BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041023
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q69KJ0|RTL3_ORYSJ Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica
GN=Os06g0358800 PE=2 SV=1
Length = 299
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 165/237 (69%), Gaps = 4/237 (1%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS--CPER-FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
E +LGY F +K L+EEA T S P R +YERLEY+GD+VL ++++E F Y L
Sbjct: 43 ESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQ 102
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD 187
PG LTRLR+ANV+ EKLARVA+ GLH +LRH P L+ QI +F E + YP+HSNGL+D
Sbjct: 103 PGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHSNGLLD 162
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQKNK 247
PKVL D+VES IGA++ D N + +IVW+VF++L P+IS ETL HPV+EL+E CQK +
Sbjct: 163 PPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQKTR 222
Query: 248 LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLLNEKR 303
VK V D W ++ + I+ +++GR YA KKEIA NRAAK AL+ ++ L + +
Sbjct: 223 RGVKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLKETLGQSQ 279
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica
GN=DCL1 PE=3 SV=1
Length = 1883
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 150/246 (60%), Gaps = 18/246 (7%)
Query: 60 ESLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTK 117
ES+ + N D + +LG F NK LL EA T S P S Y+RLE+VGD+VL+ L+T+
Sbjct: 1530 ESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITR 1589
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----SE 173
FF Y +LPPG LT LR+A VN E ARVA+K LH +LRH LE QIREF E
Sbjct: 1590 HLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQE 1649
Query: 174 AILDYPLHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
+L +S GL D APKVL DIVES GA+F+D +VWKVF+ LL PM++PETL
Sbjct: 1650 ELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETL 1709
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHI-----FIEDQLLGRGAYAPKKEIAHNR 286
HPV EL E CQ+ +++ K S A +I F++ +G A P+K++A
Sbjct: 1710 PMHPVRELQERCQQQAEGLEY----KASRAGNIATVEVFVDGVQIGV-AQNPQKKMAQKL 1764
Query: 287 AAKDAL 292
AA++AL
Sbjct: 1765 AARNAL 1770
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 40/173 (23%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++I+ Y +LE A T SC E YER E +GD+ L ++++ F YP G
Sbjct: 1325 KDIIDYPVPATKILE-ALTAASCQETL-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1382
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD- 177
LTR+R V+ L + A+ L Y++ ++ P+ +E+ RE+ +I D
Sbjct: 1383 LTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDE 1442
Query: 178 -----------YPLHSNGL--------------VDAPKVLADIVESTIGAVFI 205
Y +++ + V + K LAD+VE+ IG ++
Sbjct: 1443 ESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 1495
>sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1
SV=1
Length = 391
Score = 184 bits (467), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 158/236 (66%), Gaps = 10/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y+F+NK+LL+EA T SC + F SYERLE++GDS + L ++ + YP+L P
Sbjct: 64 EKILNYKFSNKSLLKEAITHTSCTD-FPSYERLEFIGDSAIGLAISNYLYLTYPSLEPHD 122
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL---DYPLHSNGLVD 187
L+ LR+ANV+TEKLARV++ GL+ +LR N P L+E+++EFSEA+ D + GLV
Sbjct: 123 LSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGLVK 182
Query: 188 APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT--HPVTELYEVCQK 245
APKVLAD+ ES GAV++D N + +W +F+ LL+P+++ + L+ PV+ L+++C K
Sbjct: 183 APKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHK 242
Query: 246 NKLKVKFVDLWKES--TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+K ++ + WK+ + I+++D+LL G A K+IA AAK+AL + +
Sbjct: 243 HKKRIDIKN-WKDGNVSIAVIYLDDELLASGR-AENKDIARLIAAKEALRKLSEVF 296
>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1
SV=2
Length = 1909
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 134/222 (60%), Gaps = 9/222 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
E L Y F K LL EA T S P S Y+RLE+VGD+VL+ L+T+ FF Y +LPPG
Sbjct: 1563 ERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPG 1622
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP----LHSNGL 185
LT LR+A VN E ARVA+K LH YLRH LE+QIREF + + +S GL
Sbjct: 1623 RLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGL 1682
Query: 186 VD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
D APKVL DIVES GA+F+D WKVF+ LL+PM++PETL HPV EL E C
Sbjct: 1683 GDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERC 1742
Query: 244 QKNKLKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAH 284
Q+ +++ +TA +FI+ +G A P+K++A
Sbjct: 1743 QQQAEGLEYKASRSGNTATVEVFIDGVQVGV-AQNPQKKMAQ 1783
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 37/157 (23%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T SC E F YER E +GD+ L ++++ F YP G LTR+R V+ L
Sbjct: 1361 EALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLY 1419
Query: 146 RVAIKLGLHKYLRHNK------------PLLEEQIREFSEAILD---YPLH--------- 181
+ A+ GL Y++ ++ P+ +E ++ + D P+
Sbjct: 1420 QFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFED 1479
Query: 182 ------------SNGLVDAPKVLADIVESTIGAVFID 206
S+ V + K LAD+VE+ IG +++
Sbjct: 1480 GEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1516
>sp|Q6ATG6|RTL2_ORYSJ Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica
GN=Os05g0271300 PE=2 SV=2
Length = 317
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 141/234 (60%), Gaps = 11/234 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E +L Y+F + LLEEA T S + SY+RLE+VGDS L L + + P L PG
Sbjct: 41 ERLLRYQFRDGRLLEEALTHQSFADDAVSYQRLEFVGDSALGLAFSNFLYLTNPTLGPGP 100
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP-------LHSN 183
L+ LR+AN++TEKLARVA++ L+ LR N P L+ + +F E + P +
Sbjct: 101 LSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTVPYGG 160
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+V APKVLADIVE+ AV++DC ++ +WKV + L +P+I+ ET+ PVT L+E+C
Sbjct: 161 SVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTMLHELC 220
Query: 244 QKNKLKVKFVDLWKES--TAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
QK+ +F W++ T ++F+ +L+G G+ + +K IA AA+DA +
Sbjct: 221 QKHGKMAQF-KTWQKGGMTVVNVFVAGELVGIGS-SEQKVIAKLNAARDATRKL 272
>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica
GN=DCL3A PE=2 SV=1
Length = 1651
