjct: 14 GIKFNDEKLLDEAFTQASYVNEHPDQGLKFYERLEFLGDAVYQLVVSDYIFERYPEMPQG 73
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LTRLR+A VN +R A + KY+R K EE+ G +
Sbjct: 74 RLTRLRAAMVNRHSFSRFARECNFEKYIRLGKG--EEKA---------------GARNRD 116
Query: 190 KVLADIVESTIGAVFID 206
+L DI ES IGAV++D
Sbjct: 117 SLLCDIFESFIGAVYLD 133
>gi|148652186|ref|YP_001279279.1| ribonuclease III [Psychrobacter sp. PRwf-1]
gi|148571270|gb|ABQ93329.1| RNAse III [Psychrobacter sp. PRwf-1]
Length = 259
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 36/243 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY FN+ +L + A T S + +YERLE++GD++L +++ + ++ YP G LTR
Sbjct: 33 LGYSFNDTSLAKLALTHRSFDGKI-NYERLEFLGDALLGMIIGEALYYQYPKQDEGRLTR 91
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L VA KL L YL IL G + +LA
Sbjct: 92 MRATLVRQESLVVVAQKLNLSSYL-----------------ILGVGERKGGGRERASILA 134
Query: 194 DIVESTIGAVFIDCNSSIDIV------WKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
D VES IGA+++D + S+D V W F EL+ + LK + L E Q K
Sbjct: 135 DTVESLIGAIYLD-SQSVDTVKACVLDW--FAELIDNVNDQRVLKDAK-SRLQEWLQGYK 190
Query: 248 LKVKFVDLW--KESTAFHIFIEDQLLGRGAYAP------KKEIAHNRAAKDALNNIERLL 299
++ DL + + +FI + P + IA + A+ +N + +L+
Sbjct: 191 FELPNYDLLETQGNAPNQVFIVRCEVDVPHTTPIVESGESRRIAEQKTAEKMINQLNKLV 250
Query: 300 NEK 302
N++
Sbjct: 251 NDR 253
>gi|357542095|gb|AET84855.1| RNAse III [Micromonas pusilla virus SP1]
Length = 238
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 39/246 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF----SYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E+++G + N +L ++AFT S + + S+E LE++GDSVL ++TK F Y +
Sbjct: 9 EQLVGTKIKNLDLYQKAFTHKSALKEYKQFTESFETLEFIGDSVLGFVITKFLFDRYESR 68
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G LT+ R+ V E LA++A LGL Y+ I+D NG
Sbjct: 69 QEGFLTKARTKLVRGETLAKIASYLGLQNYI-----------------IMDEKGMRNGWN 111
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFK--EL--LKPMISPETLKTHPVTELY 240
+ +L D E+ IGA+++D + + V ++F E+ L ++ + K H L
Sbjct: 112 NNSNILEDAFEALIGAIYMDIGLIHAKEFVLRIFTNPEIVDLNIIMIDDNYKDH----LM 167
Query: 241 EVCQKNKLKV---KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRA-----AKDAL 292
+ CQ N + + + V ++ IFI++ + RG KK+ N A KD L
Sbjct: 168 KYCQVNNMDLPEYRVVGQYEGLFYVDIFIQNACVSRGIAKNKKQAEQNGARMFFQVKDEL 227
Query: 293 NNIERL 298
N E L
Sbjct: 228 INQEEL 233
>gi|333897188|ref|YP_004471062.1| ribonuclease 3 [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112453|gb|AEF17390.1| Ribonuclease 3 [Thermoanaerobacterium xylanolyticum LX-11]
Length = 232
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP---ERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPN- 125
E+ +GY FNNK LL+ A T S + F S ERLE++GDSVL++++++ +LY N
Sbjct: 11 EKNMGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISE---YLYKNR 67
Query: 126 --LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
L G L++ R+ V LAR A ++ + KYL + EE
Sbjct: 68 TDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRG--EEM---------------T 110
Query: 184 GLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
G + +LAD +E+ I AV++D + + ++V ++F++++ ++S + + T+L E
Sbjct: 111 GGRNRDSILADAMEALIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYK-TKLQE 169
Query: 242 VCQK---NKLKVKFVDLW----KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
V QK ++ K +D + + +F+ + LGRG KKE A AA +AL+
Sbjct: 170 VTQKMGSERVIYKLIDEYGPDHNKMFVIEVFVGENRLGRGKGRSKKE-AEQYAAMEALSK 228
Query: 295 I 295
+
Sbjct: 229 M 229
>gi|303256999|ref|ZP_07343013.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
gi|330999188|ref|ZP_08322907.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
gi|302860490|gb|EFL83567.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
gi|329575388|gb|EGG56932.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
Length = 228
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE +GY F NK LL A T R FS E RLE++GDSVLN ++ F +
Sbjct: 8 EERIGYTFKNKELLRRAMT-----HRSFSAEHNERLEFLGDSVLNCVIGNALFLKDKHFD 62
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
GSL+R+RS V LA +A ++G+ +L+ + H+ G
Sbjct: 63 EGSLSRVRSNLVRQSALAEIAERIGISDFLK----------------VGAGEKHTGG-NH 105
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQ 244
P +AD VE+ GAVF D + V L +PM+S P TL T L EV Q
Sbjct: 106 RPSTIADAVEAIFGAVFTD--GGFEEAQTVIIRLYEPMLSQLTPTTLGKDAKTNLQEVLQ 163
Query: 245 KNKLKVKFVDLWKESTAFH 263
+ + D+ + A H
Sbjct: 164 RMHFGLPLYDIVEIRGAPH 182
>gi|451818132|ref|YP_007454333.1| ribonuclease 3 [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451784111|gb|AGF55079.1| ribonuclease 3 [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 232
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 115/240 (47%), Gaps = 31/240 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LG FNN LL+ A T S +F E RLE++GDSVL L +T+ F Y +
Sbjct: 10 EENLGVYFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDSVLQLCITEHLFNNYKHKS 69
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT++RS V L +A K+ L Y+R +K E++ E I
Sbjct: 70 EGELTKIRSLIVCENSLYEIAKKINLGNYIRMSKG---EELTGGRERI------------ 114
Query: 188 APKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ AD VE+ I AV++D D + F+E++ I+ + + T+L E+ QK
Sbjct: 115 --SIQADAVEAVIAAVYLDKGIGFVRDFILLHFEEVINKAINNKIVLDFK-TKLQELLQK 171
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+ +L K H + I+D+L+G G+ KKE N AAK AL+ +E +
Sbjct: 172 DGEVAIHYELVKYEGPPHRRKFYTNVKIDDKLMGEGSGYSKKESEQN-AAKQALDMLEGI 230
>gi|167046030|gb|ABZ10546.1| dicer-like protein D [Placozoa sp. DMJ-2008]
Length = 351
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 23/172 (13%)
Query: 76 YRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLR 135
Y+FNN L AFT S +Y+RLEY+GD+ L LL + + P PG ++ +
Sbjct: 182 YQFNNFYWLRIAFTHSSVASE--NYQRLEYLGDATLEYLLIEFVYCRKPYFGPGKISHFK 239
Query: 136 SANVNTEKLARVAIKLGLHKYLR-HNKPLLE--EQIREFSEAILD--------------- 177
S + + +AI + ++R H+K L+ + I+ F E +LD
Sbjct: 240 SVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDHQPDIGHFAN 299
Query: 178 --YPLH-SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
Y L+ SN PKV AD+ E+ I A+++DC + VWKV ++++ ++
Sbjct: 300 LAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQRIL 351
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 95 ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLH 154
+ FF++ERLE +GDS L + T + FF PN+ G+++ +R+ NV+ L+R + GL
Sbjct: 3 DDFFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKLKGLT 62
Query: 155 KYLRHNKPLLEEQ 167
Y + N P +Q
Sbjct: 63 LY-QFNTPFKLKQ 74
>gi|403417815|emb|CCM04515.1| predicted protein [Fibroporia radiculosa]
Length = 1463
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 34/248 (13%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
D ++ LGYRF LL EA T PS SY+RLE++GD++++L + + + +P
Sbjct: 1116 DLQDTLGYRFRCGKLLLEAVTHPSFGAAETSSYQRLEFLGDALIDLTVMRYLYNKFPEAT 1175
Query: 128 PGSLTRLRSANVNTEKLARVAIK-LGLHKYLRHNK-----------PLLEEQIREFSEAI 175
G L+ RS V LA VA+K LGL K L N P+LE E E I
Sbjct: 1176 SGQLSWARSRAVCAPALASVAVKRLGLQKLLLVNNVELSIAMGKCIPILESLSEE--EII 1233
Query: 176 LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSID----IVWKVFKELLKPMISPETL 231
L S D PK ++D++ES +GAVF+D + + + I +V +LL+ +++PE L
Sbjct: 1234 L-----SGWKQDPPKAMSDVLESVLGAVFVDLDFNFEKASSIAEQVLNDLLE-VLTPE-L 1286
Query: 232 KTHPVTELYE-VCQKNKLKVKF------VDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
PV+ L V Q +V + D+ K + + + + + L AP +A
Sbjct: 1287 PRDPVSNLMVWVAQAGCRRVTYRKSSSRPDV-KRNDSISVVVHEHTLVGPLVAPNLSLAK 1345
Query: 285 NRAAKDAL 292
A++ AL
Sbjct: 1346 GLASERAL 1353
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
+LL +A T PS F+ +RLE +GDSVL L F YP+ G L LR +V+
Sbjct: 950 DLLVQALTLPSA-NAGFNNQRLETLGDSVLKLATVVYLFNKYPHRHEGQLDVLRRNSVSN 1008
Query: 142 EKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD-----YPLHSNGLVDAPKVLADIV 196
L A ++GL +YL + +R + L P V + L D +
Sbjct: 1009 RTLLARAKEVGLEQYLSSEP----QSVRLWRYTALPDRDLFEPYRYVPRVFPRRSLQDCM 1064
Query: 197 ESTIGAVFI 205
E+ +GA F+
Sbjct: 1065 EALLGAAFV 1073
>gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427]
gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427]
Length = 240
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 68 LDE-EEILGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFF 121
LDE + L Y F N NLLEEA T S ER ERLE++GD++L+L++++ F
Sbjct: 14 LDEMQRKLSYTFTNSNLLEEALTHSSYANEHRNERVKDNERLEFLGDAILDLIISEYLFK 73
Query: 122 LYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH 181
+P +P G L+++R++ V LA++A +GL +Y+ +L
Sbjct: 74 KHPEMPEGDLSKIRASIVCEASLAKMARFIGLGEYI-----------------LLGKGEE 116
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTEL 239
G + +LAD E+ GA+F+D N + + ++ + S E L T T L
Sbjct: 117 MTGGRERASILADGFEALTGALFLDGGFNEAKCFLTDTLIAQVEQVASLEDLYTDYKTLL 176
Query: 240 YEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
E QK ++ E H ++ + LGRG KKE A AAK AL
Sbjct: 177 QECIQKVSNAPIHYEVVGEEGPDHDKYFYVEVYHDTISLGRGIGKSKKE-AEQDAAKKAL 235
Query: 293 NN 294
NN
Sbjct: 236 NN 237
>gi|336233266|ref|YP_004590012.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
gi|335345207|gb|AEH39753.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
Length = 226
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 35/238 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ +GY F N +LL A T S + ERLE++GDS+LN ++ K+ + +P + G
Sbjct: 10 QKFMGYTFTNISLLHHALTHRSASIK--HNERLEFLGDSILNFIIAKKLYHYFPEVNEGG 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++R+R+ V LA +A + L YL+ L +G
Sbjct: 68 MSRMRATLVRGNTLAEIACEFSLGNYLQ-----------------LGQGEQKSGGFKRES 110
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LA+ +E+ I +F+D N + IV K ++ K ISP ++ P T L E Q
Sbjct: 111 ILANTIEAIIAGIFLDSNIYTVEKIVLKWYQYRFKK-ISPFNIQKDPKTRLQEYLQAKHF 169
Query: 249 KVKFVDLWKESTAFH--IF--------IEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ ++ K H IF I D L+G G+ K E AA++AL +E
Sbjct: 170 PLPLYNIGKIYGEAHKQIFKINCKINGIHDILIGIGSSRRKAE---QNAAQNALIKME 224
>gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
Length = 232
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 27/193 (13%)
Query: 68 LDE-EEILGYRFNNKNLLEEAFTDPS-CPERFFSY-ERLEYVGDSVLNLLLTKEQFFLYP 124
LDE ++ +GYR+ + LL A T S ER + ERLE++GD+VL L ++ FF +P
Sbjct: 2 LDELQDKIGYRYQDPELLVRALTHSSYANERHMEHNERLEFLGDAVLELCISNVLFFRFP 61
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
P G LTRLR+A V+ LAR+A L L Y+ L G
Sbjct: 62 RAPEGHLTRLRAALVSEPTLARLARSLTLGDYI-----------------FLGRGEELQG 104
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
D VLAD +E+ +GAV++D S D ++ L + I P+ ++ PV++ +
Sbjct: 105 GRDRDSVLADTLEAILGAVYLD--SGYDGAFECIAALFEDFI-PDRVEALPVSKDF---- 157
Query: 245 KNKLKVKFVDLWK 257
K++L+ K L++
Sbjct: 158 KSRLQEKTQGLFR 170
>gi|452966440|gb|EME71451.1| dsRNA-specific ribonuclease [Magnetospirillum sp. SO-1]
Length = 229
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 40/241 (16%)
Query: 73 ILGYRFNNKNLLEEAFTDPSC------PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+LG+ F LL +A T PS P YERLE++GD VL L++ + F +P+
Sbjct: 11 VLGHAFGRPELLAQALTHPSSIQQGRRPRGSDPYERLEFLGDRVLGLVVAEMLFTRFPDE 70
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L R +A V E +ARVA ++GL ++L +L G
Sbjct: 71 AEGALARRHAALVRREAVARVAGEIGLGRHL-----------------VLAKGEDEAGGR 113
Query: 187 DAPKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
+ P +LAD E+ IGA++ D ++ D V ++ L++ ++P T L E Q
Sbjct: 114 NNPGILADACEAVIGALYADAGFAVAADFVRARWEPLMEEALAP---PKDAKTALQEWAQ 170
Query: 245 KNKLKVKFVDLWKESTAFH--IFIED-------QLLGRGAYAPKKEIAHNRAAKDALNNI 295
L++ + + H IF+ + +GRGA K +A AA L +
Sbjct: 171 GRGLQLPLYRVLGQEGPPHEPIFLMEVSVEGVGSAVGRGA---SKRVAEQAAAGTLLEQV 227
Query: 296 E 296
+
Sbjct: 228 K 228
>gi|379795598|ref|YP_005325596.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872588|emb|CCE58927.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 243
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 34/239 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ ++N +L ++AF+ S R ERLE++GD+VL L +++ F +PNLP
Sbjct: 24 LGFTYHNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+GL++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIGLNEMI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYE-VCQK 245
P +++D E+ IGA+++D +D+VW+ ++++ P + L T+ E V Q+
Sbjct: 127 PSLISDAFEAFIGAMYLD--QGLDVVWRFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
NK V + + +E A H + ++ Q + G KKE + RAA+ A ++++
Sbjct: 185 NKGDVTYNLIKEEGPAHHRLFTSEVILQGQAIAEGKGKTKKE-SEQRAAESAYKQLKQI 242
>gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis]
gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis]
Length = 1722
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 55/225 (24%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P + Y+ LE++GD++L+ L++ F + P
Sbjct: 1439 EQNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEHKTRMTP 1498
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----------------- 171
G LT LRSA VN LA + ++ H ++ LL E I+ F
Sbjct: 1499 GQLTDLRSALVNNTTLACICVRHRFHFFILAENALLTESIQSFVQFQESQNHRVTNHVRI 1558
Query: 172 --------------------SEAILDYPLHSNGL-------------VDAPKVLADIVES 198
+EA L NG VD PK L D++E+
Sbjct: 1559 LMEESDVQPEPLDSDDELELAEAAQQQKLAINGADAPHVGEFNISHNVDVPKALGDVLEA 1618
Query: 199 TIGAVFIDCNSSIDIVWKVFKELLKPMI--SPETLKTHPVTELYE 241
I AV++DC + W+V L +P + + +P+ +L+E
Sbjct: 1619 LIAAVYLDCR-DLTTTWQVVYRLFEPELLEFSRNVPLNPIRQLFE 1662
>gi|311104757|ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8]
gi|310759446|gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8]
Length = 253
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L + F++ LLE+A T S R ERLE++GDSVLN ++ F Y + G
Sbjct: 7 ENRLDHHFSDPALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYSKIDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +L L +YLR L E +++ +G P
Sbjct: 65 LSRLRANLVKQASLADIAQRLELSQYLR----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D D +V +P+++ P+TL T L E Q K
Sbjct: 108 ILADTVEALFGAVFLDAG--FDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRK 165
Query: 248 LKVKFVDLWKESTAFH 263
L + + A H
Sbjct: 166 LALPLYTVVATHGAAH 181
>gi|357462183|ref|XP_003601373.1| Ribonuclease 3-like protein [Medicago truncatula]
gi|355490421|gb|AES71624.1| Ribonuclease 3-like protein [Medicago truncatula]
Length = 248
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 62/99 (62%), Gaps = 18/99 (18%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E ILGY F NK+LLEEAFT + E SYE+LEY+GD+VL +FF
Sbjct: 59 EAILGYEFKNKHLLEEAFTHSTYGAEDDLSYEQLEYLGDAVLA------KFF-------D 105
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI 168
S+T NV++EKLARVAIK GL +YLRH KP L E+
Sbjct: 106 SIT----MNVDSEKLARVAIKHGLDRYLRHKKPQLGEEF 140
>gi|374854311|dbj|BAL57196.1| ribonuclease III [uncultured prokaryote]
Length = 239
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 35/245 (14%)
Query: 66 NNLDEEEILGYRFNNKNLLEEAFTDPS-C---PERFFSYERLEYVGDSVLNLLLTKEQFF 121
+ LD +G F + +LL A T S C PE ERLE++GD+VL+ ++ + +
Sbjct: 9 DPLDWSHQVGLTFRDWSLLLRALTHRSYCNEHPEVTEDNERLEFLGDAVLDFIVGEWVYH 68
Query: 122 LYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH 181
YP L G LTRLRSA V E+LA A ++ L LR EA
Sbjct: 69 HYPELREGELTRLRSALVRNEQLASFARQIDLGAALRLGA----------GEA------- 111
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH---PVTE 238
++G +L E+ IGA+++D ++ + + L+ ++ TH P +
Sbjct: 112 ASGARQRTSLLGSAFEALIGALYLDAG--LETASRFVRPFLEKTVAALEW-THLLDPKSR 168
Query: 239 LYEVCQKNKLKV-KFVDLWKEST------AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
L E Q +L ++V + ++I D+ GRGA P K+IA +AA+DA
Sbjct: 169 LQEWAQAQRLGTPRYVTIAAHGPEHAPLFEVEVYIGDRAYGRGA-GPNKQIAALKAAQDA 227
Query: 292 LNNIE 296
L IE
Sbjct: 228 LQKIE 232
>gi|422323120|ref|ZP_16404160.1| ribonuclease 3 [Achromobacter xylosoxidans C54]
gi|317401886|gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54]
Length = 253
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L + F + LLE+A T S R ERLE++GDSVLN ++ F Y + G
Sbjct: 7 ENRLDHHFGDPALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYSKIDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +L L +YLR L E +++ +G P
Sbjct: 65 LSRLRANLVKQASLADIAQRLELSQYLR----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D D +V +P+++ P+TL T L E Q K
Sbjct: 108 ILADTVEALFGAVFLDAG--FDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRK 165
Query: 248 LKVKFVDLWKESTAFH 263
L + + A H
Sbjct: 166 LALPVYTVVATHGAAH 181
>gi|346318518|gb|EGX88121.1| RNase3 domain protein [Cordyceps militaris CM01]
Length = 1455
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 73 ILGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
++GYRF + LL AFT PS E Y+ LE++GD++L++ + F +P+ P L
Sbjct: 1178 LIGYRFRSPLLLRSAFTHPSYKAEEIPDYQTLEFLGDALLDMAIVDHLFRAHPDAGPQWL 1237
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE-------------AILDY 178
T + + + L + + LGL + + + QIR F E A
Sbjct: 1238 TEHKMGVCSNQFLGYLCVSLGLQREVLAADAAVPGQIRSFEERLAYLKDAAETAAAQQGR 1297
Query: 179 PLHSNGLVDA---PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
P+ A PKVLAD+VE+ IGA+F+D +V + F+ ++P I
Sbjct: 1298 PVSKGYWTLATRPPKVLADVVEALIGAMFVDARYDYAVVQRFFEAFVRPHI 1348
>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
Length = 254
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 34/242 (14%)
Query: 71 EEILGYRFNNKNLLEEA-----FTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYP 124
EE LGYRF++ LEEA FT+ + ERLE++GD+VL L++ + L+P
Sbjct: 15 EERLGYRFSSLERLEEATIHKSFTNETKKGGVRRDNERLEFLGDTVLGLVVAEYLMRLWP 74
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
+ P G L++L+ V+ LA++A +GL +YL + Q RE +
Sbjct: 75 DSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLIGRGEEMTQGREKN------------ 122
Query: 185 LVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+L+D +E+ I A++ D +++ + + F+EL + + E++ + T+L E
Sbjct: 123 -----SILSDALEAVIAAIYQDGGLDAARQFILREFRELFESVSRGESVADYK-TQLQEY 176
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
CQ+ + + +S H + I D+ G G KKE A +AAK AL I
Sbjct: 177 CQRELETLPQYVITGQSGPDHQKVFEVAVRIRDKNWGEGQGHSKKE-AEQKAAKSALERI 235
Query: 296 ER 297
R
Sbjct: 236 AR 237
>gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008]
Length = 352
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 20/172 (11%)
Query: 65 ANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQF 120
ANNL+ E+++GY F NK + A T S + E +LE++GD++L ++ + F
Sbjct: 179 ANNLERLEKVIGYSFQNKLFMIRALTHSSYHHHNIAIESNQKLEFLGDTILQYIIARHFF 238
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI----- 175
+P+ P L + A VN + LA + I +G+ KY+ P L I +F + I
Sbjct: 239 NSHPDAKPAKLHDFQEAIVNNKCLADIGIAIGVSKYIFQESPDLFRDINQFVKIITCDYM 298
Query: 176 LDYPLHSNGLVDA-----------PKVLADIVESTIGAVFIDCNSSIDIVWK 216
+D ++ N +A PK ++D+VE+ IGA++ID SI V K
Sbjct: 299 IDDEMNYNDRTEALFENFTEEVKIPKPMSDVVEALIGAIYIDTGESIAEVTK 350
>gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066]
gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066]
Length = 233
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 24/178 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +GY F N +LLE+A T S ERLE++GDS+L +++ K+ + ++P+ P G
Sbjct: 14 EITIGYAFQNLSLLEQALTHRSFGP--VHNERLEFLGDSILGMVIAKKLYAMFPHNPEGD 71
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LTR+RS+ V LA +A + GL LR L+ G
Sbjct: 72 LTRMRSSLVRETTLAELAREFGLGNCLRLGPGELK-----------------TGGARRDS 114
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKV----FKELLKPMISPETLKTHPVTELYEVCQ 244
+LAD VES I A+++D D V ++ F LK I+P+ + P + L E+ Q
Sbjct: 115 LLADAVESVIAAMYLDSGEEFDTVRQIVLSWFHSRLK-TINPKVNQKDPKSSLQELLQ 171
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFQDIELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP----ETLKTHPVTELYE 241
P +LAD+ ES IGA+++D + ++ V K + ++ P I ET+ T+L E
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGLEKVVKFLERVIFPKIDAGAYLETVDYK--TQLQE 166
Query: 242 VCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
+ Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N
Sbjct: 167 IVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQ 225
Query: 295 I 295
+
Sbjct: 226 L 226
>gi|293604014|ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
gi|292817618|gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
Length = 253
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L + F + LLE+A T S R ERLE++GDSVLN ++ F Y + G
Sbjct: 7 ENRLDHHFGDPALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYSKIDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +L L +YLR L E +++ +G P
Sbjct: 65 LSRLRANLVKQASLADIAQRLELSQYLR----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D D +V +P+++ P+TL T L E Q K
Sbjct: 108 ILADTVEALFGAVFLDAG--FDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRK 165
Query: 248 LKVKFVDLWKESTAFH 263
L + + A H
Sbjct: 166 LALPLYTVVATHGAAH 181
>gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63]
Length = 225
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 111/238 (46%), Gaps = 34/238 (14%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSCPE----RFFSY-ERLEYVGDSVLNLLLTKEQFFLY 123
D ++ +GY F N +LL EA T S + Y ERLE++GD+VL+++++ F
Sbjct: 3 DLQKRIGYTFKNTDLLTEALTHSSYANEHKAKHIKYNERLEFLGDAVLSIVVSDYIFKHC 62
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
P LP G LT+LR++ V + L A ++ L KYL +L +N
Sbjct: 63 PELPEGELTKLRASLVCEKTLFEFAKQIELGKYL-----------------VLSKGERNN 105
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYE 241
G + P +L+D E+ I A++ID ID K + P I K T L E
Sbjct: 106 GGAERPSILSDAFEALIAAIYID--GGIDPASKHILNFVIPAIKNSKKKKLNDYKTALQE 163
Query: 242 VCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+ QKN + L ES H + + ++G+G KKE A +AA++AL
Sbjct: 164 IIQKNPGEQLEYVLVGESGPDHNKHFVVEVHLNSNVIGKGGGRSKKE-AEQQAAREAL 220
>gi|346310623|ref|ZP_08852638.1| ribonuclease III [Collinsella tanakaei YIT 12063]
gi|345897578|gb|EGX67495.1| ribonuclease III [Collinsella tanakaei YIT 12063]
Length = 241
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 31/222 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E+I G+ F N++LL+ A T PS E SYERLE++GDS+L ++ F YP
Sbjct: 11 EQICGHTFKNRDLLQSAITHPSAVEGQPVSASYERLEFLGDSILGSIVALSLFKSYPGFD 70
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTRL+ + V+ L+ V +LG+ K + R +HS
Sbjct: 71 EGKLTRLKVSLVSGMTLSEVGRELGIDKCIVFGASETGTGARG---------MHS----- 116
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQK 245
L ++ ES +GA+++D D+ + LKP ++ E + T+P + L E Q
Sbjct: 117 ---ALENVFESLVGAMYLD--GGWDVAEEFVHRTLKPHLATERAEHPTNPKSYLQECVQA 171
Query: 246 NKLKVKFVDLWKESTAFH--IFIEDQLL-----GRGAYAPKK 280
+ L+ L S H +F L+ GRG+ + KK
Sbjct: 172 DHLEAPSYKLVDTSGPAHEPVFTAVALVDGIRRGRGSGSSKK 213
>gi|387127249|ref|YP_006295854.1| ribonuclease III [Methylophaga sp. JAM1]
gi|386274311|gb|AFI84209.1| Ribonuclease III [Methylophaga sp. JAM1]
Length = 219
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 33/229 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG +FNN+ L +A T S + + ERLE++GD++L+ ++ +E F +P G ++R
Sbjct: 13 LGVQFNNEAFLLQALTHRSADPK--NNERLEFLGDAILSFVIAEELFNRFPQAKEGKMSR 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR++ V E LA +A +L L + L IL +G +LA
Sbjct: 71 LRASLVKGETLAEIARELKLGEVL-----------------ILGQGELKSGGFRRESILA 113
Query: 194 DIVESTIGAVFIDCNSSID----IVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL- 248
D +E+ IGA+F+DC ID ++ +++ E L + ET+K P T L E+ Q KL
Sbjct: 114 DALEAIIGALFLDCG--IDAVKPLILRLYDERLDSIDVTETVK-DPKTRLQELLQSRKLP 170
Query: 249 ----KVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
V+ ++ + F + LL + A + +H +A K LN
Sbjct: 171 LPLYSVREIESADKQPVFEASCQVSLLNKLVVA--QGSSHRKAEKKPLN 217
>gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
Length = 204
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 108/209 (51%), Gaps = 32/209 (15%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
+RLE++GD+VL LL+++ + +P+ G LT++R+A+V LA+VA L L + LR
Sbjct: 5 QRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLRMG 64
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
+ EE+ +G + P +LAD E+ +GA+++D ++ K E
Sbjct: 65 RG--EER---------------SGGRERPSILADAFEALLGAIYLD--HGLEAARKFVLE 105
Query: 221 LLKPMIS---PETLKTHPVTELYEVCQKNKLK-VKFVDLWKESTAFH-------IFIEDQ 269
L P+I+ L TEL E Q+N V +V + KE+ H + Q
Sbjct: 106 QLNPIITDVVAGRLDRDYKTELQERLQQNSPDPVSYV-IMKETGPDHDKVFTAGVIYRGQ 164
Query: 270 LLGRGAYAPKKEIAHNRAAKDALNNIERL 298
++G+G+ KKE A +AAKDA N ++ L
Sbjct: 165 IIGQGSGHSKKE-AEQQAAKDAFNRLDAL 192
>gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
77-13-4]
gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
77-13-4]
Length = 1452
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 28/200 (14%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+ +GYRF LL AF PS P + +Y+RLE++GD++L++ + F +P P
Sbjct: 1159 DAVGYRFKWPALLRSAFKHPSWPYDPVPNYQRLEFLGDALLDMAIVDNLFQRFPQADPQW 1218
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI--------------- 175
LT + A + + L + +KL LHK+L L QI ++ +
Sbjct: 1219 LTEHKMAMASNQFLGCLCVKLDLHKHLTSTTSSLIGQISSYASELELAEEDARQEAKANK 1278
Query: 176 ----LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
D+ L ++ PK AD++E+ +GA+F+D +V F ++P L
Sbjct: 1279 TAMRKDFWLRASA---PPKAFADVMEALVGAMFVDAKYDYTVVRNFFTRFIEPYFEDMAL 1335
Query: 232 -----KTHPVTELYEVCQKN 246
HPVT L + Q++
Sbjct: 1336 YDSFANKHPVTYLSKKMQQD 1355
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 15/132 (11%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
YERLE++GDS L + T F L P R + + L A+ LH+Y+R
Sbjct: 996 YERLEFLGDSFLKMATTISLFTLIPESDECGYHVERMILICNQNLFNHAVDRKLHEYIR- 1054
Query: 160 NKPLLEEQIREFSEAILDYPLHSNGLVD-------APKVLADIVESTIGAVFIDC-NSSI 211
+ + D PL A K +AD+ E+ IGA ++ S+
Sbjct: 1055 ------SKAFDRRSWYPDLPLKKGKAPKTEMRHNLADKSIADVCEALIGAAYLSGKGGSM 1108
Query: 212 DIVWKVFKELLK 223
D+ K ++K
Sbjct: 1109 DLAVKAVTRMVK 1120
>gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315]
gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2]
gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252]
gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476]
gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9]
gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781]
gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763]
gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719]
gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635]
gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299]
gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115]
gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300]
gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224]
gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937]
gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30]
gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3]
gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117]
gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765]
gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102]
gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132]
gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754]
gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819]
gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1]
gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796]
gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|379014424|ref|YP_005290660.1| ribonuclease III [Staphylococcus aureus subsp. aureus VC40]
gi|379020942|ref|YP_005297604.1| ribonuclease III [Staphylococcus aureus subsp. aureus M013]
gi|384547477|ref|YP_005736730.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
gi|384549988|ref|YP_005739240.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384861827|ref|YP_005744547.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|384864460|ref|YP_005749819.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|384867884|ref|YP_005748080.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|384869767|ref|YP_005752481.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
gi|385781461|ref|YP_005757632.1| ribonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
gi|386728916|ref|YP_006195299.1| ribonuclease III [Staphylococcus aureus subsp. aureus 71193]
gi|386830768|ref|YP_006237422.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387142842|ref|YP_005731235.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
TW20]
gi|387150376|ref|YP_005741940.1| Ribonuclease III [Staphylococcus aureus 04-02981]
gi|387602508|ref|YP_005734029.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
gi|387780342|ref|YP_005755140.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
LGA251]
gi|404478573|ref|YP_006710003.1| ribonuclease III [Staphylococcus aureus 08BA02176]
gi|415683823|ref|ZP_11449025.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
gi|415686422|ref|ZP_11450511.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
gi|415691082|ref|ZP_11453321.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
gi|416839277|ref|ZP_11902671.1| ribonuclease III [Staphylococcus aureus O11]
gi|416847441|ref|ZP_11907163.1| ribonuclease III [Staphylococcus aureus O46]
gi|417650101|ref|ZP_12299878.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
gi|417651508|ref|ZP_12301271.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
gi|417653242|ref|ZP_12302976.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
gi|417797282|ref|ZP_12444480.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21305]
gi|417797852|ref|ZP_12445038.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21310]
gi|417802647|ref|ZP_12449704.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21318]
gi|417887065|ref|ZP_12531204.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21195]
gi|417891736|ref|ZP_12535793.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21200]
gi|417892225|ref|ZP_12536279.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21201]
gi|417896147|ref|ZP_12540114.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21235]
gi|417899962|ref|ZP_12543861.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21259]
gi|417901830|ref|ZP_12545706.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21266]
gi|417903389|ref|ZP_12547236.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21269]
gi|418281364|ref|ZP_12894175.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21178]
gi|418282895|ref|ZP_12895652.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21202]
gi|418286395|ref|ZP_12899041.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21209]
gi|418308712|ref|ZP_12920318.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21194]
gi|418312603|ref|ZP_12924112.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21334]
gi|418316130|ref|ZP_12927574.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21340]
gi|418317682|ref|ZP_12929098.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21232]
gi|418321917|ref|ZP_12933256.1| ribonuclease III [Staphylococcus aureus subsp. aureus VCU006]
gi|418424373|ref|ZP_12997495.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS1]
gi|418427368|ref|ZP_13000380.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS2]
gi|418430209|ref|ZP_13003125.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433174|ref|ZP_13005951.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS4]
gi|418436845|ref|ZP_13008647.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS5]
gi|418439717|ref|ZP_13011424.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS6]
gi|418442769|ref|ZP_13014371.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS7]
gi|418445828|ref|ZP_13017304.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS8]
gi|418448772|ref|ZP_13020164.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS9]
gi|418451596|ref|ZP_13022930.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS10]
gi|418454652|ref|ZP_13025914.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11a]
gi|418457528|ref|ZP_13028731.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11b]
gi|418561408|ref|ZP_13125899.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21262]
gi|418566585|ref|ZP_13130958.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21264]
gi|418569081|ref|ZP_13133421.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21272]
gi|418570863|ref|ZP_13135124.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21283]
gi|418572298|ref|ZP_13136510.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21333]
gi|418579064|ref|ZP_13143159.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
gi|418582067|ref|ZP_13146145.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597732|ref|ZP_13161254.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21342]
gi|418599612|ref|ZP_13163092.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21343]
gi|418603104|ref|ZP_13166495.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21345]
gi|418638013|ref|ZP_13200316.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-3]
gi|418642636|ref|ZP_13204822.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-24]
gi|418645812|ref|ZP_13207930.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-55]
gi|418647514|ref|ZP_13209578.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-88]
gi|418649495|ref|ZP_13211523.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-91]
gi|418654805|ref|ZP_13216701.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-99]
gi|418655394|ref|ZP_13217257.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-105]
gi|418658909|ref|ZP_13220606.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-111]
gi|418661553|ref|ZP_13223138.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-122]
gi|418873581|ref|ZP_13427876.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-125]
gi|418875168|ref|ZP_13429428.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
gi|418878082|ref|ZP_13432317.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
gi|418880910|ref|ZP_13435129.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883839|ref|ZP_13438034.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
gi|418886494|ref|ZP_13440642.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
gi|418889024|ref|ZP_13443160.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
gi|418891866|ref|ZP_13445981.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
gi|418894932|ref|ZP_13449027.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
gi|418897770|ref|ZP_13451840.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900640|ref|ZP_13454697.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
gi|418903442|ref|ZP_13457483.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906168|ref|ZP_13460195.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418908944|ref|ZP_13462947.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG149]
gi|418911840|ref|ZP_13465823.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG547]
gi|418914331|ref|ZP_13468303.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418917028|ref|ZP_13470987.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
gi|418920310|ref|ZP_13474243.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
gi|418925466|ref|ZP_13479368.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928490|ref|ZP_13482376.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
gi|418931303|ref|ZP_13485144.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
gi|418934135|ref|ZP_13487958.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
gi|418946941|ref|ZP_13499340.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-157]
gi|418950559|ref|ZP_13502723.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-160]
gi|418955496|ref|ZP_13507436.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-189]
gi|418980062|ref|ZP_13527850.1| Ribonuclease III [Staphylococcus aureus subsp. aureus DR10]
gi|418982146|ref|ZP_13529854.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
gi|418985813|ref|ZP_13533499.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
gi|418988054|ref|ZP_13535727.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
gi|418991095|ref|ZP_13538756.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
gi|419774363|ref|ZP_14300333.1| ribonuclease III [Staphylococcus aureus subsp. aureus CO-23]
gi|419784967|ref|ZP_14310725.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-M]
gi|421150119|ref|ZP_15609775.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newbould
305]
gi|422742350|ref|ZP_16796356.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
gi|422745536|ref|ZP_16799475.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
gi|424768083|ref|ZP_18195376.1| ribonuclease III [Staphylococcus aureus subsp. aureus CM05]
gi|424785063|ref|ZP_18211866.1| Ribonuclease III [Staphylococcus aureus CN79]
gi|440706059|ref|ZP_20886808.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21282]
gi|440734679|ref|ZP_20914291.1| ribonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
gi|443636860|ref|ZP_21120953.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21236]
gi|443639588|ref|ZP_21123594.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21196]
gi|448742261|ref|ZP_21724211.1| ribonuclease III [Staphylococcus aureus KT/314250]
gi|448744051|ref|ZP_21725955.1| ribonuclease III [Staphylococcus aureus KT/Y21]
gi|54039243|sp|P66669.1|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54041615|sp|P66668.1|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56749389|sp|Q6G9Y0.1|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56749418|sp|Q6GHK2.1|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|73917582|sp|Q5HGJ9.1|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|122539710|sp|Q2FZ50.1|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|123486215|sp|Q2FHK5.1|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043358|sp|A6U152.1|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043359|sp|A5ISB8.1|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043360|sp|A6QGD3.1|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043361|sp|A8Z3R9.1|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315]
gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2]
gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9]
gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781]
gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763]
gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719]
gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635]
gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299]
gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115]
gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300]
gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224]
gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937]
gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3]
gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30]
gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
TW20]
gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102]
gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765]
gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117]
gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981]
gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754]
gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819]
gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796]
gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11]
gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46]
gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
gi|334267330|gb|EGL85794.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21305]
gi|334274283|gb|EGL92605.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21318]
gi|334276974|gb|EGL95213.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21310]
gi|341841048|gb|EGS82520.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21235]
gi|341843570|gb|EGS84793.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21259]
gi|341845669|gb|EGS86871.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21266]
gi|341850010|gb|EGS91143.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21269]
gi|341851022|gb|EGS91951.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21200]
gi|341858192|gb|EGS98993.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21201]
gi|341858487|gb|EGS99277.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21195]
gi|344177444|emb|CCC87912.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830251|gb|AEV78229.1| Ribonuclease III [Staphylococcus aureus subsp. aureus M013]
gi|364522450|gb|AEW65200.1| ribonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
gi|365165186|gb|EHM57014.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21178]
gi|365167103|gb|EHM58579.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21209]
gi|365168492|gb|EHM59830.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21202]
gi|365224532|gb|EHM65797.1| ribonuclease III [Staphylococcus aureus subsp. aureus VCU006]
gi|365237738|gb|EHM78581.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21194]
gi|365238248|gb|EHM79085.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21334]
gi|365241801|gb|EHM82536.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21340]
gi|365244950|gb|EHM85602.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21232]
gi|371969855|gb|EHO87293.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21264]
gi|371977619|gb|EHO94883.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21262]
gi|371978266|gb|EHO95516.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21272]
gi|371983043|gb|EHP00191.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21283]
gi|371984782|gb|EHP01891.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21333]
gi|374363121|gb|AEZ37226.1| ribonuclease III [Staphylococcus aureus subsp. aureus VC40]
gi|374393794|gb|EHQ65098.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21342]
gi|374393833|gb|EHQ65136.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21345]
gi|374396270|gb|EHQ67511.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21343]
gi|375014630|gb|EHS08311.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-99]
gi|375015749|gb|EHS09393.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-24]
gi|375022345|gb|EHS15828.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-55]
gi|375023237|gb|EHS16700.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-3]
gi|375029480|gb|EHS22807.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-88]
gi|375029868|gb|EHS23193.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-91]
gi|375037171|gb|EHS30223.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-111]
gi|375037264|gb|EHS30309.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-105]
gi|375038735|gb|EHS31696.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-122]
gi|375366118|gb|EHS70130.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-125]
gi|375370979|gb|EHS74771.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-189]
gi|375376731|gb|EHS80250.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-160]
gi|375377138|gb|EHS80628.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-157]
gi|377694204|gb|EHT18569.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
gi|377694738|gb|EHT19102.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
gi|377697091|gb|EHT21446.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
gi|377703108|gb|EHT27424.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
gi|377704427|gb|EHT28736.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
gi|377705631|gb|EHT29935.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
gi|377710477|gb|EHT34715.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
gi|377714585|gb|EHT38784.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
gi|377714926|gb|EHT39124.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
gi|377719842|gb|EHT44012.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
gi|377723217|gb|EHT47342.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725218|gb|EHT49333.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG547]
gi|377725447|gb|EHT49560.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
gi|377731198|gb|EHT55255.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
gi|377731803|gb|EHT55856.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
gi|377738402|gb|EHT62411.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742457|gb|EHT66442.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744535|gb|EHT68512.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
gi|377750202|gb|EHT74140.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
gi|377753982|gb|EHT77892.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG149]
gi|377754534|gb|EHT78443.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
gi|377757833|gb|EHT81721.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377760805|gb|EHT84681.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
gi|377765468|gb|EHT89318.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
gi|377765669|gb|EHT89518.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
gi|377770228|gb|EHT93990.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
gi|377770878|gb|EHT94637.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
gi|379992225|gb|EIA13682.1| Ribonuclease III [Staphylococcus aureus subsp. aureus DR10]
gi|383363568|gb|EID40900.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-M]
gi|383971889|gb|EID87951.1| ribonuclease III [Staphylococcus aureus subsp. aureus CO-23]
gi|384230209|gb|AFH69456.1| Ribonuclease III [Staphylococcus aureus subsp. aureus 71193]
gi|385196160|emb|CCG15781.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387718604|gb|EIK06562.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS3a]
gi|387718955|gb|EIK06911.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS2]
gi|387720280|gb|EIK08192.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS1]
gi|387725614|gb|EIK13218.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS4]
gi|387727949|gb|EIK15449.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS5]
gi|387730679|gb|EIK18040.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS6]
gi|387735756|gb|EIK22866.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS8]
gi|387737434|gb|EIK24500.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS7]
gi|387737988|gb|EIK25042.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS9]
gi|387744477|gb|EIK31241.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS10]
gi|387745767|gb|EIK32517.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11a]
gi|387747260|gb|EIK33969.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11b]
gi|394329509|gb|EJE55611.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newbould
305]
gi|402348720|gb|EJU83699.1| ribonuclease III [Staphylococcus aureus subsp. aureus CM05]
gi|404440062|gb|AFR73255.1| putative ribonuclease III [Staphylococcus aureus 08BA02176]
gi|408423428|emb|CCJ10839.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408425418|emb|CCJ12805.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408427406|emb|CCJ14769.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408429393|emb|CCJ26558.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408431381|emb|CCJ18696.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408433375|emb|CCJ20660.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408435366|emb|CCJ22626.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408437351|emb|CCJ24594.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|421956473|gb|EKU08802.1| Ribonuclease III [Staphylococcus aureus CN79]
gi|436431707|gb|ELP29060.1| ribonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
gi|436507590|gb|ELP43270.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21282]
gi|443406795|gb|ELS65366.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21196]
gi|443406837|gb|ELS65407.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21236]
gi|445546976|gb|ELY15252.1| ribonuclease III [Staphylococcus aureus KT/314250]
gi|445562647|gb|ELY18814.1| ribonuclease III [Staphylococcus aureus KT/Y21]
Length = 243
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 34/239 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ + N +L ++AF+ S R ERLE++GD+VL L +++ F +PNLP
Sbjct: 24 LGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+GL++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIGLNEMI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYE-VCQK 245
P +++D E+ IGA+++D +DIVWK ++++ P + L T+ E V Q+
Sbjct: 127 PSLISDAFEAFIGALYLD--QGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
NK V + + +E A H + ++ + + G KKE + RAA+ A ++++
Sbjct: 185 NKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKE-SEQRAAESAYKQLKQI 242
>gi|358051770|ref|ZP_09145878.1| ribonuclease III [Staphylococcus simiae CCM 7213]
gi|357258741|gb|EHJ08690.1| ribonuclease III [Staphylococcus simiae CCM 7213]
Length = 243
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 34/240 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ +NN +L ++AF+ S R ERLE++GD+VL L +++ F +P+LP
Sbjct: 24 LGFSYNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+GL++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIGLNEII-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYE-VCQK 245
P +++D E+ IGA+++D +DIVW+ ++++ P + + L T+ E V Q+
Sbjct: 127 PSLISDAFEAFIGALYLD--QGLDIVWQFAEKVIFPHVEHDELLGVVDFKTQFQELVHQQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
NK V + + +E A H + +E + G KKE + +AA+ A ++ LL
Sbjct: 185 NKGDVTYKLINEEGPAHHRLFTSEVILEGHAVASGKGKTKKE-SEQKAAEQAYKQLKNLL 243
>gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948]
gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948]
Length = 243
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 34/239 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ + N +L ++AF+ S R ERLE++GD+VL L +++ F +PNLP
Sbjct: 24 LGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+GL++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIGLNEMI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYE-VCQK 245
P +++D E+ IGA+++D +DIVWK ++++ P + L T+ E V Q+
Sbjct: 127 PSLISDAFEAFIGALYLD--QGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
NK V + + +E A H + ++ + + G KKE + RAA+ A ++++
Sbjct: 185 NKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKE-SEQRAAESAYKQLKQI 242
>gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 233
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 39/242 (16%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+++ Y+F + +LEEA T PS +R SYERLE++GDSVLN++++ F ++P
Sbjct: 13 KVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVSVMLFKMFPEE 72
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L + ++ V +A VA ++ L ++ I++ NG
Sbjct: 73 KEGALAKRKTDLVCGSTIANVAKEIELGNFI-----------------IMNNSERCNGGK 115
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID S + + +++L K ++ P P T L E Q
Sbjct: 116 CNLKNLENSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDP---PQDPKTSLQEWTQ 172
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIE--DQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+NKL + +L K++ H + IE D++ A AP K+IA +AA+ L I
Sbjct: 173 RNKLPLPKYELVKQTGPAHNPEFTISVCIESYDKV---SACAPSKKIAEQKAAELILEKI 229
Query: 296 ER 297
++
Sbjct: 230 KK 231
>gi|310658889|ref|YP_003936610.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [[Clostridium]
sticklandii]
gi|308825667|emb|CBH21705.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [[Clostridium]
sticklandii]
Length = 229
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 33/233 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+ Y F + LL+EA T S + ERLE++GDS+L L+++ F L LP
Sbjct: 12 INYEFQDLKLLKEALTHSSYSNEYKKIKNRNNERLEFLGDSILGLIISNYLFRLKKELPE 71
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT++R+A V L +A + L +YL K EE S G
Sbjct: 72 GELTKIRAAIVCERSLKDIAKSIHLGEYLYLGKG--EE---------------STGGRTR 114
Query: 189 PKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK- 245
+LAD E+ I A+++D + D V + +++ I + ++ + T+L E+ QK
Sbjct: 115 DSILADATEALIAAIYLDGGFRKATDFVLEHMGDIISQAIQGKIMRDYK-TQLQELIQKD 173
Query: 246 NKLKV--KFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
NK + K VD ++ ++F+ ++L+G G KKE A AAKDA+
Sbjct: 174 NKENIIYKLVDQLGPDHDKTFKMNVFLGEKLIGTGIGKSKKE-AEQEAAKDAM 225
>gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|238056573|sp|B3CMS0.1|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
Length = 230
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 39/242 (16%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+++ Y+F + +LEEA T PS +R SYERLE++GDSVLN++++ F ++P