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 136/236 (57%), Gaps = 10/236 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE--RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E LGY F+ K LL EA T PS E + YERLE++GD+VL++LLT+ F + +
Sbjct: 1245 EAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNE 1304
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF-----SEAILDYPLHSN 183
G LT LRSA+VN E A+VA+K H +L+H+ LL +QI E+ ++ L S+
Sbjct: 1305 GELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSD 1364
Query: 184 GLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
GL PKVL DIVES GA+ +D +D+VW +F+ LL P+++PE L+ P EL E C
Sbjct: 1365 GLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWC 1424
Query: 244 QKNK--LKVKFVDLWKESTA-FHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
K+ + + D A + +++ LL R ++ K++ A A+ L ++E
Sbjct: 1425 GKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLE 1480
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 60 ESLPNANNLDEEEILGYRFNNKN--LLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
ESL A+ L E +GY +N + L+ EA T C E F S ERLE +GDSVL ++
Sbjct: 1026 ESLTLASQLRSE--IGYSDSNISSFLILEAITTLRCSEDF-SMERLELLGDSVLKYAVSC 1082
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
F +PN G L+ +R + L ++ I+ + Y+R
Sbjct: 1083 HLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVR 1123
>sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300
PE=1 SV=2
Length = 1388
Score = 144 bits (362), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 58 ESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPS--CPERFFSYERLEYVGDSVLNLLL 115
++E L N + E +L Y F +K+LL EA T S PE Y+RLE++GDSVL+ L+
Sbjct: 1142 QAEKLVNVGYM--ESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLI 1199
Query: 116 TKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL----RHNKPLLEEQIREF 171
TK + YP L PG LT +RSA+VN E A VA+K LHK++ H + + EF
Sbjct: 1200 TKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEF 1259
Query: 172 SEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
++ L + PKVL D++ES GA+F+D + ++V+ K LL MI+PET+
Sbjct: 1260 EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETV 1319
Query: 232 KTHPVTELYEVCQKNKLKV-KFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKD 290
K HPV EL E+CQK + ++ K D +S + ++ A A K++A A K+
Sbjct: 1320 KLHPVRELTELCQKWQFELSKAKDF--DSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1377
Query: 291 ALN 293
LN
Sbjct: 1378 VLN 1380
>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica
GN=DCL3B PE=2 SV=2
Length = 1637
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 120/193 (62%), Gaps = 12/193 (6%)
Query: 61 SLPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERF--FSYERLEYVGDSVLNLLLTK 117
SL N+++E E L Y F+ K LL EA T PS E + Y+RLE++GDSVL+LLLT+
Sbjct: 1234 SLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTR 1293
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL- 176
+ + ++ PG LT LRSA V+ E A+ ++ +H +L+H +L EQI E+ + L
Sbjct: 1294 HLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLE 1353
Query: 177 ------DYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET 230
++ H+ V PKVL DI+ES GAVFID + ++D+VW++F+ LL P+I+P+
Sbjct: 1354 CQGKESEFLQHTTCKV--PKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDK 1411
Query: 231 LKTHPVTELYEVC 243
L P EL E+C
Sbjct: 1412 LALPPYRELLELC 1424
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 29/152 (19%)
Query: 82 NLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNT 141
L+ EA T C E F S ERLE +GDSVL ++ + F YP G L+ +RS V
Sbjct: 1047 TLILEAITTLRCCETF-SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCN 1105
Query: 142 EKLARVAIKLGLHKYLRHNK----------------------------PLLEEQIREFSE 173
L + I L Y+R N P IR+
Sbjct: 1106 ATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPS 1165
Query: 174 AILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
+ P K ++D VE+ +GA ++
Sbjct: 1166 FFVGKPCDRGHRWMCSKTISDCVEALVGAYYV 1197
>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1
SV=2
Length = 1580
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 131/242 (54%), Gaps = 7/242 (2%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
+P + L E E + + F+ K LL+EA T S E + SYERLE++GDSVL+ L+T+ F
Sbjct: 1192 IPKEDELIELERKIQHEFSAKFLLKEAITHSSLRESY-SYERLEFLGDSVLDFLITRHLF 1250
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF--SEAILDY 178
Y PG +T LRSA VN E A+VA+K LH +L+ +LE QI ++ S D
Sbjct: 1251 NTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDE 1310
Query: 179 PLHSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTE 238
S + PK L D+VES GA+ ID +D VW+VF+ LL P+++P+ L+ P E
Sbjct: 1311 TGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRE 1370
Query: 239 LYEVCQKNK--LKVKFV-DLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
L E+C +VK D K + ++D LL ++A +AA L +
Sbjct: 1371 LNELCDSLGYFFRVKCSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQL 1430
Query: 296 ER 297
E+
Sbjct: 1431 EK 1432
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 60 ESLPNANNLDEE---EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLT 116
ESL A+ L EE I + ++ ++LE A T +CPE F S ERLE +GDSVL + +
Sbjct: 980 ESLMLASQLREEIDCSIDNFSISSTSILE-AVTTLTCPESF-SMERLELLGDSVLKYVAS 1037
Query: 117 KEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHN 160
F YP+ G L+R R + ++ L R+ L Y+R+
Sbjct: 1038 CHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNG 1081
>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica
GN=DCL4 PE=2 SV=1
Length = 1657
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 114/204 (55%), Gaps = 11/204 (5%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQFFLYPNLPPG 129
EE++GY+F +K LL +AF PS + Y+RLE++GD+VL ++T + YP++ PG
Sbjct: 1218 EELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPG 1277
Query: 130 SLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD-- 187
+T LRS V + LA A++ +HK+L + L I +F Y SN D
Sbjct: 1278 QITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM----YVKLSNSEKDLL 1333
Query: 188 ----APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
PK L DIVES IGAV +D +++ VWKV LLKP+++ + T+P+ EL E+C
Sbjct: 1334 EEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELC 1393
Query: 244 QKNKLKVKFVDLWKESTAFHIFIE 267
Q + ++ K +H+ +E
Sbjct: 1394 QCHGFELGLPKPMKADGEYHVKVE 1417
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
S P A+ + IL EA T C ER S ER E +GD+ L ++ + +F
Sbjct: 1015 SFPEASQISASGIL-----------EALTTEKCLERI-SLERFEVLGDAFLKYVVGRHKF 1062
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
Y L G LTR RS VN L ++I+ L Y+R
Sbjct: 1063 ITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1100
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2
Length = 1702
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 108/190 (56%), Gaps = 4/190 (2%)
Query: 62 LPNANNLDE-EEILGYRFNNKNLLEEAFTDPSCPERFFS-YERLEYVGDSVLNLLLTKEQ 119
L NNL+ E L Y+F +K LL +AF PS Y+RLE++GD+VL+ L+T
Sbjct: 1286 LTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYF 1345
Query: 120 FFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP 179
F ++P L PG LT LRS +VN E LA VA+ L ++L L E I +++ + P
Sbjct: 1346 FTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSP 1405
Query: 180 LHSNGLVD--APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVT 237
L S PKVL D+VES +GA+F+DC +++ VW + L P+ + L+ P+
Sbjct: 1406 LASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIK 1465
Query: 238 ELYEVCQKNK 247
EL E+CQ K
Sbjct: 1466 ELIELCQSYK 1475
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSL 131
E+ G+R + EA T C ER S ERLE +GD+ L +++ F + +L G L
Sbjct: 1097 EVSGHR------VLEALTTEKCHERL-SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGEL 1149
Query: 132 TRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFS-------EAILDYPLHS-- 182
TR RS VN L R+AIK L Y+R ++ L Q F + + +HS
Sbjct: 1150 TRRRSNVVNNSNLCRLAIKKNLQVYIR-DQALDPTQFFAFGHPCRVTCDEVASKEVHSLN 1208
Query: 183 --NGLVDA---------------PKVLADIVESTIGAVFID 206
G++++ K +AD+VE+ +GA +D
Sbjct: 1209 RDLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFLVD 1249
>sp|Q9FKF0|RTL3_ARATH Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana GN=RTL3 PE=2
SV=1
Length = 957
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NK LL+EA T S ++RLE+ GDS+L + T YPNL
Sbjct: 8 EKILNYSFVNKTLLKEAITQKSP-----LFDRLEFFGDSILEVAFTNYICHTYPNLKVKE 62
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--DYPLHSNGLVDA 188
L LR+ANV+ EK AR+A+ LH +L P L ++++ F+EA+ D P+ GLV A
Sbjct: 63 LRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYGGLVKA 122
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHP 235
PK+LAD +ES VFID N + +W++F+ LL+P+ +P+ L P
Sbjct: 123 PKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQP 169
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 16/237 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E+IL Y F NK LL+E T + P ++ L +VG+S L+L TK + YP L P
Sbjct: 419 EKILNYSFVNKTLLKELLTHNNSP----LFQGLMFVGESALSLAFTKHLYLTYPMLEPKD 474
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAIL--DYPLHSNGLVDA 188
L+ LR AN +K A VA+K G+++ + P E+ +F E + D P +V A
Sbjct: 475 LSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDDPYR---VVKA 531
Query: 189 PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKT---HPVTELYEVCQK 245
PK+L +++ GAV+ID ++ + ++F+ LL+P+ + + L+ P L+ + K
Sbjct: 532 PKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQPFLMLFRLADK 591
Query: 246 NKLKVKF---VDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERLL 299
+ ++ F D ++++D + G A + + A AA++A+ + +
Sbjct: 592 HGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGC-AKRIDTAKLLAAEEAIQKLSECM 647
>sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica
GN=DCL2A PE=2 SV=1
Length = 1410
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 71 EEILGYRFNNKNLLEEAFT----DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +LGY+FN+ LL EA T S P Y+RLE++GD++L+ L T+ + YP+
Sbjct: 1165 EGMLGYKFNDSLLLLEALTHGSYQTSGPTS--CYQRLEFLGDAILDHLFTEYYYSKYPDC 1222
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQI----REFSEAILDYPLHS 182
P LT LRSA+VN A A+K GL+K++ H+ L ++ EF ++
Sbjct: 1223 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 1282
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
+ PKVL D++ES GA+++D ++VW+ K LL+P+ +PET++ PV L E
Sbjct: 1283 EAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEF 1342
Query: 243 CQKNKLKVKF 252
C + K+ +
Sbjct: 1343 CDRRSFKITY 1352
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S E LE +GDS L + T+ F Y G LT+++ ++ L
Sbjct: 992 EALTTKKCQEEF-SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALC 1050
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP---------LHSNGLVDAPKV----- 191
++A L Y+ E R++ LDY L NG+ K+
Sbjct: 1051 QLACSSNLVGYIHAE----EFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSK 1106
Query: 192 -LADIVESTIGA 202
+AD VE+ IGA
Sbjct: 1107 RIADSVEALIGA 1118
>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica
GN=DCL2B PE=2 SV=2
Length = 1377
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 7/187 (3%)
Query: 71 EEILGYRFNNKNLLEEAFT----DPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
E +LGY+FN+ LL EA T S P Y+RLE++GD++L+ L T+ + YP+
Sbjct: 1136 EGMLGYKFNDSLLLLEALTHGSYQTSGPTS--CYQRLEFLGDAILDHLFTEYYYSKYPDC 1193
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS-NGL 185
P LT LRSA+VN A A+K GL+K++ H+ L ++ + P +
Sbjct: 1194 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1253
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQK 245
+ PKVL D++ES GA+++D ++VW+ K LL+P+ +PET++ PV L E C +
Sbjct: 1254 IGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDR 1313
Query: 246 NKLKVKF 252
K+ +
Sbjct: 1314 RSFKITY 1320
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 86 EAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLA 145
EA T C E F S E LE +GDS L + T+ F Y G LT+++ ++ L
Sbjct: 963 EALTTKKCQEEF-SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALC 1021
Query: 146 RVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYP---------LHSNGLVDAPKV----- 191
++A L Y+ E R++ LDY L NG+ K+
Sbjct: 1022 QLACSSNLVGYIHAE----EFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSK 1077
Query: 192 -LADIVESTIGA 202
+AD VE+ IGA
Sbjct: 1078 RIADSVEALIGA 1089
>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1 SV=1
Length = 2249
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 119/253 (47%), Gaps = 34/253 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPS-CPERFF-SYERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE LGY+F +++ L +A T S P R Y+RLE++GD+VL+ L+T+ + P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G+LT LRSA VN A +A++ G HK+ RH P L + I F NG
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRI-----QQENGHCIS 2111
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
V+ PK L D+ ES GA+F+D N S+D+VW V+ ++ P I
Sbjct: 2112 EEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQF 2171
Query: 228 PETLKTHPVTELYEV---CQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAH 284
++ P+ EL E+ K K D + +F + G G IA