Sbjct: 10 KVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVSVMLFKMFPEE 69
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L + ++ V +A VA ++ L ++ I++ NG
Sbjct: 70 KEGALAKRKTDLVCGSTIANVAKEIELGNFI-----------------IMNNSERCNGGK 112
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID S + + +++L K ++ P P T L E Q
Sbjct: 113 CNLKNLENSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDP---PQDPKTSLQEWTQ 169
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIE--DQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+NKL + +L K++ H + IE D++ A AP K+IA +AA+ L I
Sbjct: 170 RNKLPLPKYELVKQTGPAHNPEFTISVCIESYDKV---SACAPSKKIAEQKAAELILEKI 226
Query: 296 ER 297
++
Sbjct: 227 KK 228
>gi|237748853|ref|ZP_04579333.1| ribonuclease III [Oxalobacter formigenes OXCC13]
gi|229380215|gb|EEO30306.1| ribonuclease III [Oxalobacter formigenes OXCC13]
Length = 277
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 30/193 (15%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSY--ERLEYVGDSVLNLLLTKE 118
++ N N L E +GY F +LL+ A T S F S+ ERLE++GDS+LN +
Sbjct: 10 AMMNVNVLQER--IGYSFRQIDLLQTALTHRS----FSSHHNERLEFLGDSLLNCVTAIN 63
Query: 119 QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY 178
+ Y L G+L+RLRS+ V + L +A KL + +LR + L+
Sbjct: 64 LYERYVELNEGNLSRLRSSLVRQQALYEIAQKLDMSSFLRLGEGELKA------------ 111
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHP 235
G P +LAD +E+ GA+F+D S + V +V +L M+ PET
Sbjct: 112 -----GGFKRPSILADAMEALFGAIFLD--SDFETVRRVITQLFTDMMKGLDPETFGKDA 164
Query: 236 VTELYEVCQKNKL 248
T+L E Q +KL
Sbjct: 165 KTQLQEYLQGHKL 177
>gi|406027046|ref|YP_006725878.1| ribonuclease III [Lactobacillus buchneri CD034]
gi|405125535|gb|AFS00296.1| ribonuclease III [Lactobacillus buchneri CD034]
Length = 229
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 36/238 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
G ++++LL+EAFT S E YERLE++GD+VL L+++ F YP +P
Sbjct: 6 FGIHIDDQDLLDEAFTQASYVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIFKRYPKMPQ 65
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LTRLR+A VN + + A + ++Y+R K EE+ G D
Sbjct: 66 GRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKG--EEKA---------------GARDR 108
Query: 189 PKVLADIVESTIGAVFIDCNSS--IDIVWKV-FKELLKPMISPETLKTHPVTELYEVCQK 245
+L DI ES +G +++D + V KV F +L + M + H TEL E+ Q
Sbjct: 109 DSLLCDIFESFVGCLYLDQGQAEVTRFVTKVIFPKLDEGMFAE--FFDHK-TELQELAQA 165
Query: 246 NK---LKVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ + + VD + S ++ I+ +L G G KK A +AA+ AL +
Sbjct: 166 DGPVAIDYELVDEYGPDNDRSFKVNVSIDGKLYGVGIGHSKKG-AEQKAAQQALEQFD 222
>gi|333368329|ref|ZP_08460536.1| ribonuclease III [Psychrobacter sp. 1501(2011)]
gi|332977456|gb|EGK14231.1| ribonuclease III [Psychrobacter sp. 1501(2011)]
Length = 273
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 19/144 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+++LGY F + +L + A T S + +YERLE++GD++L +++ + ++ YPN G
Sbjct: 44 QKVLGYTFKDTSLAKLALTHRSFDGKI-NYERLEFLGDALLGMIIGEALYYQYPNQNEGR 102
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LTR+R+ V E L VA KL L +L IL G +
Sbjct: 103 LTRMRATLVRQESLVIVAQKLNLSSHL-----------------ILGVGERKGGGRERAS 145
Query: 191 VLADIVESTIGAVFIDCNSSIDIV 214
+LAD VES IGA+++D + S+D+V
Sbjct: 146 ILADTVESLIGAIYLD-SQSVDVV 168
>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
Length = 224
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 21/176 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LGY F N+NLL+EA T S + + ERLE++GD+VL+L++ + + +P+ P G
Sbjct: 7 QQTLGYHFKNQNLLKEALTHKSAKKSTHN-ERLEFLGDAVLDLIIGEFLYKKFPSSPEGE 65
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+++R++ VN + A++A LG+ +YL + + N D
Sbjct: 66 LSKMRASMVNEKAFAKIARYLGIGEYL-----------------FISHSEEQNHGRDKDS 108
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
+L++ E+ IGA++++ IV K+ E+L P I + L T L E+ Q
Sbjct: 109 ILSNAFEAIIGAIYLESGLEKVQKIVLKIL-EILYPKIDIQHLFYDHKTSLQELTQ 163
>gi|83319588|ref|YP_424465.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|123535692|sp|Q2SRZ8.1|RNC_MYCCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83283474|gb|ABC01406.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
27343]
Length = 232
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 33/235 (14%)
Query: 77 RFNNKNLLEEAFTDPS-CPERF--FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+ N++ + +EA T S ER +SY+RLE++GD++L + ++K FF Y L G LTR
Sbjct: 13 KINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFFHYSKLGEGELTR 72
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LRS+ V E L+R+A + L + +R L + G + +LA
Sbjct: 73 LRSSTVREESLSRIAKDINLGQLIRLGHG----------------ELMTKG-YEKQSILA 115
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP--VTELYEVCQKNK---L 248
DI E+ AV+ID N ++W + + L K M P + +EL E+ Q K L
Sbjct: 116 DIFEALTAAVYIDQNEDGLLIW-LEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDL 174
Query: 249 KVK------FVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
K FV+ K + ++ Q G G K+E N AA D L+ +++
Sbjct: 175 KYIIENEEFFVNENKTLYTVSVNLDGQKFGVGKGYSKQEAEQN-AASDCLSKLKK 228
>gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
Length = 235
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 123/255 (48%), Gaps = 43/255 (16%)
Query: 62 LPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYE--------RLEYVGDSVLNL 113
+P N + +E +G + + +LL EA T S FSYE RLE++GD+VL +
Sbjct: 2 VPFTNLAEFQEGIGLFWRDPDLLLEALTHSS-----FSYEHPGHRHNQRLEFLGDAVLEI 56
Query: 114 LLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE 173
++++ + P+ P G LT++R+A V LA VA ++ L YLR + E++
Sbjct: 57 VVSEHLYRRLPDAPEGDLTKIRAAVVCEPALAHVAREMNLGTYLRMGRG---EEL----- 108
Query: 174 AILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+G + P VLAD +E+ +GA+++D +++ + L+P+IS
Sbjct: 109 ---------SGGRERPSVLADALEALLGALYLD--QGLEVARWFALQSLEPIISATLAGK 157
Query: 234 HPV---TELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIA 283
T L E+ QK + + KE H + ++LGRG KKE A
Sbjct: 158 GEADYKTRLQELLQKRSPEPLRYVIIKEEGPDHNKLFTAGVVYRGKVLGRGTGRTKKE-A 216
Query: 284 HNRAAKDALNNIERL 298
AA++AL + ER+
Sbjct: 217 EQHAAREALVSFERV 231
>gi|297588527|ref|ZP_06947170.1| ribonuclease III [Finegoldia magna ATCC 53516]
gi|297573900|gb|EFH92621.1| ribonuclease III [Finegoldia magna ATCC 53516]
Length = 238
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 120/251 (47%), Gaps = 45/251 (17%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLY-- 123
EE L YRF + NLL AF S SY ERLE++GDSVL+L+++ FLY
Sbjct: 13 EEKLDYRFTDINLLNLAFFHSSYGNENKSYKDISNERLEFLGDSVLDLIVSD---FLYNS 69
Query: 124 -PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
+L G++T++RS V + + +A L L KYL ++ +
Sbjct: 70 KSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYL-----------------MMGHGEFI 112
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELY 240
+G + P VLAD E+ GA+++D S+ IV FK L I ++ T L
Sbjct: 113 SGGSEKPSVLADTFEAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQ 172
Query: 241 EVCQKN---KLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKD 290
E QKN KLK K V KE H ++ + ++G G + K+ A AA++
Sbjct: 173 ENNQKNSRDKLKYKIV---KEEGPDHDKKFYVDVYEGNLVIGSG-FGSSKKHAEQDAARN 228
Query: 291 ALNNIERLLNE 301
AL + R++NE
Sbjct: 229 ALIKL-RVINE 238
>gi|331701485|ref|YP_004398444.1| ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
gi|329128828|gb|AEB73381.1| Ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
Length = 236
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 36/238 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
G ++++LL+EAFT S E YERLE++GD+VL L+++ F YP +P
Sbjct: 13 FGIHIDDQDLLDEAFTQASYVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIFKRYPKMPQ 72
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LTRLR+A VN + + A + ++Y+R K EE+ G D
Sbjct: 73 GRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKG--EEKA---------------GARDR 115
Query: 189 PKVLADIVESTIGAVFIDCNSS--IDIVWKV-FKELLKPMISPETLKTHPVTELYEVCQK 245
+L DI ES +G +++D + V KV F +L + M + H TEL E+ Q
Sbjct: 116 DSLLCDIFESFVGCLYLDQGQAEVTRFVTKVIFPKLDEGMFAE--FFDHK-TELQELAQA 172
Query: 246 NK---LKVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ + + VD + S ++ I+ +L G G KK A +AA+ AL +
Sbjct: 173 DGPVAIDYELVDEYGPDNDRSFKVNVSIDGKLYGVGIGHSKKG-AEQKAAQQALEQFD 229
>gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
gi|226741373|sp|B4U7T8.1|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
Length = 232
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
EE +GYRF +KNL+++AFT S + +YE LE++GD+++N + +PN G
Sbjct: 8 EEKIGYRFKDKNLVKKAFTHISFSKSSENYEVLEFLGDALVNFMTVNILVEAFPNKKEGE 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L++L+S ++ E LA +A L KY+ +K E+++ G P
Sbjct: 68 LSQLKSFLISEEFLASLAKSLNFEKYILISKG---EELK--------------GSNKNPS 110
Query: 191 VLADIVESTIGAVFI----DCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK- 245
+L D+ E+ A++I DC + + FK + M++ +LK T L E+ QK
Sbjct: 111 ILCDVFEAFWAAIYIDSGYDCKLTKSLFEHHFKSQILEMVNSNSLKQDYKTALQEITQKK 170
Query: 246 -------NKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
N + V+ + K T +F + + G+G K+ A AAK+ L I+
Sbjct: 171 WKERPIYNVISVEGPEHRKTFTVECLFKDLRTTGKG---NSKKYAEQEAAKNMLQIIQD- 226
Query: 299 LNEKR 303
NEK+
Sbjct: 227 -NEKK 230
>gi|418559245|ref|ZP_13123791.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21252]
gi|418993852|ref|ZP_13541488.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG290]
gi|371975536|gb|EHO92830.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21252]
gi|377745902|gb|EHT69877.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG290]
Length = 243
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 34/239 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ + N +L ++AF+ S R ERLE++GD+VL L +++ F +PNLP
Sbjct: 24 LGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+GL++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIGLNEMI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYE-VCQK 245
P +++D E+ IGA+++D +DIVWK ++++ P + L T+ E V Q+
Sbjct: 127 PSLVSDAFEAFIGALYLD--QGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
NK V + + +E A H + ++ + + G KKE + RAA+ A ++++
Sbjct: 185 NKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKE-SEQRAAESAYKQLKQI 242
>gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
Length = 233
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 28/201 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E LGY F N LL+ A T R FS ER EY+GD++L +++ + YP P
Sbjct: 13 EHALGYSFQNPELLQRALT-----HRSFSADHNERFEYLGDALLETVISVALYRRYPESP 67
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTRLR+A V + LA +A +L L +YLR L+ +G
Sbjct: 68 EGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELK-----------------SGGKR 110
Query: 188 APKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+LAD VE+ I AV++D + I +F + + E LK P T L E Q
Sbjct: 111 RESILADAVEAIIAAVYLDSDFYRCEQITLALFAPAIAALPDVEALKD-PKTRLQEYLQS 169
Query: 246 NKLKVKFVDLWKESTAFHIFI 266
L + +L +E H I
Sbjct: 170 RDLPLPVYELVEEKGPEHAKI 190
>gi|328766179|gb|EGF76236.1| hypothetical protein BATDEDRAFT_28693 [Batrachochytrium
dendrobatidis JAM81]
Length = 334
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 38/222 (17%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
++RLE++GD+VL+ L+ + + + P L PG L++LR+ V + LA V+I++GL KY+RH
Sbjct: 15 FQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVKYIRH 74
Query: 160 NKPLLEEQIREFSEAILDY---------PLHSNGLV------------DAPKVLADIVES 198
+E I F+ + Y P+ ++ APK D+ ES
Sbjct: 75 TDMTMEAAIGRFAAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAPKTAGDVYES 134
Query: 199 TIGAVFIDCNSSIDIVWKVFK-ELLKP-------MISPETL-KTHPVTEL----YEVCQK 245
+GAVF+D I V +F ++ P + E++ +PV EL Y + +
Sbjct: 135 MLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELRTLSYSLFKC 194
Query: 246 NKLKVKF-VDLWKESTA---FHIFIEDQLLGRGAYAPKKEIA 283
K+ + L +TA +H + Q LG G KK A
Sbjct: 195 VKIDYTYEYGLHGGTTATITYHNMVLAQCLGTGQRDAKKAAA 236
>gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4]
gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4]
Length = 235
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 43/236 (18%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYE--------RLEYVGDSVLNLLLTKEQFFLYPN 125
LG + + LL A T PS ++YE RLE++GDSVL+L+++ + +P
Sbjct: 10 LGISWKEEKLLRLALTHPS-----YAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYRTFPE 64
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G LTRLR+A V LARVA +LG+ + L +L +G
Sbjct: 65 KSEGELTRLRAAVVCEASLARVAEELGIGEAL-----------------LLGRGEEKSGG 107
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEV 242
P +LAD E+ +GA+++D +++ LL+P++ ++ TEL E+
Sbjct: 108 RKRPSLLADAFEALLGAIYLD--QGLEVASAFALHLLRPVLQDVLEGRVERDYKTELQEL 165
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
QK + ++ +E H ++ + + LGRG KKE A RAA++A
Sbjct: 166 LQKGSPEKIVYEVLQEEGPDHAKRFLVGVYYQGKCLGRGEGRSKKE-AEQRAAREA 220
>gi|224825223|ref|ZP_03698329.1| Ribonuclease III [Pseudogulbenkiania ferrooxidans 2002]
gi|224602894|gb|EEG09071.1| Ribonuclease III [Pseudogulbenkiania ferrooxidans 2002]
Length = 238
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGYRF LL +A T S + ER E++GDS+LN + + F +P+L G L+R
Sbjct: 17 LGYRFTRPELLRQALTHRSFGSP--NNERFEFIGDSILNYTVARMLFDRFPSLSEGELSR 74
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ VN LA +A+ LGL YL + L+ +G + P +LA
Sbjct: 75 LRANLVNQSSLAEIALGLGLGDYLYLGEGELK-----------------SGGFNRPSILA 117
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVK 251
D +E+T AV D + ++ ++V +++++ + I P T L E Q KL +
Sbjct: 118 DALEATFAAVSFDTDFAAAENVVRRLYEQRV-AAIDPTKHAKDAKTRLQEALQARKLALP 176
Query: 252 FVDLWKESTAFH 263
+ +S H
Sbjct: 177 KYRILSQSGEAH 188
>gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A]
gi|74616659|sp|Q7S8J7.1|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl-1; Includes: RecName:
Full=ATP-dependent helicase dcl-1
gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A]
Length = 1584
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 30/196 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY+F + LL AF P+ P ER SY+RLE++GD++ +++ F +P P
Sbjct: 1263 ERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADP 1322
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF------------SEAI- 175
LT + A V+ + L ++ LG +K + P + + I E+ EAI
Sbjct: 1323 QWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIEEALETAKQEAIN 1382
Query: 176 ---------LDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
DY +H PK L+D+VE+ IGA+F+D +V F + P
Sbjct: 1383 AGKTADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDSEYDYSVVQNFFNMHVLPFF 1442
Query: 227 SPETL-----KTHPVT 237
L HPVT
Sbjct: 1443 EDMHLYDTFANKHPVT 1458
>gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois]
gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois]
Length = 222
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 28/235 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+ +LG F NK LL EA T PS E+ SYERLE++GD+VLNL++ + L+P P G
Sbjct: 7 QSLLGVHFKNKELLVEALTHPSV-EKCPSYERLEFLGDAVLNLVVASMLYDLFPGDPEGR 65
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L++ +S V LA +A ++ L +R L ++G D
Sbjct: 66 LSQRQSVLVCKTALAMLARQMNLGDCIR-----------------LSSSEEASGGRDKTN 108
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
L +++E+ IGA+F+D + + K + EL + ++++ +P + L E+ Q +
Sbjct: 109 NLENVLEALIGAIFLDAGFETVTCFIQKHWYEL---AVQSDSIEPNPKSALQELLQAKGM 165
Query: 249 KVKFVDLWKESTAFHIFI-EDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNEK 302
K ++ S H+ I E ++ G KK A R+ K N R++ E+
Sbjct: 166 KPPVYNVIDRSGPAHLPIFEVEICVDG----KKRRATGRSKKLGEENAARMMLEE 216
>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 236
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 33/240 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E I+G+ FNNK+++ A T S ++ ERLE++GDSVL L++++ F PN
Sbjct: 14 ENIIGHNFNNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLGLVISEYLFQKKPN 73
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G L+ R+ V L++ A + L KYL K E++ E I
Sbjct: 74 LPEGELSVTRAKIVCENSLSQCATDISLGKYLLLGKG---EELSGGREKI---------- 120
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+L+D E+ IGA++ID ++ V K ++++ I + + T+L E+
Sbjct: 121 ----SLLSDAFEALIGALYIDGGFETAKGFVHKYMDKIIRSCIEGKLFYDYK-TQLQELV 175
Query: 244 QKN---KLKVKFVDLW----KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
Q+N ++ D + ++ + I G+G KKE N AAKDALNN++
Sbjct: 176 QQNGEQQISYSVTDQFGPDHNKTFVTEVKINGVTQGQGKGHSKKEAEQN-AAKDALNNLK 234
>gi|451996502|gb|EMD88969.1| hypothetical protein COCHEDRAFT_1143131 [Cochliobolus heterostrophus
C5]
Length = 1426
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 35/186 (18%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP--ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ++G+ FNNK LL EA T P+ F SYER E++GD+VL+ +++K + P LP
Sbjct: 1124 ENLVGHAFNNKALLLEALTHPTFRGLNTFCSYEREEFLGDAVLDYIVSKRLYSHRPELPH 1183
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ--------------------- 167
+ +R+A VN LA + + + + + L E
Sbjct: 1184 YKMHGIRTAMVNASFLAYSMFETTVEEVFTNKETLQPEAHQKALWQFLRFTSHELVTSRN 1243
Query: 168 --IREFSEAILD----------YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVW 215
I+ SEA + +P H+ L D PK L+DIVES IGA++ID + S+ +
Sbjct: 1244 LAIQRHSEARIQIAEALQHDARFPWHALSLTDPPKFLSDIVESMIGALYIDSHGSLPVCE 1303
Query: 216 KVFKEL 221
+ + L
Sbjct: 1304 EFVRRL 1309
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%)
Query: 91 PSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIK 150
PS E +Y+RLE++GD +L + + + +P G LT + V+ LAR A+
Sbjct: 963 PSATEGEENYQRLEFLGDCILKFITSLHLMATHLRMPEGMLTGKKGKLVSNGYLARAALA 1022
Query: 151 LGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
GL ++ + + + + +L + K++AD++ES IGA ++
Sbjct: 1023 KGLDGFILYKRFTGAKWKPRYVSQMLSITNPPTKQERSSKLIADVIESLIGASYV 1077
>gi|32490945|ref|NP_871199.1| hypothetical protein WGLp196 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|30173145|sp|Q8D305.1|RNC_WIGBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|25166151|dbj|BAC24342.1| rnc [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 226
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 29/228 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F+N +L++A T S + + ERLE++GDS+LN +++ + + N+P G L++
Sbjct: 13 MGYLFHNNIILKQALTHRSFSSK--NNERLEFLGDSILNYIISDALYNNFTNIPEGKLSQ 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V LA +A + L YL IL G + +L+
Sbjct: 71 MRSYLVRGNTLAEIAREFCLGDYL-----------------ILGIGEVKTGGKNRDSILS 113
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK-- 249
+ +E+ IG +F+D N + +IV +K L M S + LK P T L E Q NK
Sbjct: 114 NAMEAIIGGIFLDSNINKTHEIVISWYKNRLYSM-SLKNLKKDPKTRLQEYLQGNKFSLP 172
Query: 250 ---VKFVDLWKESTAFHI--FIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+K + + F I FI+D Y + A AAK AL
Sbjct: 173 QYYIKNITGESHNQEFTICCFIDDLKKSVIGYGKTRRKAEQSAAKQAL 220
>gi|347539391|ref|YP_004846816.1| ribonuclease III [Pseudogulbenkiania sp. NH8B]
gi|345642569|dbj|BAK76402.1| ribonuclease III [Pseudogulbenkiania sp. NH8B]
Length = 238
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 22/192 (11%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGYRF LL +A T S + ER E++GDS+LN + + F +P L G L+R
Sbjct: 17 LGYRFTRPELLRQALTHRSFGSP--NNERFEFIGDSILNYTVARMLFDRFPRLSEGELSR 74
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ VN LA +A+ LGL YL L E +++ +G + P +LA
Sbjct: 75 LRANLVNQSSLAEIALGLGLGDYLY----LGEGELK-------------SGGFNRPSILA 117
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVK 251
D +E+T AV D + ++ ++V +++++ + I P T L E Q KL +
Sbjct: 118 DALEATFAAVSFDSDFAAAENVVRRLYEQRV-AAIDPTKHAKDAKTRLQEALQARKLALP 176
Query: 252 FVDLWKESTAFH 263
+ +S H
Sbjct: 177 KYRILSQSGEAH 188
>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
Length = 246
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 44/233 (18%)
Query: 83 LLEEAFTDPSCPERFFSYE--------RLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
LLE A T R ++YE RLE++GD+VL L++T + +P LP G L +
Sbjct: 31 LLERAVT-----HRSYAYENGGLPTNERLEFLGDAVLGLVITDTLYRRFPELPEGQLAKF 85
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
RSA VN LA VA L L ++LR + EE S G + +LAD
Sbjct: 86 RSAVVNMRALAEVARSLRLGEFLRLGRG--EE---------------STGGRNKSSILAD 128
Query: 195 IVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKNKLKVK 251
+E+ IGAV+++ +D + L P+I + T L E+ L V
Sbjct: 129 ALEALIGAVYVEHG--LDGAAEFVHRLFDPLIDRAAALGAGLDWKTSLQELTAAQHLGVP 186
Query: 252 FVDLWKES-------TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
F DL + TA + I ++ G G+ KKE A RAA++A I R
Sbjct: 187 FYDLSERGPDHEKVFTA-EVRIGGRVYGTGSGHSKKE-AEQRAAQEAWLRIRR 237
>gi|390934856|ref|YP_006392361.1| ribonuclease 3 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570357|gb|AFK86762.1| Ribonuclease 3 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 232
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 125/241 (51%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP---ERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPN- 125
E+ +GY FNNK LL+ A T S + F S ERLE++GDSVL++++++ +LY N
Sbjct: 11 EKNIGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISE---YLYKNR 67
Query: 126 --LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
L G L++ R+ V LAR A ++ + KYL + EE
Sbjct: 68 TDLEEGYLSKYRAEIVCEPSLARCAREIEIGKYLNIGRG--EEM---------------T 110
Query: 184 GLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
G + +LAD +E+ I AV++D + + ++V ++F++++ ++S + + T+L E
Sbjct: 111 GGRNRDSILADAMEALIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYK-TKLQE 169
Query: 242 VCQK---NKLKVKFVDLW----KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
V QK ++ + +D + + +F+ + LGRG KKE A AA +AL+
Sbjct: 170 VTQKMGSERVIYRLIDEYGPDHNKMFVIEVFVGENRLGRGKGRSKKE-AEQYAAMEALSK 228
Query: 295 I 295
+
Sbjct: 229 M 229
>gi|121807817|sp|Q2VF19.1|DCL1_CRYPA RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL-1; Includes: RecName:
Full=ATP-dependent helicase DCL-1
gi|77632774|gb|ABB00356.1| dicer-like protein 1 [Cryphonectria parasitica]
Length = 1548
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 38/213 (17%)
Query: 60 ESLP-NANNLDE----EEILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVL 111
+++P NA LD E GY+F + +L AF PS P ++ Y+RLE++GD++
Sbjct: 1236 QTMPANAAELDMAQKIHEATGYQFKHPRVLRSAFRHPSRPYVFDKVPHYQRLEFLGDALF 1295
Query: 112 NLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
++ F + P+ P LT + A V+ + L +A+ LG HK++ H+ + QI E+
Sbjct: 1296 DMACVDYLFHIAPDEGPQWLTEHKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEY 1355
Query: 172 SEAIL----------------------DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNS 209
I DY + + PK + D++E+ +GA+F+D
Sbjct: 1356 VTEITEARRAAEDAAEAAGKPRSAYSRDYWVEAP---QPPKCIPDVLEAYVGAIFVDSKY 1412
Query: 210 SIDIVWKVFKELLKPMISPETL-----KTHPVT 237
+V + F + P + + HPVT
Sbjct: 1413 DYSVVQQFFHAHVLPFFASMRMYDTFANKHPVT 1445
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIK--LGLHKY 156
+YERLE +GDS L + T F L PN R + + L VA L LH+Y
Sbjct: 1082 NYERLELLGDSFLKMATTIAVFTLIPNKDEFDYHCERMVMICNQNLFGVAKSDDLKLHEY 1141
Query: 157 LRHNK-------PLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
+R P+L+ EF + L + A K +AD+ E+ IGA ++
Sbjct: 1142 IRSKSFERGTWYPVLK---LEFGKTHLKTLKQMDEHRLADKSIADVCEALIGAAYM 1194
>gi|416216166|ref|ZP_11623567.1| ribonuclease III [Moraxella catarrhalis 7169]
gi|416230276|ref|ZP_11628342.1| ribonuclease III [Moraxella catarrhalis 46P47B1]
gi|416239621|ref|ZP_11632094.1| ribonuclease III [Moraxella catarrhalis BC1]
gi|416243970|ref|ZP_11634235.1| ribonuclease III [Moraxella catarrhalis BC7]
gi|326561464|gb|EGE11814.1| ribonuclease III [Moraxella catarrhalis 46P47B1]
gi|326562236|gb|EGE12564.1| ribonuclease III [Moraxella catarrhalis 7169]
gi|326567190|gb|EGE17312.1| ribonuclease III [Moraxella catarrhalis BC1]
gi|326568472|gb|EGE18552.1| ribonuclease III [Moraxella catarrhalis BC7]
Length = 262
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 41/244 (16%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
LGY F + +LL A T S P++ SYERLE++GD++L+ ++TK F YP G LT
Sbjct: 39 LGYTFKDVSLLCRALTHRSYDPKK--SYERLEFLGDALLSSIITKALFAQYPKHDEGKLT 96
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
R+R+A V E L ++A L L +YL IL G +L
Sbjct: 97 RMRAALVRQETLVQIADHLELSRYL-----------------ILGVGERKGGGRHRASIL 139
Query: 193 ADIVESTIGAVFID-CNSSID-----IVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
AD VE+ I AV++D NS + +V +K+L++ + + LK + L E+ Q N
Sbjct: 140 ADAVEALIAAVYLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAK-SRLQELLQGN 198
Query: 247 KLKVKFVDLWKE--STAFHIFI---------EDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L + +L + S +F+ D ++ GA + IA + A+ +N +
Sbjct: 199 RLPLPTYELIQTLGSAPNQVFVVRCHCTVVGVDPIIETGA---SRRIAEQKCAERMINQL 255
Query: 296 ERLL 299
+LL
Sbjct: 256 NKLL 259
>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 247
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 128/245 (52%), Gaps = 36/245 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSYE---RLEYVGDSVLNLLLTKEQFFLYPN 125
+++L +F N++LL +AFT S R S E RLE++GD+VL L ++ F YP+
Sbjct: 24 QDLLNIQFENEHLLVQAFTHSSYVNEHRIKSSEDNERLEFLGDAVLELTVSHYLFNNYPS 83
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G LT+LR+A V L A +L +Y+ +L G
Sbjct: 84 MSEGDLTKLRAAIVCEPSLVNFAHQLSFGEYV-----------------LLGKGEELTGG 126
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEV 242
P +LAD+ ES IGA+++D +D V + ++++ P IS E + +H + ++L E+
Sbjct: 127 RARPALLADVFESFIGALYLD--QGLDKVIEFLQKVIYPKIS-EGVFSHVMDYKSQLQEI 183
Query: 243 CQKN-KLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+N + ++++ + ++ A + + + ++LG G KKE A +AAK+AL+ +
Sbjct: 184 VQRNGQGSLEYLIIQEKGPAHNREFVSRVALNGEILGTGVGKSKKE-AEQKAAKEALDEL 242
Query: 296 ERLLN 300
++ N
Sbjct: 243 KKERN 247
>gi|328766772|gb|EGF76825.1| hypothetical protein BATDEDRAFT_28342 [Batrachochytrium
dendrobatidis JAM81]
Length = 460
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 38/222 (17%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
++RLE++GD+VL+ L + + + P L PG L++LR+ V + LA V+I++GL KY+RH
Sbjct: 141 FQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVKYIRH 200
Query: 160 NKPLLEEQIREFSEAILDY---------PLHSNGLV------------DAPKVLADIVES 198
+E I F+ + Y P+ ++ APK D+ ES
Sbjct: 201 TDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAPKTAGDVYES 260
Query: 199 TIGAVFIDCNSSIDIVWKVFK-ELLKP-------MISPETL-KTHPVTEL----YEVCQK 245
+GAVF+D I V +F ++ P + E++ +PV EL Y + +
Sbjct: 261 MLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELRTLSYSLFKC 320
Query: 246 NKLKVKF-VDLWKESTA---FHIFIEDQLLGRGAYAPKKEIA 283
K+ + L +TA +H + Q LG G KK A
Sbjct: 321 VKIDYTYEYGLHGGTTATITYHNMVLAQCLGTGQRDAKKAAA 362
>gi|328769566|gb|EGF79610.1| hypothetical protein BATDEDRAFT_26082 [Batrachochytrium
dendrobatidis JAM81]
Length = 334
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 38/222 (17%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
++RLE++GD+VL+ L + + + P L PG L++LR+ V + LA V+I++GL KY+RH
Sbjct: 15 FQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVKYIRH 74
Query: 160 NKPLLEEQIREFSEAILDY---------PLHSNGLV------------DAPKVLADIVES 198
+E I F+ + Y P+ ++ APK D+ ES
Sbjct: 75 TDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAPKTAGDVYES 134
Query: 199 TIGAVFIDCNSSIDIVWKVFK-ELLKP-------MISPETL-KTHPVTEL----YEVCQK 245
+GAVF+D I V +F ++ P + E++ +PV EL Y + +
Sbjct: 135 MLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELRTLSYSLFKC 194
Query: 246 NKLKVKF-VDLWKESTA---FHIFIEDQLLGRGAYAPKKEIA 283
K+ + L +TA +H + Q LG G KK A
Sbjct: 195 VKIDYTYEYGLHGGTTATITYHNMVLAQCLGTGQRDAKKAAA 236
>gi|328766294|gb|EGF76349.1| hypothetical protein BATDEDRAFT_92769 [Batrachochytrium
dendrobatidis JAM81]
Length = 334
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 38/222 (17%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
++RLE++GD+VL+ L + + + P L PG L++LR+ V + LA V+I++GL KY+RH
Sbjct: 15 FQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVKYIRH 74
Query: 160 NKPLLEEQIREFSEAILDY---------PLHSNGLV------------DAPKVLADIVES 198
+E I F+ + Y P+ ++ APK D+ ES
Sbjct: 75 TDMTMEAAIGRFATWVQGYLASESSTSLPISTSATQIASARMFWNKGNTAPKTAGDVYES 134
Query: 199 TIGAVFIDCNSSIDIVWKVFK-ELLKP-------MISPETL-KTHPVTEL----YEVCQK 245
+GAVF+D I V +F ++ P + E++ +PV EL Y + +
Sbjct: 135 MLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELRTLSYSLFKC 194
Query: 246 NKLKVKF-VDLWKESTA---FHIFIEDQLLGRGAYAPKKEIA 283
K+ + L +TA +H + Q LG G KK A
Sbjct: 195 VKIDYTYEYGLHGGTTATITYHNMVLAQCLGTGQRDAKKAAA 236
>gi|375337647|ref|ZP_09778991.1| ribonuclease III [Succinivibrionaceae bacterium WG-1]
Length = 237
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 32/235 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+ LGY +N+ L++A T S ERLE++GDS+L +L+ + + +P +P G
Sbjct: 13 EKALGYEYNDLQHLQKALTHRSYGAS--HNERLEFLGDSILGMLMAEHLYHQFPEVPEGD 70
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LTR+RS V LA +A L L YL L+ +G
Sbjct: 71 LTRMRSTLVREPTLAEIARDLKLSDYLLMGPGELK-----------------SGGYRRDS 113
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNK 247
+LAD VE+ +G++++D N++I+IV V L I P + P T L E Q
Sbjct: 114 ILADAVEAILGSIYLDSNNNIEIVRTVLMSLFDTRLKEIHPGFEQKDPKTNLQEYLQARH 173
Query: 248 LKVKFVDLWKESTAFH----------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+ + K + H F D +G G K E A DAL
Sbjct: 174 APLPVYTVTKITGESHNQQFTVKLEASFNRDPFIGYGTTRRKAEQNAALKALDAL 228
>gi|400595165|gb|EJP62972.1| RNase3 domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 1465
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 15/170 (8%)
Query: 73 ILGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
I+GYRF + LL AFT S E SY+ LE++GD++L++++ F P+ P +L
Sbjct: 1185 IIGYRFRSPLLLRSAFTHASYKAEEIPSYQTLEFLGDALLDMVIVDHLFRTRPHAGPQAL 1244
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI--------------LD 177
T + + + + L + ++LGLH+ L + ++ F E +
Sbjct: 1245 TESKMSVCSNQFLGCLCVELGLHRELLTADAAVPGHVKAFEEKVAYLREQAAGTGASAAT 1304
Query: 178 YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS 227
+ PK LAD+VE+ IGA+F+D + +V F+ ++P I
Sbjct: 1305 NKAYWTLATRPPKALADVVEALIGAMFVDARYDLSVVANFFQRFVQPHIG 1354
>gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102]
Length = 1524
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 17/191 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP--ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E +GY+F + LL AF PS P +Y+RLE++GD++L++ + F YP P
Sbjct: 1249 EGSIGYKFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFRRYPLADP 1308
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS-NGLVD 187
LT + A + + + ++LGLH+++ + I F E I L + +G++
Sbjct: 1309 QWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSMMGHIAGFVEQIEKAKLQTEDGVLQ 1368
Query: 188 ---------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KT 233
PK L+DI+E+ +GA++ D + V F + + P TL
Sbjct: 1369 LDFWLNTEHPPKALSDILEAVVGAMYEDSKYDYNSVRDFFTKFIAPHFQDMTLYDTYAAG 1428
Query: 234 HPVTELYEVCQ 244
HPVT+L ++ Q
Sbjct: 1429 HPVTQLTKLMQ 1439
>gi|421780696|ref|ZP_16217184.1| ribonuclease III [Moraxella catarrhalis RH4]
gi|407812384|gb|EKF83170.1| ribonuclease III [Moraxella catarrhalis RH4]
Length = 263
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 41/244 (16%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
LGY F + +LL A T S P++ SYERLE++GD++L+ ++TK F YP G LT
Sbjct: 40 LGYTFKDVSLLCRALTHRSYDPKK--SYERLEFLGDALLSSIITKALFAQYPKHDEGKLT 97
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
R+R+A V E L ++A L L +YL IL G +L
Sbjct: 98 RMRAALVRQETLVQIADHLELSRYL-----------------ILGVGERKGGGRHRASIL 140
Query: 193 ADIVESTIGAVFID-CNSSID-----IVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
AD VE+ I AV++D NS + +V +K+L++ + + LK + L E+ Q N
Sbjct: 141 ADAVEALIAAVYLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAK-SRLQELLQGN 199
Query: 247 KLKVKFVDLWKE--STAFHIFI---------EDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L + +L + S +F+ D ++ GA + IA + A+ +N +
Sbjct: 200 RLPLPTYELIQTLGSAPNQVFVVRCHCTVVGVDPIIETGA---SRRIAEQKCAERMINQL 256
Query: 296 ERLL 299
+LL
Sbjct: 257 NKLL 260
>gi|328774462|gb|EGF84499.1| hypothetical protein BATDEDRAFT_22607 [Batrachochytrium
dendrobatidis JAM81]
Length = 334
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 38/222 (17%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
++RLE++GD+VL+ L + + + P L PG L++LR+ V + LA V+I++GL KY+RH
Sbjct: 15 FQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVKYIRH 74
Query: 160 NKPLLEEQIREFSEAILDY---------PLHSNGLV------------DAPKVLADIVES 198
+E I F+ + Y P+ ++ APK D+ ES
Sbjct: 75 TDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAPKTAGDVYES 134
Query: 199 TIGAVFIDCNSSIDIVWKVFK-ELLKP-------MISPETL-KTHPVTEL----YEVCQK 245
+GAVF+D I V +F ++ P + E++ +PV EL Y + +
Sbjct: 135 MLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELRTLSYSLFKC 194
Query: 246 NKLKVKF-VDLWKESTA---FHIFIEDQLLGRGAYAPKKEIA 283
K+ + L +TA +H + Q LG G KK A
Sbjct: 195 VKIDYTYEYGLHGGTTATITYHNMVLAQCLGTGQRDAKKAAA 236
>gi|416249370|ref|ZP_11636546.1| ribonuclease III [Moraxella catarrhalis CO72]
gi|326576294|gb|EGE26209.1| ribonuclease III [Moraxella catarrhalis CO72]
Length = 262
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 41/244 (16%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
LGY F + +LL A T S P++ SYERLE++GD++L+ ++TK F YP G LT
Sbjct: 39 LGYTFKDVSLLCRALTHRSYDPKK--SYERLEFLGDALLSSIITKALFAQYPKHDEGKLT 96
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
R+R+A V E L ++A L L +YL IL G +L
Sbjct: 97 RMRAALVRQETLVQIADHLELSRYL-----------------ILGVGERKGGGRHRASIL 139
Query: 193 ADIVESTIGAVFID-CNSSID-----IVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
AD VE+ I AV++D NS + +V +K+L++ + + LK + L E+ Q N
Sbjct: 140 ADAVEALIAAVYLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAK-SRLQELLQGN 198
Query: 247 KLKVKFVDLWKE--STAFHIFI---------EDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L + +L + S +F+ D ++ GA + IA + A+ +N +
Sbjct: 199 RLPLPTYELIQTLGSAPNQVFVVRCHCTVVGVDPIIETGA---SRRIAEQKCAERMINQL 255
Query: 296 ERLL 299
+LL
Sbjct: 256 NKLL 259
>gi|15603994|ref|NP_220509.1| ribonuclease III [Rickettsia prowazekii str. Madrid E]
gi|383486964|ref|YP_005404644.1| ribonuclease III [Rickettsia prowazekii str. GvV257]
gi|383487540|ref|YP_005405219.1| ribonuclease III [Rickettsia prowazekii str. Chernikova]
gi|383488386|ref|YP_005406064.1| ribonuclease III [Rickettsia prowazekii str. Katsinyian]
gi|383489229|ref|YP_005406906.1| ribonuclease III [Rickettsia prowazekii str. Dachau]
gi|383499364|ref|YP_005412725.1| ribonuclease III [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500204|ref|YP_005413564.1| ribonuclease III [Rickettsia prowazekii str. RpGvF24]
gi|6226018|sp|Q9ZE31.1|RNC_RICPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|3860685|emb|CAA14586.1| RIBONUCLEASE III (rnc) [Rickettsia prowazekii str. Madrid E]
gi|380757329|gb|AFE52566.1| ribonuclease III [Rickettsia prowazekii str. GvV257]
gi|380757901|gb|AFE53137.1| ribonuclease III [Rickettsia prowazekii str. RpGvF24]
gi|380760419|gb|AFE48941.1| ribonuclease III [Rickettsia prowazekii str. Chernikova]
gi|380761265|gb|AFE49786.1| ribonuclease III [Rickettsia prowazekii str. Katsinyian]
gi|380762110|gb|AFE50630.1| ribonuclease III [Rickettsia prowazekii str. BuV67-CWPP]
gi|380762952|gb|AFE51471.1| ribonuclease III [Rickettsia prowazekii str. Dachau]
Length = 225
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E +LGY F NK LL EA + PS + YERLE++GD+VLNLL+T+ F + N
Sbjct: 8 ETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFKNFEN 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G+L ++RS V E + V KL L Y+ I+ + G
Sbjct: 68 YKEGNLAKIRSYLVCKETICIVGTKLALKDYI-----------------IMTHGEEVAGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PVTELYEVCQ 244
D P + + E+ I A+++D N I+I + ++L + + L + P T L E Q
Sbjct: 111 RDNPNNIENATEALIAAIYLDSN--IEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQ 168
Query: 245 KNKLKVKFVDLWKESTAFH 263
N + L K A H
Sbjct: 169 ANSHHLPIYRLIKREGAAH 187
>gi|254428849|ref|ZP_05042556.1| ribonuclease III [Alcanivorax sp. DG881]
gi|196195018|gb|EDX89977.1| ribonuclease III [Alcanivorax sp. DG881]
Length = 228
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+F + +LLE A T S R +YERLE++GD+ L +++ F +P G LTR
Sbjct: 12 LGYQFQDISLLELALTHRSVS-RHRNYERLEFLGDAQLGQIISVALFEQFPEAAEGQLTR 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R++ V + LA VA +LGL +YL +L +G +LA
Sbjct: 71 MRASLVRGQTLALVARELGLGEYL-----------------VLGGGELKSGGFRRDSILA 113
Query: 194 DIVESTIGAVFIDCNSS--IDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D +ES IGA+ +D S ++V F L ISP++ + T L E Q K ++
Sbjct: 114 DALESIIGAMLLDGGESRCREVVLCWFAPRLDA-ISPQSAQKDAKTRLQEWLQARKFEL 171
>gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243]
gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243]
gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
Length = 281
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 31/236 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+EILGYRF ++ LL A T PS E +SYERLE++GDS+L ++ F + +L
Sbjct: 15 QEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDRFHDLD 74
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTR++ A V+ L+ VA +LG + R LHS
Sbjct: 75 EGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRR---------GLHS----- 120
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQK 245
L ++ E+ + A+F+D I+ + L P +S + + +P + L E Q+
Sbjct: 121 ---ALENVYEAVVAALFLDGG--IEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQE 175
Query: 246 NKL--KVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ + K V+ + +F Q L RG KKE A ++AAK L +
Sbjct: 176 DGITPTYKLVETQGPPHDRTFVAQVFAGSQGLARGTGRTKKE-AESQAAKSTLARL 230
>gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429]
gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429]
Length = 231
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 19/158 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE--RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ++GYRF NK LL A T S + SYERLE++GDSV+++L+ + Y L
Sbjct: 10 EHVIGYRFRNKELLFTALTHTSYANENKKQSYERLEFLGDSVIDILVCTILYEQYQTLNE 69
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G++ +++SA + + L +A K L KY+ K S G +
Sbjct: 70 GTMAQIKSAVTSEDILFEIAKKFNLGKYILLGKG----------------ERRSRG-SEK 112
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
+LAD+VES I A+++D N ++ ++ +F ++ K I
Sbjct: 113 KSILADVVESLIAAIYLDSNKNLKLIENLFSKIFKDYI 150
>gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 223
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 28/185 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E LGY F ++ LL+ A T R +S ERLE++GD++LN ++ + F +P LP
Sbjct: 7 ERGLGYTFRDRALLQTALT-----HRSYSSPHNERLEFLGDAILNAVIARSLFERFPTLP 61
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G L+RLR+ V + L + A+ L L +LR L +G
Sbjct: 62 EGDLSRLRAQLVRQDGLHQQALALSLGDFLR-----------------LGEGEQKSGGQQ 104
Query: 188 APKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
P +LAD +E+ GA+++D ++ +++ ++++ +LK +I + K T L E Q
Sbjct: 105 RPSILADGLEALFGALWLDAGFEAAGEVINRLYESMLKQLIPGQGTK-DAKTRLQEYLQG 163
Query: 246 NKLKV 250
+L +
Sbjct: 164 RRLAL 168
>gi|313888515|ref|ZP_07822182.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845544|gb|EFR32938.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 231
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 40/248 (16%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLL 115
+ N NL E L Y F +K LLE A T S +++ S ERLE++GD+VL L++
Sbjct: 2 TFSNLKNL--ERKLNYDFKDKGLLETALTHSSYVNENKMKQYESNERLEFLGDAVLGLVI 59
Query: 116 TKEQFFLYPNLPP---GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS 172
+ + Y N P GSLT++R+ +VN + L +A L L ++R K
Sbjct: 60 GE---YFYKNFPKDLEGSLTKMRAESVNEKVLFFIAKGLELGDFIRFGK----------- 105
Query: 173 EAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPET 230
NG AD +E+ IGA+F+D N++ IV +F E LK + +
Sbjct: 106 ------GEKKNGGSKRESTSADALEALIGAIFLDSNFNNAKKIVLNLFDEFLKE-DAYKL 158
Query: 231 LKTHPVTELYEVCQKNKLKVKFVDLWKES-----TAF-HIFIEDQLLGRGAYAPKKEIAH 284
T L E Q++ K ++ + +E T F +++++ L G+G+ KKE +
Sbjct: 159 FNVDFKTMLQEEVQRSGQKAEYKLVREEGPDNDKTFFTELYLDEVLAGKGSGKTKKE-SQ 217
Query: 285 NRAAKDAL 292
AA++AL
Sbjct: 218 QEAAREAL 225
>gi|418922815|ref|ZP_13476732.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
gi|377736138|gb|EHT60168.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
Length = 243
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 34/239 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ + N +L ++AF+ S R ERLE++GD+VL L +++ F +PNLP
Sbjct: 24 LGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+G ++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIGFNEMI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYE-VCQK 245
P +++D E+ IGA+++D +DIVWK ++++ P + L T+ E V Q+
Sbjct: 127 PSLISDAFEAFIGALYLD--QGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
NK V + + +E A H + ++ + + G KKE + RAA+ A ++++
Sbjct: 185 NKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKE-SEQRAAESAYKQLKQI 242
>gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca]
Length = 1917
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 19/241 (7%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1672 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1731
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHN-KPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT LRSA VN A +A + L H ++ Q+ + +D L + +
Sbjct: 1732 GVLTDLRSALVNNTIFASLAYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDE 1791
Query: 188 -------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTE 238
PK + DI ES GA+++D S+++VW+V+ +++P+I + PV E
Sbjct: 1792 EKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRE 1851
Query: 239 LYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAAKDALNNI 295
L E+ KF + + + +++G+G + IA + AA+ AL ++
Sbjct: 1852 LLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSL 1907
Query: 296 E 296
+
Sbjct: 1908 K 1908
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1312 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1367
>gi|336470988|gb|EGO59149.1| hypothetical protein NEUTE1DRAFT_60268 [Neurospora tetrasperma FGSC
2508]
gi|350292065|gb|EGZ73260.1| hypothetical protein NEUTE2DRAFT_107618 [Neurospora tetrasperma FGSC
2509]
Length = 1583
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F + LL AF P+ P ER SY+RLE++GD++ +++ F +P P
Sbjct: 1262 ERLGYSFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADP 1321
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----------------- 171
LT + A V+ + L ++ LG +K + P + + I E+
Sbjct: 1322 QWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVAEIEEALEAAKEEAIK 1381
Query: 172 -----SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
E DY +H PK L+D+VE+ IGA+F+D +V F + P
Sbjct: 1382 AGTTADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDSEYDYSVVQNFFNTHVLPFF 1441
Query: 227 SPETL-----KTHPVT 237
L HPVT
Sbjct: 1442 EDMHLYDTFANKHPVT 1457
>gi|321457594|gb|EFX68677.1| hypothetical protein DAPPUDRAFT_329838 [Daphnia pulex]
Length = 291
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E IL Y N+K +L EAFT + + +Y+RLE +GD+ L L F G
Sbjct: 88 ENILHYTSNDKEVLLEAFTHGNS-MKSQNYQRLELIGDAALGFLSALNFFIKSLTHTSGD 146
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI---------LDYPLH 181
+T+LRSA V + A K G H+++++ P+L +Q+ +F E + + L
Sbjct: 147 ITKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFTFAPFERELA 206
Query: 182 SNGLVDA-----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM 225
+NG + A P LAD+ E+ GA+ ID N S + + +V+ + P+
Sbjct: 207 ANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPV 255
>gi|376261061|ref|YP_005147781.1| ribonuclease III [Clostridium sp. BNL1100]
gi|373945055|gb|AEY65976.1| ribonuclease III [Clostridium sp. BNL1100]
Length = 236
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 33/240 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E I+G+ F NK+++ A T S ++ ERLE++GDSVL L +++ F PN
Sbjct: 14 ENIIGHNFKNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLGLTISEYLFQKRPN 73
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G L+ R+ V L++ A + L KYL K E++ E I
Sbjct: 74 LPEGELSVTRAKIVCENSLSQCATDISLGKYLLLGKG---EELSGGREKI---------- 120
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+L+D E+ IGA++ID ++ V+K +++K I + + T+L E+
Sbjct: 121 ----SLLSDAFEALIGALYIDGGFETAKAFVYKYMDKIIKSCIEGKLFYDYK-TQLQELV 175
Query: 244 QKN---KLKVKFVDLW----KESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
Q+N ++ D + ++ + I G+G KKE N AAKDALNN++
Sbjct: 176 QQNGEQQISYSVTDQFGPDHNKTFITEVKINGATQGQGKGHSKKEAEQN-AAKDALNNLK 234
>gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta]
gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta]
Length = 1729
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 56/238 (23%)
Query: 66 NNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLY 123
N+ E LGY F ++ L +A T PS P + Y+ LE++GD++L+ L++ F
Sbjct: 1440 NHYHLENNLGYTFKDRGYLLQALTHPSYPTNRITGCYQELEFIGDAILDFLISVYIFENN 1499
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS----------- 172
N+ PG+LT LRSA VN LA + ++ LH ++ +L E I +F
Sbjct: 1500 TNMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAMLAESISKFVHFQESQRHRVT 1559
Query: 173 -------------------EAILDYPLHSNGL---------------------VDAPKVL 192
+ LD +N L VD PK L
Sbjct: 1560 NHVRILLEEADVQPTSLDLDDYLDMTELNNALKSISQEEQNDQPRGEFNMSTNVDVPKAL 1619
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYEVCQKNKL 248
D++E+ I A+++DC + W+V L KP + + +P+ +L E N L
Sbjct: 1620 GDVLEALIAAIYLDCR-DLQRTWEVIFNLFKPELQEFARNVPINPIRQLMEHRHANPL 1676
>gi|157803302|ref|YP_001491851.1| ribonuclease III [Rickettsia canadensis str. McKiel]
gi|379022513|ref|YP_005299174.1| ribonuclease III [Rickettsia canadensis str. CA410]
gi|189043341|sp|A8EXI3.1|RNC_RICCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157784565|gb|ABV73066.1| ribonuclease III [Rickettsia canadensis str. McKiel]
gi|376323451|gb|AFB20692.1| ribonuclease III [Rickettsia canadensis str. CA410]
Length = 227
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 25/199 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E++LGY F NK LL EA + PS + YERLE++GD+VLNL++TK F + +
Sbjct: 8 EKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYERLEFLGDAVLNLVITKILFSNFAS 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G+L ++RS V E + V KL L Y+ I+ Y G
Sbjct: 68 YNEGNLAKIRSYLVCKETICMVGAKLALKDYI-----------------IMTYGEEVAGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PVTELYEVCQ 244
D P + + E+ I A+++D N I+ + +L I + L + P T L E Q
Sbjct: 111 RDNPNNIENATEALIAAIYLDSN--IETTHNIIGQLWAEFIKVQNLTDYDPKTALQEWAQ 168
Query: 245 KNKLKVKFVDLWKESTAFH 263
+ + L K A H
Sbjct: 169 ASDHHLPIYCLIKREGAAH 187
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 34/242 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC---PERFF---SYERLEYVGDSVLNLLLTKEQFFLYP 124
E+ L YRF +LLEEA T S R + ERLE++GD+VL L++ + YP
Sbjct: 11 EDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTQNNERLEFLGDTVLGLVVAEYLMVTYP 70
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
P G L++ + V+ LA V+ LG+ +L K Q RE S
Sbjct: 71 KYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKS------------ 118
Query: 185 LVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+LAD +E+ I A+++D +++ + F+ +++ + ++++ + T+L E
Sbjct: 119 -----SLLADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQDYK-TDLQEY 172
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
CQ+ + + + H + I ++ G G+ KKE A +AAKDAL+ +
Sbjct: 173 CQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKE-AEQKAAKDALSRL 231
Query: 296 ER 297
R
Sbjct: 232 AR 233
>gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
gi|379728091|ref|YP_005320276.1| ribonuclease III [Melissococcus plutonius DAT561]
gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
gi|376318994|dbj|BAL62781.1| ribonuclease III [Melissococcus plutonius DAT561]
Length = 230
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPN 125
+E G F++ NLLE+AFT S R+ ER+E++GD+VL L++++ + Y N
Sbjct: 10 KERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERIEFLGDAVLELIISQYLYQKYQN 69
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G LT++R+A V + LA+ A + +Y+ +L ++G
Sbjct: 70 LPEGKLTKMRAAIVREDSLAKFAKECQFDQYI-----------------LLGNGEENSGG 112
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEV 242
+ +L D+ E+ +GA+++D I+ V E++ P I +H V T L EV
Sbjct: 113 RERSALLCDLFEAFLGALYLD--QGIETVKYFISEIIFPKIEEGNF-SHEVDHKTHLQEV 169
Query: 243 CQ-KNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
Q K + + + L E H I+ +++L+GRG + K++A AA+ AL
Sbjct: 170 LQHKGDVNIDY-RLVDEKGPAHDRIFYTEIYADEKLIGRG-HGRSKKLAEQDAAERALKE 227
Query: 295 I 295
I
Sbjct: 228 I 228
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 34/242 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC---PERFF---SYERLEYVGDSVLNLLLTKEQFFLYP 124
E+ L YRF +LLEEA T S R + ERLE++GD+VL L++ + YP
Sbjct: 11 EDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYLMVTYP 70
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
P G L++ + V+ LA V+ LG+ +L K Q RE S
Sbjct: 71 KYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKS------------ 118
Query: 185 LVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+LAD +E+ I A+++D +++ + F+ +++ + ++++ + T+L E
Sbjct: 119 -----SLLADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQDYK-TDLQEY 172
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
CQ+ + + + H + I ++ G G+ KKE A +AAKDAL+ +
Sbjct: 173 CQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKE-AEQKAAKDALSRL 231
Query: 296 ER 297
R
Sbjct: 232 AR 233
>gi|347549202|ref|YP_004855530.1| putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982273|emb|CBW86267.1| Putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 230
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP----ETLKTHPVTELYE 241
P +LAD+ ES IGA+++D + I V + ++ P I ET+ T+L E
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIAKVVTFLERIIFPKIDAGAYLETVDYK--TQLQE 166
Query: 242 VCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
+ Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N
Sbjct: 167 IVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQ 225
Query: 295 I 295
+
Sbjct: 226 L 226
>gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens]
Length = 358
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 20/172 (11%)
Query: 65 ANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQF 120
NNL+ E+++GY F NK + A T S + E +LE++GD++L ++ + F
Sbjct: 185 TNNLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFF 244
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI----- 175
+P+ P L + A VN + LA + I +G+ KY+ P L I +F++ I
Sbjct: 245 NSHPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYM 304
Query: 176 LDYPLHSNGLVDA-----------PKVLADIVESTIGAVFIDCNSSIDIVWK 216
+D ++ N +A PK ++D+VE+ IGA++ID SI V K
Sbjct: 305 IDDEMNYNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIAEVTK 356
>gi|327399771|ref|YP_004340640.1| ribonuclease 3 [Hippea maritima DSM 10411]
gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
Length = 234
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 41/251 (16%)
Query: 63 PNANNLDEEEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFF 121
+ + ++ EE LGY F NK LL+ A T S ++ S ERLE++GD+VL L++T+
Sbjct: 6 TDTSKMEFEERLGYTFKNKELLKRALTHRSYVKDKAKSNERLEFLGDAVLELVVTEFLIN 65
Query: 122 LYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL-DYPL 180
Y N+ G L+++R+A+VNT+ L+++A KL E S+ IL
Sbjct: 66 NYKNIDEGKLSKIRAASVNTKTLSKLARKL------------------ELSDQILVGRSE 107
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-------LKT 233
G+ + +L D E+ +GA+++D +D + + +LK I KT
Sbjct: 108 KKEGITNNDSILEDAFEAIVGAIYLD--GGLDKARRFVEHMLKDTIIAIVENGIIFDYKT 165
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNR 286
H L E+ QK + + KE H + I+ G G KK+ A
Sbjct: 166 H----LQEITQKQFGCLPEYVIVKEDGQEHNKTFYCDVMIKGVKYGFGIGKSKKD-AEKN 220
Query: 287 AAKDALNNIER 297
AAK+A+ +E+
Sbjct: 221 AAKEAVKKLEQ 231
>gi|402836893|ref|ZP_10885424.1| ribonuclease III [Mogibacterium sp. CM50]
gi|402269909|gb|EJU19178.1| ribonuclease III [Mogibacterium sp. CM50]
Length = 227
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 34/237 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E LGY+F N+ LLE A T S F+ ERLE++GD+ LN ++ K+ F + P
Sbjct: 5 ENKLGYKFKNEKLLETALTHSSYASEHGKHYEFNNERLEFLGDAFLNAIIGKKMFAVMPE 64
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G L++ R+ V LA VA +L L +YL+ L + + G
Sbjct: 65 AHEGVLSKTRADVVCERSLAEVASQLELGEYLK-----------------LGHGEENGGG 107
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPV---TELY 240
++ D VE+ IGA+ ID ++ +V +F + ++ + E K + +L
Sbjct: 108 RQKTSIVGDAVEAVIGAMIIDGGYAAAERVVLDLFADKIRLAVKGELYKDYKTLLQEKLQ 167
Query: 241 EVCQKNKLKVKFV-----DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+ + ++ + V D KE A + ++ LGRG KKE + AA DAL