Sbjct: 2172 SNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGR---NYRIAK 2228
Query: 285 NRAAKDALNNIER 297
AAK AL +++
Sbjct: 2229 CTAAKCALRQLKK 2241
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 59 SESLPNANNLDEE-EILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTK 117
S LP + D + +++G+ + +++ +A T S + ERLE +GDS L +T
Sbjct: 1700 SAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDGINLERLETIGDSFLKYAITT 1758
Query: 118 EQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYL 157
+ Y N+ G L+ LRS V L R+ + L +Y+
Sbjct: 1759 YLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYM 1798
>sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB
40) GN=dcl1 PE=3 SV=2
Length = 1523
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 122/252 (48%), Gaps = 25/252 (9%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE LGYRF LL AFT PS P + Y+RLE++GDS+L+++ + F+ YP+
Sbjct: 1245 EEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDKD 1304
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV- 186
P LT + A V+ + L +A+KLGLH +LRH L+ QI ++E I S G V
Sbjct: 1305 PQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGAVD 1364
Query: 187 ------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHP 235
D PK L D+VE+ +GA F+D + +V F+ +K T+ HP
Sbjct: 1365 YWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANKHP 1424
Query: 236 VTELYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNR 286
T L C LK + VD S + + + ++ G A A +
Sbjct: 1425 TTFLQNRLTNEYGCTNYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGT-ASSGRYAKVK 1483
Query: 287 AAKDALNNIERL 298
A++ AL+ +E +
Sbjct: 1484 ASEKALSVLENM 1495
>sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC
A1513) GN=dcl1 PE=3 SV=2
Length = 1525
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 15/185 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFF---SYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE L YRF LL AFT PS P + Y+RLE++GDS+++++ ++ F +P+
Sbjct: 1247 EEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRD 1306
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV- 186
P LT + A V+ + L +A+KLGLH +L++ L+ QI +++E I S G V
Sbjct: 1307 PQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAVD 1366
Query: 187 ------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHP 235
D PK L D+VE+ +GAVF+D + + +++ + F++ +KP + HP
Sbjct: 1367 YWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANKHP 1426
Query: 236 VTELY 240
T L+
Sbjct: 1427 TTFLH 1431
>sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis (strain RS) GN=DCL1 PE=3
SV=3
Length = 1500
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 25/249 (10%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
LGY F LL AFT PS P R Y+RLE++GD++L++ + + +P+ P
Sbjct: 1230 LGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQW 1289
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA-- 188
LT + A V+ + L VA++LGLH +L H L+ QI + E I L S DA
Sbjct: 1290 LTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDPPDAWT 1349
Query: 189 -----PKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTHPVTE 238
PK L D+VE+ IGA+FID S ++V + F++ LK T+ HP T
Sbjct: 1350 LTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYANKHPTTY 1409
Query: 239 LYE------VCQKNKLK---VKFVDLWKESTAFHIFIEDQLLGRGAYAPKKEIAHNRAAK 289
L+ C LK V +VD + + D+++ G A A +A++
Sbjct: 1410 LHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVAEGV-ASSSRYAKLKASE 1468
Query: 290 DALNNIERL 298
AL+ +E L
Sbjct: 1469 AALSKLEGL 1477
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+YERLE++GD L + + F + P+ R V + L + A++ L+ ++R
Sbjct: 1059 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQNLFKTAVRFKLYAFIR 1118
Query: 159 HNKPLLEEQIREFSEAILDYPLHSNGLVD-----APKVLADIVESTIGAVFI--DCNSSI 211
++ +L S G + A K +AD+ E+ IGA + N
Sbjct: 1119 -SQSFSRRGWYPGGLTLLQGKGQSKGATENKHALADKTIADVCEALIGACCLLASKNHRF 1177
Query: 212 DIVWKVFKELL 222
DI K L+
Sbjct: 1178 DIAVKAVTALV 1188
>sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC
MYA-4574 / FGSC 10173) GN=DCL1 PE=3 SV=2
Length = 1522
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 17/181 (9%)
Query: 76 YRFNNKNLLEEAFTDPSCP---ERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLT 132
YRF LL AF PS P E SY+RLE++GDS+L++ F+ YP+ P LT
Sbjct: 1231 YRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDKDPQWLT 1290
Query: 133 RLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVD----- 187
++ V+ + L V +KLG H +++ N +L QIR++ + + +NG VD
Sbjct: 1291 EHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANGAVDYWVSV 1350
Query: 188 --APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-------KTHPVTE 238
PK LAD++E+ + A+F+D ++V K F LKP TL HP T
Sbjct: 1351 SEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTR 1410
Query: 239 L 239
L
Sbjct: 1411 L 1411
>sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dcl1 PE=3 SV=2
Length = 1534
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFF----SYERLEYVGDSVLNLLLTKEQFFLY 123
L EE LGY F LL A T PS P ++ Y+RLE++GDS+L+++ ++ F +
Sbjct: 1251 LQVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRF 1310
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSN 183
P+ P LT + A V+ + L +A+KLG HK+++ L+ QI + E I S
Sbjct: 1311 PDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESE 1370
Query: 184 GLV-------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL----- 231
G V D PK L D+VE+ +GA+F+D + S +++ F+ +KP ++
Sbjct: 1371 GAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFA 1430
Query: 232 KTHPVTELY 240
HP T L+
Sbjct: 1431 NKHPTTFLH 1439
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 32/154 (20%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+YERLE++GD L + + F P+ R + + L A K +++Y+R
Sbjct: 1085 NYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKRQIYRYIR 1144
Query: 159 ---------HNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGA------- 202
+ L Q ++ S+ +L H+ G K +AD+ E+ IGA
Sbjct: 1145 SRSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALG----EKTIADVCEALIGACLLSGGP 1200
Query: 203 ------------VFIDCNSSIDIVWKVFKELLKP 224
VF+D S WK + L KP
Sbjct: 1201 EHRFDMGVKAVSVFVDSPSHAVSRWKEYIGLYKP 1234
>sp|Q3AC58|RNC_CARHZ Ribonuclease 3 OS=Carboxydothermus hydrogenoformans (strain Z-2901
/ DSM 6008) GN=rnc PE=3 SV=1
Length = 235
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC----PERFFSY-ERLEYVGDSVLNLLLTKEQFFLYPN 125
E+ILG+ FNN ++L A T PS PE + ERLE++GD+VL L ++ F +P
Sbjct: 10 EKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTFPQ 69
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
G LT+LRS V E L +A K+ L K+LR K ++ N
Sbjct: 70 KSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKG--------------EFKAGGNQR 115
Query: 186 VDAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVC 243
+ LA+ VE+ IGAV+ DC ++ + +++ E LKP + E L T L E+
Sbjct: 116 MSN---LANAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPE-NLEQLPKDEKTTLQELL 171
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIE 296
QK K V ++ E H + I D+L+ G KKE A AAK AL E
Sbjct: 172 QKEKNNVLRYEILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKE-AEQEAAKKAL---E 227
Query: 297 RLLNEK 302
L NEK
Sbjct: 228 LLKNEK 233
>sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / FGSC A1164 / NRRL 181) GN=dcl1 PE=3 SV=1
Length = 1538
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 16/186 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
EE LGY F LL A T PS P R Y+RLE++GDS+L+++ ++ F +P+
Sbjct: 1258 EEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDR 1317
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P LT + A V+ + L +++KLG H+ + L+ QI + E I S G V
Sbjct: 1318 DPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIESAQAESRGAV 1377
Query: 187 -------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTH 234
D PK L D+VE+ +GA+F+D ++ F+ +KP ++ H
Sbjct: 1378 DYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQIKPFFEDMSIYDTFANKH 1437
Query: 235 PVTELY 240
P T L+
Sbjct: 1438 PTTFLH 1443
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 25/122 (20%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+YERLE++GD L + + + P+ R + + L AIK +++Y+R
Sbjct: 1089 NYERLEFLGDCFLKMATSIALYTQNPDDDEFDYHVNRMCLICNKNLFNTAIKKQIYRYIR 1148
Query: 159 HNKPLLEEQIREFSEAILDYP---------LHSNGLVD------APKVLADIVESTIGAV 203
R FS I YP HS L+ K +AD+ E+ IGA
Sbjct: 1149 S---------RGFSRHIW-YPDGLTLLHGKDHSKKLLSEGKHALGEKTIADVCEALIGAS 1198
Query: 204 FI 205
+
Sbjct: 1199 LL 1200
>sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=dcl1 PE=3 SV=3
Length = 1537
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 16/186 (8%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPE----RFFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
EE LGY F LL A T PS P R Y+RLE++GDS+L+++ ++ F +P+
Sbjct: 1257 EEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDR 1316
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
P L+ + A V+ + L +++KLG H+ + L+ QI + E I S G V
Sbjct: 1317 DPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGAV 1376
Query: 187 -------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL-----KTH 234
D PK L D+VE+ +GA+F+D ++ F+ +KP ++ H
Sbjct: 1377 DYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKH 1436
Query: 235 PVTELY 240
P T L+
Sbjct: 1437 PTTFLH 1442
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 25/122 (20%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+YERLE++GD L + + F PN R + + L AIK +++Y+R
Sbjct: 1088 NYERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKNLFNTAIKKQIYRYIR 1147
Query: 159 HNKPLLEEQIREFSEAILDYP---------LHSNGLVD------APKVLADIVESTIGAV 203
R FS I YP HS L+ K +AD+ E+ IGA
Sbjct: 1148 S---------RGFSRHIW-YPDGLTLLHGKDHSTKLLSEGKHALGEKTIADVCEALIGAS 1197
Query: 204 FI 205
+
Sbjct: 1198 LL 1199
>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus GN=DICER1 PE=2 SV=3
Length = 1917
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1665 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1780
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1840
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1841 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1896
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1897 SAAARRALRSLK 1908
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 55 DESESESLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLL 114
D +SE P+A LG N L+ +A T + + F + ERLE +GDS L
Sbjct: 1273 DRMDSEQSPSAGY--SSRTLG---PNPGLILQALTLSNASDGF-NLERLEMLGDSFLKHA 1326
Query: 115 LTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
+T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1327 ITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>sp|A4RKC3|DCL1_MAGO7 Dicer-like protein 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC
MYA-4617 / FGSC 8958) GN=DCL1 PE=3 SV=2
Length = 1591
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 27/196 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERF---FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
+GYRF N LL AF PS P ++ SY+RLE++GDS+L+++ F +P+ P
Sbjct: 1250 MGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHPDKDPQW 1309
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV---- 186
LT + A V+ + VA+ LG H++L H +P L I E++E + + L
Sbjct: 1310 LTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQLAVRRG 1369
Query: 187 ---------------DAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETL 231
PK L DI+E+ +GA+F+D V F +KP + ++
Sbjct: 1370 QREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPYFADMSI 1429
Query: 232 -----KTHPVTELYEV 242
HPVT + +
Sbjct: 1430 YDMYSSKHPVTHITSI 1445
>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 PE=1 SV=3
Length = 1916
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VKFQLEKNEMQGM 1779
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S+++VW+V+ +++P+I
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1840 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1895
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1896 SAAARRALRSLK 1907
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC
A1156) GN=dcl1 PE=3 SV=2
Length = 1519
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 26/204 (12%)
Query: 60 ESLPNANNLD----EEEILGYRFNNKNLLEEAFTDPSCPE---RFFSYERLEYVGDSVLN 112
E P+ + +D EE LGY F LL AFT PS P R Y+ LE++GD++L+
Sbjct: 1224 EQAPDGSEIDLCRRVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLD 1283
Query: 113 LLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF- 171
++ ++ F +P+ P LT + A V+ + L +A+KLGLH +L + L+ QI +
Sbjct: 1284 MVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHYA 1343
Query: 172 ---------SEAILDYPLHSNGLVDAPKV-LADIVESTIGAVFIDCNSSIDIVWKVFKEL 221
S+ +DY + D PKV L D+VE+ +GAVF+D N + V F++
Sbjct: 1344 EEAQAAASQSDVAVDYWTLTQ---DPPKVCLPDMVEAYLGAVFVDSNFRFEEVEVFFQQH 1400
Query: 222 LKPMISPETL-----KTHPVTELY 240
+KP + HP T L+
Sbjct: 1401 IKPYFHDMAIYDTFANRHPTTFLH 1424