Sbjct: 168 DYIKGVNIRYQIVNEAGPDHSKEFVA-AVLVDGNELGRGIGKSKKE-SEQAAAADAL 222
>gi|451812308|ref|YP_007448762.1| ribonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
gi|451778210|gb|AGF49158.1| ribonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
Length = 240
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 26/187 (13%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
L+ E LGY+F N NLLE A T S P ERLE++GDSVLN +T F Y +
Sbjct: 4 LELERSLGYKFRNSNLLELALTHRSNGSPHN----ERLEFLGDSVLNFAITIFLFEKYSD 59
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G L+RLR++ V LA +A +L L +YL+ L E +++ +G
Sbjct: 60 VDEGGLSRLRASLVQQNSLATIASELNLSRYLK----LGEGELK-------------SGG 102
Query: 186 VDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ P +LAD +E+ GA+F D N ++ K F +LL + +T+ + L E+
Sbjct: 103 CNRPSILADCLEAIFGAIFKDSSFNEVKIVIEKQFVKLLNNL-DLKTMCKDAKSLLQELL 161
Query: 244 QKNKLKV 250
Q K+ +
Sbjct: 162 QSRKISL 168
>gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|81388984|sp|Q67PF5.1|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 235
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 32/233 (13%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F +++LL EA T + R + ERLE++GDSVL +++ + YP+LP
Sbjct: 16 EALGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPE 75
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT++R+A V LA A LG+ +++R + EA+ D
Sbjct: 76 GELTKIRAAVVCEPSLAERARVLGIGRHMRFGR----------GEAVSGR--------DR 117
Query: 189 PKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
L+D E+ +GA+++D ++ V + +L++ ++ T+L E Q+
Sbjct: 118 DSTLSDAFEAVVGALYLDGGLEAAQRFVLRELGQLVEA-ARQGLVRVDYKTQLQEQLQRQ 176
Query: 247 KLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
L E H ++ E +LLG G KKE A AA+ AL
Sbjct: 177 GAAAPQYRLLVEEGPAHLRRFQVGVYFEGRLLGTGWGRNKKE-AEQEAARQAL 228
>gi|384082329|ref|ZP_09993504.1| ribonuclease III [gamma proteobacterium HIMB30]
Length = 226
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 29/190 (15%)
Query: 64 NANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFL 122
++ NLD+ + LGYRF + + LE A T S ERLE++GDS++N ++ + F
Sbjct: 2 SSTNLDDLQSRLGYRFKDISHLESALTHRSMGPSH--NERLEFLGDSIVNFVVAEALFRR 59
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
YP G LTR+R++ V + L+++A +L L + +R L
Sbjct: 60 YPEAREGKLTRMRASLVRGQSLSQLARRLQLGETIR-----------------LGSGERK 102
Query: 183 NGLVDAPKVLADIVESTIGAVFID-----CNSSIDIVWKVFKELLKPMISPETLKTHPVT 237
+G +LAD +E+ IGAVF+D C S I I W + EL ++P + P T
Sbjct: 103 SGGRRRDSILADAMEAVIGAVFLDGGMAACQSCI-ITW-LESEL--AAVNPNQVDKDPKT 158
Query: 238 ELYEVCQKNK 247
L E Q+ K
Sbjct: 159 ALQEWMQREK 168
>gi|340960215|gb|EGS21396.1| hypothetical protein CTHT_0032530 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1596
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F + LL AF P+ P E SY+RLE++GD++L++ + + F +P P
Sbjct: 1289 LGYTFRHPRLLRSAFQHPTYPSVYEHLPSYQRLEFLGDALLDMAIVEWLFARFPGADPQW 1348
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPL----LEEQIREFSEAIL---------- 176
LT + A V+ + L + LG HK + P L + E EA+L
Sbjct: 1349 LTEHKMAMVSNQFLGCLGFMLGFHKNIACCSPQVGKDLARYVAEMEEALLAAKEDAVRAG 1408
Query: 177 --------DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP 228
D+ L+ + PK L D+VE+ +GAVF+D + V + ++P
Sbjct: 1409 KTEDDWARDFWLNCS---RPPKCLPDVVEAYVGAVFVDSGYNFGEVRAFLERHIRPFFED 1465
Query: 229 ETL-----KTHPVTELYEVCQ 244
L HPVT L V Q
Sbjct: 1466 MRLYDTFANNHPVTMLVAVMQ 1486
>gi|418309743|ref|ZP_12921294.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21331]
gi|365237866|gb|EHM78705.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21331]
Length = 243
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 36/240 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ + N +L ++AF+ S R ERLE++GD+VL L +++ F +PNLP
Sbjct: 24 LGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+GL++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIGLNEMI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVTELYE-VCQK 245
P +++D E+ IGA+++D +DIVWK ++++ P + L T+ E V Q+
Sbjct: 127 PSLISDAFEAFIGALYLD--QGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQ 184
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
NK V + +L KE H + ++ + + G KKE + RAA+ A ++++
Sbjct: 185 NKGDVTY-NLIKEEGPAHRRLFTSEVILQGEAIAEGKGKTKKE-SEQRAAESAYKQLKQI 242
>gi|407793341|ref|ZP_11140375.1| RNase III, dsRNA-specific ribonuclease [Idiomarina xiamenensis
10-D-4]
gi|407214964|gb|EKE84805.1| RNase III, dsRNA-specific ribonuclease [Idiomarina xiamenensis
10-D-4]
Length = 230
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 28/181 (15%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
SLP E+++GYRF +L+E+A T S + YERLE++GDS+L++++ E +
Sbjct: 2 SLPRPPLAQLEKVIGYRFQRDDLVEQALTHRSASAKH--YERLEFLGDSILSVVIADELY 59
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL 180
+P G L+R+R+ V LA++A + GL ++L +L
Sbjct: 60 HRFPEAAEGDLSRMRATLVCGRALAKLAKQFGLGEFL-----------------VLGPGE 102
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSID----IVWKVFKELL---KPMISPETLKT 233
+G +LAD +E+ IGAV+++ S +D ++ + E L KP IS + KT
Sbjct: 103 LKSGGYRRESILADTMEALIGAVYLE--SGMDACRPMILSWYAESLAKIKPGISQKDAKT 160
Query: 234 H 234
Sbjct: 161 Q 161
>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
Length = 229
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP----ETLKTHPVTELYE 241
P +LAD+ ES IGA+++D + I V + ++ P I ET+ T+L E
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIAKVVTFLERIIFPKIDAGAYLETVDYK--TQLQE 166
Query: 242 VCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
+ Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N
Sbjct: 167 IVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQ 225
Query: 295 I 295
+
Sbjct: 226 L 226
>gi|170719010|ref|YP_001784170.1| ribonuclease III [Haemophilus somnus 2336]
gi|189043321|sp|B0USS1.1|RNC_HAES2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|168827139|gb|ACA32510.1| Ribonuclease III [Haemophilus somnus 2336]
Length = 223
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 26/181 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG++F N + L++A T S F+ ERLE++GDS+LN + K + +P G L+R
Sbjct: 10 LGHQFTNLDYLKQALTHRSAAA--FNNERLEFLGDSILNFAIGKALYEKFPKSNEGELSR 67
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V + LA VA ++ L YL+ L+ +G +L+
Sbjct: 68 MRATLVKEQTLAVVARQVELGDYLKLGAGELK-----------------SGGFRRESILS 110
Query: 194 DIVESTIGAVFIDCNSSIDI----VWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
D VE+ I A+++D + ID+ V++ ++ELL+ I P + P T L E Q ++LK
Sbjct: 111 DCVEALIAAIYLD--AGIDVALARVYQWYQELLE-QIKPGEAQKDPKTRLQEFLQGHRLK 167
Query: 250 V 250
+
Sbjct: 168 L 168
>gi|393762804|ref|ZP_10351430.1| ribonuclease III [Alishewanella agri BL06]
gi|392606426|gb|EIW89311.1| ribonuclease III [Alishewanella agri BL06]
Length = 225
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 25/193 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+F + +LLE+A T SC + ERLE++GD++L L++ + F +P G LTR
Sbjct: 13 LGYQFQHISLLEQALTHRSCKGQH--NERLEFLGDALLGLIIAEALFARFPQTREGDLTR 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RSA V LA +A +LGL +LR L+ +G +LA
Sbjct: 71 MRSALVKGVTLASIAQELGLSDFLRLGPGELK-----------------SGGYRRESILA 113
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNKLKV 250
D +E+ +GA+++D S +D E P I+P K T+L E Q +L +
Sbjct: 114 DALEAILGAIYLD--SGMDACKSRILEWFGPRLQEIAPGQQKDSK-TQLQEYLQGLRLPL 170
Query: 251 KFVDLWKESTAFH 263
D+ + H
Sbjct: 171 PAYDVIATAGEAH 183
>gi|339477725|ref|YP_004706545.1| ribonuclease III [Candidatus Moranella endobia PCIT]
gi|338172276|gb|AEI74677.1| ribonuclease III [Candidatus Moranella endobia PCIT]
Length = 229
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 22/180 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LGY FNN +LL +A T S + ERLE++GDS+L+ ++ K + ++P + G
Sbjct: 11 QQKLGYNFNNYDLLLQALTHRSASSKH--NERLEFLGDSILSYVIAKSLYEMFPLVDEGD 68
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++R+R+ V LA +A +L L + L IL + +G ++
Sbjct: 69 MSRIRATLVRGNTLAEMARELELSRCL-----------------ILGHGELKSGGINRES 111
Query: 191 VLADIVESTIGAVFIDCN-SSID-IVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LAD +E+ IG++F+D N ++D ++ K ++ L I+P + P T+L E Q+ L
Sbjct: 112 ILADALEALIGSIFLDSNIQTVDHLILKWYRTRLAK-INPREQQKDPKTKLQEYLQRRHL 170
>gi|113461383|ref|YP_719452.1| ribonuclease III [Haemophilus somnus 129PT]
gi|112823426|gb|ABI25515.1| RNAse III [Haemophilus somnus 129PT]
Length = 227
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 26/181 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG++F N + L++A T S F+ ERLE++GDS+LN + K + +P G L+R
Sbjct: 14 LGHQFTNLDYLKQALTHRSAAA--FNNERLEFLGDSILNFAIGKALYEKFPKSNEGELSR 71
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V + LA VA ++ L YL+ L+ +G +L+
Sbjct: 72 MRATLVKEQTLAVVARQVELGDYLKLGAGELK-----------------SGGFRRESILS 114
Query: 194 DIVESTIGAVFIDCNSSIDI----VWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
D VE+ I A+++D + ID+ V++ ++ELL+ I P + P T L E Q ++LK
Sbjct: 115 DCVEALIAAIYLD--AGIDVALARVYQWYQELLE-QIKPGEAQKDPKTRLQEFLQGHRLK 171
Query: 250 V 250
+
Sbjct: 172 L 172
>gi|442804615|ref|YP_007372764.1| ribonuclease 3 [Clostridium stercorarium subsp. stercorarium DSM
8532]
gi|442740465|gb|AGC68154.1| ribonuclease 3 [Clostridium stercorarium subsp. stercorarium DSM
8532]
Length = 239
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 35/241 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E+ +GY + +K+ +A S E S ERLE++GDSVLN L+T F +
Sbjct: 13 EKNIGYVYKDKSKALQAIIHSSYAYEHRREGLSSNERLEFLGDSVLNFLITDRLFKEVSD 72
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+P G +++LR++ V+ L+ A KL + + L K E I+ G
Sbjct: 73 MPEGEMSKLRASVVSEASLSECAKKLNVGEVLLLGK----------GEEIM-------GG 115
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
P +LAD +E+ IG++++D + D V + KE + I+ TL + T+L E
Sbjct: 116 RKRPSILADAMEAIIGSIYLDGGLEPASDFVSRFLKENYEKAING-TLFSDYKTKLQEEV 174
Query: 244 QKNK-LKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
QK+ +K++ + E+ H + + + +G+G KKE A +AA DALN I
Sbjct: 175 QKSSNSNIKYI-VISETGPDHDKVFTVAVLVNGEQMGQGTGKTKKE-AEQKAAGDALNRI 232
Query: 296 E 296
+
Sbjct: 233 K 233
>gi|299769157|ref|YP_003731183.1| ribonuclease III [Acinetobacter oleivorans DR1]
gi|298699245|gb|ADI89810.1| ribonuclease III [Acinetobacter oleivorans DR1]
Length = 230
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 28/233 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F LL+ A T S ++ +YERLE++GDS+L +++ + YPN G LTR
Sbjct: 17 IGYQFKQLELLQLALTHRSVSHKY-NYERLEFLGDSLLGMIIANYLYHAYPNENEGRLTR 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 76 MRATLVRQEALGKIATDLQLSRCL-----------------ILSTGELKSGGHHRESILA 118
Query: 194 DIVESTIGAVFIDC---NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA++ID N DIV K + L + + LK P + L E Q K +
Sbjct: 119 DTVEAIIGAIYIDSGDLNLLTDIVLKWYVPYLDHIEPTDQLKD-PKSRLQEYLQARKKPL 177
Query: 251 ---KFVDLWKESTAFHIFIE---DQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ VD+ ++ H +E D L + A AA + L +E+
Sbjct: 178 PVYEVVDIQGDAPHQHFKVECLIDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ 230
>gi|365873819|ref|ZP_09413352.1| ribonuclease III [Thermanaerovibrio velox DSM 12556]
gi|363983906|gb|EHM10113.1| ribonuclease III [Thermanaerovibrio velox DSM 12556]
Length = 227
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 23/139 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSY--ERLEYVGDSVLNLLLTKEQFFLYPNLP 127
++ +GYRF++ LL EA T S E SY ERLE++GDSV+ L + +E F YP+
Sbjct: 15 QKAVGYRFSDTQLLIEALTHSSFANESGLSYCNERLEFLGDSVIGLCVAEELFIRYPSER 74
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT++R+ V E LA A GL +LR K L NG D
Sbjct: 75 EGRLTKMRARVVCCEALANAARTAGLADHLRLGKAL------------------KNGATD 116
Query: 188 APKVLADIVESTIGAVFID 206
+ +LAD E+ +GAV++D
Sbjct: 117 S--ILADAFEALLGAVYLD 133
>gi|443893959|dbj|GAC71147.1| dsRNA-specific nuclease Dicer and related ribonucleases [Pseudozyma
antarctica T-34]
Length = 1764
Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+ + G+ + +L EAFT PS SY+RLE++GD+ L+L + + F +P+L PG
Sbjct: 1474 QSLFGHVYRYPHLGLEAFTHPSLLASVLPSYQRLEFLGDAWLDLYIVRYIFSAHPDLSPG 1533
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL---- 185
LT L+ + LA + +LGLH+Y+ N +L + +S A+ +
Sbjct: 1534 ELTALKGMLASNSTLAALGHRLGLHRYVASNSEVLVSTLSAYSTAMEGAGEGTAYWHKVD 1593
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP 224
V PK LAD VE++ ++ +D + + VF L P
Sbjct: 1594 VGVPKALADAVEASFASIVVDSSFDPSMAQGVFDRLFVP 1632
>gi|365154598|ref|ZP_09351029.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
gi|363649573|gb|EHL88682.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
Length = 223
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 32/242 (13%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
NL+E E LGY+F LLEEA T S + + ERLE++GD+V++LL+ + F +
Sbjct: 3 NLEEFERNLGYKFKQSELLEEALTHKSTKQAL-NNERLEFLGDAVMDLLVAEYLFKKFSK 61
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +++LR+A VN + A ++ +L + ++LR L +NG
Sbjct: 62 IAEGDMSKLRAALVNEKSFANMSRRLKMGEFLR-----------------LSQAEENNGG 104
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKV---FKELLKPMISPETLKTHPVTELYEV 242
+ +L+D E+ +GA++++ + +D V ++ EL P I L+ T L EV
Sbjct: 105 REKDSILSDAFEAVMGAIYLE--AGLDKVREISISLLELCYPKIDFAHLEKDYKTALQEV 162
Query: 243 CQKN-------KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q N +L F K+ + + + + R + KK+ A AAK AL I
Sbjct: 163 TQANLGVIPTYELISSFGPDHKKEFEIALLLNGKEISRAVGSSKKQ-AQQLAAKIALEKI 221
Query: 296 ER 297
++
Sbjct: 222 KK 223
>gi|414453403|gb|AFX00003.1| Dicer [Mnemiopsis leidyi]
Length = 2002
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 29/186 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+ +GY F L EA T S E Y+RLE++GD+VL++L+ + +P G
Sbjct: 1727 EKAIGYEFKEPLYLLEALTHASFTEIDACYQRLEFLGDAVLDVLMVFRIYEDHPEYDQGQ 1786
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHN----------------KPLLEEQIREFS-- 172
+T L S+ V L++V KL LHK L ++ K LE+ ++ S
Sbjct: 1787 MTDLLSSLVCNTTLSKVCTKLQLHKSLLYDSAELFNVLAGFFMNFEKDQLEQWCKDLSLE 1846
Query: 173 -----EAILDYPLH------SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKEL 221
D P N +V APK+L D+VES IGA+++DC+ I V++V
Sbjct: 1847 RVFVDTVDCDTPDKIPILNLDNKVVQAPKLLGDLVESVIGAIYLDCDEDILRVYEVIWPW 1906
Query: 222 LKPMIS 227
+P +
Sbjct: 1907 FEPFYT 1912
>gi|262375526|ref|ZP_06068759.1| ribonuclease III [Acinetobacter lwoffii SH145]
gi|262309780|gb|EEY90910.1| ribonuclease III [Acinetobacter lwoffii SH145]
gi|407008100|gb|EKE23572.1| hypothetical protein ACD_6C00421G0002 [uncultured bacterium]
Length = 232
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 30/233 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F +LL+ A T S + +YERLE++GDS+L +++ F YP+ G LTR
Sbjct: 17 IGYQFKQADLLKLALTHRSVSHKH-NYERLEFLGDSLLGMIIANYLFNAYPSENEGRLTR 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 76 MRATLVRQEALGKIANDLKLSQNL-----------------ILSTGELKSGGHHRESILA 118
Query: 194 DIVESTIGAVFIDCNSSI---DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA+++DC IV K ++ L + + LK P + L E Q K +
Sbjct: 119 DTVEAIIGAIYVDCGDLTVLEPIVLKWYEPYLDHIEPTDQLKD-PKSRLQEYLQARKKPL 177
Query: 251 ---KFVDLWKESTAFHIFIEDQLLG----RGAYAPKKEIAHNRAAKDALNNIE 296
+ VD+ ++ H +E Q+ G +G A ++ A A D L +E
Sbjct: 178 PVYEVVDIQGDAPNQHFKVECQIAGLPTMQGEGASRR-FAEQAVAADILKLLE 229
>gi|381393604|ref|ZP_09919325.1| ribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379330820|dbj|GAB54458.1| ribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 224
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 26/179 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
L Y F+N +LL++A T S + ERLE++GD+VL L++ + + +PNLP G LTR
Sbjct: 12 LHYTFSNVSLLQQALTHRSAARKH--NERLEFLGDAVLGLVIAQRVYEKFPNLPEGKLTR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V E LA+VA +L L + ++ ++ R +LA
Sbjct: 70 MRSNLVKGETLAKVARELSLGELMKLGPGEMKSGGRRRDS-----------------ILA 112
Query: 194 DIVESTIGAVFIDCNSSIDIVW----KVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
D VE+ +GA++++ S ID V +F++ +K + E +K + T+L E Q +L
Sbjct: 113 DAVEAILGAIYVE--SGIDAVALTINTLFEKRIKALDPDEQIKDNK-TQLQEYLQSRQL 168
>gi|51473232|ref|YP_066989.1| ribonuclease III [Rickettsia typhi str. Wilmington]
gi|383752006|ref|YP_005427106.1| ribonuclease III [Rickettsia typhi str. TH1527]
gi|383842841|ref|YP_005423344.1| ribonuclease III [Rickettsia typhi str. B9991CWPP]
gi|81390308|sp|Q68XY5.1|RNC_RICTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51459544|gb|AAU03507.1| RNase D [Rickettsia typhi str. Wilmington]
gi|380758649|gb|AFE53884.1| ribonuclease III [Rickettsia typhi str. TH1527]
gi|380759488|gb|AFE54722.1| ribonuclease III [Rickettsia typhi str. B9991CWPP]
Length = 227
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 25/199 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E +LGY F NK LL EA + PS + YERLE++GD+VLNLL+T+ F + N
Sbjct: 8 ETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFKNFEN 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G+L ++RS V E + V KL L Y+ I+ + G
Sbjct: 68 YKEGNLAKIRSYLVCKETICIVGTKLALKDYI-----------------IMTHGEEVAGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PVTELYEVCQ 244
D P + ++ E+ I A+++D N I+I + ++L + + L + P T L E Q
Sbjct: 111 RDNPNNIENVTEALIAAIYLDSN--IEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQ 168
Query: 245 KNKLKVKFVDLWKESTAFH 263
+ + L K A H
Sbjct: 169 ASSNHLPIYRLIKREGAAH 187
>gi|388548933|gb|AFK66134.1| ribonuclease III [Ostreococcus lucimarinus virus OlV3]
Length = 229
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 34/231 (14%)
Query: 64 NANNLDEEEILGYRFNNKNLLEEAFTDPSCPERF--F--SYERLEYVGDSVLNLLLTKEQ 119
N N D E+++G + N + + AFT S + + F S+E LE++GDSVL ++TK
Sbjct: 2 NFNQQDIEQLVGTKIKNLSFYQRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKFL 61
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F Y G LT+ R+ V +E LA +A+KLGL+ + ++D
Sbjct: 62 FDRYEERQEGFLTKARTKLVRSETLADIALKLGLNNMV-----------------LMDEK 104
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKE----LLKPMISPETLKT 233
N + PK+L D+ E+ +GA+++D + + V +++ + L ++ + K
Sbjct: 105 GQRNQWNNNPKILEDVFEALVGAIYMDLGLLHAKEFVLRIYNDPRYIDLNAIMIDDNFKD 164
Query: 234 HPVTELYEVCQKNKLKV-KFVDLWKESTAFHI--FIEDQLLGRGAYAPKKE 281
H L CQ ++ ++ + F+I +I Q GRG KK+
Sbjct: 165 H----LMRYCQIMNFQLPEYRVVGHHEGIFYIDAYINGQFGGRGQAKSKKQ 211
>gi|314055212|ref|YP_004063550.1| ribonuclease III [Ostreococcus tauri virus 2]
gi|313575103|emb|CBI70116.1| ribonuclease III [Ostreococcus tauri virus 2]
gi|388548675|gb|AFK65877.1| ribonuclease III [Ostreococcus lucimarinus virus OlV6]
Length = 230
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 34/231 (14%)
Query: 64 NANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFF----SYERLEYVGDSVLNLLLTKEQ 119
N N D E+++G + N + + AFT S + + S+E LE++GDSVL ++TK
Sbjct: 2 NFNQQDIEQLVGTKIKNLSFYQRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKFL 61
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F Y G LT+ R+ V +E LA +A+KLGL+ + ++D
Sbjct: 62 FDRYEERQEGFLTKARTKLVRSETLADIALKLGLNNMV-----------------LMDEK 104
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKE----LLKPMISPETLKT 233
N + PK+L D+ E+ +GA+++D + + V +++ + L ++ + K
Sbjct: 105 GQRNQWNNNPKILEDVFEALVGAIYMDLGLLHAKEFVLRIYNDPRYINLNAIMIDDNFKD 164
Query: 234 HPVTELYEVCQKNKLKV-KFVDLWKESTAFHI--FIEDQLLGRGAYAPKKE 281
H L CQ ++ ++ + F+I +I Q GRG KK+
Sbjct: 165 H----LMRYCQIMNFQLPEYRVVGHHEGIFYIDAYINGQFGGRGQAKSKKQ 211
>gi|289423974|ref|ZP_06425766.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
gi|289155610|gb|EFD04283.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
Length = 236
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 32/237 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E+ +GY FN+K ++ A T S Y ERLE++GDSVL L+++ F + +LP
Sbjct: 16 EKKIGYIFNDKENIQVALTHSSFANEHKEYKYNERLEFLGDSVLGLVVSDYLFSVRTDLP 75
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT+ R+ V E L+ VA KL L +YL +L +G D
Sbjct: 76 EGQLTKFRANVVCEESLSVVARKLNLGEYL-----------------LLGNGERQSGGSD 118
Query: 188 APKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+LAD E+ I A++ID + + + + ++++ I + + T L EV Q
Sbjct: 119 RDSILADATEAVIAAIYIDGGFDKAKEFIMYNLRDVIAKTIDGNIFRDYK-TILQEVIQS 177
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
++ + L +E H + +++LG G KK+ A AAK+AL N+
Sbjct: 178 KNGRISY-RLVQEKGPDHDKVFEMEVRSGNKVLGFGVGKNKKD-AEKEAAKNALENM 232
>gi|378706237|gb|AFC35038.1| hypothetical protein OtV6_130 [Ostreococcus tauri virus RT-2011]
Length = 230
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 34/230 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF----SYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E+++G + + L ++AFT S + + S+E LE++GDSVL ++TK F + +
Sbjct: 9 EQLIGTKIKDLTLYQKAFTHKSALKEYEQLNESFETLEFMGDSVLGFIITKFLFDRHESK 68
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G LT+ R+ V +E LA +A+KLGL+ + ++D NG
Sbjct: 69 QEGFLTKARTKLVRSETLAAIALKLGLNDLV-----------------LMDEKGMRNGWN 111
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKEL----LKPMISPETLKTHPVTELY 240
+ PK+L D+ E+ +GA+++D + V +++++ L ++ + K H L
Sbjct: 112 NNPKILEDVFEALVGAIYMDLGLLHAKQFVLRIYQDPKYVNLNSIMVDDNYKDH----LM 167
Query: 241 EVCQKNKLKV-KFVDLWKESTAFHI--FIEDQLLGRGAYAPKKEIAHNRA 287
CQ L + ++ + E F I +I +Q GRG KK+ N A
Sbjct: 168 RYCQIMNLPLPEYRVVAHEDGVFFIDAYINNQYAGRGYAKSKKQAEQNAA 217
>gi|419760458|ref|ZP_14286737.1| ribonuclease III [Thermosipho africanus H17ap60334]
gi|407514561|gb|EKF49376.1| ribonuclease III [Thermosipho africanus H17ap60334]
Length = 230
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 43/232 (18%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPER--FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
LGYRF N+ LL A T S SYERLE++GD+V++LLL+ + + NL G++
Sbjct: 13 LGYRFRNEELLLTALTHTSFAHENNVKSYERLEFLGDAVIDLLLSTILYQEFTNLNEGTM 72
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
++++A + + L + I +G+ Y+ K L S G +
Sbjct: 73 AQIKAAVASEDILYEIGIDIGIENYIFLGKG----------------ELKSGGKYKKS-I 115
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM-------------------ISPETLK 232
+AD+VE+ + A+++D ++++ K+F + K I+ + K
Sbjct: 116 IADVVEALVAAIYVDSKKDLNVIEKIFHDTFKRYIEIFLSGKRIFDYKTKLQEITQDRFK 175
Query: 233 THPVTELYEVCQKNK-LKVKFVD--LWKESTAFHIFIEDQLLGRGAYAPKKE 281
PV E V QKNK + ++D ++ ++ F ++L + AY KE
Sbjct: 176 QLPVYET--VSQKNKFITTLYIDGKIYSKAEGFSKKESEKLAAKIAYEKLKE 225
>gi|158320491|ref|YP_001512998.1| ribonuclease III [Alkaliphilus oremlandii OhILAs]
gi|158140690|gb|ABW19002.1| Ribonuclease III [Alkaliphilus oremlandii OhILAs]
Length = 241
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 35/241 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPN 125
++I+GY+F N +++ EA T S + ERLE++GDSVL +++++ + Y +
Sbjct: 15 QKIIGYQFKNLSIINEALTHSSYTNEYRKKQVQNNERLEFLGDSVLGIVVSEYIYLKYKD 74
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G LT++R+ V L A ++ L +YL +L + G
Sbjct: 75 LPEGELTKIRANVVCEPSLGNQAKEIKLGQYL-----------------LLGKGEEATGG 117
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEV 242
D +LAD E+ IGA+++D I + K ++L I L T+L E+
Sbjct: 118 RDRVSILADAFEAVIGALYLD--GGIAVAGKFILDMLTRSIELAIEGNLFRDYKTDLQEI 175
Query: 243 CQKN---KLKVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q K+ K V ++ I + ++ LG G KKE A RAAK AL +
Sbjct: 176 LQSKYDEKISYKVVSEVGPDHNKTFEVEILLGEKSLGMGEGKSKKE-AEQRAAKSALKKV 234
Query: 296 E 296
E
Sbjct: 235 E 235
>gi|332799147|ref|YP_004460646.1| ribonuclease 3 [Tepidanaerobacter acetatoxydans Re1]
gi|438002260|ref|YP_007272003.1| Ribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332696882|gb|AEE91339.1| Ribonuclease 3 [Tepidanaerobacter acetatoxydans Re1]
gi|432179054|emb|CCP26027.1| Ribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 238
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 120/245 (48%), Gaps = 36/245 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-ERFFSYE----RLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G +FNN N L +AF PS E+ Y+ RLE++GD+VL L +++ + Y
Sbjct: 15 QENIGIQFNNLNTLNQAFIHPSLTNEKEKPYQENNQRLEFLGDAVLELAISEYLYRHYDF 74
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
L G +T++R+ V LA++A +L L YL IL + G
Sbjct: 75 LTEGQMTKIRAFTVCESSLAQIARQLFLGDYL-----------------ILSKGEENTGG 117
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ +LAD +E+ IGA++ID N ++ D + K + ++ I E T T+L E+
Sbjct: 118 REKVSILADTLEALIGAIYIDKNYKTTYDFIIKNLEAIIFKAIQGE-WGTDYKTDLQELL 176
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
QK ++ ES H + ++++LG G KK+ N AAK+AL +
Sbjct: 177 QKFDEDKILYNVVNESGPDHDKLFCVEVVWKNKILGTGIGKSKKQAEQN-AAKEAL---D 232
Query: 297 RLLNE 301
R+ NE
Sbjct: 233 RMNNE 237
>gi|239906016|ref|YP_002952755.1| ribonuclease III [Desulfovibrio magneticus RS-1]
gi|239795880|dbj|BAH74869.1| ribonuclease III [Desulfovibrio magneticus RS-1]
Length = 243
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 26/158 (16%)
Query: 55 DESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCP----ERFFSYERLEYVGDSV 110
D + +ES P + LD LG+ F LL A T SC E ERLE++GD+V
Sbjct: 8 DAASAESSP-LHPLD----LGHEFATPALLATALTHSSCANERGEGTRHNERLEFLGDAV 62
Query: 111 LNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIRE 170
L L +++E F L+P P G LT LRS VN LA +A++LGL ++R
Sbjct: 63 LELCVSEELFSLFPEAPEGELTLLRSQLVNEASLAAMALRLGLAGHVR------------ 110
Query: 171 FSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCN 208
L + G P +L+D+ E+ +GA+F+D
Sbjct: 111 -----LGRGEENQGGRSRPSLLSDVFEAVVGAIFLDGG 143
>gi|373464406|ref|ZP_09555945.1| ribonuclease III [Lactobacillus kisonensis F0435]
gi|371762608|gb|EHO51137.1| ribonuclease III [Lactobacillus kisonensis F0435]
Length = 229
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 35/217 (16%)
Query: 79 NNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+N++LL+EAFT S + YERLE++GD+VL L+++ F YP +P G LTR
Sbjct: 11 DNQDLLDEAFTQASYVNEHKGQNLKFYERLEFLGDAVLQLIVSSYIFQRYPKMPQGRLTR 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+A VN + + A + KY+R + EE+ G + +L
Sbjct: 71 LRAAMVNEKSFSTFARECTFDKYIRLGRG--EEKA---------------GARNRDSLLC 113
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK---THPVTELYEVCQKNK--- 247
DI ES +GAV++D + V K ++++ P + H TEL E+ Q +
Sbjct: 114 DIFESFVGAVYLDQGQA--TVEKFVQQVIFPKLDEGMFAEFFDHK-TELQELAQADGPVD 170
Query: 248 LKVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKK 280
+ + +D + S ++ I D+L G G KK
Sbjct: 171 IDYELIDEFGPDNDRSFKVNVSIGDKLFGVGIGHSKK 207
>gi|430848263|ref|ZP_19466089.1| ribonuclease 3 [Enterococcus faecium E1133]
gi|430535606|gb|ELA76006.1| ribonuclease 3 [Enterococcus faecium E1133]
Length = 228
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 35/218 (16%)
Query: 78 FNNKNLLEEAFTDPSCPE-----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
F++ NLLE+AFT S + ERLE++GD+VL L++++ F LYP+LP G LT
Sbjct: 17 FHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLPEGKLT 76
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
+ R+A V + L++ A + +Y+ +L ++G P +L
Sbjct: 77 KTRAAIVREDSLSKFAKECHFDQYV-----------------LLGKGEENSGGRTRPALL 119
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKNK-L 248
D+ E+ +GA+++D D ++++ P + +H + T+L EV QK+ +
Sbjct: 120 CDLFEAFLGALYLD--QGFDTTHAFIEKVIFPKVKAGAF-SHEMDHKTKLQEVLQKSGDV 176
Query: 249 KVKFVDLWKESTA------FHIFIEDQLLGRGAYAPKK 280
+++ + +E A ++++DQL+G G KK
Sbjct: 177 SIEYRLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 214
>gi|337292610|emb|CCB90626.1| Ribonuclease 3 [Waddlia chondrophila 2032/99]
Length = 243
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 107/242 (44%), Gaps = 37/242 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +G+ F +K LL AFT S + ERLEY+GDS+L L+ + + PN
Sbjct: 15 EAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILGFLIAEYLYKYLPNT 74
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P G L+ LRS V KL L +YL K EQ+ N
Sbjct: 75 PEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKG---EQM--------------NDGR 117
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV----TELYEV 242
+LAD+ ES IGA+++D ++ +FK K + E LKT P+ +L +
Sbjct: 118 GRDSILADLFESLIGAIYLDGGMDAARLF-LFKNFSKEI--EEILKT-PICNWKAQLQDY 173
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
CQK + ES H + I +Q +G G P K+ A AAKDA + I
Sbjct: 174 CQKKYRHPPLYKVVSESGPDHQKIFTISVLINNQEVGHGE-GPSKKEAQQAAAKDAFSRI 232
Query: 296 ER 297
E+
Sbjct: 233 EK 234
>gi|110834492|ref|YP_693351.1| ribonuclease III [Alcanivorax borkumensis SK2]
gi|123345468|sp|Q0VP19.1|RNC_ALCBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|110647603|emb|CAL17079.1| ribonuclease III [Alcanivorax borkumensis SK2]
Length = 228
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 21/179 (11%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+F + +LLE A T S R +YERLE++GD+ L +++ F +P G LTR
Sbjct: 12 LGYQFQDLSLLELALTHRSVS-RHRNYERLEFLGDAQLGQIISVALFEQFPEAAEGQLTR 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R++ V + LA VA +LGL +YL +L +G +LA
Sbjct: 71 MRASLVRGQTLALVARELGLGEYL-----------------VLGGGELKSGGFRRDSILA 113
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D +ES IGA+ +D ++V F L ISP++ + T L E Q K ++
Sbjct: 114 DALESIIGAMLLDGGEPRCREVVLAWFAPRLDA-ISPQSAQKDAKTRLQEWLQARKFEL 171
>gi|397169628|ref|ZP_10493060.1| RNAse III [Alishewanella aestuarii B11]
gi|396088932|gb|EJI86510.1| RNAse III [Alishewanella aestuarii B11]
Length = 226
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 19/135 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+FN +LLE+A T SC + ERLE++GD++L L++ + F +P G LTR
Sbjct: 14 LGYQFNQLSLLEQALTHRSCKGQH--NERLEFLGDALLGLIIAEALFARFPQTREGDLTR 71
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RSA V LA +A +LGL +LR L+ +G +LA
Sbjct: 72 MRSALVKGVTLASIAQELGLSDFLRLGPGELK-----------------SGGFRRESILA 114
Query: 194 DIVESTIGAVFIDCN 208
D +E+ +GA+++D
Sbjct: 115 DALEAILGAIYLDSG 129
>gi|375110957|ref|ZP_09757171.1| RNAse III [Alishewanella jeotgali KCTC 22429]
gi|374568989|gb|EHR40158.1| RNAse III [Alishewanella jeotgali KCTC 22429]
Length = 226
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 19/135 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+FN +LLE+A T SC + ERLE++GD++L L++ + F +P G LTR
Sbjct: 14 LGYQFNQLSLLEQALTHRSCKGQH--NERLEFLGDALLGLIIAEALFARFPQTREGDLTR 71
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RSA V LA +A +LGL +LR L+ +G +LA
Sbjct: 72 MRSALVKGVTLASIAQELGLSDFLRLGPGELK-----------------SGGFRRESILA 114
Query: 194 DIVESTIGAVFIDCN 208
D +E+ +GA+++D
Sbjct: 115 DALEAILGAIYLDSG 129
>gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 1450
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 58/277 (20%)
Query: 60 ESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQ 119
E+LP++ D E ++GY FN K L +AFT PS P SY+RLE++GDS+L+ ++
Sbjct: 1121 ENLPSSWFRDIESLVGYIFNKKVFLAQAFTHPSNPGSTMSYQRLEFLGDSILDHIIVDHI 1180
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAI--------------------------KLGL 153
F N + +R++ N + LA + I K+ L
Sbjct: 1181 FNSPRNFQHVDMHLMRASLANADFLAFLCIGMTTEEERGEIVEASRNGTFTRMTTRKISL 1240
Query: 154 HKYLRHNKPL-----LEEQIREFSEAILD----------YPLHSNGLVDAPKVLADIVES 198
+Y+RH ++ + ++ D YP + A K +D++ES
Sbjct: 1241 WQYMRHGTSWELTVSQQQTVNQYQALKADITKALYESDTYPWALLSRLRAQKFFSDLIES 1300
Query: 199 TIGAVFIDCNSSIDIVWKVFKEL-----LKPMISPETLKTHPVTELYEVCQKNKLKVKFV 253
+GA+FID + S+D + + L+ ++ E HP L E+ + +++ + V
Sbjct: 1301 VLGAIFIDSHGSLDACAAFLERIGLMNFLRRILQDEIDIMHPKQRLGEMVGQMQVRYETV 1360
Query: 254 DLWKESTA-------FHIFIEDQLL-----GRGAYAP 278
+ +E +F++D+ + GR + P
Sbjct: 1361 HVVEEEGGDALGHWTCKVFVDDECVFEEHDGRRRHYP 1397
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 27/154 (17%)
Query: 78 FNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSA 137
F + NL+ A P E +Y+R+E++GDS+L + + P G L+ +
Sbjct: 957 FTDLNLVITALCAPDAREAT-NYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDE 1015
Query: 138 NVNTEKLARVAIKLGLHKYL------------RHNKPLLEEQIREFSEAILDYPLHSNGL 185
V+ ++L+ AI+ GL K++ R+NK +EEQ D P
Sbjct: 1016 VVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAHVEEQ---------DIPRREM-- 1064
Query: 186 VDAPKVLADIVESTIGAVFIDCN-SSIDIVWKVF 218
+ K LAD++E+ +GA ID + ++ K+F
Sbjct: 1065 --STKTLADVIEALLGAATIDGGRTKVEKCLKIF 1096
>gi|452943710|ref|YP_007499875.1| ribonuclease III [Hydrogenobaculum sp. HO]
gi|452882128|gb|AGG14832.1| ribonuclease III [Hydrogenobaculum sp. HO]
Length = 232
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 34/245 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
EE +GYRF +KNL+++AFT S + +YE LE++GD+++N + +PN G
Sbjct: 8 EEKIGYRFRDKNLVKKAFTHISFSKSSENYEVLEFLGDALVNFMTVNILVEAFPNKKEGE 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L++L+S ++ E LA +A L KY+ +K E+++ G P
Sbjct: 68 LSQLKSFLISEEFLASLAKSLNFEKYILISKG---EELK--------------GSNKNPS 110
Query: 191 VLADIVESTIGAVFI----DCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK- 245
+L D+ E+ A++I DC + + FK + +++ +LK T L E+ QK
Sbjct: 111 ILCDVFEAFWAAIYIDSGYDCKLTKSLFEHHFKSQILEIVNSNSLKQDYKTALQEITQKK 170
Query: 246 -------NKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
N + V+ + K T +F + + G+G K+ A AAK+ L+ I+
Sbjct: 171 WKERPIYNVISVEGPEHRKTFTVECLFKDLRTTGKG---NSKKNAEQEAAKNMLHMIQD- 226
Query: 299 LNEKR 303
NEK+
Sbjct: 227 -NEKK 230
>gi|359411403|ref|ZP_09203868.1| Ribonuclease 3 [Clostridium sp. DL-VIII]
gi|357170287|gb|EHI98461.1| Ribonuclease 3 [Clostridium sp. DL-VIII]
Length = 232
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 114/242 (47%), Gaps = 39/242 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LG FNN LL+ A T S +F E RLE++GDSVL L +T+ F Y +
Sbjct: 10 EENLGVYFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDSVLQLCITEHLFNNYKHKS 69
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT++RS V L +A K+ L Y+R +K E++ E I
Sbjct: 70 EGELTKIRSLIVCENSLYEIARKINLGHYIRMSKG---EELTGGRERI------------ 114
Query: 188 APKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ AD VE+ + AV++D D + F+E++ I+ E + T+L E QK
Sbjct: 115 --SIQADAVEAILAAVYLDKGIGFVRDFILLHFEEVINKAINNEIVLDFK-TKLQEFLQK 171
Query: 246 NKLKVKFVDLWKESTAF-----------HIFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
+ V + E T F ++ I+ +L+G G+ KKE N AAK AL+
Sbjct: 172 DGE----VAIQYELTKFEGPPHRRKFFTNVVIDKKLMGEGSGYSKKEAEQN-AAKQALDV 226
Query: 295 IE 296
+E
Sbjct: 227 LE 228
>gi|386081946|ref|YP_005998523.1| Ribonuclease III [Rickettsia prowazekii str. Rp22]
gi|292571710|gb|ADE29625.1| Ribonuclease III [Rickettsia prowazekii str. Rp22]
Length = 225
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 25/199 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E +LGY F NK LL EA + PS + YERLE++GD+VLNLL+T+ F + N
Sbjct: 8 ETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFKNFEN 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G+L ++RS V E + V KL L Y+ I+ + G
Sbjct: 68 YKEGNLAKIRSYLVCKETICIVGTKLALKDYI-----------------IMTHGEEVAGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PVTELYEVCQ 244
D P + + E+ I A+++D N I+I + ++L + + + P T L E Q
Sbjct: 111 RDNPNNIENATEALIAAIYLDSN--IEITHNIIEKLWAEFMKVQNFTDYDPKTALQEWAQ 168
Query: 245 KNKLKVKFVDLWKESTAFH 263
N + L K A H
Sbjct: 169 ANSHHLPIYRLIKREGAAH 187
>gi|374323432|ref|YP_005076561.1| ribonuclease iii [Paenibacillus terrae HPL-003]
gi|357202441|gb|AET60338.1| ribonuclease iii [Paenibacillus terrae HPL-003]
Length = 232
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 77 RFNNKNLLEEAFTDPS-CPERFFSY----ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
+FNN+ LL++AFT S E FS ERLE++GD+VL L ++++ + YPN P G L
Sbjct: 15 QFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLYNQYPNRPEGEL 74
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
T+LR+A V L + A+ L +Y+ +L G P +
Sbjct: 75 TKLRAAIVCEPSLVKFAVGLEFGQYV-----------------LLGKGEELTGGRTRPAL 117
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI--SPETLKTHPVTELYEVCQKNKLK 249
LAD+ E+ +GA+++D +D V + + P I + + + TEL E+ Q + +
Sbjct: 118 LADVFEAFVGALYLD--QGLDAVRSFLERYIFPQIVLNGKLQMSDFKTELQELTQHHNMG 175
Query: 250 VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
+ + +E H ++++ + LG G KK
Sbjct: 176 MLEYKIVEERGPAHEREFVAEVYMDSERLGTGTGRSKK 213
>gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
Length = 252
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 26/197 (13%)
Query: 71 EEILGYRFNNKNLLEEAFT--DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+ L Y+F + +LLE+A T S P ERLE++GDSVLN ++ F +P +
Sbjct: 8 QAALDYQFGDASLLEQALTHRSHSGPHN----ERLEFLGDSVLNFVVASLLFVRFPKIDE 63
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G L+RLR+ V LA +A +L L +YLR L E +++ +G
Sbjct: 64 GDLSRLRANLVKQAALADIAGRLNLSQYLR----LGEGELK-------------SGGFRR 106
Query: 189 PKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
P +LAD +E+ AV++D +++ ++ + ++ +L + +TL P T L E+ Q
Sbjct: 107 PSILADALEALFAAVYLDGGFDAAQQVIQRQYETILD-NVDAKTLGKDPKTLLQELLQAR 165
Query: 247 KLKVKFVDLWKESTAFH 263
KL + + A H
Sbjct: 166 KLDLPAYTVVATHGAAH 182
>gi|451850832|gb|EMD64133.1| hypothetical protein COCSADRAFT_142297 [Cochliobolus sativus ND90Pr]
Length = 1435
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 35/186 (18%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP--ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ++G+ FNNK +L EA T P+ SYER E++GD+VL+ +++K + P LP
Sbjct: 1121 ENLVGHIFNNKAMLLEALTHPTFRGLNTHCSYEREEFLGDAVLDYIVSKRLYSHRPELPH 1180
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ--------------------- 167
+ +R+A VN LA + + + + + L E
Sbjct: 1181 HKMHGIRTAMVNASFLAYSMFETTVEEIFTNKETLQPETHQRALWQFLRSTSHELVMSRN 1240
Query: 168 --IREFSEAILD----------YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVW 215
IR SEA + +P H+ L D PK L+DIVES IGA++ID + S+ +
Sbjct: 1241 LAIRRHSEARIQITEALQHDARFPWHALSLTDPPKFLSDIVESMIGALYIDSHGSLPVCE 1300
Query: 216 KVFKEL 221
+ + L
Sbjct: 1301 EFVRRL 1306
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 91 PSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIK 150
PS + +Y+RLE++GD +L + + + +P G LT +S V+ LAR A+
Sbjct: 960 PSAVDGEENYQRLEFLGDCILKFITSLHLMATHLRMPEGMLTGKKSKLVSNGYLARAALA 1019
Query: 151 LGLHKYLRHN-------KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAV 203
GL +++ + KP Q+ AI + P + K++AD++ES IGA
Sbjct: 1020 KGLDEFILYKRFTGAKWKPRYVSQVL----AITNPPAKQE---KSSKLIADVIESLIGAS 1072
Query: 204 FI 205
++
Sbjct: 1073 YV 1074
>gi|452852629|ref|YP_007494313.1| Ribonuclease 3 [Desulfovibrio piezophilus]
gi|451896283|emb|CCH49162.1| Ribonuclease 3 [Desulfovibrio piezophilus]
Length = 233
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 20/139 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+E + +RF LL A T S E + ERLE++GD+VL L +++E F YP P
Sbjct: 7 QECIHHRFEQVKLLTTALTHSSYANEQEGYADNERLEFLGDAVLELCISEEGFKRYPCAP 66
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTR+RS V + LA +A +L LH+Y+R K E+I+ G D
Sbjct: 67 EGQLTRIRSQLVKEKSLASLARELQLHQYVRLGKG---EEIQ--------------GGRD 109
Query: 188 APKVLADIVESTIGAVFID 206
+LAD E+ +GAVF+D
Sbjct: 110 RDALLADTFEALLGAVFLD 128
>gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO]
gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12]
gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15]
gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68]
gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039]
gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162]
gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071]
gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980]
gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636]
gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679]
gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317]
gi|383327459|ref|YP_005353343.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|406580108|ref|ZP_11055328.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|406582771|ref|ZP_11057868.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|406585121|ref|ZP_11060116.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410938000|ref|ZP_11369858.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|415897961|ref|ZP_11551209.1| ribonuclease III [Enterococcus faecium E4453]
gi|416134603|ref|ZP_11598307.1| ribonuclease III [Enterococcus faecium E4452]
gi|427396987|ref|ZP_18889613.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430820973|ref|ZP_19439591.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430823321|ref|ZP_19441893.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430826392|ref|ZP_19444576.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430828822|ref|ZP_19446936.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430831864|ref|ZP_19449912.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430834832|ref|ZP_19452834.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430836416|ref|ZP_19454397.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430839338|ref|ZP_19457279.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430842447|ref|ZP_19460362.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430843103|ref|ZP_19461005.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430850746|ref|ZP_19468503.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430853246|ref|ZP_19470976.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430855706|ref|ZP_19473412.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430858967|ref|ZP_19476585.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430861281|ref|ZP_19478870.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430866354|ref|ZP_19481631.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430892080|ref|ZP_19484486.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430952324|ref|ZP_19486367.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430999207|ref|ZP_19488175.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|431036460|ref|ZP_19492230.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|431081664|ref|ZP_19495754.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|431118143|ref|ZP_19498097.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|431209600|ref|ZP_19500961.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|431234955|ref|ZP_19502978.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|431255661|ref|ZP_19504784.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|431303493|ref|ZP_19508340.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|431380466|ref|ZP_19510847.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|431438089|ref|ZP_19513252.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|431506848|ref|ZP_19515674.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|431545032|ref|ZP_19518673.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|431592292|ref|ZP_19521528.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|431695910|ref|ZP_19524804.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|431739025|ref|ZP_19527965.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|431740695|ref|ZP_19529606.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|431744016|ref|ZP_19532889.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|431747189|ref|ZP_19535988.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|431749381|ref|ZP_19538122.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|431753069|ref|ZP_19541747.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|431755895|ref|ZP_19544537.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|431757896|ref|ZP_19546525.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|431760118|ref|ZP_19548722.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|431763163|ref|ZP_19551716.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|431764954|ref|ZP_19553480.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|431768030|ref|ZP_19556471.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|431769465|ref|ZP_19557875.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|431773324|ref|ZP_19561650.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|431776421|ref|ZP_19564683.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|431779658|ref|ZP_19567850.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|431782539|ref|ZP_19570672.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|431784360|ref|ZP_19572402.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|447911625|ref|YP_007393037.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO]
gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12]
gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15]
gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68]
gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071]
gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636]
gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679]
gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317]
gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039]
gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162]
gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980]
gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|364090286|gb|EHM32892.1| ribonuclease III [Enterococcus faecium E4453]
gi|364092476|gb|EHM34848.1| ribonuclease III [Enterococcus faecium E4452]
gi|378937153|gb|AFC62225.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|404454612|gb|EKA01534.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|404457508|gb|EKA04045.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|404463103|gb|EKA08801.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410733639|gb|EKQ75562.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|425722734|gb|EKU85628.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430438958|gb|ELA49349.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430442419|gb|ELA52464.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430445116|gb|ELA54900.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430480505|gb|ELA57679.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430482717|gb|ELA59822.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430484901|gb|ELA61848.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430488543|gb|ELA65214.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430490796|gb|ELA67292.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430493528|gb|ELA69831.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430498157|gb|ELA74165.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430535105|gb|ELA75528.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430541068|gb|ELA81245.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430544486|gb|ELA84515.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430546248|gb|ELA86210.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430550314|gb|ELA90111.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430551582|gb|ELA91333.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430555745|gb|ELA95280.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430557459|gb|ELA96918.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430563000|gb|ELB02231.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|430563314|gb|ELB02543.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|430565596|gb|ELB04742.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|430568100|gb|ELB07157.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|430570632|gb|ELB09578.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|430572815|gb|ELB11651.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|430577859|gb|ELB16439.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|430580134|gb|ELB18614.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|430582334|gb|ELB20761.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|430586924|gb|ELB25166.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|430587235|gb|ELB25468.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|430591917|gb|ELB29944.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|430592080|gb|ELB30102.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|430596568|gb|ELB34392.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|430597863|gb|ELB35645.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|430602778|gb|ELB40328.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|430606079|gb|ELB43451.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|430606718|gb|ELB44056.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|430611510|gb|ELB48591.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|430612817|gb|ELB49848.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|430616010|gb|ELB52935.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|430618401|gb|ELB55248.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|430622857|gb|ELB59567.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|430625387|gb|ELB62027.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|430629725|gb|ELB66114.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|430629759|gb|ELB66147.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|430636747|gb|ELB72807.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|430637040|gb|ELB73084.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|430640972|gb|ELB76793.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|430641420|gb|ELB77222.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|430647176|gb|ELB82624.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|430649934|gb|ELB85301.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|445187334|gb|AGE28976.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
Length = 228
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 35/218 (16%)
Query: 78 FNNKNLLEEAFTDPSCPE-----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
F++ NLLE+AFT S + ERLE++GD+VL L++++ F LYP+LP G LT
Sbjct: 17 FHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLPEGKLT 76
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
+ R+A V + L++ A + +Y+ +L ++G P +L
Sbjct: 77 KTRAAIVREDSLSKFAKECHFDQYV-----------------LLGKGEENSGGRTRPALL 119
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKNK-L 248
D+ E+ +GA+++D D ++++ P + +H + T+L EV QK+ +
Sbjct: 120 CDLFEAFLGALYLD--QGFDTTHAFIEKVIFPKVKAGAF-SHEMDHKTKLQEVLQKSGDV 176
Query: 249 KVKFVDLWKESTA------FHIFIEDQLLGRGAYAPKK 280
+++ + +E A ++++DQL+G G KK
Sbjct: 177 SIEYRLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 214
>gi|139436972|ref|ZP_01771132.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC
25986]
gi|133776619|gb|EBA40439.1| ribonuclease III [Collinsella aerofaciens ATCC 25986]
Length = 241
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 31/222 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+EILG+ FNNK LL A T PS E SYERLE++GDS+L ++ + F YP
Sbjct: 11 QEILGHEFNNKVLLRAALTHPSAVEGQPVSASYERLEFLGDSILGAVVARSLFESYPEFD 70
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTRL+ + V+ L+ V+ +LG+ + R LHS
Sbjct: 71 EGKLTRLKVSLVSGATLSEVSHELGIDDIIIFGASETGTGARG---------LHS----- 116
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQK 245
L ++ ES +GA+++D D+ + LKP ++ E + +P + L E Q
Sbjct: 117 ---ALENVYESLVGALYLDAG--WDVAAEFIHRTLKPHLASERAEHPANPKSFLQECVQA 171
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
+ + L H + I+ GRG + KK
Sbjct: 172 DGHEPPAYKLVGSEGPAHAPTFTAVVLIDGIRQGRGTGSSKK 213
>gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
Length = 252
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 107/242 (44%), Gaps = 37/242 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +G+ F +K LL AFT S + ERLEY+GDS+L L+ + + PN
Sbjct: 24 EAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILGFLIAEYLYKYLPNT 83
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P G L+ LRS V KL L +YL K EQ+ N
Sbjct: 84 PEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKG---EQM--------------NDGR 126
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV----TELYEV 242
+LAD+ ES IGA+++D ++ +FK K + E LKT P+ +L +
Sbjct: 127 GRDSILADLFESLIGAIYLDGGMDAARLF-LFKNFSKEI--EEILKT-PICNWKAQLQDY 182
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
CQK + ES H + I +Q +G G P K+ A AAKDA + I
Sbjct: 183 CQKKYRHPPLYKVVSESGPDHQKIFTISVLINNQEVGHGE-GPSKKEAQQAAAKDAFSRI 241
Query: 296 ER 297
E+
Sbjct: 242 EK 243
>gi|429728361|ref|ZP_19263087.1| ribonuclease III [Peptostreptococcus anaerobius VPI 4330]
gi|429149860|gb|EKX92822.1| ribonuclease III [Peptostreptococcus anaerobius VPI 4330]
Length = 236
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 32/237 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E+ +GY FN+K ++ A T S Y ERLE++GDSVL L+++ F + +LP
Sbjct: 16 EKKIGYVFNDKENIQVALTHSSFANEHKEYKYNERLEFLGDSVLGLVVSDYLFSVRTDLP 75
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT+ R+ V E L+ VA KL L +YL +L +G D
Sbjct: 76 EGQLTKFRANVVCEESLSVVARKLNLGEYL-----------------LLGNGERQSGGSD 118
Query: 188 APKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+LAD E+ I A++ID + + + + ++++ I + + T L EV Q
Sbjct: 119 RDSILADATEAVIAAIYIDGGLDKAKEFIMYNLRDVIAKTIDGNIFRDYK-TILQEVIQS 177
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
++ + L +E H + +++LG G KK+ A AAK+AL N+
Sbjct: 178 KNGRISY-RLVQEKGPDHDKVFEMEVRSGNKVLGFGLGKNKKD-AEKEAAKNALENM 232
>gi|404493023|ref|YP_006717129.1| ribonuclease III [Pelobacter carbinolicus DSM 2380]
gi|90101632|sp|Q3A4Q8.1|RNC_PELCD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|77545087|gb|ABA88649.1| ribonuclease III [Pelobacter carbinolicus DSM 2380]
Length = 232
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 47/247 (19%)
Query: 71 EEILGYRFNNKNLLEEAFT---------DPSCPERFFSYERLEYVGDSVLNLLLTKEQFF 121
E+ + Y F+N+ LL EA T D + P+ ERLE++GD+VL ++++ F
Sbjct: 11 EDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDN----ERLEFLGDAVLGVVVSHYIFR 66
Query: 122 LYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLH 181
+P+LP G LTR+RS V+ + L + + L Y+R K EE+
Sbjct: 67 TFPHLPEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKG--EER-------------- 110
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
+G +LA+ +E+ +GAVF C+ D V +V + L P I + V Y+
Sbjct: 111 -SGGRQKSSLLANTMEALLGAVF--CDGGFDSVRRVIEALFIPHIQRAARRKTGVD--YK 165
Query: 242 VCQKNKLKVKFVDL------------WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
+ +L+ +F D+ + S + +G+G KK A AAK
Sbjct: 166 TRLQERLQARFGDVPQYVLIHADGPPHQRSYSVEAHFRGSCIGQGQGRSKKS-AEQAAAK 224
Query: 290 DALNNIE 296
AL +E
Sbjct: 225 QALEYLE 231
>gi|358396694|gb|EHK46075.1| hypothetical protein TRIATDRAFT_292263 [Trichoderma atroviride IMI
206040]
Length = 1456
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 110/258 (42%), Gaps = 49/258 (18%)
Query: 63 PNA--NNLDEE--EILGYRFNNKNLLEEAFTDPSC--PERFF-SYERLEYVGDSVLNLLL 115
PNA N+ E EI+GYRF LL AF S E+ Y++LE++GD+++++++
Sbjct: 1138 PNAAQRNMVERIAEIIGYRFQCAPLLRSAFKHSSYVYEEKIRRDYQQLEFLGDALIDMVV 1197
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI 175
+ +P P LT + A V+ + L + +KLGL K+L L IRE++
Sbjct: 1198 VDFLYTRFPEADPKWLTEHKMAMVSNQFLGFLCVKLGLSKHLMLATSSLHSLIREYTAEA 1257
Query: 176 LDYPLHSNG-------------------------------LVDAPKVLADIVESTIGAVF 204
+ + G + PK LAD+VE+ +GA+F
Sbjct: 1258 KEAEEKAKGCRKPHGNKAAAGSDKGASAEAPSVTLDFWAEIQQPPKALADVVEALVGAMF 1317
Query: 205 IDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTELYEV------CQKNKLKVKFV 253
+D S +V F + ++P +L HPVT L C + KL + V
Sbjct: 1318 VDSGYSFSVVQDFFAKFIQPYFEDMSLLSSFASNHPVTVLIHALQEDYRCTQWKLHMASV 1377
Query: 254 DLWKESTAFHIFIEDQLL 271
+ I E +LL
Sbjct: 1378 PPSTDDAGVAILAESELL 1395
>gi|333892335|ref|YP_004466210.1| ribonuclease III [Alteromonas sp. SN2]
gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2]
Length = 229
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 30/181 (16%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY FNN LLE+A T S ++ ERLE++GD++L +++ + F +P++P G LTR
Sbjct: 14 LGYTFNNVALLEQALTHRSAAKQH--NERLEFLGDAILGMVIGETLFKRFPDVPEGKLTR 71
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V + LA +A + + + L H P L S G + +LA
Sbjct: 72 MRSTLVKGDTLAELAREASMGELL-HLGP---------------GELKSGGHRRS-SILA 114
Query: 194 DIVESTIGAVFID------CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
D VE+ +GA+++D CN I +W+ E L P P+ KT L E Q K
Sbjct: 115 DAVEAVLGAIYLDSGMEEVCN-VIYHLWESRIEALNPNAHPKDSKTR----LQEYLQGRK 169
Query: 248 L 248
L
Sbjct: 170 L 170
>gi|244539261|dbj|BAH83304.1| ribonuclease III [Candidatus Ishikawaella capsulata Mpkobe]
Length = 226
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 35/234 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F+N LL++A T S ERLE++GDS+LN ++ + +P + G ++R
Sbjct: 13 LGYTFSNLELLQQALTHRSA--NIHHNERLEFLGDSILNYVIANALYHRFPCVNEGDMSR 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V LA++A + L +YL L+ +G +LA
Sbjct: 71 MRATLVRGHTLAKIAKEFDLGEYLYLGPGELK-----------------SGGCSRESILA 113
Query: 194 DIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVK 251
D +E+ IG +F+D + I +++ K +++ L+ ISP + P T L E Q L +
Sbjct: 114 DTIEALIGGIFLDSSIQIVENLILKWYQKRLE-QISPGEKQKDPKTRLQEYLQSCHLPLP 172
Query: 252 F-----VDLWKESTAFHIF-----IEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ V+ F I ++ L+G G P + A AA+ ALN +
Sbjct: 173 YYFVNQVEGEAHDQEFTIICNVSGLDKPLVGVG---PSRRQAEQHAAEQALNKL 223
>gi|309776509|ref|ZP_07671491.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308915737|gb|EFP61495.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 227
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 106/232 (45%), Gaps = 35/232 (15%)
Query: 78 FNNKNLLEEAFTDPSCPERFFSY----ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+++K L+ +A S SY ERLE++GD+VL L TK+ F L P L G +T
Sbjct: 15 YSDKTLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTKKLFLLEPELSEGQMTT 74
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V E LA +LGL KYL +L G +LA
Sbjct: 75 LRAQLVCEEALAEYNRQLGLGKYL-----------------MLGVGEEKTGGRQRDSILA 117
Query: 194 DIVESTIGAVFIDCN-SSIDIVWKVFKELLKPMIS-PETLKTHPV-TELYEVCQKNKLKV 250
D+ E+ +GAVF+D ++IDI + ++ P IS P++ K T+L E Q + K
Sbjct: 118 DMFEALLGAVFLDQGMAAIDI---ILSAVVTPAISRPKSEKVIDYKTKLQEYIQSDSRKT 174
Query: 251 KFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ S + + ++D LGRG KK A AAKDA +
Sbjct: 175 VHYETVNVSGPSNKPEFEVIVMLDDINLGRGKGFSKKR-AEQMAAKDAFEKM 225
>gi|182417248|ref|ZP_02948601.1| ribonuclease III [Clostridium butyricum 5521]
gi|237669155|ref|ZP_04529139.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182378894|gb|EDT76407.1| ribonuclease III [Clostridium butyricum 5521]
gi|237657503|gb|EEP55059.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 232
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 109/234 (46%), Gaps = 31/234 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LG FNN LL+ A T S +F E RLE++GD+VL L +T+ F + +
Sbjct: 10 EENLGVCFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDAVLQLCITEYLFNNFKSKS 69
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT+ RS V L +A KL L +Y+R +K E++ E I
Sbjct: 70 EGELTKTRSLIVCENSLYEIAKKLHLGEYIRMSKG---EELTGGRERI------------ 114
Query: 188 APKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ AD VE+ I AV++D D + F+E++K I+ E + T+L E QK
Sbjct: 115 --SIQADAVEAVIAAVYLDKGIGFVRDFILLHFEEIIKKAINNEIILDFK-TKLQEFLQK 171
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+ +L K H + IE+ ++G G KKE N AAK AL
Sbjct: 172 DGEVSIHYELIKHEGPPHRRKFFTNVVIENNIMGEGCGYSKKEAEQN-AAKQAL 224
>gi|352518402|ref|YP_004887719.1| ribonuclease III [Tetragenococcus halophilus NBRC 12172]
gi|348602509|dbj|BAK95555.1| ribonuclease III [Tetragenococcus halophilus NBRC 12172]
Length = 231
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 121/235 (51%), Gaps = 36/235 (15%)
Query: 78 FNNKNLLEEAFTDPSCPE-----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
F++ NLL +AFT S + ERLE++GD+VL LL+++ +F Y ++P G+LT
Sbjct: 17 FHDVNLLNQAFTHSSYVNEHRQLQLSDNERLEFLGDAVLELLVSRFLYFQYQDVPEGTLT 76
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
+LR+A V + LA A + +Y+ K EE HS G +L
Sbjct: 77 KLRAAIVREDSLASFAKECHFDRYIALGKG--EE--------------HSGGR-QRLALL 119
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKNKLK 249
D+ E+ +GA++ID ++ V K + ++ P + T +H + T L EV Q++ +
Sbjct: 120 CDLFEAFLGALYID--QGLEKVEKFLEMVIYPKVVSGTF-SHEMDYKTRLQEVLQRSGDR 176
Query: 250 VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ L KE H ++ +D+L+G+G + K+IA AA +AL ++ER
Sbjct: 177 IIDYRLVKEEGPAHERLFWIEVYCDDELVGKG-HGKSKKIAEQDAAANALADLER 230
>gi|152978261|ref|YP_001343890.1| ribonuclease III [Actinobacillus succinogenes 130Z]
gi|189043288|sp|A6VLV8.1|RNC_ACTSZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|150839984|gb|ABR73955.1| Ribonuclease III [Actinobacillus succinogenes 130Z]
Length = 224
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 22/177 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F+N LL++A T S + ERLE++GD++LNL + + + +P+ G L+R
Sbjct: 11 IGYEFSNLTLLKQALTHRSAAK--VHNERLEFLGDAILNLTIGEALYLQFPHCNEGELSR 68
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V + LA +A + L Y+ A+ L S G A +LA
Sbjct: 69 MRATLVREKTLAELAHQFDLGNYM----------------ALGAGELKSGGFRRAS-ILA 111
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
D VE+ IGA+ +D N +++IV + ++ LL+ I P + P T L E Q +L
Sbjct: 112 DCVEAIIGAMSLDSNLPKTMEIVRRWYEVLLRD-IQPGENQKDPKTRLQEYLQGKRL 167
>gi|262368562|ref|ZP_06061891.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
gi|381195725|ref|ZP_09903067.1| ribonuclease III [Acinetobacter lwoffii WJ10621]
gi|262316240|gb|EEY97278.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
Length = 230
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 28/233 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F LL+ A T S ++ +YERLE++GDS+L +++ + YP G LTR
Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKY-NYERLEFLGDSLLGMIIANYLYKAYPTENEGRLTR 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 76 MRATLVRQEALGKIANDLKLSQSL-----------------ILSTGELKSGGHHRESILA 118
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNKLKV 250
D VES IGA+++DC S + ++ + + +P I P P + L E Q K +
Sbjct: 119 DTVESIIGAIYVDC-SDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKAL 177
Query: 251 ---KFVDLWKESTAFHIFIE---DQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
VD+ ++ H +E D L + A AA D L +E+
Sbjct: 178 PVYDVVDIQGDAPNQHFKVECKVDGLSVVNGEGTSRRFAEQAAAADILKLLEQ 230
>gi|15616869|ref|NP_240082.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219681624|ref|YP_002468010.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|219682181|ref|YP_002468565.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|257471312|ref|ZP_05635311.1| ribonuclease III [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|384226064|ref|YP_005617227.1| ribonuclease III [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
gi|384226589|ref|YP_005618340.1| ribonuclease III [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
gi|384227120|ref|YP_005618870.1| ribonuclease III [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|414562616|ref|YP_005617807.1| ribonuclease III [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
gi|11134313|sp|P57346.1|RNC_BUCAI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807240|sp|B8D951.1|RNC_BUCA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807241|sp|B8D7F5.1|RNC_BUCAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|25289216|pir||H84959 ribonuclease III (EC 3.1.26.3) [imported] - Buchnera sp. (strain
APS)
gi|10038933|dbj|BAB12968.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219621914|gb|ACL30070.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|219624467|gb|ACL30622.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|311085996|gb|ADP66078.1| ribonuclease III [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|311086571|gb|ADP66652.1| ribonuclease III [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
gi|311087152|gb|ADP67232.1| ribonuclease III [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
gi|311087686|gb|ADP67765.1| ribonuclease III [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
Length = 226
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 35/234 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+++LGY F +K+LL++A T S + ERLE++GDS+L+ ++ + +P + G
Sbjct: 10 QKVLGYTFTHKDLLKQALTHRSASSK--HNERLEFLGDSILSFVIANALYQHFPYIDEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++R+R+ V LA +A + L +YL+ + L+ +G
Sbjct: 68 MSRMRATLVRGNTLAEIAYEFDLGEYLKLGQGELK-----------------SGGFRRES 110
Query: 191 VLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LA+ VE+ IG++++D N +++ K +++ L+ ISP + P T L E Q L
Sbjct: 111 ILANTVEALIGSIYLDSNIKTVEELILKWYEKRLEK-ISPGDTQKDPKTRLQEYLQSKHL 169
Query: 249 KVKF---VDLWKES--TAFHIF-----IEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+ V+++ E+ F I I + L+G G+ K E AA+ AL
Sbjct: 170 SLPLYFIVEVYGEAHNQLFTIHCKISTISEYLIGTGSSRRKAE---QDAAQKAL 220
>gi|384227694|ref|YP_005619439.1| ribonuclease III [Buchnera aphidicola str. Ak (Acyrthosiphon
kondoi)]
gi|345538634|gb|AEO08611.1| ribonuclease III [Buchnera aphidicola str. Ak (Acyrthosiphon
kondoi)]
Length = 226
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 35/234 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+++LGY F +K+LL++A T S + ERLE++GDS+L+ ++ + +P + G
Sbjct: 10 QKVLGYTFTHKDLLKQALTHRSASSK--HNERLEFLGDSILSFVIASALYQHFPYIDEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++R+R+ V LA +A + L +YL+ + L+ +G
Sbjct: 68 MSRMRATLVRGNTLAEIAYEFDLGEYLQLGQGELK-----------------SGGFRRES 110
Query: 191 VLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LA+ VE+ IG++++D N +++ K +++ L+ ISP + P T L E Q L
Sbjct: 111 ILANTVEALIGSIYLDSNIKTVEELILKWYEKRLEN-ISPGDTQKDPKTRLQEYLQSKHL 169
Query: 249 KVK---FVDLWKES--TAFHI-----FIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+ V+++ E+ F I I + L+G G+ K E AA+ AL
Sbjct: 170 SLPTYFIVEVYGEAHNQLFTIHCKISIISEYLIGTGSSRRKAE---QDAAQKAL 220
>gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832, partial [Schizophyllum
commune H4-8]
Length = 1489
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+ ++G + N LL A T + +YER+E++GD++L+ + + + Y PP
Sbjct: 1217 QSVIGQKLNKPELLALALTHANNSSPLGNYERIEFLGDALLDFQVVEYVYRKYTQQPPSV 1276
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI------------REFSEAILDY 178
LT L+SA V LA + + GL+++L +++ I +E++ A D
Sbjct: 1277 LTLLKSAMVGNSPLAAICAESGLYRHLHQKSHQIQQSINTYLTALQKAKQKEYAAADDDL 1336
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETLKTH 234
DA L+DIVES +GA++I + V ++FK L+P I TL H
Sbjct: 1337 RERGQYWFDA---LSDIVESIVGAIYISDDLEWTGVQQLFKHFLQPFYEKHIRMNTLAVH 1393
Query: 235 PVTELYEVCQKN 246
P L E+ Q
Sbjct: 1394 PTKILLELVQSQ 1405
>gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
Length = 224
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 100/180 (55%), Gaps = 25/180 (13%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
D ++ LGY F+N+NLL+EA T S + + ERLE++GD+VL+L++ + + +P+ P
Sbjct: 5 DFQQYLGYHFSNQNLLQEALTHKSAKKSTHN-ERLEFLGDAVLDLIIGEFLYKKFPHSPE 63
Query: 129 GSLTRLRSANVNTEKLARVA--IKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G L+++R++ VN + A++A + +G + Y+ H+ EEQ +NG
Sbjct: 64 GELSKMRASMVNEKAFAKIARYLNIGEYLYISHS----EEQ--------------NNG-R 104
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
+ +L++ E+ +GA++++ IV K+ ++L P I E L T L E+ Q
Sbjct: 105 EKDSILSNAFEAIVGAIYLESGLEKVQTIVLKIL-DILYPKIDLENLFYDYKTSLQELTQ 163
>gi|392541348|ref|ZP_10288485.1| RNase III, ds RNA [Pseudoalteromonas piscicida JCM 20779]
gi|409202181|ref|ZP_11230384.1| RNase III, ds RNA [Pseudoalteromonas flavipulchra JG1]
Length = 225
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F++K LLE+A T S + ERLE++GDS+L+ ++ + +P G L+R
Sbjct: 12 IGYNFSDKALLEQALTHRS--HKGQHNERLEFLGDSILSFVIANALYHKFPKAREGDLSR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V + LA ++ L YLR L+ +G LA
Sbjct: 70 MRSTLVRGQTLAEFGVEFALGDYLRLGPGELK-----------------SGGFRRESTLA 112
Query: 194 DIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
D VE+ IGAVF+D + + D+V ++ L ISP + P T L E Q KL
Sbjct: 113 DAVEAIIGAVFLDSDIDVCRDLVLSWYESRL-TAISPGHNQKDPKTLLQEYLQARKL 168
>gi|354558634|ref|ZP_08977888.1| Ribonuclease 3 [Desulfitobacterium metallireducens DSM 15288]
gi|353545696|gb|EHC15146.1| Ribonuclease 3 [Desulfitobacterium metallireducens DSM 15288]
Length = 263
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 28/203 (13%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
+RLE++GD++L+ ++ + + YP P G LT++R+A VN LAR+A K+ L K L
Sbjct: 74 QRLEFLGDAILDFVIAEYLYLKYPERPEGELTKMRAAVVNESTLARIAQKIELGKELLLG 133
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
K EQ+ +G + P +LAD VES IGA+++ + +V +
Sbjct: 134 KG---EQV--------------SGGRERPSILADAVESVIGAIYLQY--GLQEARRVILD 174
Query: 221 LLKPMISPETLKTHP--VTELYEVCQKNKLKVKFVDLWKEST------AFHIFIEDQLLG 272
LL P I + T L E Q ++ +V + L +E +F++ +L G
Sbjct: 175 LLTPEIEEVAQGNYGDYKTTLQEKAQHDESEVSYQILAEEGPDHNKRFTAGVFLKGKLRG 234
Query: 273 RGAYAPKKEIAHNRAAKDALNNI 295
+G KKE A +AA+ L +
Sbjct: 235 QGVGRTKKE-AEQKAAQQVLEEL 256
>gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 279
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 33/237 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+E+LGYRF++++ L A T PS E FSYERLE++GDS+L ++ F +P+L
Sbjct: 15 QEVLGYRFSDEHFLLSAITHPSAVEGMPVKFSYERLEFLGDSILGAVVADAAFHRFPDLD 74
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD-YPLHSNGLV 186
G LTR++ + V L++VA +LG ++ I SEA LHS
Sbjct: 75 EGGLTRIKVSLVAGSSLSQVANELGFADFI----------IFGQSEAGTGRRGLHS---- 120
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM-ISPETLKTHPVTELYEVCQK 245
L ++ E+ + A+++D + + + + LL M I +P + L E Q+
Sbjct: 121 ----ALENVYEAVVAALYLDGGMEVARSF-IVQTLLGYMSIDMAREPENPKSALQEKLQE 175
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ + + L + H ++ Q L RG KKE A ++AA+ AL+++
Sbjct: 176 DGITPTY-KLIETQGPPHDRTFVAAVYAGLQALARGVGRTKKE-AESKAAQTALSHL 230
>gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|29427422|sp|P59476.1|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 226
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ILGY F K+LL +A T S + ERLE++GDS+L+ ++ + +P++ G
Sbjct: 10 QKILGYTFIKKDLLIQALTHRSANSK--HNERLEFLGDSILSFVIANALYHCFPHVNEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++R+R+ V LA++A + L YL+ + L+ +G
Sbjct: 68 MSRMRATLVRGHTLAKIAYEFDLGDYLQLGQGELK-----------------SGGFRRES 110
Query: 191 VLADIVESTIGAVFIDCN-SSID-IVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LA+ VE+ IG++F+D N +I+ ++ K +K LK I+P + P T L E Q L
Sbjct: 111 ILANTVEALIGSIFLDSNLKTIEKLILKWYKNRLKA-INPSDTQKDPKTRLQEYLQSKHL 169
>gi|406589966|ref|ZP_11064377.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
gi|404470038|gb|EKA14718.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
Length = 220
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 35/218 (16%)
Query: 78 FNNKNLLEEAFTDPSCPE-----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
F++ NLLE+AFT S + ERLE++GD+VL L++++ F LYP+LP G LT
Sbjct: 9 FHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLPEGKLT 68
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
+ R+A V + L++ A + +Y+ +L ++G P +L
Sbjct: 69 KTRAAIVREDSLSKFAKECHFDQYV-----------------LLGKGEENSGGRTRPALL 111
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKNK-L 248
D+ E+ +GA+++D D ++++ P + +H + T+L EV QK+ +
Sbjct: 112 CDLFEAFLGALYLD--QGFDTTHAFIEKVIFPKVKAGAF-SHEMDHKTKLQEVLQKSGDV 168
Query: 249 KVKFVDLWKESTA------FHIFIEDQLLGRGAYAPKK 280
+++ + +E A ++++DQL+G G KK
Sbjct: 169 SIEYRLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 206
>gi|334135564|ref|ZP_08509048.1| ribonuclease III [Paenibacillus sp. HGF7]
gi|333606900|gb|EGL18230.1| ribonuclease III [Paenibacillus sp. HGF7]
Length = 233
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 34/233 (14%)
Query: 77 RFNNKNLLEEAFTDPSC--PERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
RF + +LL +AFT S R +Y ERLE++GD+VL L +++ +F YP+ G L
Sbjct: 15 RFQDLDLLRQAFTHSSYVNEHRMANYQDNERLEFLGDAVLELTVSEYLYFKYPHRTEGEL 74
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
T+LR++ V L A KL Y++ K EE G P +
Sbjct: 75 TKLRASIVCEPSLVNFAEKLNFGSYVQLGKG--EEM---------------TGGRSRPAL 117
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPVTELYEVCQKNKLK 249
LAD+ ES IGA+++D ++ V ++ + P +S E L T+L E Q + +
Sbjct: 118 LADVFESFIGALYLD--QGLEAVKLFLQQHVFPYVSAEGKLLVIDYKTQLQEHTQHHNMG 175
Query: 250 VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ +E H ++++ + LG+GA KKE A +AA AL +
Sbjct: 176 ALEYRIVEERGPAHEREFVAEVYMDAKQLGKGAGRSKKE-AEQQAASQALTKL 227
>gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330]
gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082]
gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|389867284|ref|YP_006374707.1| ribonuclease III [Enterococcus faecium DO]
gi|424763790|ref|ZP_18191255.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|424791403|ref|ZP_18217835.1| ribonuclease III [Enterococcus faecium V689]
gi|424797447|ref|ZP_18223031.1| ribonuclease III [Enterococcus faecium S447]
gi|424828237|ref|ZP_18252973.1| ribonuclease III [Enterococcus faecium R501]
gi|424854841|ref|ZP_18279184.1| ribonuclease III [Enterococcus faecium R499]
gi|424869418|ref|ZP_18293122.1| ribonuclease III [Enterococcus faecium R497]
gi|424950205|ref|ZP_18365376.1| ribonuclease III [Enterococcus faecium R496]
gi|424954344|ref|ZP_18369246.1| ribonuclease III [Enterococcus faecium R494]
gi|424958431|ref|ZP_18373077.1| ribonuclease III [Enterococcus faecium R446]
gi|424960282|ref|ZP_18374813.1| ribonuclease III [Enterococcus faecium P1986]
gi|424965596|ref|ZP_18379547.1| ribonuclease III [Enterococcus faecium P1190]
gi|424969514|ref|ZP_18383084.1| ribonuclease III [Enterococcus faecium P1140]
gi|424970489|ref|ZP_18383998.1| ribonuclease III [Enterococcus faecium P1139]
gi|424974109|ref|ZP_18387361.1| ribonuclease III [Enterococcus faecium P1137]
gi|424976652|ref|ZP_18389725.1| ribonuclease III [Enterococcus faecium P1123]
gi|424981080|ref|ZP_18393833.1| ribonuclease III [Enterococcus faecium ERV99]
gi|424984594|ref|ZP_18397122.1| ribonuclease III [Enterococcus faecium ERV69]
gi|424987454|ref|ZP_18399829.1| ribonuclease III [Enterococcus faecium ERV38]
gi|424990906|ref|ZP_18403096.1| ribonuclease III [Enterococcus faecium ERV26]
gi|424994563|ref|ZP_18406498.1| ribonuclease III [Enterococcus faecium ERV168]
gi|424997392|ref|ZP_18409155.1| ribonuclease III [Enterococcus faecium ERV165]
gi|425001410|ref|ZP_18412929.1| ribonuclease III [Enterococcus faecium ERV161]
gi|425003989|ref|ZP_18415319.1| ribonuclease III [Enterococcus faecium ERV102]
gi|425006908|ref|ZP_18418063.1| ribonuclease III [Enterococcus faecium ERV1]
gi|425010840|ref|ZP_18421771.1| ribonuclease III [Enterococcus faecium E422]
gi|425014158|ref|ZP_18424853.1| ribonuclease III [Enterococcus faecium E417]
gi|425017866|ref|ZP_18428347.1| ribonuclease III [Enterococcus faecium C621]
gi|425020875|ref|ZP_18431162.1| ribonuclease III [Enterococcus faecium C497]
gi|425030492|ref|ZP_18435665.1| ribonuclease III [Enterococcus faecium C1904]
gi|425032631|ref|ZP_18437657.1| ribonuclease III [Enterococcus faecium 515]
gi|425035582|ref|ZP_18440417.1| ribonuclease III [Enterococcus faecium 514]
gi|425037922|ref|ZP_18442559.1| ribonuclease III [Enterococcus faecium 513]
gi|425041759|ref|ZP_18446142.1| ribonuclease III [Enterococcus faecium 511]
gi|425045378|ref|ZP_18449484.1| ribonuclease III [Enterococcus faecium 510]
gi|425048552|ref|ZP_18452452.1| ribonuclease III [Enterococcus faecium 509]
gi|425051643|ref|ZP_18455300.1| ribonuclease III [Enterococcus faecium 506]
gi|425054205|ref|ZP_18457718.1| ribonuclease III [Enterococcus faecium 505]
gi|425058185|ref|ZP_18461576.1| ribonuclease III [Enterococcus faecium 504]
gi|425060584|ref|ZP_18463875.1| ribonuclease III [Enterococcus faecium 503]
gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330]
gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082]
gi|388532533|gb|AFK57725.1| ribonuclease III [Enterococcus faecium DO]
gi|402421966|gb|EJV54209.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|402919418|gb|EJX40018.1| ribonuclease III [Enterococcus faecium V689]
gi|402921003|gb|EJX41473.1| ribonuclease III [Enterococcus faecium S447]
gi|402922876|gb|EJX43220.1| ribonuclease III [Enterococcus faecium R501]
gi|402932233|gb|EJX51763.1| ribonuclease III [Enterococcus faecium R499]
gi|402933494|gb|EJX52920.1| ribonuclease III [Enterococcus faecium R496]
gi|402935590|gb|EJX54830.1| ribonuclease III [Enterococcus faecium R497]
gi|402936978|gb|EJX56122.1| ribonuclease III [Enterococcus faecium R494]
gi|402940215|gb|EJX59069.1| ribonuclease III [Enterococcus faecium R446]
gi|402943291|gb|EJX61787.1| ribonuclease III [Enterococcus faecium P1190]
gi|402948361|gb|EJX66507.1| ribonuclease III [Enterococcus faecium P1986]
gi|402948484|gb|EJX66621.1| ribonuclease III [Enterococcus faecium P1140]
gi|402957456|gb|EJX74847.1| ribonuclease III [Enterococcus faecium P1137]
gi|402961653|gb|EJX78665.1| ribonuclease III [Enterococcus faecium P1139]
gi|402964694|gb|EJX81462.1| ribonuclease III [Enterococcus faecium ERV99]
gi|402968541|gb|EJX85020.1| ribonuclease III [Enterococcus faecium ERV69]
gi|402968950|gb|EJX85399.1| ribonuclease III [Enterococcus faecium P1123]
gi|402974331|gb|EJX90387.1| ribonuclease III [Enterococcus faecium ERV38]
gi|402978365|gb|EJX94109.1| ribonuclease III [Enterococcus faecium ERV26]
gi|402979859|gb|EJX95504.1| ribonuclease III [Enterococcus faecium ERV168]
gi|402986368|gb|EJY01496.1| ribonuclease III [Enterococcus faecium ERV165]
gi|402986862|gb|EJY01966.1| ribonuclease III [Enterococcus faecium ERV161]
gi|402990642|gb|EJY05507.1| ribonuclease III [Enterococcus faecium ERV102]
gi|402996112|gb|EJY10515.1| ribonuclease III [Enterococcus faecium ERV1]
gi|402998652|gb|EJY12898.1| ribonuclease III [Enterococcus faecium E422]
gi|402999508|gb|EJY13695.1| ribonuclease III [Enterococcus faecium E417]
gi|403002725|gb|EJY16671.1| ribonuclease III [Enterococcus faecium C1904]
gi|403003493|gb|EJY17390.1| ribonuclease III [Enterococcus faecium C621]
gi|403008053|gb|EJY21582.1| ribonuclease III [Enterococcus faecium C497]
gi|403012388|gb|EJY25615.1| ribonuclease III [Enterococcus faecium 515]
gi|403017688|gb|EJY30416.1| ribonuclease III [Enterococcus faecium 514]
gi|403020703|gb|EJY33211.1| ribonuclease III [Enterococcus faecium 513]
gi|403025540|gb|EJY37618.1| ribonuclease III [Enterococcus faecium 511]
gi|403027144|gb|EJY39053.1| ribonuclease III [Enterococcus faecium 510]
gi|403030483|gb|EJY42166.1| ribonuclease III [Enterococcus faecium 509]
gi|403036473|gb|EJY47821.1| ribonuclease III [Enterococcus faecium 505]
gi|403037263|gb|EJY48563.1| ribonuclease III [Enterococcus faecium 506]
gi|403038979|gb|EJY50160.1| ribonuclease III [Enterococcus faecium 504]
gi|403042468|gb|EJY53418.1| ribonuclease III [Enterococcus faecium 503]
Length = 231
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 35/218 (16%)
Query: 78 FNNKNLLEEAFTDPSCPE-----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
F++ NLLE+AFT S + ERLE++GD+VL L++++ F LYP+LP G LT
Sbjct: 20 FHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLPEGKLT 79
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
+ R+A V + L++ A + +Y+ +L ++G P +L
Sbjct: 80 KTRAAIVREDSLSKFAKECHFDQYV-----------------LLGKGEENSGGRTRPALL 122
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKNK-L 248
D+ E+ +GA+++D D ++++ P + +H + T+L EV QK+ +
Sbjct: 123 CDLFEAFLGALYLD--QGFDTTHAFIEKVIFPKVKAGAF-SHEMDHKTKLQEVLQKSGDV 179
Query: 249 KVKFVDLWKESTA------FHIFIEDQLLGRGAYAPKK 280
+++ + +E A ++++DQL+G G KK
Sbjct: 180 SIEYRLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 217
>gi|359440809|ref|ZP_09230722.1| ribonuclease III [Pseudoalteromonas sp. BSi20429]
gi|392533274|ref|ZP_10280411.1| RNase III, ds RNA [Pseudoalteromonas arctica A 37-1-2]
gi|358037515|dbj|GAA66971.1| ribonuclease III [Pseudoalteromonas sp. BSi20429]
Length = 225
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F ++ LLE+A T S + ERLE++GDS+L+ ++ + +P G L+R
Sbjct: 12 IGYEFADQGLLEQAMTHRS--HKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDLSR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V + LA ++ GL YLR L+ +G LA
Sbjct: 70 MRSTLVRGQTLAEFGLEFGLGDYLRLGPGELK-----------------SGGFRRESTLA 112
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA F+D +S D++ ++ L ISP + P T L E Q KL +
Sbjct: 113 DAVEAIIGAAFLDSGIDSCGDLILAWYQSRLDA-ISPGLNQKDPKTLLQEYLQARKLSL 170
>gi|416156636|ref|ZP_11604675.1| ribonuclease III [Moraxella catarrhalis 101P30B1]
gi|416225814|ref|ZP_11626993.1| ribonuclease III [Moraxella catarrhalis 103P14B1]
gi|416233905|ref|ZP_11629503.1| ribonuclease III [Moraxella catarrhalis 12P80B1]
gi|416245733|ref|ZP_11634652.1| ribonuclease III [Moraxella catarrhalis BC8]
gi|416256350|ref|ZP_11639661.1| ribonuclease III [Moraxella catarrhalis O35E]
gi|326560591|gb|EGE10972.1| ribonuclease III [Moraxella catarrhalis 103P14B1]
gi|326565582|gb|EGE15745.1| ribonuclease III [Moraxella catarrhalis 12P80B1]
gi|326572025|gb|EGE22027.1| ribonuclease III [Moraxella catarrhalis BC8]
gi|326573972|gb|EGE23922.1| ribonuclease III [Moraxella catarrhalis O35E]
gi|326574964|gb|EGE24894.1| ribonuclease III [Moraxella catarrhalis 101P30B1]
Length = 262
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 41/244 (16%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
LGY F + +LL A T S P++ SYERLE++GD++L+ ++TK F YP G LT
Sbjct: 39 LGYTFKDVSLLCRALTHRSYDPKK--SYERLEFLGDALLSSIITKALFAQYPKHDEGKLT 96
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
R+R+A V E L ++A L L ++L IL G +L
Sbjct: 97 RMRAALVRQETLVQIADHLELSRHL-----------------ILGVGERKGGGRHRASIL 139
Query: 193 ADIVESTIGAVFID-CNSSID-----IVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
AD VE+ I AV++D NS + +V +K+L++ + + LK + L E+ Q N
Sbjct: 140 ADAVEALIAAVYLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAK-SRLQELLQGN 198
Query: 247 KLKVKFVDLWKE--STAFHIFI---------EDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L + +L + S +F+ D ++ GA + IA + A+ +N +
Sbjct: 199 RLPLPTYELIQTLGSAPNQVFVVRCHCTVVGVDPIIETGA---SRRIAEQKCAERMINQL 255
Query: 296 ERLL 299
+LL
Sbjct: 256 NKLL 259
>gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23]
Length = 1476
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP--ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
+GY F + LL AF PS P +Y+RLE++GD++L++ + F YP P L
Sbjct: 1204 IGYNFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFQRYPLADPQWL 1263
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI-------------LDY 178
T + A + + + ++LGLH+++ + I F E I LD+
Sbjct: 1264 TEHKMAMASNHFFSFLCVELGLHRHILSTGSSIMGHIAGFVEQIEKAKSQTEDGVLQLDF 1323
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KT 233
L++ PK L+DI+E+ +GA++ D + V F + + P TL
Sbjct: 1324 WLNTE---HPPKALSDILEAVVGAMYEDSKYDYNSVRNFFTKFIAPYFQDMTLYDTYAGG 1380
Query: 234 HPVTELYEVCQ 244
HPVT+L ++ Q
Sbjct: 1381 HPVTQLTKLMQ 1391
>gi|88858204|ref|ZP_01132846.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
gi|88819821|gb|EAR29634.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
Length = 225
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 87/189 (46%), Gaps = 26/189 (13%)
Query: 64 NANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLY 123
N N D +GY FNN LLE+A T S + ERLE++GDS+L+ ++ E + +
Sbjct: 2 NKNVTDLYTKIGYTFNNVALLEQAMTHRSHKGQH--NERLEFLGDSILSFVIANELYKRF 59
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
P G L+R+RS V + LA ++ L YLR L+ +
Sbjct: 60 PKSREGDLSRMRSTLVRGQTLAEFGLEFNLGDYLRLGPGELK-----------------S 102
Query: 184 GLVDAPKVLADIVESTIGAVF----IDCNSSIDIVWKVFKELLKPMISPETLKTHPVTEL 239
G LAD VE+ IGAVF ID S++ + W F+ ISP + P T L
Sbjct: 103 GGYRRESTLADAVEAIIGAVFLDSGIDTCSNLILSWYKFR---LDEISPGLNQKDPKTLL 159
Query: 240 YEVCQKNKL 248
E Q KL
Sbjct: 160 QEYLQARKL 168
>gi|405983301|ref|ZP_11041611.1| ribonuclease III [Slackia piriformis YIT 12062]
gi|404389309|gb|EJZ84386.1| ribonuclease III [Slackia piriformis YIT 12062]
Length = 258
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 31/236 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+ I+G F++ ++L A T PS E FSYERLE++GDS+L ++ E F YP L
Sbjct: 15 QRIIGRDFDDPDILLSAITHPSATEGKPVKFSYERLEFLGDSILGAIVANEAFHEYPELD 74
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTR++ A V+ LA VA KLG + + G
Sbjct: 75 EGGLTRIKVALVSGTSLAEVAEKLGFADVI-----------------VFGSSERGTGRRG 117
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQK 245
L ++ E+ + A+F+D S I + L P +S E + +P + L E Q+
Sbjct: 118 LHSALENVYEAVVAALFLD--SGIAGAQAFVRRTLIPKMSVEMAREPENPKSALQEKLQE 175
Query: 246 NKL--KVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ K V+ + +F + L G KKE A ++AAK AL+ +
Sbjct: 176 EGITPTYKLVETQGPPHDRTFVSQVFAGMKALASGMGRTKKE-AESQAAKTALDAL 230
>gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1]
gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1]
Length = 304
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 31/236 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+EILGYRF ++ LL A T PS E +SYERLE++GDS+L ++ F + +L
Sbjct: 38 QEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDRFHDLD 97
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTR++ A V+ L+ VA +LG + R LHS
Sbjct: 98 EGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRG---------LHS----- 143
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQK 245
L ++ E+ + A+F+D I+ + L P +S + + +P + L E Q+
Sbjct: 144 ---ALENVYEAVVAALFLDGG--IEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQE 198
Query: 246 NKL--KVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ + K V+ + +F Q L RG KKE A ++AAK L +
Sbjct: 199 DGITPTYKLVETQGPPHDRTFVAQVFAGSQGLARGTGRTKKE-AESQAAKSTLARL 253
>gi|23098981|ref|NP_692447.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
gi|38372423|sp|Q8ER05.1|RNC_OCEIH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|22777209|dbj|BAC13482.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
Length = 228
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 42/243 (17%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
EE LG F K LL+EAFT S +R ERLE++GD+VL L +++ +LY N
Sbjct: 7 EEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQ---YLYRN 63
Query: 126 ---LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
+P G +T+LR+A V L A +L K+LR K E+Q
Sbjct: 64 NKDMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKG--EQQ--------------- 106
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TEL 239
G + P +LAD E+ +GA+++D D V + P ++ +H + ++L
Sbjct: 107 TGGRERPAILADAFEAFLGALYLD--QGFDNVLDFLNIHVFPKLTTGAF-SHAMDYKSQL 163
Query: 240 YEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
E Q++K + + +E H + I+++ G G KKE A RAAK+AL
Sbjct: 164 QEFVQQHKDQKIEYRIIEEKGPSHNKEFVAEVVIQEKAAGIGTGRTKKE-AEQRAAKNAL 222
Query: 293 NNI 295
++I
Sbjct: 223 DSI 225
>gi|451344225|ref|ZP_21913285.1| ribonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
gi|449336939|gb|EMD16107.1| ribonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
Length = 232
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 108/229 (47%), Gaps = 34/229 (14%)
Query: 78 FNNKNLLEEAFTDPS----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
F++ ++AFT S + YERLE++GD+VL L +++ F YP+ P G LT
Sbjct: 14 FHSLKYYKQAFTHSSYANEAQNKLEDYERLEFMGDAVLQLFVSEYLFKSYPDYPEGELTT 73
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LRS V E LA+ A +L LEE I L +G D VL
Sbjct: 74 LRSKLVREESLAKFAREL-----------RLEELI------YLGVGEEKSGGRDRDSVLC 116
Query: 194 DIVESTIGAVFIDCNSS--IDIVWK-VFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
DI ES +GA+++DC I I+ K +FK + S E + T+L E+ Q + +
Sbjct: 117 DIFESFVGALYLDCGKKEVIKILHKTIFKHVDDVFHSEEIIDYK--TKLQELIQADDRRS 174
Query: 251 KFVDLWKEST-------AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
L E+ ++ ++ +LG G KK+ A ++AKDAL
Sbjct: 175 VTYKLIAETGPANAPEFTINVTLDGMVLGTGKGTSKKK-AEQQSAKDAL 222
>gi|406927413|gb|EKD63451.1| hypothetical protein ACD_51C00278G0004 [uncultured bacterium]
Length = 239
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 29/233 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E+++G +F +++LL++AF S E ERLE++GD+VL L++T+ + Y N
Sbjct: 8 EKLIGIKFKDEHLLDQAFIHKSYVNEASEDKEHNERLEFLGDAVLELVVTEFLYKTYKN- 66
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS-------EAILDYP 179
P G LT RSA V LA +A KLGL+KYL + + RE EA++
Sbjct: 67 PEGDLTNWRSALVRGANLAEIAKKLGLNKYLYLGRGEEKSGGREKGYILANTVEALIGAI 126
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTEL 239
G DA K + + +G + ++ S ID K F+E IS PV +L
Sbjct: 127 YLDKGYKDAHKFITKFIVCYLGEI-LEKGSYIDSKSK-FQE-----ISQSKFNITPVYQL 179
Query: 240 YEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
E + K S ++I D++ G G+ + K++ N AA DAL
Sbjct: 180 IEESGPDHDK---------SFKMGVYIGDKMYGEGSGSSKQQAEQN-AAGDAL 222
>gi|296113914|ref|YP_003627852.1| ribonuclease III [Moraxella catarrhalis RH4]
gi|295921608|gb|ADG61959.1| ribonuclease III [Moraxella catarrhalis BBH18]
Length = 266
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 41/244 (16%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
LGY F + +LL A T S P++ SYERLE++GD++L+ ++TK F YP G LT
Sbjct: 43 LGYTFKDVSLLCRALTHRSYDPKK--SYERLEFLGDALLSSIITKALFAQYPKHDEGKLT 100
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
R+R+A V E L ++A L L ++L IL G +L
Sbjct: 101 RMRAALVRQETLVQIADHLELSRHL-----------------ILGVGERKGGGRHRASIL 143
Query: 193 ADIVESTIGAVFID-CNSSID-----IVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
AD VE+ I AV++D NS + +V +K+L++ + + LK + L E+ Q N
Sbjct: 144 ADAVEALIAAVYLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAK-SRLQELLQGN 202
Query: 247 KLKVKFVDLWKE--STAFHIFI---------EDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L + +L + S +F+ D ++ GA + IA + A+ +N +
Sbjct: 203 RLPLPTYELIQTLGSAPNQVFVVRCHCTVVGVDPIIETGA---SRRIAEQKCAERMINQL 259
Query: 296 ERLL 299
+LL
Sbjct: 260 NKLL 263
>gi|188589361|ref|YP_001920585.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|251778911|ref|ZP_04821831.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|238689672|sp|B2V4D6.1|RNC_CLOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|188499642|gb|ACD52778.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|243083226|gb|EES49116.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 232
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 116/241 (48%), Gaps = 31/241 (12%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPN 125
D E LG FNN +L++ A T S +F ERLE++GDSVL L +T+ F + +
Sbjct: 8 DIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEYLFNKFKD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G LT++RS V L +A KL L +Y+R +K E++ G
Sbjct: 68 KSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKG---EEL--------------TGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ + AD VE+ I AV++D D + F+E++ I+ E + T+L E+
Sbjct: 111 RERMSIQADAVEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFK-TKLQELL 169
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
QK+ + +L K H + I ++++G G KKE N AAK+AL +E
Sbjct: 170 QKDGEILIQYELLKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQN-AAKEALKRLE 228
Query: 297 R 297
+
Sbjct: 229 K 229
>gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03]
Length = 1415
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 53/265 (20%)
Query: 60 ESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQ 119
E+LP++ D E ++GY FN K L +AFT PS P SY+RLE++GDS+L+ ++
Sbjct: 1121 ENLPSSWFRDIESLVGYIFNKKVFLAQAFTHPSNPGSTMSYQRLEFLGDSILDHIIVDHI 1180
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAI--------------------------KLGL 153
F N + +R++ N + LA + I K+ L
Sbjct: 1181 FNSPRNFQHVDMHLMRASLANADFLAFLCIGMTTEEERGEIVEASRNGTFTRMTTRKISL 1240
Query: 154 HKYLRHNKPL-----LEEQIREFSEAILD----------YPLHSNGLVDAPKVLADIVES 198
+Y+RH ++ + ++ D YP + A K +D++ES
Sbjct: 1241 WQYMRHGTSWELTVSQQQTVNQYQALKADITKALYESDTYPWALLSRLRAQKFFSDLIES 1300
Query: 199 TIGAVFIDCNSSIDIVWKVFKEL-----LKPMISPETLKTHPVTELYEVCQKNKLKVKFV 253
+GA+FID + S+D + + L+ ++ E HP L E+ + +++ + V
Sbjct: 1301 VLGAIFIDSHGSLDACAAFLERIGLMNFLRRILQDEIDIMHPKQRLGEMVGQMQVRYETV 1360
Query: 254 DLWKESTA-------FHIFIEDQLL 271
+ +E +F++D+ +
Sbjct: 1361 HVVEEEGGDALGHWTCKVFVDDECV 1385
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 27/154 (17%)
Query: 78 FNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSA 137
F + NL+ A P E +Y+R+E++GDS+L + + P G L+ +
Sbjct: 957 FTDLNLVITALCAPDAREAT-NYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDE 1015
Query: 138 NVNTEKLARVAIKLGLHKYL------------RHNKPLLEEQIREFSEAILDYPLHSNGL 185
V+ ++L+ AI+ GL K++ R+NK +EEQ D P
Sbjct: 1016 VVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAHVEEQ---------DIPRREM-- 1064
Query: 186 VDAPKVLADIVESTIGAVFIDCN-SSIDIVWKVF 218
+ K LAD++E+ +GA ID + ++ K+F
Sbjct: 1065 --STKTLADVIEALLGAATIDGGRTKVEKCLKIF 1096
>gi|392545908|ref|ZP_10293045.1| RNase III, ds RNA [Pseudoalteromonas rubra ATCC 29570]
Length = 225
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F +++LLE+A T S + ERLE++GDS+L+ ++ + +P G L+R
Sbjct: 12 IGYEFTDQSLLEQAMTHRS--HKGQHNERLEFLGDSILSFVIANALYKQFPKAREGDLSR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V + LA ++ GL YLR L+ +G LA
Sbjct: 70 MRSTLVRGQTLAEFGVEFGLGDYLRLGPGELK-----------------SGGYRRESTLA 112
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
D VE+ IGAVF+D + + +V K + L ISP + P T L E Q KL
Sbjct: 113 DAVEAIIGAVFLDSDIETCKTLVLKWYDSRL-AAISPGHNQKDPKTLLQEYLQARKL 168
>gi|384937826|ref|ZP_10029520.1| ribonuclease III [Mycoplasma canis UF31]
gi|419704499|ref|ZP_14232045.1| ribonuclease III [Mycoplasma canis UF33]
gi|419705145|ref|ZP_14232685.1| ribonuclease III [Mycoplasma canis UFG1]
gi|419705796|ref|ZP_14233329.1| ribonuclease III [Mycoplasma canis UFG4]
gi|384393947|gb|EIE40394.1| ribonuclease III [Mycoplasma canis UF31]
gi|384394233|gb|EIE40678.1| ribonuclease III [Mycoplasma canis UF33]
gi|384395530|gb|EIE41960.1| ribonuclease III [Mycoplasma canis UFG1]
gi|384395728|gb|EIE42156.1| ribonuclease III [Mycoplasma canis UFG4]
Length = 228
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 31/225 (13%)
Query: 79 NNKNLLEEAFTDPSC---PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLR 135
NN ++ +A T S + F+YE+LE++GDS+L+ +++ F+ G LTR R
Sbjct: 20 NNLDVFYQATTHKSFNGHEGKTFNYEKLEFLGDSILDFVVSSYIFYKNKESSQGELTRYR 79
Query: 136 SANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADI 195
S+ V TE L+ ++ K+GL K LR + E++ +++ KV ADI
Sbjct: 80 SSIVQTETLSEISKKIGLLKLLRTGPGQMHEEV-----------------IESTKVQADI 122
Query: 196 VESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE-----TLKTHPVTELYEVCQK-NKLK 249
E+ IGA+F+D + V K +E L I+ T P TEL E Q ++
Sbjct: 123 FEAMIGAIFVD--QGLIKVKKFIEEHLLSKINENNDLFITDSKDPKTELQEHFQSFSREN 180
Query: 250 VKFVDLWKESTAFHI-FIEDQLL-GRGAYAPKKEIAHNRAAKDAL 292
+ ++ K + F + D+++ G G + KKE A AAK+AL
Sbjct: 181 ISYIVEEKGNKLFEAKAVHDKIVYGVGQGSSKKE-AETNAAKNAL 224
>gi|337280491|ref|YP_004619963.1| ribonuclease III (RNase III) [Ramlibacter tataouinensis TTB310]
gi|334731568|gb|AEG93944.1| candidate ribonuclease III (RNase III) [Ramlibacter tataouinensis
TTB310]
Length = 230
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 30/199 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQFFLYPNLP 127
+E L +RF + LL A T R FS E RLE++GDSVLNL + + +LP
Sbjct: 12 QERLQHRFQDPRLLALALT-----HRSFSAEHNERLEFLGDSVLNLAVAGLLYERLKDLP 66
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G L+R+R+ V + L ++A++LGL + +R L E +IR +G
Sbjct: 67 EGELSRVRANLVKQDTLHQLAVRLGLPEVIR----LGEGEIR-------------SGGSK 109
Query: 188 APKVLADIVESTIGAVFIDCN--SSIDIVWKVFKEL-LKPMISPETLKTHPVTELYEVCQ 244
P +LAD +E+ +GAV +D ++ +V ++F+++ ++P + + P TEL E Q
Sbjct: 110 RPSILADALEAVVGAVHLDAGYAAAESLVRRLFQDVDIRPEM--KAAAKDPKTELQEWLQ 167
Query: 245 KNKLKVKFVDLWKESTAFH 263
KLK+ + A H
Sbjct: 168 GRKLKLPVYRVAGTLGAAH 186
>gi|339053279|ref|ZP_08648023.1| Ribonuclease III [gamma proteobacterium IMCC2047]
gi|330721516|gb|EGG99556.1| Ribonuclease III [gamma proteobacterium IMCC2047]
Length = 210
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+F +++LL+ A T S + ERLE++GDS+L ++ F +P+ G L+R
Sbjct: 12 LGYQFRDESLLQTALTHSSFGQG--HNERLEFLGDSILGWVIADALFKRFPHAREGQLSR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V LA+VA +L L YLR + ++ +G +LA
Sbjct: 70 LRAGLVKGVTLAKVARELQLGHYLRLGQGEMK-----------------SGGFRRDSILA 112
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
D E+ IGA+F+D + + I+ +F L +TLK P T L E Q K
Sbjct: 113 DAFEAIIGAIFLDSDIATCQQIILVLFAGRLDAQTLDDTLK-DPKTRLQEFLQSRK 167
>gi|392988132|ref|YP_006486725.1| ribonuclease III [Enterococcus hirae ATCC 9790]
gi|392335552|gb|AFM69834.1| ribonuclease III [Enterococcus hirae ATCC 9790]
Length = 228
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 35/218 (16%)
Query: 78 FNNKNLLEEAFTDPSCPE-----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
F++ NLLE+AFT S + ERLE++GD+VL L++++ + LYP++P G LT
Sbjct: 17 FHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSEYLYRLYPDIPEGKLT 76
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
+ R+A V + L++ A + G KY+ +L ++G P +L
Sbjct: 77 KTRAAIVREDSLSKFAKECGFDKYI-----------------MLGKGEENSGGRTRPALL 119
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKNKLK 249
D+ E+ +GA+++D + + ++ P + +H + T+L EV QK+
Sbjct: 120 CDLFEAFLGALYLD--QGFEAAHAFLQTVVFPKVKAGAF-SHEMDHKTKLQEVLQKSGDV 176
Query: 250 VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
L KE H ++++D+L+G G KK
Sbjct: 177 FIEYRLIKEEGPAHERIFWIEVYVDDKLIGTGQGKSKK 214
>gi|328767757|gb|EGF77805.1| hypothetical protein BATDEDRAFT_27056 [Batrachochytrium
dendrobatidis JAM81]
Length = 380
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 38/222 (17%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
++RLE++GD+VL+ L+ + + + P L PG L++L + V + LA V+I++GL KY+RH
Sbjct: 61 FQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQIGLVKYIRH 120
Query: 160 NKPLLEEQIREFSEAILDY---------PLHSNGLV------------DAPKVLADIVES 198
+E I F+ + Y P+ ++ APK D+ ES
Sbjct: 121 TDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAPKTAGDVYES 180
Query: 199 TIGAVFIDCNSSIDIVWKVFK-ELLKP-------MISPETL-KTHPVTEL----YEVCQK 245
+GAVF+D I V +F ++ P + E++ +PV EL Y + +
Sbjct: 181 MLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELRTLSYSLFKC 240
Query: 246 NKLKVKF-VDLWKESTA---FHIFIEDQLLGRGAYAPKKEIA 283
K+ + L +TA +H + Q LG G KK A
Sbjct: 241 VKIDYTYEYGLHGGTTATITYHNMVLAQCLGTGQRDAKKAAA 282
>gi|390598592|gb|EIN07990.1| hypothetical protein PUNSTDRAFT_144457 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1435
Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 95/171 (55%), Gaps = 6/171 (3%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+E L Y F+N +LL EA T PS F SY+RLE++GD++++L++ + + +P PG
Sbjct: 1129 QEALHYDFHNGDLLIEASTHPSFESGTFGSYQRLEFLGDALIDLVVMQYLYRKFPEGTPG 1188
Query: 130 SLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNG 184
L+ RS V ++ +A VA+ +L L+K + N L + ++ + D+ + +
Sbjct: 1189 QLSWARSRAVCSQTMAWVAVTQLELNKIMLVNNSELNIALAKYIPILEDFSAEDIIAKSW 1248
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP 235
+D PK L+D++ES +GAV +D + V + +++ ++ TL P
Sbjct: 1249 KLDPPKALSDVLESIMGAVLLDTAYDYERSEAVVEWVMRDVLDALTLDLPP 1299
Score = 41.2 bits (95), Expect = 0.60, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
+LL EA+T P F S +RLE +GDSVL L + + G L LR V
Sbjct: 958 DLLVEAYTLPHTGAGF-SNQRLETLGDSVLKLCVIVHLLNRFRRRHEGQLDALRRNAVAN 1016
Query: 142 EKLARVAIKLGLHKYL----------RHNKPLLEEQIREFSEAILDYPLHSNGLVDAP-K 190
L A +GL YL RH P EEQ F + S P +
Sbjct: 1017 RTLLARAHAIGLGSYLTCETMSVRTWRHVVP--EEQHTPFDTTSARFVARS-----IPRR 1069
Query: 191 VLADIVESTIGAVFI 205
L D +E+T+GA F+
Sbjct: 1070 CLQDCMEATLGAAFL 1084
>gi|312599268|gb|ADQ91291.1| hypothetical protein BpV2_124 [Bathycoccus sp. RCC1105 virus BpV2]
Length = 242
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 37/233 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF----FSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E ++G + N +L ++AF S + S+E LE++GDSVL ++TK F Y N
Sbjct: 9 ELLVGTKLTNLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLFDRYENR 68
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G LT+ R+ V E LA +A KLGL+ +++ + E+ +R N
Sbjct: 69 QEGFLTKARTKLVRGETLADIATKLGLYNWVQMD----EKGMR-------------NEWF 111
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVT-------EL 239
PK+L D+ E+ +GA+++D + + +L +PE + + + L
Sbjct: 112 KNPKILEDVFEALVGAIYMDLG-----LLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHL 166
Query: 240 YEVCQKNKLKV-KFVDLWKESTAFHI--FIEDQLLGRGAYAPKKEIAHNRAAK 289
CQ N L + ++ L E+ F+I ++++ LGRG +A K+ A AAK
Sbjct: 167 MRHCQTNNLSLPEYRVLNHENGIFYIDVYVDNVFLGRG-HAKNKKQAEQHAAK 218
>gi|374997118|ref|YP_004972617.1| ribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357215484|gb|AET70102.1| ribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 261
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 28/205 (13%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
+RLE++GD++L+ ++ + + YP+ P G LT++R+A VN LAR A ++ L + L
Sbjct: 71 QRLEFLGDAILDFVIAEYLYLNYPDRPEGELTKMRAAVVNETTLARKAHEIELGQELLLG 130
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
K L +G + P +LAD E+ IGA+++ +V E
Sbjct: 131 KGEL-----------------VSGGRERPSILADAWEAVIGAIYLQY--GFQEARRVILE 171
Query: 221 LLKPMISPETLKTHP--VTELYEVCQKNKLKVKFVDLWKE------STAFHIFIEDQLLG 272
LLKP I + T L E Q+ + +V + L +E S +FIE +L+G
Sbjct: 172 LLKPAIEEVAKGNYGDYKTVLQEKAQREEKEVSYQILLEEGPDHNKSFTAGVFIEGELMG 231
Query: 273 RGAYAPKKEIAHNRAAKDALNNIER 297
+G KKE A AAK+ L+ R
Sbjct: 232 KGIGRTKKE-AEQHAAKEVLDQWGR 255
>gi|328771050|gb|EGF81090.1| hypothetical protein BATDEDRAFT_23768 [Batrachochytrium
dendrobatidis JAM81]
Length = 380
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 38/222 (17%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
++RLE++GD+VL+ L+ + + + P L PG L++L + V + LA V+I++GL KY+RH
Sbjct: 61 FQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQIGLVKYIRH 120
Query: 160 NKPLLEEQIREFSEAILDY---------PLHSNGLV------------DAPKVLADIVES 198
+E I F+ + Y P+ ++ APK D+ ES
Sbjct: 121 TDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAPKTAGDVYES 180
Query: 199 TIGAVFIDCNSSIDIVWKVFK-ELLKP-------MISPETL-KTHPVTEL----YEVCQK 245
+GAVF+D I V +F ++ P + E++ +PV EL Y + +
Sbjct: 181 MLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELRTLSYSLFKC 240
Query: 246 NKLKVKF-VDLWKESTA---FHIFIEDQLLGRGAYAPKKEIA 283
K+ + L +TA +H + Q LG G KK A
Sbjct: 241 VKIDYTYEYGLHGGTTATITYHNMVLAQCLGTGQRDAKKAAA 282
>gi|334127838|ref|ZP_08501740.1| ribonuclease III [Centipeda periodontii DSM 2778]
gi|333388559|gb|EGK59733.1| ribonuclease III [Centipeda periodontii DSM 2778]
Length = 238
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 41/225 (18%)
Query: 74 LGYRFNNKNLLEEAFTDPS----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+G F+N LL+EA T PS + ERLE++GD+VL L + + L+P+ G
Sbjct: 20 MGVSFDNIALLDEALTHPSYTNEAKDVIAHNERLEFLGDAVLELASSTYLYALFPDCSEG 79
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT++R++ V +E LAR+A +L L YLR + LH NG +
Sbjct: 80 ELTKMRASLVQSETLARLARQLDLGSYLRLGRG----------------ELH-NGGAERQ 122
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET---LKTHPV----TELYEV 242
L + E+ IGAV++D W ++ + ++ E +TH T L E
Sbjct: 123 NNLENAFEAVIGAVYLDGG------WAAARDYVARQLAAEAQLVQRTHVTRDYKTTLQEH 176
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
Q+ + +L ES H + I+ Q +G G KK
Sbjct: 177 IQQKRHATISYELIGESGPDHDKRFTTLVRIDGQPMGEGTGRSKK 221
>gi|321452752|gb|EFX64071.1| hypothetical protein DAPPUDRAFT_118569 [Daphnia pulex]
Length = 344
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 97/210 (46%), Gaps = 47/210 (22%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
EE +GY F +K LL A T S CP R E LE +GD+ L+L P
Sbjct: 69 EEKIGYEFKDKTLLGRALTHSSANVTKCPSR--DGENLEVLGDASLDL---------NPR 117
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G L+ L+SA + LA +A++ GLH L+H P E+QI E + +D+ + L
Sbjct: 118 YNQGQLSVLKSAITCNDTLAVIAVRSGLHLLLQHRLP--EKQIEEL-RSFVDHQNKNQHL 174
Query: 186 --------------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM 225
+D PKV AD ES IGA+ IDC ++ KV L+ +
Sbjct: 175 FSHEKELVIISSSEGDRAFDIDYPKVYADAFESLIGALRIDCEREDKVIRKVVLNLMGDV 234
Query: 226 ISPETLKTH---PVTELYEVCQKNKLKVKF 252
I+ K H PV L V Q NK++ +F
Sbjct: 235 IA----KFHTNIPVCPLQRVNQ-NKIRTEF 259
>gi|410667365|ref|YP_006919736.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
gi|409105112|gb|AFV11237.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
Length = 235
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 110/235 (46%), Gaps = 37/235 (15%)
Query: 78 FNNKNLLEEAFTDPSC----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
F+ LLE A T PS E +RLE++GD++L ++ + +P G LT+
Sbjct: 16 FSEPRLLETALTHPSYMVEHAEVEHHNQRLEFLGDAILGSVVAYYLYEHFPKFGEGHLTK 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
R+A V LA VA KL L KYLR K EE ++G P +LA
Sbjct: 76 TRAAVVCEPSLAAVARKLELGKYLRLGKG--EE---------------NSGGRKRPSILA 118
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPET--LKTHPVTELYEVCQKNKLK 249
D E+ AVF+D ++ D + + KE ++ + T KTH L E+ Q +
Sbjct: 119 DAFEALTAAVFLDQGWEATCDFLAGLLKEEIEKNVHGVTRDYKTH----LQELVQSKGNE 174
Query: 250 VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ + +ES H +F++D+LLG+G KKE N AA+ AL + +
Sbjct: 175 SPYYQILEESGPDHDKKFTSGVFLKDKLLGKGTGKSKKESEQN-AARAALEYLRK 228
>gi|332532635|ref|ZP_08408511.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
gi|332037851|gb|EGI74300.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
Length = 225
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F ++ LLE+A T S + ERLE++GDS+L+ ++ + +P G L+R
Sbjct: 12 IGYEFADQGLLEQAMTHRS--HKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDLSR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V + LA ++ GL YLR L+ +G LA
Sbjct: 70 MRSTLVRGQTLAEFGLEFGLGDYLRLGPGELK-----------------SGGFRRESTLA 112
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA F+D +S D++ ++ L ISP + P T L E Q KL +