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 99 SYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLR 158
+YERLE++GD L + + F +P+ R + L A+K L++++R
Sbjct: 1070 NYERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIR 1129
Query: 159 ---------HNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFI 205
+ + L Q R+ S+ I H+ A K +AD+ E+ IGA +
Sbjct: 1130 SRGFSRDTWYPEGLTLLQGRDHSKKIGSESKHAL----AEKTIADVCEALIGAALL 1181
>sp|Q3SH50|RNC_THIDA Ribonuclease 3 OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=rnc PE=3 SV=1
Length = 226
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
++ LGY F+ LL++A T S + ERLE++GDSVLN + + + +P+LP GS
Sbjct: 11 QQALGYTFSRSGLLQQALTHRSYGA--LNNERLEFLGDSVLNCSVARALYDAFPDLPEGS 68
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V E LA +A L L LR + L+ +G P
Sbjct: 69 LSRLRANLVRQETLAEIAGALRLGDSLRLGEGELK-----------------SGGFRRPS 111
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD +ES GAVF+D + D +V + L P+++ P+ P T L E+ Q +
Sbjct: 112 ILADALESLFGAVFLD--AGFDEAQRVVRRLFDPLVAQIDPKASGKDPKTRLQEILQSRR 169
Query: 248 L 248
L
Sbjct: 170 L 170
>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3
Length = 1922
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1785
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1846 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1901
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1902 SAAARRALRSLK 1913
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1310 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1365
>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=2 SV=3
Length = 1923
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + YRF NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEMQGM 1786
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ + ++ + + + + +++G+G + IA
Sbjct: 1847 SANVPRSPVRELLEM----EPEITKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAK 1902
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1903 SAAARRALRSLK 1914
>sp|Q5JK90|RTL1_ORYSJ Ribonuclease 3-like protein 1 OS=Oryza sativa subsp. japonica
GN=Os01g0551100 PE=2 SV=1
Length = 256
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 113/198 (57%), Gaps = 12/198 (6%)
Query: 70 EEEILGYRFNNKN--LLEEAFTDPSCPERFFS----YERLEYVGDSVLNLLLTKEQFFLY 123
E + GY F + LLE+A T P ++RLE++GD+ L L +
Sbjct: 25 ERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDD 84
Query: 124 PNLPPGSLTRLRSANVNTEKLARVAI-KLGLHKYLRHNKPLLEEQIREFSEAILDYPLHS 182
P L G LT LRSANV+T+KLARVA+ + R+N + ++ F++++ + P +S
Sbjct: 85 PGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSV-EGP-YS 142
Query: 183 NGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPETLKTHPVTELYEV 242
++ P+VLADIVE+ +GAV++D ++++ KV K L +P+I+ + L P + L E+
Sbjct: 143 GDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNEL 202
Query: 243 CQKNK--LKVKFVDLWKE 258
+++ L++K + W++
Sbjct: 203 GGEHREDLEIKIL-AWRK 219
>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 PE=2 SV=3
Length = 1921
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSE--------AILDYPL 180
G LT LRSA VN A +A+K HKY + P L I +F + +D L
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 181 HSNGLVD-------APKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS--PETL 231
+ + PK + DI ES GA+++D S+++VW+V+ +++P+I +
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 232 KTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAHNRAA 288
PV EL E+ KF + + + +++G+G + IA + AA
Sbjct: 1849 PRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1904
Query: 289 KDALNNIE 296
+ AL +++
Sbjct: 1905 RRALRSLK 1912
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1311 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1366
>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2
Length = 1865
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 34/255 (13%)
Query: 68 LDEEEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPN 125
L+ E + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK +
Sbjct: 1610 LNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQ 1669
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
PG LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1670 HSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF----VQFQLEKNEM 1725
Query: 186 -------------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI 226
++ PK + DI ES GA+++D S++ VW+V+ +++P+I
Sbjct: 1726 QGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 1785
Query: 227 S--PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKE 281
+ PV EL E+ KF + + + +++G+G +
Sbjct: 1786 EKFSANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYR 1841
Query: 282 IAHNRAAKDALNNIE 296
IA + AA+ AL +++
Sbjct: 1842 IAKSAAARRALRSLK 1856
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGL 153
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K GL
Sbjct: 1292 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGL 1347
>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=3
Length = 1910
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 31/260 (11%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
EE +GYRF + L +AFT S + Y+RLE++GD+VL+ ++T+ F P
Sbjct: 1647 EEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYSP 1706
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREF----SEAILDYPLHSNG 184
G LT LRSA VN A +A+K K+ P L I +F SE D ++
Sbjct: 1707 GVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAEM 1766
Query: 185 L---------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPE 229
++ PK + DI ES GA+++D ++D W+V +++ I
Sbjct: 1767 YMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIE-L 1825
Query: 230 TLKTHPVTELYEVCQKNKLKVKFVDLWK--ESTAFHIFIE----DQLLGRGAYAPKKEIA 283
P + + E+ + + KV+F + + ES + +E + G G IA
Sbjct: 1826 CCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNNMRFTGMGR---NYRIA 1882
Query: 284 HNRAAKDALNNIERLLNEKR 303
AAK AL + ++ ++R
Sbjct: 1883 KATAAKRALKYLHQIEQQRR 1902
>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis GN=dicer1 PE=2 SV=2
Length = 1893
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 34/252 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFS--YERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
E+ + Y F NK L +AFT S + Y+RLE++GD++L+ L+TK + P
Sbjct: 1641 EKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1700
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL--- 185
G LT LRSA VN A +A+K HKY + P L I +F + + L N +