Sbjct: 113 DAVEAIIGAAFLDSGIDSCGDLILSWYESRLDA-ISPGLNQKDPKTLLQEYLQARKLSL 170
>gi|304404216|ref|ZP_07385878.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
gi|304347194|gb|EFM13026.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
Length = 232
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 105/235 (44%), Gaps = 34/235 (14%)
Query: 77 RFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
RF LL +AFT S ERLE++GD+VL LL+++ F YPN P G L
Sbjct: 16 RFRQPRLLRQAFTHTSYVNEHRGKPIEDNERLEFLGDAVLQLLVSEHLFLTYPNRPEGEL 75
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
TR+R++ V LAR A LGL + + EEQ+ G P +
Sbjct: 76 TRMRASIVCEPSLARFADLLGLGACVLLGRG--EEQL---------------GGRHRPAL 118
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI--SPETLKTHPVTELYEVCQKNKLK 249
LAD+ E+ +GAV++D +D V E + P I + L ++L E Q L
Sbjct: 119 LADLFEAFVGAVYLD--QGLDRVRLFLTERIFPQIEENGSLLVKDFKSKLQEKAQHGTLG 176
Query: 250 VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ +E H + I DQ G G KKE A R+A+ A +E+
Sbjct: 177 TVEYRIAEERGPAHDREFVVEVRIGDQPYGIGVGRTKKE-AEQRSAEAACLKLEQ 230
>gi|346313800|ref|ZP_08855327.1| ribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|345907655|gb|EGX77365.1| ribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
Length = 227
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 105/232 (45%), Gaps = 35/232 (15%)
Query: 78 FNNKNLLEEAFTDPSCPERFFSY----ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+++K L+ +A S SY ERLE++GD+VL L TK+ F L P L G +T
Sbjct: 15 YSDKKLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTKKLFLLEPELSEGQMTT 74
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V E LA +LGL KYL +L G +LA
Sbjct: 75 LRAQLVCEEALAEYNRQLGLGKYL-----------------MLGVGEEKTGGRQRDSILA 117
Query: 194 DIVESTIGAVFIDCN-SSIDIVWKVFKELLKPMIS-PETLKTHPV-TELYEVCQKNKLKV 250
D+ E+ +GAVF+D +IDI + ++ P IS P++ K T+L E Q + K
Sbjct: 118 DMFEALLGAVFLDQGMEAIDI---ILSAVVTPAISRPKSEKVIDYKTKLQEYIQSDSRKT 174
Query: 251 KFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ S + + ++D LGRG KK A AAKDA +
Sbjct: 175 VHYETVNVSGPSNKPEFEVIVMLDDINLGRGKGFSKKR-AEQMAAKDAFEKM 225
>gi|438000104|ref|YP_007183837.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451813034|ref|YP_007449487.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|429339338|gb|AFZ83760.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451779003|gb|AGF49883.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 236
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 93/187 (49%), Gaps = 26/187 (13%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
L+ E L Y+F+N NLLE A T S P ERLE++GDSVLN +T F Y +
Sbjct: 4 LELEYSLNYKFSNNNLLELALTHRSYGSPHN----ERLEFLGDSVLNFAITIFLFEKYSD 59
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G L+RLR+ V LA +A L L +YL+ + D L S G
Sbjct: 60 IDEGGLSRLRARLVQQNSLATIASDLNLSRYLK----------------LGDGELKSGG- 102
Query: 186 VDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ P +LAD +E+ GAVF D N + ++ K F +LL + +T+ + L E+
Sbjct: 103 CNRPSILADCLEAVFGAVFKDSSFNEARIVIEKQFVKLLNNL-DLKTMCKDAKSLLQELL 161
Query: 244 QKNKLKV 250
Q K+ +
Sbjct: 162 QSRKISL 168
>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
Length = 273
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 34/195 (17%)
Query: 40 ISHLLQDLFVNEKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS 99
++ L+ D + G +E+ +++ L E LGYR LE A + R ++
Sbjct: 1 MTGLMSDAKSGSRRGGTGSAENAASSHTLLEGR-LGYR------LETALLVRALTHRSYA 53
Query: 100 YE--------RLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKL 151
YE RLE++GDSVL L++T + +P+LP G L +LR+A VN+ LA V L
Sbjct: 54 YENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGL 113
Query: 152 GLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSI 211
L ++R L G D +LAD +E+ IGAV++D +
Sbjct: 114 ELGSFVR-----------------LGRGEEGTGGRDKASILADTLEAVIGAVYLD--QGL 154
Query: 212 DIVWKVFKELLKPMI 226
D ++ L P+I
Sbjct: 155 DAASELVHRLFDPLI 169
>gi|169632753|ref|YP_001706489.1| ribonuclease III [Acinetobacter baumannii SDF]
gi|238688259|sp|B0VTM5.1|RNC_ACIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|169151545|emb|CAP00312.1| ribonuclease III, ds RNA [Acinetobacter baumannii]
Length = 230
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F LL+ A T S ++ +YERLE++GDS+L +++ + YP+ G LTR
Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKY-NYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTR 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 76 MRATLVRQEALGKIATDLQLSRCL-----------------ILSTGELKSGGHHRESILA 118
Query: 194 DIVESTIGAVFIDC---NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA+++D N DIV K + L + + LK P + L E Q K +
Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKD-PKSRLQEYLQARKKPL 177
Query: 251 ---KFVDLWKESTAFHIFIE------DQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ VD+ ++ H +E ++ G GA + A AA + L +E+
Sbjct: 178 PVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGA---SRRFAEQAAAAEILKLLEQ 230
>gi|328770010|gb|EGF80052.1| hypothetical protein BATDEDRAFT_24776 [Batrachochytrium
dendrobatidis JAM81]
Length = 380
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 40/256 (15%)
Query: 67 NLDEEEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPN 125
+L++ ++ G R N L++ + S + S ++RLE++GD+VL+ L+ + + + P
Sbjct: 28 SLNQFDVRGVR-NMHKLVDTIHYNHSGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPP 86
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY------- 178
L PG L++L + V + LA V+I++GL KY+RH +E I F+ + Y
Sbjct: 87 LNPGGLSKLCAELVCNQFLACVSIQIGLVKYIRHTDMTMEAAIGRFATWVQGYLASESST 146
Query: 179 --PLHSNGLV------------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFK-ELLK 223
P+ ++ APK D+ ES +GAVF+D I V +F ++
Sbjct: 147 PLPISTSATQIASARLFWNKGNTAPKTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVIS 206
Query: 224 P-------MISPETL-KTHPVTEL----YEVCQKNKLKVKF-VDLWKESTA---FHIFIE 267
P + E++ +PV EL Y + + K+ + L +TA +H +
Sbjct: 207 PWWWRFTSLFGGESMIYENPVAELRTLSYSLFKCVKIDYTYEYGLHGGTTATITYHNMVL 266
Query: 268 DQLLGRGAYAPKKEIA 283
Q LG G KK A
Sbjct: 267 AQCLGTGQRDAKKAAA 282
>gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans]
gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans]
Length = 1666
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 54/224 (24%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1384 EHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1443
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1444 GALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHI 1503
Query: 179 ----------PL---------HSNGL--------------------VDAPKVLADIVEST 199
PL H+N VD PK L D++E+
Sbjct: 1504 LLEEADVQPTPLDLDDELELPHANKCISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLEAL 1563
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPVTELYE 241
I A+++DC + W+V L +P + T + +P+ +L E
Sbjct: 1564 IAAIYLDCR-DLQRTWEVIFRLFEPELQEFTRNMPINPIRQLIE 1606
>gi|95930677|ref|ZP_01313411.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
gi|95133329|gb|EAT14994.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
Length = 244
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 38/173 (21%)
Query: 71 EEILGYRFNNKNLLE----------EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
EE LGYRF +++ L+ E DP+ ER E++GD+VL+L++ F
Sbjct: 17 EERLGYRFTDRHYLQTALIHKSYANEQLRDPAACN-----ERQEFLGDAVLDLVMADYLF 71
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL 180
YP LP G L+R+RS V+ LA+VA +L L L+ L
Sbjct: 72 CTYPQLPEGELSRIRSELVSARALAKVARRLNLGPCLK-----------------LGRGE 114
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+G D +LAD +E+ GAVF+D W V +++L M ++
Sbjct: 115 RRSGGQDKDNLLADALEAVFGAVFLDAG------WDVARDVLGRMFEGTAVQA 161
>gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola BCc]
gi|122285505|sp|Q057R4.1|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola BCc]
Length = 226
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 39/240 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ +GY F N LL+ A T S + ERLE++GDS+L+ ++ K + +P + G
Sbjct: 10 QKFIGYTFTNITLLKHALTHRSASSQ--HNERLEFLGDSILSFIIAKALYHHFPKMNEGG 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++R+R+ V LA +A + L KYL+ L +G
Sbjct: 68 MSRMRATLVRGNTLAEIATEFSLGKYLQ-----------------LGQGEKKSGGFKRES 110
Query: 191 VLADIVESTIGAVFIDCN----SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
+LA+ +E+ I ++F+D N I + W +K K M +P K P T L E Q
Sbjct: 111 ILANAIEAIIASIFLDSNIYTVERIILYW--YKNRFKKM-NPTGTKKDPKTRLQEYLQSK 167
Query: 247 KLKVKFVDLWK-----ESTAFHIF-----IEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
+ + + + F I+ + + L+G GA K E AA++AL +E
Sbjct: 168 HFSLPIYSIGQIYGEAHNQIFTIYCKIDGLSELLIGIGASRRKAE---QDAAQNALIRLE 224
>gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans]
Length = 1714
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 54/224 (24%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1432 EHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1491
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1492 GALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHI 1551
Query: 179 ----------PL---------HSNGL--------------------VDAPKVLADIVEST 199
PL H+N VD PK L D++E+
Sbjct: 1552 LLEEADVQPTPLDLDDELELPHANKCISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLEAL 1611
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPVTELYE 241
I A+++DC + W+V L +P + T + +P+ +L E
Sbjct: 1612 IAAIYLDCR-DLQRTWEVIFRLFEPELQEFTRNMPINPIRQLIE 1654
>gi|381401154|ref|ZP_09926069.1| ribonuclease III [Kingella kingae PYKK081]
gi|380833843|gb|EIC13696.1| ribonuclease III [Kingella kingae PYKK081]
Length = 241
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 29/229 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F L++A T S + +YERLE+VGD++L+ ++T F +PNLP G L+
Sbjct: 17 LGYTFKQPAWLQQALTHRSAHSQ--NYERLEFVGDAILDYVITLMLFEAFPNLPEGRLSV 74
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V LA VA +LGL K L IL +G D +LA
Sbjct: 75 LRTHLVKEATLAEVARELGLGKAL-----------------ILGVGELKSGGYDRASILA 117
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL--- 248
D +E+ A+ D + ++ ++ ++F E ++ + + K H T L E Q ++L
Sbjct: 118 DALEAIFAAIRFDADLPTAERVIRQLFAERVQQIQVQQPDKDHK-TRLQEALQAHRLPTP 176
Query: 249 KVKFVDLWKESTAFHIFIEDQL--LGRGAYA--PKKEIAHNRAAKDALN 293
K + E + H + L LG YA + A AK AL
Sbjct: 177 KYRIERQTGEGSDSHFDVSCDLGELGHITYASGSSRRAAEQECAKQALQ 225
>gi|429205352|ref|ZP_19196629.1| ribonuclease III [Lactobacillus saerimneri 30a]
gi|428146424|gb|EKW98663.1| ribonuclease III [Lactobacillus saerimneri 30a]
Length = 230
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 35/222 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
G F+N +LL+EAFT S E YER+E++GD+V+ L +++ F YP +P
Sbjct: 13 FGIDFHNPDLLDEAFTHASYANEHKREHLKYYERIEFLGDAVMQLCVSEYLFKRYPLMPE 72
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G L+RLR+A V E ++ A++ +Y+R K + R+
Sbjct: 73 GKLSRLRAAMVREESFSKFAVECHFDEYIRLGKGEEKSNARQ-----------------R 115
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---MISPETLKTHPVTELYEVCQK 245
P +L DI E+ IGA+++D D V + + ++ P M + L H TEL E Q+
Sbjct: 116 PALLCDIFEAFIGALYLD--QGKDEVVRFIQRVVFPKLDMGWYDQLLDHK-TELQEFLQQ 172
Query: 246 NKLKVKFVDLWKEST-------AFHIFIEDQLLGRGAYAPKK 280
+ + E+ A + ++ +++G+G KK
Sbjct: 173 SGERTIVYKEIGETGPDNDKHYAMEVSVDGKVIGKGEGHSKK 214
>gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans]
Length = 1714
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 54/224 (24%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1432 EHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1491
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1492 GALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHI 1551
Query: 179 ----------PL---------HSNGL--------------------VDAPKVLADIVEST 199
PL H+N VD PK L D++E+
Sbjct: 1552 LLEEADVQPTPLDLDDELELPHANKCISQKAEQGVPPKGEFNISTNVDVPKTLGDVLEAL 1611
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPVTELYE 241
I A+++DC + W+V L +P + T + +P+ +L E
Sbjct: 1612 IAAIYLDCR-DLQRTWEVIFRLFEPELQEFTRNMPINPIRQLIE 1654
>gi|313768337|ref|YP_004062017.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1]
gi|312599033|gb|ADQ91057.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1]
Length = 235
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 34/230 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC---PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E+++G + N +L ++AFT S E+F S+E LE++GDSVL ++TK F + +
Sbjct: 11 EQLVGTKIKNLDLYQKAFTHKSALKEYEQFTESFETLEFIGDSVLGFVITKFLFDRFESR 70
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G LT+ R+ V E LAR+A LGL++ + I+D NG
Sbjct: 71 QEGFLTKARTKLVRGETLARIANALGLNELV-----------------IMDEKGMRNGWN 113
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKE----LLKPMISPETLKTHPVTELY 240
+ PK+L D+ E+ IGA+++D + + + +++++ L ++ + K H L
Sbjct: 114 NNPKILEDVFEALIGAIYMDIGLIHAKEFILRIYQDPKLVDLNSIMVDDNYKDH----LM 169
Query: 241 EVCQKNKLKV-KFVDLWKESTAFH--IFIEDQLLGRGAYAPKKEIAHNRA 287
CQ N ++ ++ F+ I+I + RG KK+ N A
Sbjct: 170 RHCQVNNWQLPEYRVAAHHEGLFYIDIYINNLFCSRGVAKSKKQAEQNAA 219
>gi|392309582|ref|ZP_10272116.1| RNase III, ds RNA [Pseudoalteromonas citrea NCIMB 1889]
Length = 225
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F ++ LLE+A T S + ERLE++GDS+L+ ++ + +P G L+R
Sbjct: 12 IGYQFTDEALLEQAMTHRS--HKGQHNERLEFLGDSILSFVIANALYEQFPKAREGDLSR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V + LA ++ L YLR L+ +G LA
Sbjct: 70 MRSTLVRGQTLAEFGVEFNLGDYLRLGPGELK-----------------SGGFRRESTLA 112
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
D VE+ IGAVF+D N D++ + ++ L ISP + P T L E Q KL
Sbjct: 113 DAVEAIIGAVFLDSDINECSDLILRWYQSRLDA-ISPGHNQKDPKTLLQEYLQARKL 168
>gi|187933552|ref|YP_001885438.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|238691613|sp|B2TJ22.1|RNC_CLOBB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|187721705|gb|ACD22926.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 232
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 116/241 (48%), Gaps = 31/241 (12%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPN 125
D E LG FNN +L++ A T S +F ERLE++GDSVL L +T+ F + +
Sbjct: 8 DIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEYLFNKFKD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G LT++RS V L +A KL L +Y+R +K E++ G
Sbjct: 68 KSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKG---EEL--------------TGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ + AD VE+ I AV++D D + F+E++ I+ E + T+L E+
Sbjct: 111 RERMSIQADAVEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFK-TKLQELL 169
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
QK+ + +L K H + I ++++G G KKE N AAK+AL +E
Sbjct: 170 QKDGEILIQYELVKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQN-AAKEALKRLE 228
Query: 297 R 297
+
Sbjct: 229 K 229
>gi|321468043|gb|EFX79030.1| hypothetical protein DAPPUDRAFT_319984 [Daphnia pulex]
Length = 488
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E IL Y N+K +L EAFT + + +Y+RLE +GD+ L L F G
Sbjct: 88 ENILHYTSNDKEVLLEAFTHGNS-MKSQNYQRLELIGDAALGFLSALNFFKKSLTHTSGD 146
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAI---------LDYPLH 181
+T+LRSA V + A K G H+++++ P+L +Q+ +F E + + L
Sbjct: 147 ITKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFTFAPFERELA 206
Query: 182 SNGLVDA-----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM 225
+NG + A P LAD+ E+ GA+ ID N S + + +V+ + P+
Sbjct: 207 ANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPV 255
>gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans]
gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans]
Length = 1714
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 54/224 (24%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1432 EHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1491
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1492 GALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHI 1551
Query: 179 ----------PL---------HSNGL--------------------VDAPKVLADIVEST 199
PL H+N VD PK L D++E+
Sbjct: 1552 LLEEADVQPTPLDLDDELELPHANKCISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLEAL 1611
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPVTELYE 241
I A+++DC + W+V L +P + T + +P+ +L E
Sbjct: 1612 IAAIYLDCR-DLQRTWEVIFRLFEPELQEFTRNMPINPIRQLIE 1654
>gi|384228258|ref|YP_005619993.1| ribonuclease III [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
gi|345539191|gb|AEO08058.1| ribonuclease III [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
Length = 226
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 35/234 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+++LGY F +K+LL++A T S + ERLE++GDS+L+ ++ + +P + G
Sbjct: 10 QKVLGYTFTHKDLLKQALTHRSASSK--HNERLEFLGDSILSFVIANALYQHFPYINEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++R+R+ V LA +A + L +YL+ + L+ +G
Sbjct: 68 MSRMRATLVRGNTLAEIAYEFDLGEYLKLGQGELK-----------------SGGFRRES 110
Query: 191 VLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LA+ VE+ IG++++D N +++ K +++ L+ ISP + P T L E Q L
Sbjct: 111 ILANTVEALIGSIYLDSNIKTVEELILKWYEKRLEK-ISPGEKQKDPKTRLQEYLQSKHL 169
Query: 249 KVK---FVDLWKES--TAFHI-----FIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+ V+++ E+ F I I + +G G+ K E AA+ AL
Sbjct: 170 ALPSYFIVEVYGEAHNQLFTIHCKISMITEHFIGTGSSRRKAE---QNAAQKAL 220
>gi|334283448|gb|AAR82738.2| SD11113p [Drosophila melanogaster]
Length = 1701
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1416 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1475
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1476 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRI 1535
Query: 179 ----------PL------------HSNGL--------------------VDAPKVLADIV 196
PL H+N VD PK L D++
Sbjct: 1536 LLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1595
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLW 256
E+ I AV++DC + W+V L +P + T K P+ + ++ + K F
Sbjct: 1596 EALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPVFSSPI 1653
Query: 257 KESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
E + + + + + K+ A AAK AL + +
Sbjct: 1654 VEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1698
>gi|90961602|ref|YP_535518.1| ribonuclease III [Lactobacillus salivarius UCC118]
gi|301299302|ref|ZP_07205588.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|385840297|ref|YP_005863621.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
salivarius CECT 5713]
gi|417788145|ref|ZP_12435828.1| ribonuclease III [Lactobacillus salivarius NIAS840]
gi|122449142|sp|Q1WUA0.1|RNC_LACS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|90820796|gb|ABD99435.1| Ribonuclease III [Lactobacillus salivarius UCC118]
gi|300214418|gb|ADJ78834.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
salivarius CECT 5713]
gi|300853146|gb|EFK80744.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|334308322|gb|EGL99308.1| ribonuclease III [Lactobacillus salivarius NIAS840]
Length = 232
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 78 FNNKNLLEEAFTDPS----CPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
F + +LL+ AFT S PER YER+E++GD+V+ L +++ + YP +P G
Sbjct: 17 FKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEHYPEMPEGK 76
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++RLR+A V + ++ AI+ ++Y+R K + R+ P
Sbjct: 77 MSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQ-----------------RPS 119
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKN- 246
+L DI ES IGA+++D D V + +++ P + H + TEL EV Q+N
Sbjct: 120 LLCDIFESFIGALYLD--QGKDEVVRFISKVIFPKLELGWF-DHMMDNKTELQEVLQQNG 176
Query: 247 KLKVKFVDL------WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ K+K+ ++ + ++ + ++++G G KK A AA AL + +
Sbjct: 177 ECKIKYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKK-AAEQMAAYQALKKLRK 232
>gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1430 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1489
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1490 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRI 1549
Query: 179 ----------PL------------HSNGL--------------------VDAPKVLADIV 196
PL H+N VD PK L D++
Sbjct: 1550 LLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1609
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLW 256
E+ I AV++DC + W+V L +P + T K P+ + ++ + K F
Sbjct: 1610 EALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPVFSSPI 1667
Query: 257 KESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
E + + + + + K+ A AAK AL + +
Sbjct: 1668 VEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1712
>gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1430 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1489
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1490 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRI 1549
Query: 179 ----------PL------------HSNGL--------------------VDAPKVLADIV 196
PL H+N VD PK L D++
Sbjct: 1550 LLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1609
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLW 256
E+ I AV++DC + W+V L +P + T K P+ + ++ + K F
Sbjct: 1610 EALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPVFSSPI 1667
Query: 257 KESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
E + + + + + K+ A AAK AL + +
Sbjct: 1668 VEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1712
>gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1430 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1489
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1490 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRI 1549
Query: 179 ----------PL------------HSNGL--------------------VDAPKVLADIV 196
PL H+N VD PK L D++
Sbjct: 1550 LLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1609
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLW 256
E+ I AV++DC + W+V L +P + T K P+ + ++ + K F
Sbjct: 1610 EALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPVFSSPI 1667
Query: 257 KESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
E + + + + + K+ A AAK AL + +
Sbjct: 1668 VEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1712
>gi|227890689|ref|ZP_04008494.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|417810411|ref|ZP_12457090.1| ribonuclease III [Lactobacillus salivarius GJ-24]
gi|418961233|ref|ZP_13513120.1| ribonuclease III [Lactobacillus salivarius SMXD51]
gi|227867627|gb|EEJ75048.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|335349207|gb|EGM50707.1| ribonuclease III [Lactobacillus salivarius GJ-24]
gi|380344900|gb|EIA33246.1| ribonuclease III [Lactobacillus salivarius SMXD51]
Length = 232
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 78 FNNKNLLEEAFTDPS----CPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
F + +LL+ AFT S PER YER+E++GD+V+ L +++ + YP +P G
Sbjct: 17 FKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEHYPEMPEGK 76
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++RLR+A V + ++ AI+ ++Y+R K + R+ P
Sbjct: 77 MSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQ-----------------RPS 119
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQKN- 246
+L DI ES IGA+++D D V + +++ P + H + TEL EV Q+N
Sbjct: 120 LLCDIFESFIGALYLD--QGKDEVVRFISKVIFPKLELGWF-DHMMDNKTELQEVLQQNG 176
Query: 247 KLKVKFVDL------WKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ K+K+ ++ + ++ + ++++G G KK A AA AL + +
Sbjct: 177 ECKIKYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKK-AAEQMAAYQALKKLRK 232
>gi|449550119|gb|EMD41084.1| hypothetical protein CERSUDRAFT_131598, partial [Ceriporiopsis
subvermispora B]
Length = 1587
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E I+G RF +LL +A T S +Y+RLE++GD++L+ L+ + + + NL G
Sbjct: 1296 EGIVGCRFEKPHLLLQALTHASIRGYEVLNYDRLEFLGDAILDFLVIRYVYERHHNLSSG 1355
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL---- 185
LT L+ A V+ LA + GL +Y H P I+ + E I + L
Sbjct: 1356 GLTLLKVAMVSNHVLAAFCVYCGLWQYALHASPDYAIAIQAYYERINNSRAQEERLAASE 1415
Query: 186 ----------VDAPKVLADIVESTIGAVFI-DCNSSIDIVWKVFKELLKPM----ISPET 230
+ PK+L+D+VE+ +GA+++ D S +IV F + +P I +T
Sbjct: 1416 GRLPGQYWHDTEPPKILSDVVEAVLGALYVSDGFSEANIV-NFFDNVFRPFYDRHIRLQT 1474
Query: 231 LKTHPVTELYEVCQ 244
L HP L+E+ Q
Sbjct: 1475 LSQHPKKTLFELMQ 1488
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 91 PSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIK 150
P + F YERLE++GD+ L L + F P G+L R ++ + L +++
Sbjct: 974 PPSADAEFDYERLEFLGDAYLKYLSSTYCFVTMPRKNEGALHYARQRYISNKALRTGSVR 1033
Query: 151 LGLHKYLR 158
LGL Y++
Sbjct: 1034 LGLPSYVQ 1041
>gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
Length = 1457
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 8/190 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+E LGY F++ ++L EA T PS SY+RLE++GD++L+L++ + +P
Sbjct: 1125 QERLGYTFHSNSILVEAVTHPSFATDGPSYQRLEFLGDAILDLVVVHYLYEKFPEANSHQ 1184
Query: 131 LTRLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEEQIREFS---EAILDYPL-HSNGL 185
L+ LR+ + LA +AIK LG+HK L N L I + E I D + S
Sbjct: 1185 LSLLRAKVICAPTLAYLAIKELGVHKILLINNMGLYRAIEAYVPVFEDITDEEIARSYYK 1244
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYE-V 242
D PK ++D+ ES +GAV +D + D V +++ ++ +L PV+ L E V
Sbjct: 1245 FDPPKAISDVFESLVGAVLVDSGYNYDKTSAVVLDIMSKVLDQLSLDMAKDPVSLLLEWV 1304
Query: 243 CQKNKLKVKF 252
Q ++ F
Sbjct: 1305 AQHGCREISF 1314
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 78 FNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSA 137
F +L E+ T P+ FS +RLE +GD+VL L T F YPN G LT LR A
Sbjct: 953 FIEDKILIESLTIPAA-LLAFSNQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLTTLRRA 1011
Query: 138 NVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVE 197
V+ + L + A+++GL +Y+ + E P S + + L D +E
Sbjct: 1012 TVSNKFLLQRALEMGLEEYITVEIASVARWRYILGEDADTAPPRSVRTLVPRRSLQDCME 1071
Query: 198 STIGAVFI 205
+ +GA F+
Sbjct: 1072 ALLGASFL 1079
>gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
29799]
gi|150269990|gb|EDM97509.1| ribonuclease III [Pseudoflavonifractor capillosus ATCC 29799]
Length = 223
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 24/185 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
EE LGY F N+ LLE A T S S ERLE++GDSVL ++ + ++P+
Sbjct: 5 EEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLYRVHPD 64
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G LTR R+A V L VA +L L YL+ K + G
Sbjct: 65 LPEGDLTRTRAALVCEGSLVEVAQQLELGTYLKLGK-----------------GEDAGGG 107
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ P ++AD VE+ + AV++D I K+ + + ++ T L E+ Q+
Sbjct: 108 RERPSIVADAVEAVLAAVYLD--GGIGSARKIIQRFILDREEEKSGSRDYKTALQELVQR 165
Query: 246 NKLKV 250
+V
Sbjct: 166 ESGQV 170
>gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1430 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1489
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1490 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRI 1549
Query: 179 ----------PL------------HSNGL--------------------VDAPKVLADIV 196
PL H+N VD PK L D++
Sbjct: 1550 LLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1609
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLW 256
E+ I AV++DC + W+V L +P + T K P+ + ++ + K F
Sbjct: 1610 EALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPVFSSPI 1667
Query: 257 KESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
E + + + + + K+ A AAK AL + +
Sbjct: 1668 VEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1712
>gi|333375615|ref|ZP_08467422.1| ribonuclease III [Kingella kingae ATCC 23330]
gi|332970079|gb|EGK09076.1| ribonuclease III [Kingella kingae ATCC 23330]
Length = 241
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 29/229 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F L++A T S + +YERLE+VGD++L+ ++T F +PNLP G L+
Sbjct: 17 LGYIFKQPTWLQQALTHRSAHSQ--NYERLEFVGDAILDYVITLMLFEAFPNLPEGRLSV 74
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V LA VA +LGL K L IL +G D +LA
Sbjct: 75 LRTHLVKEATLAEVARELGLGKAL-----------------ILGVGELKSGGYDRASILA 117
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL--- 248
D +E+ A+ D + ++ ++ ++F E ++ + + K H T L E Q ++L
Sbjct: 118 DALEAIFAAIRFDADLPTAERVIRQLFAERVQQIQVQQPDKDHK-TRLQEALQAHRLPTP 176
Query: 249 KVKFVDLWKESTAFHIFIEDQL--LGRGAYA--PKKEIAHNRAAKDALN 293
K + E + H + L LG YA + A AK AL
Sbjct: 177 KYRIERQTGEGSDSHFDVSCDLGELGHITYASGSSRRAAEQECAKQALQ 225
>gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1430 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1489
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1490 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRI 1549
Query: 179 ----------PL------------HSNGL--------------------VDAPKVLADIV 196
PL H+N VD PK L D++
Sbjct: 1550 LLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1609
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLW 256
E+ I AV++DC + W+V L +P + T K P+ + ++ + K F
Sbjct: 1610 EALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPVFSSPI 1667
Query: 257 KESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
E + + + + + K+ A AAK AL + +
Sbjct: 1668 VEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1712
>gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1430 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1489
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1490 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRI 1549
Query: 179 ----------PL------------HSNGL--------------------VDAPKVLADIV 196
PL H+N VD PK L D++
Sbjct: 1550 LLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1609
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLW 256
E+ I AV++DC + W+V L +P + T K P+ + ++ + K F
Sbjct: 1610 EALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPVFSSPI 1667
Query: 257 KESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
E + + + + + K+ A AAK AL + +
Sbjct: 1668 VEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1712
>gi|403361874|gb|EJY80651.1| Dicer-2 protein [Oxytricha trifallax]
Length = 1140
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 118/272 (43%), Gaps = 47/272 (17%)
Query: 70 EEEILGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKE-------- 118
+E +L Y+F N LL EA T S ++ YE+LE +GDS+L+ L
Sbjct: 865 QENVLNYKFKNPLLLIEALTHKSAKDQLEINLCYEKLEVLGDSILDYLCNYSLIYYTMFE 924
Query: 119 --------QFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIRE 170
Q+ + + P + +S V E LA++ + LG+HKY+ + L +E
Sbjct: 925 RYIEKDPVQYQIEEHFTPSDAHQSKSLLVKNELLAKITVLLGIHKYIFYQDTLGLFDKKE 984
Query: 171 FSEAILDYPLHSN--------GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
S+ L Y N L + PK+L D+ ES +GA+FID ++ V +VF+ L+
Sbjct: 985 VSDY-LKYSFRPNFRLNQREVELFECPKLLGDVFESLMGAIFID--GGMNAVIQVFRNLV 1041
Query: 223 KPMI-----SPETLKTHPVTELYEVCQKNKLK--VKFVDL-----WKESTAFHIFIEDQL 270
P + + L P E K+K KF ++ E T + + +
Sbjct: 1042 GPFVLFIAQFSKKLYKEPKEEFLLTSHSFKIKPQYKFYEVPVVIQVDEQTQAEMIKAEVI 1101
Query: 271 LGRG-----AYAPKKEIAHNRAAKDALNNIER 297
G AY K+ A A+ + LN I+R
Sbjct: 1102 FNNGEVMCTAYGSNKKQAERNASVEGLNFIDR 1133
>gi|344199888|ref|YP_004784214.1| ribonuclease 3 [Acidithiobacillus ferrivorans SS3]
gi|343775332|gb|AEM47888.1| Ribonuclease 3 [Acidithiobacillus ferrivorans SS3]
Length = 226
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 22/192 (11%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F ++LL +A T S + ERLE++GD+ LN ++ + + +P + G L+R
Sbjct: 11 VGYHFREQSLLSQALTHRSAGAQH--NERLEFLGDAALNFVVAAKLYARFPKVSEGDLSR 68
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E LA +A K+ L +L IL +G + A
Sbjct: 69 MRARLVREETLAEIAGKIALADFL-----------------ILGSGEIRSGGARRDSIRA 111
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVK 251
D +E+ IGA F+D ++ DIV ++ + L+ +S E L+ P T L E Q +
Sbjct: 112 DALEAVIGAAFLDGGFAAAEDIVAQLVEPLMTDHLSGEELRD-PKTRLQEFLQGQGRPLP 170
Query: 252 FVDLWKESTAFH 263
L E H
Sbjct: 171 IYALVAEKGQAH 182
>gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1430 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1489
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1490 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRI 1549
Query: 179 ----------PL------------HSNGL--------------------VDAPKVLADIV 196
PL H+N VD PK L D++
Sbjct: 1550 LLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1609
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLW 256
E+ I AV++DC + W+V L +P + T K P+ + ++ + K F
Sbjct: 1610 EALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPVFSSPI 1667
Query: 257 KESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
E + + + + + K+ A AAK AL + +
Sbjct: 1668 VEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1712
>gi|416120344|ref|ZP_11594983.1| Ribonuclease III [Campylobacter concisus UNSWCD]
gi|384576845|gb|EIF06166.1| Ribonuclease III [Campylobacter concisus UNSWCD]
Length = 223
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 32/242 (13%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
NL+E E LGY+F LLEEA T S + + ERLE++GD+V++LL+ + F +
Sbjct: 3 NLEEFERNLGYKFKKSELLEEALTHKSTKQAL-NNERLEFLGDAVMDLLVAEYLFKKFSK 61
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +++LR+A VN + A ++ +L + ++LR L +NG
Sbjct: 62 IAEGDMSKLRAALVNEKSFANMSRRLNMGEFLR-----------------LSQAEENNGG 104
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKV---FKELLKPMISPETLKTHPVTELYEV 242
+ +L+D E+ +GA++++ + +D V ++ EL P I L+ T L EV
Sbjct: 105 REKDSILSDAFEAVMGAIYLE--AGLDKVREISISLLELCYPQIDFAHLEKDYKTALQEV 162
Query: 243 CQKN-------KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q +L F K+ + + + + R + KK+ A AAK AL I
Sbjct: 163 TQATLGVIPTYELIGSFGPDHKKEFEIALLLNGKEISRAVGSSKKQ-AQQLAAKIALEKI 221
Query: 296 ER 297
++
Sbjct: 222 KK 223
>gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 119/290 (41%), Gaps = 60/290 (20%)
Query: 66 NNLDEEEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLY 123
N+ E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F
Sbjct: 1425 NHFYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENN 1484
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAIL 176
+ PG+LT LRSA VN LA + ++ LH ++ L E I +F +
Sbjct: 1485 TKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVT 1544
Query: 177 DY-------------PL------------HSNGL--------------------VDAPKV 191
+Y PL H+N VD PK
Sbjct: 1545 NYVRILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKA 1604
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVK 251
L D++E+ I AV++DC + W+V L +P + T K P+ + ++ + K
Sbjct: 1605 LGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPV 1662
Query: 252 FVDLWKESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
F E + + + + + K+ A AAK AL + +
Sbjct: 1663 FSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1712
>gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2]
gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2]
Length = 241
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 34/238 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E+I +RF ++ LL A T PS E SYERLE++GDS+L ++ F YP++
Sbjct: 11 EQICHHRFADRQLLRCALTHPSAVEGQPVCASYERLEFLGDSILGAIVAVALFNSYPSID 70
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTRL+ + V+ L+ V ++LG+ + + I G
Sbjct: 71 EGRLTRLKVSLVSGAMLSDVGLELGIDRCI-----------------IFGASETGTGARG 113
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQ 244
L ++ ES + A+++D D+ L+P ++ PE++ ++P + L E Q
Sbjct: 114 MHSALENVYESLVAAMYLD--GGWDVAEAFILRTLEPHLADDRPESV-SNPKSILQERVQ 170
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
++ + L S H + ++ GRG + KKE A AA+DAL +
Sbjct: 171 EDHGEPPCYKLVGMSGPAHEPTFTAVVLVDGVRCGRGTGSSKKE-AEASAARDALERM 227
>gi|253999489|ref|YP_003051552.1| ribonuclease III [Methylovorus glucosetrophus SIP3-4]
gi|313201514|ref|YP_004040172.1| ribonuclease III [Methylovorus sp. MP688]
gi|253986168|gb|ACT51025.1| ribonuclease III [Methylovorus glucosetrophus SIP3-4]
gi|312440830|gb|ADQ84936.1| ribonuclease III [Methylovorus sp. MP688]
Length = 224
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 22/182 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +LG+ F N LL +A T S R + ERLE++GD VLN ++ + F + LP G
Sbjct: 7 ERLLGHDFTNGQLLTQALTHRSHSAR--NNERLEFLGDGVLNCIIANQLFQRFSKLPEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V L +A +L L L+ L E +++ +G P
Sbjct: 65 LSRLRAHLVKEPTLCEIAQRLQLGDMLK----LGEGELK-------------SGGWRRPS 107
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
VLAD +E+ IGAVF+D ++ +V +++ LL+ I P+++ + L E Q K+
Sbjct: 108 VLADALEAIIGAVFLDAGFIAAEALVVRLYTPLLEA-IDPKSIGKDAKSLLQEYLQGRKI 166
Query: 249 KV 250
+
Sbjct: 167 AL 168
>gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
Length = 1017
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 39/173 (22%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ++GY F K LL EA T S P SYERLE++GD+VL+ +++K P L
Sbjct: 716 ETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAHSPELSH 775
Query: 129 GSLTRLRSANVNTEKLA--------------RVAI-----KLGLHKYLRHNKPLL----- 164
+ +R+A VN LA + ++ K + ++LR P L
Sbjct: 776 QKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQFLRSGSPSLNANRD 835
Query: 165 -----EEQIREFSEAILD------YPLHSNGLVDAPKVLADIVESTIGAVFID 206
EQ+R+ E I+ +P H L D PK L+D+VES IGAV+ID
Sbjct: 836 NALRQHEQVRD--EIIIGLNEAARFPWHLFALTDPPKFLSDMVESVIGAVYID 886
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
Y+RLE++GD +L + T P P LT + V+ LAR I GL +++
Sbjct: 564 YQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFMIT 623
Query: 160 NKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVF 204
+ ++ +L + + K++ADI+ES IGA +
Sbjct: 624 KSFTGAKWAPRYAGDLLAETGPAVKEERSSKLIADIIESLIGACY 668
>gi|218248059|ref|YP_002373430.1| Ribonuclease III [Cyanothece sp. PCC 8801]
gi|257060612|ref|YP_003138500.1| ribonuclease III [Cyanothece sp. PCC 8802]
gi|218168537|gb|ACK67274.1| Ribonuclease III [Cyanothece sp. PCC 8801]
gi|256590778|gb|ACV01665.1| ribonuclease III [Cyanothece sp. PCC 8802]
Length = 225
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 44/242 (18%)
Query: 77 RFNNKNLLEEAFTDPSCPERFFSY----ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
+F N+ LL+ A T S F ERLE++GD++L ++++E + YP L LT
Sbjct: 6 QFKNQELLDCALTHRSYINEHFEVTEHNERLEFLGDAILQFVVSEELYRRYPELTEAQLT 65
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
RLRS V+ +LA+ A L L + + + +++ RE P +L
Sbjct: 66 RLRSKLVDEPQLAQFARTLDLGQLMYLGQGAIKDGGRE-----------------NPALL 108
Query: 193 ADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
+D E+ IGA F+D + V +FKE + ++ PE+ P + KN+L+
Sbjct: 109 SDAFEAIIGAYFLDAGIEAVQYFVRSLFKEAIDNLVLPESRTVSPSI----IDVKNRLQQ 164
Query: 251 KFVDLWKE----------------STAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
++ +K+ F + I Q+LG G K+E A AA+DAL+
Sbjct: 165 WALEQYKQVPEYFLIEQSGPDHAKEFVFGVRINGQVLGTGKGRRKQE-ATKAAAQDALDK 223
Query: 295 IE 296
++
Sbjct: 224 LQ 225
>gi|91775216|ref|YP_544972.1| ribonuclease III [Methylobacillus flagellatus KT]
gi|91775360|ref|YP_545116.1| ribonuclease III [Methylobacillus flagellatus KT]
gi|91709203|gb|ABE49131.1| RNAse III [Methylobacillus flagellatus KT]
gi|91709347|gb|ABE49275.1| RNAse III [Methylobacillus flagellatus KT]
Length = 248
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
L Y F +K LL A T S + ERLE++GD VLN L+ + F +P LP G L+R
Sbjct: 32 LAYEFKDKGLLTLALTHRSYSGS--NNERLEFLGDGVLNFLVAHQLFLRFPKLPEGDLSR 89
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V + L+ +A +L + ++LR L E +++ +G P VLA
Sbjct: 90 LRAQLVKEQTLSEIATELSVGEFLR----LGEGELK-------------SGGWRRPSVLA 132
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNKL 248
D +E+ IGAVF+D + K L P I P+ + + L E Q K+
Sbjct: 133 DAMEAIIGAVFLD--GGYPAAEALVKRLFLPRMEGIDPKAIGKDAKSLLQEFLQGRKI 188
>gi|374623029|ref|ZP_09695546.1| Ribonuclease III [Ectothiorhodospira sp. PHS-1]
gi|373942147|gb|EHQ52692.1| Ribonuclease III [Ectothiorhodospira sp. PHS-1]
Length = 229
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 22/182 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +L +LL +A T S + ERLEY+GDS LN ++ F L P P G
Sbjct: 7 EALLPASLQGSDLLRQALTHRSASQ--CHNERLEYLGDSALNFIVAAHLFALRPQAPEGE 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR++ VN + LA++A G+ L ++ D S G
Sbjct: 65 LSRLRASLVNQDSLAQIARDQGMGTLL----------------SLGDGERKSGG-HRRDS 107
Query: 191 VLADIVESTIGAVFI--DCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LAD +E+ IGAV++ D ++ D V +++ + S E LK P T L E Q+ L
Sbjct: 108 ILADALEAVIGAVYLATDFATTRDFVLRLYGRRFAALPSAEDLKD-PKTRLQEWLQRKNL 166
Query: 249 KV 250
+
Sbjct: 167 DI 168
>gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis
JAM81]
Length = 1746
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 39/230 (16%)
Query: 63 PNANNLDEEEI------LGYRFNNKNLLEEAFTDPSCPERFF----SYERLEYVGDSVLN 112
P + LD+E + L Y F+N LL A P F+ +ERLE++GD++++
Sbjct: 1471 PILSRLDQETVDHVQQKLSYNFHNPELLLIALMTP-----FYFVKSKFERLEFLGDAIMD 1525
Query: 113 LLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS 172
+L+ + + Y + P SL+++ A V ++ + L LH++L L Q+ + S
Sbjct: 1526 ILVARYFYRHYKHADPCSLSKMIQATVCKPAFCKILVSLKLHEHL-----LQSSQLSQHS 1580
Query: 173 -EAILDYPLH------------SNGLVDAPKVLADIVESTIGAVFIDCNSSID----IVW 215
EAI+ Y + ++ +D PKVL D+ E + A+FID +++ +++
Sbjct: 1581 KEAIVLYANYIQNSHSQHAFKQADKAIDGPKVLCDVFEVIVAAIFIDTGYNLERTRLVIF 1640
Query: 216 KVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTA--FH 263
++ I+ ET+ P+ +L+ Q + ++L ES A FH
Sbjct: 1641 PYVHSFIQSNINLETITEPPIRQLFAFVQSQGFSSEKLELSDESNADGFH 1690
>gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501]
gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501]
Length = 234
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 35/234 (14%)
Query: 78 FNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
F + +LL+ A T S ERLE++GDSVL++++++ F YP+ P G L
Sbjct: 21 FADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIVVSEYMFNRYPDYPEGKLA 80
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
++R++ V+ LA A +L L +YL +L + G +L
Sbjct: 81 KMRASVVSAPTLAAKARELDLGRYL-----------------LLGHGEEMTGGRKRSSIL 123
Query: 193 ADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK--- 247
AD E+ +G++++D + I D + K+ K ++ + E ++ + T L E+ QK
Sbjct: 124 ADAFEALVGSIYLDQDLDIAEDFIMKLMKVDIESAEAGEHIRDYKTT-LQEMIQKRSNAR 182
Query: 248 -----LKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
++ K D KE T + D+ LG G + KKE A +AAK+AL ++
Sbjct: 183 PEYYVIEEKGPDHSKEFT-VEVKFNDRSLGEGTGSSKKE-AQQQAAKNALKKLK 234
>gi|295425203|ref|ZP_06817906.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
gi|295064979|gb|EFG55884.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
Length = 227
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 73/149 (48%), Gaps = 30/149 (20%)
Query: 72 EILGYRFNNKNLLEEAFTDPSC----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E G +F+N+ LLEEAFT S PE YE+LE++GD+VL L ++ + YPNL
Sbjct: 12 EKYGIKFHNEKLLEEAFTHSSYANEHPEGVRDYEKLEFLGDAVLELAVSDYLYRHYPNLN 71
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYL-----------RHNKPLLEEQIREFSEAI- 175
G LTR+RS V TE + AI+ G + RH K LLE+ F+ A+
Sbjct: 72 EGELTRMRSNIVRTEGFSEFAIECGFQDEINLGKGEEKAGARHRKTLLEDVFEAFNGALY 131
Query: 176 LD--------------YPLHSNGLVDAPK 190
LD YPL G DA +
Sbjct: 132 LDQGMKAVTHFLHLTVYPLIDKGEFDASR 160
>gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster]
gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster]
gi|342672109|gb|AEL30809.1| FI15132p1 [Drosophila melanogaster]
Length = 1722
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1437 EKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1496
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-------SEAILDY--- 178
G+LT LRSA VN LA + ++ LH ++ L E I +F + +Y
Sbjct: 1497 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRI 1556
Query: 179 ----------PL------------HSNGL--------------------VDAPKVLADIV 196
PL H+N VD PK L D++
Sbjct: 1557 LLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1616
Query: 197 ESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLW 256
E+ I AV++DC + W+V L +P + T K P+ + ++ + K F
Sbjct: 1617 EALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFTRKV-PINHIRQLVEHKHAKPVFSSPI 1674
Query: 257 KESTAFHIFIEDQLLGRG----AYAPKKEIAHNRAAKDALNNIER 297
E + + + + + K+ A AAK AL + +
Sbjct: 1675 VEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1719
>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
Length = 238
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 30/238 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E ++G+ F ++ LL A T S S ERLE++GDSVL +++ F L+P G
Sbjct: 14 ERVIGHSFQDRGLLRAALTHSSRAVHPLASNERLEFLGDSVLGMIVCDTLFHLFPEAKEG 73
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LTR++S V+ + ++A KLGL YL LL + + S+A
Sbjct: 74 DLTRIKSVVVSRQTCTKIARKLGLQNYL-----LLGKGMGPSSQA-------------PA 115
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP---ETLKTHPVTELYEVCQKN 246
LA++ ES +GA+++D S + + L P I E + + ++L + QKN
Sbjct: 116 STLANVFESVVGAIYLD--SGFEAARRFVLNNLLPEIESSKNEESQGNYKSQLQQYAQKN 173
Query: 247 KLKVKFVDLWKESTAFH--IFIEDQLLGRGAYAP----KKEIAHNRAAKDALNNIERL 298
L +E H F +G + P K+ A RAA++AL+ + L
Sbjct: 174 HGTTPTYHLLEEKGPDHRKCFKILARIGSHQFPPAWGQTKKDAEQRAAQNALSVLRGL 231
>gi|67459568|ref|YP_247192.1| ribonuclease III [Rickettsia felis URRWXCal2]
gi|75536032|sp|Q4UKA8.1|RNC_RICFE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|67005101|gb|AAY62027.1| Ribonuclease III [Rickettsia felis URRWXCal2]
Length = 225
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 104/235 (44%), Gaps = 28/235 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E++LGY F NK LL EA + PS + YERLE++GD+VLNL++T+ F + N
Sbjct: 8 EKLLGYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVVTEILFKNFAN 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G+L ++RS V E + V KL L Y+ I+ + G
Sbjct: 68 YNEGNLAKIRSYLVCKETICVVGTKLTLKDYI-----------------IMTHGEEVAGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PVTELYEVCQ 244
D P + + E+ I A+++D N I+ + +L I + L + P T L E Q
Sbjct: 111 RDNPNNIENATEALIAAIYLDSN--IETTRNIIGKLWAEFIKIQNLTDYDPKTALQEWAQ 168
Query: 245 KNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+ + L K A H L+ Y K+I + K+A N R L
Sbjct: 169 ASSHHLPIYRLIKREGAAHSSTFTVLVKVKDY---KQIGTGHSIKEAEKNAARKL 220
>gi|374708678|ref|ZP_09713112.1| ribonuclease III [Sporolactobacillus inulinus CASD]
Length = 242
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 36/237 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+ F N+ LL++AFT S E YERLE++GD+VL LL+++ F YP L
Sbjct: 25 FSFSFQNETLLKQAFTHSSYVNEHRRESQDDYERLEFLGDAVLELLISQHLFKNYPELSE 84
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G +T+LR+A V L + A L EE I L G
Sbjct: 85 GDMTKLRAAIVCETGLFQFASSLSF-----------EEMI------FLGRGEEVTGGRKR 127
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVCQK 245
P +LAD+ E+ +GA+++D + V + ++++ P IS + +H + ++L E Q+
Sbjct: 128 PSLLADVFEAFVGALYLD--QGLQEVERFLEKVVYPRISDGSF-SHVMDYKSQLQETVQR 184
Query: 246 NKLKVKFVDLWKEST-------AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
L +L E H+ + +++G+G KK+ + AA AL N+
Sbjct: 185 KNLGELDYELISEKGPAHHREFTSHVLLNSEVIGKGKGHSKKD-SEQSAASKALRNL 240
>gi|350270970|ref|YP_004882278.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
gi|348595812|dbj|BAK99772.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
Length = 235
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-----ERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E + Y F N LLEEA S R S ERLE++GDSVL + + F +P+
Sbjct: 13 ETKMNYTFQNPALLEEALNHSSYANEHRSRRMNSNERLEFLGDSVLGFVTAEFLFLQHPD 72
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G LTR+R+A V + L VA KL L +YL+ K EE + G
Sbjct: 73 LPEGDLTRIRAALVCEQSLYEVARKLELGRYLKLGKG--EE---------------AGGG 115
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEV 242
+ +LAD E+ AV++D I + L E ++ TEL E+
Sbjct: 116 RERTSILADATEAVFAAVYLD--GGITAASALIHRCLLDAEREEVVEERRRDFKTELQEL 173
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+ +V + E H + + ++G G KKE A AAK A+ +
Sbjct: 174 VQRKANQVLLYRMAGEKGPDHDKTFLAEVLLNGMVIGAGGGHSKKE-AEQSAAKAAMEEL 232
Query: 296 E 296
+
Sbjct: 233 Q 233
>gi|313844119|ref|YP_004061782.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus
OlV1]
gi|312599504|gb|ADQ91526.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus
OlV1]
Length = 230
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 36/232 (15%)
Query: 64 NANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFF----SYERLEYVGDSVLNLLLTKEQ 119
N N D E+++G + N +L AFT S + + S+E LE++GDSVL ++TK
Sbjct: 2 NFNQQDIEKLVGTKIKNLSLYHRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKFL 61
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F Y G LT+ R+ V +E LA +A+K+GL+ + ++D
Sbjct: 62 FDRYEERQEGFLTKARTKLVRSETLADIALKMGLNNMV-----------------LMDEK 104
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKV-----FKELLKPMISPETLK 232
N + PK+L D+ E+ +GA+++D + + V ++ F +L K MI + K
Sbjct: 105 GMRNNWNNNPKILEDVFEALVGAIYMDLGLLHAKEFVLRIYNDPNFIDLNKIMID-DNFK 163
Query: 233 THPVTELYEVCQKNKLKV-KFVDLWKESTAFHI--FIEDQLLGRGAYAPKKE 281
H L + CQ + + ++ + F+I +I Q GRG KK+
Sbjct: 164 DH----LMKYCQIMNIPLPEYRVVGHHEGIFYIDTYINGQFGGRGEAKSKKQ 211
>gi|168184661|ref|ZP_02619325.1| ribonuclease III [Clostridium botulinum Bf]
gi|237795890|ref|YP_002863442.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
gi|182672267|gb|EDT84228.1| ribonuclease III [Clostridium botulinum Bf]
gi|229262399|gb|ACQ53432.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
Length = 234
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 78 FNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
F N+ LL+ A T S + YERLE++GDSVL L++++ + Y + G LTR
Sbjct: 19 FKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 78
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
R+ V L +A + L YL+ +K E++ G + +LAD
Sbjct: 79 RAIIVCENSLYEIAKRWDLGLYLQMSKG---EEL--------------TGGRERVSILAD 121
Query: 195 IVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKF 252
VES I A+++D + + + V K FKE+++ + E + + T V Q N L + +
Sbjct: 122 CVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINY 181
Query: 253 VDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L K+ H + I++++ G G KKE N AA++AL N+
Sbjct: 182 -ELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQN-AAREALKNL 229
>gi|73541939|ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134]
gi|90101640|sp|Q46Z18.1|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|72119352|gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134]
Length = 256
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 23/200 (11%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
NLD ++ LGYRF+ LL++A T S + ERLE++GDSVLN + F ++
Sbjct: 2 NLDALQQRLGYRFSKPELLQQALTHRSHSAQH--NERLEFLGDSVLNCAVADMLFGMFGK 59
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
L G L+R+R+ V + L +A L L + LR + L+ +G
Sbjct: 60 LDEGDLSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELK-----------------SGG 102
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
P +LAD +E+ +GAVF+D ++ ++ K++ +L+ + P TL T L E
Sbjct: 103 FRRPSILADALEAIVGAVFLDAGFEAARTLIRKLYIPILE-QVDPRTLGKDAKTLLQEYL 161
Query: 244 QKNKLKVKFVDLWKESTAFH 263
Q +K+ + ++ A H
Sbjct: 162 QGHKIALPQYNVIATHGAAH 181
>gi|399545692|ref|YP_006559000.1| ribonuclease 3 [Marinobacter sp. BSs20148]
gi|399161024|gb|AFP31587.1| Ribonuclease 3 [Marinobacter sp. BSs20148]
Length = 229
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F ++ L A T S + + ERLE++GDS++N+++ + F +P G L+R
Sbjct: 14 IGYQFKSQERLLLALTHRSFGNQ--NNERLEFLGDSIVNMVIAEHLFRRFPKAREGQLSR 71
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V LA + + L YLR L+ +G +LA
Sbjct: 72 LRARMVKGVTLAEIGREFDLGSYLRLGSGELK-----------------SGGFRRESILA 114
Query: 194 DIVESTIGAVFID-----CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
D VES IGA+++D C + I + W F L+ + +T K P T L E Q +
Sbjct: 115 DAVESVIGAIYLDSDFVTCQAQI-LRW--FDLRLQNLDLQDTQK-DPKTRLQEYLQSRQF 170
Query: 249 -----KVKFVDLWKESTAFHIFIEDQLLGRGAYAP--KKEIAHNRAAKDALNNI 295
V+ VD + FHI LGR + IA +AA++AL +
Sbjct: 171 PLPIYDVQAVDGEAHNQTFHISCALSSLGRKTTGSGNSRRIAEQQAARNALKEL 224
>gi|417315456|ref|ZP_12102132.1| ribonuclease III [Listeria monocytogenes J1816]
gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes J1816]
Length = 222
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 36/232 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPK---KEIAHN 285
Q+++ + D+ E+ H + + Q+LG+G+ K ++ HN
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRQKNKQNKVRHN 220
>gi|394988699|ref|ZP_10381534.1| hypothetical protein SCD_01104 [Sulfuricella denitrificans skB26]
gi|393792078|dbj|GAB71173.1| hypothetical protein SCD_01104 [Sulfuricella denitrificans skB26]
Length = 224
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 31/235 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+GY F + LL A T R + ERLE++GDSVL+ + + L+ + G
Sbjct: 10 IGYEFKDPALLRRALT-----HRSYGMPHNERLEFLGDSVLSCAIATHLYHLHTRVQEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+R+R+ V L+ +A L L L+ L E +++ +G P
Sbjct: 65 LSRMRAHLVKELTLSEIASSLNLGDCLK----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LAD +E+ IGAV++D S+ ++ ++F+ L+K + P+TL P T L E Q KL
Sbjct: 108 ILADTLEAIIGAVYLDGGFASAEQMIARLFEPLMKGL-DPKTLGKDPKTLLQEYLQGRKL 166
Query: 249 KV---KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN 300
+ + + E+ H +E + G A ++ A + A ++ ++LN
Sbjct: 167 PLPSYTVLSISGEAHEQHFEVECAIPDLGVRACGGGVSRRSAEQQAAGSVMQILN 221
>gi|313897603|ref|ZP_07831145.1| ribonuclease III [Clostridium sp. HGF2]
gi|373121991|ref|ZP_09535858.1| ribonuclease III [Erysipelotrichaceae bacterium 21_3]
gi|422329410|ref|ZP_16410435.1| ribonuclease III [Erysipelotrichaceae bacterium 6_1_45]
gi|312957555|gb|EFR39181.1| ribonuclease III [Clostridium sp. HGF2]
gi|371657022|gb|EHO22336.1| ribonuclease III [Erysipelotrichaceae bacterium 6_1_45]
gi|371664970|gb|EHO30139.1| ribonuclease III [Erysipelotrichaceae bacterium 21_3]
Length = 227
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 104/231 (45%), Gaps = 33/231 (14%)
Query: 78 FNNKNLLEEAFTDPSCPERFFSY----ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+++K L+ +A S SY ERLE++GD+VL L TK+ F L P L G +T
Sbjct: 15 YSDKKLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTKKLFLLEPELSEGQMTT 74
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V E LA +LGL KYL +L G +LA
Sbjct: 75 LRAQLVCEEALAEYNRQLGLGKYL-----------------MLGVGEEKTGGRQRDSILA 117
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-PETLKTHPV-TELYEVCQKNKLKVK 251
D+ E+ +GAVF+D ++ + + ++ P IS P++ K T+L E Q + K
Sbjct: 118 DMFEALLGAVFLD--QGMEAIDSILSAVVTPAISRPKSEKVIDYKTKLQEYIQSDSRKTV 175
Query: 252 FVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ S + + ++D LGRG KK A AAKDA +
Sbjct: 176 HYETVNVSGPSNKPEFEVIVMLDDINLGRGKGFSKKR-AEQMAAKDAFEKM 225
>gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82]
gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164]
gi|421465513|ref|ZP_15914200.1| ribonuclease III [Acinetobacter radioresistens WC-A-157]
gi|421854666|ref|ZP_16287051.1| ribonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82]
gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164]
gi|400203780|gb|EJO34765.1| ribonuclease III [Acinetobacter radioresistens WC-A-157]
gi|403189681|dbj|GAB73252.1| ribonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 230
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 108/236 (45%), Gaps = 34/236 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F LL+ A T S ++ +YERLE++GDS+L +++ + YP G LTR
Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKY-NYERLEFLGDSLLGMIIANYLYHAYPFENEGRLTR 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 76 MRATLVRQEALGKIANDLKLSQCL-----------------ILSTGELKSGGHHRESILA 118
Query: 194 DIVESTIGAVFIDCNS---SIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA++IDC DIV K + L + + LK P + L E Q K +
Sbjct: 119 DTVEAIIGAIYIDCGELKILQDIVLKWYGPYLNNIEPTDQLKD-PKSRLQEYLQARKKPL 177
Query: 251 ---KFVDLWKESTAFHIFIE------DQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ VD+ ++ H +E + +G G+ + A AA + L +E+
Sbjct: 178 PVYEVVDIQGDAPNQHFKVECSVDSLPKFIGEGS---SRRFAEQAAAAEILKLLEQ 230
>gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii]
Length = 233
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 19/137 (13%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
E LG++FNN LL+ A T C + ERLE++GDSVL ++ E + P G L
Sbjct: 9 ERLGHQFNNLELLKIALT--HCSSGADNNERLEFLGDSVLGFIIASELYQRRPQAREGDL 66
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
+R+R++ VN ++LA+++ KLG+++YL+ L +G +
Sbjct: 67 SRMRASMVNGDELAQMSTKLGINEYLQ-----------------LGVGEQKSGGKRRRSI 109
Query: 192 LADIVESTIGAVFIDCN 208
LAD +E+ +GA++ID
Sbjct: 110 LADALETIVGAIYIDAG 126
>gi|384261139|ref|YP_005416325.1| RNAse III [Rhodospirillum photometricum DSM 122]
gi|378402239|emb|CCG07355.1| RNAse III [Rhodospirillum photometricum DSM 122]
Length = 252
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 27/226 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+ +LG+RF + LL+ A T S R SYERLE++GD VL+L++ + +PN G+
Sbjct: 36 QNVLGHRFTDVTLLDRALTHRSREGRP-SYERLEFLGDRVLSLVVADLLYTRFPNEDEGA 94
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L R + V + +ARVA LGL + +R + D SN P
Sbjct: 95 LARRHAHLVRQDTVARVASALGLGERMR------------VARGEADLGAQSN-----PS 137
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE-TLKTHPVTELYEVCQKNKLK 249
+L D+ E+ +GA++ D ++ +V + P++ + T T L E Q L
Sbjct: 138 LLCDVCEAVLGALYRD--GGMEQARRVISQWWSPLVEEDPTPPRDAKTALQEWAQGRGLP 195
Query: 250 VKFVDLWKESTAFH--IF-IEDQLLGRGAYA---PKKEIAHNRAAK 289
+ D H +F + + G GA A P K IA AA+
Sbjct: 196 LPAYDEESREGPAHKPVFTVRVSVQGHGAEAASGPSKRIAEQAAAR 241
>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
Length = 249
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 77/151 (50%), Gaps = 32/151 (21%)
Query: 83 LLEEAFTDPSCPERFFSYE--------RLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
LLE AFT R F+YE RLE++GDSVL +++T+ F +P+L G L +L
Sbjct: 31 LLEHAFT-----HRSFAYENGGLPTNERLEFLGDSVLGVIVTESLFRNHPDLSEGRLAKL 85
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
R+A VN LA VA L L KYLR L + G D +LAD
Sbjct: 86 RAAVVNMRALAGVARDLKLGKYLR-----------------LGRGEEATGGRDKSSILAD 128
Query: 195 IVESTIGAVFIDCNSSI--DIVWKVFKELLK 223
VE+ IGAV++D + +V +F +L++
Sbjct: 129 CVEALIGAVYLDRGFEVAGRVVHTLFDDLME 159
>gi|29654794|ref|NP_820486.1| ribonuclease III [Coxiella burnetii RSA 493]
gi|161830652|ref|YP_001597345.1| ribonuclease III [Coxiella burnetii RSA 331]
gi|30581027|sp|P51837.2|RNC_COXBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043306|sp|A9N942.1|RNC_COXBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29542062|gb|AAO91000.1| ribonuclease III [Coxiella burnetii RSA 493]
gi|161762519|gb|ABX78161.1| ribonuclease III [Coxiella burnetii RSA 331]
Length = 233
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 19/137 (13%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
E LG++FNN LL+ A T C + ERLE++GDSVL ++ E + P G L
Sbjct: 9 ERLGHQFNNLELLKIALT--HCSSGADNNERLEFLGDSVLGFIIASELYQRRPQAREGDL 66
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
+R+R++ VN ++LA+++ KLG+++YL+ L +G +
Sbjct: 67 SRMRASMVNGDELAQMSTKLGINEYLQ-----------------LGVGEQKSGGKRRRSI 109
Query: 192 LADIVESTIGAVFIDCN 208
LAD +E+ +GA++ID
Sbjct: 110 LADALEAIVGAIYIDAG 126
>gi|389691083|ref|ZP_10179976.1| ribonuclease III [Microvirga sp. WSM3557]
gi|388589326|gb|EIM29615.1| ribonuclease III [Microvirga sp. WSM3557]
Length = 236
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 67 NLDEE-EILGYRFNNKNLLEEAFTDPSCPERFF-SYERLEYVGDSVLNLLLTKEQFFLYP 124
NLDE LGYRF LL+EA T S P+ SY+RLE++GD VL L + + +P
Sbjct: 7 NLDELLSKLGYRFEKPELLDEALTHVSAPQAAGQSYQRLEFLGDRVLGLAIAGLLYRKFP 66
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
P G L+R + V E A +AI + YL+ EA HS G
Sbjct: 67 GAPEGELSRRLAELVRRESCAEIAIAWDVGPYLKLGA----------GEA------HS-G 109
Query: 185 LVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+LAD+ E+ IGAVF+D ++ +V + F+ LL+ +P P + L E
Sbjct: 110 ERRNQTILADVCEAIIGAVFLDGGYEAACALVERSFQSLLE---APRRPLRDPKSALQEW 166
Query: 243 CQKNKL 248
Q L
Sbjct: 167 AQGQGL 172
>gi|365902819|ref|ZP_09440642.1| ribonuclease III [Lactobacillus malefermentans KCTC 3548]
Length = 232
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 107/236 (45%), Gaps = 34/236 (14%)
Query: 78 FNNKNLLEEAFTDPSC----PERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
F +++LL+EA T S P + YER+E++GD+V+ ++++ F YP LP G LT
Sbjct: 17 FKDESLLDEALTQASYVNEHPNQNLKFYERIEFLGDAVMQFVVSEYIFKRYPQLPQGRLT 76
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
RLR+A VN E A A + + Y+R K RE +L
Sbjct: 77 RLRAAMVNEESFASFARECHFNDYIRLGKGEELANARE-----------------RDSLL 119
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH--PVTELYEVCQKNKLKV 250
DI ES +GAV++D I V ++++ P + + TEL E+ QKN
Sbjct: 120 CDIFESFVGAVYMD--QGIKKVITFAEQVIYPKLDEGRFDDYFDHKTELQEMVQKNGPVS 177
Query: 251 KFVDLWKEST-------AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
L E+ + + LG G KK A RAAK AL+ ++R +
Sbjct: 178 IDYQLLDENGPENDRVFKVAVLVNKVELGVGEAHSKKH-AEQRAAKVALDQLKRKM 232
>gi|411120253|ref|ZP_11392629.1| ribonuclease III [Oscillatoriales cyanobacterium JSC-12]
gi|410710409|gb|EKQ67920.1| ribonuclease III [Oscillatoriales cyanobacterium JSC-12]
Length = 225
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 103/235 (43%), Gaps = 36/235 (15%)
Query: 77 RFNNKNLLEEAFTDPSC----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
RF N LL++A T S P ERLE++GD+VLN L + + +P P G LT
Sbjct: 8 RFQNSALLQQALTHRSYVNEHPSETLHNERLEFLGDAVLNFLSGEFLYKRFPEKPEGELT 67
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVL 192
LR++ V+ +LA+ AI L L LR L +G P +L
Sbjct: 68 PLRASLVDASQLAKFAIALELGTQLR-----------------LGRGAEQDGGRTNPNLL 110
Query: 193 ADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT-HPV----TELYEVCQKNK 247
+ E+ +GA F+D S I +V + ++ +TL+ P + E Q N
Sbjct: 111 SSAFEAIVGAYFLDTGSDIHLVRMYVVPFFESVV--DTLEVIAPAINYKSRFQEWAQANH 168
Query: 248 LKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ + ES H +F+ + GRG KK+ A AA+DAL+ +
Sbjct: 169 RENPTYAIAHESGPDHAKTYVTEVFVNGKFYGRGT-GRKKQDAEKDAARDALDRL 222
>gi|148380412|ref|YP_001254953.1| ribonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|148289896|emb|CAL84004.1| putative ribonuclease III [Clostridium botulinum A str. ATCC 3502]
Length = 237
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 78 FNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
F N+ LL+ A T S + YERLE++GDSVL L++++ + Y + G LTR
Sbjct: 22 FKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 81
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
R+ V L +A + L YL+ +K E++ G + +LAD
Sbjct: 82 RAIIVCENSLYEIAKRWDLGFYLQMSKG---EEL--------------TGGRERVSILAD 124
Query: 195 IVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKF 252
VES I A+++D + + + V K FKE+++ + E + + T V Q N L + +
Sbjct: 125 CVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINY 184
Query: 253 VDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L K+ H + I++++ G G KKE N AA++AL N+
Sbjct: 185 -ELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQN-AAREALKNL 232
>gi|170761820|ref|YP_001787766.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
gi|169408809|gb|ACA57220.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
Length = 234
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 78 FNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
F N+ LL+ A T S + YERLE++GDSVL L++++ + Y + G LTR
Sbjct: 19 FKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 78
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
R+ V L +A + L YL+ +K E++ G + +LAD
Sbjct: 79 RAIIVCENSLYEIAKRWDLGFYLQMSKG---EEL--------------TGGRERVSILAD 121
Query: 195 IVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKF 252
VES I A+++D + + + V K FKE+++ + E + + T V Q N L + +
Sbjct: 122 CVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINY 181
Query: 253 VDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L K+ H + I++++ G G KKE N AA++AL N+
Sbjct: 182 -ELLKQEGPPHRRRFFTNVTIDNEIRGTGIGYSKKEAEQN-AAREALKNL 229
>gi|21672530|ref|NP_660597.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|25009123|sp|Q8K9R1.1|RNC_BUCAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|21623153|gb|AAM67808.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 226
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 35/234 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ILGY F ++ LL++A T S + ERLE++GDS+L+ ++ + +P + G
Sbjct: 10 QQILGYTFTHQELLKQALTHRSASSK--HNERLEFLGDSILSFVIANALYQHFPYIDEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++R+R+ V LA +A + L +YL+ + L+ +G
Sbjct: 68 MSRMRATLVRGNTLAEIAYEFDLGEYLQLGQGELK-----------------SGGFRRES 110
Query: 191 VLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LA+ VE+ IG++++D N +++ K +++ L+ ISP + P T L E Q L
Sbjct: 111 ILANTVEALIGSIYLDSNIKTVEELILKWYEKRLEK-ISPGDTQKDPKTRLQEYLQSKHL 169
Query: 249 KVK---FVDLWKES--TAFHIFIE-----DQLLGRGAYAPKKEIAHNRAAKDAL 292
+ V+++ E+ F I E +G+G K E AA+ AL
Sbjct: 170 SLPSYFIVEVYGEAHNQLFTIHCEVSTLSTSFIGKGTSRRKAE---QDAARKAL 220
>gi|338708664|ref|YP_004662865.1| ribonuclease III [Zymomonas mobilis subsp. pomaceae ATCC 29192]
gi|336295468|gb|AEI38575.1| ribonuclease III [Zymomonas mobilis subsp. pomaceae ATCC 29192]
Length = 222
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 22/172 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+ LG++ + L A T PS Y+RLE++GD VL L++ + L+PN P G
Sbjct: 11 EQTLGHKPKDPALFFRAMTHPSHGNS--DYQRLEFLGDRVLGLVIAHWLYQLFPNEPEGK 68
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+R ++ V+ A VA +GL ++LR L +Q R+ A D
Sbjct: 69 LSRRLNSLVSGASCAGVARVVGLPQWLR-----LGKQARDDGAAASD------------N 111
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-PETLKTHPVTELYE 241
VL D++E+ IGA+F++ S +D KV + +++ E+ HP + L E
Sbjct: 112 VLGDVMEALIGAIFLE--SGVDAAGKVIHKYWASLVTEQESAPKHPKSALQE 161
>gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|403745343|ref|ZP_10954281.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
gi|403121571|gb|EJY55864.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
Length = 241
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPN 125
++I+ +RF + NLL++AFT S ERLE++GD+VL L+++ + YP
Sbjct: 9 QDIVDFRFTDLNLLKQAFTHASYRNEHRKAHVEDNERLEFLGDAVLELIISDFLYHTYPR 68
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G LTR+R+A V L A +L +++R + EE+ +G
Sbjct: 69 LPEGELTRMRAAIVCEPSLVVFARRLSFEQFIRLGRG--EER---------------SGG 111
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
P +LAD+ E+ +GA++ID I+ V K + P ++ + T L E+ Q+
Sbjct: 112 RSRPALLADVFEAFLGALYID--QGIEAVRKFVHTHVIPHLADARVGVDYKTALQELVQQ 169
Query: 246 N 246
Sbjct: 170 R 170
>gi|158705946|sp|Q0UL22.2|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease DCL2; Includes: RecName:
Full=ATP-dependent helicase DCL2
Length = 1399
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 83/173 (47%), Gaps = 39/173 (22%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E ++GY F K LL EA T S P SYERLE++GD+VL+ +++K P L
Sbjct: 1098 ETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAHSPELSH 1157
Query: 129 GSLTRLRSANVNTEKLA-RV------------------AIKLGLHKYLRHNKPLL----- 164
+ +R+A VN LA R+ + K + ++LR P L
Sbjct: 1158 QKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQFLRSGSPSLNANRD 1217
Query: 165 -----EEQIREFSEAILD------YPLHSNGLVDAPKVLADIVESTIGAVFID 206
EQ+R+ E I+ +P H L D PK L+D+VES IGAV+ID
Sbjct: 1218 NALRQHEQVRD--EIIIGLNEAARFPWHLFALTDPPKFLSDMVESVIGAVYID 1268
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+Y+RLE++GD +L + T P P LT + V+ LAR I GL +++
Sbjct: 945 NYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFMI 1004
Query: 159 HNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVF 204
+ ++ +L + + K++ADI+ES IGA +
Sbjct: 1005 TKSFTGAKWAPRYAGDLLAETGPAVKEERSSKLIADIIESLIGACY 1050
>gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|153208682|ref|ZP_01946929.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
gi|212219222|ref|YP_002306009.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
gi|226741367|sp|B6J4J9.1|RNC_COXB1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|120575793|gb|EAX32417.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
gi|212013484|gb|ACJ20864.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
Length = 233
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 19/137 (13%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
E LG++FNN LL+ A T S + ERLE++GDSVL ++ E + P G L
Sbjct: 9 ERLGHQFNNLELLKIALTHRSSGAD--NNERLEFLGDSVLGFIIASELYQRRPQAREGDL 66
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
+R+R++ VN ++LA+++IKLG+++YL+ L +G +
Sbjct: 67 SRMRASMVNGDELAQMSIKLGINEYLQ-----------------LGVGEQKSGGKRRRSI 109
Query: 192 LADIVESTIGAVFIDCN 208
LAD +E+ +GA++ID
Sbjct: 110 LADALEAIVGAIYIDAG 126
>gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|308068621|ref|YP_003870226.1| ribonuclease III [Paenibacillus polymyxa E681]
gi|310641509|ref|YP_003946267.1| ribonuclease iii [Paenibacillus polymyxa SC2]
gi|386040540|ref|YP_005959494.1| ribonuclease III [Paenibacillus polymyxa M1]
gi|305857900|gb|ADM69688.1| Ribonuclease III (RNase III) [Paenibacillus polymyxa E681]
gi|309246459|gb|ADO56026.1| Ribonuclease III [Paenibacillus polymyxa SC2]
gi|343096578|emb|CCC84787.1| ribonuclease III [Paenibacillus polymyxa M1]
Length = 232
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 77 RFNNKNLLEEAFTDPS-CPERFFSY----ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
+FNN+ LL++AFT S E FS ERLE++GD+VL L ++++ + YPN P G L
Sbjct: 15 QFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLYNQYPNRPEGEL 74
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
T+LR+A V L + A+ L +Y+ +L G P +
Sbjct: 75 TKLRAAIVCEPSLVKFAVGLEFGQYV-----------------LLGKGEELTGGRTRPAL 117
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI--SPETLKTHPVTELYEVCQKNKLK 249
LAD+ E+ +GA+++D ++ V + + P I + + + TEL E+ Q + +
Sbjct: 118 LADVFEAFVGALYLD--QGLEAVRSFLERYIFPQIVLNGKLQMSDFKTELQELTQHHNMG 175
Query: 250 VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
+ + +E H ++++ + LG G KK
Sbjct: 176 MLEYKIVEERGPAHEREFVAEVYMDSERLGAGTGRSKK 213
>gi|187928023|ref|YP_001898510.1| ribonuclease III [Ralstonia pickettii 12J]
gi|238691793|sp|B2U981.1|RNC_RALPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|187724913|gb|ACD26078.1| Ribonuclease III [Ralstonia pickettii 12J]
Length = 256
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 110/244 (45%), Gaps = 37/244 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LGYRF+ LL++A T S ERLE++GDS+LN + + ++ L G
Sbjct: 7 QQRLGYRFSKPELLQQALTHRS--HSAMHNERLEFLGDSILNCAVADMLYGMFGKLDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+R+R+ V + L +A L L LR L E +++ +G P
Sbjct: 65 LSRVRANLVKQQALYEIAQMLQLPDALR----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNK 247
+LAD +E+ GAVF+D D + ++L P+ + P TL T L E Q +K
Sbjct: 108 ILADALEAIFGAVFLD--GGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHK 165
Query: 248 LKVKFVDLWKESTAFH----------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ + + A H +E ++ G GA + A AAK AL+ R
Sbjct: 166 IALPLYTVVATHGAAHNQQFEVECSIPKLEIRVSGSGA---SRRAAEQSAAKLALDEAHR 222
Query: 298 LLNE 301
L+ +
Sbjct: 223 LVPQ 226
>gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|402574105|ref|YP_006623448.1| ribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255302|gb|AFQ45577.1| ribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 261
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 28/201 (13%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
+RLE++GD++L+ ++ + + YP+ P G LT++R+A VN LAR A ++ L + L
Sbjct: 73 QRLEFLGDAILDFIIAEYLYLSYPDRPEGELTKMRAAVVNETTLARKAHEIELGQELLLG 132
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
K L RE P +LAD E+ IGA+++ +V E
Sbjct: 133 KGELVSGGRE-----------------RPSILADAWEAVIGAIYLQYG--FQEARRVILE 173
Query: 221 LLKPMISPETLKTHP--VTELYEVCQKNKLKVKFVDLWKEST------AFHIFIEDQLLG 272
LLKP I + T L E Q+++ +V + L +E +F+E L+G
Sbjct: 174 LLKPAIEEVAKGNYGDYKTVLQEKAQRDEKEVSYQILLEEGPDHNKCFTAGVFVEGDLMG 233
Query: 273 RGAYAPKKEIAHNRAAKDALN 293
+G KKE A AAK L+
Sbjct: 234 KGTGRTKKE-AEQHAAKQVLD 253
>gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALTM-SNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB]
gi|90101622|sp|Q47EF7.1|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB]
Length = 222
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 35/234 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
L + F+++ L A T R F ERLE++GD VL+ ++ + +P+LP G
Sbjct: 10 LNHCFSDQALFRTALT-----HRSFGTPNNERLEFLGDGVLDFVIAASLYHRFPDLPEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V E L R+A++L + +LR L E +++ +G P
Sbjct: 65 LSRLRANLVRQETLHRLALELNIGAFLR----LGEGELK-------------SGGAQRPS 107
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LAD +E+ GA+++D +S ++ K+F LL + P + T L E Q K
Sbjct: 108 ILADALEALFGAIYLDAGFEASRAVIEKLFAPLLDDL-KPGQFQKDAKTRLQEWLQGRKK 166
Query: 249 KVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ L + + A H IE L + + IA AA+ AL +
Sbjct: 167 ALPRYHLLEATGAAHEQRFEIACEIESPALRTVGHGSSRRIAEQVAAEKALKEL 220
>gi|421862105|ref|ZP_16293932.1| dsRNA-specific ribonuclease [Paenibacillus popilliae ATCC 14706]
gi|410828360|dbj|GAC44369.1| dsRNA-specific ribonuclease [Paenibacillus popilliae ATCC 14706]
Length = 232
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPN 125
++ L F N+ LL++AFT S RF + ERLE++GD+VL L +++ F P
Sbjct: 9 QQKLNVHFRNRQLLKQAFTHASYVNEHRFGQHQDNERLEFLGDAVLELTVSEFLFHHCPT 68
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
P G LT++R++ V L + A +L KY+ +L G
Sbjct: 69 RPEGELTKMRASIVCEPSLVKFANQLQFGKYV-----------------LLGKGEELTGG 111
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D ++ V + ++ + P IS + L+T+ T+L E+
Sbjct: 112 RTRPALLADVFESFIGALYLD--QGLEPVREFLRKHIFPQISLDGKLQTNDYKTQLQELT 169
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q + L + +E H + + + LGRG KKE A +AA ++L ++
Sbjct: 170 QHHNLGALEYRIVEERGPAHEREFVSEVHMGETCLGRGVGRSKKE-AEQQAAAESLEHL 227
>gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|428224460|ref|YP_007108557.1| RNAse III [Geitlerinema sp. PCC 7407]
gi|427984361|gb|AFY65505.1| RNAse III [Geitlerinema sp. PCC 7407]
Length = 231
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 37/233 (15%)
Query: 79 NNKNLLEEAFTDPSC----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
++ LL A T S PE ERLE++GD+VL L+ + YP +P G +TR
Sbjct: 11 RDEGLLRRALTHRSYVNEHPEAGDDNERLEFLGDAVLGFLVGALLYRRYPTMPEGEMTRR 70
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
RS V+ +LA+VAI L L +LR + + + R+ P +L+
Sbjct: 71 RSMLVDQTQLAKVAIALDLGNHLRLGRGVAKADGRQ-----------------NPSLLSS 113
Query: 195 IVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL-----K 249
E+ IGA F+D S ID V + L P++ E + + P + Q+ L +
Sbjct: 114 AFEAVIGAYFLD--SGIDAVQVYVERLFGPLLQ-EWVDSQPSIDAKTYLQQWALAQETHQ 170
Query: 250 VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ L +S H ++I D+ G G K+E A RAA+ AL +
Sbjct: 171 LPRYQLVNQSGPDHAKTFTLSVWIGDECYGIGCDRSKQE-ASKRAAEAALRKL 222
>gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
ERLE +GDS L +T + Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|328769139|gb|EGF79183.1| hypothetical protein BATDEDRAFT_25727 [Batrachochytrium
dendrobatidis JAM81]
Length = 380
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 38/222 (17%)
Query: 100 YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRH 159
++RLE++GD+VL+ L + + + P L PG L++L + V + LA V+I++GL KY+RH
Sbjct: 61 FQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQIGLVKYIRH 120
Query: 160 NKPLLEEQIREFSEAILDY---------PLHSNGLV------------DAPKVLADIVES 198
+E I F+ + Y P+ ++ APK D+ ES
Sbjct: 121 TDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARLFWNKGNTAPKTAGDVYES 180
Query: 199 TIGAVFIDCNSSIDIVWKVFK-ELLKP-------MISPETL-KTHPVTEL----YEVCQK 245
+GAVF+D I V +F ++ P + E++ +PV EL Y + +
Sbjct: 181 MLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELRTLSYSLFKC 240
Query: 246 NKLKVKF-VDLWKESTA---FHIFIEDQLLGRGAYAPKKEIA 283
K+ + L +TA +H + Q LG G KK A
Sbjct: 241 VKIDYTYEYGLHGGTTATITYHNMVLAQCLGTGQRDAKKAAA 282
>gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
Length = 243
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 66 NNLDEEEI---LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFL 122
NN+ E + LGY+F N + L +A T S + + ERLE++GDS+LN + K F
Sbjct: 19 NNMQLERLQKKLGYQFTNLDYLLQALTHRSAGAK--NNERLEFLGDSILNFAIGKALFEK 76
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
+P G L+R+R+ V + LA +A + GL +Y++ L+
Sbjct: 77 FPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELK----------------- 119
Query: 183 NGLVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELY 240
+G +L+D VE+ I A+++D + +I+ V +++LL M P + P T L
Sbjct: 120 SGGYRRESILSDCVEAIIAAIYLDAGMDKAIEQVHLWYQDLLAEM-KPGDAQKDPKTRLQ 178
Query: 241 EVCQKNKL 248
E Q KL
Sbjct: 179 EFLQGRKL 186
>gi|153930813|ref|YP_001384630.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|153937224|ref|YP_001388147.1| ribonuclease III [Clostridium botulinum A str. Hall]
gi|153940610|ref|YP_001391753.1| ribonuclease III [Clostridium botulinum F str. Langeland]
gi|168180664|ref|ZP_02615328.1| ribonuclease III [Clostridium botulinum NCTC 2916]
gi|226949808|ref|YP_002804899.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|384462760|ref|YP_005675355.1| ribonuclease III [Clostridium botulinum F str. 230613]
gi|387818676|ref|YP_005679023.1| ribonuclease III [Clostridium botulinum H04402 065]
gi|152926857|gb|ABS32357.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|152933138|gb|ABS38637.1| ribonuclease III [Clostridium botulinum A str. Hall]
gi|152936506|gb|ABS42004.1| ribonuclease III [Clostridium botulinum F str. Langeland]
gi|182668630|gb|EDT80609.1| ribonuclease III [Clostridium botulinum NCTC 2916]
gi|226841844|gb|ACO84510.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|295319777|gb|ADG00155.1| ribonuclease III [Clostridium botulinum F str. 230613]
gi|322806720|emb|CBZ04289.1| ribonuclease III [Clostridium botulinum H04402 065]
Length = 234
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 78 FNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
F N+ LL+ A T S + YERLE++GDSVL L++++ + Y + G LTR
Sbjct: 19 FKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 78
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
R+ V L +A + L YL+ +K E++ G + +LAD
Sbjct: 79 RAIIVCENSLYEIAKRWDLGFYLQMSKG---EEL--------------TGGRERVSILAD 121
Query: 195 IVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKF 252
VES I A+++D + + + V K FKE+++ + E + + T V Q N L + +
Sbjct: 122 CVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINY 181
Query: 253 VDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L K+ H + I++++ G G KKE N AA++AL N+
Sbjct: 182 -ELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQN-AAREALKNL 229
>gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia]
gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia]
Length = 1731
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 98/224 (43%), Gaps = 54/224 (24%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F ++ L +A T PS P SY+ LE++GD++L+ L++ F + P
Sbjct: 1449 EHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNP 1508
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----------------- 171
G+LT LRSA VN LA + ++ LH ++ L E I +F
Sbjct: 1509 GALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHI 1568
Query: 172 --SEA-ILDYPL---------HSNGL--------------------VDAPKVLADIVEST 199
EA +L PL H+N VD PK L D++E+
Sbjct: 1569 LLEEADVLPTPLDLDDELELPHANECISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLEAL 1628
Query: 200 IGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPVTELYE 241
I A+++DC + W V L +P + T + +P+ +L E
Sbjct: 1629 IAAIYLDCR-DLRRTWDVIFRLFEPELQEFTRNVPINPIRQLIE 1671
>gi|445497932|ref|ZP_21464787.1| ribonuclease 3 [Janthinobacterium sp. HH01]
gi|444787927|gb|ELX09475.1| ribonuclease 3 [Janthinobacterium sp. HH01]
Length = 268
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 35/238 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F + LL++A T S ERLE++GDS+LN ++ + + + G L+R
Sbjct: 10 LGYTFQDAGLLQQALTHRS--HSSLHNERLEFLGDSILNCVVASILYERFVAIDEGDLSR 67
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V + L +A KL L ++LR L E +++ +G P +LA
Sbjct: 68 LRANLVKQQSLYEIAQKLELSQFLR----LGEGELK-------------SGGFRRPSILA 110
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVK 251
D +E+ +GA+F+D N + D++ + +L+ + P+TL T L E Q K+ +
Sbjct: 111 DTLEALLGAIFLDGGFNPARDVIRAFYIPILES-VDPQTLGKDAKTLLQEFLQSKKISLP 169
Query: 252 FVDLWKESTAFHIF----------IEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
++ A H + Q+ GRG + AAK AL E+ L
Sbjct: 170 LYNVVATHGAAHSQEFEIECLVPKLGIQVYGRGG---SRRAGEQAAAKLALEVAEQAL 224
>gi|340372191|ref|XP_003384628.1| PREDICTED: endoribonuclease Dicer-like [Amphimedon queenslandica]
Length = 1530
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 35/182 (19%)
Query: 76 YRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
Y F N+ LL EA T S + Y+RLE++GD++L+ L+T + + PG +T
Sbjct: 1314 YSFKNELLLIEAMTHSSYHRNDITGCYQRLEFLGDAILDYLVTCHIYQSDSSAEPGEITE 1373
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---------DYPLHSNG 184
LRSA V + A++AI L LHK L H P L ++++++++ + ++ N
Sbjct: 1374 LRSALVCNSRFAKLAISLNLHKSLCHGSPNLFNDMKKYAQSLRQREKEDMFEEMSINDND 1433
Query: 185 ------------------------LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
++ PK L+D E+ GAVFID ++ VW+ F
Sbjct: 1434 SAQAIVESIKDGDFDDDDDDDDDDDIEPPKSLSDCFEALAGAVFIDSGMNLQTVWEAFSP 1493
Query: 221 LL 222
L
Sbjct: 1494 FL 1495
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
DEE R + L+ +A T P + ERLE +GDS L L+ + + L PN
Sbjct: 1092 DEEIRYSNRGPDNCLILQALT-PRGANDSINLERLELLGDSFLKLVTSVYLYNLRPNSHE 1150
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G L+ RS V L + K G+ + + I F E + P L ++
Sbjct: 1151 GKLSEARSRRVANINLFVLGKKKGITSAILSDD--FVSGIDSFKERLTWVPPGYAALEES 1208
Query: 189 PKV----LADIVESTIGA 202
KV +AD VE+ IGA
Sbjct: 1209 HKVTDKSVADTVEALIGA 1226
>gi|332525373|ref|ZP_08401536.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
gi|332108645|gb|EGJ09869.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
Length = 241
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LG+RF L+ A T S ERLE++GDSVLN ++ + + G
Sbjct: 9 QQRLGHRFTRTALMTRALTHRSWGAEH--NERLEFLGDSVLNCAVSALLYERFSGSDEGD 66
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LTR+R+ V + L RVA+ LGL + LR + E ++R G P
Sbjct: 67 LTRVRAHLVREDSLHRVALTLGLSEVLR----MSEGEMR-------------GGGAQRPS 109
Query: 191 VLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LAD VE+ IGA+F+D + ++ V ++F E++ + TEL E Q +L
Sbjct: 110 ILADAVEALIGAIFLDGGFDPALATVRRLFGEVIA-ATEADAWSKDAKTELQEWLQARRL 168
Query: 249 KV 250
V
Sbjct: 169 PV 170
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 40/244 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPN 125
+ +LGYRF+ LLEEA T S S ERLE++GD+VL+L++++ +P
Sbjct: 11 QRLLGYRFHQPRLLEEALTHKSYSNERRSRDRTQNERLEFLGDAVLSLVMSEYLAAEFPG 70
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G L++L++ V+ LA+ A ++ L + LR K E++ + E HS
Sbjct: 71 SNEGGLSKLKAHLVSEASLAKAARRMKLGRLLRLGKG---EELSKGREK------HS--- 118
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPV-----TE 238
+LAD +E+ I A+++D +S +V +E +++ + P T+
Sbjct: 119 -----LLADALEALIAAIYLDGGLEASRKFTLQVLEE---ELLATRAEQARPGMEDYKTQ 170
Query: 239 LYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
L EVCQK + + +ES H + I+ + G G KKE A AAK+A
Sbjct: 171 LQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQGVMRGIGRGRSKKE-AEQMAAKEA 229
Query: 292 LNNI 295
L +
Sbjct: 230 LTQL 233
>gi|194290152|ref|YP_002006059.1| ribonuclease iii [Cupriavidus taiwanensis LMG 19424]
gi|238692743|sp|B3R1Z9.1|RNC_CUPTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|193223987|emb|CAQ69996.1| Ribonuclease III [Cupriavidus taiwanensis LMG 19424]
Length = 256
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 25/201 (12%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
NLD ++ LGYRF+ LL++A T S + ERLE++GDSVLN + + ++
Sbjct: 2 NLDALQQRLGYRFSKPELLQQALTHRSHSAQH--NERLEFLGDSVLNCAVADMLYGMFGK 59
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
L G L+R+R+ V + L +A L L LR L E +++ +G
Sbjct: 60 LDEGDLSRVRANLVKQQALYEIAQMLQLSDTLR----LGEGELK-------------SGG 102
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEV 242
P +LAD +E+ +GAVF+D + D + ++L P+ + P TL T L E
Sbjct: 103 FRRPSILADALEAIVGAVFLD--AGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEY 160
Query: 243 CQKNKLKVKFVDLWKESTAFH 263
Q +K+ + ++ A H
Sbjct: 161 LQGHKIALPQYNVIATHGAAH 181
>gi|419703845|ref|ZP_14231397.1| ribonuclease III [Mycoplasma canis PG 14]
gi|384394089|gb|EIE40535.1| ribonuclease III [Mycoplasma canis PG 14]
Length = 228
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 31/229 (13%)
Query: 79 NNKNLLEEAFTDPSC---PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLR 135
NN ++ +A T S + F+YE+LE++GDS+L+ +++ F+ G LTR R
Sbjct: 20 NNLDVFYQATTHKSFNGHEGKTFNYEKLEFLGDSILDFVVSSYIFYKNKESSQGELTRYR 79
Query: 136 SANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADI 195
S+ V TE L+ ++ K+GL K LR + E++ +++ KV ADI
Sbjct: 80 SSIVQTETLSEISKKIGLLKLLRTGPGQMHEEV-----------------IESTKVQADI 122
Query: 196 VESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE-----TLKTHPVTELYEVCQK-NKLK 249
E+ IGA+F+D + V K +E L I+ T P TEL E Q ++
Sbjct: 123 FEAMIGAIFVD--QGLIKVKKFIEEHLLSKINENNDLFITDIKDPKTELQEHFQSFSREN 180
Query: 250 VKFVDLWKESTAFHI-FIEDQLL-GRGAYAPKKEIAHNRAAKDALNNIE 296
+ ++ K + F + D+++ G G + KKE A AAK+AL ++
Sbjct: 181 ISYIVEEKGNKLFEAKAVHDKIVYGVGQGSSKKE-AETNAAKNALKKLK 228
>gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|238687533|sp|B0BUA6.1|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 223
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+F N + L +A T S + + ERLE++GDS+LN + K F +P G L+R
Sbjct: 10 LGYQFTNLDYLLQALTHRSAGAK--NNERLEFLGDSILNFAIGKALFEKFPKANEGELSR 67
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V + LA +A K GL +Y++ L+ +G +L+
Sbjct: 68 MRATLVREQTLAILARKFGLGEYMKLGAGELK-----------------SGGYRRESILS 110
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
D VE+ I A+++D + +I V +++LL M P + P T L E Q KL
Sbjct: 111 DCVEAIIAAIYLDAGMDKAIAQVHLWYQDLLAEM-KPGDAQKDPKTRLQEFLQGRKL 166
>gi|332140432|ref|YP_004426170.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
gi|327550454|gb|AEA97172.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
Length = 228
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 24/177 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY FNN+ LLE+A T S ++ ERLE++GD++L +++ + F +P +P G LTR
Sbjct: 14 IGYTFNNEALLEQALTHRSAAKQH--NERLEFLGDAILGMIIGETLFKRFPTVPEGKLTR 71
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V + LA +A + + + L L+ +G +LA
Sbjct: 72 MRSTLVKGDTLAELAKEASVGELLNLGPGELK-----------------SGGHRRSSILA 114
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP---VTELYEVCQKNK 247
D VE+ +GA+++D S +D V V L + I+ HP T L E Q K
Sbjct: 115 DAVEAILGAIYLD--SGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRK 169
>gi|402704036|ref|ZP_10852015.1| ribonuclease III [Rickettsia helvetica C9P9]
Length = 227
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 25/199 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E++LGY F NK LL EA PS + YERLE++GD+VLNL++T+ F + N
Sbjct: 8 EKLLGYSFKNKELLIEALNHPSLRQHHEYKADKDYERLEFLGDAVLNLVITEILFRNFAN 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G+L ++RS V E + V KL L Y+ I+ + G
Sbjct: 68 YNEGNLAKIRSYLVCKETICMVGAKLTLKDYI-----------------IMTHGEEVAGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PVTELYEVCQ 244
D P + + E+ I A+++D N I+ + +L I + L + P T L E Q
Sbjct: 111 RDNPNNIENATEALIAAIYLDSN--IETTHNIIGKLWAEFIKVQNLTDYDPKTALQEWTQ 168
Query: 245 KNKLKVKFVDLWKESTAFH 263
+ + L K A H
Sbjct: 169 ASDHHLPIYRLIKREGAAH 187
>gi|170754285|ref|YP_001781997.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
gi|429243878|ref|ZP_19207362.1| ribonuclease III [Clostridium botulinum CFSAN001628]
gi|169119497|gb|ACA43333.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
gi|428759084|gb|EKX81473.1| ribonuclease III [Clostridium botulinum CFSAN001628]
Length = 234
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 31/230 (13%)
Query: 78 FNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
F N+ LL+ A T S YERLE++GDSVL L++++ + Y + G LTR
Sbjct: 19 FKNEKLLDVALTHSSYANGKRNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 78
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
R+ V L +A + L YL+ +K E++ G + +LAD
Sbjct: 79 RAIIVCENSLYEIAKRWDLGFYLQMSKG---EEL--------------TGGRERVSILAD 121
Query: 195 IVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKF 252
VES I A+++D + + + V K FKE+++ + E + + T V Q N L + +
Sbjct: 122 CVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINY 181
Query: 253 VDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L K+ H + I++++ G G KKE N AA++AL N+
Sbjct: 182 -ELLKQEGPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQN-AAREALKNL 229
>gi|375308186|ref|ZP_09773473.1| ribonuclease III [Paenibacillus sp. Aloe-11]
gi|390454105|ref|ZP_10239633.1| ribonuclease III [Paenibacillus peoriae KCTC 3763]
gi|375080517|gb|EHS58738.1| ribonuclease III [Paenibacillus sp. Aloe-11]
Length = 232
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 77 RFNNKNLLEEAFTDPS-CPERFFSY----ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
+FNN+ LL++AFT S E FS ERLE++GD+VL L ++++ + YPN P G L
Sbjct: 15 QFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLYNQYPNRPEGEL 74
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
T+LR+A V L + A+ L +Y+ +L G P +
Sbjct: 75 TKLRAAIVCEPSLVKFAVGLEFGQYV-----------------LLGKGEELTGGRTRPAL 117
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI--SPETLKTHPVTELYEVCQKNKLK 249
LAD+ E+ +GA+++D ++ V + + P I + + + TEL E+ Q + +
Sbjct: 118 LADVFEAFVGALYLD--QGLEAVRSFLERYIFPQIVLNGKLQMSDFKTELQELTQHHNMG 175
Query: 250 VKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
+ + +E H ++++ + LG G KK
Sbjct: 176 MLEYRIVEERGPAHEREFVAEVYMDSERLGAGTGRSKK 213
>gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024]
gi|384955648|sp|F0KKL2.2|RNC_ACICP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024]
Length = 230
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F LL+ A T S ++ +YERLE++GDS+L +++ + YPN G LTR
Sbjct: 17 IGYQFKQLELLQLALTHRSVSHKY-NYERLEFLGDSLLGMIIANYLYHAYPNENEGRLTR 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 76 MRATLVRQEALGKIATDLQLSRCL-----------------ILSTGELKSGGHHRESILA 118
Query: 194 DIVESTIGAVFIDC---NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA+++D N DIV K + L + + LK P + L E Q K +
Sbjct: 119 DTVEAIIGAIYLDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKD-PKSRLQEYLQARKKPL 177
Query: 251 ---KFVDLWKESTAFHIFIE------DQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ VD+ ++ H +E ++ G G+ + A AA + L +E+
Sbjct: 178 PVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGS---SRRFAEQAAAAEILKLLEQ 230
>gi|336386278|gb|EGO27424.1| hypothetical protein SERLADRAFT_446652 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1267
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 19/191 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E I+G++F +LL +A T S + YERLE++GD++L ++ + F + PG
Sbjct: 957 ETIIGHKFAYPHLLAQALTHASVQGYQSTCYERLEFIGDAILEFMVIRHIFNRDDKMSPG 1016
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL-----DYPLHSNG 184
LT ++ A V+ LA V + GLH+++ + L I+ + + + +Y L +
Sbjct: 1017 VLTLMKGAMVSNSALAAVCVWSGLHEHILYESFPLAGNIQGYIDELKKKQTEEYELAARE 1076
Query: 185 L---------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETL 231
V+ PK L+D+VES IGA++I VF +LKP I+ +TL
Sbjct: 1077 QRTPGQFWLDVEPPKALSDVVESIIGAIYISDGFQPIGSELVFNNILKPFYNKHITLKTL 1136
Query: 232 KTHPVTELYEV 242
HP + E+
Sbjct: 1137 SHHPTKVILEL 1147
>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
gi|81653364|sp|Q7M840.1|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
Length = 238
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%), Gaps = 25/178 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+ LGYRF NKNLL EA T S ++ ++ ERLE++GD+VL+L++ + F +P G
Sbjct: 8 EKRLGYRFQNKNLLIEALTHKSY-KKPYNNERLEFLGDAVLDLVIGEFLFLKFPKADEGE 66
Query: 131 LTRLRSANVNTEKLARVA--IKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
L+++R++ VN + A++A + LG H ++ + + +N +
Sbjct: 67 LSKMRASLVNEKGFAKLAERVSLGRHIFISNAE-------------------ENNKGREK 107
Query: 189 PKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
P +L++ E+T+GA++++ S+ ++V ++ E+ P I +L T L E+ Q
Sbjct: 108 PSLLSNAFEATMGAIYLETGLSVVREVVHRLLDEVY-PKIDLGSLFRDYKTALQELTQ 164
>gi|256851300|ref|ZP_05556689.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
gi|260660724|ref|ZP_05861639.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
gi|297206169|ref|ZP_06923564.1| ribonuclease III [Lactobacillus jensenii JV-V16]
gi|256616362|gb|EEU21550.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
gi|260548446|gb|EEX24421.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
gi|297149295|gb|EFH29593.1| ribonuclease III [Lactobacillus jensenii JV-V16]
Length = 230
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 32/230 (13%)
Query: 75 GYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
G +F N+ LLEEAFT S E +YE+LE++GD+VL L ++ + +P+L G
Sbjct: 15 GIKFKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAVSDYLYRHFPSLNEG 74
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LTRLRS V TE + AI+ G P +E L G +
Sbjct: 75 QLTRLRSNIVRTEGFSGFAIECGF--------P---------AEINLGRGEEKTGARERK 117
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI-SPETLKTHPV-TELYEVCQKN- 246
+L D+ E+ GA+F+D +D V K K + P+I S E + T+L E+ Q N
Sbjct: 118 TLLEDVFEAFNGALFLD--QGMDAVQKFLKLTVYPLIDSGEFTDSRDYKTDLQELLQVNG 175
Query: 247 --KLKVKFVDLWKESTAFHI--FIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
K++ + ++ K + F + F+E + + G+ K+ A AAK AL
Sbjct: 176 AIKIEYQVLEETKLPSNFKVALFVEGKKISEGS-GHNKKAAEQVAAKLAL 224
>gi|399020225|ref|ZP_10722364.1| ribonuclease III [Herbaspirillum sp. CF444]
gi|398095877|gb|EJL86209.1| ribonuclease III [Herbaspirillum sp. CF444]
Length = 351
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 35/238 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG+ F + LL++A T S ERLE++GDS+LN ++ F Y + G L+R
Sbjct: 10 LGHTFKDATLLQQALTHRS--HSSLHNERLEFLGDSILNCVVASLLFDRYSKIDEGDLSR 67
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V + L +A +L L ++LR L E +++ +G P +LA
Sbjct: 68 LRANLVKQQSLYEIAQRLDLSQFLR----LGEGELK-------------SGGFRRPSILA 110
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVK 251
D +E+ GA+F+D N++ D++ ++ +L + P+TL T L E Q K+ +
Sbjct: 111 DTLEALFGAIFLDAGFNAARDVIRALYIPILD-TVDPKTLGKDAKTLLQEYLQGKKIPLP 169
Query: 252 FVDLWKESTAFH----------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
++ A H +E Q+ G G + AAK AL ++ L
Sbjct: 170 QYNVVATHGAAHNQEFEIECLVPKLEIQVFGTGG---SRRAGEQAAAKLALEAVQAAL 224
>gi|347758995|ref|YP_004866557.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591513|gb|AEP10555.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 232
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 45/245 (18%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
D ++ L +RF+N +LL A T S +YERLE++GD V+ L L + F ++P+
Sbjct: 13 DLQDRLNHRFSNPDLLRAALTHSSTGA-AVNYERLEFLGDRVMGLALARFLFDIFPHENE 71
Query: 129 GSLTRLRSANVNTEKLARVA--IKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G L R +A V+ LARVA I LG +L H + + G
Sbjct: 72 GDLARRHAALVSGSTLARVAKGINLGDALHLSHAE-------------------RAAGGA 112
Query: 187 DAPKVLADIVESTIGAVFID-----CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
+ +L+D+VE+ IGA+++D C S+I +W +LL+ ++P P T L E
Sbjct: 113 ENDNILSDVVEAMIGALYLDAGLDPCMSAIQSLW---GDLLQADLTP---PRDPKTALQE 166
Query: 242 VCQKNKLKVKFVDLWKESTAFH-------IFIE--DQLLGRGAYAPKKEIAHNRAAKDAL 292
Q + + + S H +F+E D++ +G + A AA L
Sbjct: 167 WAQGQGHPLPRYTMIERSGPDHAPIFTVSVFVEGFDEVAEQGT---SRRAAEKAAATRLL 223
Query: 293 NNIER 297
N IE+
Sbjct: 224 NIIEK 228
>gi|346225719|ref|ZP_08846861.1| ribonuclease III [Anaerophaga thermohalophila DSM 12881]
Length = 245
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 47/243 (19%)
Query: 73 ILGYRFNNKNLLEEAFTDPSCPERF----FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
I G R N +L +A S R F+ ERLEY+GD++L ++ +E + LYPN
Sbjct: 26 ITGIRPGNIDLYHQAVVHKSVIRRNRRKPFNNERLEYLGDAILGAVVAQELYLLYPNEDE 85
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT+ RS V+ L ++A+ +GL ++++ + P G +
Sbjct: 86 GFLTKTRSRIVSRANLNQIALDMGLQEWIQFHPP---------------------GDISQ 124
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE--------LY 240
+L D +E+ IGA+F+D + ++ ++ I + L + E L
Sbjct: 125 THILGDALEAIIGAIFLDKG------YGSSRKFIRNRILTKYLDLKQIVENDTNYKSILI 178
Query: 241 EVCQKNKLKVKFVD----LWKESTAFHI---FIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
E QKNK V F+ + +++ I + +++ G G KKE A +AA +AL
Sbjct: 179 EWGQKNKHPVHFITEEYPVTEDNGPVFIARAIVNEKISGMGTGNSKKE-AEQKAANEALE 237
Query: 294 NIE 296
N++
Sbjct: 238 NVQ 240
>gi|184159116|ref|YP_001847455.1| ribonuclease III [Acinetobacter baumannii ACICU]
gi|417559784|ref|ZP_12210663.1| ribonuclease III [Acinetobacter baumannii OIFC137]
gi|417565517|ref|ZP_12216391.1| ribonuclease III [Acinetobacter baumannii OIFC143]
gi|417569770|ref|ZP_12220628.1| ribonuclease III [Acinetobacter baumannii OIFC189]
gi|417575567|ref|ZP_12226415.1| ribonuclease III [Acinetobacter baumannii Naval-17]
gi|183210710|gb|ACC58108.1| dsRNA-specific ribonuclease [Acinetobacter baumannii ACICU]
gi|395522366|gb|EJG10455.1| ribonuclease III [Acinetobacter baumannii OIFC137]
gi|395553993|gb|EJG19999.1| ribonuclease III [Acinetobacter baumannii OIFC189]
gi|395557273|gb|EJG23274.1| ribonuclease III [Acinetobacter baumannii OIFC143]
gi|395571056|gb|EJG31715.1| ribonuclease III [Acinetobacter baumannii Naval-17]
Length = 234
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 28/233 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F LL+ A T S ++ +YERLE++GDS+L +++ + YP+ G LTR
Sbjct: 21 IGYQFKQPELLQLALTHRSVSHKY-NYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTR 79
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 80 MRATLVRQEALGKIATDLQLSRCL-----------------ILSTGELKSGGHHRESILA 122
Query: 194 DIVESTIGAVFIDC---NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA+++D N DIV K + L + + LK P + L E Q K +
Sbjct: 123 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKD-PKSRLQEYLQARKKPL 181
Query: 251 ---KFVDLWKESTAFHIFIE---DQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ VD+ ++ H +E D L + A AA + L +E+
Sbjct: 182 PVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ 234
>gi|424866003|ref|ZP_18289854.1| ribonuclease III [SAR86 cluster bacterium SAR86B]
gi|400758159|gb|EJP72369.1| ribonuclease III [SAR86 cluster bacterium SAR86B]
Length = 219
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 22/158 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
EEILGY+F+N LL+ A T S ++ + ERLE++GD+VLNL++++ +YP+ GS
Sbjct: 6 EEILGYKFSNIQLLDLALTHKSF-DKAKNNERLEFLGDAVLNLIISEHLSNIYPDETEGS 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLE-EQIREFSEAILDYPLHSNGLVDAP 189
LTR+RS V E L V + LG+ ++++ +K E ++ S
Sbjct: 65 LTRMRSLIVKGESLTSVFLNLGIKEFIKLSKGTSNIEHDKKLS----------------- 107
Query: 190 KVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPM 225
+ D +ES I A+++D + ++ D V +F LK +
Sbjct: 108 -IYEDCMESLIAAIYLDSDYKTTRDYVVNIFDTELKSI 144
>gi|427407296|ref|ZP_18897501.1| ribonuclease III [Selenomonas sp. F0473]
gi|425707386|gb|EKU70431.1| ribonuclease III [Selenomonas sp. F0473]
Length = 251
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 42/240 (17%)
Query: 74 LGYRFNNKNLLEEAFTDPSCP---ERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
LG RF + +LL+EA T S + + ERLEY+GD+VL L + + +P G
Sbjct: 33 LGIRFADISLLDEALTHSSYANESRKLIPHNERLEYLGDAVLELASSTYLYECFPACTEG 92
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT++R++ V +E LAR+A +L L YLR L + +G +
Sbjct: 93 ELTKMRASLVQSETLARLARRLDLGAYLR-----------------LGHGEAQDGGAERQ 135
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP-------VTELYEV 242
L + E+ +GAV++D W+ K+ ++ E + P T L E
Sbjct: 136 NNLENAFEAVVGAVYLDGG------WEAAKDYAYAQLASEVGRLRPEQVQRDYKTTLQEY 189
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
QK + + +L ES H + + + +G G KK+ A +AA AL+ +
Sbjct: 190 IQKTQRETVAYELVDESGPDHDKRFTTRVLVAGRAMGEGTGRSKKK-AEQQAAAHALDRL 248
>gi|169795096|ref|YP_001712889.1| ribonuclease III [Acinetobacter baumannii AYE]
gi|239501066|ref|ZP_04660376.1| ribonuclease III [Acinetobacter baumannii AB900]
gi|260556582|ref|ZP_05828800.1| ribonuclease III [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|301345824|ref|ZP_07226565.1| ribonuclease III [Acinetobacter baumannii AB056]
gi|301512403|ref|ZP_07237640.1| ribonuclease III [Acinetobacter baumannii AB058]
gi|301594764|ref|ZP_07239772.1| ribonuclease III [Acinetobacter baumannii AB059]
gi|332851055|ref|ZP_08433164.1| ribonuclease III [Acinetobacter baumannii 6013150]
gi|332869696|ref|ZP_08438884.1| ribonuclease III [Acinetobacter baumannii 6013113]
gi|332875945|ref|ZP_08443731.1| ribonuclease III [Acinetobacter baumannii 6014059]
gi|384144225|ref|YP_005526935.1| dsRNA-specific ribonuclease [Acinetobacter baumannii MDR-ZJ06]
gi|387122954|ref|YP_006288836.1| ribonuclease III [Acinetobacter baumannii MDR-TJ]
gi|403675441|ref|ZP_10937606.1| ribonuclease III [Acinetobacter sp. NCTC 10304]
gi|407933705|ref|YP_006849348.1| ribonuclease III [Acinetobacter baumannii TYTH-1]
gi|417870356|ref|ZP_12515322.1| ribonuclease III [Acinetobacter baumannii ABNIH1]
gi|417874396|ref|ZP_12519249.1| ribonuclease III [Acinetobacter baumannii ABNIH2]
gi|417877597|ref|ZP_12522288.1| ribonuclease III [Acinetobacter baumannii ABNIH3]
gi|417881773|ref|ZP_12526083.1| ribonuclease III [Acinetobacter baumannii ABNIH4]
gi|421203557|ref|ZP_15660694.1| ribonuclease III [Acinetobacter baumannii AC12]
gi|421533521|ref|ZP_15979804.1| ribonuclease III [Acinetobacter baumannii AC30]
gi|421704387|ref|ZP_16143832.1| ribonuclease III [Acinetobacter baumannii ZWS1122]
gi|421708165|ref|ZP_16147544.1| ribonuclease III [Acinetobacter baumannii ZWS1219]
gi|424051451|ref|ZP_17788983.1| ribonuclease 3 [Acinetobacter baumannii Ab11111]
gi|424059032|ref|ZP_17796523.1| ribonuclease 3 [Acinetobacter baumannii Ab33333]
gi|424062490|ref|ZP_17799976.1| ribonuclease 3 [Acinetobacter baumannii Ab44444]
gi|238685526|sp|A3M7P2.2|RNC_ACIBT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238688097|sp|B0VCU0.1|RNC_ACIBY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|384955634|sp|B7GYT0.2|RNC_ACIB3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|169148023|emb|CAM85886.1| ribonuclease III, ds RNA [Acinetobacter baumannii AYE]
gi|193078016|gb|ABO12936.2| ribonuclease III [Acinetobacter baumannii ATCC 17978]
gi|260409841|gb|EEX03141.1| ribonuclease III [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|332730219|gb|EGJ61544.1| ribonuclease III [Acinetobacter baumannii 6013150]
gi|332732598|gb|EGJ63831.1| ribonuclease III [Acinetobacter baumannii 6013113]
gi|332735811|gb|EGJ66852.1| ribonuclease III [Acinetobacter baumannii 6014059]
gi|342228043|gb|EGT92948.1| ribonuclease III [Acinetobacter baumannii ABNIH1]
gi|342229118|gb|EGT93988.1| ribonuclease III [Acinetobacter baumannii ABNIH2]
gi|342235314|gb|EGT99921.1| ribonuclease III [Acinetobacter baumannii ABNIH3]
gi|342238528|gb|EGU02959.1| ribonuclease III [Acinetobacter baumannii ABNIH4]
gi|347594718|gb|AEP07439.1| dsRNA-specific ribonuclease [Acinetobacter baumannii MDR-ZJ06]
gi|385877446|gb|AFI94541.1| ribonuclease III [Acinetobacter baumannii MDR-TJ]
gi|398326931|gb|EJN43072.1| ribonuclease III [Acinetobacter baumannii AC12]
gi|404665007|gb|EKB32970.1| ribonuclease 3 [Acinetobacter baumannii Ab11111]
gi|404669770|gb|EKB37662.1| ribonuclease 3 [Acinetobacter baumannii Ab33333]
gi|404671442|gb|EKB39285.1| ribonuclease 3 [Acinetobacter baumannii Ab44444]
gi|407190221|gb|EKE61440.1| ribonuclease III [Acinetobacter baumannii ZWS1122]
gi|407190778|gb|EKE61993.1| ribonuclease III [Acinetobacter baumannii ZWS1219]
gi|407902286|gb|AFU39117.1| ribonuclease III [Acinetobacter baumannii TYTH-1]
gi|409988521|gb|EKO44691.1| ribonuclease III [Acinetobacter baumannii AC30]
gi|452947998|gb|EME53479.1| ribonuclease III [Acinetobacter baumannii MSP4-16]
Length = 230
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 28/233 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F LL+ A T S ++ +YERLE++GDS+L +++ + YP+ G LTR
Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKY-NYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTR 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 76 MRATLVRQEALGKIATDLQLSRCL-----------------ILSTGELKSGGHHRESILA 118
Query: 194 DIVESTIGAVFIDC---NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA+++D N DIV K + L + + LK P + L E Q K +
Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKD-PKSRLQEYLQARKKPL 177
Query: 251 ---KFVDLWKESTAFHIFIE---DQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ VD+ ++ H +E D L + A AA + L +E+
Sbjct: 178 PVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ 230
>gi|374367226|ref|ZP_09625293.1| ribonuclease III [Cupriavidus basilensis OR16]
gi|373101234|gb|EHP42288.1| ribonuclease III [Cupriavidus basilensis OR16]
Length = 256
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 25/201 (12%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
NLD ++ LGYRF+ LL++A T S ERLE++GDSVLN + + ++
Sbjct: 2 NLDALQQRLGYRFSKPELLQQALTHRS--HSALHNERLEFLGDSVLNCAVADMLYGMFSK 59
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
L G L+R+R+ V + L +A L L + LR L E +++ +G
Sbjct: 60 LDEGDLSRVRANLVKQQALYEIAQMLQLSEALR----LGEGELK-------------SGG 102
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEV 242