Sbjct: 1701 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDF----VQFQLEKNEMQGM 1756
Query: 186 ----------------VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS-- 227
++ PK + DI ES GA+++D S++ VW V+ +++P+I
Sbjct: 1757 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKF 1816
Query: 228 PETLKTHPVTELYEVCQKNKLKVKFVDLWKESTAFHIFIEDQLLGRGAY---APKKEIAH 284
+ PV EL E+ KF + + + +++G+G + IA
Sbjct: 1817 SANVPRSPVRELLEM---EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAK 1872
Query: 285 NRAAKDALNNIE 296
+ AA+ AL +++
Sbjct: 1873 SAAARRALRSLK 1884
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLG 152
F+ ERLE +GDS L +T F YP+ G L+ +RS V+ L R+ K G
Sbjct: 1287 FNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKG 1341
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F N LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V K + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVKFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQL 226
>sp|Q2KWY0|RNC_BORA1 Ribonuclease 3 OS=Bordetella avium (strain 197N) GN=rnc PE=3 SV=1
Length = 251
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 94/196 (47%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E LG+ F ++ LLE+A T S R ERLE++GDSVLN ++ F Y L G
Sbjct: 7 ETRLGHHFGDQALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYAKLDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+R+R+ V LA +A +L L YLR L E +++ +G P
Sbjct: 65 LSRVRANLVKQASLADIAQRLELSPYLR----LGEGEMK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D D KV ++ P+++ PETL T L E Q K
Sbjct: 108 ILADAVEALFGAVFLDAG--FDAARKVIEQQYVPVLANVDPETLGKDAKTLLQEFLQGRK 165
Query: 248 LKVKFVDLWKESTAFH 263
L + + A H
Sbjct: 166 LALPLYTVVATHGAAH 181
>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dcr1 PE=1 SV=1
Length = 1374
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 9/150 (6%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPER---FFSYERLEYVGDSVLNLLLTKEQFFLYPNLP 127
EE +GY F NK LL AF PS + + +Y++LE++GD+VL+ ++ + + YPN
Sbjct: 1087 EETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNAT 1146
Query: 128 PGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNG--- 184
G LT +S V + L+ + L LHKY++H + + I E+ E I + ++
Sbjct: 1147 SGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENPW 1206
Query: 185 ---LVDAPKVLADIVESTIGAVFIDCNSSI 211
+D+PK ++D +E+ I A+F+D S+
Sbjct: 1207 FWFEIDSPKFISDTLEAMICAIFLDSGFSL 1236
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 98 FSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKY- 156
F Y+RLE+ GD L L + F +P+ L R ++ L +VAI L KY
Sbjct: 927 FDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYA 986
Query: 157 ------LRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLADIVESTIGAVFIDCNSS 210
+RH P F ++ D ++ + K +AD+VE++IGA +D S
Sbjct: 987 LSTPLEIRHWCPY------GFQKSTSDKCRYAVLQKLSVKRIADMVEASIGACLLD--SG 1038
Query: 211 IDIVWKVFKEL 221
+D K+ K L
Sbjct: 1039 LDSALKICKSL 1049
>sp|A9IIJ2|RNC_BORPD Ribonuclease 3 OS=Bordetella petrii (strain ATCC BAA-461 / DSM
12804 / CCUG 43448) GN=rnc PE=3 SV=1
Length = 252
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L +RF N LLE+A T S R ERLE++GDSVLN ++ F +P L G
Sbjct: 7 ETRLDHRFGNAALLEQALTHRSHSARH--NERLEFLGDSVLNFVVAAMLFERFPKLDEGD 64
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA + +L L +YLR L E +++ +G P
Sbjct: 65 LSRLRANLVKQASLADIGQRLELSQYLR----LGEGELK-------------SGGFRRPS 107
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GA F+D D KV +P+++ P+TL T L E Q K
Sbjct: 108 ILADAVEAIFGAAFLD--GGFDTARKVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRK 165
Query: 248 LKVKFVDLWKESTAFH 263
L + + A H
Sbjct: 166 LALPLYTVVATHGAAH 181
>sp|Q5GTI3|RNC_WOLTR Ribonuclease 3 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS)
GN=rnc PE=3 SV=1
Length = 243
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 36/244 (14%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+I+ YRF N +LEEA T PS +R +YERLE++GDS+LN++++ F L+P
Sbjct: 20 KIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLFPKE 79
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L R ++ V +A VA ++ L ++ I++ NG
Sbjct: 80 KEGALARRKTDLVCGNTIANVAKEIKLGNFI-----------------IMNNSERCNGGK 122
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID + V K ++E K M+S L P T L E Q
Sbjct: 123 RNLKNLENALEALIGAIYIDGGFANVKKFVTKHWEERAKGMLS---LPQDPKTSLQEWTQ 179
Query: 245 KNKLKVKFVDLWKE-----STAFHIFIEDQLLGRG-AYAPKKEIAHNRAAK---DALNNI 295
KNKL + +L K+ S F I I + G+ A A K++A +AA+ + +NN
Sbjct: 180 KNKLPLPEYELMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEKINNS 239
Query: 296 ERLL 299
E+ +
Sbjct: 240 EKTI 243
>sp|Q5R106|RNC_IDILO Ribonuclease 3 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=rnc PE=3 SV=1
Length = 229
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 24/190 (12%)
Query: 61 SLPNANNLDEEEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQF 120
SLP + E+I+GY F + LL +A T S ERLE++GDS+L L++ + +
Sbjct: 2 SLPKPPLTELEKIVGYSFEQQGLLHQAMTHRSASSTH--NERLEFLGDSILGLVIAEALY 59
Query: 121 FLYPNLPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPL 180
+P + G L+R+R+A V LA++ K+GL +L + L+
Sbjct: 60 QKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELK--------------- 104
Query: 181 HSNGLVDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKP---MISPETLKTHPVT 237
+G +LAD VE+ IGA+++D S +D + +V +P +I P T + P T
Sbjct: 105 --SGGYRRESILADAVEAIIGAIYLD--SDMDTIRQVILNWFEPQLTLIEPGTSQKDPKT 160
Query: 238 ELYEVCQKNK 247
L E+ Q +
Sbjct: 161 RLQELLQARQ 170
>sp|C0R4Q8|RNC_WOLWR Ribonuclease 3 OS=Wolbachia sp. subsp. Drosophila simulans (strain
wRi) GN=rnc PE=3 SV=1
Length = 232
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 37/241 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+I+ Y+F N +LEEA T PS +R SYERLE++GDSVLN++++ F L+P
Sbjct: 10 KIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFPEE 69
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L + ++ V +A VA ++ L ++ I++ NG
Sbjct: 70 KEGALAKRKTDLVCGNTIANVAKEIKLGSFI-----------------IMNNSERCNGGR 112
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID + + + +++L K M+ P P T L E Q
Sbjct: 113 CNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDP---PQDPKTSLQEWTQ 169
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIEDQLLGR-GAYAPKKEIAHNRAAKDALNNIE 296
KNKL + +L K++ H + IED G+ A A K+IA +AA+ L I
Sbjct: 170 KNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKAAELMLEKIG 227
Query: 297 R 297
+
Sbjct: 228 K 228
>sp|Q73FT3|RNC_WOLPM Ribonuclease 3 OS=Wolbachia pipientis wMel GN=rnc PE=3 SV=1