P +LAD +E+ +GAVF+D + D + ++L P+ + P TL T L E
Sbjct: 103 FRRPSILADALEAIVGAVFLD--AGFDGARTLIRKLYIPILEQVDPRTLGKDAKTLLQEY 160
Query: 243 CQKNKLKVKFVDLWKESTAFH 263
Q +K+ + ++ A H
Sbjct: 161 LQGHKIALPQYNVIATHGAAH 181
>gi|113868517|ref|YP_727006.1| ribonuclease III [Ralstonia eutropha H16]
gi|339326546|ref|YP_004686239.1| ribonuclease Rnc [Cupriavidus necator N-1]
gi|123133802|sp|Q0K8N3.1|RNC_RALEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|113527293|emb|CAJ93638.1| dsRNA-specific ribonuclease [Ralstonia eutropha H16]
gi|338166703|gb|AEI77758.1| ribonuclease Rnc [Cupriavidus necator N-1]
Length = 256
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 25/201 (12%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
NLD ++ LGYRF+ LL++A T S + ERLE++GDSVLN + + ++
Sbjct: 2 NLDALQQRLGYRFSKPELLQQALTHRSHSAQH--NERLEFLGDSVLNCAVADMLYGMFGK 59
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
L G L+R+R+ V + L +A L L LR L E +++ +G
Sbjct: 60 LDEGDLSRVRANLVKQQALYEIAQMLQLSDTLR----LGEGELK-------------SGG 102
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEV 242
P +LAD +E+ +GAVF+D + D + ++L P+ + P TL T L E
Sbjct: 103 FRRPSILADALEAIVGAVFLD--AGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEY 160
Query: 243 CQKNKLKVKFVDLWKESTAFH 263
Q +K+ + ++ A H
Sbjct: 161 LQGHKIALPQYNVIATHGAAH 181
>gi|383759948|ref|YP_005438934.1| ribonuclease III [Rubrivivax gelatinosus IL144]
gi|381380618|dbj|BAL97435.1| ribonuclease III [Rubrivivax gelatinosus IL144]
Length = 234
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 87/182 (47%), Gaps = 22/182 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LG+RF LL A T S ERLE++GDSVLN ++ + + G
Sbjct: 9 QQRLGHRFERTGLLTRALTHRSWGADH--NERLEFLGDSVLNCAVSALLYERFSGSDEGD 66
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LTR+R+ V + L RVA+ LGL + LR + E ++R G P
Sbjct: 67 LTRVRAHLVREDSLHRVALTLGLPEVLR----MSEGEMR-------------GGGAQRPS 109
Query: 191 VLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
+LAD VE+ IGA+F+D ++ V ++F E++ + TEL E Q +L
Sbjct: 110 ILADAVEALIGAIFLDGGYEPALAAVRRLFGEVI-AATEADAWTKDAKTELQEWLQARRL 168
Query: 249 KV 250
V
Sbjct: 169 PV 170
>gi|336373452|gb|EGO01790.1| hypothetical protein SERLA73DRAFT_85682 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1354
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 19/191 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE-RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E I+G++F +LL +A T S + YERLE++GD++L ++ + F + PG
Sbjct: 1052 ETIIGHKFAYPHLLAQALTHASVQGYQSTCYERLEFIGDAILEFMVIRHIFNRDDKMSPG 1111
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL-----DYPLHSNG 184
LT ++ A V+ LA V + GLH+++ + L I+ + + + +Y L +
Sbjct: 1112 VLTLMKGAMVSNSALAAVCVWSGLHEHILYESFPLAGNIQGYIDELKKKQTEEYELAARE 1171
Query: 185 L---------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM----ISPETL 231
V+ PK L+D+VES IGA++I VF +LKP I+ +TL
Sbjct: 1172 QRTPGQFWLDVEPPKALSDVVESIIGAIYISDGFQPIGSELVFNNILKPFYNKHITLKTL 1231
Query: 232 KTHPVTELYEV 242
HP + E+
Sbjct: 1232 SHHPTKVILEL 1242
>gi|269792704|ref|YP_003317608.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100339|gb|ACZ19326.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 226
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 37/221 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
++ +GYRF + LL EA T S + + ERLE++GDSVL L + +E + +P+
Sbjct: 15 QDRVGYRFADTQLLIEALTHSSFANQAQLGYCNERLEFLGDSVLGLCVAEELYRRHPSER 74
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT+L+S V++ LAR LGL + LR K AI P S G+V
Sbjct: 75 EGRLTKLKSTGVSSHNLARSGRVLGLDRVLRVGK------------AIKGGP--SEGMV- 119
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PVTELYEVCQKN 246
AD +E+ IGAV++D + + ++ +S ++L + P + L E+ Q+
Sbjct: 120 -----ADAMEALIGAVYLDGG------LEAARGIVSRHVSLDSLSSQDPKSALQEMAQRL 168
Query: 247 KLKV---KFVDLW----KESTAFHIFIEDQLLGRGAYAPKK 280
+ + + V++ + + ++++ +L+G G ++
Sbjct: 169 GIPLPSYRLVEVRGPEHRATFVVQVWLKGELMGVGNGGSRR 209
>gi|336380656|gb|EGO21809.1| hypothetical protein SERLADRAFT_441040 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1460
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
D +E L Y F+ +LL EA T PS SY+RLE++GD+V++L++ + +P
Sbjct: 1138 DLQESLCYEFHRGDLLVEAATHPSFATSASSSYQRLEFLGDAVIDLVVLNYLYRRFPQAN 1197
Query: 128 PGSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREF-----SEAILDYPLH 181
G L+ RS V LA +++ +L LHK L N L I S ++ D ++
Sbjct: 1198 SGQLSAARSRAVCGPTLASISVRRLCLHKILLVNNVELSSAINRHVPILESTSVEDI-IN 1256
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---MISPETLKTHPVTE 238
D PK L+D++ES +GA+F+D + + V V + ++ ++SP L PV+E
Sbjct: 1257 KGWKYDPPKALSDVLESVVGAIFVDSAYNFEKVASVVELIMSDVLELLSP-NLPKDPVSE 1315
Query: 239 L 239
L
Sbjct: 1316 L 1316
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG ++LL EA T P+ F+ +RLE +GDSVL L T YP+ G L+
Sbjct: 962 LGLPMIAEDLLIEASTLPTT-SLTFNNQRLETLGDSVLKLGSTVHIMNKYPHRHEGQLSH 1020
Query: 134 LRSANVNTEKLARVAIKLGLHKYL---RHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LR +V+ L A ++ L ++L HN + E +++ L S +
Sbjct: 1021 LRQNSVSNRTLLSRAKEIELERFLNSESHNLHFWRYTVPEDTDSTLCRIRRSTRREFPRR 1080
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKEL 221
L D +E+T+GA F+ ID+ + L
Sbjct: 1081 SLQDCMEATLGAAFV--TGGIDMALQAGTAL 1109
>gi|237807623|ref|YP_002892063.1| ribonuclease III [Tolumonas auensis DSM 9187]
gi|237499884|gb|ACQ92477.1| ribonuclease III [Tolumonas auensis DSM 9187]
Length = 223
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 26/181 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+ LGY F NK+LL A T S R ERLE++GDS+L+L++ + + +PN+ G
Sbjct: 9 EQKLGYPFQNKDLLVRAITHRSAGSRH--NERLEFLGDSILSLVIAEVLYHRFPNVSEGD 66
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
++R+R+ V + LA +A + L YL IL +G
Sbjct: 67 MSRMRATLVREKTLAELAREFALGDYL-----------------ILGPGELKSGGYRRES 109
Query: 191 VLADIVESTIGAVFIDCN----SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
+LAD VE+ IGA+++D + ++ + W + E L I P + P T L E Q
Sbjct: 110 ILADTVEALIGAIYLDSDLDGIRTLMLNW--YNERLDS-IRPGVEQKDPKTRLQEFLQGR 166
Query: 247 K 247
+
Sbjct: 167 R 167
>gi|451823164|ref|YP_007459438.1| ribonuclease III [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451775964|gb|AGF47005.1| ribonuclease III [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 230
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 21/147 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L Y FNN +LLE A T S ERLE++GDS+LN +T F + ++ G
Sbjct: 7 ENSLKYSFNNISLLELALTHRSYSAN--HNERLEFLGDSILNSSITIILFERFSHIDEGG 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR++ V LA++AIKL + +YLR L + +I+ +G + P
Sbjct: 65 LSRLRASLVQQNSLAKIAIKLDISRYLR----LGDGEIK-------------SGGSNRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKV 217
+LAD +E+ GA+F D S D+ +
Sbjct: 108 ILADCIEAIFGAIFQD--SGFDVCKNI 132
>gi|94311354|ref|YP_584564.1| ribonuclease III [Cupriavidus metallidurans CH34]
gi|430806722|ref|ZP_19433837.1| ribonuclease III [Cupriavidus sp. HMR-1]
gi|189043335|sp|Q1LKN1.1|RNC_RALME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|93355206|gb|ABF09295.1| RNase III [Cupriavidus metallidurans CH34]
gi|429500989|gb|EKZ99339.1| ribonuclease III [Cupriavidus sp. HMR-1]
Length = 256
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LGYRF+ LL++A T S + ERLE++GDSVLN + F ++ L G
Sbjct: 7 QQRLGYRFSKPELLQQALTHRSHSAQH--NERLEFLGDSVLNCAVADMLFGMFGKLDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+R+R+ V + L +A L L LR L E +++ +G P
Sbjct: 65 LSRVRANLVKQQALYEIAQMLQLSDALR----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNK 247
+LAD +E+ +GAVF+D + D + ++L P+ + P TL T L E Q +K
Sbjct: 108 ILADALEAIVGAVFLD--AGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHK 165
Query: 248 LKVKFVDLWKESTAFH 263
+ + ++ A H
Sbjct: 166 IALPQYNVIATHGAAH 181
>gi|406864416|gb|EKD17461.1| putative Dicer-like protein 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1827
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
Y F L AFT PS P E SY+RLE++GDS+L++ + +P+ P LT
Sbjct: 1536 YHFKYPRLARSAFTHPSYPYSYEHVPSYQRLEFLGDSLLDMACINFLYHAFPDKDPQWLT 1595
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDY-------------- 178
+ A V+ + L + + LG H++L ++QI ++ I +
Sbjct: 1596 EHKMAMVSNQFLGALCVSLGFHRHLLLFNAGFQKQISDYVTDITEARTQAEADAVRAGKS 1655
Query: 179 -----PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK----PMISPE 229
P + + PK L D+VE+ IGA+F+D + ++ F +K M +
Sbjct: 1656 PQDCNPDYWTSVRQPPKCLPDVVEAYIGAIFVDSEYNYAVIEDFFDRHIKWYFLDMSVYD 1715
Query: 230 TLKT-HPVTELYEVCQKN---------KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPK 279
T HP T L + Q N ++K VD K + + + +++ A A
Sbjct: 1716 TFANKHPTTFLTKFLQINMGCADWSIMTREIKHVDGSKPTVVAMVIVHGKVVA-DAKAES 1774
Query: 280 KEIAHNRAAKDALN 293
+ AAK A+N
Sbjct: 1775 SRYSKVNAAKKAMN 1788
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+YERLE++GD L + + F ++P S R + + L A+KL L++Y+R
Sbjct: 1366 NYERLEFLGDCFLKMATSISLFGIHPENDEYSYHVDRMMLICNKNLKNNAVKLKLYQYIR 1425
Query: 159 HNKPLLEEQIREFSEAILDYPLHSNGLV-------DAP-------KVLADIVESTIGAVF 204
S+A + GLV AP K +AD+ E+ IGA
Sbjct: 1426 -------------SQAFSRRAWYPEGLVLKQGKTAAAPTTHKLGDKSIADVCEALIGAAL 1472
Query: 205 IDCNSSIDI 213
+ + S D+
Sbjct: 1473 LTYHESKDM 1481
>gi|336367926|gb|EGN96270.1| hypothetical protein SERLA73DRAFT_112480 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1460
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
D +E L Y F+ +LL EA T PS SY+RLE++GD+V++L++ + +P
Sbjct: 1138 DLQESLCYEFHRGDLLVEAATHPSFATSASSSYQRLEFLGDAVIDLVVLNYLYRRFPQAN 1197
Query: 128 PGSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREF-----SEAILDYPLH 181
G L+ RS V LA +++ +L LHK L N L I S ++ D ++
Sbjct: 1198 SGQLSAARSRAVCGPTLASISVRRLCLHKILLVNNVELSSAINRHVPILESTSVEDI-IN 1256
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---MISPETLKTHPVTE 238
D PK L+D++ES +GA+F+D + + V V + ++ ++SP L PV+E
Sbjct: 1257 KGWKYDPPKALSDVLESVVGAIFVDSAYNFEKVASVVELIMSDVLELLSP-NLPKDPVSE 1315
Query: 239 L 239
L
Sbjct: 1316 L 1316
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG ++LL EA T P+ F+ +RLE +GDSVL L T YP+ G L+
Sbjct: 962 LGLPMIAEDLLIEASTLPTT-SLTFNNQRLETLGDSVLKLGSTVHIMNKYPHRHEGQLSH 1020
Query: 134 LRSANVNTEKLARVAIKLGLHKYL---RHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LR +V+ L A ++ L ++L HN + E +++ L S +
Sbjct: 1021 LRQNSVSNRTLLSRAKEIELERFLNSESHNLHFWRYTVPEDTDSTLCRIRRSTRREFPRR 1080
Query: 191 VLADIVESTIGAVFIDCNSSIDI 213
L D +E+T+GA F+ ID+
Sbjct: 1081 SLQDCMEATLGAAFV--TGGIDM 1101
>gi|421748648|ref|ZP_16186217.1| ribonuclease III [Cupriavidus necator HPC(L)]
gi|409772607|gb|EKN54579.1| ribonuclease III [Cupriavidus necator HPC(L)]
Length = 256
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 23/200 (11%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
NLD ++ LGYRF+ LL++A T S + ERLE++GDSVLN + + ++
Sbjct: 2 NLDALQQRLGYRFSKPELLQQALTHRSHSAQH--NERLEFLGDSVLNCAVADMLYGMFGK 59
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
L G L+R+R+ V + L +A L L + LR L E +++ +G
Sbjct: 60 LDEGDLSRVRANLVKQQALYEIAQMLQLSESLR----LGEGELK-------------SGG 102
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
P +LAD +E+ +GAVF+D ++ ++ K++ +L+ + P TL T L E
Sbjct: 103 FRRPSILADALEAIVGAVFLDAGFEAARSLIRKLYIPILE-QVDPRTLGKDAKTLLQEYL 161
Query: 244 QKNKLKVKFVDLWKESTAFH 263
Q +K+ + ++ A H
Sbjct: 162 QGHKIALPQYNVIATHGAAH 181
>gi|406979999|gb|EKE01673.1| RNase III, dsRNA [uncultured bacterium]
Length = 223
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 34/237 (14%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
EILGY F N LLE A S + S ERLE++GD+ LN ++ E F YP++ G L
Sbjct: 8 EILGYSFQNMKLLERALRHRSMGK--VSNERLEFLGDAALNFIIAAELFHRYPDMKEGDL 65
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
+RLR+ VN + LA +A +L + +L+ L +G +
Sbjct: 66 SRLRANLVNGDVLADLAGELHIGDHLQFGSGELR-----------------SGGAKRKSI 108
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI-SPETLKTHPVTELYEVCQKNKLKV 250
+AD E+ IGA+++D + + +V K + + + P T L E+ Q K+ +
Sbjct: 109 IADATEAIIGAMYLDGGFEV-VQRRVLSWFSKRLDEAAGVAQKDPKTLLQELLQMRKIPL 167
Query: 251 KFVDLWKESTAFH--IF--------IEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ + H +F +++ +G G P K A AA+ L IE+
Sbjct: 168 PAYTVVSTTGVSHSQVFTIKCAVSGVDEAAIGIG---PNKRRAERDAAEKMLARIEK 221
>gi|260220751|emb|CBA28629.1| Ribonuclease 3 [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 224
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 30/199 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS---YERLEYVGDSVLNLLLTKEQFFLYPNLP 127
++ L ++F+N +LL A T R FS YERLE++GDSVL L ++ + NLP
Sbjct: 5 QQRLQHQFSNVSLLSRALT-----HRSFSADHYERLEFLGDSVLGLAISDLLYSRLGNLP 59
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G L+R+R+ V E L ++A+KLGL L+ L E ++R +G
Sbjct: 60 EGDLSRVRANLVRQETLHQLALKLGLPDVLK----LGEGEMR-------------SGGPK 102
Query: 188 APKVLADIVESTIGAVFIDCN--SSIDIVWKVFKEL-LKPMISPETLKTHPVTELYEVCQ 244
+LAD +E+ IGAV++D + +V ++F+ + + P + + + TEL E Q
Sbjct: 103 RASILADALEAIIGAVYLDAGFAKAQALVHRLFEAVEINPQM--QAIGKDAKTELQEWLQ 160
Query: 245 KNKLKVKFVDLWKESTAFH 263
K+K+ + A H
Sbjct: 161 GRKMKLPLYTVVGTIGAAH 179
>gi|119713601|gb|ABL97652.1| ribonuclease III [uncultured marine bacterium EB0_39H12]
Length = 218
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 26/174 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
L Y F ++ L + A T S + ERLE++GD++LNL +++ F Y NL G LTR
Sbjct: 9 LEYSFQDEELFQLALTHKSLSSH--NNERLEFLGDAILNLYVSERLFNTYGNLKEGKLTR 66
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+++ V+ E L RVAI L L +++ K L N +L
Sbjct: 67 FKASIVSRENLHRVAINLELSNHIKLGKG---------------ESLQGNS------ILG 105
Query: 194 DIVESTIGAVFIDCNSS--IDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+++E+ IGA+F+D + S +++ +FK+ ++ E LK P + L E+ QK
Sbjct: 106 NVLEALIGAIFLDSDYSETKNVLDNIFKDDFLKLVEEEELK-DPKSTLQELIQK 158
>gi|444841769|gb|AGE12617.1| Dicer 2 [Nilaparvata lugens]
Length = 1448
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-PERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+++ Y+F N+ L +A + P+ P +Y+RLE++GD++L+ L+T + NL P
Sbjct: 1268 EKLINYKFKNRAFLLQALSHPTYQPNNITPTYQRLEFLGDAILDFLVTTHMYEYCDNLTP 1327
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE 173
G LT LRSA VN LA +A+++GLHK+L L + I F E
Sbjct: 1328 GELTDLRSALVNNVTLASIAVRIGLHKFLLLRSCQLSKVIEAFVE 1372
>gi|383502172|ref|YP_005415531.1| ribonuclease III [Rickettsia australis str. Cutlack]
gi|378933183|gb|AFC71688.1| ribonuclease III [Rickettsia australis str. Cutlack]
Length = 227
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E++LGY F N+ LL EA + PS + YERLE++GD+VLNL++T+ F + N
Sbjct: 8 EKLLGYSFKNQELLIEALSHPSLRQHHEYKYDKDYERLEFLGDAVLNLVVTEILFRNFAN 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G+L ++RS V E + V KL L Y+ I+ + G
Sbjct: 68 YNEGNLAKVRSYLVCKETICVVGTKLTLKDYI-----------------IMTHGEEVAGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PVTELYEVCQ 244
D P + + E+ I A+++D N I+I + +L I + L + P T L E Q
Sbjct: 111 RDNPNNIENATEALIAAIYLDSN--IEITRNIIGKLWTKFIKIQNLTDYDPKTALQEWAQ 168
Query: 245 KNKLKVKFVDLWKESTAFH 263
++ + L A H
Sbjct: 169 ASRHHLPIYRLINREGAAH 187
>gi|157825292|ref|YP_001493012.1| ribonuclease III [Rickettsia akari str. Hartford]
gi|189043339|sp|A8GM79.1|RNC_RICAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157799250|gb|ABV74504.1| ribonuclease III [Rickettsia akari str. Hartford]
Length = 227
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 25/199 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E++LGY F N+ LL EA + PS + YERLE++GD+VLNL++T+ F + +
Sbjct: 8 EKLLGYSFKNQELLIEALSHPSLRQHHEYKYDKDYERLEFLGDAVLNLVVTEILFRNFAS 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G+L ++RS V E + V KL L Y+ I+ Y G
Sbjct: 68 YNEGNLAKIRSYLVCKETICVVGTKLTLKDYI-----------------IMTYGEEVAGG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTH-PVTELYEVCQ 244
D P + + +E+ I A+++D N I+ + +L + I + L + P T L E Q
Sbjct: 111 RDNPNNIENAMEALIAAIYLDSN--IETTRNIIGKLWEEFIKIQNLTDYDPKTALQEWAQ 168
Query: 245 KNKLKVKFVDLWKESTAFH 263
+ + L K A H
Sbjct: 169 ASSHHLPIYRLIKREGAAH 187
>gi|392529137|ref|ZP_10276274.1| ribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
gi|414083593|ref|YP_006992301.1| ribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412997177|emb|CCO10986.1| ribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 231
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 74 LGYRFNNKNLLEEAFTDPS-------CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
G F N + LEEAFT S C + ER+E++GD+VL L +++ F YP+L
Sbjct: 13 FGITFRNLSYLEEAFTHSSYVNEHRDCHIQ--DNERIEFLGDAVLELTVSRYLFDHYPDL 70
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P G LTRLR+ V L++ A + G Y+R + EE++ NG
Sbjct: 71 PEGKLTRLRATIVCEASLSQFAKEYGFDTYIRLGRG--EERM--------------NGR- 113
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEVC 243
+ P +L D+ ES IGA+++D I+ V ++ + P I+ +H + T L E
Sbjct: 114 NRPALLCDLFESFIGALYLD--QGIEAVLDFLRQTIFPKIATGAF-SHVMDHKTNLQEWL 170
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
Q+N V +L E H + E ++LG+G KK
Sbjct: 171 QQNGEIVIEYNLLDEVGPAHEKEFIVEVSAEGKVLGKGQGKTKK 214
>gi|332141899|ref|YP_004427637.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
gi|410862303|ref|YP_006977537.1| ribonuclease III [Alteromonas macleodii AltDE1]
gi|327551921|gb|AEA98639.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
gi|410819565|gb|AFV86182.1| ribonuclease III [Alteromonas macleodii AltDE1]
Length = 228
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 24/177 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY FNN+ LLE+A T S ++ ERLE++GD++L +++ + F +P +P G LTR
Sbjct: 14 IGYTFNNEALLEQALTHRSAAKQH--NERLEFLGDAILGMIIGETLFKRFPTVPEGKLTR 71
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V + LA +A + + + L L+ +G +LA
Sbjct: 72 MRSTLVKGDTLAELAKEASVGELLNLGPGELK-----------------SGGHRRSSILA 114
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP---VTELYEVCQKNK 247
D VE+ +GA+++D S +D V V L + I+ HP T L E Q K
Sbjct: 115 DAVEAILGAIYLD--SGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRK 169
>gi|389721526|ref|ZP_10188278.1| ribonuclease III [Acinetobacter sp. HA]
gi|388608822|gb|EIM38018.1| ribonuclease III [Acinetobacter sp. HA]
Length = 232
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F +LL+ A T S + +YERLE++GDS+L +++ F YP+ G LTR
Sbjct: 17 IGYQFKQADLLKLALTHRSVSHKH-NYERLEFLGDSLLGMIIANYLFTAYPHENEGRLTR 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 76 MRATLVRQEALGKIANDLKLSQNL-----------------ILSTGELKSGGHHRESILA 118
Query: 194 DIVESTIGAVFIDCNSSI---DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA+++DC IV K ++ L + + LK P + L E Q K +
Sbjct: 119 DTVEAIIGAIYVDCGDLTVLEPIVLKWYEPYLDHIEPTDQLKD-PKSRLQEYLQARKKPL 177
Query: 251 ---KFVDLWKESTAFHIFIEDQ------LLGRGA 275
+ VD+ ++ H +E + L+G G+
Sbjct: 178 PVYEVVDIQGDAPNQHFKVECRIEDLPILIGEGS 211
>gi|383936592|ref|ZP_09990016.1| ribonuclease III [Rheinheimera nanhaiensis E407-8]
gi|383702374|dbj|GAB60107.1| ribonuclease III [Rheinheimera nanhaiensis E407-8]
Length = 224
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 25/147 (17%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+F++ +LLE+A T SC + ERLE++GD+VL+L++ + + +P G LTR
Sbjct: 12 LGYQFSDTSLLEQALTHRSCKGQH--NERLEFLGDAVLSLVIAETLYSHFPKAREGDLTR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V LA +A +L L +YLR L+ +G +LA
Sbjct: 70 MRATLVKGVTLAEIAQELRLSEYLRLGPGELK-----------------SGGFRRESILA 112
Query: 194 DIVESTIGAVFID-----CNSSIDIVW 215
D VE+ +GA+++D C + I ++W
Sbjct: 113 DAVEAILGAIYLDSGMAACKARI-LLW 138
>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
Length = 249
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 41/252 (16%)
Query: 66 NNLDEE-------EILGYRFNNKNLLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTK 117
+N+D+E E+ GYRF + +LL E+ T PS E +YERLE++GD+VL++ +++
Sbjct: 6 DNIDKENLACRVYEVTGYRFRDLDLLLESLTHPSLSRESAANYERLEFLGDAVLSMAVSE 65
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD 177
+ L+P+ G LT+ R+A V ++ +A +GL + ++
Sbjct: 66 MLYRLFPDDDEGCLTQKRTALVRGSEVVEIARSIGLGGLI-----------------LMS 108
Query: 178 YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSS-----IDIVWKVFKELLKPMISPETLK 232
S G D P L + +E+ IGA++ID +S I W F + +P
Sbjct: 109 SGEMSCGGSDNPGTLENALEALIGAMYIDGSSEDYKNFIREHW--FSRAQRMSSAP---P 163
Query: 233 THPVTELYEVCQKNKLKVKFVDLWKESTAFH--IF-IEDQLLGRG---AYAPKKEIAHNR 286
P T L E Q V L +S H +F +E + G G K++A
Sbjct: 164 QDPKTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVEVSIQGHGSILGTGSSKKLAEQE 223
Query: 287 AAKDALNNIERL 298
AAK L I L
Sbjct: 224 AAKLMLKRITEL 235
>gi|90021888|ref|YP_527715.1| RNAse III [Saccharophagus degradans 2-40]
gi|89951488|gb|ABD81503.1| RNAse III [Saccharophagus degradans 2-40]
Length = 226
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 19/138 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F +K+LL+ A + S ++ + ER+E++GDS+LN ++ + F +P G LT+
Sbjct: 11 LGYTFKDKSLLKLALSHRSYGKQ--NNERVEFLGDSLLNFIIAEALFAKFPTAKEGQLTQ 68
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V E LA +A + GL +L LL E L S G A +LA
Sbjct: 69 LRANLVKGETLAEIAREFGLGDFL-----LLGEG-----------ELKSGGFRRAS-ILA 111
Query: 194 DIVESTIGAVFIDCNSSI 211
D VE+ IGA+++D NSS+
Sbjct: 112 DAVEALIGAIYLDSNSSM 129
>gi|238854774|ref|ZP_04645104.1| ribonuclease III [Lactobacillus jensenii 269-3]
gi|260664006|ref|ZP_05864859.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
gi|238832564|gb|EEQ24871.1| ribonuclease III [Lactobacillus jensenii 269-3]
gi|260561892|gb|EEX27861.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
Length = 230
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 32/230 (13%)
Query: 75 GYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
G +F N+ LLEEAFT S E +YE+LE++GD+VL L ++ + +P+L G
Sbjct: 15 GIKFKNETLLEEAFTHSSYVNEHPKESVGNYEKLEFLGDAVLELAVSDYLYRHFPSLNEG 74
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LTRLRS V TE + AI+ G P +E L + G +
Sbjct: 75 QLTRLRSNIVRTEGFSGFAIECGF--------P---------AEINLGHGEEKTGARERK 117
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI-SPETLKTHPV-TELYEVCQKN- 246
+L D+ E+ GA+F+D +D V K K + P+I S E + T+L E+ Q N
Sbjct: 118 TLLEDVFEAFNGALFLD--QGMDAVQKFLKLTVYPLIDSGEFTDSRDYKTDLQELLQVNG 175
Query: 247 --KLKVKFVDLWKESTAFHI--FIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
K++ + ++ K + F + +E + + G+ K+ A AAK AL
Sbjct: 176 AIKIEYQVLEESKLPSNFKVALLVEGKKISEGS-GHNKKAAEQVAAKLAL 224
>gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina
98AG31]
Length = 1540
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 33/250 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
+GY F LL +A T S + F + YER E++GD++++L +T+ + + + L
Sbjct: 1114 IGYEFKQPLLLMQALTHRSA-DSFLTNCYEREEWLGDAIVDLWITEHCYRRFSDSTAAQL 1172
Query: 132 TRLRSANVNTEKLARVAIK-LGLHKYLRHNKPLLEE-------QIREFSEAILDYPLHSN 183
T R++ V L +++K LGLHK ++H+ E+ I F E Y +N
Sbjct: 1173 TFTRASLVTNASLGYLSLKKLGLHKMIQHDSRHFEKACDDALRDIESFIEVGSFYDNLTN 1232
Query: 184 GLV--DAPKVLADIVESTIGAVFIDCNSSIDIVW----KVFKELLKPMISPE-------- 229
+ D PK+L D +E+ +GA+FIDC + + + K+F+++L + E
Sbjct: 1233 SFIVFDPPKILGDALEAIVGAIFIDCGLHLSVAYRSLDKIFEDVLPRLKQDEPRDPISLL 1292
Query: 230 --TLKTHPVTELYEVCQ---KNKLKVKFVDLWKESTAFH---IFIEDQLLGRGAYAPKKE 281
T T+ +EL V + + K D E +F + + +++ G +
Sbjct: 1293 LRTRDTYCCSELGRVTEHVVEKKETSGIRDNEDECESFRLCKVSLHGKVIATGRHRTSNT 1352
Query: 282 IAHNRAAKDA 291
+A RA+ +A
Sbjct: 1353 VAEQRASLNA 1362
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y+ LE VGD+ L L + + + G ++ LRS +V+ E L +++ GL Y+
Sbjct: 952 WDYQTLETVGDAFLKLATSVHVYLSHTKKGEGDMSALRSKSVDNEYLRSKSLQAGLGSYV 1011
Query: 158 RHNKPLLEEQIREFSEAIL-DYPLHSNGLVDAP---KVLADIVE 197
++ + F A L D PL G V +VL+DIVE
Sbjct: 1012 LSSR----YRTDTFRAAHLDDGPLLPTGEVQRKIPRRVLSDIVE 1051
>gi|189043297|sp|A8Z6F6.1|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826]
Length = 223
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 28/240 (11%)
Query: 67 NLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
NL+E E LGY+F LLEEA T S + + ERLE++GD+V++LL+ + F +
Sbjct: 3 NLEEFERNLGYKFKKSELLEEALTHKSTKQAL-NNERLEFLGDAVMDLLVAEYLFKKFSK 61
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +++LR+A VN + A +A +L + ++LR L +NG
Sbjct: 62 IAEGDMSKLRAALVNEKSFANMARRLKMGEFLR-----------------LSQAEENNGG 104
Query: 186 VDAPKVLADIVESTIGAVFIDCN-SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
+ +L+D E+ +GA++++ + + EL P I L+ T L EV Q
Sbjct: 105 REKDSILSDAFEAVMGAIYLEAGLLKVREISISLLELCYPQIDFAHLEKDYKTALQEVTQ 164
Query: 245 KN-------KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+L F K+ + + + + R + KK+ A AAK AL I++
Sbjct: 165 ATLGVIPTYELIGSFGPDHKKEFEIALLLNGKEISRAVGSSKKQ-AQQLAAKIALEKIKK 223
>gi|424827547|ref|ZP_18252334.1| ribonuclease III [Clostridium sporogenes PA 3679]
gi|365979987|gb|EHN16028.1| ribonuclease III [Clostridium sporogenes PA 3679]
Length = 234
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 78 FNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
F ++ LL+ A T S + YERLE++GDSVL L++++ + Y + G LTR
Sbjct: 19 FKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYEKYEDKKEGELTRK 78
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
R+ V L +A + L YL+ +K E++ G + +LAD
Sbjct: 79 RAIIVCENSLYEIAKRWDLGFYLQMSKG---EEL--------------TGGRERVSILAD 121
Query: 195 IVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKF 252
VES I A+++D + + + V K FKE+++ + E + + T V Q N L + +
Sbjct: 122 CVESIIAAIYLDKGLDEAREFVMKNFKEIIEKAMRDEIILDYKTTLQEIVQQNNDLTINY 181
Query: 253 VDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L K+ H + I++++ G G KKE N AAK+AL N+
Sbjct: 182 -ELLKQEGPPHRRKFFTNVTIDNEVRGTGIGYSKKEAEQN-AAKEALKNL 229
>gi|317050765|ref|YP_004111881.1| ribonuclease III [Desulfurispirillum indicum S5]
gi|316945849|gb|ADU65325.1| ribonuclease III [Desulfurispirillum indicum S5]
Length = 247
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 41/251 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF--------SYERLEYVGDSVLNLLLTKEQFFL 122
EE LGY F K LL A T S FF + ERLE++GDSVL L+++
Sbjct: 15 EERLGYVFMRKELLHTALTHRS----FFHSNRKSAENNERLEFLGDSVLGLIISHYLLES 70
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREFSEAILDYPLH 181
+P G L+++RS VN + L+RVA K+ L +YL +
Sbjct: 71 FPAQSEGKLSKIRSFIVNEKTLSRVAREKIQLGRYL-----------------FIGKGEE 113
Query: 182 SNGLVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTEL 239
+ G + +LAD +E+ + A+++D N++ +I+ ++ E ++ + + + TEL
Sbjct: 114 NTGGRNKASILADAMEAVVAAIYLDGGLNAARNIILELMSEEIESTVFSNRHRDYK-TEL 172
Query: 240 YEVCQKN-------KLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
E+ Q + +++ ++ ++ A +++ DQ+ G G KK A +AA+ A+
Sbjct: 173 QELSQGSLSLAPEYRVEREWGPDHQKHFAVSLYLHDQVYGHGEGTSKKS-AEQKAARAAM 231
Query: 293 NNIERLLNEKR 303
+ L +KR
Sbjct: 232 EKLRAELEKKR 242
>gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064]
Length = 206
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 33/218 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRG 274
Q+++ + D+ E+ H + + Q+LG+G
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKG 206
>gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ ++T+ + P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYIITRHLYEDPRQHSP 1999
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF 171
G+LT LRSA VN A +A++ G HK+ RH P L + I F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1643 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1701
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1702 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1741
>gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1]
gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1]
Length = 232
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 33/231 (14%)
Query: 78 FNNKNLLEEAFTDPSCPERFF----SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
F +L +EAFT S YERLE++GD+VL L ++ F L+P++P G+LT
Sbjct: 14 FQKLSLYKEAFTHASYANEAHHYNKDYERLEFMGDAVLQLYVSDFLFHLFPDVPEGTLTT 73
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LRS V E LAR + K L + L E S G + VLA
Sbjct: 74 LRSKLVREESLARFS------KELGLGELLFLGVGEEKS-----------GGRERESVLA 116
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQKNKLKVK 251
+I ES IGA+++DC D V K+ ++ + ++ T T L E+ Q ++ K
Sbjct: 117 NIFESFIGALYLDCGK--DEVIKILEQTIFQHVNDLDYDDITDYKTTLQELIQADQRKTV 174
Query: 252 FVDLWKEST-------AFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L + S + +++ LG G KK A +AAKDALN +
Sbjct: 175 TYELLETSGPSNAPEFKVAVIMDEMRLGVGKGTSKKR-AEQQAAKDALNKL 224
>gi|270290359|ref|ZP_06196584.1| ribonuclease III [Pediococcus acidilactici 7_4]
gi|418069035|ref|ZP_12706315.1| ribonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281140|gb|EFA26973.1| ribonuclease III [Pediococcus acidilactici 7_4]
gi|357537768|gb|EHJ21791.1| ribonuclease III [Pediococcus acidilactici MA18/5M]
Length = 232
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 37/237 (15%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSC----PERFFS-YERLEYVGDSVLNLLLTKEQFFLY 123
D E+ F LL+EAFT S P + YER+E++GD+VL L++++ + Y
Sbjct: 8 DLSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRY 67
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
P +P G LTRLR+A V + A + +Y+R K EE+ +
Sbjct: 68 PEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKG--EEK---------------S 110
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELY 240
G P +L DI ES IGA+++D V K ++++ P + E H + +EL
Sbjct: 111 GARQRPSLLCDIFESFIGALYLD--QGRQAVEKFVRQVIFPKLD-EGRFDHIIDHKSELQ 167
Query: 241 EVCQKN-KLKVKFVDLWKEST-------AFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
E+ Q+N ++++ + +L E+ + +Q+L +G+ KK N A K
Sbjct: 168 ELLQRNGEVEINY-ELISETGPDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANK 223
>gi|169824545|ref|YP_001692156.1| ribonuclease III [Finegoldia magna ATCC 29328]
gi|302380368|ref|ZP_07268838.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|303233642|ref|ZP_07320296.1| ribonuclease III [Finegoldia magna BVS033A4]
gi|417926170|ref|ZP_12569578.1| ribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167831350|dbj|BAG08266.1| ribonuclease III [Finegoldia magna ATCC 29328]
gi|302311858|gb|EFK93869.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|302495076|gb|EFL54828.1| ribonuclease III [Finegoldia magna BVS033A4]
gi|341589983|gb|EGS33236.1| ribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 238
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 114/242 (47%), Gaps = 44/242 (18%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLY-- 123
EE L YRF + NLL AF S +Y ERLE++GDSVL+L+++ FLY
Sbjct: 13 EEKLDYRFTDINLLNLAFFHSSYGNENKAYKNISNERLEFLGDSVLDLVVSD---FLYNS 69
Query: 124 -PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
+L G++T++RS V + + +A L L KYL ++ +
Sbjct: 70 KSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYL-----------------MMGHGEFI 112
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELY 240
+G + P VLAD E+ GA+++D S+ IV FK L I ++ T L
Sbjct: 113 SGGSEKPSVLADTFEAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQ 172
Query: 241 EVCQK---NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKD 290
E QK +KLK K V KE H ++ + ++G G + K+ A AA++
Sbjct: 173 ENNQKKSRDKLKYKIV---KEEGPDHDKKFYVDVYEGNLVIGSG-FGSSKKHAEQDAARN 228
Query: 291 AL 292
AL
Sbjct: 229 AL 230
>gi|422344902|ref|ZP_16425825.1| ribonuclease III [Selenomonas noxia F0398]
gi|355376044|gb|EHG23305.1| ribonuclease III [Selenomonas noxia F0398]
Length = 238
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 41/225 (18%)
Query: 74 LGYRFNNKNLLEEAFTDPS----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+G FN+ LL+EA T PS + ERLE++GD+VL L + + +P+ G
Sbjct: 20 MGVSFNDFALLDEALTHPSYTNEAKDTIPHNERLEFLGDAVLELASSTYLYARFPDCSEG 79
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT++R++ V ++ LAR+A L L LR + EF NG D
Sbjct: 80 ELTKMRASLVQSDTLARLARALDLGSCLRLGRG-------EF----------HNGGADRQ 122
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPV-----TELYEV 242
L + E+ IGAV++D W+ KE + +S E +K V T L E
Sbjct: 123 NNLENAFEAVIGAVYLDAG------WETAKEYVARQLSREADHIKKAQVVHDYKTTLQEH 176
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
Q+ + K +L ES H + +++Q +G GA KK
Sbjct: 177 IQQRRNKGIVYELIAESGPDHDKRFTMRVLVDNQPIGEGAGRSKK 221
>gi|304384763|ref|ZP_07367109.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328957|gb|EFL96177.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 235
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 37/237 (15%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSC----PERFFS-YERLEYVGDSVLNLLLTKEQFFLY 123
D E+ F LL+EAFT S P + YER+E++GD+VL L++++ + Y
Sbjct: 11 DLSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRY 70
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
P +P G LTRLR+A V + A + +Y+R K EE+ +
Sbjct: 71 PEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKG--EEK---------------S 113
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELY 240
G P +L DI ES IGA+++D V K ++++ P + E H + +EL
Sbjct: 114 GARQRPSLLCDIFESFIGALYLDQGRQ--AVEKFVRQVIFPKLD-EGRFDHIIDHKSELQ 170
Query: 241 EVCQKN-KLKVKFVDLWKEST-------AFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
E+ Q+N ++++ + +L E+ + +Q+L +G+ KK N A K
Sbjct: 171 ELLQRNGEVEINY-ELISETGPDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANK 226
>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
Length = 267
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 32/153 (20%)
Query: 82 NLLEEAFTDPSCPERFFSYE--------RLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
++LE+A T R ++YE RLE++GDSVL L++T + +P++P G L +
Sbjct: 29 DILEQALT-----HRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPDMPEGQLAK 83
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+A VN LA VA L L KYLR L G D +LA
Sbjct: 84 LRAAVVNMRALADVARSLDLGKYLR-----------------LGRGEEGTGGRDKSSILA 126
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
D +E+ IG V++D +D ++V +L P+I
Sbjct: 127 DTLEALIGTVYVD--KGLDEAFRVVHQLFDPLI 157
>gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583]
gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1]
gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2]
gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3]
gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5]
gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96]
gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704]
gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1]
gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol]
gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1]
gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6]
gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188]
gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11]
gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98]
gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1]
gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428768209|ref|YP_007154320.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|75541427|sp|Q82ZG1.1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583]
gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1]
gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2]
gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3]
gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5]
gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96]
gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704]
gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1]
gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol]
gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1]
gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6]
gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188]
gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11]
gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98]
gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1]
gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76]
gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186382|emb|CCO73606.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 230
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPN 125
+E G F++ NLLE+AFT S R+ ERLE++GD+VL L++++ + +P
Sbjct: 10 KERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPE 69
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G LT++R+A V + LA+ A + Y+ +L ++G
Sbjct: 70 LPEGKLTKMRAAIVREDSLAKFAKECHFDNYI-----------------LLGKGEEASGG 112
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEV 242
+L D+ E+ +GA+++D + K ++++ P I +H + T+L EV
Sbjct: 113 RTRASLLCDLFEAFLGALYLD--QKVGAAKKFIEDVIFPKIDAGAF-SHEMDHKTQLQEV 169
Query: 243 CQ-KNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
Q K + +++ L KE H +++ +L+G G KK +A AA+ AL +
Sbjct: 170 LQRKGDVSIEY-RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKK-LAEQDAAERALKS 227
Query: 295 I 295
I
Sbjct: 228 I 228
>gi|449133751|ref|ZP_21769275.1| ribonuclease III [Rhodopirellula europaea 6C]
gi|448887627|gb|EMB17992.1| ribonuclease III [Rhodopirellula europaea 6C]
Length = 296
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 28/231 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+EILGY F + +LL A T S R S ERLE++GDSVL L + + F YP G
Sbjct: 68 QEILGYEFQDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEG 127
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT+++SA V+ +VA KLGL + L + + + YP
Sbjct: 128 DLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR---------SYP---------K 169
Query: 190 KVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
+++D+ E+ I A++ID I D + + E + + + H L + Q+
Sbjct: 170 SLVSDVFEAVIAALYIDGGPEIVRDRLKQWLAEEVNLAVDTQGSGNHKSV-LQQFAQREL 228
Query: 248 LKVKFVDLWKESTAFH--IFIEDQLLGRGAYAP----KKEIAHNRAAKDAL 292
L +E+ H +F+ ++ +AP K+ A RAA +AL
Sbjct: 229 SATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 279
>gi|325981700|ref|YP_004294102.1| ribonuclease III [Nitrosomonas sp. AL212]
gi|325531219|gb|ADZ25940.1| ribonuclease III [Nitrosomonas sp. AL212]
Length = 237
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 22/181 (12%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
E LGY F +LL+ A T S ERLE++GD++LN +++ + +P LP G L
Sbjct: 19 ERLGYCFTQSHLLQTALTHRS--HSLPHNERLEFLGDAILNCVISGIIYKHFPELPEGHL 76
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
+RLR+ VN + L+ +A+ L + K LR L E +++ +G P +
Sbjct: 77 SRLRANFVNQKALSSIALNLQMDKLLR----LGEGELK-------------SGGCHRPSI 119
Query: 192 LADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
LAD E+ +GA+++D + + +V ++ L++ I E+ P T L E Q KL
Sbjct: 120 LADTFEALLGAIYLDSDYAQVETVVMAIYLPLIQN-IDLESPAKDPKTLLQEFLQSQKLS 178
Query: 250 V 250
+
Sbjct: 179 L 179
>gi|403510495|ref|YP_006642133.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
gi|402803356|gb|AFR10766.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
Length = 267
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 19/127 (14%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE++GDSVL L++T F +P+LP G L +LR+A VN LA VA LG+ Y+R
Sbjct: 46 ERLEFLGDSVLGLVVTDTLFRKHPDLPEGQLAKLRAAVVNMRALADVARGLGIGAYIR-- 103
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
L G D +LAD +E+ IGAV++D +D+ +
Sbjct: 104 ---------------LGRGEEGTGGRDKSSILADTLEAIIGAVYLD--RGLDVASEFVHR 146
Query: 221 LLKPMIS 227
L P+I+
Sbjct: 147 LFDPLIA 153
>gi|257063721|ref|YP_003143393.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
gi|256791374|gb|ACV22044.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
Length = 300
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 31/233 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+EI+G +F N ++L A T PS E SYERLE++GDS+L ++ E F YP+L
Sbjct: 16 QEIIGTQFGNTDILLHAITHPSATEGKPVKLSYERLEFLGDSILGAIVANEAFHRYPDLD 75
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTR++ A V+ L++VA +LG + + LHS
Sbjct: 76 EGGLTRIKVALVSGASLSKVAAELGFEDIIVFGSS---------EQGTGKRGLHS----- 121
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE--TLKTHPVTELYEVCQK 245
L ++ E+ + A+++D ++ + L P +S E T +P + L E Q+
Sbjct: 122 ---ALENVYEAVVAALYLD--QGMEGARSFVMKTLVPRMSRELATEPENPKSALQEKLQE 176
Query: 246 NKL--KVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+ K V+ + +F + L G KKE + ++AAK AL
Sbjct: 177 EGITPTYKLVETQGPPHDRTFVSQVFAGMKALASGMGRTKKE-SESQAAKAAL 228
>gi|241662605|ref|YP_002980965.1| ribonuclease III [Ralstonia pickettii 12D]
gi|309781187|ref|ZP_07675924.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
gi|404393900|ref|ZP_10985704.1| ribonuclease 3 [Ralstonia sp. 5_2_56FAA]
gi|240864632|gb|ACS62293.1| ribonuclease III [Ralstonia pickettii 12D]
gi|308920008|gb|EFP65668.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
gi|348615710|gb|EGY65221.1| ribonuclease 3 [Ralstonia sp. 5_2_56FAA]
Length = 256
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 37/244 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LGYRF+ LL++A T S ERLE++GDS+LN + + ++ L G
Sbjct: 7 QQRLGYRFSKPELLQQALTHRS--HSAMHNERLEFLGDSILNCAVADMLYGMFGKLDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+R+R+ V + L +A L L LR L E +++ +G P
Sbjct: 65 LSRVRANLVKQQALYEIAQMLQLPDALR----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNK 247
+LAD +E+ GAVF+D D + ++L P+ + P TL T L E Q +K
Sbjct: 108 ILADALEAIFGAVFLD--GGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHK 165
Query: 248 LKVKFVDLWKESTAFH----------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ + + A H +E ++ G GA + A AAK AL R
Sbjct: 166 IALPLYTVVATHGAAHNQQFEVECSIPKLEIRVSGSGA---SRRAAEQSAAKLALEEAHR 222
Query: 298 LLNE 301
L+ +
Sbjct: 223 LVPQ 226
>gi|451936545|ref|YP_007460399.1| ribonuclease III [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777468|gb|AGF48443.1| ribonuclease III [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 241
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 25/165 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E L Y+F+N NLLE A T S P ERLE++GDSVLN +T F Y ++
Sbjct: 7 ERSLDYKFSNINLLELALTHRSNGSPHN----ERLEFLGDSVLNFAITIFLFEKYADIDE 62
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G L+RLR++ V LA +A L L KYL+ L E +++ +G +
Sbjct: 63 GGLSRLRASLVQQNSLAIIASDLNLSKYLK----LGEGELK-------------SGGCNR 105
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
P +LAD +E+ GA+F D SS + V V ++ +++ LKT
Sbjct: 106 PSILADCLEAVFGAIFKD--SSFNEVQIVIEKQFVKLLNNLDLKT 148
>gi|338811275|ref|ZP_08623500.1| ribonuclease III [Acetonema longum DSM 6540]
gi|337276744|gb|EGO65156.1| ribonuclease III [Acetonema longum DSM 6540]
Length = 239
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 35/240 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
+G RF++ L +A S + ERLE++GD+VL+L+++ + +P LP
Sbjct: 17 IGIRFSDLILFHQALIHTSYANEYKGVDIVDNERLEFLGDAVLDLVISDYLYRYFPRLPE 76
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT+ R+ V + LA+ A+KLG+ ++L K L S+G +
Sbjct: 77 GELTKARATIVCEQTLAQHAVKLGIGEHLLLGKGEL-----------------SSGGRER 119
Query: 189 PKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
+LAD E+ IGA+++D N + + K F+ L M+ T L E QKN
Sbjct: 120 VSILADAFEAVIGAIYLDAGFNCVFEFILKHFQRDL-LMVERGEYNNDYKTILQERVQKN 178
Query: 247 K-LKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
KV++ ++ E H + + + LG GA KKE N AAK AL + L
Sbjct: 179 TDGKVQY-EVVSERGPDHDKLFEVAVSVNGRRLGIGAGKTKKESEQN-AAKQALGELHTL 236
>gi|299144133|ref|ZP_07037213.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518618|gb|EFI42357.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 233
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 41/244 (16%)
Query: 73 ILGYRFNNKNLLEEAFTDPSCPERF-----FSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+L Y F N + A T S S ERLE++GD+VL+L++ + ++ + NL
Sbjct: 11 LLEYEFKNDKYINIALTHSSYINEHNLKDTVSNERLEFLGDAVLDLIIGEYFYYSHKNLK 70
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQ--IREFSEAILDYPLHSNGL 185
GSL++LRS VN L ++A + + ++ K ++ + +RE
Sbjct: 71 EGSLSKLRSKVVNENSLYKIATNISIGDFMYFGKGEIKNKGNLRE--------------- 115
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI-SPETLKT--HPVTELYEV 242
L+D +E+ IGA++ID +D V KV L I E LK+ T L E
Sbjct: 116 ----STLSDCLEALIGAIYID--GGLDAVRKVILRLFHDRIMEVENLKSLEDYKTMLQEC 169
Query: 243 CQKNKL-KVKFVDLWKEST-----AFH--IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
Q+NK+ +K+V ++ E F+ + I D ++G G Y K+ + AAK+AL
Sbjct: 170 IQRNKMGNIKYV-IYDEKGPSNDKVFYSNVLINDIIIGNG-YGKTKKSSEQLAAKNALIR 227
Query: 295 IERL 298
I L
Sbjct: 228 IGEL 231
>gi|417644614|ref|ZP_12294592.1| ribonuclease III, partial [Staphylococcus warneri VCU121]
gi|330684635|gb|EGG96340.1| ribonuclease III [Staphylococcus epidermidis VCU121]
Length = 235
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 34/232 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ +NN L ++AF+ S +R ERLE++GD+VL L +++ F +P+LP
Sbjct: 24 LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+ L++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIKLNELI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYE-VCQK 245
P +++D E+ +GA+++D +DIVW ++++ P + + L T+ E V ++
Sbjct: 127 PSLISDAFEAFVGALYLD--QGLDIVWDFAEKIIFPYVEDDELDGVVDFKTQFQEFVHRQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDA 291
NK V + + +E A H + +E Q + G KKE + +AA+ A
Sbjct: 185 NKGDVTYRLIKEEGPAHHRLFTSEVILEKQAVAEGQGKTKKE-SEQKAAERA 235
>gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104]
gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22]
gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322]
gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8]
gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712]
gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613]
gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248]
gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855]
gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860]
gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109]
gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411]
gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470]
gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635]
gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102]
gi|384514329|ref|YP_005709422.1| ribonuclease III [Enterococcus faecalis OG1RF]
gi|384516896|ref|YP_005704201.1| ribonuclease III [Enterococcus faecalis 62]
gi|397701246|ref|YP_006539034.1| ribonuclease III [Enterococcus faecalis D32]
gi|422687023|ref|ZP_16745213.1| ribonuclease III [Enterococcus faecalis TX4000]
gi|422689979|ref|ZP_16748069.1| ribonuclease III [Enterococcus faecalis TX0630]
gi|422692405|ref|ZP_16750426.1| ribonuclease III [Enterococcus faecalis TX0031]
gi|422696091|ref|ZP_16754068.1| ribonuclease III [Enterococcus faecalis TX4244]
gi|422698495|ref|ZP_16756387.1| ribonuclease III [Enterococcus faecalis TX1346]
gi|422700459|ref|ZP_16758306.1| ribonuclease III [Enterococcus faecalis TX1342]
gi|422704076|ref|ZP_16761891.1| ribonuclease III [Enterococcus faecalis TX1302]
gi|422708000|ref|ZP_16765534.1| ribonuclease III [Enterococcus faecalis TX0043]
gi|422711137|ref|ZP_16768070.1| ribonuclease III [Enterococcus faecalis TX0027]
gi|422713897|ref|ZP_16770645.1| ribonuclease III [Enterococcus faecalis TX0309A]
gi|422718478|ref|ZP_16775131.1| ribonuclease III [Enterococcus faecalis TX0309B]
gi|422720836|ref|ZP_16777443.1| ribonuclease III [Enterococcus faecalis TX0017]
gi|422723566|ref|ZP_16780101.1| ribonuclease III [Enterococcus faecalis TX2137]
gi|422725696|ref|ZP_16782154.1| ribonuclease III [Enterococcus faecalis TX0312]
gi|422728465|ref|ZP_16784882.1| ribonuclease III [Enterococcus faecalis TX0012]
gi|422732835|ref|ZP_16789164.1| ribonuclease III [Enterococcus faecalis TX0645]
gi|422736033|ref|ZP_16792298.1| ribonuclease III [Enterococcus faecalis TX1341]
gi|422738680|ref|ZP_16793871.1| ribonuclease III [Enterococcus faecalis TX2141]
gi|422868345|ref|ZP_16914888.1| ribonuclease III [Enterococcus faecalis TX1467]
gi|424674100|ref|ZP_18111026.1| ribonuclease III [Enterococcus faecalis 599]
gi|424677347|ref|ZP_18114199.1| ribonuclease III [Enterococcus faecalis ERV103]
gi|424681039|ref|ZP_18117835.1| ribonuclease III [Enterococcus faecalis ERV116]
gi|424685288|ref|ZP_18121988.1| ribonuclease III [Enterococcus faecalis ERV129]
gi|424688592|ref|ZP_18125197.1| ribonuclease III [Enterococcus faecalis ERV25]
gi|424690566|ref|ZP_18127098.1| ribonuclease III [Enterococcus faecalis ERV31]
gi|424694302|ref|ZP_18130705.1| ribonuclease III [Enterococcus faecalis ERV37]
gi|424697969|ref|ZP_18134281.1| ribonuclease III [Enterococcus faecalis ERV41]
gi|424701524|ref|ZP_18137696.1| ribonuclease III [Enterococcus faecalis ERV62]
gi|424704525|ref|ZP_18140620.1| ribonuclease III [Enterococcus faecalis ERV63]
gi|424711652|ref|ZP_18143864.1| ribonuclease III [Enterococcus faecalis ERV65]
gi|424716431|ref|ZP_18145742.1| ribonuclease III [Enterococcus faecalis ERV68]
gi|424721947|ref|ZP_18151014.1| ribonuclease III [Enterococcus faecalis ERV72]
gi|424724735|ref|ZP_18153673.1| ribonuclease III [Enterococcus faecalis ERV73]
gi|424727557|ref|ZP_18156186.1| ribonuclease III [Enterococcus faecalis ERV81]
gi|424744501|ref|ZP_18172795.1| ribonuclease III [Enterococcus faecalis ERV85]
gi|424753913|ref|ZP_18181842.1| ribonuclease III [Enterococcus faecalis ERV93]
gi|424759045|ref|ZP_18186718.1| ribonuclease III [Enterococcus faecalis R508]
gi|430360155|ref|ZP_19426132.1| ribonuclease III [Enterococcus faecalis OG1X]
gi|430366186|ref|ZP_19427367.1| ribonuclease III [Enterococcus faecalis M7]
gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104]
gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22]
gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322]
gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8]
gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712]
gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613]
gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411]
gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109]
gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860]
gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855]
gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248]
gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102]
gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635]
gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470]
gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137]
gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000]
gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017]
gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027]
gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141]
gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244]
gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012]
gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031]
gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043]
gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312]
gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645]
gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302]
gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341]
gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342]
gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346]
gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B]
gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630]
gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A]
gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62]
gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF]
gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467]
gi|397337885|gb|AFO45557.1| ribonuclease III [Enterococcus faecalis D32]
gi|402352044|gb|EJU86909.1| ribonuclease III [Enterococcus faecalis 599]
gi|402352426|gb|EJU87277.1| ribonuclease III [Enterococcus faecalis ERV116]
gi|402354640|gb|EJU89443.1| ribonuclease III [Enterococcus faecalis ERV103]
gi|402359269|gb|EJU93911.1| ribonuclease III [Enterococcus faecalis ERV129]
gi|402360051|gb|EJU94660.1| ribonuclease III [Enterococcus faecalis ERV25]
gi|402363764|gb|EJU98222.1| ribonuclease III [Enterococcus faecalis ERV31]
gi|402370958|gb|EJV05137.1| ribonuclease III [Enterococcus faecalis ERV37]
gi|402371555|gb|EJV05712.1| ribonuclease III [Enterococcus faecalis ERV62]
gi|402374205|gb|EJV08241.1| ribonuclease III [Enterococcus faecalis ERV41]
gi|402381547|gb|EJV15250.1| ribonuclease III [Enterococcus faecalis ERV63]
gi|402383084|gb|EJV16701.1| ribonuclease III [Enterococcus faecalis ERV65]
gi|402387948|gb|EJV21400.1| ribonuclease III [Enterococcus faecalis ERV68]
gi|402389984|gb|EJV23356.1| ribonuclease III [Enterococcus faecalis ERV72]
gi|402393981|gb|EJV27183.1| ribonuclease III [Enterococcus faecalis ERV73]
gi|402396232|gb|EJV29301.1| ribonuclease III [Enterococcus faecalis ERV81]
gi|402398832|gb|EJV31749.1| ribonuclease III [Enterococcus faecalis ERV85]
gi|402403439|gb|EJV36113.1| ribonuclease III [Enterococcus faecalis ERV93]
gi|402405221|gb|EJV37819.1| ribonuclease III [Enterococcus faecalis R508]