Length = 232
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 37/241 (15%)
Query: 72 EILGYRFNNKNLLEEAFTDPSCPER-----FFSYERLEYVGDSVLNLLLTKEQFFLYPNL 126
+I+ Y+F N +LEEA T PS +R SYERLE++GDSVLN++++ F L+P
Sbjct: 10 KIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFPEE 69
Query: 127 PPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLV 186
G+L + ++ V +A VA ++ L ++ I++ NG
Sbjct: 70 KEGALAKRKTDLVCGNTIANVAKEIKLGSFI-----------------IMNNSERCNGGR 112
Query: 187 DAPKVLADIVESTIGAVFIDCN--SSIDIVWKVFKELLKPMISPETLKTHPVTELYEVCQ 244
K L + +E+ IGA++ID + + + +++L K M+ P P T L E Q
Sbjct: 113 CNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDP---PQDPKTSLQEWTQ 169
Query: 245 KNKLKVKFVDLWKESTAFH-------IFIEDQLLGR-GAYAPKKEIAHNRAAKDALNNIE 296
KNKL + +L K++ H + IED G+ A A K+IA +AA+ L I
Sbjct: 170 KNKLPLPEYELVKQTGPAHNPEFTISVCIED--YGKVSACASSKKIAEQKAAELMLEKIG 227
Query: 297 R 297
+
Sbjct: 228 K 228
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F + LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI-SPETLKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I + E L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGEYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINQL 226
>sp|A4J683|RNC_DESRM Ribonuclease 3 OS=Desulfotomaculum reducens (strain MI-1) GN=rnc
PE=3 SV=1
Length = 246
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 121/239 (50%), Gaps = 33/239 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSY-----ERLEYVGDSVLNLLLTKEQFFLYPNLPP 128
LG++++N LL +A T SC + +RLE++GD+VL L++++ + ++P+
Sbjct: 15 LGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKMFPDRTE 74
Query: 129 GSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDA 188
G LT++R+++V LA+VA L L + LR + EE+ +G +
Sbjct: 75 GELTKMRASSVCEPSLAKVARGLDLGRCLRMGRG--EER---------------SGGRER 117
Query: 189 PKVLADIVESTIGAVFIDCNSSID--IVWKVFKELLKPMISPETLKTHPVTELYEVCQKN 246
P +LAD E+ +GA+++D I V ++ +++ + + TEL E+ Q++
Sbjct: 118 PSILADAFEALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYK-TELQEILQQS 176
Query: 247 KLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNIERL 298
+ ES H + + +++G+G+ KKE A +AAKDA ++E +
Sbjct: 177 SPDPLTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSKKE-AEQQAAKDAFQHLEGM 234
>sp|Q7VW39|RNC_BORPE Ribonuclease 3 OS=Bordetella pertussis (strain Tohama I / ATCC
BAA-589 / NCTC 13251) GN=rnc PE=3 SV=1
Length = 256
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L +RF +K LLE+A T S R ERLE++GDSVLN ++ F Y L G
Sbjct: 10 ETRLDHRFGDKALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYGKLDEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +L L +YLR L E +++ +G P
Sbjct: 68 LSRLRANLVKQASLADIAQRLDLSQYLR----LGEGELK-------------SGGFRRPS 110
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D + +V +P+++ P+TL T L E Q K
Sbjct: 111 ILADTVEALFGAVFLDAG--FEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRK 168
Query: 248 L 248
L
Sbjct: 169 L 169
>sp|Q7W5J6|RNC_BORPA Ribonuclease 3 OS=Bordetella parapertussis (strain 12822 / ATCC
BAA-587 / NCTC 13253) GN=rnc PE=3 SV=1
Length = 256
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L +RF +K LLE+A T S R ERLE++GDSVLN ++ F Y L G
Sbjct: 10 ETRLDHRFGDKALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYGKLDEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +L L +YLR L E +++ +G P
Sbjct: 68 LSRLRANLVKQASLADIAQRLDLSQYLR----LGEGELK-------------SGGFRRPS 110
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D + +V +P+++ P+TL T L E Q K
Sbjct: 111 ILADTVEALFGAVFLDAG--FEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRK 168
Query: 248 L 248
L
Sbjct: 169 L 169
>sp|Q7WD32|RNC_BORBR Ribonuclease 3 OS=Bordetella bronchiseptica (strain ATCC BAA-588 /
NCTC 13252 / RB50) GN=rnc PE=3 SV=1
Length = 256
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGS 130
E L +RF +K LLE+A T S R ERLE++GDSVLN ++ F Y L G
Sbjct: 10 ETRLDHRFGDKALLEQALTHRSHGARH--NERLEFLGDSVLNFVVAAMLFERYGKLDEGD 67
Query: 131 LTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPK 190
L+RLR+ V LA +A +L L +YLR L E +++ +G P
Sbjct: 68 LSRLRANLVKQASLADIAQRLDLSQYLR----LGEGELK-------------SGGFRRPS 110
Query: 191 VLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMIS---PETLKTHPVTELYEVCQKNK 247
+LAD VE+ GAVF+D + +V +P+++ P+TL T L E Q K
Sbjct: 111 ILADTVEALFGAVFLDAG--FEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRK 168
Query: 248 L 248
L
Sbjct: 169 L 169
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 34/239 (14%)
Query: 71 EEILGYRFNNKNLLEEAFTDPSC-----PERFFSYERLEYVGDSVLNLLLTKEQFFLYPN 125
+E +G+ F N LL++AFT S E ERLE++GD+VL L ++ F YP+
Sbjct: 8 QESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPD 67
Query: 126 LPPGSLTRLRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGL 185
+ G +T++R+A V L A + KY+R K EE+ G
Sbjct: 68 MAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKG--EEKA---------------GG 110
Query: 186 VDAPKVLADIVESTIGAVFIDCNSSIDIVWKVFKELLKPMISPET-LKTHPV-TELYEVC 243
P +LAD+ ES IGA+++D + ID V + ++ P I L+T T+L E+
Sbjct: 111 RTRPALLADVFESFIGALYLD--NGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIV 168
Query: 244 QKNKLKVKFVDLWKESTAFH-------IFIEDQLLGRGAYAPKKEIAHNRAAKDALNNI 295
Q+++ + D+ E+ H + + Q+LG+G+ KK+ A AA+ A+N +
Sbjct: 169 QRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQ-AEQSAAQFAINKL 226
>sp|Q820I0|RNC_NITEU Ribonuclease 3 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=rnc PE=3 SV=1
Length = 245
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 24/180 (13%)
Query: 74 LGYRFNNKNLLEEAFTDPSCPERFFSYERLEYVGDSVLNLLLTKEQFFLYPNLPPGSLTR 133
LGY F +LL EA T S F + ER E++GDSVLN ++ F +P+LP G LTR
Sbjct: 31 LGYTFKQPDLLREALTHRSLG--FPNNERFEFLGDSVLNCAVSTLLFKRFPSLPEGDLTR 88
Query: 134 LRSANVNTEKLARVAIKLGLHKYLRHNKPLLEEQIREFSEAILDYPLHSNGLVDAPKVLA 193
LR+ VN + L R+A LG+ + + LL E R+ +G P +LA
Sbjct: 89 LRANFVNQQALHRLASALGIGELI-----LLGEGERK------------SGGHHRPSILA 131
Query: 194 DIVESTIGAVFIDCNSSIDIVWKVFKELLKPMI---SPETLKTHPVTELYEVCQKNKLKV 250
+ VE+ IGA++++ S +V +V L +P+I P+T T L E Q K+ +
Sbjct: 132 NAVEAIIGAIYLE--SGFAVVEQVIVALYEPLIRQLDPDTSGKDSKTLLQEYLQSRKIAL 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,939,227
Number of Sequences: 539616
Number of extensions: 4936023
Number of successful extensions: 14407
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 13050
Number of HSP's gapped (non-prelim): 691
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)