gi|429513067|gb|ELA02660.1| ribonuclease III [Enterococcus faecalis OG1X]
gi|429517200|gb|ELA06667.1| ribonuclease III [Enterococcus faecalis M7]
Length = 243
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPN 125
+E G F++ NLLE+AFT S R+ ERLE++GD+VL L++++ + +P
Sbjct: 23 KERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPE 82
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G LT++R+A V + LA+ A + Y+ +L ++G
Sbjct: 83 LPEGKLTKMRAAIVREDSLAKFAKECHFDNYI-----------------LLGKGEEASGG 125
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEV 242
+L D+ E+ +GA+++D + K ++++ P I +H + T+L EV
Sbjct: 126 RTRASLLCDLFEAFLGALYLD--QKVGAAKKFIEDVIFPKIDAGAF-SHEMDHKTQLQEV 182
Query: 243 CQ-KNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
Q K + +++ L KE H +++ +L+G G KK +A AA+ AL +
Sbjct: 183 LQRKGDVSIEY-RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKK-LAEQDAAERALKS 240
Query: 295 I 295
I
Sbjct: 241 I 241
>gi|445059847|ref|YP_007385251.1| ribonuclease III [Staphylococcus warneri SG1]
gi|443425904|gb|AGC90807.1| ribonuclease III [Staphylococcus warneri SG1]
Length = 242
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG+ +NN L ++AF+ S +R ERLE++GD+VL L +++ F +P+LP
Sbjct: 24 LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G+LT++R+ V L A K+ L++ + +L G
Sbjct: 84 GNLTKMRATIVCEPSLVIFANKIKLNELI-----------------LLGKGEEKTGGRTR 126
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYE-VCQK 245
P +++D E+ +GA+++D +DIVW ++++ P + + L T+ E V ++
Sbjct: 127 PSLISDAFEAFVGALYLD--QGLDIVWDFAEKIIFPYVEDDELDGVVDFKTQFQEFVHRQ 184
Query: 246 NKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
NK V + + +E A H + +E Q + G KKE + +AA+ A ++
Sbjct: 185 NKGDVTYRLIKEEGPAHHRLFTSEVILEKQAVAEGQGKTKKE-SEQKAAERAYKQMK 240
>gi|365174613|ref|ZP_09362054.1| ribonuclease III [Synergistes sp. 3_1_syn1]
gi|363614536|gb|EHL66027.1| ribonuclease III [Synergistes sp. 3_1_syn1]
Length = 230
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 25/181 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPS-CPERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
L Y+FN+ LL+EA T S E + ERLE++GD+VL L+ + + F YP+ G L
Sbjct: 18 LRYQFNDTELLQEALTHSSYANENGVKFNERLEFLGDAVLELVTSDKLFSSYPDYDEGQL 77
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
TRLR+ V L+ A ++GL +R K L++ +G D+ V
Sbjct: 78 TRLRARIVCKNSLSLWASEMGLKNLIRIGKSLVK-----------------SGPTDS--V 118
Query: 192 LADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLK 249
AD VE+ GA+F+D ++++ V KP IS + P TEL E Q+ +
Sbjct: 119 AADCVEALFGAIFLDGGFPNAVEAVSNFLD--TKPEISGAAVIKDPKTELQEYFQRQGMD 176
Query: 250 V 250
V
Sbjct: 177 V 177
>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
Length = 228
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 46/242 (19%)
Query: 71 EEILGYRFNNKNLLEEA-----FTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E+ +GY F+N+ LLE+A FT+ + + ERLE++GDSV++L++ F +P+
Sbjct: 5 EKTIGYTFHNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFVNFPD 64
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+P G LT+LR++ V LA A ++ L L K EE HS G
Sbjct: 65 MPEGELTKLRASLVCDRSLAEFAGRIDLGNQLIMGKG--EE--------------HSGGR 108
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV-------TE 238
L D E+ +GA+++D + + + I P+TL + + T
Sbjct: 109 QRRSN-LEDAFEALVGAIYLDGG------LEAARSFVLGFI-PKTLDLNSISRVTDYKTA 160
Query: 239 LYEVCQKN-KLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKD 290
L E+ QKN + K+ +V L ES H + + ++G G+ KK+ N AAK
Sbjct: 161 LQEIIQKNPEEKLSYV-LVSESGPDHDKMFEAEVHLNSNVIGTGSGKSKKQAEQN-AAKQ 218
Query: 291 AL 292
AL
Sbjct: 219 AL 220
>gi|402818492|ref|ZP_10868075.1| ribonuclease 3 [Paenibacillus alvei DSM 29]
gi|402503958|gb|EJW14490.1| ribonuclease 3 [Paenibacillus alvei DSM 29]
Length = 232
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPN 125
++ L F N+ LL++AFT S RF + ERLE++GD+VL L +++ + P
Sbjct: 9 QQKLNIHFRNRQLLKQAFTHASYVNEHRFGQHQDNERLEFLGDAVLELTVSEFLYHRCPT 68
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
P G LT++R++ V L + A +L KY+ +L G
Sbjct: 69 RPEGELTKMRASIVCEPSLVKFANQLNFGKYV-----------------LLGKGEELTGG 111
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D +++V +E + P IS + L+T+ T+L E+
Sbjct: 112 RTRPALLADVFESFIGALYLD--QGLEVVRDFLREHIFPQISLDGKLQTNDYKTQLQELT 169
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
Q + L + +E H + + D+ LGRG KK
Sbjct: 170 QHHNLGSLEYRIIEERGPAHEREFVSEVCMGDECLGRGVGRSKK 213
>gi|340355030|ref|ZP_08677724.1| ribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622827|gb|EGQ27340.1| ribonuclease III [Sporosarcina newyorkensis 2681]
Length = 255
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
++ LG +F ++NLL AFT S ++F ERLE++GD+VL L ++K F P
Sbjct: 28 QQQLGVQFKDENLLFNAFTHSSYVNEHRRKKFSDNERLEFLGDAVLELGVSKFLFRTEPT 87
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G LT+LR+A V L + + +L Y+ +L G
Sbjct: 88 KSEGELTKLRAAIVCEPSLVKFSNELHFGDYI-----------------LLGKGEELTGG 130
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYE-V 242
P +LAD+ E+ IGA+++D +++V + K ++ P IS T + L E V
Sbjct: 131 RMRPALLADVFEAYIGALYLD--QGMEVVEEFLKRIVFPKISVGAFSHVTDYKSRLQELV 188
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
QKN +++ ++ +E H + ++DQ LG+G KKE A AA+ A+ +
Sbjct: 189 QQKNHGPLQY-EVVEEKGPAHAKKFVTVVNLDDQQLGKGIGKSKKE-AEQEAARRAIEQL 246
Query: 296 ERLLNE 301
+ ++E
Sbjct: 247 QSQIDE 252
>gi|381209990|ref|ZP_09917061.1| ribonuclease III [Lentibacillus sp. Grbi]
Length = 227
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 38/242 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
E+ L FN+++LL++AFT S + F ERLE++GD+VL L +++ +
Sbjct: 7 EQQLDITFNDQSLLKQAFTHSSYVNEHRDKNFSDNERLEFLGDAVLELGVSQYLYKQKER 66
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
L G LT+LR++ V L + +L YL K EEQ +G
Sbjct: 67 LAEGDLTKLRASIVCEPSLVEFSRELDFGDYLFLGKG--EEQ---------------SGG 109
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEV 242
+ P +LAD+ E+ +GA+++D D+V + K+ + P I+ +H + ++L E
Sbjct: 110 RERPAILADVFEAFLGALYLD--QGYDVVIQFLKQHVYPKITTGAF-SHAMDYKSKLQEQ 166
Query: 243 CQKNK-LKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
Q+ + + +V + E H + I + + G GA KKE A RAAK AL+
Sbjct: 167 VQQTRNHSIDYV-IADEKGPSHDKEFIAQVIINNHVSGEGAGHTKKE-AEQRAAKHALDT 224
Query: 295 IE 296
I+
Sbjct: 225 ID 226
>gi|313768121|ref|YP_004061552.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1]
gi|312599728|gb|ADQ91749.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1]
Length = 242
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 39/222 (17%)
Query: 78 FNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSA 137
F +K++L+E D S S+E LE++GDSVL ++TK F Y N G LT+ R+
Sbjct: 26 FRHKSILKE---DESLDG---SFETLEFIGDSVLGFVITKFLFDRYENRQEGFLTKARTK 79
Query: 138 NVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVE 197
V E LA +A KLGL+ +++ + E+ +R N PK+L D+ E
Sbjct: 80 LVRGETLADIATKLGLYNWVQMD----EKGMR-------------NEWFKNPKILEDVFE 122
Query: 198 STIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVT-------ELYEVCQKNKLKV 250
+ +GA+++D + + +L +PE + + + L CQ N L +
Sbjct: 123 ALVGAIYMDLG-----LLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHLMRHCQTNNLSL 177
Query: 251 -KFVDLWKESTAFHI--FIEDQLLGRGAYAPKKEIAHNRAAK 289
++ L E+ F+I ++++ LGRG +A K+ A AAK
Sbjct: 178 PEYRVLNHENGIFYIDVYVDNVFLGRG-HAKNKKQAEQHAAK 218
>gi|314933411|ref|ZP_07840776.1| ribonuclease III [Staphylococcus caprae C87]
gi|313653561|gb|EFS17318.1| ribonuclease III [Staphylococcus caprae C87]
Length = 245
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 37/241 (15%)
Query: 65 ANNLDEEEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQ 119
AN +DE G+ FNN +L ++AF+ S R ERLE++GD+VL L +++
Sbjct: 18 ANKMDE---WGFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYL 74
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F +P+LP G+LT++R+ V L A K+ L++ + +L
Sbjct: 75 FDKHPHLPEGNLTKMRATIVCEPSLVIFANKIDLNELI-----------------LLGKG 117
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL--KTHPVT 237
G P +++D E+ +GA+++D +D VWK ++++ P + + L T
Sbjct: 118 EEKTGGRTRPSLISDAFEAFVGALYLD--QGLDTVWKFAEKVIFPYVEDDELVGVVDFKT 175
Query: 238 ELYE-VCQKNKLKVKFVDLWKESTAFH------IFIEDQLLGRGAYAPKKEIAHNRAAKD 290
+ E V ++NK V + + +E A H + +E+ + G KKE + +AA+
Sbjct: 176 QFQEYVHRQNKGDVTYRLIKEEGPAHHRLFTSEVILENNAVAEGKGKTKKE-SEQKAAEQ 234
Query: 291 A 291
A
Sbjct: 235 A 235
>gi|365904207|ref|ZP_09441966.1| ribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 229
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 34/238 (14%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E G FN+K ++E A T S YERLE++GD+VL + +++ F +P L
Sbjct: 12 EDYGITFNDKKMVERAMTHSSYDNEHKELNIGDYERLEFLGDAVLEINISEYLFTHFPEL 71
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P G LTRLRS V T+ A+ A ++ + KYL QI E G
Sbjct: 72 PEGKLTRLRSDIVRTDSFAKFAKQIHIDKYL---------QIGRGEE--------KQGAR 114
Query: 187 DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQ 244
+L DI E+ GA+++D + D+V + +++ P I+ T T L E Q
Sbjct: 115 SRHTLLEDIFEAFNGALYLDQGN--DVVEQFLTQVVYPHIASGEFSEDTDFKTHLQEKLQ 172
Query: 245 KN-KLKVKFVDLWKES----TAFHI--FIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
K+ ++ + + + +E F I +++++L +G Y K+ A AAK AL +
Sbjct: 173 KSGEVDIDYHVVDEEGPDHDKKFEIELIVDNKILSKG-YGYSKKHAEQMAAKRALEEL 229
>gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 243
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 66 NNLDEEEI---LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFL 122
NN+ E + LGY+F N + L +A T S + + ERLE++GDS+LN + K F
Sbjct: 19 NNMQLERLQKKLGYQFTNLDYLLQALTHRSAGAK--NNERLEFLGDSILNFAIGKALFEK 76
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
+P G L+R+R+ V + LA +A + GL +Y++ L+
Sbjct: 77 FPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELK----------------- 119
Query: 183 NGLVDAPKVLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELY 240
+G +L+D VE+ I A+++D + +I V +++LL M P + P T L
Sbjct: 120 SGGYRRESILSDCVEAIIAAIYLDAGMDKAIAQVHLWYQDLLAEM-KPGDAQKDPKTRLQ 178
Query: 241 EVCQKNKL 248
E Q KL
Sbjct: 179 EFLQGRKL 186
>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564354|sp|B2A2N1.1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 230
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 28/196 (14%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE++GD+VL L +++ + YP LP G LT+LR+ V L ++A KL L KYLR
Sbjct: 45 ERLEFLGDAVLELAISETLYKKYPELPEGELTKLRAELVCELSLVKIAEKLDLGKYLRLG 104
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVF 218
K S G D LAD VE+ IGAV++ N + ++ +F
Sbjct: 105 K-----------------GEDSTGGRDRRSTLADTVEALIGAVYLQTNYDQTKQLILDLF 147
Query: 219 KELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFH-------IFIEDQLL 271
K+ L I + + + T + E+ Q + KES H + I ++++
Sbjct: 148 KDQL-SHIDNQRIGDYK-TMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVV 205
Query: 272 GRGAYAPKKEIAHNRA 287
GRG+ KKE N A
Sbjct: 206 GRGSGKSKKEAEQNAA 221
>gi|404370911|ref|ZP_10976226.1| ribonuclease 3 [Clostridium sp. 7_2_43FAA]
gi|404301521|gb|EEH98168.2| ribonuclease 3 [Clostridium sp. 7_2_43FAA]
Length = 232
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 31/240 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYE---RLEYVGDSVLNLLLTKEQFFLYPNLP 127
E+ +G FN LL+ A T S + E R E++GDS+L L +T+ F Y N
Sbjct: 10 EDSIGLTFNEPKLLKTALTHSSYANQHKDQEYNERFEFLGDSILQLCITEYLFLNYKNKS 69
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT++RS V L + KL L ++R ++ E++ G +
Sbjct: 70 EGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRG---EEL--------------TGGRE 112
Query: 188 APKVLADIVESTIGAVFIDCNSSI--DIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
++AD VE+ + +++D D + FKE++ I+ + + + T+L E QK
Sbjct: 113 RVSIIADAVEALLAGIYLDKGLEFVKDYIIGHFKEIIDKAINNDIVLDYK-TKLQEEMQK 171
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+ +L K H + IED+ LG+G KKE N AAK+AL N+E L
Sbjct: 172 SGEVSIIYELLKYEGPPHRRKFFTSVLIEDRELGKGEGYSKKESEQN-AAKEALRNLEEL 230
>gi|386828233|ref|ZP_10115340.1| ribonuclease III [Beggiatoa alba B18LD]
gi|386429117|gb|EIJ42945.1| ribonuclease III [Beggiatoa alba B18LD]
Length = 225
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 27/235 (11%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
++L Y F ++ L A T S R + ERLE++GDS+LN + + F +P G L
Sbjct: 10 KVLNYLFRQESYLTMALTHRSAGSR--NNERLEFLGDSLLNYIAAEALFERFPTASEGEL 67
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKV 191
TR R+ V E LA +A +L L YL+ L+ +G P +
Sbjct: 68 TRSRATLVREETLAEIAQQLNLGDYLQLGGGELK-----------------SGGWRRPSI 110
Query: 192 LADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNKL 248
LAD +E+ GA+++D S I +V LLKP +SP + P T L E Q +
Sbjct: 111 LADALEAVFGAIYLD--SDIQTCKQVILRLLKPRLDKLSPHKITKDPKTCLQEYLQAQQR 168
Query: 249 KV---KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLN 300
+ + + + + H +E Q+ G A + RA + A + +LN
Sbjct: 169 PLPVYRVLTVQGDPPTQHFEVECQVEGLTVPAYGTGDSRRRAEQAAAHKALNILN 223
>gi|374986247|ref|YP_004961742.1| ribonuclease III [Streptomyces bingchenggensis BCW-1]
gi|297156899|gb|ADI06611.1| ribonuclease III [Streptomyces bingchenggensis BCW-1]
Length = 276
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 35/184 (19%)
Query: 51 EKAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYE--------R 102
++AG+ +++++ + L E LGY+ LE A + R F+YE R
Sbjct: 10 KRAGETAQADTASSHTIL--EGRLGYQ------LESALLVRALTHRSFAYENGGLPTNER 61
Query: 103 LEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKP 162
LE++GDSVL L++T + ++P+LP G L +LR+A VN+ LA V L L ++R
Sbjct: 62 LEFLGDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIR---- 117
Query: 163 LLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELL 222
L G D +LAD +E+ IGAV++D +D ++ L
Sbjct: 118 -------------LGRGEEGTGGRDKASILADTLEAVIGAVYLD--KGLDAAAELVHRLF 162
Query: 223 KPMI 226
P+I
Sbjct: 163 DPLI 166
>gi|395763037|ref|ZP_10443706.1| RNase III, ds RNA (partial match) [Janthinobacterium lividum PAMC
25724]
Length = 271
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 37/239 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F + LL++A T S ERLE++GDS+LN ++ + + ++ G L+R
Sbjct: 10 LGYTFQDAGLLQQALTHRSHSS--LHNERLEFLGDSILNCVVASILYERFKSIDEGDLSR 67
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V + L +A L L ++LR L E +++ +G P +LA
Sbjct: 68 LRANLVKQQSLYEIAQTLELSQFLR----LGEGELK-------------SGGFRRPSILA 110
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNKLKV 250
D +E+ +GA+F+D + D V + P+ + P+TL T L E Q K+ +
Sbjct: 111 DTLEALLGAIFLD--TGFDAASMVIRAFYIPILDSVDPQTLGKDAKTLLQEFLQSKKISL 168
Query: 251 KFVDLWKESTAFHIF----------IEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
++ A H + Q+ GRG + AAK AL+ E+ L
Sbjct: 169 PQYNVVATHGAAHSQEFEIECLVPKLNIQVYGRGG---SRRAGEQAAAKLALDVAEQAL 224
>gi|114331755|ref|YP_747977.1| ribonuclease III [Nitrosomonas eutropha C91]
gi|122313494|sp|Q0AF70.1|RNC_NITEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|114308769|gb|ABI60012.1| RNAse III [Nitrosomonas eutropha C91]
Length = 245
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 29/190 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F +LL+EA T S F + ERLE++GDSVLN ++ F + LP G LTR
Sbjct: 31 LGYTFKQPDLLQEALTHRSLG--FPNNERLEFLGDSVLNCAVSTLLFKRFLLLPEGDLTR 88
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ VN + L ++A LG+ + + LL + R+ +G P +LA
Sbjct: 89 LRANFVNQDALHQLASALGIGELI-----LLGDGERK------------SGGHQRPSILA 131
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNKLKV 250
+ +E+ IGA++++ S + V +V L P+++ P+ P T L E Q K
Sbjct: 132 NAMEAIIGAIYLE--SGFEKVDQVIVALYDPLLNQLDPDLFGKDPKTLLQEYLQSRK--- 186
Query: 251 KFVDLWKEST 260
VDL + ST
Sbjct: 187 --VDLPEYST 194
>gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134]
gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134]
Length = 243
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC--PERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPN 125
+E G F++ NLLE+AFT S R+ ERLE++GD+VL L++++ + +P
Sbjct: 23 KERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPE 82
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
LP G LT++R+A V + LA+ A + Y+ +L ++G
Sbjct: 83 LPEGKLTKMRAAIVREDSLAKFAKECHFDNYI-----------------LLGKGEEASGG 125
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPV---TELYEV 242
+L D+ E+ +GA+++D + K ++++ P I +H + T+L EV
Sbjct: 126 RTRASLLCDLFEAFLGALYLD--QKVGAAKKFIEDVIFPKIDAGAF-SHELDHKTQLQEV 182
Query: 243 CQ-KNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
Q K + +++ L KE H +++ +L+G G KK +A AA+ AL +
Sbjct: 183 LQRKGDVSIEY-RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKK-LAEQDAAERALKS 240
Query: 295 I 295
I
Sbjct: 241 I 241
>gi|291000766|ref|XP_002682950.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
gi|284096578|gb|EFC50206.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
Length = 1386
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 18/182 (9%)
Query: 45 QDLFVNEKAGDESESESLP-NANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERL 103
+D+F+N+K + E L + L E+ L ++F N LL EAF PS F+YERL
Sbjct: 1085 EDIFMNQKLLLRNHFEKLKIDLYKLTEK--LNFQFENSGLLLEAFIHPSY-NGVFNYERL 1141
Query: 104 EYVGDSVLNLLLTK---EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
E++GDSVL L++T E+F + G +++LR V + A + I+ L Y+ +
Sbjct: 1142 EFLGDSVLGLIVTSKIFEKFHKNSSFSLGMMSKLREKIVMNKNFANLCIENQLQNYIIFS 1201
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
+ +Q+ +HS + K+L+D+ ES GA+F+D + +D V ++ E
Sbjct: 1202 GNHIAQQV-----------VHSKDDGEYVKMLSDVFESLAGALFVDSHYDLDTVKLIYDE 1250
Query: 221 LL 222
L
Sbjct: 1251 FL 1252
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 83 LLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTE 142
LLEEA T + +YE+LE+ GDS+L +++K + +P GSL++L+ V+
Sbjct: 935 LLEEALTAKR-SQVGANYEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVSNY 993
Query: 143 KLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP-KVLADIVESTIG 201
LA VA L ++ +PL Q+ + ++A KVLAD+VES IG
Sbjct: 994 FLASVARNTRLPLFII-TEPLNTSQLVQNIGGFKSNKFADETNIEAEYKVLADVVESIIG 1052
Query: 202 AVF 204
+
Sbjct: 1053 FCY 1055
>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 248
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 19/127 (14%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE++GDSVL L++T F +P+LP G L +LR+A VN LA VA LG+ Y+R
Sbjct: 46 ERLEFLGDSVLGLVVTDTLFRKHPDLPEGQLAKLRAAVVNMRALADVARGLGVGAYIR-- 103
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
L G D +LAD +E+ IGAV++D +D+ +
Sbjct: 104 ---------------LGRGEEGTGGRDKSSILADTLEAVIGAVYLD--RGLDVASEFVHR 146
Query: 221 LLKPMIS 227
L P+I+
Sbjct: 147 LFDPLIA 153
>gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
gi|424054689|ref|ZP_17792213.1| ribonuclease 3 [Acinetobacter nosocomialis Ab22222]
gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
gi|407439438|gb|EKF45963.1| ribonuclease 3 [Acinetobacter nosocomialis Ab22222]
Length = 230
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F LL+ A T S ++ +YERLE++GDS+L +++ + YP+ G LTR
Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKY-NYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTR 75
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V E L ++A L L + L IL +G +LA
Sbjct: 76 MRATLVRQEALGKIATDLQLSRCL-----------------ILSTGELKSGGHHRESILA 118
Query: 194 DIVESTIGAVFIDC---NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D VE+ IGA+++D N DIV K + L + + LK P + L E Q K +
Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYVPYLDHIEPTDQLKD-PKSRLQEYLQARKKPL 177
Query: 251 ---KFVDLWKESTAFHIFIE------DQLLGRGAYAPKKEIAHNRAAKDALNNIER 297
+ VD+ ++ H +E ++ G G+ + A AA + L +E+
Sbjct: 178 PVYEVVDIQGDAPHQHFKVECLVDGLPKIYGEGS---SRRFAEQAAAAEILKLLEQ 230
>gi|297539125|ref|YP_003674894.1| ribonuclease III [Methylotenera versatilis 301]
gi|297258472|gb|ADI30317.1| ribonuclease III [Methylotenera versatilis 301]
Length = 231
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 22/179 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
L Y+F +KNLL +A T S + + ERLEY+GD LN ++ + + +P+L G L+R
Sbjct: 10 LSYKFVDKNLLTQALTHRSYASQ--NNERLEYLGDGALNFIIANQLYQRFPSLAEGDLSR 67
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V ++ +A L + L+ + L S G P +LA
Sbjct: 68 LRAQLVKEATISEIAFSLDIGDALKLGEG----------------ELKSAGW-RRPSILA 110
Query: 194 DIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKV 250
D +E+ IGAV++D ++ +V +++ E L I P+ + P + L E+ Q K+ V
Sbjct: 111 DALEAIIGAVYLDGGFFAAEALVLELYIEKL-STIDPKIIDKDPKSLLQEMLQGKKIAV 168
>gi|226951500|ref|ZP_03821964.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
gi|294651022|ref|ZP_06728362.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
gi|226837793|gb|EEH70176.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
gi|292823123|gb|EFF81986.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
Length = 231
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 26/216 (12%)
Query: 59 SESLPNA-NNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
+++LPN N+ + +GY+F +LL+ A T S + +YERLE++GDS+L +++
Sbjct: 2 TKNLPNKLNDTRLQARIGYQFQQIDLLKLALTHRSVSHKH-NYERLEFLGDSLLGMIIAN 60
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILD 177
+ YP G LTR+R+ V E L ++A L L + L IL
Sbjct: 61 YLYHTYPTENEGRLTRMRATLVRQEALGKIANDLQLSRSL-----------------ILS 103
Query: 178 YPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTH 234
+G +LAD VE+ IGA++ID N ++++ + + +P I P
Sbjct: 104 TGELKSGGHHRESILADTVEAIIGAIYIDSN-DLNLLQGIVLKWYEPYFDHIEPTDQLKD 162
Query: 235 PVTELYEVCQKNKLKV---KFVDLWKESTAFHIFIE 267
P + L E Q K + + VD+ ++ H +E
Sbjct: 163 PKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVE 198
>gi|434381810|ref|YP_006703593.1| ribonuclease III [Brachyspira pilosicoli WesB]
gi|404430459|emb|CCG56505.1| ribonuclease III [Brachyspira pilosicoli WesB]
Length = 229
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 36/245 (14%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYP 124
LD E++L Y F NKN L EA T + + +RLE++GDSVL+L++++ + Y
Sbjct: 7 LDCEKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYN 66
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
N+ G L+++++ V+ LA ++ KL L +L +L ++G
Sbjct: 67 NVKEGKLSKIKAYLVSQNTLASISRKLKLGDFL-----------------LLGKGEEASG 109
Query: 185 LVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+ +L D+ E+ IGA+++D N ++ + V +V+K++L + K + T L E+
Sbjct: 110 GRERDNMLEDLFEAIIGAIYLDSNLENTKNFVMRVYKDILNKLDINNFDKDYK-TILQEI 168
Query: 243 CQKNKLKVKFVDLWK-------ESTAF--HIFIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
QK K K +K ++ F ++++ + G KKE N AAK AL
Sbjct: 169 VQK---KYKITPTYKSYEYNENDNIMFKVEVYVKTKKYASGVGKSKKEAEIN-AAKKALE 224
Query: 294 NIERL 298
IE +
Sbjct: 225 EIENI 229
>gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
Length = 224
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 81/163 (49%), Gaps = 27/163 (16%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY+F LL+ A T R +S ERLE++GDSVLN + K + YP+LP G
Sbjct: 10 LGYQFLQPQLLQRALT-----HRSYSAAHNERLEFLGDSVLNCAIAKYLYDTYPDLPEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLRS VN + LA +A +L L + L LL E R+ S G P
Sbjct: 65 LSRLRSNLVNQQTLAILAQQLNLGEQL-----LLGEGERK-----------SAGF-RRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT 233
+LAD +E+ GAV +D + KV L P I LKT
Sbjct: 108 ILADALEALFGAVLLD--AGFMAAEKVVLGLYVPFIVQTDLKT 148
>gi|407700693|ref|YP_006825480.1| ribonuclease III [Alteromonas macleodii str. 'Black Sea 11']
gi|407249840|gb|AFT79025.1| ribonuclease III [Alteromonas macleodii str. 'Black Sea 11']
Length = 228
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY F N++LLE+A T S ++ ERLE++GD++L +++ + F +P +P G LTR
Sbjct: 14 IGYTFTNESLLEQALTHRSAAKQH--NERLEFLGDAILGMIVGETLFKRFPTVPEGKLTR 71
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+RS V + LA +A + + + L L+ +G +LA
Sbjct: 72 MRSTLVKGDTLAELAKEASVGELLNLGPGELK-----------------SGGHRRSSILA 114
Query: 194 DIVESTIGAVFIDCN-----SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
D VE+ +GA+++D ID +W+ L P P+ KT L E Q K
Sbjct: 115 DAVEAILGAIYLDSGMDEVRGVIDRLWETRINKLDPNAHPKDSKTR----LQEFLQGRK 169
>gi|306819680|ref|ZP_07453341.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
gi|304552246|gb|EFM40176.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
Length = 233
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 41/239 (17%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSY--ERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +GY+F NKN L+ A T S E + ERLE++GDSVL L+++ F +L
Sbjct: 13 ENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIVSNYIFAYKSSLK 72
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT++RS V + L +A KL + +Y++ K E+I +G
Sbjct: 73 EGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGKG---EKI--------------SGGAK 115
Query: 188 APKVLADIVESTIGAVFIDCNSS------IDIVWKVFKELL--------KPMISPETLKT 233
+LAD VE+ I A+++D + +D + K L K + E K
Sbjct: 116 RASILADAVEAMIAAIYLDSDFDNVSKYVLDWLGDTIKNALDNKKNDDYKSKLQEEVQKV 175
Query: 234 HPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
T YE+ + +K D + T ++ +++L+G G KKE A AAKDAL
Sbjct: 176 RGRTLKYEL-----IAMKGPDHERTFT-IGVYCDNKLIGTGKGHSKKE-AEQLAAKDAL 227
>gi|415924421|ref|ZP_11554856.1| Ribonuclease III, partial [Herbaspirillum frisingense GSF30]
gi|407760385|gb|EKF69694.1| Ribonuclease III, partial [Herbaspirillum frisingense GSF30]
Length = 220
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LG+ F + +LL++A T S ERLE++GDSVLN ++ F Y + G
Sbjct: 7 QQRLGHTFKDASLLQQALTHRS--HSALHNERLEFLGDSVLNCVVASLLFERYDKIDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V + L +A +L L ++LR + L+ +G P
Sbjct: 65 LSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELK-----------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPM---ISPETLKTHPVTELYEVCQKNK 247
+LAD +E+ GA+F+D S + V + L P+ + P TL T L E Q K
Sbjct: 108 ILADTLEALFGAIFLD--SGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKK 165
Query: 248 LKVKFVDLWKESTAFH 263
+ + ++ A H
Sbjct: 166 IPLPQYNVIATHGAAH 181
>gi|295105981|emb|CBL03524.1| RNAse III [Gordonibacter pamelaeae 7-10-1-b]
Length = 281
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 31/236 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
+EIL YRF++++LL A T PS E +SYERLE++GDS+L ++ F + +L
Sbjct: 15 QEILDYRFDSEHLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVAAIAFHRFHDLD 74
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LTR++ A V+ L+ VA +LG + R LHS
Sbjct: 75 EGGLTRIKVALVSGASLSDVADRLGFADVIVFGSSETGTGKR---------GLHS----- 120
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLK--THPVTELYEVCQK 245
L ++ E+ + A+++D I + + L P +S + + +P + L E Q+
Sbjct: 121 ---ALENVYEAVVAALYLDGG--IGAAQEFVERTLIPRMSLDMAREPENPKSALQEKLQE 175
Query: 246 NKL--KVKFVDLWK----ESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+ + K V+ + +F Q L RG KKE A ++AAK L +
Sbjct: 176 DGITPTYKLVETQGPPHDRTFVAQVFAGTQGLARGTGRTKKE-AESQAAKSTLARL 230
>gi|339009341|ref|ZP_08641913.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
gi|338773819|gb|EGP33350.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
Length = 239
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 36/241 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G F +++L+ +AFT S +R ERLE++GD+VL L +++ + ++P
Sbjct: 17 QEKIGIVFTDESLMRQAFTHSSYVNEQRGKRISDNERLEFLGDAVLELTVSQFLYKMFPK 76
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE-AILDYPLHSNG 184
+ G +T+LR+A V L + A ++ +F E +L G
Sbjct: 77 MSEGEMTKLRAAIVCEPSLVKFA------------------ELLQFGELVLLGKGEELTG 118
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE--TLKTHPVTELYEV 242
P +LAD+ E+ +GA+++D +D V++ ++ + P I T T ++L E+
Sbjct: 119 GRQRPALLADVFEAFVGALYLD--QGLDAVFQFLEKYVYPRIDKGEFTQVTDFKSQLQEL 176
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q++ L + +E H + + LG G+ KKE A RAA AL I
Sbjct: 177 VQQDSLGEIIYRILQERGPAHNREFVSEVILNGNQLGVGSGRSKKE-AEQRAAALALMKI 235
Query: 296 E 296
E
Sbjct: 236 E 236
>gi|296089026|emb|CBI38729.3| unnamed protein product [Vitis vinifera]
Length = 227
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 195 IVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKFVD 254
I ES GA+F+D +VWKVF+ LL PM++PETL HPV EL E CQ+ +++
Sbjct: 23 ICESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKA 82
Query: 255 LWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+ A +FI+ +G A P+K++A AA++AL
Sbjct: 83 TRSGNLATVEVFIDGVQIGI-AQNPQKKMAQKLAARNAL 120
>gi|320161647|ref|YP_004174872.1| ribonuclease III [Anaerolinea thermophila UNI-1]
gi|319995501|dbj|BAJ64272.1| ribonuclease III [Anaerolinea thermophila UNI-1]
Length = 237
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 35/222 (15%)
Query: 74 LGYRFNNKNLLEEAFTDPSC----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
LG F + LL A T S PE ERLE++GD+VL+ ++ + YP++P G
Sbjct: 17 LGLSFKSFFLLSRALTHRSYLNEHPEAIEDNERLEFLGDAVLDFVVGAWLYNRYPDMPEG 76
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LTR+RS V+TE+L+ A K+ L + LR K E Q G D P
Sbjct: 77 DLTRMRSVLVSTEQLSEFARKVDLGRALRLGKG--ETQA---------------GGRDRP 119
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP----MISPETLKTHPVTELYEVCQK 245
+L D E+ IGA+++D S I+ V + + +L+ +++ +T++ P + L E Q
Sbjct: 120 ALLCDAFEAVIGAIYLD--SGIEGVRRFIEPMLEKAADEILARQTIE-DPKSMLQEWAQG 176
Query: 246 NKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
+ + S H + I Q+ G G + K+
Sbjct: 177 QGFQAPRYIVRSSSGPEHSKQFEVDVLINGQIYGSGIGSSKQ 218
>gi|84498322|ref|ZP_00997119.1| ribonuclease III [Janibacter sp. HTCC2649]
gi|84381822|gb|EAP97705.1| ribonuclease III [Janibacter sp. HTCC2649]
Length = 249
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 71/146 (48%), Gaps = 22/146 (15%)
Query: 101 ERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
ERLE++GDSVL L++T + +P+L G L +LR+A VN LA V LGL YL
Sbjct: 49 ERLEFLGDSVLGLVVTDSLYVTHPDLTEGQLAKLRAAVVNMRALAAVGRTLGLGDYLHLG 108
Query: 161 KPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKE 220
+ EE S G D +LAD VE+ IGA + C++ + +
Sbjct: 109 RG--EE---------------STGGRDKDSILADTVEAVIGATY--CSAGLVAAGDLVHH 149
Query: 221 LLKP-MISPETLKTHP--VTELYEVC 243
LL P M S TL T L E+C
Sbjct: 150 LLDPLMASSATLGAGLDWKTSLQEIC 175
>gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|189043287|sp|A3MZQ9.1|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
Length = 223
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
L Y+F N + L +A T S + + ERLE++GDS+LN + K F +P G L+R
Sbjct: 10 LSYQFTNLDYLLQALTHRSAGAK--NNERLEFLGDSILNFAIGKALFEKFPKANEGELSR 67
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
+R+ V + LA +A + GL +Y+R L+ +G +L+
Sbjct: 68 MRATLVREQTLAILARQFGLGEYMRLGAGELK-----------------SGGYRRESILS 110
Query: 194 DIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
D VE+ I A+++D + +I+ V +++LL M P + P T L E Q KL
Sbjct: 111 DCVEAIIAAIYLDAGMDKAIEQVHLWYQDLLAEM-KPGDAQKDPKTRLQEFLQGRKL 166
>gi|430750346|ref|YP_007213254.1| ribonuclease III [Thermobacillus composti KWC4]
gi|430734311|gb|AGA58256.1| ribonuclease III [Thermobacillus composti KWC4]
Length = 233
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 24/161 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPN 125
++ LG RF LL++AFT S S ERLE++GD+V+ LL+++ + ++P
Sbjct: 10 QQQLGIRFKRTGLLKQAFTHTSYVNEHKSGNAQDNERLEFLGDAVMQLLVSEHLYLMHPR 69
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
P G LTR+R++ V A+ A L L +Y+ + EEQ+ G
Sbjct: 70 RPEGELTRMRASIVCEPSFAKFAETLDLGRYVLLGRG--EEQL---------------GG 112
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
P +LAD+ ES IGA+++D S ++ V + K + P+I
Sbjct: 113 RTRPALLADLFESFIGALYLD--SGLEAVREFLKRHIFPLI 151
>gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646]
gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646]
Length = 241
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 35/237 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-ERFFSYE----RLEYVGDSVLNLLLTKEQFFLYPN 125
++ILG F++ N+L +AF PS E+ S++ RLE++GD+VL L++++ + YPN
Sbjct: 15 QQILGVDFDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIYDKYPN 74
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G LT+LR+ V E LA ++ +L L +L K E+I G
Sbjct: 75 YTEGELTKLRALLVCEESLAYLSRELTLGDFLIMGKG---EEI--------------TGG 117
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-PETLKTHP--VTELYEV 242
+ +LAD E+ IGA+++D + +E KP++ E K P T L E+
Sbjct: 118 REKASILADTFEALIGAMYLD--KGFGAITGFVREKFKPVMERAEKGKLFPDYKTALQEM 175
Query: 243 CQKNKLKVKFVDLWKESTAFH---IFIE----DQLLGRGAYAPKKEIAHNRAAKDAL 292
Q+ ++ KE H F+E +++LG G KKE N AAK A+
Sbjct: 176 LQRISPDRITYNVIKEEGPDHNKTFFVEVVWKNKILGSGCGKSKKEAEQN-AAKAAI 231
>gi|421872840|ref|ZP_16304457.1| ribonuclease III [Brevibacillus laterosporus GI-9]
gi|372458255|emb|CCF14006.1| ribonuclease III [Brevibacillus laterosporus GI-9]
Length = 229
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 36/241 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G F +++L+ +AFT S +R ERLE++GD+VL L +++ + ++P
Sbjct: 7 QEKIGIVFTDESLMRQAFTHSSYVNEQRGKRISDNERLEFLGDAVLELTVSQFLYKMFPK 66
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE-AILDYPLHSNG 184
+ G +T+LR+A V L + A ++ +F E +L G
Sbjct: 67 MSEGEMTKLRAAIVCEPSLVKFA------------------ELLQFGELVLLGKGEELTG 108
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE--TLKTHPVTELYEV 242
P +LAD+ E+ +GA+++D +D V++ ++ + P I T T ++L E+
Sbjct: 109 GRQRPALLADVFEAFVGALYLD--QGLDAVFQFLEKYVYPRIDKGEFTQVTDFKSQLQEL 166
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q++ L + +E H + + LG G+ KKE A RAA AL I
Sbjct: 167 VQQDSLGEIIYRILQERGPAHNREFVSEVILNGNQLGVGSGRSKKE-AEQRAAALALMKI 225
Query: 296 E 296
E
Sbjct: 226 E 226
>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
Length = 229
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 36/245 (14%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYP 124
LD E++L Y F NKN L EA T + + +RLE++GDSVL+L++++ + Y
Sbjct: 7 LDCEKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYN 66
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
N+ G L+++++ V+ LA ++ KL L +L +L ++G
Sbjct: 67 NVKEGKLSKIKAYLVSQNTLANISRKLKLGDFL-----------------LLGKGEEASG 109
Query: 185 LVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+ +L D+ E+ IGA+++D N ++ + V +V+K++L + K + T L E+
Sbjct: 110 GRERDNMLEDLFEAIIGAIYLDSNLENTKNFVMRVYKDILNKLDINNFDKDYK-TILQEI 168
Query: 243 CQKNKLKVKFVDLWK-------ESTAF--HIFIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
QK K K +K ++ F ++++ + G KKE A AAK AL
Sbjct: 169 VQK---KYKITPTYKSYEYNENDNIMFKVEVYVKTKKYASGIGKSKKE-AEINAAKKALE 224
Query: 294 NIERL 298
IE +
Sbjct: 225 EIENI 229
>gi|262196731|ref|YP_003267940.1| ribonuclease III [Haliangium ochraceum DSM 14365]
gi|262080078|gb|ACY16047.1| ribonuclease III [Haliangium ochraceum DSM 14365]
Length = 282
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 39/224 (17%)
Query: 53 AGDESESESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPS--------CPERFFSYERL 103
AG + SE+ +A +L E+ILG+RF + LLE A T S C + ERL
Sbjct: 30 AGRRAASEAGKHAIDLSGLEDILGHRFRKRALLEAAVTHRSFANEQAVPCTDN----ERL 85
Query: 104 EYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPL 163
E++GD+VL+L + ++P+L G L+ R+ V+ + L+ +A LGL YLR K
Sbjct: 86 EFLGDAVLDLAVGHMLMDVHPDLSEGRLSVTRAQIVSEKGLSEIAYGLGLGTYLRLGK-- 143
Query: 164 LEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK 223
+G + +LAD +E+ I AV++D D WK+ L
Sbjct: 144 ---------------GERRSGGQNKASILADSLEAVIAAVYLD--GGFDAAWKLVARLF- 185
Query: 224 PMISPETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIE 267
TL+ ++ Y+ K +L+ K + A+ + E
Sbjct: 186 ----ARTLEEVEISGFYD--HKTRLQELAQARLKSTPAYRVVDE 223
>gi|94263438|ref|ZP_01287251.1| Ribonuclease III [delta proteobacterium MLMS-1]
gi|93456168|gb|EAT06307.1| Ribonuclease III [delta proteobacterium MLMS-1]
Length = 233
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPS----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+GYRF +LLE A S + S ERLE++GD+VL L + + +P +P G
Sbjct: 15 MGYRFKRTSLLELALVHSSRAAEAGKGVSSNERLEFLGDAVLGLAVAALLYEAHPTMPEG 74
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
L+R R+A VN E LA +A +L L +++R + EE + G D P
Sbjct: 75 DLSRHRAALVNEEHLAGMARQLALGEFIRLGRG--EE---------------ATGGRDKP 117
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETLKTHPVTELYEVCQKNK 247
+LA E+ +GAV++D + + + L P ++ P + + L EV Q+
Sbjct: 118 SILAATFEALVGAVYLD--GGYEPALALLRPLFAPWVANPPLPRISDSKSALQEVLQQRH 175
Query: 248 LKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
+ L E H + ++ ++LGRG KK
Sbjct: 176 GEGPVYYLENEEGPDHDKRFTVRVELQGKVLGRGRGRGKK 215
>gi|339448388|ref|ZP_08651944.1| ribonuclease III [Lactobacillus fructivorans KCTC 3543]
Length = 235
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 111/246 (45%), Gaps = 48/246 (19%)
Query: 71 EEILGYRFNNKNLLEEAFTD-------PSCPERFFSYERLEYVGDSVLNLLLTKEQFFLY 123
E+ +FN+++LL+EA T P +F YERLE++GD+V L+++ F +
Sbjct: 10 EDKFNIKFNDESLLDEAMTQASYVNEHPGQGLKF--YERLEFLGDAVYQLVVSDYIFRRF 67
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
P LP G LTRLR+A VN +R A + KY+R K + R+
Sbjct: 68 PELPQGRLTRLRAAMVNEHSFSRFARECHFDKYIRLGKGEEKANARQ------------- 114
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISP-------ETLKTHPV 236
+L DI ES IGAV++D + K + +I P + H
Sbjct: 115 ----RDSLLCDIFESFIGAVYLDQGMA------TVKHFCEIVIFPKLDEGWFDEFFDHK- 163
Query: 237 TELYEVCQKN---KLKVKFV--DLWKESTAFHIF--IEDQLLGRGAYAPKKEIAHNRAAK 289
TEL EV Q++ L + V D F + I + +G G KK+ A +AAK
Sbjct: 164 TELQEVVQEDGPVDLDYELVSEDGPDNDRKFKVAVKINGKEMGVGLGHSKKD-AEQKAAK 222
Query: 290 DALNNI 295
ALN +
Sbjct: 223 KALNEL 228
>gi|385810564|ref|YP_005846960.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
gi|383802612|gb|AFH49692.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
Length = 258
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 32/240 (13%)
Query: 69 DEEEILGYRFNNKNLLEEAFTDPSCPERF----FSYERLEYVGDSVLNLLLTKEQFFLYP 124
D E+I+GY +++ +A S E S ERLE++GD+VL+L+ + F LYP
Sbjct: 34 DLEKIIGYPIKDQSHYIQALIHRSFLEELDEDDASNERLEFLGDAVLSLITAEYLFHLYP 93
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
+ G LT++R+ VN LA A ++GL K+L N+ L FS
Sbjct: 94 DKDEGFLTKVRAKIVNRNSLADSAEEIGLVKFLLINQNLSN----TFSRG---------- 139
Query: 185 LVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI--SPETLKTHPVTELYEV 242
A VL+D E+ +GA+++D V+ + K L+ P++ + + ++L E
Sbjct: 140 ---AKTVLSDAFEALVGALYLDQGLDAGRVF-IRKVLIDPIVEAGEHLVDENYKSQLLEY 195
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q NKL++ + KE H + + D+++G G KK N AA+ A+ I
Sbjct: 196 AQANKLELPNYKVIKEEGPQHERIFTVQVSVGDKIIGIGKGKNKKSAEQN-AAQKAMEKI 254
>gi|344940862|ref|ZP_08780150.1| Ribonuclease 3 [Methylobacter tundripaludum SV96]
gi|344262054|gb|EGW22325.1| Ribonuclease 3 [Methylobacter tundripaludum SV96]
Length = 227
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 22/192 (11%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LG +FNN L A T S + ERLE++GDS+L ++ ++ F L+P G L+R
Sbjct: 12 LGLKFNNPQLFTMALTHRSASSN--NNERLEFLGDSILGFVIAQKLFELFPGACEGVLSR 69
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR++ VN LA +A K L YL +L +G +L+
Sbjct: 70 LRASLVNQGSLAELARKHQLGDYL-----------------LLGSGELKSGGFRRDSILS 112
Query: 194 DIVESTIGAVFIDCNSSIDIVW--KVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVK 251
D VE+ IGA++ D W ++F E LK +S + + P T+L E+ Q K+++
Sbjct: 113 DAVEAIIGALYNDQGMDASQQWILQLFAEKLKS-LSLDNWQKDPKTQLQELMQSRKMELP 171
Query: 252 FVDLWKESTAFH 263
L S H
Sbjct: 172 DYTLMTMSGLAH 183
>gi|187778952|ref|ZP_02995425.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC
15579]
gi|187772577|gb|EDU36379.1| ribonuclease III [Clostridium sporogenes ATCC 15579]
Length = 237
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 78 FNNKNLLEEAFTDPS---CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRL 134
F ++ LL+ A T S + YERLE++GDSVL L++++ + Y + G LTR
Sbjct: 22 FKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 81
Query: 135 RSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLAD 194
R+ V L +A + L YL+ +K E++ G + +LAD
Sbjct: 82 RAIIVCENSLYEMAKRWDLGFYLQMSKG---EEL--------------TGGRERVSILAD 124
Query: 195 IVESTIGAVFID--CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKLKVKF 252
VES I A+++D + + + V K FKE+++ + E + + T V Q N L + +
Sbjct: 125 CVESIIAAIYLDKGLDEAREFVMKNFKEIIEKAMRDEIILDYKTTLQEIVQQNNDLTINY 184
Query: 253 VDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
+L K+ H + I++++ G G KKE N AAK+AL N+
Sbjct: 185 -ELLKQEGPPHRRKFFTNVTIDNEVRGTGIGYSKKEAEQN-AAKEALKNL 232
>gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17]
gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17]
Length = 229
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 105/234 (44%), Gaps = 35/234 (14%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
+GY+F ++ L A T S + + ERLE++GDS++N+++ + F +P G L+R
Sbjct: 14 IGYQFKSQERLLLALTHRSFGNQ--NNERLEFLGDSIVNMVIAEHLFRRFPKAREGQLSR 71
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V LA + + L YLR L+ +G +LA
Sbjct: 72 LRARMVKGVTLAEIGREFDLGSYLRLGSGELK-----------------SGGFRRESILA 114
Query: 194 DIVESTIGAVFID-----CNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
D VES IGA+++D C + I + W F L+ + +T K P T L E Q +
Sbjct: 115 DAVESVIGAIYLDSDFVTCQAQI-LRW--FDLRLQNLDLQDTQK-DPKTRLQEYLQSRQF 170
Query: 249 -----KVKFVDLWKESTAFHIFIEDQLLGRGAYAP--KKEIAHNRAAKDALNNI 295
V VD + FHI LGR + IA +AA++AL +
Sbjct: 171 PLPIYDVLSVDGEAHNQTFHISCALSSLGRKTTGSGNSRRIAEQQAARNALKEL 224
>gi|404482777|ref|ZP_11018002.1| ribonuclease III [Clostridiales bacterium OBRC5-5]
gi|404343867|gb|EJZ70226.1| ribonuclease III [Clostridiales bacterium OBRC5-5]
Length = 232
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 23/147 (15%)
Query: 66 NNLDE-EEILGYRFNNKNLLEEAFTDPSCPE-----RFFSYERLEYVGDSVLNLLLTKEQ 119
NNL+E +E+LGY + NK LL +A T S + S ERLE++GD+VL L+ ++
Sbjct: 3 NNLNELQELLGYEYKNKELLSQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSSEFF 62
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
+ +YP+ P G LT++R+ V LA A + L K+L+ K EE
Sbjct: 63 YGVYPDKPEGELTKIRAGFVCEAALADCAKNIKLSKFLKLGKG--EE------------- 107
Query: 180 LHSNGLVDAPKVLADIVESTIGAVFID 206
H+ G + P +++D E+ IG++++D
Sbjct: 108 -HTGGRMR-PSIISDAFEALIGSIYLD 132
>gi|402309780|ref|ZP_10828755.1| ribonuclease III [Eubacterium sp. AS15]
gi|400370906|gb|EJP23887.1| ribonuclease III [Eubacterium sp. AS15]
Length = 233
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 108/236 (45%), Gaps = 35/236 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFFSY--ERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +GY+F NKN L+ A T S E + ERLE++GDSVL L+++ F +L
Sbjct: 13 ENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIVSNYIFAYKSSLK 72
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
G LT++RS V + L +A KL + +Y++ K E+I +G
Sbjct: 73 EGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGKG---EKI--------------SGGAK 115
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
+LAD VE+ I A+++D S D V K + L I L + Q+
Sbjct: 116 RASILADAVEAMIAAIYLD--SDFDNVSKYVLDWLGDTI-KNALDNKKNDDYKSKLQEEV 172
Query: 248 LKVKFVDLWKESTAFH-----------IFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
KV+ L E A ++ +++L+G G KKE A AAKDAL
Sbjct: 173 QKVRGRTLKYELIAMKGPDHERIFTIGVYCDNKLIGTGKGHSKKE-AEQLAAKDAL 227
>gi|20807916|ref|NP_623087.1| ribonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|22654052|sp|Q8R9W3.1|RNC_THETN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|20516484|gb|AAM24691.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4]
Length = 228
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 38/241 (15%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERF----FSYERLEYVGDSVLNLLLTKEQFFLYPN- 125
E+ + Y F +K LL EA T S S ERLE++GDSVL+L++++ +LY N
Sbjct: 6 EQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISE---YLYKNR 62
Query: 126 --LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
L GSL++ R+ V LAR A K+ L +LR K E+I +
Sbjct: 63 KDLEEGSLSKYRAEIVCEPSLARCARKIELGSFLRMGKG---EEI--------------S 105
Query: 184 GLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
G D +LAD +E+ + AV++D + ++ +FKE++ ++ + + T L E
Sbjct: 106 GGRDRDSILADAMEALLAAVYLDGGLEAVRRVILDLFKEIIDEVLKGIIYRDYK-TRLQE 164
Query: 242 VCQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNN 294
V Q ++ +L +E H + I D +LG G KKE + AA +AL+
Sbjct: 165 VVQSMEVGKITYELVEEIGPDHNKTFVTQVKIGDVVLGIGQGKSKKE-SEQAAAMEALSK 223
Query: 295 I 295
+
Sbjct: 224 L 224
>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
Length = 236
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 40/237 (16%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCP-ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+ I+GY F LLE+A T SC E FS ERLE++GD+VL ++++ + P+ G
Sbjct: 17 QNIIGYSFKKMLLLEKALTHTSCRVENNFSNERLEFLGDAVLGMIISDYLYKTMPHYSEG 76
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT ++S V+ LA+V ++ GL ++L + L + + +P
Sbjct: 77 ELTNVKSVVVSQSTLAKVGMEAGLKEFLLVGRGLNDRDL---------FP---------K 118
Query: 190 KVLADIVESTIGAVFIDCN-------------SSIDIVWK-VFKELLKPMISPETLKTHP 235
+LA++ E+ I A++ID ID+V K K+ K ++ + K +
Sbjct: 119 SLLANVFEALIAAIYIDGGIEAASEFTLRYLKKEIDLVCKNQHKKNYKSILQQYSQKEYG 178
Query: 236 VTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDAL 292
+T Y + Q + +S + I+ GRG KKE A AAK+AL
Sbjct: 179 ITPTYRLLQ------QIGPDHGKSFEIVVSIKGSEYGRGWGKSKKE-AEQSAAKEAL 228
>gi|251791907|ref|YP_003006627.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
gi|422336932|ref|ZP_16417904.1| ribonuclease 3 [Aggregatibacter aphrophilus F0387]
gi|247533294|gb|ACS96540.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
gi|353345942|gb|EHB90231.1| ribonuclease 3 [Aggregatibacter aphrophilus F0387]
Length = 226
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 23/189 (12%)
Query: 65 ANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLY 123
+NLD + + Y+F + LL++A T S + ERLE++GD++LNL + + F +
Sbjct: 3 TDNLDRLQRKIDYQFQDTGLLKQALTHRSAGHKH--NERLEFLGDAILNLTIAEALFHQF 60
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
P G L+R+R+ V LA +A L YL + L+ +
Sbjct: 61 PKCNEGELSRMRATLVREPTLAILARDFQLGDYLSLGQGELK-----------------S 103
Query: 184 GLVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYE 241
G +LAD VE+ IGA+ +D N ++ +IV + ++ LLK I P + T L E
Sbjct: 104 GGFRRESILADCVEAIIGAISLDSNLTNATEIVTRWYQPLLKD-IQPGDNQKDAKTRLQE 162
Query: 242 VCQKNKLKV 250
Q N+L V
Sbjct: 163 YLQGNRLPV 171
>gi|431806995|ref|YP_007233893.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
gi|430780354|gb|AGA65638.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
Length = 229
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 36/245 (14%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFFSY---ERLEYVGDSVLNLLLTKEQFFLYP 124
LD E++L Y F NKN L EA T + + +RLE++GDSVL+L++++ + Y
Sbjct: 7 LDCEKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYN 66
Query: 125 NLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG 184
N+ G L+++++ V+ LA ++ KL L +L +L ++G
Sbjct: 67 NVKEGKLSKIKAYLVSQNTLASISRKLKLGDFL-----------------LLGKGEEASG 109
Query: 185 LVDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+ +L D+ E+ IGA+++D N ++ + V +V+K++L + K + T L E+
Sbjct: 110 GRERDNMLEDLFEAIIGAIYLDSNLENTKNFVMRVYKDILNKLDINNFDKDYK-TILQEI 168
Query: 243 CQKNKLKVKFVDLWK-------ESTAF--HIFIEDQLLGRGAYAPKKEIAHNRAAKDALN 293
QK K K +K ++ F ++++ + G KKE N AAK AL
Sbjct: 169 VQK---KYKITPTYKSYEYNENDNIMFKVEVYVKTKKYASGIGKSKKEAEIN-AAKKALE 224
Query: 294 NIERL 298
IE +
Sbjct: 225 EIENI 229
>gi|383649281|ref|ZP_09959687.1| ribonuclease III [Streptomyces chartreusis NRRL 12338]
Length = 269
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 59 SESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYE--------RLEYVGDSV 110
S S P N +L R K LE A + R ++YE RLE++GDSV
Sbjct: 2 SGSAPADNQASSHTLLEGRLGYK--LESALLVRALTHRSYAYENGGLPTNERLEFLGDSV 59
Query: 111 LNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIRE 170
L L++T + +P+LP G L +LR+A VN+ LA V L L ++R
Sbjct: 60 LGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIR------------ 107
Query: 171 FSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFID--CNSSIDIVWKVFKELLK 223
L G D +LAD +E+ IGAV++D +S+ ++V ++F L++
Sbjct: 108 -----LGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAAELVHRLFDPLIE 157
>gi|292670166|ref|ZP_06603592.1| ribonuclease III [Selenomonas noxia ATCC 43541]
gi|292648118|gb|EFF66090.1| ribonuclease III [Selenomonas noxia ATCC 43541]
Length = 238
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 41/225 (18%)
Query: 74 LGYRFNNKNLLEEAFTDPS----CPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
+G FN+ LL+EA T PS + ERLE++GD+VL L + + +P+ G
Sbjct: 20 MGVSFNDFALLDEALTHPSYTNEAKDTIPHNERLEFLGDAVLELASSTYLYARFPDCSEG 79
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAP 189
LT++R++ V + LAR+A L L LR + EF NG D
Sbjct: 80 ELTKMRASLVQSNTLARLARALDLGSCLRLGRG-------EF----------HNGGADRQ 122
Query: 190 KVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET--LKTHPV-----TELYEV 242
L + E+ IGAV++D W+ KE + +S E +K V T L E
Sbjct: 123 NNLENAFEAVIGAVYLDAG------WETAKEYVARQLSREADHIKKAQVVHDYKTTLQEH 176
Query: 243 CQKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKK 280
Q+ + K +L ES H + +++Q +G GA KK
Sbjct: 177 IQQRRNKGIVYELIDESGPDHDKRFTMRVLVDNQPIGEGAGRSKK 221
>gi|410621832|ref|ZP_11332675.1| ribonuclease III [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410158589|dbj|GAC28049.1| ribonuclease III [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 224
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+++LGY F N+ LLE+AFT S + ERLE++GD+VL +++ + +P P G
Sbjct: 8 DKVLGYTFENEALLEQAFTHRSAAK--IHNERLEFLGDAVLGMVVADLLYLQFPEQPEGK 65
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
LTR+RS+ V + LA +A + L+ L +G
Sbjct: 66 LTRMRSSLVKGDTLALIAKEHDFGALLK-----------------LGSGEMKSGGHRRSS 108
Query: 191 VLADIVESTIGAVFIDC--NSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNKL 248
LAD+VE+ IGA+F++ +++ + + K+F ++ + +K + T+L E Q +L
Sbjct: 109 TLADVVEAVIGAIFLEAGIDAAKNTIIKLFASRIEKLDPYRQIKDNK-TQLQEFLQSRQL 167
>gi|372268566|ref|ZP_09504614.1| ribonuclease III [Alteromonas sp. S89]
Length = 226
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 28/218 (12%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY+F N+ LL+ A T S R + ERLE++GDS+L ++ F +P G ++R
Sbjct: 13 LGYQFTNEELLDLALTHRSHGSR--NNERLEFLGDSILGFTISAALFEKFPEGREGQMSR 70
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ V+ E LA+VA +L L LR + + + S G A +LA
Sbjct: 71 LRAQLVSGETLAKVARELELGDCLR----------------LGEGEMKSGGHRRA-SILA 113
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQKNKLKV- 250
D VE+ IGA+++D S ++ + P + +L+T P T L E Q +
Sbjct: 114 DAVEAIIGAMYLD--SGLEAARERVLAWFAPRLQSLSLETAKDPKTRLQEWLQARHKPLP 171
Query: 251 --KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNR 286
+ V++ E + +E ++ G AP K +A NR
Sbjct: 172 EYQVVEVAGEEHSQQFIVECRV--SGLAAPVKGVASNR 207
>gi|345009585|ref|YP_004811939.1| ribonuclease 3 [Streptomyces violaceusniger Tu 4113]
gi|344035934|gb|AEM81659.1| Ribonuclease 3 [Streptomyces violaceusniger Tu 4113]
Length = 278
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 35/183 (19%)
Query: 52 KAGDESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYE--------RL 103
K G+ S++++ + L E LGY+ LE A + R F+YE RL
Sbjct: 10 KRGEASQADTASSHTIL--EGRLGYQ------LESALLVRALTHRSFAYENGGLPTNERL 61
Query: 104 EYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPL 163
E++GDSVL L++T + ++P+LP G L +LR+A VN+ LA V L L ++R
Sbjct: 62 EFLGDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIR----- 116
Query: 164 LEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLK 223
L G D +LAD +E+ IGAV++D +D ++ L
Sbjct: 117 ------------LGRGEEGTGGRDKASILADTLEAVIGAVYLD--QGLDAAAELVHRLFD 162
Query: 224 PMI 226
P+I
Sbjct: 163 PLI 165
>gi|271969197|ref|YP_003343393.1| ribonuclease III [Streptosporangium roseum DSM 43021]
gi|270512372|gb|ACZ90650.1| Ribonuclease III [Streptosporangium roseum DSM 43021]
Length = 243
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 33/165 (20%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYE--------RLEYVGDSVLNLLLTKEQFFL 122
E +L R + +LE A T R ++YE RLE++GDSVL L++T +
Sbjct: 18 ERVLSVRLDVA-ILERAMT-----HRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRN 71
Query: 123 YPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
+P+LP G L +LR+A VN LA VA LGL ++LR L
Sbjct: 72 HPDLPEGQLAKLRAAVVNMRALADVARTLGLGRFLR-----------------LGRGEEG 114
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS 227
G D +LAD +E+ IG+V++ N +D ++V L P+I+
Sbjct: 115 TGGRDKSSILADTLEALIGSVYV--NRGLDEAFRVVHLLFDPLIT 157
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,783,415,246
Number of Sequences: 23463169
Number of extensions: 200999195
Number of successful extensions: 505217
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4240
Number of HSP's successfully gapped in prelim test: 515
Number of HSP's that attempted gapping in prelim test: 493993
Number of HSP's gapped (non-prelim): 6393
length of query: 303
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 162
effective length of database: 9,050,888,538
effective search space: 1466243943156
effective search space used: 1466243943156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)